Query 036345
Match_columns 954
No_of_seqs 483 out of 4428
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 20:16:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.7E-48 1.3E-52 451.8 25.2 316 175-516 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-38 5E-43 371.2 19.7 285 174-508 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 9.6E-36 3.3E-40 386.7 26.1 312 169-514 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.4E-33 1.1E-37 331.5 26.2 306 170-511 122-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 1.1E-27 3.8E-32 292.3 16.2 386 534-950 268-767 (768)
6 4ecn_A Leucine-rich repeat pro 99.9 2.5E-25 8.5E-30 268.9 22.5 343 534-926 447-839 (876)
7 4eco_A Uncharacterized protein 99.9 1.5E-25 5E-30 267.0 19.5 343 534-927 205-600 (636)
8 4eco_A Uncharacterized protein 99.9 1.9E-25 6.6E-30 266.0 14.2 356 535-926 81-578 (636)
9 3v47_A TOLL-like receptor 5B a 99.9 4.4E-24 1.5E-28 245.1 22.8 356 534-926 29-407 (455)
10 2z7x_B TOLL-like receptor 1, v 99.9 4.1E-24 1.4E-28 249.7 21.0 366 534-926 20-480 (520)
11 3vq2_A TLR4, TOLL-like recepto 99.9 1E-23 3.4E-28 251.5 24.5 360 534-926 31-460 (606)
12 3rgz_A Protein brassinosteroid 99.9 8E-25 2.7E-29 267.0 14.5 344 534-926 199-550 (768)
13 4ecn_A Leucine-rich repeat pro 99.9 7E-24 2.4E-28 256.2 18.9 333 545-926 435-818 (876)
14 3o6n_A APL1; leucine-rich repe 99.9 1.8E-23 6.2E-28 234.5 20.6 305 534-928 44-353 (390)
15 2id5_A Lingo-1, leucine rich r 99.9 2E-23 6.9E-28 241.0 21.5 314 539-926 15-332 (477)
16 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-23 5.1E-28 250.1 20.8 360 539-926 15-436 (606)
17 3t6q_A CD180 antigen; protein- 99.9 3.3E-23 1.1E-27 247.1 23.2 364 534-926 32-461 (606)
18 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2E-23 6.8E-28 246.0 20.6 149 772-926 350-509 (562)
19 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-23 5.7E-28 246.5 19.8 363 534-926 25-509 (549)
20 4fmz_A Internalin; leucine ric 99.9 1.8E-23 6E-28 230.8 18.4 303 534-926 43-345 (347)
21 3oja_B Anopheles plasmodium-re 99.9 3.3E-23 1.1E-27 245.4 20.0 304 535-927 51-358 (597)
22 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-22 7.6E-27 248.1 27.4 345 533-926 22-438 (844)
23 2z63_A TOLL-like receptor 4, v 99.9 4E-23 1.4E-27 244.6 19.6 145 534-688 27-175 (570)
24 3t6q_A CD180 antigen; protein- 99.9 3.7E-23 1.3E-27 246.7 19.2 279 611-927 274-560 (606)
25 1ziw_A TOLL-like receptor 3; i 99.9 4.9E-23 1.7E-27 249.1 20.5 154 534-697 24-182 (680)
26 1o6v_A Internalin A; bacterial 99.9 1E-22 3.5E-27 233.9 21.8 322 536-927 47-388 (466)
27 2z63_A TOLL-like receptor 4, v 99.9 1.5E-22 5.1E-27 239.7 20.3 131 534-674 51-189 (570)
28 4fcg_A Uncharacterized protein 99.9 8.6E-23 3E-27 222.2 16.7 233 584-924 79-311 (328)
29 3j0a_A TOLL-like receptor 5; m 99.9 3.9E-22 1.3E-26 245.9 24.0 347 538-926 7-393 (844)
30 1o6v_A Internalin A; bacterial 99.9 3.6E-22 1.2E-26 229.3 21.1 307 534-909 67-393 (466)
31 3v47_A TOLL-like receptor 5B a 99.9 1.7E-22 6E-27 231.8 17.5 331 533-907 52-412 (455)
32 1ziw_A TOLL-like receptor 3; i 99.9 6.9E-22 2.3E-26 239.0 22.8 269 538-833 7-283 (680)
33 3o6n_A APL1; leucine-rich repe 99.9 3.3E-22 1.1E-26 224.2 17.7 280 534-901 68-350 (390)
34 3bz5_A Internalin-J, INLJ; leu 99.9 7.9E-22 2.7E-26 224.4 20.2 306 534-925 41-350 (457)
35 2z81_A CD282 antigen, TOLL-lik 99.9 2.5E-22 8.5E-27 236.5 16.5 341 540-925 10-442 (549)
36 2id5_A Lingo-1, leucine rich r 99.9 1.9E-21 6.5E-26 224.4 21.2 152 534-696 31-186 (477)
37 3oja_B Anopheles plasmodium-re 99.9 5.4E-22 1.9E-26 235.0 17.0 280 534-901 74-356 (597)
38 4fmz_A Internalin; leucine ric 99.9 8.8E-22 3E-26 217.1 17.4 285 553-926 39-323 (347)
39 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-21 5.3E-26 227.9 19.3 359 538-926 3-456 (520)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.3E-21 1.5E-25 226.0 22.7 359 537-926 33-485 (562)
41 1ogq_A PGIP-2, polygalacturona 99.9 6.1E-22 2.1E-26 214.2 12.9 248 535-835 50-304 (313)
42 2ft3_A Biglycan; proteoglycan, 99.9 8.6E-21 2.9E-25 207.5 19.3 246 536-842 34-283 (332)
43 1xku_A Decorin; proteoglycan, 99.9 1.2E-20 4.2E-25 206.1 19.9 248 536-843 32-283 (330)
44 3bz5_A Internalin-J, INLJ; leu 99.8 1.1E-20 3.8E-25 214.9 18.9 287 551-925 35-329 (457)
45 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-21 1.1E-25 208.4 12.9 253 558-907 50-308 (313)
46 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-20 3.8E-25 226.9 17.8 360 534-926 51-579 (635)
47 4fcg_A Uncharacterized protein 99.8 3.5E-20 1.2E-24 201.5 18.3 105 557-672 80-193 (328)
48 2ft3_A Biglycan; proteoglycan, 99.8 4.7E-20 1.6E-24 201.6 15.6 290 558-925 33-331 (332)
49 1xku_A Decorin; proteoglycan, 99.8 1E-19 3.5E-24 198.9 16.6 117 559-691 32-150 (330)
50 2z80_A TOLL-like receptor 2, v 99.8 3.3E-20 1.1E-24 204.8 11.7 267 541-926 37-313 (353)
51 1jl5_A Outer protein YOPM; leu 99.8 2.2E-19 7.6E-24 204.0 17.7 86 534-632 10-108 (454)
52 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-18 3.6E-23 204.3 21.6 119 535-680 40-158 (622)
53 1jl5_A Outer protein YOPM; leu 99.8 1.4E-18 4.8E-23 197.4 21.4 303 534-926 90-408 (454)
54 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.6E-23 209.6 18.7 146 540-698 36-185 (635)
55 2z66_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 188.4 16.1 245 539-833 11-259 (306)
56 3zyi_A Leucine-rich repeat-con 99.8 1.4E-18 4.9E-23 198.4 16.7 241 537-833 56-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 2.3E-18 7.8E-23 196.0 17.1 241 537-833 45-290 (440)
58 2z80_A TOLL-like receptor 2, v 99.8 4.3E-19 1.5E-23 195.8 10.4 252 534-833 51-312 (353)
59 1ozn_A Reticulon 4 receptor; N 99.7 3.3E-18 1.1E-22 182.5 11.8 218 538-833 14-236 (285)
60 1z7x_W Ribonuclease inhibitor; 99.7 8.2E-21 2.8E-25 218.3 -9.7 359 534-926 2-410 (461)
61 2z66_A Variable lymphocyte rec 99.7 2E-17 6.8E-22 178.5 17.0 100 561-674 10-113 (306)
62 3o53_A Protein LRIM1, AGAP0063 99.7 5.9E-19 2E-23 191.3 4.1 248 555-907 31-279 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.7 8.7E-19 3E-23 190.0 5.4 242 534-877 33-277 (317)
64 3zyi_A Leucine-rich repeat-con 99.7 1.6E-17 5.6E-22 189.6 16.2 224 534-811 74-302 (452)
65 3zyj_A Leucine-rich repeat-con 99.7 2.4E-17 8.2E-22 187.6 16.2 225 534-811 63-291 (440)
66 1ozn_A Reticulon 4 receptor; N 99.7 6E-17 2.1E-21 172.7 14.0 218 561-873 14-236 (285)
67 3oja_A Leucine-rich immune mol 99.7 3.3E-17 1.1E-21 188.0 12.7 216 556-833 32-248 (487)
68 3ogk_B Coronatine-insensitive 99.7 1.3E-18 4.4E-23 206.8 -1.0 134 555-694 161-301 (592)
69 3oja_A Leucine-rich immune mol 99.7 1.5E-16 5.2E-21 182.5 12.7 236 584-922 32-270 (487)
70 1wwl_A Monocyte differentiatio 99.7 4E-17 1.4E-21 176.4 7.0 202 584-833 93-307 (312)
71 1wwl_A Monocyte differentiatio 99.7 2.2E-17 7.6E-22 178.4 5.0 104 772-925 198-307 (312)
72 3g06_A SSPH2 (leucine-rich rep 99.7 1.8E-15 6E-20 177.1 20.6 236 534-873 60-295 (622)
73 3ogk_B Coronatine-insensitive 99.7 1.8E-17 6.1E-22 196.9 2.7 157 534-694 111-278 (592)
74 1w5s_A Origin recognition comp 99.7 4E-15 1.4E-19 167.9 21.9 303 171-487 21-372 (412)
75 3qfl_A MLA10; coiled-coil, (CC 99.7 1.5E-16 5.1E-21 140.6 7.8 81 4-88 1-83 (115)
76 1z7x_W Ribonuclease inhibitor; 99.6 5.6E-19 1.9E-23 203.0 -11.5 358 534-925 27-438 (461)
77 2z62_A TOLL-like receptor 4, v 99.6 1.4E-15 4.9E-20 161.2 14.3 212 546-833 18-235 (276)
78 1h6u_A Internalin H; cell adhe 99.6 1.2E-15 4E-20 164.3 11.7 197 555-840 38-234 (308)
79 2xwt_C Thyrotropin receptor; s 99.6 2.6E-15 9E-20 155.3 13.7 81 587-673 32-116 (239)
80 2xwt_C Thyrotropin receptor; s 99.6 5.7E-15 1.9E-19 152.8 16.1 207 604-926 23-238 (239)
81 2qen_A Walker-type ATPase; unk 99.6 3.6E-14 1.2E-18 156.3 23.6 294 169-507 9-348 (350)
82 2p1m_B Transport inhibitor res 99.6 1.2E-17 4.1E-22 198.6 -5.0 136 534-672 104-245 (594)
83 2o6q_A Variable lymphocyte rec 99.6 9.1E-15 3.1E-19 154.3 17.7 175 586-833 37-216 (270)
84 1p9a_G Platelet glycoprotein I 99.6 7.3E-15 2.5E-19 156.3 16.7 197 555-833 7-206 (290)
85 3rfs_A Internalin B, repeat mo 99.6 8.3E-15 2.9E-19 154.7 15.4 81 583-672 38-119 (272)
86 1p9a_G Platelet glycoprotein I 99.6 1.7E-14 6E-19 153.4 17.6 198 582-873 6-206 (290)
87 2z62_A TOLL-like receptor 4, v 99.6 5.4E-15 1.8E-19 156.7 13.4 201 586-873 28-235 (276)
88 2o6q_A Variable lymphocyte rec 99.6 2.4E-14 8.2E-19 151.0 17.1 195 587-873 17-216 (270)
89 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.2E-20 171.4 2.5 245 559-904 48-306 (336)
90 2fna_A Conserved hypothetical 99.6 2.2E-13 7.7E-18 150.3 25.0 292 170-506 11-355 (357)
91 2ca6_A RAN GTPase-activating p 99.6 6.1E-17 2.1E-21 180.9 -6.2 253 545-833 19-314 (386)
92 1h6u_A Internalin H; cell adhe 99.5 1.6E-14 5.5E-19 155.3 12.8 139 534-691 40-178 (308)
93 4glp_A Monocyte differentiatio 99.5 1.6E-14 5.4E-19 155.8 12.1 230 535-833 64-305 (310)
94 4ay9_X Follicle-stimulating ho 99.5 5.8E-14 2E-18 154.2 16.6 100 775-899 154-255 (350)
95 2ast_B S-phase kinase-associat 99.5 6.7E-16 2.3E-20 169.1 0.9 222 536-832 48-282 (336)
96 3rfs_A Internalin B, repeat mo 99.5 2.5E-14 8.6E-19 151.0 10.7 124 535-672 41-167 (272)
97 2ca6_A RAN GTPase-activating p 99.5 5E-16 1.7E-20 173.5 -2.8 245 578-873 24-314 (386)
98 4ay9_X Follicle-stimulating ho 99.5 9.7E-14 3.3E-18 152.4 14.9 219 586-871 30-255 (350)
99 2p1m_B Transport inhibitor res 99.5 9.6E-16 3.3E-20 182.1 -2.6 111 535-648 130-245 (594)
100 4glp_A Monocyte differentiatio 99.5 1.1E-13 3.6E-18 149.3 10.8 61 614-674 90-157 (310)
101 1h6t_A Internalin B; cell adhe 99.5 1.1E-13 3.7E-18 147.4 10.7 58 773-833 154-211 (291)
102 2v1u_A Cell division control p 99.5 9.7E-12 3.3E-16 138.8 26.4 297 171-487 18-352 (387)
103 1m9s_A Internalin B; cell inva 99.4 1.1E-13 3.8E-18 161.8 10.4 60 737-812 151-210 (605)
104 3goz_A Leucine-rich repeat-con 99.4 7.5E-15 2.6E-19 162.2 -0.3 86 740-833 168-264 (362)
105 2qby_B CDC6 homolog 3, cell di 99.4 2E-11 6.7E-16 136.1 27.1 297 171-488 19-341 (384)
106 1fnn_A CDC6P, cell division co 99.4 1.2E-11 4.2E-16 138.0 24.8 298 171-488 16-353 (389)
107 3m19_A Variable lymphocyte rec 99.4 1.4E-12 4.6E-17 135.9 15.3 61 772-833 128-190 (251)
108 1m9s_A Internalin B; cell inva 99.4 4.8E-13 1.7E-17 156.3 11.6 169 583-833 40-208 (605)
109 4ezg_A Putative uncharacterize 99.4 8E-13 2.7E-17 131.9 10.8 59 772-833 133-192 (197)
110 3m19_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 135.5 12.7 152 534-696 34-189 (251)
111 1xeu_A Internalin C; cellular 99.4 3.2E-13 1.1E-17 141.3 7.4 166 585-833 18-183 (263)
112 3goz_A Leucine-rich repeat-con 99.4 4.4E-14 1.5E-18 156.0 0.7 248 542-833 5-295 (362)
113 3cvr_A Invasion plasmid antige 99.4 2E-12 6.9E-17 149.2 14.1 38 776-814 208-245 (571)
114 4ezg_A Putative uncharacterize 99.4 2E-12 7E-17 128.9 12.2 146 534-695 43-190 (197)
115 2o6s_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 132.3 10.0 123 539-674 11-136 (208)
116 3e6j_A Variable lymphocyte rec 99.4 2.2E-12 7.7E-17 131.9 12.0 143 539-695 23-168 (229)
117 3cvr_A Invasion plasmid antige 99.4 4E-12 1.4E-16 146.7 15.2 58 775-836 180-244 (571)
118 2v9t_B SLIT homolog 2 protein 99.3 2.3E-12 7.8E-17 130.9 11.0 143 539-694 15-160 (220)
119 2ell_A Acidic leucine-rich nuc 99.3 2.8E-12 9.7E-17 124.3 10.8 133 534-680 23-164 (168)
120 2qby_A CDC6 homolog 1, cell di 99.3 3.9E-11 1.3E-15 133.8 21.4 297 170-487 18-349 (386)
121 1h6t_A Internalin B; cell adhe 99.3 1E-11 3.5E-16 132.1 14.6 120 536-672 47-166 (291)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 7.7E-12 2.6E-16 127.0 12.0 145 539-695 15-162 (220)
123 1dce_A Protein (RAB geranylger 99.3 6E-14 2.1E-18 163.0 -4.4 199 555-828 346-566 (567)
124 4b8c_D Glucose-repressible alc 99.3 4.7E-12 1.6E-16 152.0 11.0 158 534-699 172-329 (727)
125 2je0_A Acidic leucine-rich nuc 99.3 4.8E-12 1.7E-16 119.9 7.3 123 535-670 17-148 (149)
126 3e6j_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 125.5 11.8 130 534-674 39-171 (229)
127 2ell_A Acidic leucine-rich nuc 99.2 1E-11 3.5E-16 120.4 8.8 130 555-697 21-158 (168)
128 1njg_A DNA polymerase III subu 99.2 5.8E-11 2E-15 123.2 15.1 197 172-385 23-231 (250)
129 2o6s_A Variable lymphocyte rec 99.2 3.1E-11 1.1E-15 121.5 12.2 130 534-674 27-160 (208)
130 2v9t_B SLIT homolog 2 protein 99.2 2.1E-11 7.1E-16 123.8 10.7 130 534-674 31-164 (220)
131 2v70_A SLIT-2, SLIT homolog 2 99.2 2.4E-11 8.2E-16 123.3 10.9 130 534-674 31-165 (220)
132 2je0_A Acidic leucine-rich nuc 99.2 6.1E-12 2.1E-16 119.2 5.8 125 556-693 15-147 (149)
133 1xeu_A Internalin C; cellular 99.2 3.7E-11 1.3E-15 125.6 12.2 144 534-697 40-183 (263)
134 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7.2E-16 119.1 7.8 127 555-695 16-149 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.2 3.3E-11 1.1E-15 117.6 8.5 128 534-674 18-152 (176)
136 1w8a_A SLIT protein; signaling 99.2 6.4E-11 2.2E-15 117.3 10.1 125 538-674 11-138 (192)
137 2chg_A Replication factor C sm 99.2 4.8E-10 1.6E-14 114.3 16.5 186 171-382 16-204 (226)
138 2xot_A Amphoterin-induced prot 99.1 3.1E-11 1.1E-15 132.8 6.6 129 534-673 38-174 (361)
139 4b8c_D Glucose-repressible alc 99.1 5.2E-11 1.8E-15 142.9 7.7 118 550-679 216-333 (727)
140 2wfh_A SLIT homolog 2 protein 99.1 2.9E-10 9.9E-15 112.5 11.2 121 539-673 14-137 (193)
141 2o6r_A Variable lymphocyte rec 99.1 2.4E-10 8.3E-15 111.6 10.3 124 538-674 10-136 (177)
142 2xot_A Amphoterin-induced prot 99.1 1.3E-10 4.5E-15 127.8 9.1 143 538-693 21-170 (361)
143 1ds9_A Outer arm dynein; leuci 99.1 3.9E-12 1.3E-16 127.0 -3.9 142 537-692 25-180 (198)
144 1dce_A Protein (RAB geranylger 99.0 4.6E-10 1.6E-14 130.4 10.1 118 559-691 442-565 (567)
145 1w8a_A SLIT protein; signaling 99.0 1E-09 3.4E-14 108.7 10.0 121 561-695 11-135 (192)
146 1sxj_B Activator 1 37 kDa subu 99.0 2.8E-09 9.6E-14 115.4 13.9 187 171-383 20-211 (323)
147 3sb4_A Hypothetical leucine ri 99.0 8.1E-10 2.8E-14 119.8 9.2 125 773-920 200-327 (329)
148 1hqc_A RUVB; extended AAA-ATPa 99.0 1.7E-09 5.7E-14 117.2 11.2 268 171-485 11-324 (324)
149 2wfh_A SLIT homolog 2 protein 99.0 2.2E-09 7.7E-14 106.1 11.0 120 561-695 13-135 (193)
150 2r9u_A Variable lymphocyte rec 98.9 2.2E-09 7.6E-14 104.1 8.2 100 561-674 15-117 (174)
151 3te6_A Regulatory protein SIR3 98.9 3.9E-08 1.3E-12 103.5 16.4 208 173-385 21-283 (318)
152 2r9u_A Variable lymphocyte rec 98.8 9.1E-09 3.1E-13 99.7 9.5 106 538-656 15-122 (174)
153 3g39_A Variable lymphocyte rec 98.8 9.1E-09 3.1E-13 99.4 8.6 101 560-674 11-114 (170)
154 1iqp_A RFCS; clamp loader, ext 98.8 3E-08 1E-12 107.5 13.1 184 171-383 24-213 (327)
155 1ds9_A Outer arm dynein; leuci 98.8 4E-10 1.4E-14 112.3 -1.7 122 534-668 47-180 (198)
156 3g39_A Variable lymphocyte rec 98.8 1.6E-08 5.5E-13 97.6 9.2 99 539-649 13-113 (170)
157 2o6r_A Variable lymphocyte rec 98.7 3.7E-08 1.2E-12 96.0 11.0 121 560-695 9-133 (177)
158 3sb4_A Hypothetical leucine ri 98.7 8.4E-08 2.9E-12 103.9 12.5 100 774-897 225-328 (329)
159 1jr3_A DNA polymerase III subu 98.6 2.3E-07 7.8E-12 102.5 15.2 195 172-382 16-221 (373)
160 2chq_A Replication factor C sm 98.6 2.2E-07 7.7E-12 100.1 12.7 183 171-382 16-204 (319)
161 1jbk_A CLPB protein; beta barr 98.5 5E-07 1.7E-11 89.2 10.9 152 171-344 21-194 (195)
162 4fdw_A Leucine rich hypothetic 98.5 1.3E-05 4.3E-10 88.7 22.5 272 557-943 112-395 (401)
163 3bos_A Putative DNA replicatio 98.4 2.9E-07 1E-11 94.6 8.5 174 172-382 28-217 (242)
164 1sxj_D Activator 1 41 kDa subu 98.4 1.6E-06 5.4E-11 94.9 14.1 195 171-381 36-234 (353)
165 4fdw_A Leucine rich hypothetic 98.4 5E-06 1.7E-10 91.9 18.1 222 553-833 131-356 (401)
166 2ifg_A High affinity nerve gro 98.4 4.4E-07 1.5E-11 99.1 9.2 84 582-672 27-113 (347)
167 3pfi_A Holliday junction ATP-d 98.4 5.2E-06 1.8E-10 90.0 16.8 179 171-382 28-227 (338)
168 2ifg_A High affinity nerve gro 98.4 4.5E-07 1.5E-11 99.0 8.3 99 540-649 13-114 (347)
169 3pvs_A Replication-associated 98.3 4.4E-06 1.5E-10 93.2 15.3 180 171-381 25-214 (447)
170 2z4s_A Chromosomal replication 98.3 5.9E-06 2E-10 92.4 14.9 161 199-380 130-304 (440)
171 4fs7_A Uncharacterized protein 98.3 5.1E-05 1.7E-09 84.1 22.2 305 552-924 65-376 (394)
172 3h4m_A Proteasome-activating n 98.3 1.2E-05 4E-10 84.9 15.8 186 170-381 15-230 (285)
173 1sxj_E Activator 1 40 kDa subu 98.3 3.5E-06 1.2E-10 92.1 11.8 197 171-382 13-237 (354)
174 3uk6_A RUVB-like 2; hexameric 98.2 1.3E-05 4.5E-10 88.1 16.4 200 171-382 43-303 (368)
175 2qz4_A Paraplegin; AAA+, SPG7, 98.2 8.3E-06 2.8E-10 84.8 13.8 188 171-381 5-221 (262)
176 3un9_A NLR family member X1; l 98.2 2.1E-07 7.2E-12 102.0 1.1 82 586-672 101-193 (372)
177 1sxj_A Activator 1 95 kDa subu 98.2 8.7E-06 3E-10 93.4 13.6 196 171-382 38-253 (516)
178 3un9_A NLR family member X1; l 98.2 5.1E-07 1.7E-11 98.9 3.0 135 534-674 100-251 (372)
179 1a5t_A Delta prime, HOLB; zinc 98.2 3.2E-05 1.1E-09 83.3 16.4 170 179-382 9-205 (334)
180 4fs7_A Uncharacterized protein 98.1 7.1E-05 2.4E-09 82.9 19.5 316 534-919 70-393 (394)
181 3u61_B DNA polymerase accessor 98.1 1.6E-05 5.4E-10 85.6 13.2 178 171-378 25-212 (324)
182 1l8q_A Chromosomal replication 98.1 4.3E-05 1.5E-09 82.1 16.3 156 199-378 37-204 (324)
183 2ra8_A Uncharacterized protein 98.1 3E-07 1E-11 99.8 -1.0 143 770-925 167-318 (362)
184 3syl_A Protein CBBX; photosynt 98.1 1.9E-05 6.6E-10 84.3 12.3 161 173-349 32-218 (309)
185 2p65_A Hypothetical protein PF 98.0 9.2E-06 3.2E-10 79.4 8.7 46 171-222 21-66 (187)
186 1sxj_C Activator 1 40 kDa subu 98.0 5.1E-05 1.7E-09 82.1 15.2 177 172-380 25-210 (340)
187 1d2n_A N-ethylmaleimide-sensit 98.0 7.4E-05 2.5E-09 78.0 15.8 171 172-373 33-228 (272)
188 2ra8_A Uncharacterized protein 98.0 2.6E-06 9E-11 92.4 4.2 66 582-649 135-204 (362)
189 3eie_A Vacuolar protein sortin 98.0 0.00012 4E-09 78.5 17.0 189 170-383 16-229 (322)
190 3n70_A Transport activator; si 98.0 4.8E-06 1.7E-10 77.6 4.9 114 173-317 2-115 (145)
191 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.0002 6.9E-09 76.4 18.0 190 170-383 10-224 (322)
192 2qp9_X Vacuolar protein sortin 97.9 0.00014 4.9E-09 78.8 16.7 187 171-382 50-261 (355)
193 3d8b_A Fidgetin-like protein 1 97.9 9.3E-05 3.2E-09 80.4 15.0 188 171-383 83-296 (357)
194 3e4g_A ATP synthase subunit S, 97.9 2.2E-06 7.4E-11 81.3 1.3 40 890-930 114-155 (176)
195 1io0_A Tropomodulin; LRR prote 97.9 4.4E-06 1.5E-10 81.5 3.3 120 552-673 30-162 (185)
196 3b9p_A CG5977-PA, isoform A; A 97.9 0.00033 1.1E-08 74.1 17.7 185 171-382 20-233 (297)
197 3ec2_A DNA replication protein 97.9 1.6E-05 5.6E-10 77.2 6.5 121 178-318 20-143 (180)
198 2w58_A DNAI, primosome compone 97.8 2.2E-05 7.7E-10 77.8 6.7 118 180-317 37-158 (202)
199 2gno_A DNA polymerase III, gam 97.8 9E-05 3.1E-09 78.1 11.4 149 176-348 1-152 (305)
200 3cf0_A Transitional endoplasmi 97.8 0.00042 1.4E-08 73.3 16.1 182 171-377 14-223 (301)
201 4gt6_A Cell surface protein; l 97.8 0.00049 1.7E-08 76.1 17.3 109 553-672 58-170 (394)
202 2zan_A Vacuolar protein sortin 97.8 0.00042 1.4E-08 77.5 16.7 190 170-382 132-345 (444)
203 1qvr_A CLPB protein; coiled co 97.7 9.2E-05 3.1E-09 90.4 11.6 155 171-347 169-344 (854)
204 3vfd_A Spastin; ATPase, microt 97.7 0.00056 1.9E-08 75.3 16.7 189 170-382 113-326 (389)
205 3e4g_A ATP synthase subunit S, 97.7 2.7E-05 9.3E-10 73.7 4.7 87 557-652 60-153 (176)
206 3co5_A Putative two-component 97.7 2.3E-05 7.9E-10 72.7 4.2 110 173-317 5-115 (143)
207 4fcw_A Chaperone protein CLPB; 97.7 0.00015 5.2E-09 77.3 11.2 138 172-317 17-169 (311)
208 1in4_A RUVB, holliday junction 97.7 0.0011 3.8E-08 71.2 18.0 178 172-382 25-223 (334)
209 3pxg_A Negative regulator of g 97.7 9.9E-05 3.4E-09 83.3 10.0 145 172-348 180-338 (468)
210 3rw6_A Nuclear RNA export fact 97.7 3.3E-05 1.1E-09 79.1 5.3 63 583-649 167-231 (267)
211 3hu3_A Transitional endoplasmi 97.6 0.00053 1.8E-08 77.2 14.8 185 172-381 204-414 (489)
212 2bjv_A PSP operon transcriptio 97.6 0.00014 4.8E-09 75.5 8.8 159 172-345 6-191 (265)
213 2kjq_A DNAA-related protein; s 97.5 5.3E-05 1.8E-09 70.5 4.6 86 200-317 37-124 (149)
214 4b4t_J 26S protease regulatory 97.5 0.0019 6.6E-08 69.5 16.8 181 170-376 146-355 (405)
215 3rw6_A Nuclear RNA export fact 97.5 2.1E-05 7.2E-10 80.6 1.3 81 612-694 167-259 (267)
216 2c9o_A RUVB-like 1; hexameric 97.5 0.00039 1.3E-08 78.2 11.4 97 280-381 297-409 (456)
217 4b4t_K 26S protease regulatory 97.5 0.0011 3.9E-08 72.4 14.4 181 169-375 169-379 (428)
218 1io0_A Tropomodulin; LRR prote 97.4 3E-05 1E-09 75.5 1.5 115 534-649 35-162 (185)
219 1ojl_A Transcriptional regulat 97.4 0.00018 6.1E-09 76.1 7.2 159 172-346 2-188 (304)
220 4b4t_L 26S protease subunit RP 97.4 0.002 6.7E-08 70.7 15.5 180 170-375 179-387 (437)
221 1lv7_A FTSH; alpha/beta domain 97.4 0.0014 4.8E-08 67.5 13.7 187 170-381 10-224 (257)
222 4gt6_A Cell surface protein; l 97.4 0.0017 5.8E-08 71.7 15.3 318 537-924 66-388 (394)
223 1ofh_A ATP-dependent HSL prote 97.4 0.00092 3.2E-08 71.1 12.6 153 172-346 15-213 (310)
224 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00065 2.2E-08 82.1 12.5 157 172-348 186-362 (758)
225 3pxi_A Negative regulator of g 97.4 0.00021 7.3E-09 86.2 7.7 156 172-348 491-675 (758)
226 4b4t_H 26S protease regulatory 97.3 0.0044 1.5E-07 67.7 16.5 178 172-375 209-415 (467)
227 3pxi_A Negative regulator of g 97.3 0.00048 1.6E-08 83.1 9.3 149 172-348 180-338 (758)
228 4h09_A Hypothetical leucine ri 97.2 0.0095 3.2E-07 65.2 18.3 67 772-841 237-304 (379)
229 4b4t_M 26S protease regulatory 97.2 0.001 3.5E-08 72.9 10.1 180 170-375 179-387 (434)
230 2ce7_A Cell division protein F 97.2 0.0048 1.6E-07 68.7 15.5 180 171-375 15-221 (476)
231 4b4t_I 26S protease regulatory 97.2 0.0032 1.1E-07 68.0 13.5 180 170-375 180-388 (437)
232 2qgz_A Helicase loader, putati 97.0 0.00044 1.5E-08 73.1 4.4 55 179-238 135-190 (308)
233 2r62_A Cell division protease 96.9 0.00028 9.7E-09 73.3 2.6 158 171-348 10-196 (268)
234 3m6a_A ATP-dependent protease 96.9 0.0015 5.2E-08 74.9 8.3 165 172-348 81-266 (543)
235 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0015 5.1E-08 78.9 8.5 135 172-317 458-607 (758)
236 1qvr_A CLPB protein; coiled co 96.8 0.0022 7.4E-08 78.3 9.6 136 172-317 558-710 (854)
237 2r44_A Uncharacterized protein 96.8 0.0056 1.9E-07 65.6 11.4 153 172-350 27-200 (331)
238 3cf2_A TER ATPase, transitiona 96.8 0.0069 2.4E-07 71.6 12.8 181 171-376 203-408 (806)
239 3t15_A Ribulose bisphosphate c 96.8 0.0064 2.2E-07 63.7 11.5 26 197-222 34-59 (293)
240 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00066 2.3E-08 70.5 3.2 68 199-288 123-192 (331)
241 4h09_A Hypothetical leucine ri 96.5 0.035 1.2E-06 60.6 15.8 128 772-923 214-342 (379)
242 2cvh_A DNA repair and recombin 96.5 0.0079 2.7E-07 60.0 9.7 84 199-288 20-115 (220)
243 2x8a_A Nuclear valosin-contain 96.5 0.018 6.1E-07 59.5 12.2 155 171-348 9-191 (274)
244 1ixz_A ATP-dependent metallopr 96.5 0.016 5.6E-07 59.2 11.8 179 170-375 14-221 (254)
245 1um8_A ATP-dependent CLP prote 96.4 0.0087 3E-07 65.4 10.2 22 200-221 73-94 (376)
246 1ypw_A Transitional endoplasmi 96.3 0.0071 2.4E-07 72.8 9.2 158 171-348 203-385 (806)
247 1jr3_D DNA polymerase III, del 96.3 0.044 1.5E-06 58.9 14.5 157 199-381 18-184 (343)
248 1iy2_A ATP-dependent metallopr 96.2 0.035 1.2E-06 57.6 12.4 181 169-375 37-245 (278)
249 2b8t_A Thymidine kinase; deoxy 96.1 0.0028 9.4E-08 62.9 3.2 114 198-319 11-127 (223)
250 2dhr_A FTSH; AAA+ protein, hex 96.0 0.032 1.1E-06 62.6 12.1 177 170-375 29-236 (499)
251 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.013 4.5E-07 59.0 8.1 114 200-318 24-168 (235)
252 1g5t_A COB(I)alamin adenosyltr 95.9 0.017 6E-07 55.3 8.0 115 200-318 29-163 (196)
253 3hr8_A Protein RECA; alpha and 95.9 0.018 6E-07 61.5 8.5 84 198-288 60-149 (356)
254 1n0w_A DNA repair protein RAD5 95.8 0.02 6.7E-07 58.1 8.3 89 199-288 24-129 (243)
255 1v5w_A DMC1, meiotic recombina 95.8 0.033 1.1E-06 59.7 10.2 57 198-255 121-181 (343)
256 2pze_A Cystic fibrosis transme 95.7 0.085 2.9E-06 52.7 12.5 23 200-222 35-57 (229)
257 2z43_A DNA repair and recombin 95.6 0.031 1.1E-06 59.4 9.5 88 199-287 107-212 (324)
258 2i1q_A DNA repair and recombin 95.6 0.025 8.5E-07 60.2 8.6 89 198-287 97-213 (322)
259 2cbz_A Multidrug resistance-as 95.6 0.055 1.9E-06 54.4 10.5 23 200-222 32-54 (237)
260 1xp8_A RECA protein, recombina 95.6 0.029 9.8E-07 60.3 8.8 83 199-288 74-162 (366)
261 1rz3_A Hypothetical protein rb 95.5 0.011 3.8E-07 58.0 5.0 42 177-221 3-44 (201)
262 1mv5_A LMRA, multidrug resista 95.5 0.086 2.9E-06 53.2 11.6 23 199-221 28-50 (243)
263 2zr9_A Protein RECA, recombina 95.4 0.033 1.1E-06 59.6 8.7 82 199-287 61-148 (349)
264 3io5_A Recombination and repai 95.4 0.038 1.3E-06 57.1 8.5 81 201-288 30-121 (333)
265 1u94_A RECA protein, recombina 95.3 0.022 7.6E-07 61.0 7.0 82 199-287 63-150 (356)
266 2ff7_A Alpha-hemolysin translo 95.1 0.099 3.4E-06 52.8 10.7 22 200-221 36-57 (247)
267 2px0_A Flagellar biosynthesis 95.0 0.032 1.1E-06 58.2 6.9 24 198-221 104-127 (296)
268 1pgv_A TMD-1, tropomodulin TMD 94.8 0.017 5.9E-07 55.6 3.8 117 555-672 38-167 (197)
269 2pjz_A Hypothetical protein ST 94.8 0.12 4.1E-06 52.7 10.4 22 200-221 31-52 (263)
270 3c8u_A Fructokinase; YP_612366 94.8 0.021 7.1E-07 56.4 4.6 37 181-221 8-44 (208)
271 3tqc_A Pantothenate kinase; bi 94.7 0.047 1.6E-06 57.3 7.1 45 175-221 70-114 (321)
272 1cr0_A DNA primase/helicase; R 94.7 0.067 2.3E-06 56.0 8.3 24 199-222 35-58 (296)
273 3ice_A Transcription terminati 94.6 0.014 4.8E-07 61.8 2.8 96 183-287 163-270 (422)
274 2bbs_A Cystic fibrosis transme 94.5 0.23 8E-06 51.3 11.8 23 200-222 65-87 (290)
275 1zp6_A Hypothetical protein AT 94.4 0.02 6.8E-07 55.6 3.4 25 198-222 8-32 (191)
276 1pzn_A RAD51, DNA repair and r 94.4 0.11 3.8E-06 55.6 9.4 48 198-245 130-181 (349)
277 4a74_A DNA repair and recombin 94.3 0.18 6.2E-06 50.3 10.3 46 198-243 24-73 (231)
278 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.028 9.6E-07 63.1 4.5 43 172-222 22-64 (500)
279 1odf_A YGR205W, hypothetical 3 94.3 0.028 9.4E-07 58.4 4.2 27 196-222 28-54 (290)
280 1vma_A Cell division protein F 94.2 0.14 4.9E-06 53.4 9.6 87 198-287 103-195 (306)
281 3dm5_A SRP54, signal recogniti 94.2 0.26 8.8E-06 54.0 11.8 24 198-221 99-122 (443)
282 3lw7_A Adenylate kinase relate 94.2 0.02 6.9E-07 54.6 2.8 19 201-219 3-21 (179)
283 3lda_A DNA repair protein RAD5 94.2 0.14 4.7E-06 55.7 9.6 56 199-255 178-237 (400)
284 1qhx_A CPT, protein (chloramph 94.1 0.021 7E-07 54.7 2.7 22 200-221 4-25 (178)
285 1sky_E F1-ATPase, F1-ATP synth 94.1 0.057 2E-06 59.2 6.3 40 201-241 153-192 (473)
286 2orw_A Thymidine kinase; TMTK, 94.0 0.006 2E-07 58.8 -1.4 22 200-221 4-25 (184)
287 3e70_C DPA, signal recognition 94.0 0.19 6.5E-06 53.0 10.0 26 197-222 127-152 (328)
288 3kb2_A SPBC2 prophage-derived 94.0 0.023 7.9E-07 54.0 2.7 21 201-221 3-23 (173)
289 1kgd_A CASK, peripheral plasma 94.0 0.022 7.6E-07 54.6 2.6 23 199-221 5-27 (180)
290 1ly1_A Polynucleotide kinase; 94.0 0.024 8.4E-07 54.3 2.9 22 200-221 3-24 (181)
291 3uie_A Adenylyl-sulfate kinase 93.9 0.028 9.4E-07 55.1 3.2 25 198-222 24-48 (200)
292 2ga8_A Hypothetical 39.9 kDa p 93.9 0.042 1.4E-06 58.0 4.6 45 175-221 2-46 (359)
293 3vaa_A Shikimate kinase, SK; s 93.9 0.022 7.5E-07 55.7 2.4 23 199-221 25-47 (199)
294 1gvn_B Zeta; postsegregational 93.9 0.045 1.5E-06 56.9 4.9 26 196-221 30-55 (287)
295 1pgv_A TMD-1, tropomodulin TMD 93.8 0.039 1.3E-06 53.1 3.8 93 578-672 33-136 (197)
296 2p5t_B PEZT; postsegregational 93.7 0.046 1.6E-06 55.7 4.6 40 181-221 15-54 (253)
297 1kag_A SKI, shikimate kinase I 93.6 0.024 8.3E-07 53.9 2.0 22 200-221 5-26 (173)
298 1knq_A Gluconate kinase; ALFA/ 93.6 0.037 1.2E-06 52.8 3.3 24 198-221 7-30 (175)
299 2rhm_A Putative kinase; P-loop 93.5 0.036 1.2E-06 53.8 3.2 24 198-221 4-27 (193)
300 4gp7_A Metallophosphoesterase; 93.5 0.031 1.1E-06 53.1 2.7 24 198-221 8-31 (171)
301 3bh0_A DNAB-like replicative h 93.5 0.29 9.9E-06 51.5 10.4 52 199-254 68-119 (315)
302 3trf_A Shikimate kinase, SK; a 93.5 0.028 9.7E-07 54.1 2.3 23 199-221 5-27 (185)
303 4a1f_A DNAB helicase, replicat 93.5 0.17 5.6E-06 53.5 8.3 53 199-255 46-98 (338)
304 1ex7_A Guanylate kinase; subst 93.4 0.022 7.4E-07 54.6 1.3 21 201-221 3-23 (186)
305 3hws_A ATP-dependent CLP prote 93.4 0.04 1.4E-06 59.8 3.6 50 173-222 16-74 (363)
306 3tau_A Guanylate kinase, GMP k 93.4 0.033 1.1E-06 54.9 2.7 25 198-222 7-31 (208)
307 1nks_A Adenylate kinase; therm 93.4 0.037 1.3E-06 53.6 3.0 22 200-221 2-23 (194)
308 4eun_A Thermoresistant glucoki 93.4 0.031 1.1E-06 54.7 2.4 24 198-221 28-51 (200)
309 1g8p_A Magnesium-chelatase 38 93.3 0.03 1E-06 60.4 2.5 46 171-222 23-68 (350)
310 3jvv_A Twitching mobility prot 93.3 0.036 1.2E-06 59.3 3.0 110 200-322 124-235 (356)
311 3asz_A Uridine kinase; cytidin 93.3 0.043 1.5E-06 54.2 3.4 24 198-221 5-28 (211)
312 2bdt_A BH3686; alpha-beta prot 93.3 0.041 1.4E-06 53.2 3.1 22 200-221 3-24 (189)
313 1ye8_A Protein THEP1, hypothet 93.3 0.039 1.3E-06 52.7 2.9 22 201-222 2-23 (178)
314 3tr0_A Guanylate kinase, GMP k 93.3 0.036 1.2E-06 54.4 2.7 22 200-221 8-29 (205)
315 2qt1_A Nicotinamide riboside k 93.2 0.049 1.7E-06 53.6 3.6 25 198-222 20-44 (207)
316 3a00_A Guanylate kinase, GMP k 93.1 0.031 1E-06 54.0 1.9 22 200-221 2-23 (186)
317 1uj2_A Uridine-cytidine kinase 93.1 0.041 1.4E-06 56.1 3.0 25 197-221 20-44 (252)
318 1uf9_A TT1252 protein; P-loop, 93.1 0.047 1.6E-06 53.5 3.3 25 197-221 6-30 (203)
319 2ffh_A Protein (FFH); SRP54, s 93.0 0.26 8.8E-06 53.8 9.3 23 199-221 98-120 (425)
320 3t61_A Gluconokinase; PSI-biol 93.0 0.033 1.1E-06 54.6 2.0 23 199-221 18-40 (202)
321 2ze6_A Isopentenyl transferase 93.0 0.043 1.5E-06 55.9 2.9 22 200-221 2-23 (253)
322 3ney_A 55 kDa erythrocyte memb 92.9 0.044 1.5E-06 52.9 2.7 24 198-221 18-41 (197)
323 1kht_A Adenylate kinase; phosp 92.9 0.042 1.4E-06 53.1 2.6 22 200-221 4-25 (192)
324 2yhs_A FTSY, cell division pro 92.9 0.22 7.5E-06 55.1 8.5 26 197-222 291-316 (503)
325 2qor_A Guanylate kinase; phosp 92.9 0.033 1.1E-06 54.7 1.8 24 198-221 11-34 (204)
326 1ukz_A Uridylate kinase; trans 92.9 0.051 1.8E-06 53.2 3.2 25 197-221 13-37 (203)
327 1y63_A LMAJ004144AAA protein; 92.9 0.047 1.6E-06 52.6 2.8 24 198-221 9-32 (184)
328 3rfe_A Platelet glycoprotein I 92.9 0.1 3.6E-06 46.6 4.9 34 616-649 32-66 (130)
329 3l0o_A Transcription terminati 92.9 0.28 9.6E-06 52.0 8.8 36 182-222 163-198 (427)
330 2j41_A Guanylate kinase; GMP, 92.8 0.042 1.4E-06 54.0 2.5 24 199-222 6-29 (207)
331 1htw_A HI0065; nucleotide-bind 92.8 0.058 2E-06 50.2 3.3 24 198-221 32-55 (158)
332 1lvg_A Guanylate kinase, GMP k 92.8 0.036 1.2E-06 54.1 1.9 22 200-221 5-26 (198)
333 3iij_A Coilin-interacting nucl 92.8 0.035 1.2E-06 53.2 1.8 23 199-221 11-33 (180)
334 2if2_A Dephospho-COA kinase; a 92.8 0.047 1.6E-06 53.5 2.8 21 201-221 3-23 (204)
335 1fx0_B ATP synthase beta chain 92.8 0.21 7E-06 55.0 8.0 64 183-252 154-218 (498)
336 2yvu_A Probable adenylyl-sulfa 92.8 0.058 2E-06 52.0 3.4 25 198-222 12-36 (186)
337 1tev_A UMP-CMP kinase; ploop, 92.8 0.05 1.7E-06 52.8 2.9 23 199-221 3-25 (196)
338 1jjv_A Dephospho-COA kinase; P 92.7 0.055 1.9E-06 53.1 3.1 22 200-221 3-24 (206)
339 2jaq_A Deoxyguanosine kinase; 92.7 0.047 1.6E-06 53.5 2.6 21 201-221 2-22 (205)
340 2j37_W Signal recognition part 92.7 0.55 1.9E-05 52.5 11.5 25 197-221 99-123 (504)
341 3aez_A Pantothenate kinase; tr 92.6 0.057 2E-06 56.7 3.3 25 197-221 88-112 (312)
342 1via_A Shikimate kinase; struc 92.6 0.041 1.4E-06 52.4 2.0 21 201-221 6-26 (175)
343 1zuh_A Shikimate kinase; alpha 92.6 0.05 1.7E-06 51.4 2.6 24 198-221 6-29 (168)
344 3umf_A Adenylate kinase; rossm 92.6 0.058 2E-06 53.1 3.1 25 197-221 27-51 (217)
345 1xjc_A MOBB protein homolog; s 92.6 0.047 1.6E-06 51.2 2.3 25 198-222 3-27 (169)
346 2c95_A Adenylate kinase 1; tra 92.5 0.051 1.7E-06 52.8 2.6 23 199-221 9-31 (196)
347 3cm0_A Adenylate kinase; ATP-b 92.5 0.06 2.1E-06 51.8 3.1 23 199-221 4-26 (186)
348 1cke_A CK, MSSA, protein (cyti 92.5 0.051 1.7E-06 54.3 2.7 22 200-221 6-27 (227)
349 1q57_A DNA primase/helicase; d 92.5 0.37 1.3E-05 54.6 10.0 55 198-255 241-295 (503)
350 1znw_A Guanylate kinase, GMP k 92.4 0.057 2E-06 53.1 2.8 23 199-221 20-42 (207)
351 3kl4_A SRP54, signal recogniti 92.4 0.34 1.1E-05 53.0 9.1 24 198-221 96-119 (433)
352 1j8m_F SRP54, signal recogniti 92.4 0.33 1.1E-05 50.5 8.7 87 199-287 98-189 (297)
353 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.06 2E-06 55.1 3.0 23 199-221 4-26 (260)
354 2ck3_D ATP synthase subunit be 92.4 0.32 1.1E-05 53.2 8.7 64 183-252 142-206 (482)
355 2cdn_A Adenylate kinase; phosp 92.3 0.062 2.1E-06 52.5 2.9 24 198-221 19-42 (201)
356 2bbw_A Adenylate kinase 4, AK4 92.3 0.06 2.1E-06 54.6 2.9 23 199-221 27-49 (246)
357 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.16 5.5E-06 53.8 6.2 106 200-320 172-277 (330)
358 1sq5_A Pantothenate kinase; P- 92.2 0.12 4.2E-06 54.3 5.2 25 197-221 78-102 (308)
359 2jeo_A Uridine-cytidine kinase 92.2 0.071 2.4E-06 54.0 3.3 24 198-221 24-47 (245)
360 1qf9_A UMP/CMP kinase, protein 92.2 0.081 2.8E-06 51.2 3.6 24 198-221 5-28 (194)
361 2hf9_A Probable hydrogenase ni 92.2 0.09 3.1E-06 52.4 4.0 25 198-222 37-61 (226)
362 2xxa_A Signal recognition part 92.2 0.32 1.1E-05 53.5 8.7 24 198-221 99-122 (433)
363 1rj9_A FTSY, signal recognitio 92.2 0.061 2.1E-06 56.2 2.8 24 198-221 101-124 (304)
364 3rfe_A Platelet glycoprotein I 92.2 0.18 6.3E-06 45.0 5.6 54 618-674 11-67 (130)
365 1z6g_A Guanylate kinase; struc 92.2 0.05 1.7E-06 54.0 2.0 23 199-221 23-45 (218)
366 2plr_A DTMP kinase, probable t 92.2 0.067 2.3E-06 52.7 3.0 23 200-222 5-27 (213)
367 2iyv_A Shikimate kinase, SK; t 92.2 0.048 1.6E-06 52.4 1.8 21 201-221 4-24 (184)
368 1ls1_A Signal recognition part 92.1 0.31 1.1E-05 50.6 8.2 24 199-222 98-121 (295)
369 3fwy_A Light-independent proto 92.1 0.069 2.4E-06 56.1 3.2 41 197-239 46-86 (314)
370 2vli_A Antibiotic resistance p 92.1 0.043 1.5E-06 52.6 1.5 23 199-221 5-27 (183)
371 2bwj_A Adenylate kinase 5; pho 92.1 0.065 2.2E-06 52.2 2.8 22 200-221 13-34 (199)
372 3upu_A ATP-dependent DNA helic 92.1 0.1 3.4E-06 58.5 4.7 22 201-222 47-68 (459)
373 1zu4_A FTSY; GTPase, signal re 92.1 0.27 9.4E-06 51.7 7.7 24 198-221 104-127 (320)
374 1s96_A Guanylate kinase, GMP k 92.1 0.062 2.1E-06 53.2 2.6 25 198-222 15-39 (219)
375 2pt5_A Shikimate kinase, SK; a 91.9 0.067 2.3E-06 50.4 2.6 21 201-221 2-22 (168)
376 3tif_A Uncharacterized ABC tra 91.9 0.11 3.8E-06 52.0 4.3 23 200-222 32-54 (235)
377 1e6c_A Shikimate kinase; phosp 91.9 0.058 2E-06 51.2 2.0 21 201-221 4-24 (173)
378 2pez_A Bifunctional 3'-phospho 91.8 0.079 2.7E-06 50.6 3.0 24 198-221 4-27 (179)
379 2pcj_A ABC transporter, lipopr 91.8 0.12 4.2E-06 51.3 4.4 23 200-222 31-53 (224)
380 2q6t_A DNAB replication FORK h 91.8 0.37 1.3E-05 53.5 8.8 53 199-254 200-252 (444)
381 4e22_A Cytidylate kinase; P-lo 91.8 0.074 2.5E-06 54.1 2.9 23 199-221 27-49 (252)
382 2f6r_A COA synthase, bifunctio 91.8 0.092 3.1E-06 54.4 3.6 25 197-221 73-97 (281)
383 3tlx_A Adenylate kinase 2; str 91.8 0.11 3.7E-06 52.6 4.0 24 198-221 28-51 (243)
384 3b9q_A Chloroplast SRP recepto 91.8 0.084 2.9E-06 55.1 3.3 25 198-222 99-123 (302)
385 2grj_A Dephospho-COA kinase; T 91.7 0.092 3.2E-06 50.7 3.3 24 198-221 11-34 (192)
386 2f1r_A Molybdopterin-guanine d 91.7 0.061 2.1E-06 50.8 1.9 23 200-222 3-25 (171)
387 2i3b_A HCR-ntpase, human cance 91.6 0.068 2.3E-06 51.5 2.2 22 201-222 3-24 (189)
388 2pbr_A DTMP kinase, thymidylat 91.6 0.075 2.6E-06 51.5 2.6 21 201-221 2-22 (195)
389 2r2a_A Uncharacterized protein 91.6 0.17 5.8E-06 49.1 5.0 19 201-219 7-25 (199)
390 1nn5_A Similar to deoxythymidy 91.6 0.078 2.7E-06 52.4 2.7 23 199-221 9-31 (215)
391 2onk_A Molybdate/tungstate ABC 91.6 0.12 4E-06 52.0 4.0 22 200-221 25-46 (240)
392 4akg_A Glutathione S-transfera 91.5 1.3 4.5E-05 59.6 14.8 227 202-482 1270-1537(2695)
393 2wsm_A Hydrogenase expression/ 91.5 0.094 3.2E-06 52.0 3.3 25 198-222 29-53 (221)
394 3gfo_A Cobalt import ATP-bindi 91.5 0.13 4.4E-06 52.8 4.3 22 200-221 35-56 (275)
395 1gtv_A TMK, thymidylate kinase 91.5 0.061 2.1E-06 53.1 1.8 21 201-221 2-22 (214)
396 1aky_A Adenylate kinase; ATP:A 91.5 0.074 2.5E-06 52.8 2.4 22 200-221 5-26 (220)
397 2wwf_A Thymidilate kinase, put 91.5 0.077 2.6E-06 52.3 2.5 24 199-222 10-33 (212)
398 1b0u_A Histidine permease; ABC 91.5 0.13 4.5E-06 52.5 4.3 23 200-222 33-55 (262)
399 1tue_A Replication protein E1; 91.4 0.1 3.5E-06 50.2 3.2 37 181-222 45-81 (212)
400 2r6a_A DNAB helicase, replicat 91.4 0.36 1.2E-05 53.8 8.2 51 199-252 203-253 (454)
401 1m7g_A Adenylylsulfate kinase; 91.4 0.097 3.3E-06 51.6 3.1 24 198-221 24-47 (211)
402 2z0h_A DTMP kinase, thymidylat 91.3 0.19 6.4E-06 48.7 5.2 21 201-221 2-22 (197)
403 2ged_A SR-beta, signal recogni 91.3 0.12 4.2E-06 49.8 3.8 25 198-222 47-71 (193)
404 1zd8_A GTP:AMP phosphotransfer 91.3 0.09 3.1E-06 52.5 2.8 23 199-221 7-29 (227)
405 3b85_A Phosphate starvation-in 91.1 0.084 2.9E-06 51.7 2.3 21 201-221 24-44 (208)
406 3cf2_A TER ATPase, transitiona 91.1 0.34 1.2E-05 57.3 7.8 53 170-222 475-534 (806)
407 2olj_A Amino acid ABC transpor 91.0 0.15 5.3E-06 51.9 4.3 23 200-222 51-73 (263)
408 3fb4_A Adenylate kinase; psych 91.0 0.095 3.2E-06 51.8 2.6 21 201-221 2-22 (216)
409 1vht_A Dephospho-COA kinase; s 91.0 0.11 3.8E-06 51.5 3.1 23 199-221 4-26 (218)
410 1sgw_A Putative ABC transporte 91.0 0.14 4.7E-06 50.4 3.7 23 200-222 36-58 (214)
411 1ji0_A ABC transporter; ATP bi 90.9 0.16 5.5E-06 51.1 4.3 23 200-222 33-55 (240)
412 2ehv_A Hypothetical protein PH 90.9 0.1 3.5E-06 53.0 2.9 23 199-221 30-52 (251)
413 4g1u_C Hemin import ATP-bindin 90.9 0.16 5.3E-06 52.0 4.2 23 200-222 38-60 (266)
414 2og2_A Putative signal recogni 90.9 0.11 3.9E-06 55.4 3.2 25 198-222 156-180 (359)
415 1vpl_A ABC transporter, ATP-bi 90.8 0.17 5.7E-06 51.4 4.3 22 200-221 42-63 (256)
416 1zak_A Adenylate kinase; ATP:A 90.8 0.085 2.9E-06 52.5 2.1 22 200-221 6-27 (222)
417 1g6h_A High-affinity branched- 90.8 0.17 5.7E-06 51.6 4.3 23 200-222 34-56 (257)
418 3dl0_A Adenylate kinase; phosp 90.8 0.1 3.5E-06 51.6 2.6 21 201-221 2-22 (216)
419 3lnc_A Guanylate kinase, GMP k 90.8 0.078 2.7E-06 53.2 1.8 22 200-221 28-50 (231)
420 3llm_A ATP-dependent RNA helic 90.7 0.84 2.9E-05 45.6 9.5 20 200-219 77-96 (235)
421 2v54_A DTMP kinase, thymidylat 90.7 0.11 3.6E-06 50.9 2.7 23 200-222 5-27 (204)
422 3d3q_A TRNA delta(2)-isopenten 90.7 0.11 3.9E-06 54.6 2.9 22 200-221 8-29 (340)
423 2ixe_A Antigen peptide transpo 90.6 0.17 6E-06 51.8 4.3 22 200-221 46-67 (271)
424 1g41_A Heat shock protein HSLU 90.6 0.14 4.8E-06 56.1 3.8 51 172-222 15-73 (444)
425 3nwj_A ATSK2; P loop, shikimat 90.6 0.09 3.1E-06 53.1 2.0 22 200-221 49-70 (250)
426 3b5x_A Lipid A export ATP-bind 90.6 0.69 2.4E-05 53.3 9.8 23 199-221 369-391 (582)
427 3cmu_A Protein RECA, recombina 90.6 0.35 1.2E-05 62.6 7.7 83 198-287 1426-1514(2050)
428 3a8t_A Adenylate isopentenyltr 90.6 0.14 4.7E-06 53.7 3.4 25 198-222 39-63 (339)
429 2r9v_A ATP synthase subunit al 90.4 0.37 1.3E-05 53.1 6.7 84 200-287 176-276 (515)
430 2yz2_A Putative ABC transporte 90.4 0.19 6.5E-06 51.4 4.3 22 200-221 34-55 (266)
431 1oix_A RAS-related protein RAB 90.4 0.16 5.3E-06 49.1 3.5 25 198-222 28-52 (191)
432 3r20_A Cytidylate kinase; stru 90.3 0.12 4.1E-06 51.4 2.7 23 199-221 9-31 (233)
433 3j16_B RLI1P; ribosome recycli 90.3 1.2 3.9E-05 51.3 11.2 123 201-326 105-289 (608)
434 2wji_A Ferrous iron transport 90.3 0.16 5.5E-06 47.6 3.4 23 200-222 4-26 (165)
435 2d2e_A SUFC protein; ABC-ATPas 90.3 0.13 4.4E-06 52.2 2.8 22 200-221 30-51 (250)
436 3ake_A Cytidylate kinase; CMP 90.3 0.12 4.1E-06 50.6 2.6 21 201-221 4-24 (208)
437 1np6_A Molybdopterin-guanine d 90.3 0.11 3.9E-06 49.1 2.3 24 199-222 6-29 (174)
438 2zej_A Dardarin, leucine-rich 90.2 0.12 4.3E-06 49.4 2.6 22 201-222 4-25 (184)
439 3p32_A Probable GTPase RV1496/ 90.2 0.23 8E-06 53.3 5.0 37 181-221 65-101 (355)
440 2zu0_C Probable ATP-dependent 90.1 0.13 4.5E-06 52.6 2.9 23 200-222 47-69 (267)
441 2vp4_A Deoxynucleoside kinase; 90.1 0.14 4.8E-06 51.2 3.0 25 197-221 18-42 (230)
442 2qi9_C Vitamin B12 import ATP- 90.1 0.14 4.6E-06 51.8 2.8 23 200-222 27-49 (249)
443 3vr4_D V-type sodium ATPase su 90.1 0.35 1.2E-05 52.6 6.1 85 201-287 153-257 (465)
444 3crm_A TRNA delta(2)-isopenten 90.0 0.14 4.7E-06 53.6 2.9 23 199-221 5-27 (323)
445 2qe7_A ATP synthase subunit al 90.0 0.32 1.1E-05 53.5 5.9 84 200-287 163-263 (502)
446 3be4_A Adenylate kinase; malar 90.0 0.14 4.7E-06 50.7 2.8 22 200-221 6-27 (217)
447 3k1j_A LON protease, ATP-depen 90.0 0.15 5.1E-06 59.3 3.5 43 172-222 41-83 (604)
448 2ghi_A Transport protein; mult 90.0 0.14 4.7E-06 52.2 2.8 23 200-222 47-69 (260)
449 1e4v_A Adenylate kinase; trans 90.0 0.14 4.8E-06 50.5 2.8 21 201-221 2-22 (214)
450 2nq2_C Hypothetical ABC transp 89.9 0.14 4.9E-06 51.9 2.9 23 200-222 32-54 (253)
451 3exa_A TRNA delta(2)-isopenten 89.9 0.15 5.1E-06 52.7 3.0 24 199-222 3-26 (322)
452 2ihy_A ABC transporter, ATP-bi 89.9 0.14 4.9E-06 52.7 2.8 23 200-222 48-70 (279)
453 3bgw_A DNAB-like replicative h 89.8 0.88 3E-05 50.3 9.4 52 198-253 196-247 (444)
454 3sr0_A Adenylate kinase; phosp 89.8 0.14 4.8E-06 50.0 2.6 21 201-221 2-22 (206)
455 3dzd_A Transcriptional regulat 89.8 0.54 1.8E-05 50.6 7.5 47 172-222 129-175 (368)
456 2eyu_A Twitching motility prot 89.8 0.17 5.8E-06 51.6 3.3 111 198-322 24-137 (261)
457 2xb4_A Adenylate kinase; ATP-b 89.8 0.14 4.7E-06 51.0 2.6 21 201-221 2-22 (223)
458 3foz_A TRNA delta(2)-isopenten 89.7 0.17 5.9E-06 52.2 3.3 24 198-221 9-32 (316)
459 1yrb_A ATP(GTP)binding protein 89.6 0.19 6.5E-06 51.4 3.6 26 196-221 11-36 (262)
460 1ak2_A Adenylate kinase isoenz 89.5 0.15 5E-06 51.2 2.6 23 199-221 16-38 (233)
461 1ny5_A Transcriptional regulat 89.4 1.9 6.5E-05 46.7 11.6 45 173-221 138-182 (387)
462 2iw3_A Elongation factor 3A; a 89.4 1.7 5.9E-05 52.4 12.0 120 200-323 462-610 (986)
463 3end_A Light-independent proto 89.3 0.28 9.6E-06 51.5 4.8 43 197-241 39-81 (307)
464 2dyk_A GTP-binding protein; GT 89.3 0.19 6.3E-06 46.7 3.0 23 200-222 2-24 (161)
465 3mfy_A V-type ATP synthase alp 89.3 0.48 1.6E-05 52.6 6.6 58 183-249 216-274 (588)
466 3sop_A Neuronal-specific septi 89.3 0.18 6.1E-06 51.7 3.1 21 201-221 4-24 (270)
467 2v9p_A Replication protein E1; 89.3 0.17 5.8E-06 52.6 2.9 24 198-221 125-148 (305)
468 3nh6_A ATP-binding cassette SU 89.2 0.16 5.6E-06 52.8 2.7 23 199-221 80-102 (306)
469 1a7j_A Phosphoribulokinase; tr 89.2 0.097 3.3E-06 54.4 1.0 24 198-221 4-27 (290)
470 3hjn_A DTMP kinase, thymidylat 89.1 0.45 1.5E-05 46.0 5.7 22 201-222 2-23 (197)
471 3zvl_A Bifunctional polynucleo 89.1 0.17 5.8E-06 55.7 2.9 26 197-222 256-281 (416)
472 2f9l_A RAB11B, member RAS onco 89.1 0.19 6.4E-06 48.9 3.0 24 199-222 5-28 (199)
473 1ltq_A Polynucleotide kinase; 89.1 0.17 6E-06 52.9 2.9 22 200-221 3-24 (301)
474 2wjg_A FEOB, ferrous iron tran 89.1 0.22 7.6E-06 47.7 3.4 25 198-222 6-30 (188)
475 1fzq_A ADP-ribosylation factor 89.0 0.25 8.5E-06 47.1 3.7 25 198-222 15-39 (181)
476 3e1s_A Exodeoxyribonuclease V, 89.0 0.41 1.4E-05 54.9 6.1 22 200-221 205-226 (574)
477 3gqb_B V-type ATP synthase bet 88.9 0.3 1E-05 53.1 4.5 88 200-287 148-260 (464)
478 2qmh_A HPR kinase/phosphorylas 88.9 0.22 7.4E-06 47.7 3.0 23 200-222 35-57 (205)
479 2ce2_X GTPase HRAS; signaling 88.9 0.19 6.4E-06 46.8 2.7 22 201-222 5-26 (166)
480 2v3c_C SRP54, signal recogniti 88.9 0.22 7.5E-06 54.8 3.6 25 198-222 98-122 (432)
481 3thx_A DNA mismatch repair pro 88.8 0.4 1.4E-05 57.9 6.0 22 198-219 661-682 (934)
482 2dr3_A UPF0273 protein PH0284; 88.5 0.28 9.6E-06 49.5 3.9 39 199-239 23-61 (247)
483 3fvq_A Fe(3+) IONS import ATP- 88.5 0.33 1.1E-05 51.6 4.5 23 200-222 31-53 (359)
484 1nlf_A Regulatory protein REPA 88.4 0.22 7.4E-06 51.5 3.0 22 200-221 31-52 (279)
485 3q72_A GTP-binding protein RAD 88.4 0.22 7.6E-06 46.4 2.8 22 201-222 4-25 (166)
486 4eaq_A DTMP kinase, thymidylat 88.3 0.24 8.1E-06 49.4 3.1 25 198-222 25-49 (229)
487 3oaa_A ATP synthase subunit al 88.3 0.96 3.3E-05 49.6 8.0 83 200-287 163-263 (513)
488 2lkc_A Translation initiation 88.3 0.29 9.9E-06 46.3 3.7 25 198-222 7-31 (178)
489 3f9v_A Minichromosome maintena 88.3 0.16 5.6E-06 58.5 2.2 22 201-222 329-350 (595)
490 1q3t_A Cytidylate kinase; nucl 88.3 0.2 6.9E-06 50.3 2.6 25 197-221 14-38 (236)
491 1svi_A GTP-binding protein YSX 88.3 0.27 9.2E-06 47.4 3.4 25 198-222 22-46 (195)
492 2c61_A A-type ATP synthase non 88.2 0.28 9.7E-06 53.6 3.9 100 183-287 141-258 (469)
493 2nzj_A GTP-binding protein REM 88.2 0.3 1E-05 45.9 3.7 24 199-222 4-27 (175)
494 1svm_A Large T antigen; AAA+ f 88.2 0.21 7.1E-06 53.8 2.7 24 198-221 168-191 (377)
495 2ocp_A DGK, deoxyguanosine kin 88.1 0.25 8.5E-06 49.7 3.2 23 199-221 2-24 (241)
496 2fn4_A P23, RAS-related protei 88.1 0.32 1.1E-05 46.0 3.8 25 198-222 8-32 (181)
497 3kta_A Chromosome segregation 88.0 0.25 8.6E-06 47.1 3.0 21 201-221 28-48 (182)
498 3con_A GTPase NRAS; structural 88.0 0.22 7.4E-06 47.9 2.5 23 200-222 22-44 (190)
499 2gj8_A MNME, tRNA modification 88.0 0.29 9.8E-06 46.2 3.3 23 200-222 5-27 (172)
500 1z2a_A RAS-related protein RAB 88.0 0.28 9.6E-06 45.8 3.3 24 199-222 5-28 (168)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.7e-48 Score=451.81 Aligned_cols=316 Identities=19% Similarity=0.261 Sum_probs=256.9
Q ss_pred eechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc--CcccccccceEEEEEeCCCC--CHHHHHHHH
Q 036345 175 RGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN--DNDVMNSFEIRMWVCVSDPF--DEFRVARAI 250 (954)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i 250 (954)
|||+.++++|.++|.... .+..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997653 24679999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHhhcCCC-------CcccHHHHHHHHHHHhcCc-eeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHh
Q 036345 251 IEALEGSAS-------NLGELQSLLQRIQTSIAGK-KFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 251 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 322 (954)
+++++.... ...+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 1234566788999999996 9999999999743212221 27999999999999998
Q ss_pred hhc-CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhhh
Q 036345 323 MME-STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQRILDSE 401 (954)
Q Consensus 323 ~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~~ 401 (954)
.++ ...+|+|++|+.++||+||.+++|... .++.+.+++++|+++|+|+|||++++|+.++.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 776 346899999999999999999987643 246788999999999999999999999999755 2 3343444444
Q ss_pred hhcccccccchhhHHHhhhcCCChhhhhHHh-----------HhcCCCCCcccchHHHHHHHHHh--cccCCCC-CchHH
Q 036345 402 MWKLKEFEKGLLAPLLLSYNDLPTMVKRCFS-----------YCAVFPKDYNIEKDELIKVWMAQ--GYIGPKE-NEEME 467 (954)
Q Consensus 402 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~e 467 (954)
.+.. ...++..++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.... +.+++
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3332 2456899999999999999999999 999999999999 8999999 9998766 56678
Q ss_pred HHHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHHHHHhhccCce
Q 036345 468 IIGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDFAQFLTKNECL 516 (954)
Q Consensus 468 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl~~~~~~~e~~ 516 (954)
++++ ||++|+++||++....+ ...+|+|||++|++|+.++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999987643 234699999999999999877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-38 Score=371.22 Aligned_cols=285 Identities=20% Similarity=0.201 Sum_probs=228.0
Q ss_pred eeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccce-EEEEEeCCCCCHHHHHHHHHH
Q 036345 174 VRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEI-RMWVCVSDPFDEFRVARAIIE 252 (954)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~ 252 (954)
.|||+.++++|.++|... +..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999753 24689999999999999999999988788999997 999999999999888888887
Q ss_pred HhhcCC------CC-----cccHHHHHHHHHHHh---cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch
Q 036345 253 ALEGSA------SN-----LGELQSLLQRIQTSI---AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 253 ~l~~~~------~~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 318 (954)
.+.... .+ ..+.+.+...+++.+ .+||+||||||||+ ...|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccCh
Confidence 654211 01 113455666777766 68999999999987 3455543 2 689999999999
Q ss_pred hHHhhhcCcceEeCC------CCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCC-CH
Q 036345 319 TVAQMMESTDVFSIK------ELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKK-TR 391 (954)
Q Consensus 319 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~-~~ 391 (954)
.++..+.....++++ +|+.+|||+||.+.. +.. . .++..+ .|+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCH
Confidence 998755444456666 999999999999984 322 1 122233 39999999999999998774 67
Q ss_pred HHHHHHHhhhhhcccccccchhhHHHhhhcCCChhh-hhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCCCchHHHHH
Q 036345 392 EEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMV-KRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKENEEMEIIG 470 (954)
Q Consensus 392 ~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~ 470 (954)
++|... ....+..+|.+||+.||+++ |.||+|||+||+++.|+++.++.+|+++| ++.+
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 788753 13458999999999999999 99999999999999999999999999987 1348
Q ss_pred HHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHHHH
Q 036345 471 QEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDFAQ 508 (954)
Q Consensus 471 ~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl~~ 508 (954)
..++++|+++||++... ...+|+|||++++++.
T Consensus 405 e~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 88999999999999731 1136899999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.6e-36 Score=386.75 Aligned_cols=312 Identities=21% Similarity=0.292 Sum_probs=246.4
Q ss_pred ccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc-cccc-ceEEEEEeCCCCC--HH
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV-MNSF-EIRMWVCVSDPFD--EF 244 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~--~~ 244 (954)
...+.||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 36789999999999999999999997543 4445 5678999998544 34
Q ss_pred HHHHHHHHHhhcCC----CCcccHHHHHHHHHHHhcCc--eeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch
Q 036345 245 RVARAIIEALEGSA----SNLGELQSLLQRIQTSIAGK--KFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 245 ~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 318 (954)
..+..++..+.... ....+.+.+...++..+.++ ||||||||||+. .+|.. .++||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 44667777776542 22356788888999999877 999999999863 33333 36799999999999
Q ss_pred hHHhh-hcCcceEeCCC-CCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHH
Q 036345 319 TVAQM-MESTDVFSIKE-LSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQR 396 (954)
Q Consensus 319 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~ 396 (954)
.++.. ++....+++.+ |++++|++||...++... +.+.+++++|+++|+|+||||+.+|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45567899996 999999999999884322 23345688999999999999999999998664 35766
Q ss_pred HHhhhhhcc----c----ccccchhhHHHhhhcCCChhhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCCCchHHH
Q 036345 397 ILDSEMWKL----K----EFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKENEEMEI 468 (954)
Q Consensus 397 ~l~~~~~~~----~----~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~ 468 (954)
.++...... . .....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HH
Confidence 665432211 1 1114588999999999999999999999999999999999999999664 46
Q ss_pred HHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHHHHHhhccC
Q 036345 469 IGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDFAQFLTKNE 514 (954)
Q Consensus 469 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl~~~~~~~e 514 (954)
.++.++++|++++|++... ++...+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 6889999999999999654 233457999999999999887655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=331.49 Aligned_cols=306 Identities=22% Similarity=0.293 Sum_probs=232.9
Q ss_pred cCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc-cccc-ceEEEEEeCCCCCHHHHH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV-MNSF-EIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~ 247 (954)
..+.||||+.++++|.++|.... +..++|+|+||||+||||||+.++++.++ ..+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34679999999999999997532 35789999999999999999999997655 7889 47999999875 344444
Q ss_pred HHH---HHHhhcC----CCCcccHHHHHHHHHHHhcC--ceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch
Q 036345 248 RAI---IEALEGS----ASNLGELQSLLQRIQTSIAG--KKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 248 ~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 318 (954)
..+ +..++.. .....+.+.....+...+.+ +++||||||+|+. ..+ ....+|++||||||+.
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l----~~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL----KAFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH----HTTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH----HHhcCCCeEEEECCCc
Confidence 444 3344321 12334567778888888865 7899999999852 222 2235789999999999
Q ss_pred hHHhhhcCcceEeC---CCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHH
Q 036345 319 TVAQMMESTDVFSI---KELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQ 395 (954)
Q Consensus 319 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~ 395 (954)
.++..+.. ..+++ ++|+.+++++||...++.. .+...+.+.+|+++|+|+|||+..+|+.++.+. ..|.
T Consensus 268 ~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 88765432 33333 6999999999999988642 122245678899999999999999999998653 3687
Q ss_pred HHHhhhhhcc--------cccccchhhHHHhhhcCCChhhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCCCchHH
Q 036345 396 RILDSEMWKL--------KEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKENEEME 467 (954)
Q Consensus 396 ~~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e 467 (954)
..+....... ......+..++..||+.||++.|.||++||+||+++.|+.+.+...|.++ .
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~ 408 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------T 408 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------H
Confidence 7665432211 11123588899999999999999999999999999999999999999653 2
Q ss_pred HHHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHHHHHhh
Q 036345 468 IIGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDFAQFLT 511 (954)
Q Consensus 468 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl~~~~~ 511 (954)
+.+..++++|++++|++.... +...+|+||+++++++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 346889999999999986432 33457899999999998773
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.1e-27 Score=292.29 Aligned_cols=386 Identities=20% Similarity=0.209 Sum_probs=248.5
Q ss_pred CCceEEEEEEecccc-CCccccccc-CcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccc-ccchh
Q 036345 534 KEKLYHLMLMINLFS-TFPVSIRYA-KKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIR-EIPKE 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~-~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~-~lp~~ 610 (954)
..++++|++..|.+. .+|..+... ++|++|++++|. +.+..|..|..++.|++|++++| .+. .+|..
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~----l~~~~p~~~~~l~~L~~L~L~~n------~l~~~ip~~ 337 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH----FYGAVPPFFGSCSLLESLALSSN------NFSGELPMD 337 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE----EEECCCGGGGGCTTCCEEECCSS------EEEEECCHH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc----CCCccchHHhcCCCccEEECCCC------cccCcCCHH
Confidence 456778888877776 466666553 888888888876 44456777788888888888888 554 67765
Q ss_pred -hhccCcCceeeccCcccc-cccccccCCC-CccEEeccccCCCccccccccC--CCCCCEEeccCccccccCCCCCCCC
Q 036345 611 -IEKLKHLRFLKLSQVDLE-ELPETCCELV-NLQTLDIEACGSLKRLPQGIGK--LVNLRHLMISHNVYLDYMPKGIERL 685 (954)
Q Consensus 611 -i~~L~~L~~L~L~~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~--l~~L~~L~l~~~~~~~~~p~~i~~L 685 (954)
++++++|++|++++|.+. .+|..+..+. +|++|++++|.....+|..+.. +++|++|++++|.....+|..++++
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 788888888888888877 7788888776 8888888888755566766665 7788888888887666777778888
Q ss_pred CCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHH
Q 036345 686 TCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHE 765 (954)
Q Consensus 686 ~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 765 (954)
++|+.|++..+...+.....+..+.+|+ .+.+.+.. +.......+..+++|+.|++++|...+.
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~~~~l~~L~~L~L~~N~l~~~----------- 481 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLR-DLKLWLNM----LEGEIPQELMYVKTLETLILDFNDLTGE----------- 481 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCC-EEECCSSC----CCSCCCGGGGGCTTCCEEECCSSCCCSC-----------
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCC-EEECCCCc----ccCcCCHHHcCCCCceEEEecCCcccCc-----------
Confidence 8888876655443333333334444444 44444322 1122233456678888888888876533
Q ss_pred HHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCCCceEeCccccc
Q 036345 766 ATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMNSVKTVGDEFLG 844 (954)
Q Consensus 766 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~ 844 (954)
++..+..+++|++|++++|.+.+.+|.|++.+++|+.|+|++|.+...+|. ++.+++|+.|++++|.....+|..++.
T Consensus 482 -~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 482 -IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp -CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred -CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 234566778888888888888866888888888888888888887766554 788888888888888744455554322
Q ss_pred CCCC---------------------------------------------------------------------------C
Q 036345 845 IGGD---------------------------------------------------------------------------N 849 (954)
Q Consensus 845 ~~~~---------------------------------------------------------------------------~ 849 (954)
.... .
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 1000 0
Q ss_pred CCCcC---CcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 850 GTSAT---SSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 850 ~~~~~---~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
.+... +.....+++|+.|+++++. +....|..+..+++|+.|++++|..-..+|..+..+++|+.|++++|+.
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~----l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHND----ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSC----CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CCcccccCCHHHhccccCCEEeCcCCc----cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 00000 0011234444555554432 2223455577888888888888865558888888888999999987742
Q ss_pred -----------------------hh----hhhccCCCCCcccccccccccc
Q 036345 927 -----------------------VK----ESFRRYTREDWSKMFHIPNILI 950 (954)
Q Consensus 927 -----------------------l~----~~~~~~~~~~~~~i~~ip~i~i 950 (954)
+. ..|....+++|++++|+|.+..
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------------
T ss_pred cccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 11 1467788999999999998764
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.5e-25 Score=268.86 Aligned_cols=343 Identities=17% Similarity=0.161 Sum_probs=258.1
Q ss_pred CCceEEEEEEeccccC------------------Cccccc--ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEe
Q 036345 534 KEKLYHLMLMINLFST------------------FPVSIR--YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKI 593 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L 593 (954)
..+++.|+++.|.+.. +|..+. .+++|++|++++|. +.+.+|..|.++++|++|+|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~----l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP----NMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT----TCCSCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC----CCccChHHHhCCCCCCEEEC
Confidence 5789999999999987 888877 99999999999997 55667888999999999999
Q ss_pred cCCCcccccc-cc--ccchhhhccC-------cCceeeccCcccccccc--cccCCCCccEEeccccCCCccccccccCC
Q 036345 594 TGESAGVEKS-IR--EIPKEIEKLK-------HLRFLKLSQVDLEELPE--TCCELVNLQTLDIEACGSLKRLPQGIGKL 661 (954)
Q Consensus 594 ~~~~~~~~~~-l~--~lp~~i~~L~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 661 (954)
++| . +. .+|..++++. +|++|+|++|.+..+|. .++++++|++|+|++|. +..+| .++.+
T Consensus 523 s~N------~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L 594 (876)
T 4ecn_A 523 ACN------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTN 594 (876)
T ss_dssp TTC------TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTT
T ss_pred cCC------CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCC
Confidence 999 4 44 4888888777 99999999999999999 99999999999999998 66999 89999
Q ss_pred CCCCEEeccCccccccCCCCCCCCCC-CCccCceEecCCccCcccccccc--cCCceeEEcCCCCCCCccccccccCc--
Q 036345 662 VNLRHLMISHNVYLDYMPKGIERLTC-LRTLRELVVSRKGCNLGGLRHLN--HLRGSFRIRGLGNVTHVDEAKNSELD-- 736 (954)
Q Consensus 662 ~~L~~L~l~~~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~l~~l~~L~--~L~~~l~i~~l~~~~~~~~~~~~~l~-- 736 (954)
++|++|++++|.. ..+|..+..+++ |+.|++..+..... -..+..+. +|+ .+.+.+..-...... ....+.
T Consensus 595 ~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~-~L~Ls~N~l~g~ip~-l~~~l~~~ 670 (876)
T 4ecn_A 595 VKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMG-SVDFSYNKIGSEGRN-ISCSMDDY 670 (876)
T ss_dssp SEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEE-EEECCSSCTTTTSSS-CSSCTTTC
T ss_pred CcceEEECcCCcc-ccchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCC-EEECcCCcCCCcccc-chhhhccc
Confidence 9999999999975 489999999998 99997765543310 01111111 121 233322111000000 001111
Q ss_pred cCCCCceEEEEecCCcccccchhhhhhHHHHhhc-CCCCCCCCEEEEeeecCCCCCCcchhc--------ccCccEEEEe
Q 036345 737 KKKNLVCLELWFDREEEEATDENEAAKHEATSEA-LRPNPNIEVLKIFQYKGKTVFPSWIMS--------LCKLKVLLLS 807 (954)
Q Consensus 737 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~lp~~~~~--------l~~L~~L~L~ 807 (954)
.+++|+.|+|++|.+... +.. +..+++|+.|++++|.+.. +|.++.. +++|+.|+|+
T Consensus 671 ~~~~L~~L~Ls~N~L~~l-------------p~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKF-------------PTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp CCCCEEEEECCSSCCCSC-------------CHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred cCCCcCEEEccCCcCCcc-------------CHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECC
Confidence 345899999999876522 111 2356899999999998886 8876653 3389999999
Q ss_pred CcCCCCcCCCCC--CCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccc--cccccccc
Q 036345 808 FCIKCEIMPPLG--KLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEW--EEWDFGEE 883 (954)
Q Consensus 808 ~c~~~~~l~~l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l--~~~~~~~~ 883 (954)
+|.+......+. .+++|+.|+|++|. +..+|..+ ..+++|+.|++++++.+ +.+....|
T Consensus 737 ~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l----------------~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 737 FNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQP----------------LNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp SSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGG----------------GGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred CCCCccchHHhhhccCCCcCEEEeCCCC-CCccchhh----------------hcCCCCCEEECCCCCCcccccccccCh
Confidence 998874444465 89999999999998 44455433 26899999999875522 23333345
Q ss_pred cccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 884 DNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 884 ~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
..+..+++|+.|+|++|. +..+|..+. ++|+.|+|++|+.
T Consensus 800 ~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp TTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTT
T ss_pred HHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCC
Confidence 667789999999999996 699999765 5999999999985
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.5e-25 Score=267.00 Aligned_cols=343 Identities=14% Similarity=0.168 Sum_probs=260.2
Q ss_pred CCceEEEEEEeccccC------------------Cccccc--ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEe
Q 036345 534 KEKLYHLMLMINLFST------------------FPVSIR--YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKI 593 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L 593 (954)
..+++.|+++.|.+.. +|..+. .+++|++|++++|. +.+.+|..+.+++.|++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP----NLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT----TCSSCCTTTTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc----CCccChHHHhcCCCCCEEEC
Confidence 5789999999999988 899988 99999999999997 55667888999999999999
Q ss_pred cCCCcccccc-cc--ccchhhhcc------CcCceeeccCcccccccc--cccCCCCccEEeccccCCCccccccccCCC
Q 036345 594 TGESAGVEKS-IR--EIPKEIEKL------KHLRFLKLSQVDLEELPE--TCCELVNLQTLDIEACGSLKRLPQGIGKLV 662 (954)
Q Consensus 594 ~~~~~~~~~~-l~--~lp~~i~~L------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 662 (954)
++| . +. .+|..++++ ++|++|++++|.++.+|. .++++++|++|++++|.....+| .+..++
T Consensus 281 s~n------~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 281 ACN------RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp TTC------TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred cCC------CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999 4 55 489888887 999999999999999999 99999999999999998444999 899999
Q ss_pred CCCEEeccCccccccCCCCCCCCCC-CCccCceEecCCccCccccccc--ccCCceeEEcCCCCCCCccccccccCc---
Q 036345 663 NLRHLMISHNVYLDYMPKGIERLTC-LRTLRELVVSRKGCNLGGLRHL--NHLRGSFRIRGLGNVTHVDEAKNSELD--- 736 (954)
Q Consensus 663 ~L~~L~l~~~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~l~~l~~L--~~L~~~l~i~~l~~~~~~~~~~~~~l~--- 736 (954)
+|++|++++|.. ..+|..+..+++ |++|++..+..... -..+..+ .+|+ .+.+.... +.......+.
T Consensus 354 ~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~-~L~Ls~N~----l~~~~p~~l~~~~ 426 (636)
T 4eco_A 354 KLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMS-AIDFSYNE----IGSVDGKNFDPLD 426 (636)
T ss_dssp EESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEE-EEECCSSC----TTTTTTCSSCTTC
T ss_pred CCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccC-EEECcCCc----CCCcchhhhcccc
Confidence 999999999965 589999999999 99997765543310 0111111 1122 23332211 1111112222
Q ss_pred ----cCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhc--------ccCccEE
Q 036345 737 ----KKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMS--------LCKLKVL 804 (954)
Q Consensus 737 ----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~--------l~~L~~L 804 (954)
.+++|+.|++++|.+.... ...+..+++|++|++++|.+.. +|..+.. +++|+.|
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp------------~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFP------------KELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCC------------THHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEE
T ss_pred cccccCCCCCEEECcCCccCcCC------------HHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEE
Confidence 5678999999998765221 1112346899999999999885 8876543 2389999
Q ss_pred EEeCcCCCCcCCCCC--CCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc--ccccccc
Q 036345 805 LLSFCIKCEIMPPLG--KLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY--EWEEWDF 880 (954)
Q Consensus 805 ~L~~c~~~~~l~~l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~--~l~~~~~ 880 (954)
+|++|.+......+. .+++|+.|+|++|. +..+|..+. .+++|+.|+++++. .-+.+..
T Consensus 494 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~----------------~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPL----------------NSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp ECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGG----------------GCSSCCEEECCSCBCTTCCBCCC
T ss_pred ECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhh----------------cCCCCCEEECCCCcccccCcccc
Confidence 999998874444455 89999999999998 444654432 68999999997654 2233333
Q ss_pred ccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcch
Q 036345 881 GEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPIV 927 (954)
Q Consensus 881 ~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 927 (954)
..|..+..+++|+.|++++|. ++.+|..+. ++|+.|++++|+..
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTC
T ss_pred cChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCc
Confidence 445667789999999999996 699998765 79999999999853
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.9e-25 Score=265.99 Aligned_cols=356 Identities=15% Similarity=0.131 Sum_probs=207.3
Q ss_pred CceEEEEEEeccccC-CcccccccCcceEEEeeccCC------cc-----------------------------------
Q 036345 535 EKLYHLMLMINLFST-FPVSIRYAKKLRSLFLVANGS------FK----------------------------------- 572 (954)
Q Consensus 535 ~~lr~L~l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~------~~----------------------------------- 572 (954)
.+|+.|++.++.+.. +|..+..+++|++|++++|.. +.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 467788888777653 677888888888888887731 00
Q ss_pred ---------------------------------ccCCCchhhhcCCCceeEEEecCCCccccccccc-------------
Q 036345 573 ---------------------------------VLSPVLPGLFDQLTFLRTLKITGESAGVEKSIRE------------- 606 (954)
Q Consensus 573 ---------------------------------~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~------------- 606 (954)
.+.+ +|..+.++++|++|+|++| .+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n------~l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS------PFVAENICEAWENENSE 233 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC------CCCGGGBSSSCSCTTSH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC------ccccccccccccccccc
Confidence 1223 5666788888888888888 5555
Q ss_pred -----cchhhh--ccCcCceeeccCcccc-cccccccCCCCccEEeccccC-CCc-cccccccCC------CCCCEEecc
Q 036345 607 -----IPKEIE--KLKHLRFLKLSQVDLE-ELPETCCELVNLQTLDIEACG-SLK-RLPQGIGKL------VNLRHLMIS 670 (954)
Q Consensus 607 -----lp~~i~--~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~-~l~-~lp~~i~~l------~~L~~L~l~ 670 (954)
+|+.++ ++++|++|+|++|.+. .+|..++++++|++|++++|. ... .+|..++++ ++|++|+++
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 788888 8888888888888755 678888888888888888886 333 588777776 888888888
Q ss_pred CccccccCCC--CCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCC-CceEEEE
Q 036345 671 HNVYLDYMPK--GIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKN-LVCLELW 747 (954)
Q Consensus 671 ~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~L~ 747 (954)
+|... .+|. .++++++|++|++..+...+..- .+..+.+|+ .+.+.+. .+. .....+..+++ |+.|+++
T Consensus 314 ~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~-~L~L~~N----~l~-~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 314 YNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA-SLNLAYN----QIT-EIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp SSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES-EEECCSS----EEE-ECCTTSEEECTTCCEEECC
T ss_pred CCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC-EEECCCC----ccc-cccHhhhhhcccCcEEEcc
Confidence 88654 7887 78888888888665544331111 333333333 3332221 011 11223444555 6666666
Q ss_pred ecCCcccccchh-------------hhhhHHHHhhcCC-------CCCCCCEEEEeeecCCCCCCcchh-cccCccEEEE
Q 036345 748 FDREEEEATDEN-------------EAAKHEATSEALR-------PNPNIEVLKIFQYKGKTVFPSWIM-SLCKLKVLLL 806 (954)
Q Consensus 748 ~~~~~~~~~~~~-------------~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L 806 (954)
+|.......... .+......+..+. .+++|++|++++|.+.. +|..+. .+++|+.|+|
T Consensus 386 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINL 464 (636)
T ss_dssp SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEEC
T ss_pred CCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEEC
Confidence 655431100000 0000000111222 33345555555555443 444333 2455555555
Q ss_pred eCcCCCCcCCCC--------CCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeecccccccccc
Q 036345 807 SFCIKCEIMPPL--------GKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEW 878 (954)
Q Consensus 807 ~~c~~~~~l~~l--------~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 878 (954)
++|.+....+.. .++++|+.|+|++|. +..+|..+.. ..+++|+.|+++++. +..+
T Consensus 465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------------~~l~~L~~L~Ls~N~-l~~i 528 (636)
T 4eco_A 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRA--------------TTLPYLVGIDLSYNS-FSKF 528 (636)
T ss_dssp CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGST--------------TTCTTCCEEECCSSC-CSSC
T ss_pred CCCCCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhh--------------ccCCCcCEEECCCCC-CCCc
Confidence 555444211111 112255555555554 3333332210 156778888887754 3333
Q ss_pred ccccccccccccccceecccc------cccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 879 DFGEEDNITVMPQLNSLKIEN------CSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 879 ~~~~~~~~~~~p~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
|..+..+++|+.|++++ |.....+|..+..+++|++|++++|..
T Consensus 529 ----p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 529 ----PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp ----CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ----ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 34456788888888843 444567787777788888888888874
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.4e-24 Score=245.12 Aligned_cols=356 Identities=16% Similarity=0.151 Sum_probs=226.2
Q ss_pred CCceEEEEEEeccccCC-cccccccCcceEEEeeccCCccccC-CCchhhhcCCCceeEEEecCCCcccccccccc-chh
Q 036345 534 KEKLYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLS-PVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKE 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~ 610 (954)
+.++++|++++|.+..+ |..+..+++|++|++++|. +. ...+..|.++++|++|+|++| .+..+ |..
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~----~~~~i~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~ 98 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT----PGLVIRNNTFRGLSSLIILKLDYN------QFLQLETGA 98 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS----TTCEECTTTTTTCTTCCEEECTTC------TTCEECTTT
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCc----ccceECcccccccccCCEEeCCCC------ccCccChhh
Confidence 56788888888887764 5677888888888888875 22 223556788888888888888 55555 677
Q ss_pred hhccCcCceeeccCccccc-cccc--ccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCccccccCCCCCCCC-
Q 036345 611 IEKLKHLRFLKLSQVDLEE-LPET--CCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVYLDYMPKGIERL- 685 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~L- 685 (954)
++++++|++|+|++|.+.. .|.. +..+++|++|++++|......|.. +..+++|++|++++|......|..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 8888888888888888874 4444 788888888888888733333554 7788888888888886655555555544
Q ss_pred -CCCCccCceEecCCccCcc--------cccccccCCceeEEcCCCCCCCccccccc---cCccCCCCceEEEEecCCcc
Q 036345 686 -TCLRTLRELVVSRKGCNLG--------GLRHLNHLRGSFRIRGLGNVTHVDEAKNS---ELDKKKNLVCLELWFDREEE 753 (954)
Q Consensus 686 -~~L~~L~~~~~~~~~~~l~--------~l~~L~~L~~~l~i~~l~~~~~~~~~~~~---~l~~~~~L~~L~L~~~~~~~ 753 (954)
.+|+.|....+........ .+..+..|+ .+.+.+.. +...... ......+|+.|.++.+....
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~----l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNG----FKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSC----CCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred cccccccccccCcccccchhhccccccccccccceee-eEecCCCc----ccccchhhhhccccccceeeEeeccccccc
Confidence 2333332221111100000 000011111 11111110 0000000 01112444444444332211
Q ss_pred cccchhh-hhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecC
Q 036345 754 EATDENE-AAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWN 831 (954)
Q Consensus 754 ~~~~~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~ 831 (954)
....... .......... ...++|++|++++|.+....|.++..+++|+.|+|++|.+....| .++.+++|+.|+|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp CCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccchhhhccCccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 0000000 0000000000 023689999999999888678889999999999999999887655 588999999999999
Q ss_pred CCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCC-C
Q 036345 832 MNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQ-L 910 (954)
Q Consensus 832 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~-~ 910 (954)
|. +..++...+ ..+++|++|+++++. +..+ .+..+..+++|+.|++++| .++.+|.. +
T Consensus 333 N~-l~~~~~~~~---------------~~l~~L~~L~Ls~N~-l~~~---~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 391 (455)
T 3v47_A 333 NF-LGSIDSRMF---------------ENLDKLEVLDLSYNH-IRAL---GDQSFLGLPNLKELALDTN-QLKSVPDGIF 391 (455)
T ss_dssp SC-CCEECGGGG---------------TTCTTCCEEECCSSC-CCEE---CTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred Cc-cCCcChhHh---------------cCcccCCEEECCCCc-cccc---ChhhccccccccEEECCCC-ccccCCHhHh
Confidence 97 566654333 268999999999874 3333 2345678999999999999 58888875 4
Q ss_pred CCCCCcceEEEecCcc
Q 036345 911 LRSTTLENLEIKKCPI 926 (954)
Q Consensus 911 ~~l~~L~~L~l~~c~~ 926 (954)
..+++|++|++++|+.
T Consensus 392 ~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTCTTCCEEECCSSCB
T ss_pred ccCCcccEEEccCCCc
Confidence 6799999999999984
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=249.74 Aligned_cols=366 Identities=15% Similarity=0.096 Sum_probs=219.4
Q ss_pred CCceEEEEEEeccccCCc-ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhh
Q 036345 534 KEKLYHLMLMINLFSTFP-VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIE 612 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 612 (954)
+.++++|++++|.+..++ ..+..+++|++|++++|. +....|..|.++++|++|+|++| .+..+|..
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N------~l~~lp~~-- 87 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR----IQYLDISVFKFNQELEYLDLSHN------KLVKISCH-- 87 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC----CCEEEGGGGTTCTTCCEEECCSS------CCCEEECC--
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc----cCCcChHHhhcccCCCEEecCCC------ceeecCcc--
Confidence 367888888888887754 567888888888888886 55555777888888888888888 67777776
Q ss_pred ccCcCceeeccCccccc--ccccccCCCCccEEeccccCCCccccccccCCCCC--CEEeccCccc--cccCCCCCCC--
Q 036345 613 KLKHLRFLKLSQVDLEE--LPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNL--RHLMISHNVY--LDYMPKGIER-- 684 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~i~~-- 684 (954)
.+++|++|+|++|.+.. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 78888888888888875 56788888888888888877 443 346667777 8888887755 3444544444
Q ss_pred ------------------------CCCCCccCceEecC-------C--ccCcccccccccCCceeEEcC-----------
Q 036345 685 ------------------------LTCLRTLRELVVSR-------K--GCNLGGLRHLNHLRGSFRIRG----------- 720 (954)
Q Consensus 685 ------------------------L~~L~~L~~~~~~~-------~--~~~l~~l~~L~~L~~~l~i~~----------- 720 (954)
+++|+.|++..+.. . ...+..+.+|. .+.+..
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS----NLTLNNIETTWNSFIRI 240 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC----EEEEEEEEEEHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh----hccccccccCHHHHHHH
Confidence 33444443333210 0 00111111111 111100
Q ss_pred -----CCCCCCccc-------cccccC-----ccCCCCceEEEEecCCcccccchhhhhh------------HHHHh--h
Q 036345 721 -----LGNVTHVDE-------AKNSEL-----DKKKNLVCLELWFDREEEEATDENEAAK------------HEATS--E 769 (954)
Q Consensus 721 -----l~~~~~~~~-------~~~~~l-----~~~~~L~~L~L~~~~~~~~~~~~~~~~~------------~~~~~--~ 769 (954)
...+..+.. .....+ ..+++|+.++++.+.. . .+....... ...+. .
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~-~p~~~~~~~~~~~~L~~L~l~~n~l~~~~ 318 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-G-FPQSYIYEIFSNMNIKNFTVSGTRMVHML 318 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-C-SCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-e-cchhhhhcccccCceeEEEcCCCcccccc
Confidence 001111110 111112 4455555555555543 1 000000000 00000 0
Q ss_pred cCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCC--cCC-CCCCCCCCceEeecCCCCceEeCcccccC-
Q 036345 770 ALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCE--IMP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGI- 845 (954)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~--~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~- 845 (954)
....+++|++|++++|.+.+.+|.++..+++|+.|+|++|.+.. .+| .++.+++|+.|++++|.....+|...+..
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 01456778888888887777667777778888888888887664 222 36777888888888877322255432211
Q ss_pred CCC-----CCCCcCCcccccC-cccceeeccccccccccccccccccccccccceecccccccCcCCCCC-CCCCCCcce
Q 036345 846 GGD-----NGTSATSSVNVAF-RKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQ-LLRSTTLEN 918 (954)
Q Consensus 846 ~~~-----~~~~~~~~~~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~-~~~l~~L~~ 918 (954)
... ..+......+..+ ++|+.|+++++. +..++ ..+..+++|+.|++++| .++.+|.. +..+++|++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip----~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIP----KQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCC----GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccc----hhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccE
Confidence 000 0011111112233 588888888764 44443 33558899999999999 58889986 778899999
Q ss_pred EEEecCcc
Q 036345 919 LEIKKCPI 926 (954)
Q Consensus 919 L~l~~c~~ 926 (954)
|++++|+.
T Consensus 473 L~l~~N~~ 480 (520)
T 2z7x_B 473 IWLHTNPW 480 (520)
T ss_dssp EECCSSCB
T ss_pred EECcCCCC
Confidence 99999984
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1e-23 Score=251.54 Aligned_cols=360 Identities=18% Similarity=0.129 Sum_probs=232.7
Q ss_pred CCceEEEEEEeccccCCcc-cccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhh
Q 036345 534 KEKLYHLMLMINLFSTFPV-SIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i 611 (954)
+..+++|++++|.+..++. .+..+++|++|++++|. +....|..|.++++|++|+|++| .+..+ |..+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~i~~~~~~~l~~L~~L~Ls~n------~l~~~~p~~~ 100 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE----IETIEDKAWHGLHHLSNLILTGN------PIQSFSPGSF 100 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTC------CCCCCCTTSS
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc----ccccCHHHhhchhhcCEeECCCC------cccccChhhc
Confidence 5789999999999887554 78899999999999986 55556777899999999999999 67776 7889
Q ss_pred hccCcCceeeccCccccccc-ccccCCCCccEEeccccCCCc-cccccccCCCCCCEEeccCccccccCCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELP-ETCCELVNLQTLDIEACGSLK-RLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLR 689 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 689 (954)
+++++|++|+|++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 99999999999999999877 779999999999999998433 5799999999999999999976555556666666655
Q ss_pred ----ccCceEecCCc--cCcccccccccC----------------------Cc-eeEEcCCCC-----------------
Q 036345 690 ----TLRELVVSRKG--CNLGGLRHLNHL----------------------RG-SFRIRGLGN----------------- 723 (954)
Q Consensus 690 ----~L~~~~~~~~~--~~l~~l~~L~~L----------------------~~-~l~i~~l~~----------------- 723 (954)
+|+...+.... .......+|..+ +. .+.+..+..
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 23322222110 000000011110 00 000100000
Q ss_pred ----------CCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCc
Q 036345 724 ----------VTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPS 793 (954)
Q Consensus 724 ----------~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~ 793 (954)
......... .+..+++|+.|+++++.... ++.+..+++|++|++.+|.+.. +|.
T Consensus 261 l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~--------------l~~l~~~~~L~~L~l~~n~l~~-lp~ 324 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKY--------------LEDVPKHFKWQSLSIIRCQLKQ-FPT 324 (606)
T ss_dssp SEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCC--------------CCCCCTTCCCSEEEEESCCCSS-CCC
T ss_pred ccHhheecccccccccccc-ccccCCCCCEEEecCccchh--------------hhhccccccCCEEEcccccCcc-ccc
Confidence 000111111 14556778888887776432 1256667788888888888744 775
Q ss_pred chhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEe---CcccccCCCC-----CCCC--cCCcccccCcc
Q 036345 794 WIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTV---GDEFLGIGGD-----NGTS--ATSSVNVAFRK 863 (954)
Q Consensus 794 ~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~---~~~~~~~~~~-----~~~~--~~~~~~~~f~~ 863 (954)
+ .+++|+.|++++|...... .++.+++|+.|++++|. +..+ +..+...... ..+. ........+++
T Consensus 325 ~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 325 L--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400 (606)
T ss_dssp C--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTT
T ss_pred C--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCC
Confidence 4 7888888888888654433 56677888888888776 4443 2211110000 0000 00011224566
Q ss_pred cceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 864 LKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 864 L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
|+.|.+.++. +...... ..+..+++|+.|++++|......|..+..+++|++|++++|..
T Consensus 401 L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 401 LQHLDFQHST-LKRVTEF--SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp CCEEECTTSE-EESTTTT--TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred CCeeECCCCc-cCCccCh--hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 7777776654 2222110 2355678888888888864455666777788888888888864
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=8e-25 Score=267.04 Aligned_cols=344 Identities=21% Similarity=0.160 Sum_probs=213.9
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccc-ccchhhh
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIR-EIPKEIE 612 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~-~lp~~i~ 612 (954)
..+++.|+++.|.+...+..+..+++|++|++++|. +.+..|..+..++.|++|++++| .+. .+|..
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~----l~~~~~~~l~~l~~L~~L~Ls~n------~l~~~~~~~-- 266 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK----LSGDFSRAISTCTELKLLNISSN------QFVGPIPPL-- 266 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC----CCSCHHHHTTTCSSCCEEECCSS------CCEESCCCC--
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc----CCCcccHHHhcCCCCCEEECCCC------cccCccCcc--
Confidence 455666777666665533336666777777776665 44445666666777777777766 332 23332
Q ss_pred ccCcCceeeccCcccc-cccccccCC-CCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCC-CCCCCCCC
Q 036345 613 KLKHLRFLKLSQVDLE-ELPETCCEL-VNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKG-IERLTCLR 689 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~-~lp~~i~~L-~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~ 689 (954)
.+++|++|+|++|.+. .+|..+..+ ++|++|++++|.....+|..++.+++|++|++++|.....+|.. +.++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 5666677777766666 566666554 66777777766644456666666777777777666554455544 56666666
Q ss_pred ccCceEecCCccCcccccccc-cCCceeEEcCCCCCCCccccccccCcc--CCCCceEEEEecCCcccccchhhhhhHHH
Q 036345 690 TLRELVVSRKGCNLGGLRHLN-HLRGSFRIRGLGNVTHVDEAKNSELDK--KKNLVCLELWFDREEEEATDENEAAKHEA 766 (954)
Q Consensus 690 ~L~~~~~~~~~~~l~~l~~L~-~L~~~l~i~~l~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 766 (954)
.|++..+...+.....+..+. .++ .+.+... .+.......+.. +++|+.|+++.|...+.
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~-~L~Ls~N----~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~------------ 409 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLL-TLDLSSN----NFSGPILPNLCQNPKNTLQELYLQNNGFTGK------------ 409 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCS-EEECCSS----EEEEECCTTTTCSTTCCCCEEECCSSEEEEE------------
T ss_pred EEeCcCCccCccccHHHHhhhcCCc-EEEccCC----CcCCCcChhhhhcccCCccEEECCCCccccc------------
Confidence 665444332211112222221 222 2222211 011111112222 56777777777755422
Q ss_pred HhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCCCceEeCcccccC
Q 036345 767 TSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMNSVKTVGDEFLGI 845 (954)
Q Consensus 767 ~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 845 (954)
++..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|.+...+|. ++.+++|+.|++++|.....+|..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--- 486 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--- 486 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG---
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH---
Confidence 234456677888888888877765788888888888888888887765554 6778888888888877433344322
Q ss_pred CCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCc
Q 036345 846 GGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCP 925 (954)
Q Consensus 846 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 925 (954)
..+++|+.|++.++.- ....|..+..+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 487 -------------~~l~~L~~L~L~~N~l----~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 487 -------------SNCTNLNWISLSNNRL----TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp -------------GGCTTCCEEECCSSCC----CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred -------------hcCCCCCEEEccCCcc----CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 2678899999988762 22223456678999999999997555888888889999999999886
Q ss_pred c
Q 036345 926 I 926 (954)
Q Consensus 926 ~ 926 (954)
.
T Consensus 550 l 550 (768)
T 3rgz_A 550 F 550 (768)
T ss_dssp E
T ss_pred c
Confidence 4
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7e-24 Score=256.23 Aligned_cols=333 Identities=13% Similarity=0.161 Sum_probs=248.7
Q ss_pred ccccCCcccccccCcceEEEeeccCCccccCC-----------------Cchhhhc--CCCceeEEEecCCCcccccccc
Q 036345 545 NLFSTFPVSIRYAKKLRSLFLVANGSFKVLSP-----------------VLPGLFD--QLTFLRTLKITGESAGVEKSIR 605 (954)
Q Consensus 545 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~-----------------~~~~~~~--~l~~Lr~L~L~~~~~~~~~~l~ 605 (954)
|.+..+|..+..+++|++|++++|. +.+ .+|..+. ++++|++|+|++|. -..
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~----Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-----l~~ 505 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-----NMT 505 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-----TCC
T ss_pred CcccchhHHHhcCCCCCEEECcCCc----CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-----CCc
Confidence 3444478899999999999999997 444 2566666 99999999999993 246
Q ss_pred ccchhhhccCcCceeeccCcc-ccc--ccccccCCC-------CccEEeccccCCCccccc--cccCCCCCCEEeccCcc
Q 036345 606 EIPKEIEKLKHLRFLKLSQVD-LEE--LPETCCELV-------NLQTLDIEACGSLKRLPQ--GIGKLVNLRHLMISHNV 673 (954)
Q Consensus 606 ~lp~~i~~L~~L~~L~L~~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~ 673 (954)
.+|..+++|++|++|+|++|. ++. +|..++.+. +|++|++++|. +..+|. .+.++++|++|++++|.
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC
Confidence 789999999999999999998 874 898887776 99999999998 669999 89999999999999997
Q ss_pred ccccCCCCCCCCCCCCccCceEecCCccCccccccccc-CCceeEEcCCCCCCCccccccccCcc--CCCCceEEEEecC
Q 036345 674 YLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNH-LRGSFRIRGLGNVTHVDEAKNSELDK--KKNLVCLELWFDR 750 (954)
Q Consensus 674 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~-L~~~l~i~~l~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~ 750 (954)
.. .+| .++.+++|+.|.+..+... .....+..+.+ |+ .+.+.+.. +..+ ...+.. .++|+.|++++|.
T Consensus 585 l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~-~L~Ls~N~-L~~l----p~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 585 VR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE-GLGFSHNK-LKYI----PNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC-EEECCSSC-CCSC----CSCCCTTCSSCEEEEECCSSC
T ss_pred cc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC-EEECcCCC-CCcC----chhhhccccCCCCEEECcCCc
Confidence 54 888 8899999999877665444 11122334444 44 45444422 1111 122333 3459999999997
Q ss_pred CcccccchhhhhhHHHHhhcCC--CCCCCCEEEEeeecCCCCCCcchh-cccCccEEEEeCcCCCCcCCCC--------C
Q 036345 751 EEEEATDENEAAKHEATSEALR--PNPNIEVLKIFQYKGKTVFPSWIM-SLCKLKVLLLSFCIKCEIMPPL--------G 819 (954)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~c~~~~~l~~l--------~ 819 (954)
+.+..+ .+...+. .+++|+.|++++|.+.. +|.++. .+++|+.|+|++|.+....+.+ .
T Consensus 656 l~g~ip---------~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 656 IGSEGR---------NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp TTTTSS---------SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CCCccc---------cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 653210 0111122 34689999999999986 898776 7899999999999877433322 2
Q ss_pred CCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccc
Q 036345 820 KLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIEN 899 (954)
Q Consensus 820 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~ 899 (954)
+|++|+.|+|++|. +..+|..+.. ..+++|+.|+++++. +..+ |..+..+++|+.|+|++
T Consensus 726 nl~~L~~L~Ls~N~-L~~lp~~l~~--------------~~l~~L~~L~Ls~N~-L~~l----p~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 726 NTYLLTTIDLRFNK-LTSLSDDFRA--------------TTLPYLSNMDVSYNC-FSSF----PTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGST--------------TTCTTCCEEECCSSC-CSSC----CCGGGGCTTCCEEECCC
T ss_pred ccCCccEEECCCCC-CccchHHhhh--------------ccCCCcCEEEeCCCC-CCcc----chhhhcCCCCCEEECCC
Confidence 34599999999997 6666654421 168999999999874 4443 34567899999999987
Q ss_pred ------cccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 900 ------CSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 900 ------c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
|.....+|..+..+++|+.|+|++|..
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 544568898899999999999999985
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-23 Score=234.47 Aligned_cols=305 Identities=19% Similarity=0.165 Sum_probs=203.6
Q ss_pred CCceEEEEEEeccccCCccc-ccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhh
Q 036345 534 KEKLYHLMLMINLFSTFPVS-IRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i 611 (954)
..+++++++.++.+..+|.. +..+++|++|+++++. +....+..|..+++|++|++++| .+..+| ..+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFN------AIRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSS------CCCCCCTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc----ccccChhhccCCCCcCEEECCCC------CCCcCCHHHh
Confidence 35566666666666665554 4566667777776664 33333445666667777777666 455543 346
Q ss_pred hccCcCceeeccCcccccccccc-cCCCCccEEeccccCCCccc-cccccCCCCCCEEeccCccccccCCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELPETC-CELVNLQTLDIEACGSLKRL-PQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLR 689 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 689 (954)
+++++|++|+|++|.+..+|..+ ..+++|++|++++|. +..+ |..+..+++|++|++++|.. ..++ ++.+++|+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLF 189 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCC-SBCC--GGGCTTCS
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcC-Cccc--cccccccc
Confidence 66677777777777666666553 666677777776665 3333 33466666777777666643 2221 33344444
Q ss_pred ccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhh
Q 036345 690 TLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSE 769 (954)
Q Consensus 690 ~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (954)
.|..... . ...+...++|+.|++++|......
T Consensus 190 ~L~l~~n-----------------------------~-----l~~~~~~~~L~~L~l~~n~l~~~~-------------- 221 (390)
T 3o6n_A 190 HANVSYN-----------------------------L-----LSTLAIPIAVEELDASHNSINVVR-------------- 221 (390)
T ss_dssp EEECCSS-----------------------------C-----CSEEECCSSCSEEECCSSCCCEEE--------------
T ss_pred eeecccc-----------------------------c-----ccccCCCCcceEEECCCCeeeecc--------------
Confidence 4322110 0 011223457889999888764321
Q ss_pred cCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCcccccCCCC
Q 036345 770 ALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGD 848 (954)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 848 (954)
...+++|+.|++++|.+.. +.++..+++|+.|+|++|.+....| .++.+++|+.|+|++|. +..++..+
T Consensus 222 -~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------ 291 (390)
T 3o6n_A 222 -GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------ 291 (390)
T ss_dssp -CCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------
T ss_pred -ccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------
Confidence 1234789999999999887 4688899999999999998877644 48899999999999998 66665422
Q ss_pred CCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcchh
Q 036345 849 NGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPIVK 928 (954)
Q Consensus 849 ~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 928 (954)
..+++|+.|+++++. +..++ ..+..+++|+.|++++|+ +..+| +..+++|+.|++++|+.-.
T Consensus 292 ----------~~l~~L~~L~L~~n~-l~~~~----~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 292 ----------QPIPTLKVLDLSHNH-LLHVE----RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ----------SCCTTCCEEECCSSC-CCCCG----GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred ----------CCCCCCCEEECCCCc-ceecC----ccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccc
Confidence 268999999999874 55443 335678999999999995 78777 4678899999999998533
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=241.00 Aligned_cols=314 Identities=19% Similarity=0.219 Sum_probs=211.2
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcC
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHL 617 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L 617 (954)
.+....+.+..+|..+ .++++.|++++|. +....+..|.++++|++|+|++| .+..+ |..++++++|
T Consensus 15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n------~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNR----IKTLNQDEFASFPHLEELELNEN------IVSAVEPGAFNNLFNL 82 (477)
T ss_dssp EEECCSCCCSSCCSCC--CTTCSEEECCSSC----CCEECTTTTTTCTTCCEEECTTS------CCCEECTTTTTTCTTC
T ss_pred EEEeCCCCcCcCCCCC--CCCCcEEECCCCc----cceECHhHccCCCCCCEEECCCC------ccCEeChhhhhCCccC
Confidence 4556666666677655 3688889998886 55555667888899999999988 66665 6778889999
Q ss_pred ceeeccCccccccccc-ccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEe
Q 036345 618 RFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVV 696 (954)
Q Consensus 618 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 696 (954)
++|+|++|.+..+|.. +.++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|.+..+
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 9999999988888765 688899999999988844455667888899999999888665555666777777777754322
Q ss_pred cCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCC
Q 036345 697 SRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPN 776 (954)
Q Consensus 697 ~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (954)
... ......+..+++|+.|++++|..... ....+..+++
T Consensus 163 ~l~-----------------------------~~~~~~l~~l~~L~~L~l~~n~i~~~------------~~~~~~~l~~ 201 (477)
T 2id5_A 163 NLT-----------------------------SIPTEALSHLHGLIVLRLRHLNINAI------------RDYSFKRLYR 201 (477)
T ss_dssp CCS-----------------------------SCCHHHHTTCTTCCEEEEESCCCCEE------------CTTCSCSCTT
T ss_pred cCc-----------------------------ccChhHhcccCCCcEEeCCCCcCcEe------------ChhhcccCcc
Confidence 111 00111234556777777777655422 1234556677
Q ss_pred CCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCC
Q 036345 777 IEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATS 855 (954)
Q Consensus 777 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 855 (954)
|++|++++|.....+|.......+|+.|+|++|.+....+ .+..+++|+.|+|++|. +..++...+
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~------------ 268 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML------------ 268 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSC------------
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhc------------
Confidence 7777777776666566665556677777777776554322 36677777777777776 555544322
Q ss_pred cccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCC-CCCCCCcceEEEecCcc
Q 036345 856 SVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQ-LLRSTTLENLEIKKCPI 926 (954)
Q Consensus 856 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 926 (954)
..+++|+.|.+.++. +..+ .+..+..+++|+.|++++| .++.+|.. +..+++|+.|++++||.
T Consensus 269 ---~~l~~L~~L~L~~n~-l~~~---~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 269 ---HELLRLQEIQLVGGQ-LAVV---EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp ---TTCTTCCEEECCSSC-CSEE---CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ---cccccCCEEECCCCc-cceE---CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 156777777777653 2222 2234556777888888777 46666653 35677777887777764
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.5e-23 Score=250.10 Aligned_cols=360 Identities=18% Similarity=0.156 Sum_probs=243.8
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcC
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHL 617 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L 617 (954)
.++.+++.++.+|..+. ++|++|++++|. +....+..|.++++|++|++++| .+..+ |..++++++|
T Consensus 15 ~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n------~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNP----LKILKSYSFSNFSELQWLDLSRC------EIETIEDKAWHGLHHL 82 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTC------CCCEECTTTTTTCTTC
T ss_pred ceEccCCCcccCCCCCC--CCcCEEECCCCC----cCEeChhhccCCccCcEEeCCCC------cccccCHHHhhchhhc
Confidence 56777777888887654 899999999997 55556667899999999999999 67776 6679999999
Q ss_pred ceeeccCcccccc-cccccCCCCccEEeccccCCCcccc-ccccCCCCCCEEeccCccccc-cCCCCCCCCCCCCccCce
Q 036345 618 RFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLP-QGIGKLVNLRHLMISHNVYLD-YMPKGIERLTCLRTLREL 694 (954)
Q Consensus 618 ~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~ 694 (954)
++|+|++|.+..+ |..++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++.
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 9999999999987 8889999999999999998 65555 679999999999999997644 578899999999999877
Q ss_pred EecCCccCcccccccccCCc---eeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccch-------------
Q 036345 695 VVSRKGCNLGGLRHLNHLRG---SFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDE------------- 758 (954)
Q Consensus 695 ~~~~~~~~l~~l~~L~~L~~---~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~------------- 758 (954)
.+...+.....+..+.+++. .+.+... .+.......+ ...+|+.|++++|.........
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n----~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLN----PIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp SSCCCEECTTTTHHHHHCTTCCCEEECTTC----CCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCcceecChhhhhhhhccccccceeeccCC----CcceeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccc
Confidence 66555333333444444332 3333221 1111111111 2236777777766542100000
Q ss_pred ---------------------------------hhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEE
Q 036345 759 ---------------------------------NEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLL 805 (954)
Q Consensus 759 ---------------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 805 (954)
.........+ .+..+++|+.|++.++.+.. +| ++..+++|+.|+
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~ 313 (606)
T 3vq2_A 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLS 313 (606)
T ss_dssp EEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEE
T ss_pred cccccccCCcccccChHHhhhhhhccHhheecccccccccccc-ccccCCCCCEEEecCccchh-hh-hccccccCCEEE
Confidence 0000011112 25667899999999999877 88 788899999999
Q ss_pred EeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCccccc-CC--CCCCCCcC-----CcccccCcccceeeccccccccc
Q 036345 806 LSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLG-IG--GDNGTSAT-----SSVNVAFRKLKELAFWGLYEWEE 877 (954)
Q Consensus 806 L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~--~~~~~~~~-----~~~~~~f~~L~~L~l~~~~~l~~ 877 (954)
+++|.+ ..+|.+ .+++|+.|++++|..+..++..... .. ....+... ......+++|++|++.++. +..
T Consensus 314 l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~ 390 (606)
T 3vq2_A 314 IIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AII 390 (606)
T ss_dssp EESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEE
T ss_pred cccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-ccc
Confidence 999998 677778 9999999999999755544211000 00 00000000 1112245666666666654 333
Q ss_pred cccccccccccccccceecccccccCcCCC-CCCCCCCCcceEEEecCcc
Q 036345 878 WDFGEEDNITVMPQLNSLKIENCSKLKSLP-DQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 878 ~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 926 (954)
++ ..+..+++|+.|++++|......| ..+..+++|+.|++++|..
T Consensus 391 ~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 391 MS----ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp EC----CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred ch----hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 22 335567888888888885333334 3566788888888888864
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.3e-23 Score=247.05 Aligned_cols=364 Identities=14% Similarity=0.043 Sum_probs=215.2
Q ss_pred CCceEEEEEEeccccCC-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhh
Q 036345 534 KEKLYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i 611 (954)
+..+++|++++|.+..+ |..+..+++|++|++++|. +....|..|.++++|++|+|++| .+..+ |..+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~ 101 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ----IYWIHEDTFQSQHRLDTLVLTAN------PLIFMAETAL 101 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTC------CCSEECTTTT
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc----cceeChhhccCccccCeeeCCCC------cccccChhhh
Confidence 56899999999999875 5678999999999999986 55556778999999999999999 66555 6789
Q ss_pred hccCcCceeeccCcccccc-cccccCCCCccEEeccccCCCcccc-ccccCCCCCCEEeccCccccccCCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLP-QGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLR 689 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 689 (954)
+++++|++|++++|.+..+ |..++.+++|++|++++|. +..++ ..+..+++|++|++++|......|..++.+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 9999999999999999987 6789999999999999998 55542 3344599999999999865544455567777777
Q ss_pred --ccCceEecCCccC--cccccccccC---------------Cc------------------------------eeEEcC
Q 036345 690 --TLRELVVSRKGCN--LGGLRHLNHL---------------RG------------------------------SFRIRG 720 (954)
Q Consensus 690 --~L~~~~~~~~~~~--l~~l~~L~~L---------------~~------------------------------~l~i~~ 720 (954)
+|+...+...+.. .-....|..+ .. .+....
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 3333222211000 0000000000 00 000000
Q ss_pred CCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccC
Q 036345 721 LGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCK 800 (954)
Q Consensus 721 l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~ 800 (954)
+.+ ..+.......+..+++|+.|++++|.... ++..+..+++|++|++++|.+....|..+..+++
T Consensus 261 l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 261 LQK-HYFFNISSNTFHCFSGLQELDLTATHLSE-------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp CTT-CCCSSCCTTTTTTCTTCSEEECTTSCCSC-------------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred eec-CccCccCHHHhccccCCCEEeccCCccCC-------------CChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 000 00111112234566778888887775432 3344555666777777766665533455666666
Q ss_pred ccEEEEeCcCCCCcCCC--CCCCCCCceEeecCCCCceEeC---cccccCC--------CCCCCCcCCcccccCccccee
Q 036345 801 LKVLLLSFCIKCEIMPP--LGKLPSLEVLSIWNMNSVKTVG---DEFLGIG--------GDNGTSATSSVNVAFRKLKEL 867 (954)
Q Consensus 801 L~~L~L~~c~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~---~~~~~~~--------~~~~~~~~~~~~~~f~~L~~L 867 (954)
|+.|++++|.....++. ++.+++|+.|++++|. +..++ ..+.... ..............+++|++|
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 66666666665433332 5566666666666665 22221 1111000 000000001111245566666
Q ss_pred eccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 868 AFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 868 ~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
++.++. +..... +..+..+++|+.|++++|..-...|..+..+++|++|++++|+.
T Consensus 406 ~l~~n~-l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 406 DLAFTR-LKVKDA--QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp ECTTCC-EECCTT--CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred ECCCCc-CCCccc--chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 665543 111111 12234566666666666643333444555666666666666653
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=2e-23 Score=246.00 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=103.1
Q ss_pred CCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcC--C-CCCCCCCCceEeecCCCCceEeCcccccCCC-
Q 036345 772 RPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIM--P-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGG- 847 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l--~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~- 847 (954)
..+++|++|++++|.+.+..|.++..+++|+.|+|++|.+.... | .++.+++|+.|++++|.....++...+....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56688999999998888767888888889999999988766422 2 3788889999999888833325544221100
Q ss_pred -----CCCCCcCCcccccC-cccceeeccccccccccccccccccccccccceecccccccCcCCCCC-CCCCCCcceEE
Q 036345 848 -----DNGTSATSSVNVAF-RKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQ-LLRSTTLENLE 920 (954)
Q Consensus 848 -----~~~~~~~~~~~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~ 920 (954)
...+......+..+ ++|+.|+++++ .++.++ ..+..+++|+.|++++| .++.+|.. +..+++|+.|+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip----~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIP----KDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCC----TTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccC----hhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence 00111111122234 58888888876 355443 33457899999999998 48888887 77889999999
Q ss_pred EecCcc
Q 036345 921 IKKCPI 926 (954)
Q Consensus 921 l~~c~~ 926 (954)
+++||.
T Consensus 504 l~~N~~ 509 (562)
T 3a79_B 504 LHDNPW 509 (562)
T ss_dssp CCSCCB
T ss_pred ecCCCc
Confidence 998884
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.7e-23 Score=246.51 Aligned_cols=363 Identities=18% Similarity=0.209 Sum_probs=242.7
Q ss_pred CCceEEEEEEeccccCC-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
+..+++|++++|.+..+ |..+..+++|++|++++|. +....+..|.++++|++|++++| .+..+|.. +
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~ 94 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR----INTIEGDAFYSLGSLEHLDLSDN------HLSSLSSSWF 94 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTS------CCCSCCHHHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC----cCccChhhccccccCCEEECCCC------ccCccCHHHh
Confidence 46899999999998874 5678999999999999997 55556677899999999999999 77777654 9
Q ss_pred hccCcCceeeccCccccc--ccccccCCCCccEEeccccCCCcccc-ccccCCCCCCEEeccCccccccCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEE--LPETCCELVNLQTLDIEACGSLKRLP-QGIGKLVNLRHLMISHNVYLDYMPKGIERLTCL 688 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 688 (954)
+++++|++|++++|.+.. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 999999999999999984 57789999999999999998677777 468999999999999997766678777777666
Q ss_pred CccCceEecCC-------------------ccCccc-----------ccccc-------------------------cCC
Q 036345 689 RTLRELVVSRK-------------------GCNLGG-----------LRHLN-------------------------HLR 713 (954)
Q Consensus 689 ~~L~~~~~~~~-------------------~~~l~~-----------l~~L~-------------------------~L~ 713 (954)
++|........ +..+.. +.+|. .+.
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 65543322111 000000 01110 000
Q ss_pred ceeEEcCC-------------------CCCCCcccc-----------------------------------cccc-CccC
Q 036345 714 GSFRIRGL-------------------GNVTHVDEA-----------------------------------KNSE-LDKK 738 (954)
Q Consensus 714 ~~l~i~~l-------------------~~~~~~~~~-----------------------------------~~~~-l~~~ 738 (954)
.+.+.++ +++..+... .... ...+
T Consensus 255 -~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 255 -EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp -EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred -ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 1111100 000000000 0000 0124
Q ss_pred CCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCC---cchhcccCccEEEEeCcCCCCcC
Q 036345 739 KNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFP---SWIMSLCKLKVLLLSFCIKCEIM 815 (954)
Q Consensus 739 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~L~L~~c~~~~~l 815 (954)
++|+.|+++.|...+.. ......+..+++|++|++++|.+.. +| ..+..+++|+.|+|++|.+....
T Consensus 334 ~~L~~L~Ls~N~l~~~~---------~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 403 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEY---------LKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMP 403 (549)
T ss_dssp TTCCEEECCSSCCCHHH---------HHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred ccccEEEccCCcccccc---------ccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccCC
Confidence 44555555544432110 0112345677889999999988776 54 34668899999999999877555
Q ss_pred CCCCCCCCCceEeecCCCCceEeCcccccC-C--CCCCCCcCCcccccCcccceeecccccccccccccccccccccccc
Q 036345 816 PPLGKLPSLEVLSIWNMNSVKTVGDEFLGI-G--GDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQL 892 (954)
Q Consensus 816 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L 892 (954)
+.++.+++|+.|++++|. +..++..+... . ....+.... ....+++|++|+++++. +..++. ...+++|
T Consensus 404 ~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N~-l~~ip~-----~~~l~~L 475 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDS-FSLFLPRLQELYISRNK-LKTLPD-----ASLFPVL 475 (549)
T ss_dssp SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSC-CSSCCC-----GGGCTTC
T ss_pred hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhh-hcccCChhcEEECCCCc-cCcCCC-----cccCccC
Confidence 557888999999999987 55554332100 0 000111111 12368899999999874 554432 2468999
Q ss_pred ceecccccccCcCCCCC-CCCCCCcceEEEecCcc
Q 036345 893 NSLKIENCSKLKSLPDQ-LLRSTTLENLEIKKCPI 926 (954)
Q Consensus 893 ~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 926 (954)
+.|++++|. ++.+|.. +..+++|+.|++++|+.
T Consensus 476 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 476 LVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCc
Confidence 999999994 7766654 67899999999999984
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.8e-23 Score=230.77 Aligned_cols=303 Identities=17% Similarity=0.236 Sum_probs=226.4
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
.++++++++.++.+..++ .+..+++|++|++++|. +.. ++. +..+++|++|++++| .+..+| .+.+
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~----i~~-~~~-~~~l~~L~~L~L~~n------~i~~~~-~~~~ 108 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQ----ITD-ISP-LSNLVKLTNLYIGTN------KITDIS-ALQN 108 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSC----CCC-CGG-GTTCTTCCEEECCSS------CCCCCG-GGTT
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccCCc----ccc-chh-hhcCCcCCEEEccCC------cccCch-HHcC
Confidence 567888999888887765 47888999999999886 444 333 788999999999998 666665 5889
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
+++|++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|.. ..++. +..+++|+.|++
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSL 184 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEEC
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEc
Confidence 9999999999999988876 88999999999999875666554 88899999999998854 33333 566666666643
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
..+. + ... ..+..+++|+.|++++|...... .+..
T Consensus 185 ~~n~-----l---------------------~~~-----~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~ 219 (347)
T 4fmz_A 185 NYNQ-----I---------------------EDI-----SPLASLTSLHYFTAYVNQITDIT--------------PVAN 219 (347)
T ss_dssp TTSC-----C---------------------CCC-----GGGGGCTTCCEEECCSSCCCCCG--------------GGGG
T ss_pred cCCc-----c---------------------ccc-----ccccCCCccceeecccCCCCCCc--------------hhhc
Confidence 2110 0 111 11456678888998888654321 1556
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCc
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSA 853 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 853 (954)
+++|++|++++|.+.. +|. +..+++|+.|+|++|.+.. ++.+..+++|+.|++++|. +..++.
T Consensus 220 ~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~------------- 282 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDISV------------- 282 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG-------------
T ss_pred CCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCChh-------------
Confidence 7899999999998887 665 7789999999999997655 4678899999999999986 544421
Q ss_pred CCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 854 TSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 854 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
...+++|+.|++.++. +... .+..+..+++|+.|++++|+ +..++. +..+++|++|++++|+.
T Consensus 283 ----~~~l~~L~~L~L~~n~-l~~~---~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 283 ----LNNLSQLNSLFLNNNQ-LGNE---DMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp ----GGGCTTCSEEECCSSC-CCGG---GHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred ----hcCCCCCCEEECcCCc-CCCc---ChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 1268999999999875 3222 22335678999999999996 766665 67889999999999973
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.3e-23 Score=245.40 Aligned_cols=304 Identities=18% Similarity=0.150 Sum_probs=189.1
Q ss_pred CceEEEEEEeccccCCccc-ccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhh
Q 036345 535 EKLYHLMLMINLFSTFPVS-IRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIE 612 (954)
Q Consensus 535 ~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~ 612 (954)
.+++.+++.++.+..+|.. +..+++|++|++++|. +....+..|..+++|++|+|++| .+..+|. .++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~ 120 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFN------AIRYLPPHVFQ 120 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSS------CCCCCCTTTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC----CCCCChHHhcCCCCCCEEECCCC------cCCCCCHHHHc
Confidence 3445555555555544443 3445555555555554 33333334555555555555555 4444432 345
Q ss_pred ccCcCceeeccCcccccccccc-cCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCcc
Q 036345 613 KLKHLRFLKLSQVDLEELPETC-CELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTL 691 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 691 (954)
++++|++|+|++|.+..+|..+ +.+++|++|+|++|......|..+..+++|++|++++|.. ..+| ++.+++|+.|
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L 197 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHA 197 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEE
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhh
Confidence 5555555555555555555442 5555555555555552222233455555555555555532 2221 2233333333
Q ss_pred CceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcC
Q 036345 692 RELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEAL 771 (954)
Q Consensus 692 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l 771 (954)
.+ ... ....+....+|+.|++++|...... .
T Consensus 198 ~l-------------------------~~n---------~l~~l~~~~~L~~L~ls~n~l~~~~-------------~-- 228 (597)
T 3oja_B 198 NV-------------------------SYN---------LLSTLAIPIAVEELDASHNSINVVR-------------G-- 228 (597)
T ss_dssp EC-------------------------CSS---------CCSEEECCTTCSEEECCSSCCCEEE-------------C--
T ss_pred hc-------------------------ccC---------ccccccCCchhheeeccCCcccccc-------------c--
Confidence 21 110 0011233457889999888764321 1
Q ss_pred CCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCcccccCCCCCC
Q 036345 772 RPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNG 850 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 850 (954)
..+++|+.|++++|.+.. +.++..+++|+.|+|++|.+....| .++.+++|+.|+|++|. +..++..+
T Consensus 229 ~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-------- 297 (597)
T 3oja_B 229 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-------- 297 (597)
T ss_dssp SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS--------
T ss_pred ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc--------
Confidence 123689999999999887 6788899999999999999877655 48899999999999988 66665322
Q ss_pred CCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcch
Q 036345 851 TSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPIV 927 (954)
Q Consensus 851 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 927 (954)
..+|+|+.|+++++. +..++ ..+..+++|+.|++++|. +..+| +..+++|+.|++++|+.-
T Consensus 298 --------~~l~~L~~L~Ls~N~-l~~i~----~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 298 --------QPIPTLKVLDLSHNH-LLHVE----RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp --------SCCTTCCEEECCSSC-CCCCG----GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred --------ccCCCCcEEECCCCC-CCccC----cccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCC
Confidence 268999999999875 44443 345679999999999995 77776 467889999999999853
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.2e-22 Score=248.10 Aligned_cols=345 Identities=20% Similarity=0.241 Sum_probs=228.4
Q ss_pred CCCceEEEEEEeccccCC-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chh
Q 036345 533 SKEKLYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKE 610 (954)
Q Consensus 533 ~~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~ 610 (954)
.+.++++|+++.|.+..+ +..+..+++|++|++++|.. .....|..|.++++|++|+|++| .+..+ |+.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~N------~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSS------KIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTTC------CCCEECTTS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCCC------cCcccCHhH
Confidence 478899999999998874 67889999999999999852 22233677899999999999999 66666 788
Q ss_pred hhccCcCceeeccCccccc-cccc--ccCCCCccEEeccccCCCccc--cccccCCCCCCEEeccCccccccCCCCCCCC
Q 036345 611 IEKLKHLRFLKLSQVDLEE-LPET--CCELVNLQTLDIEACGSLKRL--PQGIGKLVNLRHLMISHNVYLDYMPKGIERL 685 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L 685 (954)
++++++|++|+|++|.+.. +|.. ++++++|++|++++|. +..+ +..++++++|++|++++|......|..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999885 5655 8999999999999998 4444 3568999999999999987655566666655
Q ss_pred --CCCCccCceEecCCcc---Ccccccc-cc--cCCceeEEcCCCCC--------------------------------C
Q 036345 686 --TCLRTLRELVVSRKGC---NLGGLRH-LN--HLRGSFRIRGLGNV--------------------------------T 725 (954)
Q Consensus 686 --~~L~~L~~~~~~~~~~---~l~~l~~-L~--~L~~~l~i~~l~~~--------------------------------~ 725 (954)
++|+.|.+..+...+. .+..+.+ +. .++ .+.+.+..-. .
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 6677665544333211 1111111 00 011 1111111000 0
Q ss_pred CccccccccCc--cCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccE
Q 036345 726 HVDEAKNSELD--KKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKV 803 (954)
Q Consensus 726 ~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 803 (954)
.+.......+. ..++|+.|++++|..... ....+..+++|+.|++++|.+....|..+..+++|+.
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSL------------NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEE------------CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccCCCChhhhhccccCCccEEECCCCccccc------------ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 00000001111 136788888877765422 2344667788888888888877745667778888888
Q ss_pred EEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeecccccccccccccc
Q 036345 804 LLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGE 882 (954)
Q Consensus 804 L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 882 (954)
|+|++|.+....+ .++.+++|+.|++++|. +..++...+ ..+++|+.|+++++. +..+
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~---------------~~l~~L~~L~Ls~N~-l~~i---- 377 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF---------------KFLEKLQTLDLRDNA-LTTI---- 377 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS---------------CSCCCCCEEEEETCC-SCCC----
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh---------------cCCCCCCEEECCCCC-CCcc----
Confidence 8888887766544 47788888888888886 555443322 256777777777653 2221
Q ss_pred ccccccccccceecccccccCcCCCCC----------------------CCCCCCcceEEEecCcc
Q 036345 883 EDNITVMPQLNSLKIENCSKLKSLPDQ----------------------LLRSTTLENLEIKKCPI 926 (954)
Q Consensus 883 ~~~~~~~p~L~~L~l~~c~~l~~lp~~----------------------~~~l~~L~~L~l~~c~~ 926 (954)
..+|+|+.|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 378 ----~~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 378 ----HFIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp ----SSCCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ----cCCCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 235566666666653 4444432 22577888888888763
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4e-23 Score=244.60 Aligned_cols=145 Identities=23% Similarity=0.261 Sum_probs=121.0
Q ss_pred CCceEEEEEEeccccCCc-ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhh
Q 036345 534 KEKLYHLMLMINLFSTFP-VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i 611 (954)
+..+++|++++|.+..++ ..+..+++|++|++++|. +....+..|.++++|++|+|++| .+..+| ..+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~ 96 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGN------PIQSLALGAF 96 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTC------CCCEECTTTT
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCc----CCccCcccccCchhCCEEeCcCC------cCCccCHhhh
Confidence 568999999999988754 478899999999999986 55555677899999999999999 677665 679
Q ss_pred hccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCc-cccccccCCCCCCEEeccCccccccCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLK-RLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCL 688 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 688 (954)
+++++|++|++++|.+..+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 999999999999999998876 69999999999999997333 478999999999999999986554445566666666
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.7e-23 Score=246.66 Aligned_cols=279 Identities=17% Similarity=0.160 Sum_probs=167.7
Q ss_pred hhccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCC-CCCCCCCC
Q 036345 611 IEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKG-IERLTCLR 689 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~ 689 (954)
++++++|++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|.....+|.. ++.+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 66666777777777776677766667777777777766633333455666677777777666544444443 56666666
Q ss_pred ccCceEecCCccC--cccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHH
Q 036345 690 TLRELVVSRKGCN--LGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEAT 767 (954)
Q Consensus 690 ~L~~~~~~~~~~~--l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 767 (954)
.|++..+...+.. ...+..+.+|+ .+.+.+. .+.......+..+++|+.|++++|...... .
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~ 417 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQ-SLNLSYN----EPLSLKTEAFKECPQLELLDLAFTRLKVKD-----------A 417 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCC-EEECCSC----SCEEECTTTTTTCTTCSEEECTTCCEECCT-----------T
T ss_pred EEECCCCccccccCcchhcccCCCCC-EEECCCC----cCCcCCHHHhcCCccCCeEECCCCcCCCcc-----------c
Confidence 6655443332111 11222223332 3333221 111222234556677777777666543211 1
Q ss_pred hhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCc-C---CCCCCCCCCceEeecCCCCceEeCcccc
Q 036345 768 SEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEI-M---PPLGKLPSLEVLSIWNMNSVKTVGDEFL 843 (954)
Q Consensus 768 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~-l---~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 843 (954)
...+..+++|++|++++|.+....|.++..+++|+.|+|++|.+... + ..++.+++|+.|++++|. +..++...+
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 496 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAF 496 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTT
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhh
Confidence 12255667788888887777665566677778888888888776542 2 236677888888888776 444433222
Q ss_pred cCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCC-CCCCCCCCcceEEEe
Q 036345 844 GIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLP-DQLLRSTTLENLEIK 922 (954)
Q Consensus 844 ~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~ 922 (954)
..+++|+.|+++++. +.. ..+..+..+++| .|++++|. +..+| ..+..+++|+.|+++
T Consensus 497 ---------------~~l~~L~~L~Ls~N~-l~~---~~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 497 ---------------TSLKMMNHVDLSHNR-LTS---SSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp ---------------TTCTTCCEEECCSSC-CCG---GGGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECT
T ss_pred ---------------ccccCCCEEECCCCc-cCc---CChhHhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCC
Confidence 267888899888764 222 223456678888 89999985 55554 345667899999999
Q ss_pred cCcch
Q 036345 923 KCPIV 927 (954)
Q Consensus 923 ~c~~l 927 (954)
+||..
T Consensus 556 ~N~~~ 560 (606)
T 3t6q_A 556 QNPLD 560 (606)
T ss_dssp TCCEE
T ss_pred CCCcc
Confidence 98853
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=4.9e-23 Score=249.07 Aligned_cols=154 Identities=20% Similarity=0.229 Sum_probs=125.0
Q ss_pred CCceEEEEEEeccccCCcc-cccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hh
Q 036345 534 KEKLYHLMLMINLFSTFPV-SIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i 611 (954)
+.++++|++++|.+..++. .+..+++|++|++++|. +....|..|.++++|++|+|++| .+..+|. .+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n------~l~~l~~~~~ 93 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKLPMLKVLNLQHN------ELSQLSDKTF 93 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC----CCCCCTTHHHHCTTCCEEECCSS------CCCCCCTTTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc----cCccCHHHHhcccCcCEEECCCC------ccCccChhhh
Confidence 5789999999999888665 58899999999999986 56667788899999999999999 7788876 59
Q ss_pred hccCcCceeeccCccccccc-ccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCC--CCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELP-ETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGI--ERLTCL 688 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i--~~L~~L 688 (954)
+++++|++|+|++|.+..+| ..++++++|++|++++|......|..+.++++|++|++++|......|..+ ..+++|
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 99999999999999999886 579999999999999998555556678899999999999986433323222 244677
Q ss_pred CccCceEec
Q 036345 689 RTLRELVVS 697 (954)
Q Consensus 689 ~~L~~~~~~ 697 (954)
+.|++..+.
T Consensus 174 ~~L~L~~n~ 182 (680)
T 1ziw_A 174 KKLELSSNQ 182 (680)
T ss_dssp SEEECTTCC
T ss_pred cEEECCCCc
Confidence 777655443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1e-22 Score=233.86 Aligned_cols=322 Identities=19% Similarity=0.239 Sum_probs=170.2
Q ss_pred ceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccC
Q 036345 536 KLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLK 615 (954)
Q Consensus 536 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~ 615 (954)
+++.+++.++.+..+| .+..+++|++|++++|. +... +. +.++++|++|++++| .+..++. +++++
T Consensus 47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~----l~~~-~~-~~~l~~L~~L~l~~n------~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ----LTDI-TP-LKNLTKLVDILMNNN------QIADITP-LANLT 112 (466)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSC----CCCC-GG-GTTCTTCCEEECCSS------CCCCCGG-GTTCT
T ss_pred cccEEecCCCCCccCc-chhhhcCCCEEECCCCc----cCCc-hh-hhccccCCEEECCCC------ccccChh-hcCCC
Confidence 3444444444444433 24444555555555443 2221 11 444555555555544 3333333 44555
Q ss_pred cCceeeccCcccccccccccCCCCccEEeccccCCCccccc--------------------cccCCCCCCEEeccCcccc
Q 036345 616 HLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQ--------------------GIGKLVNLRHLMISHNVYL 675 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--------------------~i~~l~~L~~L~l~~~~~~ 675 (954)
+|++|++++|.+..+|. +..+++|++|++++|. +..+|. .+.++++|++|++++|..
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l- 189 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV- 189 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-
Confidence 55555555555444443 4445555555555444 333332 144555555555555432
Q ss_pred ccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccc
Q 036345 676 DYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEA 755 (954)
Q Consensus 676 ~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 755 (954)
..++ .+..+++|+.|.+..+...+ +..+..+.+|+ .+.+.+.. +.. ...+..+++|+.|++++|.....
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~-~L~l~~n~-l~~-----~~~l~~l~~L~~L~l~~n~l~~~- 258 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQISD--ITPLGILTNLD-ELSLNGNQ-LKD-----IGTLASLTNLTDLDLANNQISNL- 258 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCC--CGGGGGCTTCC-EEECCSSC-CCC-----CGGGGGCTTCSEEECCSSCCCCC-
T ss_pred CCCh-hhccCCCCCEEEecCCcccc--cccccccCCCC-EEECCCCC-ccc-----chhhhcCCCCCEEECCCCccccc-
Confidence 2222 24444445444433322211 00111222222 22222211 111 12344566677777766654321
Q ss_pred cchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCc
Q 036345 756 TDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSV 835 (954)
Q Consensus 756 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l 835 (954)
..+..+++|++|++++|.+.. +|. +..+++|+.|+|++|.+... ++++.+++|+.|++++|. +
T Consensus 259 -------------~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~-l 321 (466)
T 1o6v_A 259 -------------APLSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNN-I 321 (466)
T ss_dssp -------------GGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSSC-C
T ss_pred -------------hhhhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hhhcCCCCCCEEECcCCc-C
Confidence 114556777777777777666 444 56677777777777765543 336677777777777776 3
Q ss_pred eEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCC
Q 036345 836 KTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTT 915 (954)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~ 915 (954)
..++. ...+++|+.|++.++. +... ..+..+++|+.|++++|. +..++. +..+++
T Consensus 322 ~~~~~-----------------~~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 376 (466)
T 1o6v_A 322 SDISP-----------------VSSLTKLQRLFFYNNK-VSDV-----SSLANLTNINWLSAGHNQ-ISDLTP-LANLTR 376 (466)
T ss_dssp SCCGG-----------------GGGCTTCCEEECCSSC-CCCC-----GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTT
T ss_pred CCchh-----------------hccCccCCEeECCCCc-cCCc-----hhhccCCCCCEEeCCCCc-cCccch-hhcCCC
Confidence 32221 1268889999998874 4443 235678999999999995 555544 678899
Q ss_pred cceEEEecCcch
Q 036345 916 LENLEIKKCPIV 927 (954)
Q Consensus 916 L~~L~l~~c~~l 927 (954)
|+.|++++|+..
T Consensus 377 L~~L~l~~n~~~ 388 (466)
T 1o6v_A 377 ITQLGLNDQAWT 388 (466)
T ss_dssp CCEEECCCEEEE
T ss_pred CCEEeccCCccc
Confidence 999999998743
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=239.67 Aligned_cols=131 Identities=23% Similarity=0.251 Sum_probs=107.7
Q ss_pred CCceEEEEEEeccccCCc-ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hh
Q 036345 534 KEKLYHLMLMINLFSTFP-VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i 611 (954)
..++++|++++|.+..++ ..+..+++|++|++++|. +....+..|.++++|++|++++| .+..+|. .+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n------~l~~l~~~~~ 120 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSLALGAFSGLSSLQKLVAVET------NLASLENFPI 120 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTS------CCCCSTTCSC
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc----CCccCHhhhcCcccccccccccc------ccccCCCccc
Confidence 578999999999887754 568899999999999987 55555677899999999999999 6777765 58
Q ss_pred hccCcCceeeccCccccc--ccccccCCCCccEEeccccCCCccccccccCCCCC----CEEeccCccc
Q 036345 612 EKLKHLRFLKLSQVDLEE--LPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNL----RHLMISHNVY 674 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L----~~L~l~~~~~ 674 (954)
+++++|++|++++|.+.. +|..++++++|++|++++|......|..+..+++| ++|++++|..
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 999999999999999885 78999999999999999988333334567777777 7788877754
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8.6e-23 Score=222.16 Aligned_cols=233 Identities=22% Similarity=0.290 Sum_probs=169.7
Q ss_pred CCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCC
Q 036345 584 QLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVN 663 (954)
Q Consensus 584 ~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 663 (954)
....++.|+|+++ .+..+|..++++++|++|+|++|.+..+|..++++++|++|++++|. +..+|..+.++++
T Consensus 79 ~~~~l~~L~L~~n------~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 79 TQPGRVALELRSV------PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNR 151 (328)
T ss_dssp TSTTCCEEEEESS------CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTT
T ss_pred cccceeEEEccCC------CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcC
Confidence 4578999999999 78889999999999999999999999999999999999999999997 6799999999999
Q ss_pred CCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCce
Q 036345 664 LRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVC 743 (954)
Q Consensus 664 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 743 (954)
|++|++++|.....+|..+.... +. ..+.
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~-------------------------~~-------------------~~~~------- 180 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTD-------------------------AS-------------------GEHQ------- 180 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC--------------------------C-------------------CCEE-------
T ss_pred CCEEECCCCCCccccChhHhhcc-------------------------ch-------------------hhhc-------
Confidence 99999999877777765443210 00 0011
Q ss_pred EEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCC
Q 036345 744 LELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPS 823 (954)
Q Consensus 744 L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~ 823 (954)
.+++|++|++++|.+.. +|.++..+++|+.|+|++|.+....+.++.+++
T Consensus 181 -----------------------------~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 181 -----------------------------GLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp -----------------------------ESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred -----------------------------cCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 23455555555555553 666666666666666666666554445666666
Q ss_pred CceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccC
Q 036345 824 LEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKL 903 (954)
Q Consensus 824 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l 903 (954)
|+.|+|++|.....+|..+ ..+++|++|++.+|.....++ ..+..+++|+.|+|++|+.+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~----------------~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIF----------------GGRAPLKRLILKDCSNLLTLP----LDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CCEEECTTCTTCCBCCCCT----------------TCCCCCCEEECTTCTTCCBCC----TTGGGCTTCCEEECTTCTTC
T ss_pred CCEEECcCCcchhhhHHHh----------------cCCCCCCEEECCCCCchhhcc----hhhhcCCCCCEEeCCCCCch
Confidence 7777776666544444322 146667777777665544443 33557888999999999888
Q ss_pred cCCCCCCCCCCCcceEEEecC
Q 036345 904 KSLPDQLLRSTTLENLEIKKC 924 (954)
Q Consensus 904 ~~lp~~~~~l~~L~~L~l~~c 924 (954)
..+|..+..+++|+.+.+..+
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGG
T ss_pred hhccHHHhhccCceEEeCCHH
Confidence 899988888888888888754
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.9e-22 Score=245.89 Aligned_cols=347 Identities=15% Similarity=0.135 Sum_probs=242.4
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCc
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKH 616 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~ 616 (954)
+..+.+.+.++.+|. ..++|++|++++|. +....+..|.++++|++|+|++|. .+..+ |..++++++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~----i~~i~~~~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~~ 74 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNY----IRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPN 74 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCC----CCEECSSSCSSCCSCSEEEECTTC-----CCCEECTTTTSSCTT
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCc----CCccChhHCcccccCeEEeCCCCC-----CccccCHHHhcCCCC
Confidence 456677777888887 46899999999997 555567779999999999999983 23456 678999999
Q ss_pred CceeeccCcccccc-cccccCCCCccEEeccccCCCcccccc--ccCCCCCCEEeccCccccccCC-CCCCCCCCCCccC
Q 036345 617 LRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLPQG--IGKLVNLRHLMISHNVYLDYMP-KGIERLTCLRTLR 692 (954)
Q Consensus 617 L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~ 692 (954)
|++|+|++|.+..+ |..++++++|++|+|++|.....+|.. +.++++|++|++++|......| ..++++++|++|+
T Consensus 75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 99999999999976 889999999999999999854556665 8999999999999997644433 4689999999997
Q ss_pred ceEecCCccCccccccc--ccCCceeEEcCCCCCCCccccccccCccC------CCCceEEEEecCCcccccchhhh---
Q 036345 693 ELVVSRKGCNLGGLRHL--NHLRGSFRIRGLGNVTHVDEAKNSELDKK------KNLVCLELWFDREEEEATDENEA--- 761 (954)
Q Consensus 693 ~~~~~~~~~~l~~l~~L--~~L~~~l~i~~l~~~~~~~~~~~~~l~~~------~~L~~L~L~~~~~~~~~~~~~~~--- 761 (954)
+..+...+.....+..+ .+|+ .+.+....-.. .....+..+ ..|+.|+++.|............
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~-~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLS-FFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSC-CCEECCSBSCC----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCCCcCCeeCHHHcccccCCccc-eEECCCCcccc----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 76654443222333333 2333 33333221100 111111222 24888888877543221100000
Q ss_pred ---------------------hhHHHHhhcCCC--CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-C
Q 036345 762 ---------------------AKHEATSEALRP--NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-P 817 (954)
Q Consensus 762 ---------------------~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~ 817 (954)
.........+.. +++|+.|++++|.+....|..+..+++|+.|+|++|.+....+ .
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence 000000111222 3789999999998877557778899999999999998877655 4
Q ss_pred CCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecc
Q 036345 818 LGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKI 897 (954)
Q Consensus 818 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l 897 (954)
++.+++|+.|+|++|. +..+....+ ..+++|+.|++.++. +..+. +..+..+++|+.|++
T Consensus 310 ~~~l~~L~~L~Ls~N~-l~~~~~~~~---------------~~l~~L~~L~L~~N~-i~~~~---~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNL-LGELYSSNF---------------YGLPKVAYIDLQKNH-IAIIQ---DQTFKFLEKLQTLDL 369 (844)
T ss_dssp TTTCSSCCEEEEESCC-CSCCCSCSC---------------SSCTTCCEEECCSCC-CCCCC---SSCSCSCCCCCEEEE
T ss_pred hcCCCCCCEEECCCCC-CCccCHHHh---------------cCCCCCCEEECCCCC-CCccC---hhhhcCCCCCCEEEC
Confidence 8899999999999997 443322221 268899999999863 43332 234667999999999
Q ss_pred cccccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 898 ENCSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 898 ~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
++|. ++.++. +++|+.|++++|+.
T Consensus 370 s~N~-l~~i~~----~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 370 RDNA-LTTIHF----IPSIPDIFLSGNKL 393 (844)
T ss_dssp ETCC-SCCCSS----CCSCSEEEEESCCC
T ss_pred CCCC-CCcccC----CCCcchhccCCCCc
Confidence 9994 776664 67889999888863
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.6e-22 Score=229.29 Aligned_cols=307 Identities=20% Similarity=0.261 Sum_probs=214.3
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
..++++|+++++.+..++. +..+++|++|++++|. +....+ +..+++|++|++++| .+..+|. +++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~----l~~~~~--~~~l~~L~~L~L~~n------~l~~~~~-~~~ 132 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ----IADITP--LANLTNLTGLTLFNN------QITDIDP-LKN 132 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC----CCCCGG--GTTCTTCCEEECCSS------CCCCCGG-GTT
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCc----cccChh--hcCCCCCCEEECCCC------CCCCChH-HcC
Confidence 4567777777777666554 6667777777777665 333222 666777777777766 4555543 666
Q ss_pred cCcCceeeccCcccccccc--------------------cccCCCCccEEeccccCCCccccccccCCCCCCEEeccCcc
Q 036345 614 LKHLRFLKLSQVDLEELPE--------------------TCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNV 673 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~--------------------~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 673 (954)
+++|++|++++|.+..+|. .+.++++|++|++++|. +..++ .+..+++|++|++++|.
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ 210 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc
Confidence 6666666666666554432 26778899999999987 66665 48899999999999986
Q ss_pred ccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcc
Q 036345 674 YLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEE 753 (954)
Q Consensus 674 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 753 (954)
.. ..+. ++.+++|++|++..+.... +..+..+.+|+ .+.+.+..- ... ..+..+++|+.|++++|....
T Consensus 211 l~-~~~~-~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~-~L~l~~n~l-~~~-----~~~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 211 IS-DITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLT-DLDLANNQI-SNL-----APLSGLTKLTELKLGANQISN 279 (466)
T ss_dssp CC-CCGG-GGGCTTCCEEECCSSCCCC--CGGGGGCTTCS-EEECCSSCC-CCC-----GGGTTCTTCSEEECCSSCCCC
T ss_pred cc-cccc-ccccCCCCEEECCCCCccc--chhhhcCCCCC-EEECCCCcc-ccc-----hhhhcCCCCCEEECCCCccCc
Confidence 54 3333 6778888888765544331 23344444444 455544321 111 126678999999999987653
Q ss_pred cccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCC
Q 036345 754 EATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 754 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
. ..+..+++|++|++++|.+.. ++. +..+++|+.|+|++|.+....| ++.+++|+.|++++|.
T Consensus 280 ~--------------~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 280 I--------------SPLAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp C--------------GGGTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC
T ss_pred c--------------ccccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc
Confidence 2 125678999999999999887 554 7789999999999998776554 8899999999999997
Q ss_pred CceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCC
Q 036345 834 SVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQ 909 (954)
Q Consensus 834 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~ 909 (954)
+..++. ...+++|+.|++.++. +..+. | +..+++|+.|++++|+ +..+|..
T Consensus 343 -l~~~~~-----------------l~~l~~L~~L~l~~n~-l~~~~---~--~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 343 -VSDVSS-----------------LANLTNINWLSAGHNQ-ISDLT---P--LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp -CCCCGG-----------------GTTCTTCCEEECCSSC-CCBCG---G--GTTCTTCCEEECCCEE-EECCCBC
T ss_pred -cCCchh-----------------hccCCCCCEEeCCCCc-cCccc---h--hhcCCCCCEEeccCCc-ccCCchh
Confidence 444321 1268999999999875 34332 1 5689999999999995 6666653
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.7e-22 Score=231.81 Aligned_cols=331 Identities=17% Similarity=0.116 Sum_probs=234.1
Q ss_pred CCCceEEEEEEeccccC-C-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccc-cch
Q 036345 533 SKEKLYHLMLMINLFST-F-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIRE-IPK 609 (954)
Q Consensus 533 ~~~~lr~L~l~~~~~~~-~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~-lp~ 609 (954)
...+++.|+++.+.+.. + +..+..+++|++|++++|. +....|..|.++++|++|++++| .+.. +|.
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~ 121 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ----FLQLETGAFNGLANLEVLTLTQC------NLDGAVLS 121 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT----TCEECTTTTTTCTTCCEEECTTS------CCBTHHHH
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCc----cCccChhhccCcccCCEEeCCCC------CCCccccC
Confidence 36789999999998753 3 5568899999999999997 55556778999999999999999 5554 344
Q ss_pred h--hhccCcCceeeccCcccccc-ccc-ccCCCCccEEeccccCCCccccccccCC--CCCCEEeccCccccccCCCC--
Q 036345 610 E--IEKLKHLRFLKLSQVDLEEL-PET-CCELVNLQTLDIEACGSLKRLPQGIGKL--VNLRHLMISHNVYLDYMPKG-- 681 (954)
Q Consensus 610 ~--i~~L~~L~~L~L~~~~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l--~~L~~L~l~~~~~~~~~p~~-- 681 (954)
. ++++++|++|+|++|.+..+ |.. +.++++|++|++++|......|..+..+ .+|+.|++++|... .++..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~ 200 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWL 200 (455)
T ss_dssp SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCT
T ss_pred cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccc-ccchhhc
Confidence 4 88999999999999999977 555 8999999999999998555556667666 78999999998643 33321
Q ss_pred -------CCCCCCCCccCceEecCCccCcccccc---cccCCceeEEcCCCCCC------CccccccccCc--cCCCCce
Q 036345 682 -------IERLTCLRTLRELVVSRKGCNLGGLRH---LNHLRGSFRIRGLGNVT------HVDEAKNSELD--KKKNLVC 743 (954)
Q Consensus 682 -------i~~L~~L~~L~~~~~~~~~~~l~~l~~---L~~L~~~l~i~~l~~~~------~~~~~~~~~l~--~~~~L~~ 743 (954)
+..+++|++|++..+...+.....+.. ..+++ .+.+.+..... .........+. ..++|+.
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ-SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE-EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhcccccccee-eEeeccccccccccchhhhccCcccccccccccCceE
Confidence 335567777765444332111111101 12221 23332221100 00000011111 2478999
Q ss_pred EEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-CCCCCC
Q 036345 744 LELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-PLGKLP 822 (954)
Q Consensus 744 L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~ 822 (954)
|+++.|..... .+..+..+++|++|++++|.+....|.++..+++|+.|+|++|.+....+ .++.++
T Consensus 280 L~l~~n~l~~~------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 280 CDLSKSKIFAL------------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp EECCSSCCCEE------------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred EEecCcccccc------------chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 99999876543 34457788999999999999988557788899999999999998876654 378999
Q ss_pred CCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceeccccccc
Q 036345 823 SLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSK 902 (954)
Q Consensus 823 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~ 902 (954)
+|+.|+|++|. +..++...+ ..+++|++|++.++. ++.++. ..+..+++|+.|++++|+.
T Consensus 348 ~L~~L~Ls~N~-l~~~~~~~~---------------~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 348 KLEVLDLSYNH-IRALGDQSF---------------LGLPNLKELALDTNQ-LKSVPD---GIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TCCEEECCSSC-CCEECTTTT---------------TTCTTCCEEECCSSC-CSCCCT---TTTTTCTTCCEEECCSSCB
T ss_pred cCCEEECCCCc-ccccChhhc---------------cccccccEEECCCCc-cccCCH---hHhccCCcccEEEccCCCc
Confidence 99999999998 555543322 268999999999864 454432 3356799999999999974
Q ss_pred CcCCC
Q 036345 903 LKSLP 907 (954)
Q Consensus 903 l~~lp 907 (954)
-...|
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 44444
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6.9e-22 Score=239.01 Aligned_cols=269 Identities=20% Similarity=0.148 Sum_probs=187.0
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCc
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKH 616 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~ 616 (954)
+.++++++.+..+|..+. +++++|++++|. +....+..|.++++|++|+|++| .+..+ |..++++++
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQ----LRRLPAANFTRYSQLTSLDVGFN------TISKLEPELCQKLPM 74 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSC----CCCCCGGGGGGGTTCSEEECCSS------CCCCCCTTHHHHCTT
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCC----CCCcCHHHHhCCCcCcEEECCCC------ccCccCHHHHhcccC
Confidence 346777777777887664 799999999997 56666677999999999999999 66665 677999999
Q ss_pred CceeeccCcccccccc-cccCCCCccEEeccccCCCcccc-ccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCce
Q 036345 617 LRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLP-QGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLREL 694 (954)
Q Consensus 617 L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 694 (954)
|++|+|++|.+..+|. .++++++|++|++++|. +..+| ..+.++++|++|++++|......|..++++++|++|.+.
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 9999999999999987 59999999999999998 56665 569999999999999997766667778899999999766
Q ss_pred EecCCccCccccc--ccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCC
Q 036345 695 VVSRKGCNLGGLR--HLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALR 772 (954)
Q Consensus 695 ~~~~~~~~l~~l~--~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (954)
.+...+.....+. .+.+|+ .+.+... .+.......+..+.+|+.|.+..+..... ....+...+
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~-~L~L~~n----~l~~~~~~~~~~l~~L~~L~l~~~~l~~~--------~~~~~~~~l- 219 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLK-KLELSSN----QIKEFSPGCFHAIGRLFGLFLNNVQLGPS--------LTEKLCLEL- 219 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEES-EEECTTC----CCCCBCTTGGGGSSEECEEECTTCCCHHH--------HHHHHHHHH-
T ss_pred CCcccccCHHHhhcccccccc-EEECCCC----cccccChhhhhhhhhhhhhhccccccChh--------hHHHHHHHh-
Confidence 5443321111111 112222 3333321 11122223345566777777765543211 111111112
Q ss_pred CCCCCCEEEEeeecCCCCCCcchhcccC--ccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCC
Q 036345 773 PNPNIEVLKIFQYKGKTVFPSWIMSLCK--LKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~--L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~ 833 (954)
..++|++|++++|.+.+..|.++..++. |+.|+|++|.+....+ .++.+++|+.|++++|.
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 2367778888777776655666666544 8888888777665543 36777788888887776
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=3.3e-22 Score=224.23 Aligned_cols=280 Identities=16% Similarity=0.195 Sum_probs=217.9
Q ss_pred CCceEEEEEEeccccCCc-ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTFP-VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
.++++.|+++++.+..++ ..+..+++|++|++++|. +....+..|.++++|++|++++| .+..+|.. +
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n------~l~~l~~~~~ 137 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVFQNVPLLTVLVLERN------DLSSLPRGIF 137 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSS------CCCCCCTTTT
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCC----CCcCCHHHhcCCCCCCEEECCCC------ccCcCCHHHh
Confidence 578999999999988755 478899999999999997 66666777899999999999999 78888876 5
Q ss_pred hccCcCceeeccCccccccc-ccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCc
Q 036345 612 EKLKHLRFLKLSQVDLEELP-ETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRT 690 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 690 (954)
+++++|++|++++|.+..++ ..+..+++|++|++++|. +..++ +..+++|++|++++|.. ..+ ....+|+.
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l-~~~----~~~~~L~~ 209 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL-STL----AIPIAVEE 209 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCC-SEE----ECCSSCSE
T ss_pred cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccccc-ccc----CCCCcceE
Confidence 89999999999999999775 458999999999999998 66664 67899999999998843 222 22334555
Q ss_pred cCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhc
Q 036345 691 LRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEA 770 (954)
Q Consensus 691 L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 770 (954)
|+...+. +. .+ .....++|+.|++++|..... ..
T Consensus 210 L~l~~n~--------------l~-~~-----------------~~~~~~~L~~L~l~~n~l~~~--------------~~ 243 (390)
T 3o6n_A 210 LDASHNS--------------IN-VV-----------------RGPVNVELTILKLQHNNLTDT--------------AW 243 (390)
T ss_dssp EECCSSC--------------CC-EE-----------------ECCCCSSCCEEECCSSCCCCC--------------GG
T ss_pred EECCCCe--------------ee-ec-----------------cccccccccEEECCCCCCccc--------------HH
Confidence 5322110 00 00 001236899999998876521 34
Q ss_pred CCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCC
Q 036345 771 LRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNG 850 (954)
Q Consensus 771 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 850 (954)
+..+++|++|++++|.+....|..+..+++|+.|+|++|.+......++.+|+|+.|+|++|. +..++..+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-------- 314 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ-------- 314 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH--------
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccc--------
Confidence 567789999999999988755888889999999999999887665557789999999999997 65555432
Q ss_pred CCcCCcccccCcccceeeccccccccccccccccccccccccceecccccc
Q 036345 851 TSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCS 901 (954)
Q Consensus 851 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~ 901 (954)
..+++|+.|++.++. +..+. +..+++|+.|++++|+
T Consensus 315 --------~~l~~L~~L~L~~N~-i~~~~------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 315 --------PQFDRLENLYLDHNS-IVTLK------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp --------HHHTTCSEEECCSSC-CCCCC------CCTTCCCSEEECCSSC
T ss_pred --------cccCcCCEEECCCCc-cceeC------chhhccCCEEEcCCCC
Confidence 268999999999875 44443 4478999999999986
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=7.9e-22 Score=224.37 Aligned_cols=306 Identities=18% Similarity=0.139 Sum_probs=178.3
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
..++++++++++.+..+| .+..+++|++|++++|. +.. ++ +..+++|++|++++| .+..+| +++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~----l~~-~~--~~~l~~L~~L~Ls~N------~l~~~~--~~~ 104 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN----ITT-LD--LSQNTNLTYLACDSN------KLTNLD--VTP 104 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC----CSC-CC--CTTCTTCSEEECCSS------CCSCCC--CTT
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc----CCe-Ec--cccCCCCCEEECcCC------CCceee--cCC
Confidence 456788888888887765 67788888888888886 443 23 678888888888888 566664 788
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++.+++|++|++++|.....+ .++.+++|+.|++
T Consensus 105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 888888888888888876 7888888888888887 66664 778888888888888655555 3666777777754
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
..+...+.. +..+++|+.|++++|..... .+..
T Consensus 178 s~n~l~~l~--------------------------------l~~l~~L~~L~l~~N~l~~~---------------~l~~ 210 (457)
T 3bz5_A 178 SFNKITELD--------------------------------VSQNKLLNRLNCDTNNITKL---------------DLNQ 210 (457)
T ss_dssp CSSCCCCCC--------------------------------CTTCTTCCEEECCSSCCSCC---------------CCTT
T ss_pred CCCccceec--------------------------------cccCCCCCEEECcCCcCCee---------------cccc
Confidence 433222111 23344555555555543311 1344
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCc
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSA 853 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 853 (954)
+++|++|++++|.+.+ +| +..+++|+.|++++|.+.... ++.+++|+.|+++++. ++.+.-......
T Consensus 211 l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~-L~~L~l~~n~~~------- 277 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD-LLEIDLTHNTQL------- 277 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCC-CSCCCCTTCTTC-------
T ss_pred CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCC-CCEEECCCCccC-------
Confidence 5556666666665555 54 445556666666665544321 3334444444433332 222111000000
Q ss_pred CCcccccCcccceeecccccccccccccc----ccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCc
Q 036345 854 TSSVNVAFRKLKELAFWGLYEWEEWDFGE----EDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCP 925 (954)
Q Consensus 854 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~----~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 925 (954)
.......+++|+.|+++++..+..++... .-.+..+++|+.|++++| .++.+| +..+++|+.|++++|.
T Consensus 278 ~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred CcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 00001144556666665554433332210 001234455556666555 355443 4556666666666554
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.5e-22 Score=236.49 Aligned_cols=341 Identities=17% Similarity=0.174 Sum_probs=216.2
Q ss_pred EEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhhhccCcCc
Q 036345 540 LMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEIEKLKHLR 618 (954)
Q Consensus 540 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~ 618 (954)
.+...+.++.+|..+. ++|++|++++|. +....+..|.++++|++|++++| .+..++ ..++++++|+
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n------~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNK----ITYIGHGDLRACANLQVLILKSS------RINTIEGDAFYSLGSLE 77 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSC----CCEECSSTTSSCTTCCEEECTTS------CCCEECTTTTTTCTTCC
T ss_pred EECCCCccccccccCC--CCccEEECcCCc----cCccChhhhhcCCcccEEECCCC------CcCccChhhccccccCC
Confidence 3445566777787654 799999999997 55555677899999999999999 666664 6799999999
Q ss_pred eeeccCccccccccc-ccCCCCccEEeccccCCCc--cccccccCCCCCCEEeccCccccccCC-CCCCCCCCCCccCce
Q 036345 619 FLKLSQVDLEELPET-CCELVNLQTLDIEACGSLK--RLPQGIGKLVNLRHLMISHNVYLDYMP-KGIERLTCLRTLREL 694 (954)
Q Consensus 619 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~ 694 (954)
+|+|++|.+..+|.. ++.+++|++|++++|. +. ..|..+.++++|++|++++|.....+| ..+..+++|+.|++.
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 999999999988766 9999999999999998 55 457789999999999999997666776 578999999999887
Q ss_pred EecCCccCcccccccccCCceeEEcCC-------------CCCCCcccccc----------ccCccCCCCceEEEEecCC
Q 036345 695 VVSRKGCNLGGLRHLNHLRGSFRIRGL-------------GNVTHVDEAKN----------SELDKKKNLVCLELWFDRE 751 (954)
Q Consensus 695 ~~~~~~~~l~~l~~L~~L~~~l~i~~l-------------~~~~~~~~~~~----------~~l~~~~~L~~L~L~~~~~ 751 (954)
.+...+.....+..+.+++ .+.+... .++..++...+ .....+++|+.|.+..+..
T Consensus 157 ~n~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIH-HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp ETTCCEECTTTTTTCSEEE-EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred CCcccccChhhhhccccCc-eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 7665532223333333332 3333221 11111110000 0111234444444444432
Q ss_pred cccccchhhhhhHHHHhhcCC------------------------------C----------------------------
Q 036345 752 EEEATDENEAAKHEATSEALR------------------------------P---------------------------- 773 (954)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~l~------------------------------~---------------------------- 773 (954)
.+.. ...+...+. .
T Consensus 236 ~~~~--------~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 236 TDES--------FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EHHH--------HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred chhH--------HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 2110 011111111 1
Q ss_pred -CCCCCEEEEeeecCCCCCCcchh-cccCccEEEEeCcCCCCcCC----CCCCCCCCceEeecCCCCceEeCcccccCCC
Q 036345 774 -NPNIEVLKIFQYKGKTVFPSWIM-SLCKLKVLLLSFCIKCEIMP----PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGG 847 (954)
Q Consensus 774 -~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~c~~~~~l~----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 847 (954)
.++|++|++++|.+.. +|.++. .+++|+.|+|++|.+....| .++.+++|+.|++++|. +..++....
T Consensus 308 ~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---- 381 (549)
T 2z81_A 308 LLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGE---- 381 (549)
T ss_dssp HSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHH----
T ss_pred hcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchh----
Confidence 1345666666665554 666553 56777777777776654332 25667777777777765 433321000
Q ss_pred CCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCc
Q 036345 848 DNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCP 925 (954)
Q Consensus 848 ~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 925 (954)
....+++|++|+++++. ++.++ ..+..+++|+.|++++|. ++.+|..+ .++|+.|++++|.
T Consensus 382 ---------~~~~l~~L~~L~Ls~N~-l~~lp----~~~~~~~~L~~L~Ls~N~-l~~l~~~~--~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 382 ---------ILLTLKNLTSLDISRNT-FHPMP----DSCQWPEKMRFLNLSSTG-IRVVKTCI--PQTLEVLDVSNNN 442 (549)
T ss_dssp ---------HGGGCTTCCEEECTTCC-CCCCC----SCCCCCTTCCEEECTTSC-CSCCCTTS--CTTCSEEECCSSC
T ss_pred ---------hhhcCCCCCEEECCCCC-CccCC----hhhcccccccEEECCCCC-cccccchh--cCCceEEECCCCC
Confidence 01256777888777763 44332 335567778888888774 66676543 2578888887775
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=224.44 Aligned_cols=152 Identities=24% Similarity=0.254 Sum_probs=126.7
Q ss_pred CCceEEEEEEeccccCC-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
+.+++.|++++|.+..+ +..+..+++|++|++++|. +....|..|.++++|++|+|++| .+..+|.. +
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~ 100 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI----VSAVEPGAFNNLFNLRTLGLRSN------RLKLIPLGVF 100 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCSS------CCCSCCTTSS
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc----cCEeChhhhhCCccCCEEECCCC------cCCccCcccc
Confidence 57899999999999875 4678999999999999986 55556778999999999999999 77888764 7
Q ss_pred hccCcCceeeccCcccccc-cccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCC-CCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPK-GIERLTCLR 689 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~ 689 (954)
+++++|++|+|++|.+..+ |..+..+++|++|++++|......|..+..+++|++|++++|.. ..+|. .+..+++|+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLI 179 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCc
Confidence 8999999999999999865 66799999999999999984444466789999999999999864 44543 467788888
Q ss_pred ccCceEe
Q 036345 690 TLRELVV 696 (954)
Q Consensus 690 ~L~~~~~ 696 (954)
.|.+..+
T Consensus 180 ~L~l~~n 186 (477)
T 2id5_A 180 VLRLRHL 186 (477)
T ss_dssp EEEEESC
T ss_pred EEeCCCC
Confidence 8765443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=5.4e-22 Score=234.96 Aligned_cols=280 Identities=16% Similarity=0.190 Sum_probs=213.5
Q ss_pred CCceEEEEEEeccccCCc-ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTFP-VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
..+++.|++++|.+..++ ..+..+++|++|++++|. +....+..|.++++|++|+|++| .+..+|.. +
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n------~l~~l~~~~~ 143 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVFQNVPLLTVLVLERN------DLSSLPRGIF 143 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSS------CCCCCCTTTT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc----CCCCCHHHHcCCCCCCEEEeeCC------CCCCCCHHHh
Confidence 468999999999988755 478999999999999997 66667777899999999999999 77888876 5
Q ss_pred hccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCc
Q 036345 612 EKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRT 690 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 690 (954)
+++++|++|+|++|.+..+|+ .++.+++|++|++++|. +..+| +..+++|++|++++|.. .. +....+|+.
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l-~~----l~~~~~L~~ 215 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL-ST----LAIPIAVEE 215 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCC-SE----EECCTTCSE
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCcc-cc----ccCCchhhe
Confidence 899999999999999997755 69999999999999998 66665 67799999999998843 22 223345555
Q ss_pred cCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhc
Q 036345 691 LRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEA 770 (954)
Q Consensus 691 L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 770 (954)
|++..+.. . .+ . ....++|+.|+|++|.+.+ +..
T Consensus 216 L~ls~n~l-----~----------~~-----------~------~~~~~~L~~L~L~~n~l~~--------------~~~ 249 (597)
T 3oja_B 216 LDASHNSI-----N----------VV-----------R------GPVNVELTILKLQHNNLTD--------------TAW 249 (597)
T ss_dssp EECCSSCC-----C----------EE-----------E------CSCCSCCCEEECCSSCCCC--------------CGG
T ss_pred eeccCCcc-----c----------cc-----------c------cccCCCCCEEECCCCCCCC--------------Chh
Confidence 53322110 0 00 0 0112578888888887642 134
Q ss_pred CCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCC
Q 036345 771 LRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNG 850 (954)
Q Consensus 771 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 850 (954)
+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+....+.++.+|+|+.|+|++|. +..+|..+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~-------- 320 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ-------- 320 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH--------
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCccc--------
Confidence 566788999999999888756788888899999999998877655556778999999999887 55555432
Q ss_pred CCcCCcccccCcccceeeccccccccccccccccccccccccceecccccc
Q 036345 851 TSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCS 901 (954)
Q Consensus 851 ~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~ 901 (954)
..+++|+.|+++++. +..++ +..+++|+.|++++|+
T Consensus 321 --------~~l~~L~~L~L~~N~-l~~~~------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 321 --------PQFDRLENLYLDHNS-IVTLK------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp --------HHHTTCSEEECCSSC-CCCCC------CCTTCCCSEEECCSSC
T ss_pred --------ccCCCCCEEECCCCC-CCCcC------hhhcCCCCEEEeeCCC
Confidence 267889999998865 44332 3468899999998886
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=8.8e-22 Score=217.14 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=221.6
Q ss_pred cccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccc
Q 036345 553 SIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPE 632 (954)
Q Consensus 553 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 632 (954)
.+..+++|++|.+.++. +.. ++. +..+++|++|++++| .+..+|. +.++++|++|++++|.+..+|
T Consensus 39 ~~~~l~~L~~L~l~~~~----i~~-~~~-~~~~~~L~~L~l~~n------~i~~~~~-~~~l~~L~~L~L~~n~i~~~~- 104 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK----VAS-IQG-IEYLTNLEYLNLNGN------QITDISP-LSNLVKLTNLYIGTNKITDIS- 104 (347)
T ss_dssp CHHHHTTCSEEECCSSC----CCC-CTT-GGGCTTCCEEECCSS------CCCCCGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred cchhcccccEEEEeCCc----ccc-chh-hhhcCCccEEEccCC------ccccchh-hhcCCcCCEEEccCCcccCch-
Confidence 34578999999999986 333 343 788999999999999 7777776 999999999999999999986
Q ss_pred cccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccC
Q 036345 633 TCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHL 712 (954)
Q Consensus 633 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L 712 (954)
.+..+++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|+.|....+. +
T Consensus 105 ~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-----~--------- 167 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-----V--------- 167 (347)
T ss_dssp GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-----C---------
T ss_pred HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-----c---------
Confidence 69999999999999998 777776 88999999999999976555443 6777777776432211 0
Q ss_pred CceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCC
Q 036345 713 RGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFP 792 (954)
Q Consensus 713 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp 792 (954)
... ..+..+++|+.|++++|..... ..+..+++|+.|.+++|.+.. ++
T Consensus 168 ------------~~~-----~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~l~~L~~L~l~~n~l~~-~~ 215 (347)
T 4fmz_A 168 ------------KDV-----TPIANLTDLYSLSLNYNQIEDI--------------SPLASLTSLHYFTAYVNQITD-IT 215 (347)
T ss_dssp ------------CCC-----GGGGGCTTCSEEECTTSCCCCC--------------GGGGGCTTCCEEECCSSCCCC-CG
T ss_pred ------------CCc-----hhhccCCCCCEEEccCCccccc--------------ccccCCCccceeecccCCCCC-Cc
Confidence 000 1145678899999998876432 125667899999999998877 54
Q ss_pred cchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeecccc
Q 036345 793 SWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGL 872 (954)
Q Consensus 793 ~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 872 (954)
. +..+++|+.|+|++|.+....+ +..+++|+.|++++|. +..++. ...+++|++|++.++
T Consensus 216 ~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----------------~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 216 P-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINA-----------------VKDLTKLKMLNVGSN 275 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-----------------GTTCTTCCEEECCSS
T ss_pred h-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChh-----------------HhcCCCcCEEEccCC
Confidence 4 7789999999999998765444 8999999999999997 444321 126899999999987
Q ss_pred ccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCcc
Q 036345 873 YEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 873 ~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
. +..+ ..+..+++|+.|++++|......|..+..+++|+.|++++|+.
T Consensus 276 ~-l~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 276 Q-ISDI-----SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp C-CCCC-----GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred c-cCCC-----hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 4 5554 2355799999999999964334455567789999999999984
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=227.90 Aligned_cols=359 Identities=16% Similarity=0.154 Sum_probs=223.3
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCc
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKH 616 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~ 616 (954)
++++++++.++.+|..+. ++|+.|++++|. +....+..|.++++|++|+|++| .+..+ |..++++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNY----ISELWTSDILSLSKLRILIISHN------RIQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSC----CCCCCHHHHTTCTTCCEEECCSS------CCCEEEGGGGTTCTT
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCc----ccccChhhccccccccEEecCCC------ccCCcChHHhhcccC
Confidence 578899999998888765 899999999997 66666778999999999999999 67766 778999999
Q ss_pred CceeeccCcccccccccccCCCCccEEeccccCCCc-cccccccCCCCCCEEeccCccccccCCCCCCCCCCC--CccCc
Q 036345 617 LRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLK-RLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCL--RTLRE 693 (954)
Q Consensus 617 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~ 693 (954)
|++|+|++|.++.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.... ..+..+++| +.|.+
T Consensus 71 L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 71 LEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred CCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence 99999999999999988 89999999999998433 467899999999999999986533 346667777 88877
Q ss_pred eEecC--CccCcccccccccCCceeEE--c--------------CCCCCCCcccc-------------ccccCccCCCCc
Q 036345 694 LVVSR--KGCNLGGLRHLNHLRGSFRI--R--------------GLGNVTHVDEA-------------KNSELDKKKNLV 742 (954)
Q Consensus 694 ~~~~~--~~~~l~~l~~L~~L~~~l~i--~--------------~l~~~~~~~~~-------------~~~~l~~~~~L~ 742 (954)
..+.. .+.....+..+.. ..+.+ . .+..+..++.. ....+..+++|+
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNT--ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCE--EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred eccccccccccccccccccc--ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence 66554 2222233333221 00110 0 00000000000 001233344444
Q ss_pred eEEEEecCCcccccchhh---------------hhhHHHHhhcC-----CCCCCCCEEEEeeecCCCCCC-cc-------
Q 036345 743 CLELWFDREEEEATDENE---------------AAKHEATSEAL-----RPNPNIEVLKIFQYKGKTVFP-SW------- 794 (954)
Q Consensus 743 ~L~L~~~~~~~~~~~~~~---------------~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~lp-~~------- 794 (954)
.|+++.+........... ......++..+ ..+++|+.+++.+|.+ . +| .+
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~-~p~~~~~~~~~~ 301 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-G-FPQSYIYEIFSN 301 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-C-SCTHHHHHHHHT
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-e-cchhhhhccccc
Confidence 444444432211000000 00000011111 2333333333333333 1 22 11
Q ss_pred ------------------hhcccCccEEEEeCcCCCCcC-CCCCCCCCCceEeecCCCCceEeC---cccccC-------
Q 036345 795 ------------------IMSLCKLKVLLLSFCIKCEIM-PPLGKLPSLEVLSIWNMNSVKTVG---DEFLGI------- 845 (954)
Q Consensus 795 ------------------~~~l~~L~~L~L~~c~~~~~l-~~l~~l~~L~~L~L~~~~~l~~~~---~~~~~~------- 845 (954)
...+++|++|+|++|.+...+ ..++.+++|+.|++++|. +..++ ..+...
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEE
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEE
Confidence 156789999999999988754 458999999999999998 44322 111111
Q ss_pred -CCCCCCC-cCCcccccCcccceeeccccccccccccccccccccc-cccceecccccccCcCCCCCCCCCCCcceEEEe
Q 036345 846 -GGDNGTS-ATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVM-PQLNSLKIENCSKLKSLPDQLLRSTTLENLEIK 922 (954)
Q Consensus 846 -~~~~~~~-~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 922 (954)
....... ........+++|+.|+++++.--... +. .+ ++|+.|++++| .++.+|..+..+++|++|+++
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~---~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI----FR---CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG----GG---SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECC
T ss_pred CCCCcCCcccccchhccCccCCEEECcCCCCCcch----hh---hhcccCCEEECCCC-cccccchhhhcCCCCCEEECC
Confidence 0000000 11111234567777777765411111 11 22 68999999998 588999888889999999999
Q ss_pred cCcc
Q 036345 923 KCPI 926 (954)
Q Consensus 923 ~c~~ 926 (954)
+|..
T Consensus 453 ~N~l 456 (520)
T 2z7x_B 453 SNQL 456 (520)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 9963
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=4.3e-21 Score=226.03 Aligned_cols=359 Identities=16% Similarity=0.154 Sum_probs=221.3
Q ss_pred eEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccC
Q 036345 537 LYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLK 615 (954)
Q Consensus 537 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~ 615 (954)
.++++++++.++.+|..+. ++|++|++++|. +....+..|.++++|++|+|++| .+..+ |+.+++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS----ISELRMPDISFLSELRVLRLSHN------RIRSLDFHVFLFNQ 100 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC----CCCCCGGGTTTCTTCCEEECCSC------CCCEECTTTTTTCT
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCC----ccccChhhhccCCCccEEECCCC------CCCcCCHHHhCCCC
Confidence 4789999999998887664 899999999997 66666778999999999999999 77777 67799999
Q ss_pred cCceeeccCcccccccccccCCCCccEEeccccCCCccc--cccccCCCCCCEEeccCccccccCCCCCCCCCCC--Ccc
Q 036345 616 HLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRL--PQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCL--RTL 691 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L 691 (954)
+|++|+|++|.++.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| +.|
T Consensus 101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 174 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCI 174 (562)
T ss_dssp TCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEE
T ss_pred CCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEE
Confidence 999999999999999988 89999999999998 6654 4789999999999999986433 345566666 777
Q ss_pred CceEecC--CccCcccccccccCCceeEE--cC--------------CCCCCCccccc-----------cccCccCC---
Q 036345 692 RELVVSR--KGCNLGGLRHLNHLRGSFRI--RG--------------LGNVTHVDEAK-----------NSELDKKK--- 739 (954)
Q Consensus 692 ~~~~~~~--~~~~l~~l~~L~~L~~~l~i--~~--------------l~~~~~~~~~~-----------~~~l~~~~--- 739 (954)
++..+.. .+.....+..+.. ..+.+ .. +..+..++... ...+...+
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNT--TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCE--EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EeecccccccccCcccccccCc--ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 6655544 2222223332220 00111 00 00000000000 00011122
Q ss_pred ------------------------CCceEEEEecCCcccccchhh-----------------h--hhHHHHhhcCCCCCC
Q 036345 740 ------------------------NLVCLELWFDREEEEATDENE-----------------A--AKHEATSEALRPNPN 776 (954)
Q Consensus 740 ------------------------~L~~L~L~~~~~~~~~~~~~~-----------------~--~~~~~~~~~l~~~~~ 776 (954)
+|+.|++++|...+..+.... . .........+.+..+
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 333333333322211000000 0 000000000001123
Q ss_pred CCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCc---ccccC-------
Q 036345 777 IEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGD---EFLGI------- 845 (954)
Q Consensus 777 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~---~~~~~------- 845 (954)
|++|++++|.+.. .+ ....+++|+.|+|++|.+....| .++.+++|+.|++++|. +..++. .+...
T Consensus 333 L~~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 333 IKMLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE
T ss_pred ceEEEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE
Confidence 4444444443322 11 01567899999999999887544 58999999999999997 554432 11111
Q ss_pred -CCCCCCC-cCCcccccCcccceeeccccccccccccccccccccc-cccceecccccccCcCCCCCCCCCCCcceEEEe
Q 036345 846 -GGDNGTS-ATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVM-PQLNSLKIENCSKLKSLPDQLLRSTTLENLEIK 922 (954)
Q Consensus 846 -~~~~~~~-~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 922 (954)
....... ........+++|+.|+++++. +.. .. ...+ ++|+.|++++| .++.+|..+..+++|+.|+++
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~---~~---~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTG---SV---FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVA 481 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCG---GG---GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCC-CCc---ch---hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECC
Confidence 0000000 111112345677777777654 221 11 1133 69999999999 688999988899999999999
Q ss_pred cCcc
Q 036345 923 KCPI 926 (954)
Q Consensus 923 ~c~~ 926 (954)
+|..
T Consensus 482 ~N~l 485 (562)
T 3a79_B 482 SNQL 485 (562)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9973
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=6.1e-22 Score=214.18 Aligned_cols=248 Identities=21% Similarity=0.228 Sum_probs=198.1
Q ss_pred CceEEEEEEecccc---CCcccccccCcceEEEeec-cCCccccCCCchhhhcCCCceeEEEecCCCcccccccc-ccch
Q 036345 535 EKLYHLMLMINLFS---TFPVSIRYAKKLRSLFLVA-NGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIR-EIPK 609 (954)
Q Consensus 535 ~~lr~L~l~~~~~~---~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~-~lp~ 609 (954)
.++++++++++.+. .+|..+..+++|++|++++ +. +...+|..|.++++|++|++++| .+. .+|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~----l~~~~p~~l~~l~~L~~L~Ls~n------~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN----LVGPIPPAIAKLTQLHYLYITHT------NVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT----EESCCCGGGGGCTTCSEEEEEEE------CCEEECCG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc----ccccCChhHhcCCCCCEEECcCC------eeCCcCCH
Confidence 57999999999887 4788899999999999995 54 45557778899999999999999 665 6788
Q ss_pred hhhccCcCceeeccCcccc-cccccccCCCCccEEeccccCCCccccccccCCC-CCCEEeccCccccccCCCCCCCCCC
Q 036345 610 EIEKLKHLRFLKLSQVDLE-ELPETCCELVNLQTLDIEACGSLKRLPQGIGKLV-NLRHLMISHNVYLDYMPKGIERLTC 687 (954)
Q Consensus 610 ~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~L~~ 687 (954)
.++++++|++|+|++|.+. .+|..+..+++|++|++++|.....+|..+..++ +|++|++++|.....+|..+..++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 8999999999999999998 7899999999999999999984448999999998 999999999977667787777765
Q ss_pred CCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHH
Q 036345 688 LRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEAT 767 (954)
Q Consensus 688 L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 767 (954)
|+.|++..+. +.......+..+++|+.|++++|.....
T Consensus 199 L~~L~Ls~N~-----------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------- 236 (313)
T 1ogq_A 199 LAFVDLSRNM-----------------------------LEGDASVLFGSDKNTQKIHLAKNSLAFD------------- 236 (313)
T ss_dssp CSEEECCSSE-----------------------------EEECCGGGCCTTSCCSEEECCSSEECCB-------------
T ss_pred ccEEECcCCc-----------------------------ccCcCCHHHhcCCCCCEEECCCCceeee-------------
Confidence 6666432110 0111223455678888898888865432
Q ss_pred hhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCc
Q 036345 768 SEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSV 835 (954)
Q Consensus 768 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l 835 (954)
+..+..+++|++|++++|.+.+.+|.++..+++|+.|+|++|.+...+|..+.+++|+.|++.+|+.+
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 22356678899999999988755888888889999999999988877888888899999999888744
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=8.6e-21 Score=207.53 Aligned_cols=246 Identities=21% Similarity=0.211 Sum_probs=175.6
Q ss_pred ceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhcc
Q 036345 536 KLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKL 614 (954)
Q Consensus 536 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L 614 (954)
.++.++++++.+..+|..+ .++|++|++++|. +....+..|.++++|++|++++| .+..+ |..++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND----ISELRKDDFKGLQHLYALVLVNN------KISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSS------CCCEECGGGSTTC
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCc----CCccCHhHhhCCCCCcEEECCCC------ccCccCHhHhhCc
Confidence 4667788888887777665 3688999998886 44545667888999999999988 66666 6778889
Q ss_pred CcCceeeccCcccccccccccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCcccc--ccCCCCCCCCCCCCcc
Q 036345 615 KHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVYL--DYMPKGIERLTCLRTL 691 (954)
Q Consensus 615 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~--~~~p~~i~~L~~L~~L 691 (954)
++|++|+|++|.+..+|..+. ++|++|++++|. +..+|.. +..+++|++|++++|... ...|..+..+ +|+.|
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 999999999999988888776 789999999887 6666654 788999999999888653 2345555555 66666
Q ss_pred CceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcC
Q 036345 692 RELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEAL 771 (954)
Q Consensus 692 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l 771 (954)
++..+.. .. +. .. ..++|+.|++++|..... ....+
T Consensus 178 ~l~~n~l-----~~------l~-------------------~~--~~~~L~~L~l~~n~i~~~------------~~~~l 213 (332)
T 2ft3_A 178 RISEAKL-----TG------IP-------------------KD--LPETLNELHLDHNKIQAI------------ELEDL 213 (332)
T ss_dssp BCCSSBC-----SS------CC-------------------SS--SCSSCSCCBCCSSCCCCC------------CTTSS
T ss_pred ECcCCCC-----Cc------cC-------------------cc--ccCCCCEEECCCCcCCcc------------CHHHh
Confidence 4322110 00 00 00 115777788877765432 12456
Q ss_pred CCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCccc
Q 036345 772 RPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEF 842 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 842 (954)
..+++|++|++++|.+....|.++..+++|+.|+|++|.+....+.++.+++|+.|++++|. +..++...
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~ 283 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVND 283 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTS
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhH
Confidence 67788888888888887744457778888888888888777544557888888888888887 66665443
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.2e-20 Score=206.14 Aligned_cols=248 Identities=19% Similarity=0.171 Sum_probs=169.5
Q ss_pred ceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhcc
Q 036345 536 KLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKL 614 (954)
Q Consensus 536 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L 614 (954)
+++.++++++.+..+|..+. ++++.|++++|. +....+..|.++++|++|++++| .+..+ |..++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK----ITEIKDGDFKNLKNLHTLILINN------KISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSS------CCCCBCTTTTTTC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc----CCEeChhhhccCCCCCEEECCCC------cCCeeCHHHhcCC
Confidence 45667777777777776543 678888888886 55545556788888888888888 66666 6778888
Q ss_pred CcCceeeccCcccccccccccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccc--cCCCCCCCCCCCCcc
Q 036345 615 KHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLD--YMPKGIERLTCLRTL 691 (954)
Q Consensus 615 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L 691 (954)
++|++|+|++|.++.+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|.... ..|..+..+++|+.|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 888888888888888887765 788888888887 555543 47788888888888875422 344555666666665
Q ss_pred CceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcC
Q 036345 692 RELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEAL 771 (954)
Q Consensus 692 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l 771 (954)
.+..+. +. .+.. . ..++|+.|++++|..... .+..+
T Consensus 177 ~l~~n~-----l~---------------------~l~~----~--~~~~L~~L~l~~n~l~~~------------~~~~~ 212 (330)
T 1xku_A 177 RIADTN-----IT---------------------TIPQ----G--LPPSLTELHLDGNKITKV------------DAASL 212 (330)
T ss_dssp ECCSSC-----CC---------------------SCCS----S--CCTTCSEEECTTSCCCEE------------CTGGG
T ss_pred ECCCCc-----cc---------------------cCCc----c--ccccCCEEECCCCcCCcc------------CHHHh
Confidence 432111 00 0000 0 115777888877765432 12345
Q ss_pred CCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccc
Q 036345 772 RPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFL 843 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 843 (954)
..+++|++|++++|.+....|.++..+++|+.|+|++|.+......+..+++|+.|++++|. +..++...+
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f 283 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF 283 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSS
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhc
Confidence 66778888888888777633446777888888888888776555557788888888888877 666654433
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=1.1e-20 Score=214.87 Aligned_cols=287 Identities=17% Similarity=0.149 Sum_probs=209.0
Q ss_pred cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccc
Q 036345 551 PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEEL 630 (954)
Q Consensus 551 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l 630 (954)
+..+..+++|++|+++++. +.+ +| .+..+++|++|++++| .+..+| ++.+++|++|++++|.++.+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~----l~~-~~-~l~~l~~L~~L~Ls~n------~l~~~~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSS----ITD-MT-GIEKLTGLTKLICTSN------NITTLD--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp EEEHHHHTTCCEEECCSSC----CCC-CT-TGGGCTTCSEEECCSS------CCSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred ccChhHcCCCCEEEccCCC----ccc-Ch-hhcccCCCCEEEccCC------cCCeEc--cccCCCCCEEECcCCCCcee
Confidence 4467789999999999986 444 34 4788999999999999 666775 88999999999999999988
Q ss_pred cccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccc
Q 036345 631 PETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLN 710 (954)
Q Consensus 631 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~ 710 (954)
| ++.+++|++|++++|. +..+| ++.+++|++|++++|.. ..+| ++.+++|+.|++..+
T Consensus 101 ~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n-------------- 158 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLN-------------- 158 (457)
T ss_dssp C--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTC--------------
T ss_pred e--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCC--------------
Confidence 6 8899999999999997 77776 88999999999999854 4443 666677666643211
Q ss_pred cCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCC
Q 036345 711 HLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTV 790 (954)
Q Consensus 711 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 790 (954)
..+..+ .+..+++|+.|++++|..... + +..+++|++|++++|.+..
T Consensus 159 -----------~~~~~~------~~~~l~~L~~L~ls~n~l~~l--------------~-l~~l~~L~~L~l~~N~l~~- 205 (457)
T 3bz5_A 159 -----------KKITKL------DVTPQTQLTTLDCSFNKITEL--------------D-VSQNKLLNRLNCDTNNITK- 205 (457)
T ss_dssp -----------SCCCCC------CCTTCTTCCEEECCSSCCCCC--------------C-CTTCTTCCEEECCSSCCSC-
T ss_pred -----------Cccccc------ccccCCcCCEEECCCCcccee--------------c-cccCCCCCEEECcCCcCCe-
Confidence 111111 244578999999999876531 1 6678999999999999887
Q ss_pred CCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeecc
Q 036345 791 FPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFW 870 (954)
Q Consensus 791 lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~ 870 (954)
++ +..+++|+.|+|++|.+.. +| ++.+++|+.|++++|. +..++...+..- ........+|+.|++.
T Consensus 206 ~~--l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~~~~l~~L--------~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 206 LD--LNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LTELDVSTLSKL--------TTLHCIQTDLLEIDLT 272 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCCCTTCTTC--------CEEECTTCCCSCCCCT
T ss_pred ec--cccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc-CCCcCHHHCCCC--------CEEeccCCCCCEEECC
Confidence 53 7789999999999998877 55 8899999999999997 554442111000 0000122355566666
Q ss_pred ccccccccccccccccccccccceecccccccCcCCCCC--------CCCCCCcceEEEecCc
Q 036345 871 GLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQ--------LLRSTTLENLEIKKCP 925 (954)
Q Consensus 871 ~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~--------~~~l~~L~~L~l~~c~ 925 (954)
++..+..++. ..+++|+.|++++|..+..+|.. +..+++|+.|++++|.
T Consensus 273 ~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 273 HNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp TCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred CCccCCcccc------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 6654444432 36899999999999877666642 3445677777777665
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=3.3e-21 Score=208.44 Aligned_cols=253 Identities=17% Similarity=0.179 Sum_probs=169.5
Q ss_pred CcceEEEeeccCCccccCC--CchhhhcCCCceeEEEecC-CCcccccccc-ccchhhhccCcCceeeccCcccc-cccc
Q 036345 558 KKLRSLFLVANGSFKVLSP--VLPGLFDQLTFLRTLKITG-ESAGVEKSIR-EIPKEIEKLKHLRFLKLSQVDLE-ELPE 632 (954)
Q Consensus 558 ~~Lr~L~l~~~~~~~~~~~--~~~~~~~~l~~Lr~L~L~~-~~~~~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~ 632 (954)
.+++.|+++++. +.+ .+|..+.++++|++|++++ + .+. .+|..++++++|++|+|++|.+. .+|.
T Consensus 50 ~~l~~L~L~~~~----l~~~~~~~~~l~~l~~L~~L~L~~~n------~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN----LPKPYPIPSSLANLPYLNFLYIGGIN------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC----CSSCEECCGGGGGCTTCSEEEEEEET------TEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC----ccCCcccChhHhCCCCCCeeeCCCCC------cccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 579999999986 554 5677889999999999995 6 333 67888999999999999999998 7888
Q ss_pred cccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCC-CCCccCceEecCCccCccccccccc
Q 036345 633 TCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLT-CLRTLRELVVSRKGCNLGGLRHLNH 711 (954)
Q Consensus 633 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~~~~~~~~~~l~~l~~L~~ 711 (954)
.+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+. +|+.|+
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~------------------- 180 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT------------------- 180 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE-------------------
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE-------------------
Confidence 999999999999999984447888899999999999999876556776666555 555443
Q ss_pred CCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCC
Q 036345 712 LRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVF 791 (954)
Q Consensus 712 L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l 791 (954)
+++|..... .+..+..++ |++|++++|.+....
T Consensus 181 ----------------------------------L~~N~l~~~------------~~~~~~~l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 181 ----------------------------------ISRNRLTGK------------IPPTFANLN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp ----------------------------------CCSSEEEEE------------CCGGGGGCC-CSEEECCSSEEEECC
T ss_pred ----------------------------------CcCCeeecc------------CChHHhCCc-ccEEECcCCcccCcC
Confidence 222221110 011122222 666666666655445
Q ss_pred CcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccc
Q 036345 792 PSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWG 871 (954)
Q Consensus 792 p~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 871 (954)
|..+..+++|+.|+|++|.+...++.+..+++|++|+|++|.....+|..+ ..+++|++|++++
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l----------------~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL----------------TQLKFLHSLNVSF 277 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG----------------GGCTTCCEEECCS
T ss_pred CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH----------------hcCcCCCEEECcC
Confidence 666667777777777777766666666777777777777776322333222 1455666666665
Q ss_pred cccccccccccccccccccccceecccccccCcCCC
Q 036345 872 LYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLP 907 (954)
Q Consensus 872 ~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp 907 (954)
+.--..+ |.. ..+++|+.|++.+|+.+...|
T Consensus 278 N~l~~~i----p~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 278 NNLCGEI----PQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SEEEEEC----CCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcccccC----CCC-ccccccChHHhcCCCCccCCC
Confidence 4311111 111 356666666666666555444
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.1e-20 Score=226.87 Aligned_cols=360 Identities=17% Similarity=0.160 Sum_probs=228.5
Q ss_pred CCceEEEEEEeccccCCc-ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hh
Q 036345 534 KEKLYHLMLMINLFSTFP-VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i 611 (954)
+..+++|+++.|.++.++ ..|..+++|++|++++|. +....+..|.++++|++|+|++| .+..+|. .+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~----i~~i~~~~f~~L~~L~~L~Ls~N------~l~~l~~~~f 120 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGN------PIQSLALGAF 120 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCCEEECTTC------CCCEECGGGG
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc----CCCcChhHhcCCCCCCEEEccCC------cCCCCCHHHh
Confidence 678999999999999876 468999999999999997 56656677999999999999999 7888875 58
Q ss_pred hccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCc--cccccccCCCCCCEEeccCccccccCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLK--RLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCL 688 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 688 (954)
++|.+|++|+|++|.++.+|. .+++|++|++|++++|. +. .+|..+..+++|++|++++|......|..+..+.++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 999999999999999999876 48999999999999997 44 467788999999999999885433223322222221
Q ss_pred CccCc---------------------------eEecCC----------------------------------ccCcc---
Q 036345 689 RTLRE---------------------------LVVSRK----------------------------------GCNLG--- 704 (954)
Q Consensus 689 ~~L~~---------------------------~~~~~~----------------------------------~~~l~--- 704 (954)
+.+.. ...... ...+.
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 11000 000000 00000
Q ss_pred ------------------------cccccc-------------------cCCceeEEcCC----------CCCCCcccc-
Q 036345 705 ------------------------GLRHLN-------------------HLRGSFRIRGL----------GNVTHVDEA- 730 (954)
Q Consensus 705 ------------------------~l~~L~-------------------~L~~~l~i~~l----------~~~~~~~~~- 730 (954)
.+.++. .++ .+.+.+. ..+......
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ-HLELVNCKFGQFPTLKLKSLKRLTFTS 358 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCS-EEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhh-hhhcccccccCcCcccchhhhhccccc
Confidence 000000 000 1111110 000000000
Q ss_pred ----ccccCccCCCCceEEEEecCCcccccchhh--------------------------------------hhhHHHHh
Q 036345 731 ----KNSELDKKKNLVCLELWFDREEEEATDENE--------------------------------------AAKHEATS 768 (954)
Q Consensus 731 ----~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~--------------------------------------~~~~~~~~ 768 (954)
.......+++|+.|+++.|........... ........
T Consensus 359 n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 359 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred ccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccc
Confidence 001112356677776666544211000000 00000001
Q ss_pred hcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCc-CC-CCCCCCCCceEeecCCCCceEeCcccccCC
Q 036345 769 EALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEI-MP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIG 846 (954)
Q Consensus 769 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~-l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 846 (954)
..+..+++++.+++++|.+....|..+..+++|+.|+|++|..... .| .++.+++|+.|+|++|. +..++...+.
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-- 515 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-- 515 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT--
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHc--
Confidence 1233455666666666665553455566778888888888875443 33 47888999999999987 6666544332
Q ss_pred CCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCC-CCCCCCC-CCcceEEEecC
Q 036345 847 GDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSL-PDQLLRS-TTLENLEIKKC 924 (954)
Q Consensus 847 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~l-p~~~~~l-~~L~~L~l~~c 924 (954)
.+++|++|+++++. +..+. +..+..+++|+.|++++|. +..+ |..+.++ ++|+.|++++|
T Consensus 516 -------------~l~~L~~L~Ls~N~-l~~l~---~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 516 -------------SLSSLQVLNMSHNN-FFSLD---TFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp -------------TCTTCCEEECTTSC-CCBCC---CGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTC
T ss_pred -------------CCCCCCEEECCCCc-CCCCC---hhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCC
Confidence 68899999999863 44433 2345678999999999995 5555 5556666 68999999998
Q ss_pred cc
Q 036345 925 PI 926 (954)
Q Consensus 925 ~~ 926 (954)
|.
T Consensus 578 p~ 579 (635)
T 4g8a_A 578 DF 579 (635)
T ss_dssp CB
T ss_pred CC
Confidence 85
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.5e-20 Score=201.51 Aligned_cols=105 Identities=28% Similarity=0.436 Sum_probs=81.9
Q ss_pred cCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccC
Q 036345 557 AKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCE 636 (954)
Q Consensus 557 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~ 636 (954)
.++++.|+++++. +. .+|..+..+++|++|+|++| .+..+|..++++++|++|+|++|.+..+|..+++
T Consensus 80 ~~~l~~L~L~~n~----l~-~lp~~l~~l~~L~~L~L~~n------~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVP----LP-QFPDQAFRLSHLQHMTIDAA------GLMELPDTMQQFAGLETLTLARNPLRALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSC----CS-SCCSCGGGGTTCSEEEEESS------CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred ccceeEEEccCCC----ch-hcChhhhhCCCCCEEECCCC------CccchhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence 4667777777775 33 24555667888888888888 6677888888888999999998888888888888
Q ss_pred CCCccEEeccccCCCccccccccC---------CCCCCEEeccCc
Q 036345 637 LVNLQTLDIEACGSLKRLPQGIGK---------LVNLRHLMISHN 672 (954)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~~i~~---------l~~L~~L~l~~~ 672 (954)
+++|++|++++|..+..+|..+.. +++|++|++++|
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC
Confidence 899999999888878888877654 666666666665
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=4.7e-20 Score=201.61 Aligned_cols=290 Identities=17% Similarity=0.128 Sum_probs=180.0
Q ss_pred CcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcCceeeccCcccccc-ccccc
Q 036345 558 KKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHLRFLKLSQVDLEEL-PETCC 635 (954)
Q Consensus 558 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~ 635 (954)
.+++.++++++. +.. +|..+ .+.|++|++++| .+..+ |..++++++|++|+|++|.+..+ |..++
T Consensus 33 c~l~~l~~~~~~----l~~-ip~~~--~~~l~~L~l~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 99 (332)
T 2ft3_A 33 CHLRVVQCSDLG----LKA-VPKEI--SPDTTLLDLQNN------DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS 99 (332)
T ss_dssp EETTEEECCSSC----CSS-CCSCC--CTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST
T ss_pred ccCCEEECCCCC----ccc-cCCCC--CCCCeEEECCCC------cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh
Confidence 368889888875 333 34323 468999999998 66666 45789999999999999999876 77889
Q ss_pred CCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCC-CCCCCCCCCccCceEecCCccCcccccccccCCc
Q 036345 636 ELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPK-GIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRG 714 (954)
Q Consensus 636 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~ 714 (954)
.+++|++|++++|. +..+|..+. ++|++|++++|.. ..+|. .+..+++|++|++..+... ..
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~-----~~-------- 162 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLE-----NS-------- 162 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCB-----GG--------
T ss_pred CcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccc-----cC--------
Confidence 99999999999987 778887766 7899999998854 44544 3677777777644322110 00
Q ss_pred eeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcc
Q 036345 715 SFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSW 794 (954)
Q Consensus 715 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~ 794 (954)
......+..+ +|+.|++++|..... +..+ .++|++|++++|.+....|..
T Consensus 163 --------------~~~~~~~~~l-~L~~L~l~~n~l~~l-------------~~~~--~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 163 --------------GFEPGAFDGL-KLNYLRISEAKLTGI-------------PKDL--PETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp --------------GSCTTSSCSC-CCSCCBCCSSBCSSC-------------CSSS--CSSCSCCBCCSSCCCCCCTTS
T ss_pred --------------CCCcccccCC-ccCEEECcCCCCCcc-------------Cccc--cCCCCEEECCCCcCCccCHHH
Confidence 0001112222 566666666654321 1111 256777777777776633456
Q ss_pred hhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc
Q 036345 795 IMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 795 ~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
+..+++|+.|+|++|.+....+ .++.+++|+.|++++|. +..+|..+ ..+++|+.|++.++.
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l----------------~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL----------------PDLKLLQVVYLHTNN 275 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTG----------------GGCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhh----------------hcCccCCEEECCCCC
Confidence 6677777777777776665544 36677777777777776 44554432 156677777777643
Q ss_pred cccccccccccc---cccccccceecccccccC--cCCCCCCCCCCCcceEEEecCc
Q 036345 874 EWEEWDFGEEDN---ITVMPQLNSLKIENCSKL--KSLPDQLLRSTTLENLEIKKCP 925 (954)
Q Consensus 874 ~l~~~~~~~~~~---~~~~p~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 925 (954)
+..+....-.. ...+++|+.|++.+|+.. ...|..+..+++|+.|++++|.
T Consensus 276 -l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 -ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 34333211000 012456777777777633 2334445566677777776664
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1e-19 Score=198.86 Aligned_cols=117 Identities=23% Similarity=0.304 Sum_probs=78.2
Q ss_pred cceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhhccCcCceeeccCcccccc-cccccC
Q 036345 559 KLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLEEL-PETCCE 636 (954)
Q Consensus 559 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~ 636 (954)
+++.++++++. +.. +|..+ .+.|++|++++| .+..+|. .++++++|++|+|++|.+..+ |..++.
T Consensus 32 ~l~~l~~~~~~----l~~-lp~~~--~~~l~~L~L~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLG----LEK-VPKDL--PPDTALLDLQNN------KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTSC----CCS-CCCSC--CTTCCEEECCSS------CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CCeEEEecCCC----ccc-cCccC--CCCCeEEECCCC------cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC
Confidence 67777777664 222 33322 357788888888 6666654 577888888888888888766 677888
Q ss_pred CCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCcc
Q 036345 637 LVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTL 691 (954)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 691 (954)
+++|++|++++|. +..+|..+. ++|++|++++|......+..+..+++|++|
T Consensus 99 l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp CTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 8888888888876 667776654 678888887775432222234555555555
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=204.80 Aligned_cols=267 Identities=17% Similarity=0.147 Sum_probs=135.8
Q ss_pred EEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcCce
Q 036345 541 MLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHLRF 619 (954)
Q Consensus 541 ~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~ 619 (954)
+.+.+.++.+|..+. ++|++|++++|. +....+..|.++++|++|++++| .+..+ |..++++++|++
T Consensus 37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNR----ITYISNSDLQRCVNLQALVLTSN------GINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp ECCSTTCSSCCTTCC--TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTS------CCCEECTTTTTTCTTCCE
T ss_pred eCCCCCccccccccc--ccCcEEECCCCc----CcccCHHHhccCCCCCEEECCCC------ccCccCHhhcCCCCCCCE
Confidence 334444444444332 355555555554 23322334455555555555555 33333 233555555555
Q ss_pred eeccCccccccccc-ccCCCCccEEeccccCCCccccc--cccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEe
Q 036345 620 LKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQ--GIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVV 696 (954)
Q Consensus 620 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 696 (954)
|+|++|.++.+|.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|..+..++.
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------------- 167 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---------------- 167 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT----------------
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH----------------
Confidence 55555555555444 4555555555555554 444444 344555555555554422221110
Q ss_pred cCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCC
Q 036345 697 SRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPN 776 (954)
Q Consensus 697 ~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (954)
..+..+++|+.|++++|..... .+..+..+++
T Consensus 168 ------------------------------------~~~~~l~~L~~L~l~~n~l~~~------------~~~~l~~l~~ 199 (353)
T 2z80_A 168 ------------------------------------KDFAGLTFLEELEIDASDLQSY------------EPKSLKSIQN 199 (353)
T ss_dssp ------------------------------------TTTTTCCEEEEEEEEETTCCEE------------CTTTTTTCSE
T ss_pred ------------------------------------HHccCCCCCCEEECCCCCcCcc------------CHHHHhcccc
Confidence 1122334555566665544321 1233455566
Q ss_pred CCEEEEeeecCCCCCCcchh-cccCccEEEEeCcCCCCcCC----CCCCCCCCceEeecCCCCceEeCcccccCCCCCCC
Q 036345 777 IEVLKIFQYKGKTVFPSWIM-SLCKLKVLLLSFCIKCEIMP----PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGT 851 (954)
Q Consensus 777 L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~c~~~~~l~----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 851 (954)
|++|++++|.+.. +|..+. .+++|+.|+|++|.+....+ ....++.++.+++.++.
T Consensus 200 L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~------------------ 260 (353)
T 2z80_A 200 VSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK------------------ 260 (353)
T ss_dssp EEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB------------------
T ss_pred CCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc------------------
Confidence 6666666666544 444332 45666666666665443211 11223333444433322
Q ss_pred CcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCC-CCCCCcceEEEecCcc
Q 036345 852 SATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQL-LRSTTLENLEIKKCPI 926 (954)
Q Consensus 852 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~ 926 (954)
+.+.. +..+ +..+..+++|+.|++++| .++.+|..+ ..+++|++|++++|+.
T Consensus 261 -----------------l~~~~-l~~l----~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 261 -----------------ITDES-LFQV----MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -----------------CCHHH-HHHH----HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----------------ccCcc-hhhh----HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 11100 0111 123456889999999998 588899875 6789999999999974
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=2.2e-19 Score=203.99 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCce-------------eEEEecCCCccc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFL-------------RTLKITGESAGV 600 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L-------------r~L~L~~~~~~~ 600 (954)
...++.+.++++.+..+|..+..+++|++|++++|. +.+.+|..++.++.| +.|++++|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~----~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~---- 81 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE----WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL---- 81 (454)
T ss_dssp ------------------------CCHHHHHHHHHH----HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS----
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc----ccccCCcccccchhcchhhhhhhhccCCCEEEecCC----
Confidence 456788888888887788888888888888888875 333455555555543 66666666
Q ss_pred cccccccchhhhccCcCceeeccCcccccccc
Q 036345 601 EKSIREIPKEIEKLKHLRFLKLSQVDLEELPE 632 (954)
Q Consensus 601 ~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 632 (954)
.+..+|.. .++|++|++++|.++.+|.
T Consensus 82 --~l~~lp~~---~~~L~~L~l~~n~l~~lp~ 108 (454)
T 1jl5_A 82 --GLSSLPEL---PPHLESLVASCNSLTELPE 108 (454)
T ss_dssp --CCSCCCSC---CTTCSEEECCSSCCSSCCC
T ss_pred --ccccCCCC---cCCCCEEEccCCcCCcccc
Confidence 44444431 2455555555555555543
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.1e-18 Score=204.34 Aligned_cols=119 Identities=26% Similarity=0.283 Sum_probs=92.5
Q ss_pred CceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhcc
Q 036345 535 EKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKL 614 (954)
Q Consensus 535 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 614 (954)
.+++.++++++.+..+|..+. ++|++|++++|. +.. +|. .+++|++|+|++| .+..+|. .+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~----l~~-lp~---~l~~L~~L~Ls~N------~l~~lp~---~l 100 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN----LTS-LPA---LPPELRTLEVSGN------QLTSLPV---LP 100 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC----CSC-CCC---CCTTCCEEEECSC------CCSCCCC---CC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC----CCC-CCC---cCCCCCEEEcCCC------cCCcCCC---CC
Confidence 346788888888888887665 789999998886 333 333 5788999999998 6777776 67
Q ss_pred CcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCC
Q 036345 615 KHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPK 680 (954)
Q Consensus 615 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 680 (954)
++|++|+|++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++|. +..+|.
T Consensus 101 ~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~ 158 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA 158 (622)
T ss_dssp TTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC
T ss_pred CCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC
Confidence 889999999999888887 67889999999887 7778864 4788999998884 344554
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.4e-18 Score=197.42 Aligned_cols=303 Identities=18% Similarity=0.210 Sum_probs=150.4
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
+.+++.++++.|.+..+|.. +++|++|++++|. +.. ++. ..+.|++|++++| .+..+| .+++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~----l~~-l~~---~~~~L~~L~L~~n------~l~~lp-~~~~ 151 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN----LKA-LSD---LPPLLEYLGVSNN------QLEKLP-ELQN 151 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC----CSC-CCS---CCTTCCEEECCSS------CCSSCC-CCTT
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc----cCc-ccC---CCCCCCEEECcCC------CCCCCc-ccCC
Confidence 45677777777777766543 3677777777765 222 111 1157777777777 556666 4777
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
+++|++|++++|.++.+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.. ..+|... ++|++|++
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~~---~~L~~L~l 222 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSL-KKLPDLP---LSLESIVA 222 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC-SSCCCCC---TTCCEEEC
T ss_pred CCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcC-CcCCCCc---CcccEEEC
Confidence 777777777777777776543 477777777776 56666 477777777777777743 3444432 34555543
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
..+... .+..+..+.+++ .+.+.+.. +..+. ...++|+.|++++|..... + ..
T Consensus 223 ~~n~l~--~lp~~~~l~~L~-~L~l~~N~-l~~l~-------~~~~~L~~L~l~~N~l~~l-------------~---~~ 275 (454)
T 1jl5_A 223 GNNILE--ELPELQNLPFLT-TIYADNNL-LKTLP-------DLPPSLEALNVRDNYLTDL-------------P---EL 275 (454)
T ss_dssp CSSCCS--SCCCCTTCTTCC-EEECCSSC-CSSCC-------SCCTTCCEEECCSSCCSCC-------------C---CC
T ss_pred cCCcCC--cccccCCCCCCC-EEECCCCc-CCccc-------ccccccCEEECCCCccccc-------------C---cc
Confidence 332221 111122222222 22222210 00000 0124555555555543211 0 01
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCC-CCCceEeecCCCCceEeCcccccCCCCCCCC
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKL-PSLEVLSIWNMNSVKTVGDEFLGIGGDNGTS 852 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 852 (954)
+++|++|++++|.+.+ +|.. .++|+.|++++|.+.. ++ .+ ++|+.|++++|. +..+|
T Consensus 276 ~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~---~~~~~L~~L~Ls~N~-l~~lp------------- 333 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNK-LIELP------------- 333 (454)
T ss_dssp CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSC-CSCCC-------------
T ss_pred cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc---CCcCcCCEEECCCCc-ccccc-------------
Confidence 2455555555555443 3321 1355555555554332 11 12 355555555554 22222
Q ss_pred cCCcccccCcccceeeccccccccccccccccccccccccceecccccccCc--CCCCCCCCC-------------CCcc
Q 036345 853 ATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLK--SLPDQLLRS-------------TTLE 917 (954)
Q Consensus 853 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~--~lp~~~~~l-------------~~L~ 917 (954)
..+++|+.|+++++. +..++ . .+++|+.|++++|.... .+|..+..+ ++|+
T Consensus 334 ------~~~~~L~~L~L~~N~-l~~lp----~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 334 ------ALPPRLERLIASFNH-LAEVP----E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp ------CCCTTCCEEECCSSC-CSCCC----C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------
T ss_pred ------ccCCcCCEEECCCCc-ccccc----c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCC
Confidence 135667777776653 33322 1 35677777777764333 355555554 6677
Q ss_pred eEEEecCcc
Q 036345 918 NLEIKKCPI 926 (954)
Q Consensus 918 ~L~l~~c~~ 926 (954)
.|++++|+.
T Consensus 400 ~L~ls~N~l 408 (454)
T 1jl5_A 400 QLHVETNPL 408 (454)
T ss_dssp ---------
T ss_pred EEECCCCcC
Confidence 777777653
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.1e-18 Score=209.62 Aligned_cols=146 Identities=25% Similarity=0.244 Sum_probs=120.1
Q ss_pred EEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhhccCcCc
Q 036345 540 LMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKLKHLR 618 (954)
Q Consensus 540 L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~ 618 (954)
++.++.+++.+|..+. ++++.|++++|. +....+..|.++++|++|+|++| .+..+|. .|.+|++|+
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~----i~~l~~~~f~~l~~L~~L~Ls~N------~i~~i~~~~f~~L~~L~ 103 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRC------EIQTIEDGAYQSLSHLS 103 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTC------CCCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCCC----CCCCCHHHHhCCCCCCEEECCCC------cCCCcChhHhcCCCCCC
Confidence 3444455667787653 589999999997 66656678999999999999999 7888865 699999999
Q ss_pred eeeccCcccccccc-cccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccc-cCCCCCCCCCCCCccCceE
Q 036345 619 FLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLD-YMPKGIERLTCLRTLRELV 695 (954)
Q Consensus 619 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~ 695 (954)
+|+|++|.++.+|. .+.+|.+|++|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|++..
T Consensus 104 ~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 104 TLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp EEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 99999999999986 47999999999999998 777775 48999999999999996533 3567788899999987665
Q ss_pred ecC
Q 036345 696 VSR 698 (954)
Q Consensus 696 ~~~ 698 (954)
+..
T Consensus 183 N~l 185 (635)
T 4g8a_A 183 NKI 185 (635)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.1e-18 Score=188.38 Aligned_cols=245 Identities=21% Similarity=0.178 Sum_probs=170.2
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCc
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLR 618 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~ 618 (954)
.+++..+.+..+|..+. ++|+.|+++++. +....+..|.++++|++|++++|.+. .+...|..+..+++|+
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~----l~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSSNGLS---FKGCCSQSDFGTTSLK 81 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCC---EEEEEEHHHHSCSCCC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc----cCccCHhHhhccccCCEEECCCCccC---cccCcccccccccccC
Confidence 45666667777776543 689999999886 45544556788999999999998332 2222367777899999
Q ss_pred eeeccCcccccccccccCCCCccEEeccccCCCccccc--cccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEe
Q 036345 619 FLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQ--GIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVV 696 (954)
Q Consensus 619 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 696 (954)
+|+|++|.+..+|..+..+++|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|.+..+
T Consensus 82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 9999999999999889999999999999987 666654 6888999999999988765555666777777777643211
Q ss_pred cCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCC
Q 036345 697 SRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPN 776 (954)
Q Consensus 697 ~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (954)
.. . .......+..+++|+.|++++|..... .+..+..+++
T Consensus 161 ~l--------------~--------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~ 200 (306)
T 2z66_A 161 SF--------------Q--------------ENFLPDIFTELRNLTFLDLSQCQLEQL------------SPTAFNSLSS 200 (306)
T ss_dssp EE--------------G--------------GGEECSCCTTCTTCCEEECTTSCCCEE------------CTTTTTTCTT
T ss_pred cc--------------c--------------cccchhHHhhCcCCCEEECCCCCcCCc------------CHHHhcCCCC
Confidence 00 0 001122344566777777777765432 1234566677
Q ss_pred CCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-CCCCCC-CCceEeecCCC
Q 036345 777 IEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-PLGKLP-SLEVLSIWNMN 833 (954)
Q Consensus 777 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~-~L~~L~L~~~~ 833 (954)
|++|++++|.+....+..+..+++|+.|+|++|.+....+ .+..+| +|+.|+|++|+
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 8888888877766223356677788888888887766544 366664 78888887776
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.4e-18 Score=198.42 Aligned_cols=241 Identities=19% Similarity=0.196 Sum_probs=179.2
Q ss_pred eEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhhhccC
Q 036345 537 LYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEIEKLK 615 (954)
Q Consensus 537 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~ 615 (954)
...++..+..+..+|..+. ++++.|++++|. +....+..|.++++|++|+|++| .+..++ ..+.+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n------~i~~~~~~~~~~l~ 123 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN----IQMIQADTFRHLHHLEVLQLGRN------SIRQIEVGAFNGLA 123 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSC----CCEECTTTTTTCTTCCEEECCSS------CCCEECTTTTTTCT
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCc----CceECHHHcCCCCCCCEEECCCC------ccCCcChhhccCcc
Confidence 3456666677777776553 689999999886 55555677889999999999999 666664 6788999
Q ss_pred cCceeeccCccccccccc-ccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccccCCC-CCCCCCCCCccC
Q 036345 616 HLRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDYMPK-GIERLTCLRTLR 692 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~ 692 (954)
+|++|+|++|.++.+|.. +..+++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+..+++|+.|+
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 999999999999988765 7889999999999988 666665 578899999999998777777665 366777777764
Q ss_pred ceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCC
Q 036345 693 ELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALR 772 (954)
Q Consensus 693 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (954)
+..+. +..+ ..+..+++|+.|+|++|.+... .+..+.
T Consensus 203 L~~n~-----l~~~--------------------------~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~ 239 (452)
T 3zyi_A 203 LGMCN-----IKDM--------------------------PNLTPLVGLEELEMSGNHFPEI------------RPGSFH 239 (452)
T ss_dssp CTTSC-----CSSC--------------------------CCCTTCTTCCEEECTTSCCSEE------------CGGGGT
T ss_pred CCCCc-----cccc--------------------------ccccccccccEEECcCCcCccc------------Cccccc
Confidence 32211 1100 1234567888888888776533 234566
Q ss_pred CCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCC
Q 036345 773 PNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMN 833 (954)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~ 833 (954)
.+++|++|++++|.+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 778888888888888774566777888888888888877654443 6778888888888887
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=196.00 Aligned_cols=241 Identities=20% Similarity=0.224 Sum_probs=180.4
Q ss_pred eEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhhhccC
Q 036345 537 LYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEIEKLK 615 (954)
Q Consensus 537 lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~ 615 (954)
.+.++..+..+..+|..+. ++++.|++++|. +....+..|.++++|++|+|++| .+..++ ..+.+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n------~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQ----IQIIKVNSFKHLRHLEILQLSRN------HIRTIEIGAFNGLA 112 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCC----CCEECTTTTSSCSSCCEEECCSS------CCCEECGGGGTTCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc----CCeeCHHHhhCCCCCCEEECCCC------cCCccChhhccCCc
Confidence 3456677777777787654 689999999986 55555677889999999999999 666664 5688999
Q ss_pred cCceeeccCcccccccc-cccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccccCCC-CCCCCCCCCccC
Q 036345 616 HLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDYMPK-GIERLTCLRTLR 692 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~ 692 (954)
+|++|+|++|.++.+|. .+..+++|++|+|++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|+.|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 99999999999998876 58899999999999988 666664 578899999999998777776665 467777777774
Q ss_pred ceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCC
Q 036345 693 ELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALR 772 (954)
Q Consensus 693 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (954)
+..+ .+..+ ..+..+++|+.|+|++|.+... .+..+.
T Consensus 192 L~~n-----~l~~~--------------------------~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~ 228 (440)
T 3zyj_A 192 LAMC-----NLREI--------------------------PNLTPLIKLDELDLSGNHLSAI------------RPGSFQ 228 (440)
T ss_dssp CTTS-----CCSSC--------------------------CCCTTCSSCCEEECTTSCCCEE------------CTTTTT
T ss_pred CCCC-----cCccc--------------------------cccCCCcccCEEECCCCccCcc------------Chhhhc
Confidence 3221 11110 1234567888888888765532 234566
Q ss_pred CCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCC
Q 036345 773 PNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMN 833 (954)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~ 833 (954)
.+++|++|++++|.+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 778888888888888774566677888888888888877655443 6778888888888887
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=195.82 Aligned_cols=252 Identities=18% Similarity=0.196 Sum_probs=192.5
Q ss_pred CCceEEEEEEeccccCCcc-cccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTFPV-SIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
+.+++.|+++++.+..++. .+..+++|++|++++|. +....+..|.++++|++|++++| .+..+|.. +
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~ 120 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG----INTIEEDSFSSLGSLEHLDLSYN------YLSNLSSSWF 120 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCSS------CCSSCCHHHH
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc----cCccCHhhcCCCCCCCEEECCCC------cCCcCCHhHh
Confidence 4689999999999988665 68899999999999986 55555677899999999999999 77888766 8
Q ss_pred hccCcCceeeccCcccccccc--cccCCCCccEEeccccCCCcccc-ccccCCCCCCEEeccCccccccCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELPE--TCCELVNLQTLDIEACGSLKRLP-QGIGKLVNLRHLMISHNVYLDYMPKGIERLTCL 688 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 688 (954)
+++++|++|++++|.+..+|. .+..+++|++|++++|..+..++ ..+..+++|++|++++|......|..+..+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 999999999999999999987 78999999999999996566664 568899999999999997666667778777777
Q ss_pred CccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHh
Q 036345 689 RTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATS 768 (954)
Q Consensus 689 ~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 768 (954)
++|++..+. +... ....+..+++|+.|++++|....... ...
T Consensus 201 ~~L~l~~n~--------------------------l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~---------~~l 242 (353)
T 2z80_A 201 SHLILHMKQ--------------------------HILL---LEIFVDVTSSVECLELRDTDLDTFHF---------SEL 242 (353)
T ss_dssp EEEEEECSC--------------------------STTH---HHHHHHHTTTEEEEEEESCBCTTCCC---------C--
T ss_pred CeecCCCCc--------------------------cccc---hhhhhhhcccccEEECCCCccccccc---------ccc
Confidence 776432211 0111 11122346788899998887653210 011
Q ss_pred hcCCCCCCCCEEEEeeecCCC----CCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCC
Q 036345 769 EALRPNPNIEVLKIFQYKGKT----VFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMN 833 (954)
Q Consensus 769 ~~l~~~~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~ 833 (954)
......+.++.+++.++.+.. .+|.++..+++|+.|+|++|.+....+. ++.+++|+.|+|++|+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 122345678888888776654 2577788899999999999987754444 5889999999999987
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.3e-18 Score=182.52 Aligned_cols=218 Identities=23% Similarity=0.249 Sum_probs=137.6
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCc
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKH 616 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~ 616 (954)
+.++...+.+..+|..+ .++|+.|+++++. +....+..|..+++|++|++++| .+..+ |..+.++++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~----i~~~~~~~~~~~~~L~~L~l~~n------~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR----ISHVPAASFRACRNLTILWLHSN------VLARIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSS------CCCEECTTTTTTCTT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc----CCccCHHHcccCCCCCEEECCCC------ccceeCHhhcCCccC
Confidence 34555566666666543 4577777777765 44444455677777777777777 55555 556777777
Q ss_pred CceeeccCcc-cccc-cccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCC-CCCCCCCCCccCc
Q 036345 617 LRFLKLSQVD-LEEL-PETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPK-GIERLTCLRTLRE 693 (954)
Q Consensus 617 L~~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~ 693 (954)
|++|++++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++++|.. ..+|. .++.+++
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~------ 154 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGN------ 154 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT------
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCC------
Confidence 7777777776 6666 55677777777777777763333345566777777777777643 23332 2344444
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
|+.|++++|.+... ....+..
T Consensus 155 -----------------------------------------------L~~L~l~~n~l~~~------------~~~~~~~ 175 (285)
T 1ozn_A 155 -----------------------------------------------LTHLFLHGNRISSV------------PERAFRG 175 (285)
T ss_dssp -----------------------------------------------CCEEECCSSCCCEE------------CTTTTTT
T ss_pred -----------------------------------------------ccEEECCCCccccc------------CHHHhcC
Confidence 44444444433211 0122445
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCC
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMN 833 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~ 833 (954)
+++|++|++++|.+....|.++..+++|+.|+|++|.+....+. +..+++|+.|++++|+
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 66777777777777664477777788888888888876654433 6778888888888877
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=8.2e-21 Score=218.31 Aligned_cols=359 Identities=16% Similarity=0.095 Sum_probs=212.3
Q ss_pred CCceEEEEEEeccccCCc--ccccccCcceEEEeeccCCccccCC----CchhhhcCCCceeEEEecCCCcccccccccc
Q 036345 534 KEKLYHLMLMINLFSTFP--VSIRYAKKLRSLFLVANGSFKVLSP----VLPGLFDQLTFLRTLKITGESAGVEKSIREI 607 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l 607 (954)
++++++|+++++.+...+ ..+..+++|++|++++|. +.. .++..+..+++|++|+|++| .+...
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~----l~~~~~~~l~~~l~~~~~L~~L~Ls~n------~l~~~ 71 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG----LTEARCKDISSALRVNPALAELNLRSN------ELGDV 71 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC----CCHHHHHHHHHHHHTCTTCCEEECTTC------CCHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC----CCHHHHHHHHHHHHhCCCcCEEeCCCC------cCChH
Confidence 456788888888776422 226678888888888876 221 24556777888888888888 33321
Q ss_pred -chhh-hccC----cCceeeccCcccc-----cccccccCCCCccEEeccccCCCcc-ccccc-----cCCCCCCEEecc
Q 036345 608 -PKEI-EKLK----HLRFLKLSQVDLE-----ELPETCCELVNLQTLDIEACGSLKR-LPQGI-----GKLVNLRHLMIS 670 (954)
Q Consensus 608 -p~~i-~~L~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i-----~~l~~L~~L~l~ 670 (954)
+..+ ..+. +|++|+|++|.+. .+|..+..+++|++|++++|. +.. .+..+ ...++|++|+++
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECC
Confidence 2222 2344 6888888888877 467788888888888888887 432 12212 235678888888
Q ss_pred Cccccc----cCCCCCCCCCCCCccCceEecCCccCccccc-----ccccCCceeEEcCCCCCCCccccccccCccCCCC
Q 036345 671 HNVYLD----YMPKGIERLTCLRTLRELVVSRKGCNLGGLR-----HLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNL 741 (954)
Q Consensus 671 ~~~~~~----~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~-----~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L 741 (954)
+|.... .++..+..+++|++|++..+.........+. ...+++ .+.+.+..-...........+..+++|
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 885433 2344455567777776554432211111111 011232 444443311110000122345567899
Q ss_pred ceEEEEecCCcccccchhhhhhHHHHhhc-CCCCCCCCEEEEeeecCCCC----CCcchhcccCccEEEEeCcCCCCcCC
Q 036345 742 VCLELWFDREEEEATDENEAAKHEATSEA-LRPNPNIEVLKIFQYKGKTV----FPSWIMSLCKLKVLLLSFCIKCEIMP 816 (954)
Q Consensus 742 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~L~~c~~~~~l~ 816 (954)
+.|++++|..... ....+.+. ..++++|++|++++|.+... +|..+..+++|++|+|++|.+....+
T Consensus 230 ~~L~Ls~n~l~~~--------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 230 RELALGSNKLGDV--------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp CEEECCSSBCHHH--------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred cEEeccCCcCChH--------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 9999988865421 11222222 33578999999998876552 45566678899999999987643211
Q ss_pred -C-----CCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccc-cccccc-c
Q 036345 817 -P-----LGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFG-EEDNIT-V 888 (954)
Q Consensus 817 -~-----l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~-~~~~~~-~ 888 (954)
. ....++|+.|++++|. +...+...+.. ....+++|++|+++++. +...... ....+. .
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~-----------~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSS-----------VLAQNRFLLELQISNNR-LEDAGVRELCQGLGQP 368 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH-----------HHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTST
T ss_pred HHHHHHhccCCccceeeEcCCCC-CchHHHHHHHH-----------HHhhCCCccEEEccCCc-cccccHHHHHHHHcCC
Confidence 1 1234689999999887 33221111100 01246888888888763 3322111 001111 2
Q ss_pred ccccceecccccccCc-----CCCCCCCCCCCcceEEEecCcc
Q 036345 889 MPQLNSLKIENCSKLK-----SLPDQLLRSTTLENLEIKKCPI 926 (954)
Q Consensus 889 ~p~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~c~~ 926 (954)
.++|++|++++|. +. .+|..+..+++|++|++++|+.
T Consensus 369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 5788999998884 55 5666666678888999988874
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=2e-17 Score=178.55 Aligned_cols=100 Identities=21% Similarity=0.301 Sum_probs=75.6
Q ss_pred eEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hhccCcCceeeccCcccccc---cccccC
Q 036345 561 RSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IEKLKHLRFLKLSQVDLEEL---PETCCE 636 (954)
Q Consensus 561 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~l---p~~i~~ 636 (954)
+.+++.++. +.. +|. .-.+.|++|++++| .+..+|.. +.++++|++|+|++|.+..+ |..+..
T Consensus 10 ~~l~c~~~~----l~~-ip~--~~~~~l~~L~L~~n------~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKG----LTS-VPT--GIPSSATRLELESN------KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76 (306)
T ss_dssp TEEECCSSC----CSS-CCS--CCCTTCCEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred CEEEcCCCC----ccc-CCC--CCCCCCCEEECCCC------ccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence 355665554 332 333 22367899999988 77778765 68899999999999988755 677778
Q ss_pred CCCccEEeccccCCCccccccccCCCCCCEEeccCccc
Q 036345 637 LVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 637 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 674 (954)
+++|++|++++|. +..+|..+..+++|++|++++|..
T Consensus 77 ~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 77 TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp CSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEE
T ss_pred ccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcc
Confidence 8999999999887 777888888899999999888743
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=5.9e-19 Score=191.27 Aligned_cols=248 Identities=17% Similarity=0.131 Sum_probs=125.1
Q ss_pred cccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETC 634 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i 634 (954)
..+++|+.|++++|. +....+..|..+++|++|+|++| .+..++. +..+++|++|++++|.++.+|.
T Consensus 31 ~~~~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~-- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSN------VLYETLD-LESLSTLRTLDLNNNYVQELLV-- 97 (317)
T ss_dssp TTGGGCSEEECTTSC----CCCCCHHHHTTCTTCCEEECTTS------CCEEEEE-ETTCTTCCEEECCSSEEEEEEE--
T ss_pred ccCCCCCEEECcCCc----cCcCCHHHhhCCCcCCEEECCCC------cCCcchh-hhhcCCCCEEECcCCccccccC--
Confidence 344566666666664 44444555666666666666666 4444433 5666666666666666665552
Q ss_pred cCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCc
Q 036345 635 CELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRG 714 (954)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~ 714 (954)
+++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++
T Consensus 98 --~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~--------------------------- 145 (317)
T 3o53_A 98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSR--------------------------- 145 (317)
T ss_dssp --CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSS---------------------------
T ss_pred --CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCC---------------------------
Confidence 2566666666665 4444432 2556666666665432222223333333
Q ss_pred eeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcC-CCCCCCCEEEEeeecCCCCCCc
Q 036345 715 SFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEAL-RPNPNIEVLKIFQYKGKTVFPS 793 (954)
Q Consensus 715 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~lp~ 793 (954)
|+.|++++|...... +..+ ..+++|++|++++|.+.. +|.
T Consensus 146 --------------------------L~~L~Ls~N~l~~~~------------~~~~~~~l~~L~~L~L~~N~l~~-~~~ 186 (317)
T 3o53_A 146 --------------------------VQYLDLKLNEIDTVN------------FAELAASSDTLEHLNLQYNFIYD-VKG 186 (317)
T ss_dssp --------------------------EEEEECTTSCCCEEE------------GGGGGGGTTTCCEEECTTSCCCE-EEC
T ss_pred --------------------------CCEEECCCCCCCccc------------HHHHhhccCcCCEEECCCCcCcc-ccc
Confidence 444444443332110 0111 123455555555555444 332
Q ss_pred chhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc
Q 036345 794 WIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 794 ~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
.. .+++|+.|+|++|.+....+.+..+++|+.|++++|. +..+|..+ ..+++|+.|++.+++
T Consensus 187 ~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~----------------~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 187 QV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL----------------RFSQNLEHFDLRGNG 248 (317)
T ss_dssp CC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC----------------CCCTTCCEEECTTCC
T ss_pred cc-ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh----------------hcCCCCCEEEccCCC
Confidence 22 3555666666655555444445555566666666554 44444322 134556666665544
Q ss_pred cccccccccccccccccccceecccccccCcCCC
Q 036345 874 EWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLP 907 (954)
Q Consensus 874 ~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp 907 (954)
-... ..+..+..+++|+.|++.+|..++..+
T Consensus 249 ~~~~---~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 249 FHCG---TLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CBHH---HHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred ccCc---CHHHHHhccccceEEECCCchhccCCc
Confidence 1101 111223456777777777776666443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=8.7e-19 Score=189.96 Aligned_cols=242 Identities=14% Similarity=0.060 Sum_probs=180.8
Q ss_pred CCceEEEEEEeccccCCc-ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhh
Q 036345 534 KEKLYHLMLMINLFSTFP-VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIE 612 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 612 (954)
..+++.|++++|.+..++ ..+..+++|++|++++|. +....+ +..++.|++|++++| .+..+|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~--~~~l~~L~~L~Ls~n------~l~~l~---- 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV----LYETLD--LESLSTLRTLDLNNN------YVQELL---- 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC----CEEEEE--ETTCTTCCEEECCSS------EEEEEE----
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc----CCcchh--hhhcCCCCEEECcCC------cccccc----
Confidence 568999999999998755 578999999999999997 433333 789999999999999 676665
Q ss_pred ccCcCceeeccCcccccccccccCCCCccEEeccccCCCccc-cccccCCCCCCEEeccCccccccCCCCC-CCCCCCCc
Q 036345 613 KLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRL-PQGIGKLVNLRHLMISHNVYLDYMPKGI-ERLTCLRT 690 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i-~~L~~L~~ 690 (954)
.+++|++|++++|.+..++.. .+++|++|++++|. +..+ |..+..+++|++|++++|......|..+ ..+
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l----- 168 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS----- 168 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT-----
T ss_pred CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc-----
Confidence 458999999999999988754 47899999999998 5555 4578899999999999985433222222 123
Q ss_pred cCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhc
Q 036345 691 LRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEA 770 (954)
Q Consensus 691 L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 770 (954)
++|+.|++++|..... ..
T Consensus 169 ------------------------------------------------~~L~~L~L~~N~l~~~--------------~~ 186 (317)
T 3o53_A 169 ------------------------------------------------DTLEHLNLQYNFIYDV--------------KG 186 (317)
T ss_dssp ------------------------------------------------TTCCEEECTTSCCCEE--------------EC
T ss_pred ------------------------------------------------CcCCEEECCCCcCccc--------------cc
Confidence 3444455544443211 12
Q ss_pred CCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCC
Q 036345 771 LRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNG 850 (954)
Q Consensus 771 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 850 (954)
...+++|++|++++|.+.. +|..+..+++|+.|+|++|.+....+.+..+++|+.|++++|+........++
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~------- 258 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF------- 258 (317)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH-------
T ss_pred ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH-------
Confidence 2346789999999998887 88888899999999999998876666688999999999999983311111111
Q ss_pred CCcCCcccccCcccceeeccccccccc
Q 036345 851 TSATSSVNVAFRKLKELAFWGLYEWEE 877 (954)
Q Consensus 851 ~~~~~~~~~~f~~L~~L~l~~~~~l~~ 877 (954)
..+++|+.|.+.++..+..
T Consensus 259 --------~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 259 --------SKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp --------HTCHHHHHHHHHHHHHHHS
T ss_pred --------hccccceEEECCCchhccC
Confidence 2678888888887665544
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.6e-17 Score=189.64 Aligned_cols=224 Identities=22% Similarity=0.214 Sum_probs=179.6
Q ss_pred CCceEEEEEEeccccCC-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
+.+++.|++++|.+..+ +..+..+++|+.|++++|. +....+..|.++++|++|+|++| .+..+|.. +
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~ 143 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS----IRQIEVGAFNGLASLNTLELFDN------WLTVIPSGAF 143 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSS------CCSBCCTTTS
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc----cCCcChhhccCcccCCEEECCCC------cCCccChhhh
Confidence 56899999999998874 5678999999999999997 55556677899999999999999 77777654 8
Q ss_pred hccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCccccccCCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVYLDYMPKGIERLTCLR 689 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 689 (954)
+++++|++|+|++|.+..+|. .+.++++|++|++++|..+..+|.. +..+++|++|++++|.. ..+| .+..+++|+
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~ 221 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMP-NLTPLVGLE 221 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCC-CCTTCTTCC
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccc-ccccccccc
Confidence 899999999999999998876 6899999999999998888888864 78999999999999854 5555 466667777
Q ss_pred ccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhh
Q 036345 690 TLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSE 769 (954)
Q Consensus 690 ~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (954)
.|++..+. +.......+..+++|+.|++++|..... ...
T Consensus 222 ~L~Ls~N~-----------------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~ 260 (452)
T 3zyi_A 222 ELEMSGNH-----------------------------FPEIRPGSFHGLSSLKKLWVMNSQVSLI------------ERN 260 (452)
T ss_dssp EEECTTSC-----------------------------CSEECGGGGTTCTTCCEEECTTSCCCEE------------CTT
T ss_pred EEECcCCc-----------------------------CcccCcccccCccCCCEEEeCCCcCceE------------CHH
Confidence 66432211 1111223456678999999998876533 234
Q ss_pred cCCCCCCCCEEEEeeecCCCCCC-cchhcccCccEEEEeCcCC
Q 036345 770 ALRPNPNIEVLKIFQYKGKTVFP-SWIMSLCKLKVLLLSFCIK 811 (954)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~c~~ 811 (954)
.+..+++|+.|++++|.+.. +| ..+..+++|+.|+|++|+.
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCE
T ss_pred HhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCCc
Confidence 56778999999999999887 55 4566899999999999974
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=187.58 Aligned_cols=225 Identities=19% Similarity=0.185 Sum_probs=180.0
Q ss_pred CCceEEEEEEeccccCCc-ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hh
Q 036345 534 KEKLYHLMLMINLFSTFP-VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i 611 (954)
+.+++.|+++.|.+..++ ..+..+++|++|++++|. +....+..|.++++|++|+|++| .+..+|. .+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~ 132 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH----IRTIEIGAFNGLANLNTLELFDN------RLTTIPNGAF 132 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC----CCEECGGGGTTCSSCCEEECCSS------CCSSCCTTTS
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc----CCccChhhccCCccCCEEECCCC------cCCeeCHhHh
Confidence 578899999999988754 678999999999999997 55556677999999999999999 7778865 58
Q ss_pred hccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccccCCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDYMPKGIERLTCLR 689 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 689 (954)
.++++|++|+|++|.+..+|. .+..+++|++|++++|..+..+|. .+..+++|++|++++|. +..+| .+..+++|+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLD 210 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccC
Confidence 999999999999999998876 689999999999999887888876 48899999999999985 45666 366667777
Q ss_pred ccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhh
Q 036345 690 TLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSE 769 (954)
Q Consensus 690 ~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (954)
.|++..+. +.......+..+++|+.|+|++|..... ...
T Consensus 211 ~L~Ls~N~-----------------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~~~ 249 (440)
T 3zyj_A 211 ELDLSGNH-----------------------------LSAIRPGSFQGLMHLQKLWMIQSQIQVI------------ERN 249 (440)
T ss_dssp EEECTTSC-----------------------------CCEECTTTTTTCTTCCEEECTTCCCCEE------------CTT
T ss_pred EEECCCCc-----------------------------cCccChhhhccCccCCEEECCCCceeEE------------Chh
Confidence 66432211 1111223456678999999998876543 234
Q ss_pred cCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCC
Q 036345 770 ALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIK 811 (954)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~ 811 (954)
.+..+++|++|+|++|.+....+..+..+++|+.|+|++|+.
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 567889999999999999883344567899999999999874
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=6e-17 Score=172.74 Aligned_cols=218 Identities=20% Similarity=0.221 Sum_probs=154.0
Q ss_pred eEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhhhccCcCceeeccCcccccc-cccccCCC
Q 036345 561 RSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEIEKLKHLRFLKLSQVDLEEL-PETCCELV 638 (954)
Q Consensus 561 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~ 638 (954)
+++++.++. +.. +|. ...+.|++|+++++ .+..+| ..+.++++|++|+|++|.+..+ |..+..++
T Consensus 14 ~~~~c~~~~----l~~-ip~--~~~~~l~~L~l~~n------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 14 VTTSCPQQG----LQA-VPV--GIPAASQRIFLHGN------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp CEEECCSSC----CSS-CCT--TCCTTCSEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred eEEEcCcCC----ccc-CCc--CCCCCceEEEeeCC------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 456665554 332 332 23467888888888 666665 4578888888888888888866 66788888
Q ss_pred CccEEeccccCCCccc-cccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeE
Q 036345 639 NLQTLDIEACGSLKRL-PQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFR 717 (954)
Q Consensus 639 ~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~ 717 (954)
+|++|++++|..+..+ |..+..+++|++|++++|......|..+..+++
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------------------------ 130 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA------------------------------ 130 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT------------------------------
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC------------------------------
Confidence 8888888888645555 566778888888888877543333333444444
Q ss_pred EcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCc-chh
Q 036345 718 IRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPS-WIM 796 (954)
Q Consensus 718 i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~~~ 796 (954)
|+.|++++|..... ....+..+++|++|++++|.+.. +|. ++.
T Consensus 131 -----------------------L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~ 174 (285)
T 1ozn_A 131 -----------------------LQYLYLQDNALQAL------------PDDTFRDLGNLTHLFLHGNRISS-VPERAFR 174 (285)
T ss_dssp -----------------------CCEEECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCE-ECTTTTT
T ss_pred -----------------------CCEEECCCCccccc------------CHhHhccCCCccEEECCCCcccc-cCHHHhc
Confidence 44444444433211 11235678899999999999887 554 588
Q ss_pred cccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc
Q 036345 797 SLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 797 ~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
.+++|+.|+|++|.+....| .++.+++|+.|++++|. +..++...+ ..+++|+.|++.+.+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~---------------~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEAL---------------APLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHH---------------TTCTTCCEEECCSSC
T ss_pred CccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHc---------------ccCcccCEEeccCCC
Confidence 89999999999999877644 58899999999999997 555554332 268899999999876
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.3e-17 Score=188.00 Aligned_cols=216 Identities=17% Similarity=0.123 Sum_probs=154.2
Q ss_pred ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCccccccccccc
Q 036345 556 YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCC 635 (954)
Q Consensus 556 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~ 635 (954)
.+++|++|++++|. +....|..|..+++|++|+|++| .+..++. ++.+++|++|+|++|.++.+|..
T Consensus 32 ~~~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~-- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSN------VLYETLD-LESLSTLRTLDLNNNYVQELLVG-- 98 (487)
T ss_dssp TGGGCCEEECCSSC----CCCCCGGGGTTCTTCCEEECTTS------CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC--
T ss_pred cCCCccEEEeeCCc----CCCCCHHHHhCCCCCCEEEeeCC------CCCCCcc-cccCCCCCEEEecCCcCCCCCCC--
Confidence 34488888888886 55556677888888888888888 5555544 88888888888888888877743
Q ss_pred CCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCce
Q 036345 636 ELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGS 715 (954)
Q Consensus 636 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~ 715 (954)
++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|+.|++..+. +
T Consensus 99 --~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------------l--- 156 (487)
T 3oja_A 99 --PSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--------------I--- 156 (487)
T ss_dssp --TTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC--------------C---
T ss_pred --CCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC--------------C---
Confidence 788888888887 555554 246788888888886555455566677776666432211 0
Q ss_pred eEEcCCCCCCCccccccccC-ccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcc
Q 036345 716 FRIRGLGNVTHVDEAKNSEL-DKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSW 794 (954)
Q Consensus 716 l~i~~l~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~ 794 (954)
.......+ ..+++|+.|+|++|.+... .....+++|++|++++|.+.. +|..
T Consensus 157 ------------~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~-~~~~ 209 (487)
T 3oja_A 157 ------------DTVNFAELAASSDTLEHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAF-MGPE 209 (487)
T ss_dssp ------------CEEEGGGGGGGTTTCCEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCE-ECGG
T ss_pred ------------CCcChHHHhhhCCcccEEecCCCccccc--------------cccccCCCCCEEECCCCCCCC-CCHh
Confidence 01111112 2467788888888765432 223457888888888888877 7777
Q ss_pred hhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCC
Q 036345 795 IMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 795 ~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
+..+++|+.|+|++|.+....+.++.+++|+.|++++|+
T Consensus 210 ~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 888888888888888877655567888888888888887
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.3e-18 Score=206.82 Aligned_cols=134 Identities=17% Similarity=0.082 Sum_probs=66.9
Q ss_pred cccCcceEEEeeccCCccccCCC----chhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPV----LPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEEL 630 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l 630 (954)
..+++|++|++++|. +.+. ++..+..++.|+.|+++++.+.. .....++..+.++++|++|++++|.+..+
T Consensus 161 ~~~~~L~~L~L~~~~----~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 161 THCRKIKTLLMEESS----FSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-ISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HHCTTCSEEECTTCE----EECCCSHHHHHHHHHCCCCCEEECTTCCCSS-CCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred hhCCCCCEEECcccc----ccCcchhHHHHHHhcCCCccEEEeeccCCCc-cCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 355666666666653 1111 23334556666666666652210 00123344455566666666666666666
Q ss_pred cccccCCCCccEEeccccCCC---ccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCce
Q 036345 631 PETCCELVNLQTLDIEACGSL---KRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLREL 694 (954)
Q Consensus 631 p~~i~~L~~L~~L~L~~~~~l---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 694 (954)
|..+..+++|+.|+++.+... ...+..+..+++|++|+++++ ....+|..+..+++|+.|++.
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecC
Confidence 666666666666666543211 122334455555555555543 223344444455555555443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.5e-16 Score=182.48 Aligned_cols=236 Identities=14% Similarity=0.124 Sum_probs=154.8
Q ss_pred CCCceeEEEecCCCcccccccccc-chhhhccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCC
Q 036345 584 QLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLV 662 (954)
Q Consensus 584 ~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 662 (954)
.+++|++|+|++| .+..+ |..++++++|++|+|++|.+...++ ++.+++|++|+|++|. +..+|. .+
T Consensus 32 ~~~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGN------PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GP 99 (487)
T ss_dssp TGGGCCEEECCSS------CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CT
T ss_pred cCCCccEEEeeCC------cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CC
Confidence 3458888999888 56665 4678888889999998888886665 8888888888888886 666654 37
Q ss_pred CCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCc
Q 036345 663 NLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLV 742 (954)
Q Consensus 663 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 742 (954)
+|++|++++|... .+|.. .+++|+
T Consensus 100 ~L~~L~L~~N~l~-~~~~~-------------------------------------------------------~l~~L~ 123 (487)
T 3oja_A 100 SIETLHAANNNIS-RVSCS-------------------------------------------------------RGQGKK 123 (487)
T ss_dssp TCCEEECCSSCCC-CEEEC-------------------------------------------------------CCSSCE
T ss_pred CcCEEECcCCcCC-CCCcc-------------------------------------------------------ccCCCC
Confidence 8888888877432 21110 113455
Q ss_pred eEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchh-cccCccEEEEeCcCCCCcCCCCCCC
Q 036345 743 CLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIM-SLCKLKVLLLSFCIKCEIMPPLGKL 821 (954)
Q Consensus 743 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~c~~~~~l~~l~~l 821 (954)
.|++++|.+... .+..+..+++|+.|++++|.+....|.++. .+++|+.|+|++|.+... +....+
T Consensus 124 ~L~L~~N~l~~~------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l 190 (487)
T 3oja_A 124 NIYLANNKITML------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVF 190 (487)
T ss_dssp EEECCSSCCCSG------------GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCC
T ss_pred EEECCCCCCCCC------------CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccC
Confidence 555555544321 122334456777888887777664566665 678888888888876544 555568
Q ss_pred CCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccc
Q 036345 822 PSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCS 901 (954)
Q Consensus 822 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~ 901 (954)
++|+.|+|++|. +..++..+. .+++|+.|+++++. +..++ ..+..+++|+.|++++|+
T Consensus 191 ~~L~~L~Ls~N~-l~~~~~~~~----------------~l~~L~~L~Ls~N~-l~~lp----~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 191 AKLKTLDLSSNK-LAFMGPEFQ----------------SAAGVTWISLRNNK-LVLIE----KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TTCCEEECCSSC-CCEECGGGG----------------GGTTCSEEECTTSC-CCEEC----TTCCCCTTCCEEECTTCC
T ss_pred CCCCEEECCCCC-CCCCCHhHc----------------CCCCccEEEecCCc-Ccccc----hhhccCCCCCEEEcCCCC
Confidence 888888888887 555654421 56777777777653 33332 335567777777777776
Q ss_pred cC-cCCCCCCCCCCCcceEEEe
Q 036345 902 KL-KSLPDQLLRSTTLENLEIK 922 (954)
Q Consensus 902 ~l-~~lp~~~~~l~~L~~L~l~ 922 (954)
.. ..+|..+..++.|+.+.+.
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 43 2444445556666666654
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=4e-17 Score=176.39 Aligned_cols=202 Identities=18% Similarity=0.168 Sum_probs=116.7
Q ss_pred CCCceeEEEecCCCcccccccc-ccchhh--hccCcCceeeccCcccccccccccCC-----CCccEEeccccCCCcccc
Q 036345 584 QLTFLRTLKITGESAGVEKSIR-EIPKEI--EKLKHLRFLKLSQVDLEELPETCCEL-----VNLQTLDIEACGSLKRLP 655 (954)
Q Consensus 584 ~l~~Lr~L~L~~~~~~~~~~l~-~lp~~i--~~L~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp 655 (954)
+++.|++|+|++| .+. .+|..+ +.+++|++|+|++|.+..+|..++.+ ++|++|++++|. +..+|
T Consensus 93 ~l~~L~~L~L~~n------~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENL------EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEE------BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC
T ss_pred CcCCccEEEccCC------cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch
Confidence 4666666666666 443 345544 66666666666666666666655555 666666666666 33333
Q ss_pred -ccccCCCCCCEEeccCcccccc--CCCCC--CCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCcccc
Q 036345 656 -QGIGKLVNLRHLMISHNVYLDY--MPKGI--ERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEA 730 (954)
Q Consensus 656 -~~i~~l~~L~~L~l~~~~~~~~--~p~~i--~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~ 730 (954)
..+..+++|++|++++|..... +|..+ +.+++|++|++..+. + ......
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-----l---------------------~~~~~~ 219 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-----M---------------------ETPSGV 219 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-----C---------------------CCHHHH
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-----C---------------------cchHHH
Confidence 5566666666666666643222 12222 444444444221110 0 000000
Q ss_pred ccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcC
Q 036345 731 KNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCI 810 (954)
Q Consensus 731 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~ 810 (954)
.......+++|+.|++++|...... ....+..+++|++|++++|.+.. +|.++. ++|+.|+|++|.
T Consensus 220 ~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 220 CSALAAARVQLQGLDLSHNSLRDAA-----------GAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp HHHHHHTTCCCSEEECTTSCCCSSC-----------CCSCCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSC
T ss_pred HHHHHhcCCCCCEEECCCCcCCccc-----------chhhhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCC
Confidence 0111224567777777777654321 01223445788888888888775 777765 788888888887
Q ss_pred CCCcCCCCCCCCCCceEeecCCC
Q 036345 811 KCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 811 ~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
+... |.+..+++|+.|+|++|+
T Consensus 286 l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 286 LDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSC-CCTTTSCEEEEEECTTCT
T ss_pred CCCC-hhHhhCCCCCEEeccCCC
Confidence 7655 557888888888888876
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.2e-17 Score=178.39 Aligned_cols=104 Identities=20% Similarity=0.172 Sum_probs=63.4
Q ss_pred CCCCCCCEEEEeeecCCCCCCc---c-hhcccCccEEEEeCcCCCCcC--CCCCCCCCCceEeecCCCCceEeCcccccC
Q 036345 772 RPNPNIEVLKIFQYKGKTVFPS---W-IMSLCKLKVLLLSFCIKCEIM--PPLGKLPSLEVLSIWNMNSVKTVGDEFLGI 845 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~lp~---~-~~~l~~L~~L~L~~c~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 845 (954)
..+++|++|++++|.+.. +|. . +..+++|+.|+|++|.+.... +.+..+++|+.|+|++|. +..+|.
T Consensus 198 ~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~----- 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMET-PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK----- 270 (312)
T ss_dssp TSCTTCCEEECTTSCCCC-HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS-----
T ss_pred ccCCCCCEEECCCCcCcc-hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhh-----
Confidence 556777777777777653 322 2 225577777777777765544 335556777777777765 222221
Q ss_pred CCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecCc
Q 036345 846 GGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKCP 925 (954)
Q Consensus 846 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 925 (954)
.+ +++|+.|++++| .++.+|. +..+++|++|++++|+
T Consensus 271 ---------------------------------------~~--~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 271 ---------------------------------------GL--PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---------------------------------------SC--CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ---------------------------------------hc--cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 11 156666666666 3666665 6667777777777776
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=1.8e-15 Score=177.08 Aligned_cols=236 Identities=20% Similarity=0.185 Sum_probs=165.7
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
+.+++.|++++|.+..+|. .+++|++|++++|. +.. +|. .+++|++|++++| .+..+|. .
T Consensus 60 ~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~----l~~-lp~---~l~~L~~L~Ls~N------~l~~l~~---~ 119 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ----LTS-LPV---LPPGLLELSIFSN------PLTHLPA---L 119 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC----CSC-CCC---CCTTCCEEEECSC------CCCCCCC---C
T ss_pred CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc----CCc-CCC---CCCCCCEEECcCC------cCCCCCC---C
Confidence 4689999999999998877 57899999999997 443 343 7799999999999 7777877 6
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
+.+|++|++++|.++.+|.. +++|++|++++|. +..+|.. +.+|+.|++++|. +..+| ..+++|+.|++
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~L 188 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLP---MLPSGLQELSV 188 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCC---CCCTTCCEEEC
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCC-CCCCc---ccCCCCcEEEC
Confidence 78999999999999999975 4899999999997 7788763 5789999999885 45676 34566666643
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
..+.. ..+. ...++|+.|.++.|.+... + ..
T Consensus 189 s~N~l-----~~l~----------------------------~~~~~L~~L~L~~N~l~~l-------------~---~~ 219 (622)
T 3g06_A 189 SDNQL-----ASLP----------------------------TLPSELYKLWAYNNRLTSL-------------P---AL 219 (622)
T ss_dssp CSSCC-----SCCC----------------------------CCCTTCCEEECCSSCCSSC-------------C---CC
T ss_pred CCCCC-----CCCC----------------------------CccchhhEEECcCCccccc-------------C---CC
Confidence 22211 1100 0124666777766654321 1 12
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCc
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSA 853 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 853 (954)
+++|++|++++|.+.. +| ..+++|+.|+|++|.+.. +|. .+++|+.|+|++|. +..+|..+
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~--~~~~L~~L~Ls~N~-L~~lp~~l----------- 280 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM--LPSGLLSLSVYRNQ-LTRLPESL----------- 280 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-CCSCCGGG-----------
T ss_pred CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc--ccccCcEEeCCCCC-CCcCCHHH-----------
Confidence 3667777777777666 66 345677777777776553 444 56777777777776 55555432
Q ss_pred CCcccccCcccceeeccccc
Q 036345 854 TSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 854 ~~~~~~~f~~L~~L~l~~~~ 873 (954)
..+++|+.|++.+++
T Consensus 281 -----~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 281 -----IHLSSETTVNLEGNP 295 (622)
T ss_dssp -----GGSCTTCEEECCSCC
T ss_pred -----hhccccCEEEecCCC
Confidence 156777777777654
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=1.8e-17 Score=196.95 Aligned_cols=157 Identities=13% Similarity=0.013 Sum_probs=110.1
Q ss_pred CCceEEEEEEeccccC-Ccccccc-cCc-ceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh
Q 036345 534 KEKLYHLMLMINLFST-FPVSIRY-AKK-LRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~-~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~ 610 (954)
..+++.|+++.+.+.. .+..+.. +++ |++|.+++|..+. ...++....++++|++|+|++|.+.. .....++..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~~ 187 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSE-KDGKWLHEL 187 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEEC-CCSHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccC-cchhHHHHH
Confidence 4678899999887653 2233333 444 9999999886221 11234445689999999999993321 111114445
Q ss_pred hhccCcCceeeccCcccc-----cccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCcccc---ccCCCCC
Q 036345 611 IEKLKHLRFLKLSQVDLE-----ELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYL---DYMPKGI 682 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~i 682 (954)
+.++++|++|++++|.+. .++..+..+++|++|++++|. +..+|..+..+++|++|+++++... ...+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 678899999999999885 566677889999999999987 7778888999999999999864322 2233456
Q ss_pred CCCCCCCccCce
Q 036345 683 ERLTCLRTLREL 694 (954)
Q Consensus 683 ~~L~~L~~L~~~ 694 (954)
..+++|+.|...
T Consensus 267 ~~~~~L~~L~l~ 278 (592)
T 3ogk_B 267 VFPRKLCRLGLS 278 (592)
T ss_dssp CCCTTCCEEEET
T ss_pred hccccccccCcc
Confidence 667777776443
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.65 E-value=4e-15 Score=167.93 Aligned_cols=303 Identities=12% Similarity=0.030 Sum_probs=182.7
Q ss_pred CCceeechhhhhHHHHHh-hccCCCCCCceEEEEE--EecCCchHHHHHHHHhcCcccc---cccc-eEEEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKL-LCESSQQPNAIHVISL--VGMGGIGKTTLAQFAYNDNDVM---NSFE-IRMWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~s~~~~~ 243 (954)
+..++||+.+++++.+.+ .....+.....+.+.| +|++|+||||||+.+++..... ..|. .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4321100013456666 9999999999999998842111 0122 3678887777788
Q ss_pred HHHHHHHHHHhhcCCCC-cccHHHHHHHHHHHhc--CceeEEEecCCCCCC------ccChhhHHhhhcCC---C--CCc
Q 036345 244 FRVARAIIEALEGSASN-LGELQSLLQRIQTSIA--GKKFLLVLDDMWTDD------YSKWEPFNNCLMNG---L--RGS 309 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~------~~~~~~l~~~l~~~---~--~gs 309 (954)
..++..++.+++...+. ..+...+...+.+.+. +++++|||||+|.-. ...+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999998764322 2334556666666664 789999999996522 12233333333221 2 345
Q ss_pred EEEEecCchhHHhhhc--------C-cceEeCCCCCHHHHHHHHHHHHcCCCC-CCCchhHHHHHHHHHHhcC------C
Q 036345 310 KILVTTRKKTVAQMME--------S-TDVFSIKELSKQECWSLFKRFAFFGRH-PSECEQLEEIGRKIVSRCK------G 373 (954)
Q Consensus 310 ~iiiTtr~~~v~~~~~--------~-~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~i~~~c~------g 373 (954)
.+|+||+...+...+. . ...+++.+++.++++++|.+.+..... .... .+....|++.|+ |
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCC
Confidence 5888887655332111 1 223999999999999999765421111 1111 456677899999 9
Q ss_pred ChHHHHHHHhhhc-----CC---CCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCChhhhhHHhHhcCCC--CCccc
Q 036345 374 LPLAAKTIGSLLR-----FK---KTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFP--KDYNI 443 (954)
Q Consensus 374 lPlai~~~~~~l~-----~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i 443 (954)
.|..+..+..... .. -+.+.+..++.... . ...+.-++..||.+.+.++..++.+. .+..+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----~-----~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----A-----ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----c-----cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9976655543221 11 12334443332210 0 23344567889999999999888654 23345
Q ss_pred chHHHHHHHHHh--cccCCCCCchHHHHHHHHHHHHHhcCCceeee
Q 036345 444 EKDELIKVWMAQ--GYIGPKENEEMEIIGQEYFDYLATRSFFQEFE 487 (954)
Q Consensus 444 ~~~~li~~w~a~--g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 487 (954)
....+...+... ..... ... .......+++.|...+++....
T Consensus 329 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNV-KPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCC-CCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred cHHHHHHHHHHHHHhhcCC-CCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 555555544321 11111 111 1234567899999999998754
No 75
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=1.5e-16 Score=140.58 Aligned_cols=81 Identities=26% Similarity=0.476 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHhhhchhhHHH
Q 036345 4 AVINVVLDQLISISLQEAREELRLVVGVDQEVERLKRNFRAIQAVLVDAEQR--QVKEEAVRLWLDKLKHASYDMEDVLD 81 (954)
Q Consensus 4 ~~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~yd~ed~ld 81 (954)
|+|+++++||++ ++.+|+.++.|+++++++|+++|++|++||.||+.+ +.++++++.|+++||++|||+|||||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999 899999999999999999999999999999999987 56789999999999999999999999
Q ss_pred HHHHHHH
Q 036345 82 EWITARL 88 (954)
Q Consensus 82 ~~~~~~~ 88 (954)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999863
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=5.6e-19 Score=202.97 Aligned_cols=358 Identities=16% Similarity=0.117 Sum_probs=219.6
Q ss_pred CCceEEEEEEeccccC-----CcccccccCcceEEEeeccCCccccCCC-chhhhcCCC----ceeEEEecCCCcccccc
Q 036345 534 KEKLYHLMLMINLFST-----FPVSIRYAKKLRSLFLVANGSFKVLSPV-LPGLFDQLT----FLRTLKITGESAGVEKS 603 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~l~----~Lr~L~L~~~~~~~~~~ 603 (954)
.++++.++++++.+.. ++..+..+++|++|++++|. +... ....+..++ .|++|+|++|.+.. ..
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~-~~ 101 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AG 101 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC----CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG-GG
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc----CChHHHHHHHHHHhhCCCceeEEEccCCCCCH-HH
Confidence 4578889999888763 45667778999999999886 3221 122234455 69999999984321 12
Q ss_pred ccccchhhhccCcCceeeccCcccccc-cccc-----cCCCCccEEeccccCCCc----cccccccCCCCCCEEeccCcc
Q 036345 604 IREIPKEIEKLKHLRFLKLSQVDLEEL-PETC-----CELVNLQTLDIEACGSLK----RLPQGIGKLVNLRHLMISHNV 673 (954)
Q Consensus 604 l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i-----~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~l~~~~ 673 (954)
+..+|..+.++++|++|+|++|.+... +..+ ..+.+|++|++++|.... .++..+..+++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 235678888999999999999987632 2222 235679999999987332 245667778899999999886
Q ss_pred ccccCCCCCC-----CCCCCCccCceEecCCccC----cccccccccCCceeEEcCCCCCCCccccc-----cccCccCC
Q 036345 674 YLDYMPKGIE-----RLTCLRTLRELVVSRKGCN----LGGLRHLNHLRGSFRIRGLGNVTHVDEAK-----NSELDKKK 739 (954)
Q Consensus 674 ~~~~~p~~i~-----~L~~L~~L~~~~~~~~~~~----l~~l~~L~~L~~~l~i~~l~~~~~~~~~~-----~~~l~~~~ 739 (954)
.....+..+. .+++|++|++..+...... ...+..+..|+ .+.+.+.. +.... ......++
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~----l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR-ELALGSNK----LGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC-EEECCSSB----CHHHHHHHHHHHHTSTTC
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc-EEeccCCc----CChHHHHHHHHHHhcCCC
Confidence 4322121121 2446777765444332111 11122233333 44443321 11111 11223578
Q ss_pred CCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhc-----ccCccEEEEeCcCCCCc
Q 036345 740 NLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMS-----LCKLKVLLLSFCIKCEI 814 (954)
Q Consensus 740 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~-----l~~L~~L~L~~c~~~~~ 814 (954)
+|+.|++++|.... .....+...+..+++|++|++++|.+....+..+.. .++|+.|+|++|.+...
T Consensus 257 ~L~~L~L~~n~l~~--------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 257 RLRTLWIWECGITA--------KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp CCCEEECTTSCCCH--------HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred CceEEECcCCCCCH--------HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 99999999987652 222335555666889999999999765422222332 36999999999987643
Q ss_pred ----C-CCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccc-ccccccccc
Q 036345 815 ----M-PPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWD-FGEEDNITV 888 (954)
Q Consensus 815 ----l-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~-~~~~~~~~~ 888 (954)
+ ..+..+++|+.|+|++|. +...+...+... .....++|++|+++++. +.... ...+..+..
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~----------l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQG----------LGQPGSVLRVLWLADCD-VSDSSCSSLAATLLA 396 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHH----------HTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHH----------HcCCCCceEEEECCCCC-CChhhHHHHHHHHHh
Confidence 2 225678999999999996 443322111100 00136799999999875 33100 011233557
Q ss_pred ccccceecccccccCc---------CCCCCCCCCCCcceEEEecCc
Q 036345 889 MPQLNSLKIENCSKLK---------SLPDQLLRSTTLENLEIKKCP 925 (954)
Q Consensus 889 ~p~L~~L~l~~c~~l~---------~lp~~~~~l~~L~~L~l~~c~ 925 (954)
+++|++|++++|+ +. .+|. ..+.|+.|++.++.
T Consensus 397 ~~~L~~L~l~~N~-i~~~~~~~l~~~l~~---~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 397 NHSLRELDLSNNC-LGDAGILQLVESVRQ---PGCLLEQLVLYDIY 438 (461)
T ss_dssp CCCCCEEECCSSS-CCHHHHHHHHHHHTS---TTCCCCEEECTTCC
T ss_pred CCCccEEECCCCC-CCHHHHHHHHHHhcc---CCcchhheeecccc
Confidence 8999999999995 43 2443 23467777777665
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.4e-15 Score=161.16 Aligned_cols=212 Identities=22% Similarity=0.218 Sum_probs=128.5
Q ss_pred cccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhhccCcCceeeccC
Q 036345 546 LFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQ 624 (954)
Q Consensus 546 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~ 624 (954)
.+..+|..+. ++|++|++++|. +....+..|.+++.|++|++++| .+..++. .+.++++|++|+|++
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~----l~~~~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRC------EIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC----CCEECTTTTTTCTTCSEEECTTC------CCCEECTTTTTTCTTCCEEECTT
T ss_pred CccccCCCCC--CCccEEECCCCc----ccccCHhHhccccCCcEEECCCC------cCCccCHHHccCCcCCCEEECCC
Confidence 3444555442 467777777775 44434445677777888888777 5555543 577777888888888
Q ss_pred ccccccc-ccccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccc-cCCCCCCCCCCCCccCceEecCCcc
Q 036345 625 VDLEELP-ETCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLD-YMPKGIERLTCLRTLRELVVSRKGC 701 (954)
Q Consensus 625 ~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~ 701 (954)
|.+..++ ..+..+++|++|++++|. +..++. .+..+++|++|++++|.... .+|..++.+++|++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L---------- 154 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL---------- 154 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE----------
T ss_pred CccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE----------
Confidence 7777655 457777888888887776 444443 57777778888877774322 134444444444444
Q ss_pred CcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCC-EE
Q 036345 702 NLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIE-VL 780 (954)
Q Consensus 702 ~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L 780 (954)
++++|....... ..+..+..++.|. +|
T Consensus 155 -------------------------------------------~Ls~N~l~~~~~---------~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 155 -------------------------------------------DLSSNKIQSIYC---------TDLRVLHQMPLLNLSL 182 (276)
T ss_dssp -------------------------------------------ECCSSCCCEECG---------GGGHHHHTCTTCCEEE
T ss_pred -------------------------------------------ECCCCCCCcCCH---------HHhhhhhhccccceee
Confidence 333332221100 0001111222232 56
Q ss_pred EEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC-CCCCCCCceEeecCCC
Q 036345 781 KIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP-LGKLPSLEVLSIWNMN 833 (954)
Q Consensus 781 ~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~-l~~l~~L~~L~L~~~~ 833 (954)
++++|.+.. +|.......+|+.|+|++|.+....+. ++.+++|+.|+|++|+
T Consensus 183 ~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 183 DLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ecCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 666666665 555554555788888888876655444 5778888888888877
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.2e-15 Score=164.28 Aligned_cols=197 Identities=18% Similarity=0.227 Sum_probs=126.5
Q ss_pred cccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETC 634 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i 634 (954)
..+++|++|.++++. +.. ++ .+..+++|++|++++| .+..++. +.++++|++|+|++|.+..+| .+
T Consensus 38 ~~l~~L~~L~l~~~~----i~~-l~-~~~~l~~L~~L~L~~n------~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~ 103 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG----VTT-IE-GVQYLNNLIGLELKDN------QITDLAP-LKNLTKITELELSGNPLKNVS-AI 103 (308)
T ss_dssp HHHHTCCEEECTTSC----CCC-CT-TGGGCTTCCEEECCSS------CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG
T ss_pred HHcCCcCEEEeeCCC----ccC-ch-hhhccCCCCEEEccCC------cCCCChh-HccCCCCCEEEccCCcCCCch-hh
Confidence 345666666666664 222 22 2556666666666666 5555555 666666666666666666654 46
Q ss_pred cCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCc
Q 036345 635 CELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRG 714 (954)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~ 714 (954)
..+++|++|++++|. +..+|. +..+++|++|++++|.. ..+|.
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~---------------------------------- 146 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP---------------------------------- 146 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG----------------------------------
T ss_pred cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc----------------------------------
Confidence 666666666666665 555553 66666666666666532 22221
Q ss_pred eeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcc
Q 036345 715 SFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSW 794 (954)
Q Consensus 715 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~ 794 (954)
+..+++|+.|+++.|..... ..+..+++|++|++++|.+.. +|.
T Consensus 147 --------------------l~~l~~L~~L~l~~n~l~~~--------------~~l~~l~~L~~L~l~~n~l~~-~~~- 190 (308)
T 1h6u_A 147 --------------------LAGLTNLQYLSIGNAQVSDL--------------TPLANLSKLTTLKADDNKISD-ISP- 190 (308)
T ss_dssp --------------------GGGCTTCCEEECCSSCCCCC--------------GGGTTCTTCCEEECCSSCCCC-CGG-
T ss_pred --------------------ccCCCCccEEEccCCcCCCC--------------hhhcCCCCCCEEECCCCccCc-Chh-
Confidence 22345566666666654321 115667888999999888877 554
Q ss_pred hhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCc
Q 036345 795 IMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGD 840 (954)
Q Consensus 795 ~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 840 (954)
+..+++|+.|+|++|.+.... ++..+++|+.|++++|+ +...|.
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence 678899999999999876544 58899999999999988 554443
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=2.6e-15 Score=155.33 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=47.4
Q ss_pred ceeEEEecCCCccccccccccch-hhhccCcCceeeccCcc-cccccc-cccCCCCccEEeccccCCCccccc-cccCCC
Q 036345 587 FLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVD-LEELPE-TCCELVNLQTLDIEACGSLKRLPQ-GIGKLV 662 (954)
Q Consensus 587 ~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~ 662 (954)
.|++|++++| .+..+|. .++++++|++|++++|. ++.+|. .+..+++|++|++++|+.+..+|. .+..++
T Consensus 32 ~l~~L~l~~n------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIET------HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESC------CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCC------cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 5666666666 4555544 45666666666666665 665554 456666666666666223555553 355666
Q ss_pred CCCEEeccCcc
Q 036345 663 NLRHLMISHNV 673 (954)
Q Consensus 663 ~L~~L~l~~~~ 673 (954)
+|++|++++|.
T Consensus 106 ~L~~L~l~~n~ 116 (239)
T 2xwt_C 106 LLKFLGIFNTG 116 (239)
T ss_dssp TCCEEEEEEEC
T ss_pred CCCEEeCCCCC
Confidence 66666666653
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=5.7e-15 Score=152.81 Aligned_cols=207 Identities=20% Similarity=0.258 Sum_probs=133.0
Q ss_pred ccccchhhhccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccccCCCC
Q 036345 604 IREIPKEIEKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDYMPKG 681 (954)
Q Consensus 604 l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~ 681 (954)
+..+|. +. .+|++|++++|.++.+|. .+..+++|++|++++|..+..+|. .+..+++|++|++++|+.+..+|..
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 455565 33 277788888888777765 577777888888877754555654 4667777777777762222222210
Q ss_pred CCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhh
Q 036345 682 IERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEA 761 (954)
Q Consensus 682 i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~ 761 (954)
T Consensus 100 -------------------------------------------------------------------------------- 99 (239)
T 2xwt_C 100 -------------------------------------------------------------------------------- 99 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCcc---EEEEeCc-CCCCcCCC-CCCCCCCc-eEeecCCCCc
Q 036345 762 AKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLK---VLLLSFC-IKCEIMPP-LGKLPSLE-VLSIWNMNSV 835 (954)
Q Consensus 762 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~---~L~L~~c-~~~~~l~~-l~~l~~L~-~L~L~~~~~l 835 (954)
.+..+++|++|++++|.+.. +|. +..+++|+ .|++++| .+....+. ++.+++|+ .|++++|. +
T Consensus 100 --------~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l 168 (239)
T 2xwt_C 100 --------ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-F 168 (239)
T ss_dssp --------SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-C
T ss_pred --------HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-C
Confidence 11223455566666666555 665 55566666 8888887 44443332 77788888 88888876 5
Q ss_pred eEeCcccccCCCCCCCCcCCcccccCcccceeeccccccccccccccccccccc-cccceecccccccCcCCCCCCCCCC
Q 036345 836 KTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVM-PQLNSLKIENCSKLKSLPDQLLRST 914 (954)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~l~~c~~l~~lp~~~~~l~ 914 (954)
..++...+. . ++|+.|++.+++.+..+.. ..+..+ ++|+.|++++| .++.+|.. .++
T Consensus 169 ~~i~~~~~~---------------~-~~L~~L~L~~n~~l~~i~~---~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~ 226 (239)
T 2xwt_C 169 TSVQGYAFN---------------G-TKLDAVYLNKNKYLTVIDK---DAFGGVYSGPSLLDVSQT-SVTALPSK--GLE 226 (239)
T ss_dssp CEECTTTTT---------------T-CEEEEEECTTCTTCCEECT---TTTTTCSBCCSEEECTTC-CCCCCCCT--TCT
T ss_pred cccCHhhcC---------------C-CCCCEEEcCCCCCcccCCH---HHhhccccCCcEEECCCC-ccccCChh--Hhc
Confidence 566654321 2 6788888887755555532 234466 88999999887 47888874 577
Q ss_pred CcceEEEecCcc
Q 036345 915 TLENLEIKKCPI 926 (954)
Q Consensus 915 ~L~~L~l~~c~~ 926 (954)
+|+.|++.+|..
T Consensus 227 ~L~~L~l~~~~~ 238 (239)
T 2xwt_C 227 HLKELIARNTWT 238 (239)
T ss_dssp TCSEEECTTC--
T ss_pred cCceeeccCccC
Confidence 899999888764
No 81
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=3.6e-14 Score=156.25 Aligned_cols=294 Identities=12% Similarity=0.082 Sum_probs=176.3
Q ss_pred ccCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC------C
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF------D 242 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~------~ 242 (954)
..+..|+||+.++++|.+++... +++.|+|++|+|||||++++++. . . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCC
Confidence 34567999999999999988631 48999999999999999999874 2 1 6777765432 5
Q ss_pred HHHHHHHHHHHhhc----------------CCC--CcccHHHHHHHHHHHhcC-ceeEEEecCCCCCCc-------cChh
Q 036345 243 EFRVARAIIEALEG----------------SAS--NLGELQSLLQRIQTSIAG-KKFLLVLDDMWTDDY-------SKWE 296 (954)
Q Consensus 243 ~~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~-------~~~~ 296 (954)
...++..+.+.+.. ... ...+...+...+.+..+. ++++|||||++.-+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 56666666655432 000 113455666666665543 389999999965321 1122
Q ss_pred hHHhhhcCCCCCcEEEEecCchhH-Hhh---------h-cC-cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 036345 297 PFNNCLMNGLRGSKILVTTRKKTV-AQM---------M-ES-TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIG 364 (954)
Q Consensus 297 ~l~~~l~~~~~gs~iiiTtr~~~v-~~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 364 (954)
.+...+.. .++.++|+|++.... ... + +. ...+++.+|+.+|+.+++......... ... .+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHH
Confidence 23332222 257889999887653 211 1 11 247999999999999999875422111 111 3456
Q ss_pred HHHHHhcCCChHHHHHHHhhhcCCCCHHHHHH-HHhhhhhcccccccchhhHH-HhhhcCCChhhhhHHhHhcCCCCCcc
Q 036345 365 RKIVSRCKGLPLAAKTIGSLLRFKKTREEWQR-ILDSEMWKLKEFEKGLLAPL-LLSYNDLPTMVKRCFSYCAVFPKDYN 442 (954)
Q Consensus 365 ~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~cf~~~~~fp~~~~ 442 (954)
.+|++.|+|+|+++..++..+....+...+.. ..+... ..+...+ .+.+ . ++..+..+..+|. + .
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK-------GLIMGELEELRR-R-SPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-C
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH-------HHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-C
Confidence 78999999999999998875432122222211 111100 0011111 1222 2 7888999998887 2 2
Q ss_pred cchHHHHHHHHHhcccCCCCCchHHHHHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHHH
Q 036345 443 IEKDELIKVWMAQGYIGPKENEEMEIIGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDFA 507 (954)
Q Consensus 443 i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl~ 507 (954)
++...+.....+. .. +.+ ......+++.|.+.+++.... + .+...|.+++++.
T Consensus 296 ~~~~~l~~~~~~~-~~----~~~-~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~ 348 (350)
T 2qen_A 296 NRWSLIRDYLAVK-GT----KIP-EPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVL 348 (350)
T ss_dssp CSHHHHHHHHHHT-TC----CCC-HHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHH-hC----CCC-HHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHH
Confidence 3444444433221 10 111 234668899999999998652 2 2334467777654
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=1.2e-17 Score=198.56 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=83.7
Q ss_pred CCceEEEEEEeccccC-Cccccc-ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhh
Q 036345 534 KEKLYHLMLMINLFST-FPVSIR-YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 611 (954)
..++++|+++++.+.. .+..+. .+++|++|.+.+|..+.. ..++..+.++++|++|+|++|.+. +.....++...
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~i~-~~~~~~l~~~~ 180 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST--DGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFP 180 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH--HHHHHHHHHCTTCCEEECTTCEEE-CCCGGGGGGSC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH--HHHHHHHHhCCCCCEEeCcCCccC-CcchHHHHHHh
Confidence 4467778887776553 222332 577888888887742111 113444567888888888887321 11122233334
Q ss_pred hccCcCceeeccCcc--cc--cccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCc
Q 036345 612 EKLKHLRFLKLSQVD--LE--ELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHN 672 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 672 (954)
..+++|++|++++|. +. .++..+..+++|++|++++|..+..+|..+..+++|++|+++.+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 466788888888775 22 33444456788888888887656667777777788888876554
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=9.1e-15 Score=154.26 Aligned_cols=175 Identities=25% Similarity=0.342 Sum_probs=99.4
Q ss_pred CceeEEEecCCCccccccccccch-hhhccCcCceeeccCcccccccccc-cCCCCccEEeccccCCCcccccc-ccCCC
Q 036345 586 TFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLEELPETC-CELVNLQTLDIEACGSLKRLPQG-IGKLV 662 (954)
Q Consensus 586 ~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 662 (954)
+.|+.|++++| .+..+|. .+.++++|++|+|++|.++.+|..+ ..+++|++|++++|. +..+|.. +..++
T Consensus 37 ~~l~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSN------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLV 109 (270)
T ss_dssp TTCSEEECCSS------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCS
T ss_pred CCCCEEECcCC------CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHccccc
Confidence 35666666666 4455543 4666666666666666666665543 556666666666665 4444432 45666
Q ss_pred CCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCc
Q 036345 663 NLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLV 742 (954)
Q Consensus 663 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 742 (954)
+|++|++++|......|..++.+++|++|
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------------------------------------------------- 138 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYL--------------------------------------------------- 138 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEE---------------------------------------------------
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEE---------------------------------------------------
Confidence 66666666653322111222333333322
Q ss_pred eEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCC-cchhcccCccEEEEeCcCCCCcCCC-CCC
Q 036345 743 CLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFP-SWIMSLCKLKVLLLSFCIKCEIMPP-LGK 820 (954)
Q Consensus 743 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~c~~~~~l~~-l~~ 820 (954)
++++|..... ....+..+++|++|++++|.+.. +| ..+..+++|+.|+|++|.+....+. +..
T Consensus 139 --~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 139 --SLGYNELQSL------------PKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp --ECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --ECCCCcCCcc------------CHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 2222221110 01123445667777777776666 44 3466788888888888877654443 677
Q ss_pred CCCCceEeecCCC
Q 036345 821 LPSLEVLSIWNMN 833 (954)
Q Consensus 821 l~~L~~L~L~~~~ 833 (954)
+++|+.|+|++|+
T Consensus 204 l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 204 LEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEecCCC
Confidence 8888888888887
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=7.3e-15 Score=156.35 Aligned_cols=197 Identities=20% Similarity=0.154 Sum_probs=108.6
Q ss_pred cccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcCceeeccCccccccccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHLRFLKLSQVDLEELPET 633 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~ 633 (954)
..+++++++++.++. +.. +|..+ .+.|++|+|++| .+..+ |..+.++++|++|+|++|.++.+|..
T Consensus 7 ~~l~~l~~l~~~~~~----l~~-ip~~~--~~~l~~L~L~~N------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN----LTA-LPPDL--PKDTTILHLSEN------LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73 (290)
T ss_dssp ECSTTCCEEECTTSC----CSS-CCSCC--CTTCCEEECTTS------CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC
T ss_pred cccCCccEEECCCCC----CCc-CCCCC--CCCCCEEEcCCC------cCCccCHHHhhcCCCCCEEECCCCccCcccCC
Confidence 445556666665554 222 22211 245666666666 44444 34466666666666666666666544
Q ss_pred ccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCC-CCCCCCCCCCccCceEecCCccCcccccccccC
Q 036345 634 CCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMP-KGIERLTCLRTLRELVVSRKGCNLGGLRHLNHL 712 (954)
Q Consensus 634 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L 712 (954)
+.+++|++|++++|. +..+|..+..+++|++|++++|.. ..+| ..+..+++|+.|+
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~-------------------- 130 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELY-------------------- 130 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEE--------------------
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEE--------------------
Confidence 566666666666665 556666666666666666666643 2332 2334444333332
Q ss_pred CceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCC
Q 036345 713 RGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFP 792 (954)
Q Consensus 713 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp 792 (954)
+++|.+... ....+..+++|+.|++++|.+.. +|
T Consensus 131 ---------------------------------L~~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~-l~ 164 (290)
T 1p9a_G 131 ---------------------------------LKGNELKTL------------PPGLLTPTPKLEKLSLANNNLTE-LP 164 (290)
T ss_dssp ---------------------------------CTTSCCCCC------------CTTTTTTCTTCCEEECTTSCCSC-CC
T ss_pred ---------------------------------CCCCCCCcc------------ChhhcccccCCCEEECCCCcCCc-cC
Confidence 111111100 01112344566666666666655 55
Q ss_pred cc-hhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCC
Q 036345 793 SW-IMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 793 ~~-~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
.. +..+++|+.|+|++|.+....+.+..+++|+.|.|.+|+
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 43 346777777777777766555556667777888877776
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=8.3e-15 Score=154.68 Aligned_cols=81 Identities=28% Similarity=0.492 Sum_probs=42.6
Q ss_pred cCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccCCCCccEEeccccCCCcccccc-ccCC
Q 036345 583 DQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQG-IGKL 661 (954)
Q Consensus 583 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l 661 (954)
..++.|+.|+++++ .+..++ .++.+++|++|++++|.+..++ .++.+++|++|++++|. +..+|.. +..+
T Consensus 38 ~~l~~L~~L~l~~~------~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l 108 (272)
T 3rfs_A 38 NELNSIDQIIANNS------DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKL 108 (272)
T ss_dssp HHHTTCCEEECTTS------CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred ccccceeeeeeCCC------Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCC
Confidence 34455555555555 333333 2555555555555555555543 45555555666665554 3333332 4555
Q ss_pred CCCCEEeccCc
Q 036345 662 VNLRHLMISHN 672 (954)
Q Consensus 662 ~~L~~L~l~~~ 672 (954)
++|++|++++|
T Consensus 109 ~~L~~L~L~~n 119 (272)
T 3rfs_A 109 TNLKELVLVEN 119 (272)
T ss_dssp TTCCEEECTTS
T ss_pred cCCCEEECCCC
Confidence 55555555555
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.7e-14 Score=153.40 Aligned_cols=198 Identities=23% Similarity=0.243 Sum_probs=154.0
Q ss_pred hcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccc-cccccCCCCccEEeccccCCCccccccccC
Q 036345 582 FDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLPQGIGK 660 (954)
Q Consensus 582 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 660 (954)
+.+++.|+.++++++ .+..+|..+. ++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|.. ..
T Consensus 6 ~~~l~~l~~l~~~~~------~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR------NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GT 75 (290)
T ss_dssp EECSTTCCEEECTTS------CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SC
T ss_pred ccccCCccEEECCCC------CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CC
Confidence 577889999999999 7888987765 7899999999999976 4679999999999999998 7777764 88
Q ss_pred CCCCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCC
Q 036345 661 LVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKN 740 (954)
Q Consensus 661 l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~ 740 (954)
+++|++|++++|. +..+|..+..+++|+.|
T Consensus 76 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L------------------------------------------------- 105 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVL------------------------------------------------- 105 (290)
T ss_dssp CTTCCEEECCSSC-CSSCCCCTTTCTTCCEE-------------------------------------------------
T ss_pred CCcCCEEECCCCc-CCcCchhhccCCCCCEE-------------------------------------------------
Confidence 9999999999985 35666555554444444
Q ss_pred CceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCc-chhcccCccEEEEeCcCCCCcCCC-C
Q 036345 741 LVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPS-WIMSLCKLKVLLLSFCIKCEIMPP-L 818 (954)
Q Consensus 741 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~c~~~~~l~~-l 818 (954)
++++|.+... ....+..+++|++|++++|.+.. +|. .+..+++|+.|+|++|.+....+. +
T Consensus 106 ----~l~~N~l~~l------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 106 ----DVSFNRLTSL------------PLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp ----ECCSSCCCCC------------CSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred ----ECCCCcCccc------------CHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCccCHHHh
Confidence 4443333211 11335667899999999999887 554 456899999999999988765544 6
Q ss_pred CCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc
Q 036345 819 GKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 819 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
..+++|+.|+|++|. +..+|..++ ..++|+.|.+.+.+
T Consensus 169 ~~l~~L~~L~L~~N~-l~~ip~~~~----------------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 169 NGLENLDTLLLQENS-LYTIPKGFF----------------GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTT----------------TTCCCSEEECCSCC
T ss_pred cCcCCCCEEECCCCc-CCccChhhc----------------ccccCCeEEeCCCC
Confidence 789999999999998 777776543 45678999988765
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=5.4e-15 Score=156.73 Aligned_cols=201 Identities=18% Similarity=0.169 Sum_probs=125.2
Q ss_pred CceeEEEecCCCccccccccccch-hhhccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCcccc-ccccCCC
Q 036345 586 TFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLP-QGIGKLV 662 (954)
Q Consensus 586 ~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~ 662 (954)
+.|++|++++| .+..++. .+.++++|++|++++|.+..++. .+..+++|++|++++|. +..++ ..+..++
T Consensus 28 ~~l~~L~ls~n------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFN------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTC------CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCT
T ss_pred CCccEEECCCC------cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCc
Confidence 46788888887 5666654 57778888888888887776654 57778888888888877 44444 5577778
Q ss_pred CCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCc
Q 036345 663 NLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLV 742 (954)
Q Consensus 663 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 742 (954)
+|++|++++|......+..++. +++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~ 127 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGH-----------------------------------------------------LKTLK 127 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTT-----------------------------------------------------CTTCC
T ss_pred cccEEECCCCCccccCchhccc-----------------------------------------------------CCCCC
Confidence 8888887776432211112222 33444
Q ss_pred eEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCcc----EEEEeCcCCCCcCCCC
Q 036345 743 CLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLK----VLLLSFCIKCEIMPPL 818 (954)
Q Consensus 743 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~----~L~L~~c~~~~~l~~l 818 (954)
.|++++|..... .++..+..+++|++|++++|.+....+..+..+++|+ .|++++|.+....+..
T Consensus 128 ~L~l~~n~l~~~-----------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~ 196 (276)
T 2z62_A 128 ELNVAHNLIQSF-----------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (276)
T ss_dssp EEECCSSCCCCC-----------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS
T ss_pred EEECcCCcccee-----------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc
Confidence 555554443211 0123445567888888888877763344566666666 7788888776655555
Q ss_pred CCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc
Q 036345 819 GKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 819 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
...++|+.|++++|. +..++...+. .+++|+.|++.+.+
T Consensus 197 ~~~~~L~~L~L~~n~-l~~~~~~~~~---------------~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 197 FKEIRLKELALDTNQ-LKSVPDGIFD---------------RLTSLQKIWLHTNP 235 (276)
T ss_dssp SCSCCEEEEECCSSC-CSCCCTTTTT---------------TCCSCCEEECCSSC
T ss_pred cCCCcccEEECCCCc-eeecCHhHhc---------------ccccccEEEccCCc
Confidence 555678888888777 5554443221 45666666666543
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.4e-14 Score=151.03 Aligned_cols=195 Identities=23% Similarity=0.265 Sum_probs=144.2
Q ss_pred ceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCccccccc-cCCCCC
Q 036345 587 FLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQGI-GKLVNL 664 (954)
Q Consensus 587 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L 664 (954)
.++.++++++ .+..+|..+. .+|++|+|++|.+..+|. .+..+++|++|++++|. +..+|..+ ..+++|
T Consensus 17 ~~~~l~~~~~------~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSK------KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTS------CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTC
T ss_pred CCCEEEccCC------CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCC
Confidence 4678888888 7777887654 679999999999988875 68899999999999987 77777664 779999
Q ss_pred CEEeccCccccccCCC-CCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCce
Q 036345 665 RHLMISHNVYLDYMPK-GIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVC 743 (954)
Q Consensus 665 ~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 743 (954)
++|++++|.. ..+|. .+..++ +|+.
T Consensus 88 ~~L~l~~n~l-~~~~~~~~~~l~-----------------------------------------------------~L~~ 113 (270)
T 2o6q_A 88 ETLWVTDNKL-QALPIGVFDQLV-----------------------------------------------------NLAE 113 (270)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCS-----------------------------------------------------SCCE
T ss_pred CEEECCCCcC-CcCCHhHccccc-----------------------------------------------------CCCE
Confidence 9999988753 33332 233333 3444
Q ss_pred EEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCc-chhcccCccEEEEeCcCCCCcCCC-CCCC
Q 036345 744 LELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPS-WIMSLCKLKVLLLSFCIKCEIMPP-LGKL 821 (954)
Q Consensus 744 L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~c~~~~~l~~-l~~l 821 (954)
|++++|..... ....+..+++|++|++++|.+.. +|. .+..+++|+.|+|++|.+....+. +..+
T Consensus 114 L~l~~n~l~~~------------~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 114 LRLDRNQLKSL------------PPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp EECCSSCCCCC------------CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred EECCCCccCee------------CHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 44444433221 12235677899999999999887 655 467899999999999987766554 7889
Q ss_pred CCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccccc
Q 036345 822 PSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 822 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
++|+.|+|++|. +..++...+ ..+++|+.|.+.+.+
T Consensus 181 ~~L~~L~L~~N~-l~~~~~~~~---------------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNNQ-LKRVPEGAF---------------DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSC-CSCCCTTTT---------------TTCTTCCEEECCSSC
T ss_pred CCcCEEECCCCc-CCcCCHHHh---------------ccccCCCEEEecCCC
Confidence 999999999997 666655432 257889999998765
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=3.4e-16 Score=171.43 Aligned_cols=245 Identities=18% Similarity=0.153 Sum_probs=151.1
Q ss_pred cceEEEeeccCCccccCCCchhhhcCC--CceeEEEecCCCccccccccccchhhhccCcCceeeccCccccc--ccccc
Q 036345 559 KLRSLFLVANGSFKVLSPVLPGLFDQL--TFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEE--LPETC 634 (954)
Q Consensus 559 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i 634 (954)
.++.++++++. + .+..+..+ +.+++|+++++ .+...+..+.++++|++|+|++|.+.. +|..+
T Consensus 48 ~~~~l~l~~~~----~---~~~~~~~~~~~~l~~L~l~~n------~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 48 LWQTLDLTGKN----L---HPDVTGRLLSQGVIAFRCPRS------FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp TSSEEECTTCB----C---CHHHHHHHHHTTCSEEECTTC------EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred hheeecccccc----C---CHHHHHhhhhccceEEEcCCc------cccccchhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence 46677777664 1 14445555 67788888777 555555556677888888888877662 67777
Q ss_pred cCCCCccEEeccccCCCccccccccCCCCCCEEeccCcccccc--CCCCCCCCCCCCccCceEecCCccCcccccccccC
Q 036345 635 CELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDY--MPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHL 712 (954)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L 712 (954)
..+++|++|++++|......|..+..+++|++|++++|..+.. +|.
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-------------------------------- 162 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-------------------------------- 162 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH--------------------------------
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH--------------------------------
Confidence 7788888888887764445666677777888888777632221 111
Q ss_pred CceeEEcCCCCCCCccccccccCccCCCCceEEEEec-CCcccccchhhhhhHHHHhhcCCCCC-CCCEEEEeeec--CC
Q 036345 713 RGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFD-REEEEATDENEAAKHEATSEALRPNP-NIEVLKIFQYK--GK 788 (954)
Q Consensus 713 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~ 788 (954)
.+..+++|+.|++++| .... ..+...+..++ +|++|++++|. +.
T Consensus 163 ---------------------~~~~~~~L~~L~l~~~~~l~~-----------~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 163 ---------------------LLSSCSRLDELNLSWCFDFTE-----------KHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp ---------------------HHHHCTTCCEEECCCCTTCCH-----------HHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred ---------------------HHhcCCCCCEEcCCCCCCcCh-----------HHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 1223456667777666 4321 11233344566 88888888873 32
Q ss_pred -CCCCcchhcccCccEEEEeCcCC-C-CcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccc
Q 036345 789 -TVFPSWIMSLCKLKVLLLSFCIK-C-EIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLK 865 (954)
Q Consensus 789 -~~lp~~~~~l~~L~~L~L~~c~~-~-~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~ 865 (954)
..+|..+..+++|+.|+|++|.. . ..++.++.+++|+.|++++|..+. +..+.. ...+++|+
T Consensus 211 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~-------------l~~~~~L~ 275 (336)
T 2ast_B 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLLE-------------LGEIPTLK 275 (336)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGGG-------------GGGCTTCC
T ss_pred HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHHHH-------------HhcCCCCC
Confidence 22566666788888888888873 3 335567788888888888886221 111111 12578888
Q ss_pred eeeccccccccccccccccccccc-cccceecccccccCc
Q 036345 866 ELAFWGLYEWEEWDFGEEDNITVM-PQLNSLKIENCSKLK 904 (954)
Q Consensus 866 ~L~l~~~~~l~~~~~~~~~~~~~~-p~L~~L~l~~c~~l~ 904 (954)
.|++.+| +... .+..+ .+|..|++++|. ++
T Consensus 276 ~L~l~~~--i~~~------~~~~l~~~l~~L~l~~n~-l~ 306 (336)
T 2ast_B 276 TLQVFGI--VPDG------TLQLLKEALPHLQINCSH-FT 306 (336)
T ss_dssp EEECTTS--SCTT------CHHHHHHHSTTSEESCCC-SC
T ss_pred EEeccCc--cCHH------HHHHHHhhCcceEEeccc-Cc
Confidence 8888877 2221 12223 346666776554 44
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=2.2e-13 Score=150.30 Aligned_cols=292 Identities=11% Similarity=0.089 Sum_probs=172.1
Q ss_pred cCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCC-----CCHH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDP-----FDEF 244 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~ 244 (954)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 742 48999999999999999999874 221 2578887642 3455
Q ss_pred HHHHHHHHHhhc-------------CC-----C-----------CcccHHHHHHHHHHHhcCceeEEEecCCCCCCc---
Q 036345 245 RVARAIIEALEG-------------SA-----S-----------NLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY--- 292 (954)
Q Consensus 245 ~~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--- 292 (954)
..+..+.+.+.. .. + .......+...+.+... ++++|||||+++.+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555554421 00 0 01234445554544322 489999999965321
Q ss_pred cChhhHHhhhcCCCCCcEEEEecCchhHHhh----------h-cC-cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhH
Q 036345 293 SKWEPFNNCLMNGLRGSKILVTTRKKTVAQM----------M-ES-TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQL 360 (954)
Q Consensus 293 ~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 360 (954)
..|..+...+.....+.++|+|++....... + +. ...+++.+|+.+++.+++...+..... . .+..
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~-~~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-D-FKDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-C-CCCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-C-CCcH
Confidence 2333332323222246789999997653221 1 11 257899999999999999875421111 1 1111
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhhhhhcccccccchhhHHH-hhhc--CCChhhhhHHhHhcCC
Q 036345 361 EEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQRILDSEMWKLKEFEKGLLAPLL-LSYN--DLPTMVKRCFSYCAVF 437 (954)
Q Consensus 361 ~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~~~f 437 (954)
..|++.|+|+|+++..++..+....+...|..-.-... ...+...+. +.+. .+|+..+..+..+|.
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA------KKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH------HHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 67999999999999999877643333333322110000 000111111 2221 678899999999998
Q ss_pred CCCcccchHHHHHHHH-HhcccCCCCCchHHHHHHHHHHHHHhcCCceeeeccCCCcEEEEeechhHHHH
Q 036345 438 PKDYNIEKDELIKVWM-AQGYIGPKENEEMEIIGQEYFDYLATRSFFQEFEKDEEGFVIRCKMHDIVHDF 506 (954)
Q Consensus 438 p~~~~i~~~~li~~w~-a~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdli~dl 506 (954)
+. +...+....- ..|. . . .......+++.|.+.+++.... +. +.-.|.++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~--~---~-~~~~~~~~L~~L~~~gli~~~~----~~--y~f~~~~~~~~ 355 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI--E---I-SDSEIYNYLTQLTKHSWIIKEG----EK--YCPSEPLISLA 355 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS--C---C-CHHHHHHHHHHHHHTTSEEESS----SC--EEESSHHHHHH
T ss_pred --CC--CHHHHHHHHHHhcCC--C---C-CHHHHHHHHHHHHhCCCEEecC----CE--EEecCHHHHHh
Confidence 22 3344332211 1121 0 1 1234567899999999997642 21 22357787765
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=6.1e-17 Score=180.92 Aligned_cols=253 Identities=15% Similarity=0.128 Sum_probs=156.6
Q ss_pred ccccCCcccccccCcceEEEeeccCCccccCCC----chhhhcCCCceeEEEecCCCcccc-----ccccccchhhhccC
Q 036345 545 NLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPV----LPGLFDQLTFLRTLKITGESAGVE-----KSIREIPKEIEKLK 615 (954)
Q Consensus 545 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~~~~-----~~l~~lp~~i~~L~ 615 (954)
..+..++..+..+++|++|++++|. +... ++..+..+++|++|+|++|....- ..+..+...+.+++
T Consensus 19 ~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 19 EDEKSVFAVLLEDDSVKEIVLSGNT----IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp HHHHTTSHHHHHCSCCCEEECTTSE----ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhcCCCccEEECCCCC----CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 3344466777888999999999886 3322 334467899999999998743210 01122223347889
Q ss_pred cCceeeccCccccc-----ccccccCCCCccEEeccccCCCc----cccccccCC---------CCCCEEeccCcccc-c
Q 036345 616 HLRFLKLSQVDLEE-----LPETCCELVNLQTLDIEACGSLK----RLPQGIGKL---------VNLRHLMISHNVYL-D 676 (954)
Q Consensus 616 ~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l---------~~L~~L~l~~~~~~-~ 676 (954)
+|++|+|++|.+.. +|..+..+++|++|+|++|.... .++..+..+ ++|++|++++|... .
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 99999999999875 78888999999999999987321 233344444 89999999988543 2
Q ss_pred cCC---CCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcc
Q 036345 677 YMP---KGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEE 753 (954)
Q Consensus 677 ~~p---~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 753 (954)
.+| ..+..+++|++|.+..+... . ..........+..+++|+.|+|++|.+..
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~-----~-------------------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIR-----P-------------------EGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCC-----H-------------------HHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCC-----H-------------------hHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 233 23334455555432211000 0 00000111134566778888888776531
Q ss_pred cccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCC----CCcchhc--ccCccEEEEeCcCCCC----cCCC-C-CCC
Q 036345 754 EATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTV----FPSWIMS--LCKLKVLLLSFCIKCE----IMPP-L-GKL 821 (954)
Q Consensus 754 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----lp~~~~~--l~~L~~L~L~~c~~~~----~l~~-l-~~l 821 (954)
.....++..+..+++|++|++++|.+... +|.++.. +++|+.|+|++|.+.. .+|. + .++
T Consensus 231 --------~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 231 --------LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp --------HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 11233455666777888888888776552 3444432 7778888888887665 2333 3 457
Q ss_pred CCCceEeecCCC
Q 036345 822 PSLEVLSIWNMN 833 (954)
Q Consensus 822 ~~L~~L~L~~~~ 833 (954)
|+|+.|++++|.
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 888888888776
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=1.6e-14 Score=155.33 Aligned_cols=139 Identities=21% Similarity=0.348 Sum_probs=114.5
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
..++++|++.++.+..++ .+..+++|++|++++|. +... +. +..+++|++|++++| .+..+| .+.+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~----i~~~-~~-~~~l~~L~~L~L~~n------~l~~~~-~~~~ 105 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ----ITDL-AP-LKNLTKITELELSGN------PLKNVS-AIAG 105 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC----CCCC-GG-GTTCCSCCEEECCSC------CCSCCG-GGTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc----CCCC-hh-HccCCCCCEEEccCC------cCCCch-hhcC
Confidence 457899999999888766 68899999999999986 4443 33 899999999999999 667775 5899
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCcc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTL 691 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 691 (954)
+++|++|++++|.+..+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.. ..++. +..+++|+.|
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV-SDLTP-LANLSKLTTL 178 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC-CCChh-hcCCCCCCEE
Confidence 9999999999999999875 9999999999999998 777776 88999999999999843 44443 4444444444
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=155.84 Aligned_cols=230 Identities=15% Similarity=0.100 Sum_probs=141.2
Q ss_pred CceEEEEEEeccccC--Cc--ccccccCcceEEEeeccCCccccCCCchhhh--cCCCceeEEEecCCCccccccccccc
Q 036345 535 EKLYHLMLMINLFST--FP--VSIRYAKKLRSLFLVANGSFKVLSPVLPGLF--DQLTFLRTLKITGESAGVEKSIREIP 608 (954)
Q Consensus 535 ~~lr~L~l~~~~~~~--~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~~~~~~~l~~lp 608 (954)
..++++.+....+.. +. .....+++|+.|++++|. +.+..|..+ ..++.|++|+|++|.+.. ....++
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~~~~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK----ITGTMPPLPLEATGLALSSLRLRNVSWAT--GRSWLA 137 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC----CBSCCCCCSSSCCCBCCSSCEEESCCCSS--TTSSHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE----eccchhhhhhhccCCCCCEEEeecccccc--hhhhhH
Confidence 345666666655432 11 122345678888888886 444455555 778888888888883321 000111
Q ss_pred -hhhhccCcCceeeccCccccccc-ccccCCCCccEEeccccCCCcc--cc--ccccCCCCCCEEeccCccccccCCCCC
Q 036345 609 -KEIEKLKHLRFLKLSQVDLEELP-ETCCELVNLQTLDIEACGSLKR--LP--QGIGKLVNLRHLMISHNVYLDYMPKGI 682 (954)
Q Consensus 609 -~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~l~~~~~~~~~p~~i 682 (954)
..+..+++|++|+|++|.+..+| ..++.+++|++|++++|..... +| ..+..+++|++|++++|.. +.+|...
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 216 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVC 216 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHH
T ss_pred HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHH
Confidence 23457888889999888888665 5678888899999988873321 33 2246788888888888743 2222110
Q ss_pred CCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhh
Q 036345 683 ERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAA 762 (954)
Q Consensus 683 ~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 762 (954)
. ..+..+++|+.|+|++|.+....+
T Consensus 217 ~-------------------------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p------ 241 (310)
T 4glp_A 217 A-------------------------------------------------ALAAAGVQPHSLDLSHNSLRATVN------ 241 (310)
T ss_dssp H-------------------------------------------------HHHHHTCCCSSEECTTSCCCCCCC------
T ss_pred H-------------------------------------------------HHHhcCCCCCEEECCCCCCCccch------
Confidence 0 001122344444444444332100
Q ss_pred hHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCC
Q 036345 763 KHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 763 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
.....+..+++|++|++++|.+.. +|.++. ++|+.|+|++|.+... |.+..+++|+.|+|++|+
T Consensus 242 ---~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 ---PSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---SCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred ---hhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 000112223678888888888775 787663 7899999998877643 557788999999998887
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=5.8e-14 Score=154.16 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=77.6
Q ss_pred CCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCC--CCCCCCCceEeecCCCCceEeCcccccCCCCCCCC
Q 036345 775 PNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPP--LGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTS 852 (954)
Q Consensus 775 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 852 (954)
..++.|++++|.+.. +|.......+|+.|.+.++.....+|. ++.+++|+.|+|++|. ++.+|..
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~----------- 220 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY----------- 220 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS-----------
T ss_pred hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh-----------
Confidence 468889999998877 777766777899999987766666664 7899999999999987 6666642
Q ss_pred cCCcccccCcccceeeccccccccccccccccccccccccceecccc
Q 036345 853 ATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIEN 899 (954)
Q Consensus 853 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~ 899 (954)
.|.+|+.|.+.++.+++.++. +..+++|+.+++.+
T Consensus 221 -------~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 -------GLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLTY 255 (350)
T ss_dssp -------SCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred -------hhccchHhhhccCCCcCcCCC-----chhCcChhhCcCCC
Confidence 577788888888777776652 34688888888865
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=6.7e-16 Score=169.07 Aligned_cols=222 Identities=17% Similarity=0.175 Sum_probs=161.7
Q ss_pred ceEEEEEEeccccCCccccccc--CcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccc--cchhh
Q 036345 536 KLYHLMLMINLFSTFPVSIRYA--KKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIRE--IPKEI 611 (954)
Q Consensus 536 ~lr~L~l~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~--lp~~i 611 (954)
.+++++++.+.+. +..+..+ ++++.|.+.++. +....+. +..+++|++|++++| .+.. +|..+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~----l~~~~~~-~~~~~~L~~L~L~~~------~l~~~~~~~~~ 114 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF----MDQPLAE-HFSPFRVQHMDLSNS------VIEVSTLHGIL 114 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE----ECSCCCS-CCCCBCCCEEECTTC------EECHHHHHHHH
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCcc----ccccchh-hccCCCCCEEEccCC------CcCHHHHHHHH
Confidence 4667888877665 5556666 899999999886 4444444 557999999999999 5543 77788
Q ss_pred hccCcCceeeccCcccc-cccccccCCCCccEEeccccCCCc--cccccccCCCCCCEEeccCcccccc--CCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLE-ELPETCCELVNLQTLDIEACGSLK--RLPQGIGKLVNLRHLMISHNVYLDY--MPKGIERLT 686 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~i~~L~ 686 (954)
.++++|++|+|++|.+. ..|..++.+++|++|++++|..+. .+|..+..+++|++|++++|..+.. +|..+
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---- 190 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---- 190 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH----
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH----
Confidence 99999999999999988 678889999999999999995466 4777788999999999998832221 12111
Q ss_pred CCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCC-CCceEEEEecCCcccccchhhhhhHH
Q 036345 687 CLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKK-NLVCLELWFDREEEEATDENEAAKHE 765 (954)
Q Consensus 687 ~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~ 765 (954)
..++ +|+.|++++|... ..+.
T Consensus 191 -------------------------------------------------~~l~~~L~~L~l~~~~~~---------~~~~ 212 (336)
T 2ast_B 191 -------------------------------------------------AHVSETITQLNLSGYRKN---------LQKS 212 (336)
T ss_dssp -------------------------------------------------HHSCTTCCEEECCSCGGG---------SCHH
T ss_pred -------------------------------------------------HhcccCCCEEEeCCCccc---------CCHH
Confidence 2234 6666666665210 0112
Q ss_pred HHhhcCCCCCCCCEEEEeeec-CCCCCCcchhcccCccEEEEeCcCCCC--cCCCCCCCCCCceEeecCC
Q 036345 766 ATSEALRPNPNIEVLKIFQYK-GKTVFPSWIMSLCKLKVLLLSFCIKCE--IMPPLGKLPSLEVLSIWNM 832 (954)
Q Consensus 766 ~~~~~l~~~~~L~~L~l~~~~-~~~~lp~~~~~l~~L~~L~L~~c~~~~--~l~~l~~l~~L~~L~L~~~ 832 (954)
.+...+..+++|++|++++|. +....+..+..+++|+.|+|++|.... .+..++++++|+.|++++|
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 233344557889999999888 444467778888999999999986221 2334778999999999987
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=2.5e-14 Score=151.01 Aligned_cols=124 Identities=30% Similarity=0.452 Sum_probs=57.2
Q ss_pred CceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hhc
Q 036345 535 EKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IEK 613 (954)
Q Consensus 535 ~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~ 613 (954)
.+++.+.+.++.+..+ ..+..+++|++|++++|. +.. ++ .+..+++|++|++++| .+..+|.. +++
T Consensus 41 ~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~----l~~-~~-~l~~l~~L~~L~L~~n------~l~~~~~~~~~~ 107 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNK----LHD-IS-ALKELTNLTYLILTGN------QLQSLPNGVFDK 107 (272)
T ss_dssp TTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSC----CCC-CG-GGTTCTTCCEEECTTS------CCCCCCTTTTTT
T ss_pred cceeeeeeCCCCcccc-cccccCCCCcEEECCCCC----CCC-ch-hhcCCCCCCEEECCCC------ccCccChhHhcC
Confidence 3444455554444432 234445555555555543 222 11 2444555555555555 33333322 345
Q ss_pred cCcCceeeccCccccccccc-ccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCc
Q 036345 614 LKHLRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHN 672 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~ 672 (954)
+++|++|+|++|.+..+|.. ++.+++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC
Confidence 55555555555555544433 3455555555555554 3333332 344555555555554
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=5e-16 Score=173.51 Aligned_cols=245 Identities=15% Similarity=0.127 Sum_probs=161.9
Q ss_pred chhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccc----cccccc-------cCCCCccEEecc
Q 036345 578 LPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLE----ELPETC-------CELVNLQTLDIE 646 (954)
Q Consensus 578 ~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~ 646 (954)
++..+..+++|++|+|++|.+.. .....++..+.++++|++|+|++|.+. .+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGT-EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECH-HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCH-HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45557889999999999993321 011224556778999999999998654 345444 789999999999
Q ss_pred ccCCCc----cccccccCCCCCCEEeccCcccccc----CCCCCCCC---------CCCCccCceEecCCccCccccccc
Q 036345 647 ACGSLK----RLPQGIGKLVNLRHLMISHNVYLDY----MPKGIERL---------TCLRTLRELVVSRKGCNLGGLRHL 709 (954)
Q Consensus 647 ~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~L---------~~L~~L~~~~~~~~~~~l~~l~~L 709 (954)
+|.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|.+..+.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~------------ 170 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR------------ 170 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC------------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC------------
Confidence 998433 3788889999999999999865322 22222222 445544322110
Q ss_pred ccCCceeEEcCCCCCCCcc-ccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhh-cCCCCCCCCEEEEeeecC
Q 036345 710 NHLRGSFRIRGLGNVTHVD-EAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSE-ALRPNPNIEVLKIFQYKG 787 (954)
Q Consensus 710 ~~L~~~l~i~~l~~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~ 787 (954)
+.... ......+..+++|+.|++++|.... .....+.+ .+..+++|++|++++|.+
T Consensus 171 --------------l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--------~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 171 --------------LENGSMKEWAKTFQSHRLLHTVKMVQNGIRP--------EGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp --------------CTGGGHHHHHHHHHHCTTCCEEECCSSCCCH--------HHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred --------------CCcHHHHHHHHHHHhCCCcCEEECcCCCCCH--------hHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 00000 0001234567789999999887642 11122333 677788999999999987
Q ss_pred C----CCCCcchhcccCccEEEEeCcCCCCc----CC-CC--CCCCCCceEeecCCCCceE-----eCcccccCCCCCCC
Q 036345 788 K----TVFPSWIMSLCKLKVLLLSFCIKCEI----MP-PL--GKLPSLEVLSIWNMNSVKT-----VGDEFLGIGGDNGT 851 (954)
Q Consensus 788 ~----~~lp~~~~~l~~L~~L~L~~c~~~~~----l~-~l--~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~~~~~~ 851 (954)
. ..+|.++..+++|+.|+|++|.+... ++ .+ +.+++|+.|+|++|. +.. ++..+.
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-------- 299 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID-------- 299 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH--------
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH--------
Confidence 3 33677788889999999999987543 22 23 558999999999987 433 332221
Q ss_pred CcCCcccccCcccceeeccccc
Q 036345 852 SATSSVNVAFRKLKELAFWGLY 873 (954)
Q Consensus 852 ~~~~~~~~~f~~L~~L~l~~~~ 873 (954)
..+++|++|++.+++
T Consensus 300 -------~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 300 -------EKMPDLLFLELNGNR 314 (386)
T ss_dssp -------HHCTTCCEEECTTSB
T ss_pred -------hcCCCceEEEccCCc
Confidence 147888888888765
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=9.7e-14 Score=152.37 Aligned_cols=219 Identities=17% Similarity=0.140 Sum_probs=127.4
Q ss_pred CceeEEEecCCCccccccccccch-hhhccCcCceeeccCcccc-cccc-cccCCCCccEEeccccCCCcccc-ccccCC
Q 036345 586 TFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLE-ELPE-TCCELVNLQTLDIEACGSLKRLP-QGIGKL 661 (954)
Q Consensus 586 ~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~-~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l 661 (954)
++++.|+|++| .|..+|. .+.+|++|++|+|++|.+. .+|. .+.++++|+.+...+++.+..+| ..+..+
T Consensus 30 ~~l~~L~Ls~N------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLT------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEESC------CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEccCC------cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 45677777777 6666664 4677777777777777754 3443 35667666654444333355554 446677
Q ss_pred CCCCEEeccCccccccCCC-CCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCc-cCC
Q 036345 662 VNLRHLMISHNVYLDYMPK-GIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELD-KKK 739 (954)
Q Consensus 662 ~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~-~~~ 739 (954)
++|++|++++|.. ..+|. .+.....+..|. +.....+..+. ...+. ...
T Consensus 104 ~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~-------------------------l~~~~~i~~l~---~~~f~~~~~ 154 (350)
T 4ay9_X 104 PNLQYLLISNTGI-KHLPDVHKIHSLQKVLLD-------------------------IQDNINIHTIE---RNSFVGLSF 154 (350)
T ss_dssp TTCCEEEEEEECC-SSCCCCTTCCBSSCEEEE-------------------------EESCTTCCEEC---TTSSTTSBS
T ss_pred ccccccccccccc-ccCCchhhcccchhhhhh-------------------------hcccccccccc---ccchhhcch
Confidence 7777777776643 33332 111222222221 11100111000 00111 123
Q ss_pred CCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCc-chhcccCccEEEEeCcCCCCcCCCC
Q 036345 740 NLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPS-WIMSLCKLKVLLLSFCIKCEIMPPL 818 (954)
Q Consensus 740 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~c~~~~~l~~l 818 (954)
.++.|++++|.+.. +........+|++|.+.++...+.+|. .+..+++|+.|+|++|.+... |.
T Consensus 155 ~l~~L~L~~N~i~~-------------i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-p~- 219 (350)
T 4ay9_X 155 ESVILWLNKNGIQE-------------IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-PS- 219 (350)
T ss_dssp SCEEEECCSSCCCE-------------ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-CS-
T ss_pred hhhhhccccccccC-------------CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-Ch-
Confidence 56777887776542 222333456788999876544444876 467899999999999976644 33
Q ss_pred CCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccceeeccc
Q 036345 819 GKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKELAFWG 871 (954)
Q Consensus 819 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 871 (954)
+.+.+|+.|.+.++..++.+|. ...|++|+.+.+.+
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP~-----------------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLPT-----------------LEKLVALMEASLTY 255 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCCC-----------------TTTCCSCCEEECSC
T ss_pred hhhccchHhhhccCCCcCcCCC-----------------chhCcChhhCcCCC
Confidence 3467788888888887777763 12688999998864
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=9.6e-16 Score=182.13 Aligned_cols=111 Identities=22% Similarity=0.224 Sum_probs=61.8
Q ss_pred CceEEEEEEec-cccC--CcccccccCcceEEEeeccCCcccc-CCCchhhhcCCCceeEEEecCCCccccccccccchh
Q 036345 535 EKLYHLMLMIN-LFST--FPVSIRYAKKLRSLFLVANGSFKVL-SPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE 610 (954)
Q Consensus 535 ~~lr~L~l~~~-~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~ 610 (954)
+++++|++..+ .+.. ++.....+++|++|++++|. +... ...++.....+++|+.|++++|... -....++..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~l 206 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASE--VSFSALERL 206 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSC--CCHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCc--CCHHHHHHH
Confidence 46777777765 3332 23334467777777777764 1110 1112333346677777777776300 011222333
Q ss_pred hhccCcCceeeccCc-ccccccccccCCCCccEEecccc
Q 036345 611 IEKLKHLRFLKLSQV-DLEELPETCCELVNLQTLDIEAC 648 (954)
Q Consensus 611 i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~ 648 (954)
+.++++|++|++++| .+..+|..+..+++|+.|+++.|
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 445677777777776 45566666777777777775544
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=149.32 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=32.9
Q ss_pred cCcCceeeccCcccc-cccccc--cCCCCccEEeccccCCCcccc----ccccCCCCCCEEeccCccc
Q 036345 614 LKHLRFLKLSQVDLE-ELPETC--CELVNLQTLDIEACGSLKRLP----QGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 614 L~~L~~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp----~~i~~l~~L~~L~l~~~~~ 674 (954)
+.+|++|++++|.+. ..|..+ ..+++|++|++++|......| ..+..+++|++|++++|..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc
Confidence 445666666666655 344444 566666666666665322222 2234566666666666543
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=1.1e-13 Score=147.44 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=37.2
Q ss_pred CCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCC
Q 036345 773 PNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
.+++|++|++++|.+.. ++. +..+++|+.|+|++|.+.. ++.+..+++|+.|++++|.
T Consensus 154 ~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred cCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence 34556666666666555 443 5667777777777776543 4556777777777777765
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=9.7e-12 Score=138.79 Aligned_cols=297 Identities=12% Similarity=0.015 Sum_probs=180.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccc------cceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS------FEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~~~~ 244 (954)
++.++||+.+++++..++..... ....+.+.|+|++|+||||+|+.+++. .... -...+|+++....+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHH
Confidence 47799999999999999865321 124567899999999999999999874 2111 1346788888888899
Q ss_pred HHHHHHHHHhhcCCCC-cccHHHHHHHHHHHh--cCceeEEEecCCCCCCcc--ChhhHHhhhcCC-----CCCcEEEEe
Q 036345 245 RVARAIIEALEGSASN-LGELQSLLQRIQTSI--AGKKFLLVLDDMWTDDYS--KWEPFNNCLMNG-----LRGSKILVT 314 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~--~~~~l~~~l~~~-----~~gs~iiiT 314 (954)
.++..++.+++...+. ..........+.+.+ .+++.+|||||++.-... ..+.+...+... ..+..+|.|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999999999654322 223555666666666 356899999999643221 123333333211 446678888
Q ss_pred cCchhHHhh-----hcC--cceEeCCCCCHHHHHHHHHHHHcC--CCCCCCchhHHHHHHHHHHhcC---CChHHH-HHH
Q 036345 315 TRKKTVAQM-----MES--TDVFSIKELSKQECWSLFKRFAFF--GRHPSECEQLEEIGRKIVSRCK---GLPLAA-KTI 381 (954)
Q Consensus 315 tr~~~v~~~-----~~~--~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~~i~~~c~---glPlai-~~~ 381 (954)
|+....... ... ...+.+++++.++..+++.+.+.. ... ... .+..+.+++.++ |.|..+ ..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG-VLD---PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBC---SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCC---HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 876532111 111 147899999999999999987531 111 111 233456777777 999433 322
Q ss_pred Hhhh---c--C--CCCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCChhhhhHHhHhc-CCCCCcccchHHHHHHHH
Q 036345 382 GSLL---R--F--KKTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMVKRCFSYCA-VFPKDYNIEKDELIKVWM 453 (954)
Q Consensus 382 ~~~l---~--~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~li~~w~ 453 (954)
..+. . . .-+.+.+..++.... ...+.-++..||.+.+..+..++ ++.....+....+.+...
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 2221 1 1 125566666654321 12344567889988888776666 443222444454443332
Q ss_pred Hh-cccCCCCCchHHHHHHHHHHHHHhcCCceeee
Q 036345 454 AQ-GYIGPKENEEMEIIGQEYFDYLATRSFFQEFE 487 (954)
Q Consensus 454 a~-g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 487 (954)
.. .-+.. .......+..+++.|...+++....
T Consensus 320 ~~~~~~~~--~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 320 ELTSTLGL--EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHTTC--CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcCC--CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 21 00111 1112355678999999999999854
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=1.1e-13 Score=161.75 Aligned_cols=60 Identities=17% Similarity=0.017 Sum_probs=34.3
Q ss_pred cCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCC
Q 036345 737 KKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKC 812 (954)
Q Consensus 737 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~ 812 (954)
.+++|+.|+|+.|.+.... . +..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~-------------~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIV-------------P-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp SCTTCSEEECCSSCCCCCG-------------G-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEE
T ss_pred ccCCCCEEECcCCcCCCch-------------h-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCc
Confidence 3455666666666543211 1 4556666666666666655 43 3556666666666666544
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=7.5e-15 Score=162.15 Aligned_cols=86 Identities=12% Similarity=-0.051 Sum_probs=50.6
Q ss_pred CCceEEEEecCCcccccchhhhhhHHHHhhcCCCC-CCCCEEEEeeecCCCC----CCcchhc-ccCccEEEEeCcCCCC
Q 036345 740 NLVCLELWFDREEEEATDENEAAKHEATSEALRPN-PNIEVLKIFQYKGKTV----FPSWIMS-LCKLKVLLLSFCIKCE 813 (954)
Q Consensus 740 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~----lp~~~~~-l~~L~~L~L~~c~~~~ 813 (954)
+|+.|+|++|..... ....+...+..+ ++|++|++++|.+... ++..+.. .++|+.|+|++|.+..
T Consensus 168 ~L~~L~Ls~n~l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 168 NVNSLNLRGNNLASK--------NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp TCCEEECTTSCGGGS--------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred cccEeeecCCCCchh--------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 777887777765422 122333344444 4777787777765542 2333333 3477777777776554
Q ss_pred cCC-----CCCCCCCCceEeecCCC
Q 036345 814 IMP-----PLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 814 ~l~-----~l~~l~~L~~L~L~~~~ 833 (954)
..+ .+..+++|+.|+|++|.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCC
Confidence 322 24566777777777765
No 105
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=2e-11 Score=136.10 Aligned_cols=297 Identities=11% Similarity=0.031 Sum_probs=180.5
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc----cc--cceEEEEEeCCCC-CH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM----NS--FEIRMWVCVSDPF-DE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~s~~~-~~ 243 (954)
+..++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 37799999999999988765322 2245689999999999999999998842111 01 2356788877766 88
Q ss_pred HHHHHHHHHHhhcCCCC--cccHHHHHHHHHHHhcCceeEEEecCCCCCCccC-hhhHHhhhcCCCCCcEEEEecCchhH
Q 036345 244 FRVARAIIEALEGSASN--LGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSK-WEPFNNCLMNGLRGSKILVTTRKKTV 320 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~-~~~l~~~l~~~~~gs~iiiTtr~~~v 320 (954)
..++..++.++.+.... ..........+.+.+..++.+|||||++.-.... .+.+...+.....+..||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 89999999988543221 2234566777777887766699999995432222 23302233322267889999887532
Q ss_pred Hh----hh-cC-cceEeCCCCCHHHHHHHHHHHHcC-CCCCCCchhHHHHHHHHHHhcC---CChHH-HHHHHhhh--c-
Q 036345 321 AQ----MM-ES-TDVFSIKELSKQECWSLFKRFAFF-GRHPSECEQLEEIGRKIVSRCK---GLPLA-AKTIGSLL--R- 386 (954)
Q Consensus 321 ~~----~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---glPla-i~~~~~~l--~- 386 (954)
.. .+ .. ...+++++++.++..++|...+.. -...... .+..+.|++.|+ |.|.. +..+-... .
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 11 11 11 238999999999999999987531 1111112 234556777777 88873 33332222 1
Q ss_pred --CCCCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCChhhhhHHhHhcCCCCCcccchHHHHHHHHHhcccCCCCCc
Q 036345 387 --FKKTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFPKDYNIEKDELIKVWMAQGYIGPKENE 464 (954)
Q Consensus 387 --~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 464 (954)
..-+.+++..++.... ...+.-++..|+.+.+..+..++....+-.+. +. ..-+++.+- . . .
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~--~~~~~~~~g-~-~-~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KM--YTDLCNKFK-Q-K-P 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HH--HHHHHHHTT-C-C-C
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HH--HHHHHHHcC-C-C-C
Confidence 1235677777665421 12355677889988888777776611101111 01 112222211 0 1 1
Q ss_pred hHHHHHHHHHHHHHhcCCceeeec
Q 036345 465 EMEIIGQEYFDYLATRSFFQEFEK 488 (954)
Q Consensus 465 ~~e~~~~~~~~~L~~~~ll~~~~~ 488 (954)
........+++.|...+++.....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEec
Confidence 123456788999999999987553
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=1.2e-11 Score=138.02 Aligned_cols=298 Identities=13% Similarity=0.036 Sum_probs=185.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccc-cceEEEEEeCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS-FEIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~ 249 (954)
++.++||+.+++++..++.....+.....+.+.|+|++|+||||||+.+++. .... -..++|+.++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999887532110123348999999999999999999874 2222 134678887887888899999
Q ss_pred HHHHhhcCCCC-cccHHHHHHHHHHHhc--CceeEEEecCCCCCCccChhhHHhhhcCC-C---CCcEEEEecCchhHHh
Q 036345 250 IIEALEGSASN-LGELQSLLQRIQTSIA--GKKFLLVLDDMWTDDYSKWEPFNNCLMNG-L---RGSKILVTTRKKTVAQ 322 (954)
Q Consensus 250 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~---~gs~iiiTtr~~~v~~ 322 (954)
++..++...+. ......+...+.+.+. +++.+|||||++.-+......+...+... . .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988654322 2244555666666553 66889999999765444455555544321 1 4677888887664433
Q ss_pred hhc-------CcceEeCCCCCHHHHHHHHHHHHcCCC-CCCCchhHHHHHHHHHHhc---------CCChHHHHHHHhhh
Q 036345 323 MME-------STDVFSIKELSKQECWSLFKRFAFFGR-HPSECEQLEEIGRKIVSRC---------KGLPLAAKTIGSLL 385 (954)
Q Consensus 323 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c---------~glPlai~~~~~~l 385 (954)
.+. ....+.+.+++.++..+++...+.... .... -.+..+.|++.+ +|.|..+..+....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 221 123699999999999999988753211 1111 145567788888 78876554443322
Q ss_pred c------CC--CCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCChhhhhHHhHhcCCC---CCcccchHHHHHHHHH
Q 036345 386 R------FK--KTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFP---KDYNIEKDELIKVWMA 454 (954)
Q Consensus 386 ~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~li~~w~a 454 (954)
. .. -+.+....+..... ...+.-.+..||.+.+.++..++.+. .+..+....+...+-.
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 11 12333333332211 11123345678888888887777654 2224556666555443
Q ss_pred ----hcccCCCCCchHHHHHHHHHHHHHhcCCceeeec
Q 036345 455 ----QGYIGPKENEEMEIIGQEYFDYLATRSFFQEFEK 488 (954)
Q Consensus 455 ----~g~i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~~ 488 (954)
.|. .. .+ ......++++|...+++.....
T Consensus 321 ~~~~~~~-~~---~~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 321 VCEEYGE-RP---RV-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHTTC-CC---CC-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHcCC-CC---CC-HHHHHHHHHHHHhCCCeEEeee
Confidence 121 11 11 2446688999999999988654
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=1.4e-12 Score=135.87 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=45.3
Q ss_pred CCCCCCCEEEEeeecCCCCCCc-chhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCC
Q 036345 772 RPNPNIEVLKIFQYKGKTVFPS-WIMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~ 833 (954)
..+++|++|++++|.+.. +|. .+..+++|+.|+|++|.+....+ .+..+++|+.|+|++|+
T Consensus 128 ~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 345567777777777666 544 57778888888888888776555 47788889999998887
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=4.8e-13 Score=156.32 Aligned_cols=169 Identities=21% Similarity=0.264 Sum_probs=108.4
Q ss_pred cCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCC
Q 036345 583 DQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLV 662 (954)
Q Consensus 583 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 662 (954)
..+++|+.|++++| .+..+| .++.|++|++|+|++|.+..+|. ++.|++|+.|+|++|. +..+| .+..++
T Consensus 40 ~~L~~L~~L~l~~n------~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 109 (605)
T 1m9s_A 40 NELNSIDQIIANNS------DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLK 109 (605)
T ss_dssp HHHTTCCCCBCTTC------CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCT
T ss_pred hcCCCCCEEECcCC------CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCC
Confidence 34455555555555 444443 25555555555555555555544 5555555555555554 44443 355555
Q ss_pred CCCEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCc
Q 036345 663 NLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLV 742 (954)
Q Consensus 663 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 742 (954)
+|++|++++|.. ..+ ..+..+++|+
T Consensus 110 ~L~~L~Ls~N~l-~~l------------------------------------------------------~~l~~l~~L~ 134 (605)
T 1m9s_A 110 KLKSLSLEHNGI-SDI------------------------------------------------------NGLVHLPQLE 134 (605)
T ss_dssp TCCEEECTTSCC-CCC------------------------------------------------------GGGGGCTTCS
T ss_pred CCCEEEecCCCC-CCC------------------------------------------------------ccccCCCccC
Confidence 555555554421 111 1133456778
Q ss_pred eEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCC
Q 036345 743 CLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLP 822 (954)
Q Consensus 743 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~ 822 (954)
.|+|+.|.+.. +..+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|.+.. ++.+..|+
T Consensus 135 ~L~Ls~N~l~~--------------l~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~-l~~l~~l~ 197 (605)
T 1m9s_A 135 SLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LRALAGLK 197 (605)
T ss_dssp EEECCSSCCCC--------------CGGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCT
T ss_pred EEECCCCccCC--------------chhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCCC-ChHHccCC
Confidence 88888776542 1356678999999999999887 554 7889999999999998765 57789999
Q ss_pred CCceEeecCCC
Q 036345 823 SLEVLSIWNMN 833 (954)
Q Consensus 823 ~L~~L~L~~~~ 833 (954)
+|+.|+|++|.
T Consensus 198 ~L~~L~L~~N~ 208 (605)
T 1m9s_A 198 NLDVLELFSQE 208 (605)
T ss_dssp TCSEEECCSEE
T ss_pred CCCEEEccCCc
Confidence 99999999987
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=8e-13 Score=131.92 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=38.0
Q ss_pred CCCCCCCEEEEeeec-CCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCC
Q 036345 772 RPNPNIEVLKIFQYK-GKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~-~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
..+++|++|++++|. +.. +| .+..+++|+.|++++|.+.. ++.+..+++|+.|++++|.
T Consensus 133 ~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred hhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 344566666666665 333 55 46667777777777776544 4466777778888777766
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=1.5e-12 Score=135.52 Aligned_cols=152 Identities=28% Similarity=0.332 Sum_probs=111.1
Q ss_pred CCceEEEEEEeccccCCcc-cccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhh
Q 036345 534 KEKLYHLMLMINLFSTFPV-SIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i 611 (954)
+..++.|+++++.+..++. .+..+++|++|++++|. +....+..|..++.|++|+|++| .+..+| ..+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~ 103 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ----LQTLSAGVFDDLTELGTLGLANN------QLASLPLGVF 103 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC----CCCCCTTTTTTCTTCCEEECTTS------CCCCCCTTTT
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc----CCccCHhHhccCCcCCEEECCCC------cccccChhHh
Confidence 4577888888888776443 57778888888888876 55555666788888888888888 666665 346
Q ss_pred hccCcCceeeccCccccccccc-ccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccccCCCCCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDYMPKGIERLTCLR 689 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 689 (954)
..+++|++|+|++|.++.+|.. +..+++|++|+|++|. +..+|. .+..+++|++|++++|......|..+..+++|+
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 7888888888888888877765 5778888888888886 666665 477888888888888855433334567777777
Q ss_pred ccCceEe
Q 036345 690 TLRELVV 696 (954)
Q Consensus 690 ~L~~~~~ 696 (954)
.|++..+
T Consensus 183 ~L~l~~N 189 (251)
T 3m19_A 183 TITLFGN 189 (251)
T ss_dssp EEECCSC
T ss_pred EEEeeCC
Confidence 7755443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=3.2e-13 Score=141.34 Aligned_cols=166 Identities=18% Similarity=0.165 Sum_probs=109.9
Q ss_pred CCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCC
Q 036345 585 LTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNL 664 (954)
Q Consensus 585 l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L 664 (954)
+..+..++++++ .+..++ .+..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|. +..+++|
T Consensus 18 l~~l~~l~l~~~------~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L 87 (263)
T 1xeu_A 18 LANAVKQNLGKQ------SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHTCS------CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSC
T ss_pred HHHHHHHHhcCC------Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCC
Confidence 445555666666 555555 4666777777777777777666 56677777777777765 566665 6677777
Q ss_pred CEEeccCccccccCCCCCCCCCCCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceE
Q 036345 665 RHLMISHNVYLDYMPKGIERLTCLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCL 744 (954)
Q Consensus 665 ~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 744 (954)
++|++++|.. ..+|.... ++|+.|
T Consensus 88 ~~L~L~~N~l-~~l~~~~~-------------------------------------------------------~~L~~L 111 (263)
T 1xeu_A 88 EELSVNRNRL-KNLNGIPS-------------------------------------------------------ACLSRL 111 (263)
T ss_dssp CEEECCSSCC-SCCTTCCC-------------------------------------------------------SSCCEE
T ss_pred CEEECCCCcc-CCcCcccc-------------------------------------------------------CcccEE
Confidence 7777776632 22221000 234444
Q ss_pred EEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCC
Q 036345 745 ELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSL 824 (954)
Q Consensus 745 ~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L 824 (954)
++++|.... ++.+..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.+... +.+..+++|
T Consensus 112 ~L~~N~l~~--------------~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 112 FLDNNELRD--------------TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKV 174 (263)
T ss_dssp ECCSSCCSB--------------SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCC
T ss_pred EccCCccCC--------------ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCC
Confidence 554444321 1234556778888888888776 55 677889999999999987665 778899999
Q ss_pred ceEeecCCC
Q 036345 825 EVLSIWNMN 833 (954)
Q Consensus 825 ~~L~L~~~~ 833 (954)
+.|++++|.
T Consensus 175 ~~L~l~~N~ 183 (263)
T 1xeu_A 175 NWIDLTGQK 183 (263)
T ss_dssp CEEEEEEEE
T ss_pred CEEeCCCCc
Confidence 999999887
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=4.4e-14 Score=156.00 Aligned_cols=248 Identities=13% Similarity=0.057 Sum_probs=140.7
Q ss_pred EEeccccC-CcccccccCcceEEEeeccCCccccCCCch----hhhcCCC-ceeEEEecCCCcccccccccc-chhhhcc
Q 036345 542 LMINLFST-FPVSIRYAKKLRSLFLVANGSFKVLSPVLP----GLFDQLT-FLRTLKITGESAGVEKSIREI-PKEIEKL 614 (954)
Q Consensus 542 l~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L 614 (954)
++.+.+.. +|..+...++|+.|++++|. +....+ ..+..++ .|++|+|++| .+... +..+..+
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N------~l~~~~~~~l~~~ 74 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNN----LYSISTVELIQAFANTPASVTSLNLSGN------SLGFKNSDELVQI 74 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHTCCTTCCEEECCSS------CGGGSCHHHHHHH
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCC----CChHHHHHHHHHHHhCCCceeEEECcCC------CCCHHHHHHHHHH
Confidence 33444443 23333444457777777775 333333 4566676 7778888777 44433 3445544
Q ss_pred -----CcCceeeccCccccccccc-----ccCC-CCccEEeccccCCCccccc-c----ccC-CCCCCEEeccCccccc-
Q 036345 615 -----KHLRFLKLSQVDLEELPET-----CCEL-VNLQTLDIEACGSLKRLPQ-G----IGK-LVNLRHLMISHNVYLD- 676 (954)
Q Consensus 615 -----~~L~~L~L~~~~i~~lp~~-----i~~L-~~L~~L~L~~~~~l~~lp~-~----i~~-l~~L~~L~l~~~~~~~- 676 (954)
++|++|+|++|.+...+.. +..+ ++|++|++++|. +...+. . +.. .++|++|++++|....
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 7777888887777644322 4444 677888887776 444332 2 233 2577778777774432
Q ss_pred ---cCCCCCCCCC-CCCccCceEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccC-CCCceEEEEecCC
Q 036345 677 ---YMPKGIERLT-CLRTLRELVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKK-KNLVCLELWFDRE 751 (954)
Q Consensus 677 ---~~p~~i~~L~-~L~~L~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~ 751 (954)
.++..+..+. +|++|++..+. +.. .........+... ++|+.|+|++|..
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~-----l~~--------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNN-----LAS--------------------KNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSC-----GGG--------------------SCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHHHHhcCCccccEeeecCCC-----Cch--------------------hhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 1112222222 44444221110 000 0000111123334 4899999998876
Q ss_pred cccccchhhhhhHHHHhhcCCC-CCCCCEEEEeeecCCCCCC----cchhcccCccEEEEeCcCCCCc--------CCCC
Q 036345 752 EEEATDENEAAKHEATSEALRP-NPNIEVLKIFQYKGKTVFP----SWIMSLCKLKVLLLSFCIKCEI--------MPPL 818 (954)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~L~~c~~~~~--------l~~l 818 (954)
... ....+...+.. +++|++|++++|.+...-+ ..+..+++|+.|+|++|.+... ...+
T Consensus 209 ~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 209 GLK--------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp GGS--------CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred Chh--------HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 532 12334444444 4689999999998876222 2334678999999999973322 2246
Q ss_pred CCCCCCceEeecCCC
Q 036345 819 GKLPSLEVLSIWNMN 833 (954)
Q Consensus 819 ~~l~~L~~L~L~~~~ 833 (954)
..+++|+.|++++|.
T Consensus 281 ~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 281 PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEEEECTTSCB
T ss_pred ccCCceEEEecCCCc
Confidence 788999999999987
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=2e-12 Score=149.23 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=25.4
Q ss_pred CCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCc
Q 036345 776 NIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEI 814 (954)
Q Consensus 776 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~ 814 (954)
.|+.|++++|.+.. +|.++..+++|+.|+|++|.+...
T Consensus 208 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 208 TEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred cceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 34677777776665 777666677777777777766543
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=2e-12 Score=128.94 Aligned_cols=146 Identities=18% Similarity=0.273 Sum_probs=121.5
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccc-cchhhh
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIRE-IPKEIE 612 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~-lp~~i~ 612 (954)
..+++.++++++.+..+| .+..+++|++|++++|. +.. + ..+..++.|++|++++| .+.. .|..++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~----~~~-~-~~l~~l~~L~~L~l~~n------~l~~~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH----ATN-Y-NPISGLSNLERLRIMGK------DVTSDKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC----CSC-C-GGGTTCTTCCEEEEECT------TCBGGGSCCCT
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC----CCc-c-hhhhcCCCCCEEEeECC------ccCcccChhhc
Confidence 457889999999998877 78899999999999985 332 2 35788999999999999 5554 577799
Q ss_pred ccCcCceeeccCccccc-ccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCcc
Q 036345 613 KLKHLRFLKLSQVDLEE-LPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTL 691 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 691 (954)
++++|++|++++|.+.. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|.. ..++ .+..+++|++|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEE
Confidence 99999999999999984 78889999999999999997677887 689999999999999864 4555 67777888877
Q ss_pred CceE
Q 036345 692 RELV 695 (954)
Q Consensus 692 ~~~~ 695 (954)
++..
T Consensus 187 ~l~~ 190 (197)
T 4ezg_A 187 YAFS 190 (197)
T ss_dssp EECB
T ss_pred EeeC
Confidence 5543
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.1e-12 Score=132.34 Aligned_cols=123 Identities=29% Similarity=0.466 Sum_probs=85.8
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hhccCcC
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IEKLKHL 617 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L 617 (954)
.+....+.+..+|..+ .++|+.|+++++. +....+..|..++.|++|++++| .+..+|.. +.++++|
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS----LKSLPNGVFDELTSLTQLYLGGN------KLQSLPNGVFNKLTSL 78 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSS------CCCCCCTTTTTTCTTC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCc----cCcCChhhhcccccCcEEECCCC------ccCccChhhcCCCCCc
Confidence 3455555555555443 4578888888875 44444555677888888888887 56666544 5778888
Q ss_pred ceeeccCccccccccc-ccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCccc
Q 036345 618 RFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVY 674 (954)
Q Consensus 618 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 674 (954)
++|+|++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|..
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcc
Confidence 8888888888877655 5778888888888876 5566554 57788888888877743
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=2.2e-12 Score=131.92 Aligned_cols=143 Identities=27% Similarity=0.437 Sum_probs=109.3
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hhccCcC
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IEKLKHL 617 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L 617 (954)
.++++.+.+..+|..+. ++|+.|++++|. +....+..|..+++|++|+|++| .+..+|.. +.++++|
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~N------~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQ----ITKLEPGVFDSLINLKELYLGSN------QLGALPVGVFDSLTQL 90 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSS------CCCCCCTTTTTTCTTC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCc----cCccCHHHhhCccCCcEEECCCC------CCCCcChhhcccCCCc
Confidence 45666666776776553 788888888886 55656777888888999999888 67777644 6788889
Q ss_pred ceeeccCccccccccc-ccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCC-CCCCCCCCCCccCceE
Q 036345 618 RFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMP-KGIERLTCLRTLRELV 695 (954)
Q Consensus 618 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~ 695 (954)
++|+|++|.++.+|.. +..+++|++|+|++|. +..+|..+..+++|++|++++|.. ..+| ..+..+++|+.|.+..
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeC
Confidence 9999998888887765 5788899999998887 778888888888999999988854 4555 3466777777765443
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=4e-12 Score=146.73 Aligned_cols=58 Identities=9% Similarity=-0.020 Sum_probs=40.8
Q ss_pred CCCCEEEEeeecCCCCCCcchhcccCc-------cEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCce
Q 036345 775 PNIEVLKIFQYKGKTVFPSWIMSLCKL-------KVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVK 836 (954)
Q Consensus 775 ~~L~~L~l~~~~~~~~lp~~~~~l~~L-------~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~ 836 (954)
++|+.|++++|.+.. +|. +.. +| +.|+|++|.+....+.+..+++|+.|+|++|+...
T Consensus 180 ~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 180 ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 677778888777775 776 433 56 88888888877544447778888888888887333
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=2.3e-12 Score=130.91 Aligned_cols=143 Identities=22% Similarity=0.302 Sum_probs=103.1
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcC
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHL 617 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L 617 (954)
.+++.++.+..+|..+. ++|+.|++++|. +....+..|..++.|++|+|++| .+..+ |..+.++++|
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~----i~~i~~~~~~~l~~L~~L~Ls~N------~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT----IKVIPPGAFSPYKKLRRIDLSNN------QISELAPDAFQGLRSL 82 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC----CCEECTTSSTTCTTCCEEECCSS------CCCEECTTTTTTCSSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc----CCCcCHhHhhCCCCCCEEECCCC------cCCCcCHHHhhCCcCC
Confidence 45566666666676553 678888888876 44444556788888888888888 56665 6678888888
Q ss_pred ceeeccCccccccccc-ccCCCCccEEeccccCCCccc-cccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCce
Q 036345 618 RFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRL-PQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLREL 694 (954)
Q Consensus 618 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 694 (954)
++|+|++|.|+.+|.. +..+++|++|+|++|. +..+ |..+..+++|++|++++|......+..+..+++|+.|++.
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 8888888888888766 4778888888888887 4444 5567788888888888886433333346677777776543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=2.8e-12 Score=124.29 Aligned_cols=133 Identities=23% Similarity=0.206 Sum_probs=107.2
Q ss_pred CCceEEEEEEecccc--CCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccc-cchh
Q 036345 534 KEKLYHLMLMINLFS--TFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIRE-IPKE 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~-lp~~ 610 (954)
+.++++|+++++.+. .+|..+..+++|+.|++++|. +... ..+..+++|++|++++| .+.. +|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----l~~~--~~~~~l~~L~~L~Ls~N------~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISV--SNLPKLPKLKKLELSEN------RIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----CCCC--SSCCCCSSCCEEEEESC------CCCSCCCHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----CCCh--hhhccCCCCCEEECcCC------cCchHHHHH
Confidence 577889999998887 677777888999999999886 4433 45788889999999998 5555 6777
Q ss_pred hhccCcCceeeccCccccccc--ccccCCCCccEEeccccCCCccccc----cccCCCCCCEEeccCccccccCCC
Q 036345 611 IEKLKHLRFLKLSQVDLEELP--ETCCELVNLQTLDIEACGSLKRLPQ----GIGKLVNLRHLMISHNVYLDYMPK 680 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p~ 680 (954)
+.++++|++|+|++|.++.+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~ 164 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED-QEAPD 164 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS-CBCCS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh-hhccc
Confidence 778999999999999988876 678889999999999987 777776 678899999999988853 44554
No 120
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.9e-11 Score=133.85 Aligned_cols=297 Identities=11% Similarity=0.086 Sum_probs=175.3
Q ss_pred cCCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccccc---ceEEEEEeCCCCCHHHH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF---EIRMWVCVSDPFDEFRV 246 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~~ 246 (954)
.+..++||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 347799999999999998875311 123458899999999999999999884 33322 34678887776677788
Q ss_pred HHHHHHHhhcCCCC-cccHHHHHHHHHHHhc--CceeEEEecCCCCCC----ccChhhHHhhhcC-CCCCcEEEEecCch
Q 036345 247 ARAIIEALEGSASN-LGELQSLLQRIQTSIA--GKKFLLVLDDMWTDD----YSKWEPFNNCLMN-GLRGSKILVTTRKK 318 (954)
Q Consensus 247 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iiiTtr~~ 318 (954)
+..++.+++..... ..+.......+.+.+. +++.+||||+++.-. ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88888777543221 2234555566666664 458999999995421 2223333333322 23456678888765
Q ss_pred hHHhhhc-----C--cceEeCCCCCHHHHHHHHHHHHcCCC-CCCCchhHHHHHHHHHHhcC---CChHHHHHHHhhhc-
Q 036345 319 TVAQMME-----S--TDVFSIKELSKQECWSLFKRFAFFGR-HPSECEQLEEIGRKIVSRCK---GLPLAAKTIGSLLR- 386 (954)
Q Consensus 319 ~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~---glPlai~~~~~~l~- 386 (954)
.....+. . ...+++++++.++..+++.+.+.... ..... .++.+.+++.++ |.|..+..+.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4322211 1 14799999999999999988642111 11112 344556777777 99985443322211
Q ss_pred -----C--CCCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCChhhhhHHhHhcCCCC-C-cccchHHHHHHHH--Hh
Q 036345 387 -----F--KKTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVFPK-D-YNIEKDELIKVWM--AQ 455 (954)
Q Consensus 387 -----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~i~~~~li~~w~--a~ 455 (954)
. .-+.+.+..++.... ...+.-.+..+|.+.+..+..++.+.+ + ..+....+.+... ++
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 124555555554321 123455677888888877776663222 1 1233333322221 11
Q ss_pred cc-cCCCCCchHHHHHHHHHHHHHhcCCceeee
Q 036345 456 GY-IGPKENEEMEIIGQEYFDYLATRSFFQEFE 487 (954)
Q Consensus 456 g~-i~~~~~~~~e~~~~~~~~~L~~~~ll~~~~ 487 (954)
.+ +... .......+++.|...+++....
T Consensus 321 ~~g~~~~----~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 321 KLGVEAV----TQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHTCCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcCCCCC----CHHHHHHHHHHHHhCCCEEEEe
Confidence 11 1111 1234567899999999998753
No 121
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=1e-11 Score=132.11 Aligned_cols=120 Identities=18% Similarity=0.333 Sum_probs=54.8
Q ss_pred ceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccC
Q 036345 536 KLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLK 615 (954)
Q Consensus 536 ~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~ 615 (954)
+++.++++++.+..++ .+..+++|++|++++|. +... +. +..+++|++|++++| .+..+|. +++++
T Consensus 47 ~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~----l~~~-~~-l~~l~~L~~L~l~~n------~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK----LTDI-KP-LANLKNLGWLFLDEN------KVKDLSS-LKDLK 112 (291)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC----CCCC-GG-GTTCTTCCEEECCSS------CCCCGGG-GTTCT
T ss_pred cccEEEccCCCcccCh-hHhcCCCCCEEEccCCc----cCCC-cc-cccCCCCCEEECCCC------cCCCChh-hccCC
Confidence 3444555444444432 24444555555555443 2221 11 444555555555554 3333332 44455
Q ss_pred cCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCc
Q 036345 616 HLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHN 672 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 672 (954)
+|++|++++|.+..++ .+..+++|++|++++|. +..+ ..+..+++|++|++++|
T Consensus 113 ~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC
Confidence 5555555555544442 34445555555555544 3333 23444555555555444
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=7.7e-12 Score=126.99 Aligned_cols=145 Identities=21% Similarity=0.232 Sum_probs=106.6
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCch-hhhcCCCceeEEEecCCCccccccccccch-hhhccCc
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLP-GLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKLKH 616 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~ 616 (954)
.++++++.++.+|..+ .+.++.|++++|. +....+ ..|..++.|++|+|++| .+..++. .+.++++
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~----l~~~~~~~~~~~l~~L~~L~L~~N------~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNE----FTVLEATGIFKKLPQLRKINFSNN------KITDIEEGAFEGASG 82 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC----CCEECCCCCGGGCTTCCEEECCSS------CCCEECTTTTTTCTT
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCc----CCccCchhhhccCCCCCEEECCCC------cCCEECHHHhCCCCC
Confidence 5777777777777655 3456788888886 443322 44778888888888888 6666654 6888888
Q ss_pred CceeeccCccccccccc-ccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceE
Q 036345 617 LRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELV 695 (954)
Q Consensus 617 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 695 (954)
|++|+|++|.++.+|.. +..+++|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|++..
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 88888888888877654 78888888888888873333466788888888888888865544567777777777775443
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=6e-14 Score=163.02 Aligned_cols=199 Identities=17% Similarity=0.195 Sum_probs=116.8
Q ss_pred cccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccc--------cccccccchhhhccCcCceee-ccCc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGV--------EKSIREIPKEIEKLKHLRFLK-LSQV 625 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--------~~~l~~lp~~i~~L~~L~~L~-L~~~ 625 (954)
..+++|+.|++++|. +. .+|..++.++.|+.|+++++.... ......+|..+++|++|+.|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n~----L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEK----ST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHH----HH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhh----HH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 456677777777765 33 356667777777777775552000 001234566777888888887 5555
Q ss_pred ccccccc------cccC--CCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceEec
Q 036345 626 DLEELPE------TCCE--LVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELVVS 697 (954)
Q Consensus 626 ~i~~lp~------~i~~--L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 697 (954)
.+..++. .+.. ...|++|++++|. +..+|. ++.+++|++|++++|.. ..+|..++.+++|+.|+
T Consensus 421 ~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~----- 492 (567)
T 1dce_A 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQ----- 492 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEE-----
T ss_pred ccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEE-----
Confidence 4433332 1111 1258888888886 777886 88888888888888753 46665555544444442
Q ss_pred CCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCC
Q 036345 698 RKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNI 777 (954)
Q Consensus 698 ~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 777 (954)
|++|.+.. ++ .+..+++|
T Consensus 493 ------------------------------------------------Ls~N~l~~-------------lp-~l~~l~~L 510 (567)
T 1dce_A 493 ------------------------------------------------ASDNALEN-------------VD-GVANLPRL 510 (567)
T ss_dssp ------------------------------------------------CCSSCCCC-------------CG-GGTTCSSC
T ss_pred ------------------------------------------------CCCCCCCC-------------Cc-ccCCCCCC
Confidence 22222110 01 23345566
Q ss_pred CEEEEeeecCCCCC-CcchhcccCccEEEEeCcCCCCcCCCCC----CCCCCceEe
Q 036345 778 EVLKIFQYKGKTVF-PSWIMSLCKLKVLLLSFCIKCEIMPPLG----KLPSLEVLS 828 (954)
Q Consensus 778 ~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~c~~~~~l~~l~----~l~~L~~L~ 828 (954)
+.|++++|.+.... |..+..+++|+.|+|++|.+...+|... .+|+|+.|+
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 66666666666522 6666777777777777776655544432 256666664
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=4.7e-12 Score=151.96 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=88.6
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
...++++++..+.+...+..+....+|+.+.+.............+..+..++.|++|+|++| .+..+|..+.+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n------~l~~l~~~~~~ 245 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL------QIFNISANIFK 245 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS------CCSCCCGGGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC------CCCCCChhhcC
Confidence 455777888777776655555555555555444322000011134566788888888888888 67778888888
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
+++|++|+|++|.|+.+|..+++|++|++|+|++|. +..+|..++.|++|++|++++|. +..+|..++.|++|++|++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 888888888888888888888888888888888887 66888888888888888888884 4678888888888888876
Q ss_pred eEecCC
Q 036345 694 LVVSRK 699 (954)
Q Consensus 694 ~~~~~~ 699 (954)
..+...
T Consensus 324 ~~N~l~ 329 (727)
T 4b8c_D 324 EGNPLE 329 (727)
T ss_dssp TTSCCC
T ss_pred CCCccC
Confidence 555433
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=4.8e-12 Score=119.89 Aligned_cols=123 Identities=22% Similarity=0.245 Sum_probs=64.8
Q ss_pred CceEEEEEEecccc--CCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccc-cchhh
Q 036345 535 EKLYHLMLMINLFS--TFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIRE-IPKEI 611 (954)
Q Consensus 535 ~~lr~L~l~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~-lp~~i 611 (954)
.++++++++++.+. .+|..+..+++|+.|++++|. +... ..+..+++|++|++++| .+.. +|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~--~~~~~l~~L~~L~Ls~n------~i~~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSI--ANLPKLNKLKKLELSDN------RVSGGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----CCCC--TTCCCCTTCCEEECCSS------CCCSCTHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----CCCc--hhhhcCCCCCEEECCCC------cccchHHHHh
Confidence 44555666655555 345555555555555555554 2222 33455555555555555 3333 44445
Q ss_pred hccCcCceeeccCccccccc--ccccCCCCccEEeccccCCCccccc----cccCCCCCCEEecc
Q 036345 612 EKLKHLRFLKLSQVDLEELP--ETCCELVNLQTLDIEACGSLKRLPQ----GIGKLVNLRHLMIS 670 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~ 670 (954)
+++++|++|++++|.++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 55555555555555555543 455555555555555554 444443 34555555555543
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=1.6e-11 Score=125.54 Aligned_cols=130 Identities=27% Similarity=0.409 Sum_probs=114.8
Q ss_pred CCceEEEEEEeccccCC-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
+.+++.|++++|.+..+ |..+..+++|+.|++++|. +....+..|..+++|++|+|++| .+..+|.. +
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~----l~~i~~~~~~~l~~L~~L~Ls~N------~l~~l~~~~~ 108 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ----LGALPVGVFDSLTQLTVLDLGTN------QLTVLPSAVF 108 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSS------CCCCCCTTTT
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC----CCCcChhhcccCCCcCEEECCCC------cCCccChhHh
Confidence 57899999999999885 5678899999999999997 55555667899999999999999 77777654 7
Q ss_pred hccCcCceeeccCcccccccccccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccc
Q 036345 612 EKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 674 (954)
..+++|++|+|++|.+..+|..+..+++|++|+|++|. +..+|. .+..+++|++|++++|+.
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 89999999999999999999999999999999999997 777775 478899999999999864
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1e-11 Score=120.37 Aligned_cols=130 Identities=22% Similarity=0.220 Sum_probs=109.2
Q ss_pred cccCcceEEEeeccCCccccC-CCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCccccc-ccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLS-PVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEE-LPE 632 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~ 632 (954)
...++|+.|++++|. +. ..+|..+..+++|++|++++| .+..+ ..++.+++|++|+|++|.+.. +|.
T Consensus 21 ~~~~~L~~L~l~~n~----l~~~~i~~~~~~l~~L~~L~l~~n------~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 21 RTPAAVRELVLDNCK----SNDGKIEGLTAEFVNLEFLSLINV------GLISV-SNLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp SCTTSCSEEECCSCB----CBTTBCSSCCGGGGGCCEEEEESS------CCCCC-SSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred CCcccCCEEECCCCC----CChhhHHHHHHhCCCCCEEeCcCC------CCCCh-hhhccCCCCCEEECcCCcCchHHHH
Confidence 345889999999987 43 346666889999999999999 66666 678999999999999999997 787
Q ss_pred cccCCCCccEEeccccCCCcccc--ccccCCCCCCEEeccCccccccCCC----CCCCCCCCCccCceEec
Q 036345 633 TCCELVNLQTLDIEACGSLKRLP--QGIGKLVNLRHLMISHNVYLDYMPK----GIERLTCLRTLRELVVS 697 (954)
Q Consensus 633 ~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 697 (954)
.+..+++|++|++++|. +..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|+...+.
T Consensus 90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCC
Confidence 78889999999999997 77776 6789999999999999964 56665 67888999998776543
No 128
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=5.8e-11 Score=123.15 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=119.5
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
.+++||+.+++.+..++.... ..+.+.|+|++|+||||+|+.+++... ..+....+ .+. .... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~~~-~~~---~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLN--CETGITAT-PCG---VCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSCSS-CCS---CSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCCCC-CCc---ccHH-HHHHh
Confidence 469999999999999987533 234789999999999999999987421 11100000 000 0000 00000
Q ss_pred HHh-----hcCCCCcccHHHHHHHHHHH-----hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhH-
Q 036345 252 EAL-----EGSASNLGELQSLLQRIQTS-----IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTV- 320 (954)
Q Consensus 252 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v- 320 (954)
... ..........+.. ..+.+. ..+++.+||+||++.-+...+..+...+.....+..+|+||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 0000000111111 122222 1356799999999765566677777777666667888888876432
Q ss_pred Hhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 036345 321 AQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLL 385 (954)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 385 (954)
... ......+++++++.++..+++.+.+........ .+..+.|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 222468999999999999999987643222111 3456779999999999988776443
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=3.1e-11 Score=121.53 Aligned_cols=130 Identities=26% Similarity=0.445 Sum_probs=111.9
Q ss_pred CCceEEEEEEeccccCCccc-ccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTFPVS-IRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
+.+++.|+++++.+..++.. +..+++|++|++++|. +....+..|..+++|++|++++| .+..+|.. +
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK----LQSLPNGVFNKLTSLTYLNLSTN------QLQSLPNGVF 96 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSS------CCCCCCTTTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc----cCccChhhcCCCCCcCEEECCCC------cCCccCHhHh
Confidence 56899999999999886654 6789999999999986 55555666889999999999999 77777654 7
Q ss_pred hccCcCceeeccCccccccccc-ccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCccc
Q 036345 612 EKLKHLRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVY 674 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 674 (954)
+++++|++|+|++|.+..+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|..
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence 8999999999999999988776 6899999999999997 6677765 78899999999999854
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=2.1e-11 Score=123.77 Aligned_cols=130 Identities=26% Similarity=0.387 Sum_probs=113.7
Q ss_pred CCceEEEEEEeccccCCcc-cccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-h
Q 036345 534 KEKLYHLMLMINLFSTFPV-SIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-I 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i 611 (954)
+..++.|++++|.+..++. .+..+++|+.|++++|. +....+..|.++++|++|+|++| .+..+|.. +
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~----i~~~~~~~~~~l~~L~~L~Ls~N------~l~~l~~~~f 100 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ----ISELAPDAFQGLRSLNSLVLYGN------KITELPKSLF 100 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC----CCEECTTTTTTCSSCCEEECCSS------CCCCCCTTTT
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc----CCCcCHHHhhCCcCCCEEECCCC------cCCccCHhHc
Confidence 5689999999999988655 68889999999999997 55656788999999999999999 78888765 6
Q ss_pred hccCcCceeeccCcccccc-cccccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccc
Q 036345 612 EKLKHLRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 674 (954)
.++++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|. .+..+++|++|++++|+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8999999999999999987 5678999999999999998 666665 488899999999999864
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=2.4e-11 Score=123.32 Aligned_cols=130 Identities=16% Similarity=0.247 Sum_probs=112.1
Q ss_pred CCceEEEEEEeccccCCc--ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-h
Q 036345 534 KEKLYHLMLMINLFSTFP--VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-E 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~ 610 (954)
+..++.|+++.|.+..++ ..+..+++|+.|++++|. +....+..|.+++.|++|+|++| .+..+|. .
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~ 100 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----ITDIEEGAFEGASGVNEILLTSN------RLENVQHKM 100 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSS------CCCCCCGGG
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc----CCEECHHHhCCCCCCCEEECCCC------ccCccCHhH
Confidence 556789999999998763 347899999999999997 55555667899999999999999 7777754 5
Q ss_pred hhccCcCceeeccCcccccc-cccccCCCCccEEeccccCCCccc-cccccCCCCCCEEeccCccc
Q 036345 611 IEKLKHLRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRL-PQGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~ 674 (954)
++++++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+ |..+..+++|++|++++|+.
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 89999999999999999977 6789999999999999998 5555 77899999999999999864
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=6.1e-12 Score=119.18 Aligned_cols=125 Identities=23% Similarity=0.258 Sum_probs=105.0
Q ss_pred ccCcceEEEeeccCCccccC-CCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCccccc-cccc
Q 036345 556 YAKKLRSLFLVANGSFKVLS-PVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEE-LPET 633 (954)
Q Consensus 556 ~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~ 633 (954)
..++|+.|++++|. +. +.+|..+..+++|++|++++| .+..+ ..++++++|++|++++|.+.. +|..
T Consensus 15 ~~~~l~~L~l~~n~----l~~~~~~~~~~~l~~L~~L~l~~n------~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSR----SNEGKLEGLTDEFEELEFLSTINV------GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCB----CBTTBCCSCCTTCTTCCEEECTTS------CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CCccCeEEEccCCc----CChhHHHHHHhhcCCCcEEECcCC------CCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 45789999999987 44 346677889999999999999 66666 678999999999999999997 8888
Q ss_pred ccCCCCccEEeccccCCCcccc--ccccCCCCCCEEeccCccccccCCC----CCCCCCCCCccCc
Q 036345 634 CCELVNLQTLDIEACGSLKRLP--QGIGKLVNLRHLMISHNVYLDYMPK----GIERLTCLRTLRE 693 (954)
Q Consensus 634 i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~ 693 (954)
++.+++|++|++++|. +..+| ..+..+++|++|++++|.. ...|. .+..+++|+.|+.
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 8889999999999998 77665 7899999999999999954 55554 5777888888754
No 133
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=3.7e-11 Score=125.63 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=114.2
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
..+++.|++.++.+..++ .+..+++|++|++++|. +... +. +..++.|++|++++| .+..+|.. ..
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~----i~~~-~~-l~~l~~L~~L~L~~N------~l~~l~~~-~~ 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ----ISDL-SP-LKDLTKLEELSVNRN------RLKNLNGI-PS 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC----CCCC-GG-GTTCSSCCEEECCSS------CCSCCTTC-CC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc----cCCC-hh-hccCCCCCEEECCCC------ccCCcCcc-cc
Confidence 467888999998888766 67889999999999886 4443 33 788999999999999 66666653 33
Q ss_pred cCcCceeeccCcccccccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 614 LKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
.+|++|+|++|.++.+| .+..+++|++|++++|. +..+| .+..+++|++|++++|.. ..+ ..+..+++|+.|++
T Consensus 106 -~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i-~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEI-TNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp -SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCC-CBC-TTSTTCCCCCEEEE
T ss_pred -CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcC-cch-HHhccCCCCCEEeC
Confidence 89999999999998886 58899999999999987 77776 588899999999998864 334 55777778887766
Q ss_pred eEec
Q 036345 694 LVVS 697 (954)
Q Consensus 694 ~~~~ 697 (954)
..+.
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 5543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2.1e-11 Score=119.05 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=61.7
Q ss_pred cccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccc
Q 036345 555 RYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETC 634 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i 634 (954)
..+++|+.|++++|. +.. ++......+.|++|++++| .+..+ ..++++++|++|+|++|.++.+|..+
T Consensus 16 ~~~~~L~~L~l~~n~----l~~-i~~~~~~~~~L~~L~Ls~N------~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK----IPV-IENLGATLDQFDAIDFSDN------EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp ECTTSCEEEECTTSC----CCS-CCCGGGGTTCCSEEECCSS------CCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred CCcCCceEEEeeCCC----Cch-hHHhhhcCCCCCEEECCCC------CCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 344555555555553 222 2222222235555555555 33333 33555555555555555555555443
Q ss_pred -cCCCCccEEeccccCCCccccc--cccCCCCCCEEeccCccccccCCCC----CCCCCCCCccCceE
Q 036345 635 -CELVNLQTLDIEACGSLKRLPQ--GIGKLVNLRHLMISHNVYLDYMPKG----IERLTCLRTLRELV 695 (954)
Q Consensus 635 -~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~ 695 (954)
..+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. +..+++|+.|+...
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEE
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCc
Confidence 555555555555554 444554 455555555555555533 334432 44555555554433
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.3e-11 Score=117.61 Aligned_cols=128 Identities=20% Similarity=0.116 Sum_probs=108.9
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhh-h
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEI-E 612 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i-~ 612 (954)
..+++.+++++|.+..++......++|+.|++++|. +... ..+..++.|++|++++| .+..+|..+ +
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~----l~~~--~~l~~l~~L~~L~Ls~N------~l~~~~~~~~~ 85 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE----IRKL--DGFPLLRRLKTLLVNNN------RICRIGEGLDQ 85 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC----CCEE--CCCCCCSSCCEEECCSS------CCCEECSCHHH
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC----CCcc--cccccCCCCCEEECCCC------cccccCcchhh
Confidence 678999999999998875433334499999999996 4432 45788999999999999 777887654 8
Q ss_pred ccCcCceeeccCcccccccc--cccCCCCccEEeccccCCCcccccc----ccCCCCCCEEeccCccc
Q 036345 613 KLKHLRFLKLSQVDLEELPE--TCCELVNLQTLDIEACGSLKRLPQG----IGKLVNLRHLMISHNVY 674 (954)
Q Consensus 613 ~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~l~~~~~ 674 (954)
.+++|++|+|++|.+..+|. .++.+++|++|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999999999999997 89999999999999998 7788875 88999999999998753
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=6.4e-11 Score=117.35 Aligned_cols=125 Identities=22% Similarity=0.305 Sum_probs=97.3
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchh-hhcCCCceeEEEecCCCcccccccccc-chhhhccC
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPG-LFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLK 615 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~ 615 (954)
+.++++++.+..+|..+. .+|+.|++++|. +....+. .|..+++|++|+|++| .+..+ |..+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~----i~~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNE----LGRISSDGLFGRLPHLVKLELKRN------QLTGIEPNAFEGAS 78 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCC----CCSBCCSCSGGGCTTCCEEECCSS------CCCCBCTTTTTTCT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCc----CCccCCccccccCCCCCEEECCCC------CCCCcCHhHcCCcc
Confidence 457777777777777554 388899998886 4443333 4788899999999988 66666 67788899
Q ss_pred cCceeeccCccccccccc-ccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccc
Q 036345 616 HLRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 674 (954)
+|++|+|++|.|+.+|.. +..+++|++|+|++|......|..+..+++|++|++++|..
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 999999999998877654 78889999999999884445577788889999999988854
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=4.8e-10 Score=114.26 Aligned_cols=186 Identities=16% Similarity=0.056 Sum_probs=117.0
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE-IRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 249 (954)
..+++|++..++++.+++.... ...+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH
Confidence 3568999999999999987532 22389999999999999999987311 11121 2334444433332222211
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhH-Hh-hhcCc
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTV-AQ-MMEST 327 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v-~~-~~~~~ 327 (954)
+..+..... ...+++.+||+||++.-....+..+...+.....+.++|+||+.... .. .....
T Consensus 89 -~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 -IKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp -HHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -HHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 111111000 01257889999999765555566676666665667888888876531 11 11223
Q ss_pred ceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 328 DVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 328 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
..+++.+++.++..+++.+.+......-. .+..+.+++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 48999999999999999887642221111 3456678899999999655443
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=3.1e-11 Score=132.85 Aligned_cols=129 Identities=22% Similarity=0.248 Sum_probs=78.8
Q ss_pred CCceEEEEEEeccccCCccc-cc-ccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-h
Q 036345 534 KEKLYHLMLMINLFSTFPVS-IR-YAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-E 610 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~ 610 (954)
+..++.|++++|.+..++.. +. .+++|++|++++|. +....+..|.+++.|++|+|++| .+..+|. .
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~ 107 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVPVPNLRYLDLSSN------HLHTLDEFL 107 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSS------CCCEECTTT
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc----CCccChhhccCCCCCCEEECCCC------cCCcCCHHH
Confidence 34566667766666654433 33 66667777776665 44434455666667777777766 5555543 3
Q ss_pred hhccCcCceeeccCcccccc-cccccCCCCccEEeccccCCCccccccc----cCCCCCCEEeccCcc
Q 036345 611 IEKLKHLRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLPQGI----GKLVNLRHLMISHNV 673 (954)
Q Consensus 611 i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i----~~l~~L~~L~l~~~~ 673 (954)
+.++.+|++|+|++|.|..+ |..+..+++|++|+|++|. +..+|..+ ..+++|++|++++|.
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 66667777777777766655 4556666777777777665 55666554 456667777776664
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=5.2e-11 Score=142.91 Aligned_cols=118 Identities=25% Similarity=0.273 Sum_probs=77.7
Q ss_pred CcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCccccc
Q 036345 550 FPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEE 629 (954)
Q Consensus 550 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~ 629 (954)
.+..+..++.|+.|++++|. +.. ++..+..+++|++|+|++| .+..+|..|++|++|++|+|++|.|+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~----l~~-l~~~~~~l~~L~~L~Ls~N------~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ----IFN-ISANIFKYDFLTRLYLNGN------SLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ------CCCCCCEEECTTSC----CSC-CCGGGGGCCSCSCCBCTTS------CCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred ChhhhccCCCCcEEECCCCC----CCC-CChhhcCCCCCCEEEeeCC------cCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 34556667777777777765 332 3433456777777777777 566677777777777777777777777
Q ss_pred ccccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCC
Q 036345 630 LPETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMP 679 (954)
Q Consensus 630 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p 679 (954)
+|..++.|.+|++|+|++|. +..+|..|+.|++|++|++++|.....+|
T Consensus 285 lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred cChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 77777777777777777775 66777777777777777777775443333
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=2.9e-10 Score=112.54 Aligned_cols=121 Identities=21% Similarity=0.349 Sum_probs=82.6
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhhhccCcC
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEIEKLKHL 617 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L 617 (954)
.++++++.+..+|..+ .++|+.|++++|. +.. +|..|..+++|++|+|++| .+..++ ..+.++++|
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~----i~~-ip~~~~~l~~L~~L~Ls~N------~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQ----FTL-VPKELSNYKHLTLIDLSNN------RISTLSNQSFSNMTQL 80 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSSC----CCS-CCGGGGGCTTCCEEECCSS------CCCCCCTTTTTTCTTC
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCCc----Cch-hHHHhhcccCCCEEECCCC------cCCEeCHhHccCCCCC
Confidence 4556666666666554 2577777777775 332 4556777777777777777 556654 447777777
Q ss_pred ceeeccCcccccccc-cccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCcc
Q 036345 618 RFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNV 673 (954)
Q Consensus 618 ~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 673 (954)
++|+|++|.|+.+|. .+..+++|++|+|++|. +..+|.. +..+++|++|++++|+
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 777777777776654 47777777777777776 6666653 6677777777777764
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.09 E-value=2.4e-10 Score=111.63 Aligned_cols=124 Identities=27% Similarity=0.463 Sum_probs=97.3
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hhccCc
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IEKLKH 616 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~ 616 (954)
+.+++..+.+..+|..+ .++|+.|+++++. +....+..|..+++|++|++++| .+..+|.. ++++++
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSQN------QIQSLPDGVFDKLTK 77 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSS------CCCCCCTTTTTTCTT
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCc----ccEeCHHHhcCcccccEEECCCC------cceEeChhHccCCCc
Confidence 35666777777666544 3689999999886 45555566788899999999998 67777654 688999
Q ss_pred CceeeccCccccccccc-ccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCccc
Q 036345 617 LRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVY 674 (954)
Q Consensus 617 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 674 (954)
|++|+|++|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|..
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 99999999999888765 5888999999999987 6777766 46789999999988854
No 142
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=1.3e-10 Score=127.81 Aligned_cols=143 Identities=22% Similarity=0.239 Sum_probs=113.1
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhc-CCCceeEEEecCCCccccccccccc-hhhhccC
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFD-QLTFLRTLKITGESAGVEKSIREIP-KEIEKLK 615 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~ 615 (954)
+.+++.++.+..+|..+. +.++.|++++|. +....+..|. ++++|++|+|++| .+..++ ..+.+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~----l~~l~~~~~~~~l~~L~~L~L~~N------~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN----LSRLRAEWTPTRLTNLHSLLLSHN------HLNFISSEAFVPVP 88 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC----CCEECTTSSSSCCTTCCEEECCSS------CCCEECTTTTTTCT
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC----CCccChhhhhhcccccCEEECCCC------cCCccChhhccCCC
Confidence 467788888888887653 568999999997 5555556666 8999999999999 777776 4699999
Q ss_pred cCceeeccCcccccccc-cccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCC----CCCCCCCc
Q 036345 616 HLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGI----ERLTCLRT 690 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i----~~L~~L~~ 690 (954)
+|++|+|++|.++.+|. .+..+.+|++|+|++|......|..+..+++|++|++++|. +..+|..+ ..+++|+.
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCE
Confidence 99999999999998876 58999999999999998433446778999999999999985 45666553 45666766
Q ss_pred cCc
Q 036345 691 LRE 693 (954)
Q Consensus 691 L~~ 693 (954)
|++
T Consensus 168 L~L 170 (361)
T 2xot_A 168 LDL 170 (361)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=3.9e-12 Score=127.01 Aligned_cols=142 Identities=19% Similarity=0.223 Sum_probs=111.8
Q ss_pred eEEEEEEec--cccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhcc
Q 036345 537 LYHLMLMIN--LFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKL 614 (954)
Q Consensus 537 lr~L~l~~~--~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 614 (954)
++...+.+. .++.+|..+..+++|++|++++|. +.. +| .+..+++|++|++++| .+..+|..+..+
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~----l~~-l~-~~~~l~~L~~L~l~~n------~l~~l~~~~~~~ 92 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN----IEK-IS-SLSGMENLRILSLGRN------LIKKIENLDAVA 92 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE----ESC-CC-CHHHHTTCCEEEEEEE------EECSCSSHHHHH
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC----Ccc-cc-ccccCCCCCEEECCCC------CcccccchhhcC
Confidence 444444433 445566688899999999999986 444 45 6788999999999999 788888888889
Q ss_pred CcCceeeccCcccccccccccCCCCccEEeccccCCCccccc--cccCCCCCCEEeccCccccccCCCC----------C
Q 036345 615 KHLRFLKLSQVDLEELPETCCELVNLQTLDIEACGSLKRLPQ--GIGKLVNLRHLMISHNVYLDYMPKG----------I 682 (954)
Q Consensus 615 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----------i 682 (954)
++|++|++++|.+..+| .+..+++|++|++++|. +..+|. .+..+++|++|++++|......|.. +
T Consensus 93 ~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 99999999999999988 68899999999999987 666654 6888999999999998664444432 5
Q ss_pred CCCCCCCccC
Q 036345 683 ERLTCLRTLR 692 (954)
Q Consensus 683 ~~L~~L~~L~ 692 (954)
..+++|+.|+
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 6667777665
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=4.6e-10 Score=130.37 Aligned_cols=118 Identities=24% Similarity=0.281 Sum_probs=82.3
Q ss_pred cceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccCCC
Q 036345 559 KLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCELV 638 (954)
Q Consensus 559 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~ 638 (954)
.|+.|++++|. +.. +|. +..+++|++|+|++| .+..+|..++++++|++|+|++|.++.+| .++.|+
T Consensus 442 ~L~~L~Ls~n~----l~~-lp~-~~~l~~L~~L~Ls~N------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKD----LTV-LCH-LEQLLLVTHLDLSHN------RLRALPPALAALRCLEVLQASDNALENVD-GVANLP 508 (567)
T ss_dssp TCSEEECTTSC----CSS-CCC-GGGGTTCCEEECCSS------CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred CceEEEecCCC----CCC-CcC-ccccccCcEeecCcc------cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC
Confidence 36677777765 333 444 677777888888777 66677777788888888888888877777 777788
Q ss_pred CccEEeccccCCCccc--cccccCCCCCCEEeccCccccccCCCCCCC----CCCCCcc
Q 036345 639 NLQTLDIEACGSLKRL--PQGIGKLVNLRHLMISHNVYLDYMPKGIER----LTCLRTL 691 (954)
Q Consensus 639 ~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~----L~~L~~L 691 (954)
+|++|+|++|. +..+ |..++.+++|++|++++|.. ...|+.+.. +++|+.|
T Consensus 509 ~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 509 RLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEE
T ss_pred CCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCcc
Confidence 88888888776 5555 77777788888888877754 444444332 4555554
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.99 E-value=1e-09 Score=108.66 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=98.6
Q ss_pred eEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh--hhccCcCceeeccCcccccc-cccccCC
Q 036345 561 RSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE--IEKLKHLRFLKLSQVDLEEL-PETCCEL 637 (954)
Q Consensus 561 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~--i~~L~~L~~L~L~~~~i~~l-p~~i~~L 637 (954)
++++++++. +.. +|..+ ...|++|++++| .+..++.. ++++++|++|+|++|.|+.+ |..+..+
T Consensus 11 ~~l~~s~~~----l~~-ip~~~--~~~l~~L~l~~n------~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRG----LKE-IPRDI--PLHTTELLLNDN------ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSC----CSS-CCSCC--CTTCSEEECCSC------CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CEEEcCCCC----cCc-CccCC--CCCCCEEECCCC------cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 788888876 333 44423 238999999999 77777653 89999999999999999977 7789999
Q ss_pred CCccEEeccccCCCcccc-ccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCceE
Q 036345 638 VNLQTLDIEACGSLKRLP-QGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRELV 695 (954)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 695 (954)
++|++|+|++|. +..+| ..+..+++|++|++++|......|..+..+++|++|++..
T Consensus 78 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 78 SHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp TTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 999999999998 55555 4588999999999999977666788888888888886543
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=2.8e-09 Score=115.41 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=116.6
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE-IRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 249 (954)
..+++|++..++.+..++.... ...+.|+|++|+||||+|+.+++.-. ...+. ..+++..+...... .+.+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~ 91 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRN 91 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHT
T ss_pred HHHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHH
Confidence 3569999999999999987432 22389999999999999999987411 11111 23444433322221 1222
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh-HHhh-hcC
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT-VAQM-MES 326 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~~~ 326 (954)
+++.+.... ..+ .+++.+||+||++.-....+..+...+.....++++|+||+... +... ...
T Consensus 92 ~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 92 QIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 222221000 001 35688999999976555556667666665556788888886643 2111 123
Q ss_pred cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHH-HHHHHh
Q 036345 327 TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLA-AKTIGS 383 (954)
Q Consensus 327 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla-i~~~~~ 383 (954)
...+++.+++.++..+++...+......-. .+....|++.|+|.|.. +..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 458999999999999999886532211111 34567799999999954 444433
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=8.1e-10 Score=119.85 Aligned_cols=125 Identities=15% Similarity=0.085 Sum_probs=77.0
Q ss_pred CCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC-CCCCCCCCceEeecCCCCceEeCcccccCCCCCCC
Q 036345 773 PNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP-PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGT 851 (954)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 851 (954)
.+.++..+.+.++.....+......+++|+.|+|.+|......+ .+..+++|+.|+|.++ ++.++...+.
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~------- 270 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS------- 270 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-------
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh-------
Confidence 34556666666543221111111136778888888776544333 3777888888888775 6677665442
Q ss_pred CcCCcccccCcccc-eeeccccccccccccccccccccccccceecccccccCcCCCC-CCCCCCCcceEE
Q 036345 852 SATSSVNVAFRKLK-ELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPD-QLLRSTTLENLE 920 (954)
Q Consensus 852 ~~~~~~~~~f~~L~-~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 920 (954)
++++|+ .+.+.+ +++.+.. ..+..+++|+.|++.++ .++.++. .+.++++|+.|+
T Consensus 271 --------~~~~L~~~l~l~~--~l~~I~~---~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 271 --------NCGRLAGTLELPA--SVTAIEF---GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp --------TCTTCCEEEEECT--TCCEECT---TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred --------CChhccEEEEEcc--cceEEch---hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 567777 777765 3444432 34557888888888766 4777765 456678888776
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.96 E-value=1.7e-09 Score=117.22 Aligned_cols=268 Identities=16% Similarity=0.077 Sum_probs=143.6
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
..+++|++..++.+...+...... ......+.|+|++|+|||++|+.+++. ... ..+++..+......+
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~----- 79 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD----- 79 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH-----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH-----
Confidence 367999999999888877532110 112346889999999999999999873 221 233444333222111
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC------------------CCcEEE
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL------------------RGSKIL 312 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii 312 (954)
+...+... ..+..+|+|||+..-.......+...+.... ++.++|
T Consensus 80 ----------------l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 80 ----------------LAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----------------HHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----------------HHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 11111110 1355689999996544434444544443221 235677
Q ss_pred EecCchh-HHhhh-cC-cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcC--
Q 036345 313 VTTRKKT-VAQMM-ES-TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRF-- 387 (954)
Q Consensus 313 iTtr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~-- 387 (954)
.||.... +...+ .. ...+.+.+++.++..+++.+.+...... .. .+....+++.++|.|..+..+...+..
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-IT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6665432 21111 11 2579999999999999998876433221 11 355677999999999888766544321
Q ss_pred ----C--CCHHHHHHHHhhhhhcccccccchhhHHHhhhcCCChhhhhHHhHhc-CCCCC----------cccchHHHH-
Q 036345 388 ----K--KTREEWQRILDSEMWKLKEFEKGLLAPLLLSYNDLPTMVKRCFSYCA-VFPKD----------YNIEKDELI- 449 (954)
Q Consensus 388 ----~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~-~fp~~----------~~i~~~~li- 449 (954)
. -+.+....++... ...+..++...+..+..+. .|..+ ..+++..+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1 1334444443321 1122333433333333222 11111 112333322
Q ss_pred ---HHHHHhcccCC-CCCchHHHHHHHHHH-HHHhcCCcee
Q 036345 450 ---KVWMAQGYIGP-KENEEMEIIGQEYFD-YLATRSFFQE 485 (954)
Q Consensus 450 ---~~w~a~g~i~~-~~~~~~e~~~~~~~~-~L~~~~ll~~ 485 (954)
++-+..|++.. ..+....+.|..||+ ++.+|+++|+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 23445778753 334556778888887 8888888875
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=2.2e-09 Score=106.08 Aligned_cols=120 Identities=24% Similarity=0.341 Sum_probs=96.3
Q ss_pred eEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccc-cccCCCC
Q 036345 561 RSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPE-TCCELVN 639 (954)
Q Consensus 561 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~ 639 (954)
++++++++. +.. +|..+ .+.|++|+|++| .+..+|..+.++++|++|+|++|.|+.++. .+..+++
T Consensus 13 ~~l~~~~~~----l~~-ip~~~--~~~l~~L~L~~n------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSNKG----LKV-LPKGI--PRDVTELYLDGN------QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp TEEECTTSC----CSS-CCSCC--CTTCCEEECCSS------CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEcCCCC----CCc-CCCCC--CCCCCEEECCCC------cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence 567777765 333 34322 368999999999 788899999999999999999999998864 5899999
Q ss_pred ccEEeccccCCCccccc-cccCCCCCCEEeccCccccccCCC-CCCCCCCCCccCceE
Q 036345 640 LQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDYMPK-GIERLTCLRTLRELV 695 (954)
Q Consensus 640 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~ 695 (954)
|++|+|++|. +..+|. .+..+++|++|++++|.. ..+|. .+..+++|+.|++..
T Consensus 80 L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 80 LLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCC
Confidence 9999999998 666654 689999999999999965 55665 477788888775543
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=2.2e-09 Score=104.09 Aligned_cols=100 Identities=23% Similarity=0.358 Sum_probs=69.2
Q ss_pred eEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcCceeeccCccccccccc-ccCCC
Q 036345 561 RSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHLRFLKLSQVDLEELPET-CCELV 638 (954)
Q Consensus 561 r~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~ 638 (954)
+.++++++. +.. +|..+ .+.|++|+|++| .+..+ |..++++++|++|+|++|.|+.+|.. +..++
T Consensus 15 ~~l~~~~n~----l~~-iP~~~--~~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIR----LAS-VPAGI--PTDKQRLWLNNN------QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCSSC----CSS-CCSCC--CTTCSEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCCCC----CCc-cCCCc--CCCCcEEEeCCC------CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 556666654 222 33322 267778888877 56666 45677788888888888888877765 46788
Q ss_pred CccEEeccccCCCcccccc-ccCCCCCCEEeccCccc
Q 036345 639 NLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVY 674 (954)
Q Consensus 639 ~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 674 (954)
+|++|+|++|. +..+|.. +..+++|++|++++|..
T Consensus 82 ~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 82 QLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred hhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 88888888876 6667665 77788888888887743
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.85 E-value=3.9e-08 Score=103.50 Aligned_cols=208 Identities=8% Similarity=-0.050 Sum_probs=125.5
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccc---cc--ceEEEEEeCCCCCHHHHH
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMN---SF--EIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~s~~~~~~~~~ 247 (954)
.+.|||+|.++|...|...-. .+....+.|+|++|+|||++|+.|++.-.... .. -.++.|++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 388999999999988765432 23566889999999999999999988521111 11 135677777778889999
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHHh---cCceeEEEecCCCCCCccChhhHHhhhcCC-CCCc--EEEEecCchh--
Q 036345 248 RAIIEALEGSASNLGELQSLLQRIQTSI---AGKKFLLVLDDMWTDDYSKWEPFNNCLMNG-LRGS--KILVTTRKKT-- 319 (954)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs--~iiiTtr~~~-- 319 (954)
..|++++.+..............+.+.+ .++++++|||++..-. .-+.+...+.+. ..++ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999764322222222233333332 4678999999995432 334454444321 1122 2333333221
Q ss_pred ---HH----hhhcCcceEeCCCCCHHHHHHHHHHHHcCCCCC-----------------------------------CCc
Q 036345 320 ---VA----QMMESTDVFSIKELSKQECWSLFKRFAFFGRHP-----------------------------------SEC 357 (954)
Q Consensus 320 ---v~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-----------------------------------~~~ 357 (954)
+. ..++ ...+.+.+++.++-.+++.+++-..... -.+
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINN 255 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCH
Confidence 11 1121 2478999999999999998876331110 123
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHHhhh
Q 036345 358 EQLEEIGRKIVSRCKGLPLAAKTIGSLL 385 (954)
Q Consensus 358 ~~~~~~~~~i~~~c~glPlai~~~~~~l 385 (954)
..++-+|++++...|-.-.|+..+-...
T Consensus 256 ~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 256 KITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 4456666666666777777776654433
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=9.1e-09 Score=99.70 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=70.3
Q ss_pred EEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hhccCc
Q 036345 538 YHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IEKLKH 616 (954)
Q Consensus 538 r~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~ 616 (954)
+.++++++.+..+|..+. ++|+.|++++|. +....+..|.++++|++|+|++| .+..+|.. +.++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~Ls~N------~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ----ITKLEPGVFDHLVNLQQLYFNSN------KLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSS------CCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC----ccccCHHHhcCCcCCCEEECCCC------CCCccChhHhCCcch
Confidence 346666666666666553 677777777775 45545666677777777777777 56666554 467777
Q ss_pred CceeeccCccccccccc-ccCCCCccEEeccccCCCccccc
Q 036345 617 LRFLKLSQVDLEELPET-CCELVNLQTLDIEACGSLKRLPQ 656 (954)
Q Consensus 617 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~ 656 (954)
|++|+|++|.|+.+|.. +..+++|++|+|++|. +...|.
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 77777777777777665 6677777777777766 444443
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=9.1e-09 Score=99.37 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=68.6
Q ss_pred ceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc-chhhhccCcCceeeccCccccccccc-ccCC
Q 036345 560 LRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI-PKEIEKLKHLRFLKLSQVDLEELPET-CCEL 637 (954)
Q Consensus 560 Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L 637 (954)
.++++++++. +.. +|..+ .+.|++|+|++| .+..+ |..+.++++|++|+|++|.|+.+|.. +..+
T Consensus 11 ~~~l~~s~n~----l~~-ip~~~--~~~l~~L~L~~N------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 11 GTTVDCSGKS----LAS-VPTGI--PTTTQVLYLYDN------QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp TTEEECTTSC----CSS-CCSCC--CTTCSEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEEeCCCC----cCc-cCccC--CCCCcEEEcCCC------cCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence 3566666654 332 33322 367777888777 66666 45577788888888888887777665 4677
Q ss_pred CCccEEeccccCCCcccccc-ccCCCCCCEEeccCccc
Q 036345 638 VNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVY 674 (954)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 674 (954)
++|++|+|++|. +..+|.. +..+++|++|++++|+.
T Consensus 78 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 78 TQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 888888888776 6666654 67778888888877753
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=3e-08 Score=107.46 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=115.3
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccccc-ceEEEEEeCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF-EIRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~ 249 (954)
..+++|++..++.+..++.... ...+.++|++|+||||+|+.+++.-. ...+ ...+.+..+..... ..+..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIRE 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHH
Confidence 3569999999999999887532 22489999999999999999987411 1111 11233333321000 00111
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHH--h-cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhH-Hhh-h
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTS--I-AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTV-AQM-M 324 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v-~~~-~ 324 (954)
.+ ...... + .+++.++|+||++.-....+..+...+.....++++|+||..... ... .
T Consensus 96 ~~-----------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 KV-----------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HH-----------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HH-----------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 11 111110 1 266789999999766556667777777665667888888866431 111 1
Q ss_pred cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHh
Q 036345 325 ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGS 383 (954)
Q Consensus 325 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 383 (954)
.....+++.+++.++..+++...+......- -.+....|++.++|.|..+..+..
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCEE----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2234789999999999999988764322111 135567789999999987655443
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.78 E-value=4e-10 Score=112.32 Aligned_cols=122 Identities=25% Similarity=0.252 Sum_probs=104.1
Q ss_pred CCceEEEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhc
Q 036345 534 KEKLYHLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEK 613 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~ 613 (954)
..+++.|++++|.+..+| .+..+++|++|++++|. +.. +|..+..++.|++|++++| .+..+| .+++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~----l~~-l~~~~~~~~~L~~L~L~~N------~l~~l~-~~~~ 113 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL----IKK-IENLDAVADTLEELWISYN------QIASLS-GIEK 113 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE----ECS-CSSHHHHHHHCSEEEEEEE------ECCCHH-HHHH
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC----ccc-ccchhhcCCcCCEEECcCC------cCCcCC-cccc
Confidence 568899999999998887 88999999999999996 443 5666778899999999999 777777 6999
Q ss_pred cCcCceeeccCcccccccc--cccCCCCccEEeccccCCCcccccc----------ccCCCCCCEEe
Q 036345 614 LKHLRFLKLSQVDLEELPE--TCCELVNLQTLDIEACGSLKRLPQG----------IGKLVNLRHLM 668 (954)
Q Consensus 614 L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----------i~~l~~L~~L~ 668 (954)
+++|++|++++|.+..+|. .+..+++|++|++++|......|.. +..+++|++|+
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999999998775 7899999999999999833333332 78899999997
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=1.6e-08 Score=97.63 Aligned_cols=99 Identities=23% Similarity=0.384 Sum_probs=57.1
Q ss_pred EEEEEeccccCCcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchh-hhccCcC
Q 036345 539 HLMLMINLFSTFPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKE-IEKLKHL 617 (954)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~L 617 (954)
.++++++.+..+|..+ .++|+.|++++|. +....+..|.+++.|++|+|++| .+..+|.. +.++++|
T Consensus 13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~----i~~~~~~~~~~l~~L~~L~Ls~N------~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQ----ITKLEPGVFDRLTQLTRLDLDNN------QLTVLPAGVFDKLTQL 80 (170)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSS------CCCCCCTTTTTTCTTC
T ss_pred EEEeCCCCcCccCccC--CCCCcEEEcCCCc----CCccChhhhcCcccCCEEECCCC------CcCccChhhccCCCCC
Confidence 4555555555555544 2556666666664 44444555566666666666666 45555443 4566666
Q ss_pred ceeeccCccccccccc-ccCCCCccEEeccccC
Q 036345 618 RFLKLSQVDLEELPET-CCELVNLQTLDIEACG 649 (954)
Q Consensus 618 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 649 (954)
++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 6666666666665543 5566666666666655
No 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=3.7e-08 Score=95.97 Aligned_cols=121 Identities=26% Similarity=0.442 Sum_probs=94.9
Q ss_pred ceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhhccCcCceeeccCccccccccc-ccCC
Q 036345 560 LRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLEELPET-CCEL 637 (954)
Q Consensus 560 Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L 637 (954)
.+.+.+.++. +.. +|. ...+.|+.|++++| .+..+|. .++++++|++|++++|.++.+|.. +..+
T Consensus 9 ~~~l~~~~~~----l~~-~p~--~~~~~l~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 9 GTEIRCNSKG----LTS-VPT--GIPSSATRLELESN------KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp TTEEECCSSC----CSS-CCT--TCCTTCSEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEEecCCC----Ccc-CCC--CCCCCCcEEEeCCC------cccEeCHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence 4677777765 333 332 23478999999999 6777765 478999999999999999988865 6899
Q ss_pred CCccEEeccccCCCcccccc-ccCCCCCCEEeccCccccccCCCC-CCCCCCCCccCceE
Q 036345 638 VNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVYLDYMPKG-IERLTCLRTLRELV 695 (954)
Q Consensus 638 ~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~ 695 (954)
++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|.. +..+++|++|++..
T Consensus 76 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 76 TKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCS
T ss_pred CccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecC
Confidence 999999999998 6777765 68899999999999954 566655 47788888876544
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=8.4e-08 Score=103.87 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=72.9
Q ss_pred CCCCCEEEEeeecCCCCCCcc-hhcccCccEEEEeCcCCCCcCC--CCCCCCCCc-eEeecCCCCceEeCcccccCCCCC
Q 036345 774 NPNIEVLKIFQYKGKTVFPSW-IMSLCKLKVLLLSFCIKCEIMP--PLGKLPSLE-VLSIWNMNSVKTVGDEFLGIGGDN 849 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~c~~~~~l~--~l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~ 849 (954)
+++|++|++.+|.+.. +|.. +..+++|+.|+|.++ ...++ .+..+++|+ .|.+.+ .++.++...+.
T Consensus 225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~----- 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM----- 294 (329)
T ss_dssp CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT-----
T ss_pred cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhh-----
Confidence 6899999999988777 6654 668999999999987 33343 388999999 999987 57888765543
Q ss_pred CCCcCCcccccCcccceeeccccccccccccccccccccccccceecc
Q 036345 850 GTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKI 897 (954)
Q Consensus 850 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l 897 (954)
++++|+.+.+.+. +++.+.. ..+..+++|+.|+.
T Consensus 295 ----------~c~~L~~l~l~~n-~i~~I~~---~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 295 ----------GCDNLRYVLATGD-KITTLGD---ELFGNGVPSKLIYK 328 (329)
T ss_dssp ----------TCTTEEEEEECSS-CCCEECT---TTTCTTCCCCEEEC
T ss_pred ----------CCccCCEEEeCCC-ccCccch---hhhcCCcchhhhcc
Confidence 6888999988542 2333332 33556777777753
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.65 E-value=2.3e-07 Score=102.53 Aligned_cols=195 Identities=15% Similarity=0.207 Sum_probs=114.1
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
.+++|++..++.+...+.... ....+.|+|+.|+||||+|+.+++.......+. ...+..-.....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 569999999999999886532 234788999999999999999876321111000 00000000000000
Q ss_pred HHh-------hcC-CCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh-HH
Q 036345 252 EAL-------EGS-ASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT-VA 321 (954)
Q Consensus 252 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~ 321 (954)
... ... .....+...+...+... ..+++.++|+||+..-+...+..+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01112222222221111 135678999999976555666777777766556677777776443 21
Q ss_pred hh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 322 QM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 322 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
.. ......+++.+++.++..+++.+.+........ .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 223468999999999999999876532111111 3456779999999999876654
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=2.2e-07 Score=100.07 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=112.1
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE-IRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 249 (954)
..+++|++..++.+..++... ....+.++|++|+|||++|+.+++.-. ...+. ..+.++.+....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~------- 81 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG------- 81 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC-------
T ss_pred HHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC-------
Confidence 356999999999998888642 222389999999999999999887310 11111 123333332111
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHH--h-cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh-HHhh-h
Q 036345 250 IIEALEGSASNLGELQSLLQRIQTS--I-AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT-VAQM-M 324 (954)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~ 324 (954)
.............. + .+++.++|+||+..-.......+...+.....++++|+||.... +... .
T Consensus 82 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 82 -----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 01111111111111 1 25678999999965544455566666655556778888876543 2111 1
Q ss_pred cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 325 ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 325 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
.....+++.+++.++..+++...+......-. .+....+++.++|.+..+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22458999999999999999887643322111 3456678899999998655443
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.48 E-value=5e-07 Score=89.17 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=83.5
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc---cc--ccceEEEEEeCCCCCHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV---MN--SFEIRMWVCVSDPFDEFR 245 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~--~f~~~~wv~~s~~~~~~~ 245 (954)
...++||+.+++++.+.+... ..+.+.|+|++|+|||++|+.+++.-.. .. .....+++.++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------ 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------
T ss_pred ccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------
Confidence 356899999999999998642 2345789999999999999998774110 00 112334443211
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHHh--cCceeEEEecCCCCCC--------ccChhhHHhhhcCCCCCcEEEEec
Q 036345 246 VARAIIEALEGSASNLGELQSLLQRIQTSI--AGKKFLLVLDDMWTDD--------YSKWEPFNNCLMNGLRGSKILVTT 315 (954)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iiiTt 315 (954)
+ ................+.+.+ .+++.+|||||+..-. ......+...+.. .+..+|+||
T Consensus 89 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~ 158 (195)
T 1jbk_A 89 L--------VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGAT 158 (195)
T ss_dssp H--------HTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEE
T ss_pred H--------hccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeC
Confidence 1 000001111111122222222 3567899999995431 1112333333322 244567766
Q ss_pred CchhHHhh-------hcCcceEeCCCCCHHHHHHHH
Q 036345 316 RKKTVAQM-------MESTDVFSIKELSKQECWSLF 344 (954)
Q Consensus 316 r~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf 344 (954)
........ ......+.+.+++.++..+++
T Consensus 159 ~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 65543211 122336889999988876654
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.46 E-value=1.3e-05 Score=88.72 Aligned_cols=272 Identities=14% Similarity=0.215 Sum_probs=145.8
Q ss_pred cCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhhccCcCceeeccCccccccc-ccc
Q 036345 557 AKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLEELP-ETC 634 (954)
Q Consensus 557 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i 634 (954)
+..++.+.+...- ..+-...|.++ .|+.+.+..+ +..+++ .+.+ .+|+.+.+.. .++.++ ..+
T Consensus 112 ~~~l~~i~ip~~i-----~~I~~~aF~~~-~L~~i~l~~~-------i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 112 LKGYNEIILPNSV-----KSIPKDAFRNS-QIAKVVLNEG-------LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp CSSCSEEECCTTC-----CEECTTTTTTC-CCSEEECCTT-------CCEECTTTTTT-CCCCEEECCT-TCCEECSSTT
T ss_pred cCCccEEEECCcc-----CEehHhhcccC-CccEEEeCCC-------ccEECHHhcCC-CCceEEEeCC-CccEehHHHh
Confidence 4555555554432 22223445554 5777777543 444543 3444 3577777765 555554 346
Q ss_pred cCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCC-CCCCCCCCCccCceEecCCccCcccccccccCC
Q 036345 635 CELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPK-GIERLTCLRTLRELVVSRKGCNLGGLRHLNHLR 713 (954)
Q Consensus 635 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~l~~l~~L~~L~ 713 (954)
..+.+|+.+++..+. +..+|.......+|+.+.+..+ +..++. .+..+++|+.+.+-.
T Consensus 177 ~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~------------------ 235 (401)
T 4fdw_A 177 YYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE------------------ 235 (401)
T ss_dssp TTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT------------------
T ss_pred hCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC------------------
Confidence 677777777777665 6666665444667777776543 233332 234444444432100
Q ss_pred ceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCCCC-C
Q 036345 714 GSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKTVF-P 792 (954)
Q Consensus 714 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l-p 792 (954)
++..+.. . .+.. .+|+.+.+.+ .... + +
T Consensus 236 ---------~l~~I~~---~------------------------------------aF~~-~~L~~i~lp~-~i~~-I~~ 264 (401)
T 4fdw_A 236 ---------NVSTIGQ---E------------------------------------AFRE-SGITTVKLPN-GVTN-IAS 264 (401)
T ss_dssp ---------TCCEECT---T------------------------------------TTTT-CCCSEEEEET-TCCE-ECT
T ss_pred ---------CccCccc---c------------------------------------cccc-CCccEEEeCC-CccE-ECh
Confidence 0000000 0 0111 2344444421 1112 2 3
Q ss_pred cchhcccCccEEEEeCcCCC----CcC--CCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccce
Q 036345 793 SWIMSLCKLKVLLLSFCIKC----EIM--PPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLKE 866 (954)
Q Consensus 793 ~~~~~l~~L~~L~L~~c~~~----~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~~ 866 (954)
..+..|++|+.+.+.++... ..+ ..+..|++|+.+.|.+ .++.++...+. ++++|+.
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~---------------~c~~L~~ 327 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG---------------GNRKVTQ 327 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT---------------TCCSCCE
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc---------------CCCCccE
Confidence 34456777777777765443 112 2377888888888874 36777665442 5677888
Q ss_pred eeccccccccccccccccccccccccceecccccccCcCCCCC-CCCC-CCcceEEEecCcchhhhhccCCCCCccccc
Q 036345 867 LAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQ-LLRS-TTLENLEIKKCPIVKESFRRYTREDWSKMF 943 (954)
Q Consensus 867 L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~-~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~ 943 (954)
+.|.. +++.+.. ..+..+ +|+.|.+.++. +..++.+ +..+ ..++.|++-.+. .+.... ...|...+
T Consensus 328 l~lp~--~l~~I~~---~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~--a~~W~~f~ 395 (401)
T 4fdw_A 328 LTIPA--NVTQINF---SAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAES--VEKYKN--ANGWRDFT 395 (401)
T ss_dssp EEECT--TCCEECT---TSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGG--HHHHHH--STTGGGGG
T ss_pred EEECc--cccEEcH---HhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHH--HHHhhh--ccchhhhh
Confidence 88753 2444432 335567 89999998874 5555543 3445 378889987654 233322 34576543
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.45 E-value=2.9e-07 Score=94.60 Aligned_cols=174 Identities=14% Similarity=0.067 Sum_probs=99.5
Q ss_pred Cceeech---hhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRD---EEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
.+++|.+ ..++.+..+.... ..+.+.|+|++|+||||||+.+++. .......+.|+.++.-.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 4577633 4455555555421 3457889999999999999999874 3222334567765431100
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccC--hhhHHhhhcCC-CCC-cEEEEecCchh-----
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSK--WEPFNNCLMNG-LRG-SKILVTTRKKT----- 319 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~iiiTtr~~~----- 319 (954)
+ . ..+ +.+ .++-+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~-------~------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----S-------T------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----C-------G------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----H-------H------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 0 000 011 346789999996543222 23344433221 122 24777776322
Q ss_pred ----HHhhhcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 320 ----VAQMMESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 320 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
+...+.....+++.+++.++..+++...+..... ... .+....+++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 2222222368999999999999999887642221 111 4556678899999887765543
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.6e-06 Score=94.89 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=113.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE-IRMWVCVSDPFDEFRVARA 249 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~ 249 (954)
-.+++|++..++.+..++.... ...+.|+|++|+||||+|+.+++.-.....+. ..+.+..+....... +.+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VRE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHH
Confidence 3579999999999999986432 22388999999999999999987411111111 223344333223222 222
Q ss_pred HHHHhhcCCC-CcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh-HHhh-hcC
Q 036345 250 IIEALEGSAS-NLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT-VAQM-MES 326 (954)
Q Consensus 250 i~~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~-~~~ 326 (954)
.+..+..... ..... .....-.+++-+|++|++..-.......+...+.......++|++|.... +... ...
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 2222221110 00000 00011123556999999965554455666666655555667777765432 2111 112
Q ss_pred cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 327 TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 327 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
...+.+.+++.++....+.+.+......-. .+..+.|++.++|.|..+..+
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 347899999999999999887643221111 455677999999999875444
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=5e-06 Score=91.89 Aligned_cols=222 Identities=10% Similarity=0.137 Sum_probs=138.5
Q ss_pred cccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhhhccCcCceeeccCccccccc
Q 036345 553 SIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEIEKLKHLRFLKLSQVDLEELP 631 (954)
Q Consensus 553 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp 631 (954)
.|.++ +|+.+.+..+- ..+-...|.++ .|+.+.+.. .+..++ ..+.++.+|+.++++.|.++.+|
T Consensus 131 aF~~~-~L~~i~l~~~i-----~~I~~~aF~~~-~L~~i~lp~-------~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~ 196 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEGL-----KSIGDMAFFNS-TVQEIVFPS-------TLEQLKEDIFYYCYNLKKADLSKTKITKLP 196 (401)
T ss_dssp TTTTC-CCSEEECCTTC-----CEECTTTTTTC-CCCEEECCT-------TCCEECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred hcccC-CccEEEeCCCc-----cEECHHhcCCC-CceEEEeCC-------CccEehHHHhhCcccCCeeecCCCcceEec
Confidence 44554 79999987652 33334556664 699999975 355664 45889999999999999999999
Q ss_pred ccccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccccCCCC-CCCCCCCCccCceEecCCccCccccccc
Q 036345 632 ETCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDYMPKG-IERLTCLRTLRELVVSRKGCNLGGLRHL 709 (954)
Q Consensus 632 ~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~l~~l~~L 709 (954)
...-...+|+.+.+..+ +..++. .+..+++|+.+.+..+ +..++.. +.. .+|+.+.
T Consensus 197 ~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~----------------- 254 (401)
T 4fdw_A 197 ASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVK----------------- 254 (401)
T ss_dssp TTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEE-----------------
T ss_pred hhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEE-----------------
Confidence 88777899999999853 666664 4778999999998764 3444332 222 3333332
Q ss_pred ccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeeecCCC
Q 036345 710 NHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQYKGKT 789 (954)
Q Consensus 710 ~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 789 (954)
+. .+ +.......+..|++|+.+.+..+...... ....-...+..|++|+.+.+.++ +..
T Consensus 255 --------lp--~~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~-------~~~I~~~aF~~c~~L~~l~l~~~-i~~ 313 (401)
T 4fdw_A 255 --------LP--NG---VTNIASRAFYYCPELAEVTTYGSTFNDDP-------EAMIHPYCLEGCPKLARFEIPES-IRI 313 (401)
T ss_dssp --------EE--TT---CCEECTTTTTTCTTCCEEEEESSCCCCCT-------TCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred --------eC--CC---ccEEChhHhhCCCCCCEEEeCCccccCCc-------ccEECHHHhhCCccCCeEEeCCc-eEE
Confidence 10 01 11112234566788888888766432000 00001234566778888877632 333
Q ss_pred CC-CcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCC
Q 036345 790 VF-PSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMN 833 (954)
Q Consensus 790 ~l-p~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~ 833 (954)
+ ...+..|++|+.|.|..+-..-.-..+..+ +|+.|.+.++.
T Consensus 314 -I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 314 -LGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -ECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSS
T ss_pred -EhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCC
Confidence 3 334556788888888655211112236677 88888888775
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.41 E-value=4.4e-07 Score=99.08 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=45.4
Q ss_pred hcCCCceeEEEecC-CCccccccccccc-hhhhccCcCceeeccCcccccccc-cccCCCCccEEeccccCCCccccccc
Q 036345 582 FDQLTFLRTLKITG-ESAGVEKSIREIP-KEIEKLKHLRFLKLSQVDLEELPE-TCCELVNLQTLDIEACGSLKRLPQGI 658 (954)
Q Consensus 582 ~~~l~~Lr~L~L~~-~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i 658 (954)
+..++.|+.|+|++ | .+..+| ..|++|.+|++|+|++|.|+.+|+ .+..|++|++|+|++|. +..+|..+
T Consensus 27 l~~~~~L~~L~l~~~n------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~ 99 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKT 99 (347)
T ss_dssp SCSCSCCSEEECCSCS------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred CCCCCCeeEEEccCCC------CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHH
Confidence 55555566666654 5 444444 345556666666666666555433 34556666666666555 45555443
Q ss_pred cCCCCCCEEeccCc
Q 036345 659 GKLVNLRHLMISHN 672 (954)
Q Consensus 659 ~~l~~L~~L~l~~~ 672 (954)
....+|+.|++.+|
T Consensus 100 ~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 100 VQGLSLQELVLSGN 113 (347)
T ss_dssp TCSCCCCEEECCSS
T ss_pred cccCCceEEEeeCC
Confidence 33333666666555
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.38 E-value=5.2e-06 Score=90.04 Aligned_cols=179 Identities=14% Similarity=0.113 Sum_probs=106.6
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
..+++|++..++++..++...... ......|.|+|++|+|||++|+.+++. .... .+.+..+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc--------
Confidence 467999999999998888753210 123345899999999999999999873 2222 22333322111
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC------------------CCcEEE
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL------------------RGSKIL 312 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii 312 (954)
.......+.. ..+..+|+||++..........+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111111 2456789999996554444445555444321 124566
Q ss_pred EecCchh-HHhh-hcC-cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 313 VTTRKKT-VAQM-MES-TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 313 iTtr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
.||.... +... ... ...+.+.+++.++...++.+.+...... --.+....|++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT----CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 6665432 1111 111 3589999999999999998876432211 114556778889999996655443
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=4.5e-07 Score=98.99 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=84.3
Q ss_pred EEEEec-cccCCcccccccCcceEEEeec-cCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhhhccCc
Q 036345 540 LMLMIN-LFSTFPVSIRYAKKLRSLFLVA-NGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEIEKLKH 616 (954)
Q Consensus 540 L~l~~~-~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~ 616 (954)
++++++ .+..+|. +..+++|+.|+|++ |. +....+..|.++++|++|+|++| .+..+| ..|++|++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~----l~~~~~~~~~~l~~L~~L~l~~N------~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH----LQHLELRDLRGLGELRNLTIVKS------GLRFVAPDAFHFTPR 81 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS----CCEECGGGSCSCCCCSEEECCSS------CCCEECTTGGGSCSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC----CCCcChhHhccccCCCEEECCCC------ccceeCHHHhcCCcC
Confidence 566666 7888898 99999999999996 76 55555677999999999999999 777775 46899999
Q ss_pred CceeeccCcccccccccccCCCCccEEeccccC
Q 036345 617 LRFLKLSQVDLEELPETCCELVNLQTLDIEACG 649 (954)
Q Consensus 617 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 649 (954)
|++|+|++|.+..+|..+.....|++|+|.+|.
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 999999999999999876655569999999987
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.34 E-value=4.4e-06 Score=93.21 Aligned_cols=180 Identities=19% Similarity=0.221 Sum_probs=103.7
Q ss_pred CCceeechhhh---hHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHH
Q 036345 171 VSEVRGRDEEK---NSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVA 247 (954)
Q Consensus 171 ~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 247 (954)
-.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. ....| +.++......+-+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~i 91 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEI 91 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHH
Confidence 35789998877 6677777643 3467899999999999999999883 22222 2222211111111
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEE-ecCchh--H-Hhh
Q 036345 248 RAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILV-TTRKKT--V-AQM 323 (954)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii-Ttr~~~--v-~~~ 323 (954)
..++... ......+++.+|+||++..-.....+.+...+..+ ...+|. ||.+.. + ...
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 1111110 11112467889999999776555666666666552 233443 554432 1 111
Q ss_pred hcCcceEeCCCCCHHHHHHHHHHHHcCCCCC---CCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 324 MESTDVFSIKELSKQECWSLFKRFAFFGRHP---SECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 324 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
......+.+++++.++...++.+.+...... ....--.+....|++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2334588999999999999998876431110 111122456677888899988765544
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=5.9e-06 Score=92.41 Aligned_cols=161 Identities=13% Similarity=0.124 Sum_probs=96.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccc--eEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE--IRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
...+.|+|++|+||||||+.+++. ....+. .+++++.. .+..++...+... .. ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 557899999999999999999883 333321 24455433 3444455444332 11 12333334
Q ss_pred CceeEEEecCCCCCCc--cChhhHHhhhcC-CCCCcEEEEecCch---------hHHhhhcCcceEeCCCCCHHHHHHHH
Q 036345 277 GKKFLLVLDDMWTDDY--SKWEPFNNCLMN-GLRGSKILVTTRKK---------TVAQMMESTDVFSIKELSKQECWSLF 344 (954)
Q Consensus 277 ~kr~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 344 (954)
.+.-+|+|||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3677999999954322 222334444322 23567888888752 22333333467899999999999999
Q ss_pred HHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 345 KRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
.+.+..... ..+ .++...|++.++|.+-.+..
T Consensus 273 ~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHH
Confidence 887642211 111 23456688899998865543
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=5.1e-05 Score=84.09 Aligned_cols=305 Identities=12% Similarity=0.082 Sum_probs=159.1
Q ss_pred ccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhhccCcCceeeccCcccccc
Q 036345 552 VSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLEEL 630 (954)
Q Consensus 552 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l 630 (954)
..|.+|.+|+++.+..+ +..+-...|.+|..|+.+++..+ +..+++ .+.++..|+.+.+..+ +..+
T Consensus 65 ~AF~~c~~L~~i~lp~~-----i~~I~~~aF~~c~~L~~i~lp~~-------l~~I~~~aF~~c~~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-----VREIGEFAFENCSKLEIINIPDS-------VKMIGRCTFSGCYALKSILLPLM-LKSI 131 (394)
T ss_dssp TTTTTCTTEEEEECCTT-----CCEECTTTTTTCTTCCEECCCTT-------CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred HHhhCCCCceEEEeCCC-----ccCcchhHhhCCCCCcEEEeCCC-------ceEccchhhcccccchhhcccCc-eeee
Confidence 45778889999988643 23333456888899999988643 445543 4677778877776543 3322
Q ss_pred c-ccccCCCCccEEeccccCCCcccc-ccccCCCCCCEEeccCccccccCC-CCCCCCCCCCccCceEecC--CccCccc
Q 036345 631 P-ETCCELVNLQTLDIEACGSLKRLP-QGIGKLVNLRHLMISHNVYLDYMP-KGIERLTCLRTLRELVVSR--KGCNLGG 705 (954)
Q Consensus 631 p-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~--~~~~l~~ 705 (954)
+ ..+..+..+........ ..+. ..+..+.+|+.+.+..+. ..++ ..+..+.+|+.+.+-..-. .......
T Consensus 132 ~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~ 206 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAE 206 (394)
T ss_dssp CTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTT
T ss_pred cceeeecccccccccCccc---cccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCCceEeCchhhcc
Confidence 2 22333333333333222 1222 335667777777775431 2233 2345555555553311000 0112222
Q ss_pred ccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCCCCCCCEEEEeee
Q 036345 706 LRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRPNPNIEVLKIFQY 785 (954)
Q Consensus 706 l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 785 (954)
+..|..+.. . ...... ......+.+|+.+.+...... . -...+..+.+|+.+.+..+
T Consensus 207 ~~~L~~i~~----~--~~~~~i----~~~~~~~~~l~~i~ip~~~~~-i------------~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 207 CILLENMEF----P--NSLYYL----GDFALSKTGVKNIIIPDSFTE-L------------GKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CTTCCBCCC----C--TTCCEE----CTTTTTTCCCCEEEECTTCCE-E------------CSSTTTTCSSCCEEEECCT
T ss_pred ccccceeec----C--CCceEe----ehhhcccCCCceEEECCCcee-c------------ccccccccccceeEEcCCC
Confidence 233322210 0 000000 011123456666665422110 0 0112445667777777554
Q ss_pred cCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCCCcCCcccccCcccc
Q 036345 786 KGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGTSATSSVNVAFRKLK 865 (954)
Q Consensus 786 ~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~L~ 865 (954)
...- -...+..+..|+.+.+...... -..+..+.+|+.+.+.++ ++.++...+. .+.+|+
T Consensus 264 ~~~i-~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF~---------------~c~~L~ 323 (394)
T 4fs7_A 264 KLRI-GGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--VKFIGEEAFE---------------SCTSLV 323 (394)
T ss_dssp TCEE-CSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--CCEECTTTTT---------------TCTTCC
T ss_pred ccee-eccccccccccceeccCceeec--cccccccccccccccccc--cceechhhhc---------------CCCCCC
Confidence 3211 2333446677777776554311 123567788888888653 6667654332 567788
Q ss_pred eeeccccccccccccccccccccccccceecccccccCcCCCC-CCCCCCCcceEEEecC
Q 036345 866 ELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPD-QLLRSTTLENLEIKKC 924 (954)
Q Consensus 866 ~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 924 (954)
.+.|.+ +++.+.. ..+..+.+|+.+.+..+ ++.++. .+.+|++|+.+++..+
T Consensus 324 ~i~lp~--~v~~I~~---~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 324 SIDLPY--LVEEIGK---RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECCCT--TCCEECT---TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEEeCC--cccEEhH---HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 887753 2343332 33556788888888654 666655 3567889999998654
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.27 E-value=1.2e-05 Score=84.90 Aligned_cols=186 Identities=15% Similarity=0.144 Sum_probs=102.2
Q ss_pred cCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
...+++|.+..+++|.+.+...... .-...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~- 88 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV- 88 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH-
Confidence 3467999999999998877542000 0013346899999999999999999873 2221 2223322210
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHH-HHHHHHHHhcCceeEEEecCCCCC-----------CccChhhHHhhh---c--CC
Q 036345 243 EFRVARAIIEALEGSASNLGELQS-LLQRIQTSIAGKKFLLVLDDMWTD-----------DYSKWEPFNNCL---M--NG 305 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l---~--~~ 305 (954)
.. ....... ....+......++.+|+|||+..- +......+...+ . ..
T Consensus 89 -------------~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 -------------KK--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------CC--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------Hh--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 00 0111112 222223333456689999999431 111112232222 2 12
Q ss_pred CCCcEEEEecCchhHHh-h-hc---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHH
Q 036345 306 LRGSKILVTTRKKTVAQ-M-ME---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG-LPLAAK 379 (954)
Q Consensus 306 ~~gs~iiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~ 379 (954)
..+..||.||....... . .. -...+.++..+.++..+++...+..... .....+ ..+++.+.| .|-.+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~----~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVNL----EEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCCH----HHHHHHcCCCCHHHHH
Confidence 34667778887543221 1 11 1347899999999999999887643221 112223 447777777 454444
Q ss_pred HH
Q 036345 380 TI 381 (954)
Q Consensus 380 ~~ 381 (954)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=3.5e-06 Score=92.13 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=107.3
Q ss_pred CCceeechhhhhHHHHHh-hccCCCCCCceEEEEEEecCCchHHHHHHHHhcC---ccccc-ccc---------------
Q 036345 171 VSEVRGRDEEKNSLKSKL-LCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND---NDVMN-SFE--------------- 230 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~---~~~~~-~f~--------------- 230 (954)
-.+++|.+..++.+..++ ... .... +.|+|+.|+||||+|+.+++. +.... .++
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred HHHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 356899999888888877 322 1223 899999999999999887662 11000 000
Q ss_pred -----eEEEEEeCCCC-CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcC
Q 036345 231 -----IRMWVCVSDPF-DEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMN 304 (954)
Q Consensus 231 -----~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 304 (954)
..+.+..+... .......+++..+.....- .... .+. .+.+++-++|+|++..-+......+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 01111111100 0000122333322211000 0000 000 0234667999999976555556667666655
Q ss_pred CCCCcEEEEecCchh-HHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 305 GLRGSKILVTTRKKT-VAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 305 ~~~gs~iiiTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
...+..+|++|.... +... ......+++.+++.++..+.+.+.+......-.. .+....|++.++|.+-.+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 445677888776532 2221 2234689999999999999998766322211110 2345678899999887665443
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.25 E-value=1.3e-05 Score=88.05 Aligned_cols=200 Identities=12% Similarity=0.064 Sum_probs=107.2
Q ss_pred CCceeechhhhhHH---HHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEe----CCCCCH
Q 036345 171 VSEVRGRDEEKNSL---KSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCV----SDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----s~~~~~ 243 (954)
..+++|++..++.+ .+.+.... ...+.+.|+|++|+|||++|+.+++. ...... .+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccch
Confidence 45799999887764 44444322 12357899999999999999999874 222111 122221 223344
Q ss_pred HHHHHHHHHHhhcC---------------------C-------CC--cccHHHHHHHHHHHh-----cCc----eeEEEe
Q 036345 244 FRVARAIIEALEGS---------------------A-------SN--LGELQSLLQRIQTSI-----AGK----KFLLVL 284 (954)
Q Consensus 244 ~~~~~~i~~~l~~~---------------------~-------~~--~~~~~~~~~~l~~~l-----~~k----r~LlVl 284 (954)
...+.+..+..... . .. ......+...+.+.. .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 44444444331110 0 00 000112222222211 233 359999
Q ss_pred cCCCCCCccChhhHHhhhcCCCCCcEEEEecCc-------------hhH-HhhhcCcceEeCCCCCHHHHHHHHHHHHcC
Q 036345 285 DDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK-------------KTV-AQMMESTDVFSIKELSKQECWSLFKRFAFF 350 (954)
Q Consensus 285 Ddvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~-------------~~v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 350 (954)
|++..-.......+...+...... .++++|.. ..+ .........+.+.+++.++..+++.+.+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999665555555566555443333 34444431 111 111122345899999999999999987643
Q ss_pred CCCCCCchhHHHHHHHHHHhcC-CChHHHHHHH
Q 036345 351 GRHPSECEQLEEIGRKIVSRCK-GLPLAAKTIG 382 (954)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~~c~-glPlai~~~~ 382 (954)
....- -.+....|++.+. |.|-.+..+.
T Consensus 275 ~~~~~----~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 275 EDVEM----SEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TTCCB----CHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCCC----CHHHHHHHHHHhcCCCHHHHHHHH
Confidence 22211 1345667888887 7776655443
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.24 E-value=8.3e-06 Score=84.83 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=99.7
Q ss_pred CCceeechhhhhHHHHHhhccCCC------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.+++|.+..++.+.+++...... .....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh--
Confidence 457899998887776654321110 0123456889999999999999999883 2222 23444433111
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCC------------CccChhh---HHhhhcC--CCC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD------------DYSKWEP---FNNCLMN--GLR 307 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------------~~~~~~~---l~~~l~~--~~~ 307 (954)
. ........+...+.......+.+|+|||+..- +...... +...+.. ...
T Consensus 78 ------------~-~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 ------------V-IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp ------------S-STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred ------------h-ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 00011112222233333456789999999542 1111222 2222222 223
Q ss_pred CcEEEEecCchhHH-hh-hc--C-cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHH
Q 036345 308 GSKILVTTRKKTVA-QM-ME--S-TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTI 381 (954)
Q Consensus 308 gs~iiiTtr~~~v~-~~-~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 381 (954)
+..||.||...... .. .. . ...+.+...+.++..+++.+.+..... .. ........+++.+.|.+- .+..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Cc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 55666677554321 11 11 1 357889999999999999887643221 11 112234678888888754 44444
No 176
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=2.1e-07 Score=101.97 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=38.9
Q ss_pred CceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccc-----cccc-cCCCCccEEeccccCCCc-----cc
Q 036345 586 TFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEEL-----PETC-CELVNLQTLDIEACGSLK-----RL 654 (954)
Q Consensus 586 ~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-----p~~i-~~L~~L~~L~L~~~~~l~-----~l 654 (954)
+.|+.|+|++|.+.. ..+..-...+.+|++|+|++|.+... ...+ ...++|++|+|++|. +. .+
T Consensus 101 ~~L~~L~Ls~n~l~~----~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQLDP----AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCCCCH----HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHH
T ss_pred CCceEEEecCCCCCH----HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHH
Confidence 466666666662210 00111122345566666666665421 1112 234556666666665 32 23
Q ss_pred cccccCCCCCCEEeccCc
Q 036345 655 PQGIGKLVNLRHLMISHN 672 (954)
Q Consensus 655 p~~i~~l~~L~~L~l~~~ 672 (954)
+..+..+++|++|++++|
T Consensus 176 ~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp HHHHHTCSSCCEEECTTS
T ss_pred HHHHhcCCCcCEEeCCCC
Confidence 333445555666666555
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=8.7e-06 Score=93.36 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=107.6
Q ss_pred CCceeechhhhhHHHHHhhccCC-----------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESS-----------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD 239 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 239 (954)
..+++|++..++++..++..... ...+..+.+.|+|++|+||||+|+.+++. . .+ .++.++++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCCC
Confidence 35799999999999999865210 00113468999999999999999999884 2 12 234455544
Q ss_pred CCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHH--hcCceeEEEecCCCCCCccC---hhhHHhhhcCCCCCcEEEEe
Q 036345 240 PFDEFRVARAIIEALEGSASNLGELQSLLQRIQTS--IAGKKFLLVLDDMWTDDYSK---WEPFNNCLMNGLRGSKILVT 314 (954)
Q Consensus 240 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdvw~~~~~~---~~~l~~~l~~~~~gs~iiiT 314 (954)
..... ++...+....... ..........+. ..+++.+||||++..-.... +..+...+... +..||++
T Consensus 113 ~~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred cchHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence 33332 2222222211110 000000000001 23567899999995432222 24444444332 2335544
Q ss_pred cCchh---HHhhhcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh-HHHHHHH
Q 036345 315 TRKKT---VAQMMESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP-LAAKTIG 382 (954)
Q Consensus 315 tr~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 382 (954)
+.... +.........+.+++++.++..+++...+......-.+ +....|++.++|.+ .++..+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 43322 22222224579999999999999988766432221222 23556889999954 4555543
No 178
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.18 E-value=5.1e-07 Score=98.89 Aligned_cols=135 Identities=18% Similarity=0.183 Sum_probs=90.0
Q ss_pred CCceEEEEEEeccccC--CcccccccCcceEEEeeccCCccccCCC----chhhh-cCCCceeEEEecCCCccccccccc
Q 036345 534 KEKLYHLMLMINLFST--FPVSIRYAKKLRSLFLVANGSFKVLSPV----LPGLF-DQLTFLRTLKITGESAGVEKSIRE 606 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~----~~~~~-~~l~~Lr~L~L~~~~~~~~~~l~~ 606 (954)
..+++.|+++.|.+.. ...-...+++|+.|++++|. +... +...+ ...+.|+.|+|++|.+.. .....
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~----l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~ 174 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS----LGPEACKDLRDLLLHDQCQITTLRLSNNPLTA-AGVAV 174 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC----CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH-HHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC----CCHHHHHHHHHHHHhcCCccceeeCCCCCCCh-HHHHH
Confidence 3578888888887753 11122345678888888886 3221 11222 346788888888884321 12334
Q ss_pred cchhhhccCcCceeeccCcccc-----cccccccCCCCccEEeccccCCCc-----cccccccCCCCCCEEeccCccc
Q 036345 607 IPKEIEKLKHLRFLKLSQVDLE-----ELPETCCELVNLQTLDIEACGSLK-----RLPQGIGKLVNLRHLMISHNVY 674 (954)
Q Consensus 607 lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~ 674 (954)
++..+..+++|++|+|++|.|. .++..+..+++|++|+|++|. +. .++..+...++|++|++++|..
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 5666778888888998888876 346667777888889988887 43 3444556678888888888854
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.15 E-value=3.2e-05 Score=83.34 Aligned_cols=170 Identities=10% Similarity=0.039 Sum_probs=102.6
Q ss_pred hhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc---cc-----------------cccceEEEEEeC
Q 036345 179 EEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND---VM-----------------NSFEIRMWVCVS 238 (954)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~-----------------~~f~~~~wv~~s 238 (954)
...+.+...+... .-...+.++|+.|+||||+|+.+.+.-. .. .+++ ..++...
T Consensus 9 ~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~ 82 (334)
T 1a5t_A 9 PDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCC
T ss_pred HHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecc
Confidence 4455666666532 2345789999999999999988865311 00 1122 2233221
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh-----cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEE
Q 036345 239 DPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSI-----AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILV 313 (954)
Q Consensus 239 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iii 313 (954)
. .......+...+ +.+.+ .+++-++|+|++..-.....+.+...+.....++.+|+
T Consensus 83 ~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 83 K------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp T------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred c------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 001112222222 22222 25677999999976555566677777766556777777
Q ss_pred ecCchh-HHhh-hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 314 TTRKKT-VAQM-MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 314 Ttr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
+|.... +... ......+++.+++.++..+.+.+.. ... .+....+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 776543 2222 2335689999999999999998764 111 3445679999999998765543
No 180
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.14 E-value=7.1e-05 Score=82.95 Aligned_cols=316 Identities=9% Similarity=0.046 Sum_probs=170.4
Q ss_pred CCceEEEEEEeccccCC-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccc-hhh
Q 036345 534 KEKLYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIP-KEI 611 (954)
Q Consensus 534 ~~~lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i 611 (954)
-.+++.+.+..+ +..+ ...|.+|++|+.+.+..+- ..+-...|.++..|+.+.+..+ +..+. ..+
T Consensus 70 c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l-----~~I~~~aF~~c~~L~~i~~p~~-------l~~i~~~aF 136 (394)
T 4fs7_A 70 CRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV-----KMIGRCTFSGCYALKSILLPLM-------LKSIGVEAF 136 (394)
T ss_dssp CTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC-----CEECTTTTTTCTTCCCCCCCTT-------CCEECTTTT
T ss_pred CCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc-----eEccchhhcccccchhhcccCc-------eeeecceee
Confidence 356777777533 3333 3467889999999997542 2223455788888887766543 23332 224
Q ss_pred hccCcCceeeccCcccccc-cccccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCccccccCC-CCCCCCCCC
Q 036345 612 EKLKHLRFLKLSQVDLEEL-PETCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHNVYLDYMP-KGIERLTCL 688 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~L~~L 688 (954)
.++..+....... +..+ ...+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++ ..+..+..|
T Consensus 137 ~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 137 KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILL 210 (394)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTC
T ss_pred ecccccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhcccccc
Confidence 4443333332221 1222 234667788888888653 344443 3566777887777654 23332 234555555
Q ss_pred CccCceEecCC-ccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHH
Q 036345 689 RTLRELVVSRK-GCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEAT 767 (954)
Q Consensus 689 ~~L~~~~~~~~-~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 767 (954)
+.+........ +...-....|. .+.+.. .+ ..........+.+|+.+.+..+...- .
T Consensus 211 ~~i~~~~~~~~i~~~~~~~~~l~----~i~ip~--~~---~~i~~~~f~~~~~l~~~~~~~~~~~i-------------~ 268 (394)
T 4fs7_A 211 ENMEFPNSLYYLGDFALSKTGVK----NIIIPD--SF---TELGKSVFYGCTDLESISIQNNKLRI-------------G 268 (394)
T ss_dssp CBCCCCTTCCEECTTTTTTCCCC----EEEECT--TC---CEECSSTTTTCSSCCEEEECCTTCEE-------------C
T ss_pred ceeecCCCceEeehhhcccCCCc----eEEECC--Cc---eecccccccccccceeEEcCCCccee-------------e
Confidence 55432211100 11111111222 222211 11 11122334567778888775442210 1
Q ss_pred hhcCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcC--CCCCCCCCCceEeecCCCCceEeCcccccC
Q 036345 768 SEALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIM--PPLGKLPSLEVLSIWNMNSVKTVGDEFLGI 845 (954)
Q Consensus 768 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 845 (954)
...+..+..++.+......+. ...+..+.+|+.+.+.++ ...+ ..+..+.+|+.+.|.+ .++.++...+.
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~- 340 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR- 340 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-
T ss_pred ccccccccccceeccCceeec---cccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhcc-
Confidence 123455677777766544321 123446788999988765 2222 2377889999998864 36777654432
Q ss_pred CCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceE
Q 036345 846 GGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENL 919 (954)
Q Consensus 846 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L 919 (954)
++.+|+.+.|.. +++.+.. ..+..+++|+.+++... ++.+...+.++++|+.+
T Consensus 341 --------------~c~~L~~i~lp~--~l~~I~~---~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 --------------GCTSLSNINFPL--SLRKIGA---NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp --------------TCTTCCEECCCT--TCCEECT---TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred --------------CCCCCCEEEECc--cccEehH---HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 567788887753 2344432 33557888888888654 44444556667777665
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.12 E-value=1.6e-05 Score=85.62 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=103.1
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
-.+++|.+..++.+..++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+. .. ...+...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~-~~~i~~~ 92 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CK-IDFVRGP 92 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CC-HHHHHTH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cC-HHHHHHH
Confidence 4679999999999999987432 3457888899999999999999873 21 2234455433 22 2222222
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC-ccChhhHHhhhcCCCCCcEEEEecCchh-HHhhh-cCc
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD-YSKWEPFNNCLMNGLRGSKILVTTRKKT-VAQMM-EST 327 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~~-~~~ 327 (954)
+....... ...+++-+||+||+..-. ....+.+...+.....+.++|+||.... +...+ ...
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 22211100 012467899999996544 3445556555544345667888876543 11111 113
Q ss_pred ceEeCCCCCHHHHHHHHH-------HHHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 328 DVFSIKELSKQECWSLFK-------RFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 328 ~~~~l~~L~~~~~~~lf~-------~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
..+++++++.++..+++. ..+..... ..++ .+....|++.++|.+..+
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHH
Confidence 479999999888544332 22211111 1111 255667888898876643
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.10 E-value=4.3e-05 Score=82.11 Aligned_cols=156 Identities=17% Similarity=0.104 Sum_probs=88.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGK 278 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 278 (954)
...+.|+|++|+||||||+.+++. ....-..++++++ ..+...+...+... .... +.... .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~~----~~~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG-----TINE----FRNMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHHH----HHHHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHh-cC
Confidence 456889999999999999999874 2111123445543 23344444443321 1111 22222 23
Q ss_pred eeEEEecCCCCCCc--cChhhHHhhhcC-CCCCcEEEEecCch---------hHHhhhcCcceEeCCCCCHHHHHHHHHH
Q 036345 279 KFLLVLDDMWTDDY--SKWEPFNNCLMN-GLRGSKILVTTRKK---------TVAQMMESTDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 279 r~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iiiTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 346 (954)
.-+|+|||+..-.. .....+...+.. ...|..||+||... .+...+.....+++++ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 67999999954322 112334333322 12456788877532 1222233335789999 99999999988
Q ss_pred HHcCCCCCCCchhHHHHHHHHHHhcCCChHHH
Q 036345 347 FAFFGRHPSECEQLEEIGRKIVSRCKGLPLAA 378 (954)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 378 (954)
.+..... ..+ .++...|++.+ |..-.+
T Consensus 178 ~~~~~~~-~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 178 KLKEFNL-ELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHTTC-CCC---HHHHHHHHHHC-SSHHHH
T ss_pred HHHhcCC-CCC---HHHHHHHHHhC-CCHHHH
Confidence 7643222 111 34556788888 766543
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=3e-07 Score=99.80 Aligned_cols=143 Identities=20% Similarity=0.075 Sum_probs=80.7
Q ss_pred cCCCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCc-CCCC--CCCCCCceEeecCCCCceEeCcc-cccC
Q 036345 770 ALRPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEI-MPPL--GKLPSLEVLSIWNMNSVKTVGDE-FLGI 845 (954)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~-l~~l--~~l~~L~~L~L~~~~~l~~~~~~-~~~~ 845 (954)
.+.++|+|++|.|.++.+.. +|. + .+++|++|+|..|.+... +..+ ..+|+|+.|+|+.+... ..+.. +...
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~-~~~~~~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED-YGFDGDMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG-GTCCSCGGGT
T ss_pred HHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc-cccchhHHHH
Confidence 34566788888888775444 554 3 377888888887764322 2222 36788888888642211 00000 0000
Q ss_pred CCCCCCCcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcC-----CCCCCCCCCCcceEE
Q 036345 846 GGDNGTSATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKS-----LPDQLLRSTTLENLE 920 (954)
Q Consensus 846 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~ 920 (954)
.. ......||+|+.|.+.+|.-........ .....+|+|++|+|+.|. +.. ++.++.++++|+.|+
T Consensus 243 ~~-------~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 243 RP-------LFSKDRFPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp GG-------GSCTTTCTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEE
T ss_pred HH-------HHhcCCCCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEE
Confidence 00 0001258888888887765322111110 011357888888887763 542 455555678888888
Q ss_pred EecCc
Q 036345 921 IKKCP 925 (954)
Q Consensus 921 l~~c~ 925 (954)
+++|.
T Consensus 314 L~~n~ 318 (362)
T 2ra8_A 314 MKYNY 318 (362)
T ss_dssp CCSBB
T ss_pred CCCCc
Confidence 88886
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.06 E-value=1.9e-05 Score=84.32 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=89.0
Q ss_pred ceeechhhhhHHHHHhhccC---------CCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 173 EVRGRDEEKNSLKSKLLCES---------SQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
.++|.+..++.+.+.+.... -........+.|+|++|+|||++|+.+++.-.........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888888776554210 000123457899999999999999988763211111111123333210
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCC---------CccChhhHHhhhcCCCCCcEEEEe
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD---------DYSKWEPFNNCLMNGLRGSKILVT 314 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iiiT 314 (954)
.+.....+ .........+... +.-+|+||++..- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 01111101 1111222222222 3459999999532 233334555556555567788888
Q ss_pred cCchhHHhh------h-c-CcceEeCCCCCHHHHHHHHHHHHc
Q 036345 315 TRKKTVAQM------M-E-STDVFSIKELSKQECWSLFKRFAF 349 (954)
Q Consensus 315 tr~~~v~~~------~-~-~~~~~~l~~L~~~~~~~lf~~~~~ 349 (954)
|........ + . -...+++++++.++..+++.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 865432111 0 1 126889999999999999988764
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.04 E-value=9.2e-06 Score=79.39 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...++||+.+++.+.+.+... ..+.+.|+|++|+||||+|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999998642 2345689999999999999998773
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=5.1e-05 Score=82.10 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=105.0
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccc-eEEEEEeCCCCCHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFE-IRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i 250 (954)
..++|.+..++.+...+... ....+.++|+.|+||||+|+.+++.-. ...+. .+.-++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~------- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI------- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH-------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH-------
Confidence 45789888888888887643 222388999999999999999887311 11111 1122222221111
Q ss_pred HHHhhcCCCCcccHHHHHHHHHHHh------cCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh-HHhh
Q 036345 251 IEALEGSASNLGELQSLLQRIQTSI------AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT-VAQM 323 (954)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~~~ 323 (954)
+...+.+.... .+.+-++|+|++..-.....+.+...+......+++|++|.... +...
T Consensus 91 --------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 91 --------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp --------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred --------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 11111121111 23467899999965544555666666655455667777765432 2111
Q ss_pred -hcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHH
Q 036345 324 -MESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKT 380 (954)
Q Consensus 324 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 380 (954)
......+++.+++.++..+.+.+.+-...- .-. .+..+.|++.++|.+-.+..
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 122357899999999999988876632211 111 34567789999998875443
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.03 E-value=7.4e-05 Score=77.97 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=90.3
Q ss_pred CceeechhhhhHHHH-------HhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 172 SEVRGRDEEKNSLKS-------KLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
..++|.....+++.. .+.... ....+.+.|+|++|+|||++|+.+++. .. .. .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH----
Confidence 357777776666655 332211 235678999999999999999999883 22 12 122222211
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCC------CccC----hhhHHhhhcC---CCCCcEE
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD------DYSK----WEPFNNCLMN---GLRGSKI 311 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------~~~~----~~~l~~~l~~---~~~gs~i 311 (954)
+.+. ........+...+......+..+|+|||+..- .... ...+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 00000112222233333467889999998421 1111 1223232222 2233456
Q ss_pred EEecCchhHHhh---hcC-cceEeCCCCCH-HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC
Q 036345 312 LVTTRKKTVAQM---MES-TDVFSIKELSK-QECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG 373 (954)
Q Consensus 312 iiTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 373 (954)
|.||........ .+. ...+++++++. ++...++.+.. . -. .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 677776654332 122 45789999998 67777666532 1 11 3345668888877
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=2.6e-06 Score=92.35 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=32.3
Q ss_pred hcCCCceeEEEecCCCcccc--cc--ccccchhhhccCcCceeeccCcccccccccccCCCCccEEeccccC
Q 036345 582 FDQLTFLRTLKITGESAGVE--KS--IREIPKEIEKLKHLRFLKLSQVDLEELPETCCELVNLQTLDIEACG 649 (954)
Q Consensus 582 ~~~l~~Lr~L~L~~~~~~~~--~~--l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 649 (954)
...+++|+.|.+.+...... .. ...++..+..+++|+.|+|+++.-..+|. + .+++|++|+|..|.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC
Confidence 45667788887765421000 00 01233444555666666666553123333 2 25566666665554
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.00 E-value=0.00012 Score=78.48 Aligned_cols=189 Identities=15% Similarity=0.089 Sum_probs=104.8
Q ss_pred cCCceeechhhhhHHHHHhhccC------CCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCES------SQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
.-.+++|.+..++.|.+.+..+. .......+-+.++|++|+|||+||+.+++. .... .+.|+.+
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~----- 85 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS----- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH-----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH-----
Confidence 34679999999999988773110 000223457899999999999999999883 2222 2223321
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCcc-----------ChhhHHhhhc---CCCCC
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDYS-----------KWEPFNNCLM---NGLRG 308 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~-----------~~~~l~~~l~---~~~~g 308 (954)
.+ . .. .....+.....+.+ .-..++.+|+||++..-... ....+...+. ....+
T Consensus 86 -~l----~----~~--~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DL----V----SK--WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HH----H----TT--TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HH----h----hc--ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 1 11 01112222222322 23456789999999432110 0223333332 23345
Q ss_pred cEEEEecCchhHHh-hh--cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHHHHHh
Q 036345 309 SKILVTTRKKTVAQ-MM--ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG-LPLAAKTIGS 383 (954)
Q Consensus 309 s~iiiTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 383 (954)
..||.||....... .+ .-...+.+...+.++..+++..++........ ......|++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56666776543211 11 12356789999999999999987743222112 2334568888887 4545555543
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.97 E-value=4.8e-06 Score=77.57 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=68.6
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIE 252 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 252 (954)
+++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++.... .... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 578999999999888754332 1224789999999999999999874211 1112 23 655543221
Q ss_pred HhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCc
Q 036345 253 ALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRK 317 (954)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~ 317 (954)
.... ..+... ..-.|+||++..-.......+...+.......++|.||..
T Consensus 66 ---------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 2347899999766555556666666555555677777764
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.96 E-value=0.0002 Score=76.40 Aligned_cols=190 Identities=17% Similarity=0.114 Sum_probs=102.6
Q ss_pred cCCceeechhhhhHHHHHhhccC------CCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCES------SQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
.-.+++|.+..++.|.+.+..+- .+.....+.|.++|++|+|||+||+.+++... .. ..+.+..+.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH--
Confidence 34678999988888877663210 00012346788999999999999999998320 11 12333333211
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHH-HHhcCceeEEEecCCCCCCc------cC-h----hhHHhhhcC---CCCC
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQ-TSIAGKKFLLVLDDMWTDDY------SK-W----EPFNNCLMN---GLRG 308 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~~------~~-~----~~l~~~l~~---~~~g 308 (954)
....+ .. +.....+. ..-..++.+|+||++..-.. .. . ..+...+.. ...+
T Consensus 84 ------------~~~~g-~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 84 ------------SKWLG-ES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ------------CSSCC-SC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ------------hhhhh-HH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 11001 11 22222222 22346778999999953210 00 1 112222222 2344
Q ss_pred cEEEEecCchhH-Hhhh--cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHHHHHh
Q 036345 309 SKILVTTRKKTV-AQMM--ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGL-PLAAKTIGS 383 (954)
Q Consensus 309 s~iiiTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~~ 383 (954)
..||.||..... -..+ .-...+.+...+.++..+++..+......... ......|++.+.|. +-.+..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556656654321 1111 22357889999999999999887633221111 23456688999887 444665544
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.95 E-value=0.00014 Score=78.78 Aligned_cols=187 Identities=14% Similarity=0.057 Sum_probs=101.1
Q ss_pred CCceeechhhhhHHHHHhhcc----C--CCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCE----S--SQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.+++|.+..++.|.+.+..+ . .......+-|.|+|++|+|||+||+.+++. .... .+.+..+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~------ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH------
Confidence 457999999999998876321 0 000122345889999999999999999984 2222 2223222
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHH-HHHhcCceeEEEecCCCCCCcc-----------ChhhHHhhhcC---CCCCc
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRI-QTSIAGKKFLLVLDDMWTDDYS-----------KWEPFNNCLMN---GLRGS 309 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdvw~~~~~-----------~~~~l~~~l~~---~~~gs 309 (954)
.+. ....+ ..+.....+ ......++.+|+||++..-... ....+...+.. ...+.
T Consensus 119 ~l~--------~~~~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 DLV--------SKWMG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp HHH--------SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred HHh--------hhhcc--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 111 11111 111222222 2223467789999999532111 01223222221 23455
Q ss_pred EEEEecCchhH-Hhh-h-cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHHHHH
Q 036345 310 KILVTTRKKTV-AQM-M-ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG-LPLAAKTIG 382 (954)
Q Consensus 310 ~iiiTtr~~~v-~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~ 382 (954)
.||.||..... ... . .-...+.+...+.++..+++..+......... ......|++.+.| .+-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666654421 111 1 22357889999999999999887643221111 2334568888988 454555554
No 193
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.93 E-value=9.3e-05 Score=80.42 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=103.2
Q ss_pred CCceeechhhhhHHHHHhhccC---C---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCES---S---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.+++|.+..++.|.+.+..+- . ......+.|.|+|++|+|||+||+.+++. ... ..+.++++.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc--
Confidence 3568999999999988775310 0 00123457889999999999999999873 221 233444432111
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCCc-----------cChhhHHhhhcC----CCCC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDDY-----------SKWEPFNNCLMN----GLRG 308 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~----~~~g 308 (954)
.. ..........+.. ....++.+|+||++..-.. .....+...+.. ...+
T Consensus 156 ------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 ------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 0111122222222 2235678999999932100 112233333332 1234
Q ss_pred cEEEEecCchh-HHhhh-c-CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHHHHHh
Q 036345 309 SKILVTTRKKT-VAQMM-E-STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG-LPLAAKTIGS 383 (954)
Q Consensus 309 s~iiiTtr~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 383 (954)
..||.||.... +...+ . -...+.+...+.++..+++...+......-. .+....|++.+.| .+-.+..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45565665432 21111 1 1346789999999999999877643221111 3455668888888 5556665543
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=2.2e-06 Score=81.26 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=24.6
Q ss_pred cccceecccccccCcC--CCCCCCCCCCcceEEEecCcchhhh
Q 036345 890 PQLNSLKIENCSKLKS--LPDQLLRSTTLENLEIKKCPIVKES 930 (954)
Q Consensus 890 p~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~~ 930 (954)
++|++|+|++|++++. +. .+..+++|++|+|++|+.+++.
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCch
Confidence 4566777777765541 11 1234677888888888776653
No 195
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=4.4e-06 Score=81.52 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=84.1
Q ss_pred ccccccCcceEEEeecc-CCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccc--
Q 036345 552 VSIRYAKKLRSLFLVAN-GSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLE-- 628 (954)
Q Consensus 552 ~~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~-- 628 (954)
..+...+.|++|++++| .....-...+...+...+.|++|+|++|.+.. .....+...+...+.|++|+|++|.|.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~-~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-PVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-HHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh-HHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34566788999999887 41110011234456778899999999995432 123345666777789999999999887
Q ss_pred ---cccccccCCCCccEEec--cccCCCcc-----ccccccCCCCCCEEeccCcc
Q 036345 629 ---ELPETCCELVNLQTLDI--EACGSLKR-----LPQGIGKLVNLRHLMISHNV 673 (954)
Q Consensus 629 ---~lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 673 (954)
.+...+....+|++|+| ++|. +.. +...+...++|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 36777888889999999 7776 432 44556667889999998874
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.87 E-value=0.00033 Score=74.05 Aligned_cols=185 Identities=15% Similarity=0.117 Sum_probs=100.4
Q ss_pred CCceeechhhhhHHHHHhhccCC------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESS------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.+++|.+..++.+.+.+..+.. ......+.+.|+|++|+||||+|+.+++. ... ..+.+..+.-.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~--- 91 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLT--- 91 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTS---
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHh---
Confidence 35799999999999887743210 00112457899999999999999999873 221 22334433211
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHH-HHHHhcCceeEEEecCCCCCCcc-----------ChhhHHhhhcC---C--CC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQR-IQTSIAGKKFLLVLDDMWTDDYS-----------KWEPFNNCLMN---G--LR 307 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdvw~~~~~-----------~~~~l~~~l~~---~--~~ 307 (954)
... .......... +......++.+|+||++..-... ....+...+.. . +.
T Consensus 92 -----------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 92 -----------SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -----------SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -----------hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 110 0111222222 22233456789999999432110 01112222211 1 13
Q ss_pred CcEEEEecCchh-----HHhhhcCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHH
Q 036345 308 GSKILVTTRKKT-----VAQMMESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTI 381 (954)
Q Consensus 308 gs~iiiTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 381 (954)
+..||.||.... +... -...+.+...+.++...++...+......-. .+....+++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 456666776542 2221 2346788888888888888876533221111 2345668888998875 55444
Q ss_pred H
Q 036345 382 G 382 (954)
Q Consensus 382 ~ 382 (954)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.86 E-value=1.6e-05 Score=77.15 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=64.6
Q ss_pred hhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcC
Q 036345 178 DEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGS 257 (954)
Q Consensus 178 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 257 (954)
+..++.+.+++..-. ......+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.......
T Consensus 20 ~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCc
Confidence 344444544443222 1234689999999999999999998742211122 233443 444555554444332
Q ss_pred CCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChh--hHHhhhcCC-CCCcEEEEecCch
Q 036345 258 ASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWE--PFNNCLMNG-LRGSKILVTTRKK 318 (954)
Q Consensus 258 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iiiTtr~~ 318 (954)
... .... .+. +.-+|||||++....+.|. .+...+... ..|..+|+||...
T Consensus 90 ~~~-----~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 90 KDT-----KFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CCS-----HHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hHH-----HHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 1111 122 4568999999743333443 233333321 2567888888643
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=2.2e-05 Score=77.83 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=61.2
Q ss_pred hhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 036345 180 EKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS 259 (954)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 259 (954)
.++.+..++..... ......+.|+|++|+||||||+.+++. .......++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44455555543321 112267889999999999999999884 33333456666543 333333332211
Q ss_pred CcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhh--HHh-hhcCC-CCCcEEEEecCc
Q 036345 260 NLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEP--FNN-CLMNG-LRGSKILVTTRK 317 (954)
Q Consensus 260 ~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iiiTtr~ 317 (954)
.........+. . .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 --~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222222222 1 2399999997644444432 222 22221 235578888864
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=9e-05 Score=78.07 Aligned_cols=149 Identities=14% Similarity=0.010 Sum_probs=92.7
Q ss_pred echhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc-cccccceEEEEEeCC-CCCHHHHHHHHHHH
Q 036345 176 GRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND-VMNSFEIRMWVCVSD-PFDEFRVARAIIEA 253 (954)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~ 253 (954)
|-++.++.+...+... ......++|+.|+||||+|+.+.+... .........++..+. ...++. .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3445566677766532 256889999999999999999876310 111122234444332 222222 2233333
Q ss_pred hhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCch-hHHhhhcCcceEeC
Q 036345 254 LEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKK-TVAQMMESTDVFSI 332 (954)
Q Consensus 254 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~-~v~~~~~~~~~~~l 332 (954)
+.... ..+++-++|+|++..-.....+.+...+....+.+.+|++|.+. .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32111 12456789999997766667777888887766777887776543 343334444 8999
Q ss_pred CCCCHHHHHHHHHHHH
Q 036345 333 KELSKQECWSLFKRFA 348 (954)
Q Consensus 333 ~~L~~~~~~~lf~~~~ 348 (954)
+++++++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.76 E-value=0.00042 Score=73.26 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=100.3
Q ss_pred CCceeechhhhhHHHHHhhccCC-------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESS-------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
-.+++|.+..+++|.+.+..+-. -.-...+.+.|+|++|+|||+||+.+++. .... ++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----h
Confidence 35699999988888877653200 00123457899999999999999999983 2221 22222 2
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC--------------ccChhhHHhhhcC--CCC
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD--------------YSKWEPFNNCLMN--GLR 307 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~--------------~~~~~~l~~~l~~--~~~ 307 (954)
..+ .....+.. .. .....+.......+.+|+||++..-. ......+...+.. ...
T Consensus 83 ~~l----~~~~~g~~--~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PEL----LTMWFGES--EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHH----HHHHHTTC--TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHH----HhhhcCch--HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222 22222221 11 12223333334567899999994200 0012333333332 234
Q ss_pred CcEEEEecCchhHH-hh-hc---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHH
Q 036345 308 GSKILVTTRKKTVA-QM-ME---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLA 377 (954)
Q Consensus 308 gs~iiiTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 377 (954)
+..||.||...... .. .. -...+.+...+.++-.+++......... ....++. .+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCHH----HHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchHH----HHHHHcCCCCHH
Confidence 56777777655322 11 22 1357899999999999999876633221 1112233 366677777654
No 201
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.76 E-value=0.00049 Score=76.08 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=69.6
Q ss_pred cccccC-cceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhhccCcCceeeccCcccccc
Q 036345 553 SIRYAK-KLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKLKHLRFLKLSQVDLEEL 630 (954)
Q Consensus 553 ~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l 630 (954)
.|.++. .|+++.+... +..+-...|.+|..|+.+.+..+... .+..+++ .+.++..|+.+.+..+ ++.+
T Consensus 58 aF~~~~~~L~sI~iP~s-----vt~Ig~~AF~~C~~L~~i~~~~n~p~---~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-----VTEIGSNAFYNCTSLKRVTIQDNKPS---CVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp TTTTCCSCCCEEEECTT-----CCEECTTTTTTCTTCCEEEEGGGCCC---CCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred hccCCCCcCEEEEECCC-----eeEEhHHHhhCCccCceEeecCCCCC---eeeEechhhchhcccceeeccCCc-ccee
Confidence 455664 5888888654 23333556888999999988765211 3555543 4677788888777654 4444
Q ss_pred c-ccccCCCCccEEeccccCCCccccc-cccCCCCCCEEeccCc
Q 036345 631 P-ETCCELVNLQTLDIEACGSLKRLPQ-GIGKLVNLRHLMISHN 672 (954)
Q Consensus 631 p-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~ 672 (954)
+ ..+..+.+|+.+.+... +..++. .+..+.+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 4 34677788888888643 344443 3566778888877643
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.75 E-value=0.00042 Score=77.50 Aligned_cols=190 Identities=15% Similarity=0.100 Sum_probs=100.4
Q ss_pred cCCceeechhhhhHHHHHhhcc----CC--CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCE----SS--QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
.-.+++|.+..++.|.+.+..+ .- ......+.|.|+|++|+|||+||+.+++. . ....++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH--
Confidence 3467999999999888876321 00 00123467889999999999999999983 2 111233333221
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc-------cChhhH----HhhhcC---CCCCc
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY-------SKWEPF----NNCLMN---GLRGS 309 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-------~~~~~l----~~~l~~---~~~gs 309 (954)
+ .....+. .......+. ...-..++.+|+||++..-.. .....+ ...+.. ...+.
T Consensus 204 --l----~~~~~g~--~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 --L----VSKWLGE--SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred --H----Hhhhcch--HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 1 1111111 111222222 222235678999999953210 111122 222211 13456
Q ss_pred EEEEecCchhHHh-h-hc-CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHHHHH
Q 036345 310 KILVTTRKKTVAQ-M-ME-STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGL-PLAAKTIG 382 (954)
Q Consensus 310 ~iiiTtr~~~v~~-~-~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 382 (954)
.||.||....... . .. -...+.+...+.++...+|..++........ ......|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6776776543211 1 11 2347788888899999999887633221111 23345688889884 44555544
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.72 E-value=9.2e-05 Score=90.40 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=81.5
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc---cccc--cceEEEEEeCCCCCHHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND---VMNS--FEIRMWVCVSDPFDEFR 245 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~--f~~~~wv~~s~~~~~~~ 245 (954)
-..++||+.+++++...|.... ...+.++|++|+||||+|+.+++... +... -..+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred CcccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---
Confidence 3568999999999999986532 23468999999999999999887310 0001 11233443322100
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHHHh-c-CceeEEEecCCCCCC--------ccChhhHHhhhcCCCCCcEEEEec
Q 036345 246 VARAIIEALEGSASNLGELQSLLQRIQTSI-A-GKKFLLVLDDMWTDD--------YSKWEPFNNCLMNGLRGSKILVTT 315 (954)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iiiTt 315 (954)
+. ....+.......+.+.+ . +++.+|++|++..-. .+....+...+.. .+..+|.+|
T Consensus 240 ----------g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at 306 (854)
T 1qvr_A 240 ----------GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEE
T ss_pred ----------cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEec
Confidence 00 00112222222222222 2 467899999995422 1111223333433 234466555
Q ss_pred CchhHHh-----hh-cCcceEeCCCCCHHHHHHHHHHH
Q 036345 316 RKKTVAQ-----MM-ESTDVFSIKELSKQECWSLFKRF 347 (954)
Q Consensus 316 r~~~v~~-----~~-~~~~~~~l~~L~~~~~~~lf~~~ 347 (954)
....... .+ .....+.+++++.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 5443211 11 12346899999999999999753
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.71 E-value=0.00056 Score=75.31 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=99.3
Q ss_pred cCCceeechhhhhHHHHHhhccCC------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESS------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
.-.+++|.+..++.|.+.+..... ......+.|.|+|++|+|||+||+.+++. ... ..+.++++.-..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTS- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhc-
Confidence 346799999999999887732110 00112357899999999999999999873 221 223333332111
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC-----------ccChhhHHhhhcC----CCCC
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD-----------YSKWEPFNNCLMN----GLRG 308 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l~~----~~~g 308 (954)
.. . + .....+...+...-.....+|+||++..-. ......+...+.. ....
T Consensus 187 -~~--------~----g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 -KY--------V----G-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -cc--------c----c-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 00 0 0 011111222222223456799999994210 0001122222211 1233
Q ss_pred cEEEEecCchh-HHhh-hcC-cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH-HHHHHH
Q 036345 309 SKILVTTRKKT-VAQM-MES-TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL-AAKTIG 382 (954)
Q Consensus 309 s~iiiTtr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 382 (954)
..||.||.... +... ... ...+.+...+.++..+++...+......-. .+....|++.+.|..- ++..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 45555665432 2111 112 246889999999999999887643222111 3345678888888554 555443
No 205
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=2.7e-05 Score=73.74 Aligned_cols=87 Identities=9% Similarity=0.141 Sum_probs=51.8
Q ss_pred cCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccchhhhcc----CcCceeeccCcc-cc--c
Q 036345 557 AKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKL----KHLRFLKLSQVD-LE--E 629 (954)
Q Consensus 557 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L----~~L~~L~L~~~~-i~--~ 629 (954)
--+|+.|+++++. ++..--..+.++++|+.|+|++|...++..+.. |+.+ ++|++|+|++|. |+ .
T Consensus 60 ~~~L~~LDLs~~~----Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 60 KYKIQAIDATDSC----IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCCEEEEEEESCC----CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CceEeEEeCcCCC----ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHH
Confidence 3467788888775 332222335678888888888885443333332 3332 367777777764 55 2
Q ss_pred ccccccCCCCccEEeccccCCCc
Q 036345 630 LPETCCELVNLQTLDIEACGSLK 652 (954)
Q Consensus 630 lp~~i~~L~~L~~L~L~~~~~l~ 652 (954)
+ ..+..+++|++|++++|..++
T Consensus 132 l-~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 I-IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp H-HHGGGCTTCCEEEEESCTTCC
T ss_pred H-HHHhcCCCCCEEECCCCCCCC
Confidence 2 234566777777777776554
No 206
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.68 E-value=2.3e-05 Score=72.66 Aligned_cols=110 Identities=9% Similarity=0.084 Sum_probs=63.0
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIE 252 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 252 (954)
.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... -++.+....-....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHh------
Confidence 578999888888887754322 112377999999999999999988421 22322221100100
Q ss_pred HhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC-CCCcEEEEecCc
Q 036345 253 ALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG-LRGSKILVTTRK 317 (954)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iiiTtr~ 317 (954)
...+.+. .+.-.++||++..-.......+...+... ..+.++|.||..
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 22347899999765555455565555443 345678887754
No 207
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.68 E-value=0.00015 Score=77.32 Aligned_cols=138 Identities=15% Similarity=0.237 Sum_probs=73.7
Q ss_pred CceeechhhhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+...+..... ........+.++|++|+||||+|+.+++. ....-...+.+.++.-.... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHH
Confidence 3578998888888877765311 11223468999999999999999999873 21111224455554322211 111
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEecC
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVTTR 316 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr 316 (954)
.+.+.......... ...+...+ ....-+++||++..-.......+...+..+. .++.+|.||.
T Consensus 94 ----~l~g~~~~~~~~~~-~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 94 ----RLIGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp ----HHHCCCTTSTTTTT-CCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred ----HhcCCCCccccccc-cchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 11111111000000 01122222 2344699999996655555566665554321 2444777776
Q ss_pred c
Q 036345 317 K 317 (954)
Q Consensus 317 ~ 317 (954)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 208
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.68 E-value=0.0011 Score=71.18 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=94.7
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
..++|.+..++.+...+...... ......+.++|++|+||||||+.+++. ....|. ..-+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~----~~sg~~~~--------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH----VTSGPVLV--------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE----EEETTTCC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE----EEechHhc---------
Confidence 46788887777776666432100 123357899999999999999999883 222111 11111110
Q ss_pred HHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC------------------CCcEEE-
Q 036345 252 EALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL------------------RGSKIL- 312 (954)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii- 312 (954)
....+.. +...+ .++-++++|++..-.....+.+...+.... +...++
T Consensus 89 -----------~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 89 -----------KQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -----------SHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -----------CHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 0011111 11112 234577788885433223333332222211 011222
Q ss_pred EecCchhHHhhhcC--cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHH
Q 036345 313 VTTRKKTVAQMMES--TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIG 382 (954)
Q Consensus 313 iTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 382 (954)
.|++...+...+.. .-.+.+++.+.++-.+++.+.+..... . .-.+.+..|++.++|.|-.+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~---~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-E---IEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-C---BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHhcCCChHHHHHHH
Confidence 34444332222111 235889999999999999887632211 1 114567889999999997654443
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.67 E-value=9.9e-05 Score=83.27 Aligned_cols=145 Identities=15% Similarity=0.165 Sum_probs=79.0
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccccccc------c-eEEEEEeCCCCCHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF------E-IRMWVCVSDPFDEF 244 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------~-~~~wv~~s~~~~~~ 244 (954)
..++||+.+++++...+.... ..-+.|+|++|+|||++|+.++.. +...+ . ..+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 469999999999999987532 224579999999999999998773 21111 1 12222222
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhh-
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM- 323 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~- 323 (954)
....+. ..... ...+...-..++.+|++|. ..+....+...+.. ...++|.+|........
T Consensus 246 -------~~~~g~--~e~~~---~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDRL---KKVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHHH---HHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 000010 00111 2222233345678999991 11222333333322 23566666655432111
Q ss_pred ------hcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 324 ------MESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 324 ------~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
......+.+++.+.++..+++....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1223479999999999999998754
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=3.3e-05 Score=79.10 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=32.3
Q ss_pred cCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccccccccccCCC--CccEEeccccC
Q 036345 583 DQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLEELPETCCELV--NLQTLDIEACG 649 (954)
Q Consensus 583 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~ 649 (954)
.+++.|+.|+|++|.+. .+..+|..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~---~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY---RLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCC---CCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCC---CCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 34556666666666322 2223334455566666666666665544 2233333 55666665555
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.61 E-value=0.00053 Score=77.19 Aligned_cols=185 Identities=10% Similarity=0.059 Sum_probs=101.5
Q ss_pred CceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
.+++|.+..+++|.+++...... .....+-|.|+|++|+|||++|+.+++. .... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 46899999999998877543000 0012345889999999999999999873 2222 2333321
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc-----------cChhhHHhhhcC--CCCCcEE
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY-----------SKWEPFNNCLMN--GLRGSKI 311 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~--~~~gs~i 311 (954)
. +. .... ..........+.....+++.+|+||++..-.. .....+...+.. ...+.+|
T Consensus 273 ~----l~----~~~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 E----IM----SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp H----HH----TSCT-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred H----hh----hhhc-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1 11 1111 11112233334444456778999999821100 111224333332 2334566
Q ss_pred EEecCchhH-Hhhh----cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCC-hHHHHHH
Q 036345 312 LVTTRKKTV-AQMM----ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGL-PLAAKTI 381 (954)
Q Consensus 312 iiTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 381 (954)
|.||..... ...+ .-...+.+...+.++..+++..++..... .....+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 667765432 2111 12346899999999999999887632221 122233 3467777774 4444444
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.57 E-value=0.00014 Score=75.53 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=79.8
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
..++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+.+++... ..-...+.++++.- .. ..+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~-~~-~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL-NE-NLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS-CH-HHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC-Ch-hHHHH--
Confidence 4589999998888877654332 123578999999999999999987421 11112344555542 22 22211
Q ss_pred HHhhcCCCCc-ccH-HHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC-----------CCCcEEEEecCch
Q 036345 252 EALEGSASNL-GEL-QSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG-----------LRGSKILVTTRKK 318 (954)
Q Consensus 252 ~~l~~~~~~~-~~~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~~ 318 (954)
.+.+..... ... ......+. ....-+|+||++..-.......+...+..+ ..+.+||.||...
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp -HHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred -HhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 222211100 000 00000111 123458999999665544444555544422 1346788887653
Q ss_pred --hH----------HhhhcCcceEeCCCCCH--HHHHHHHH
Q 036345 319 --TV----------AQMMESTDVFSIKELSK--QECWSLFK 345 (954)
Q Consensus 319 --~v----------~~~~~~~~~~~l~~L~~--~~~~~lf~ 345 (954)
.. ...+. ...+.+.+|.+ ++...++.
T Consensus 152 ~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~ 191 (265)
T 2bjv_A 152 LPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAE 191 (265)
T ss_dssp HHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHH
Confidence 11 11111 13578888876 55554443
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.55 E-value=5.3e-05 Score=70.55 Aligned_cols=86 Identities=14% Similarity=0.030 Sum_probs=49.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
..++|+|+.|+|||||++.++...... . ..++++....-... . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 478999999999999999998742211 1 12556654432211 0 12345
Q ss_pred eEEEecCCCCCCccChhhHHhhhcC-CCCC-cEEEEecCc
Q 036345 280 FLLVLDDMWTDDYSKWEPFNNCLMN-GLRG-SKILVTTRK 317 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~l~~~l~~-~~~g-s~iiiTtr~ 317 (954)
-++||||+.......-+.+...+.. ...| ++||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 6889999955332222334343322 1123 358888874
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0019 Score=69.53 Aligned_cols=181 Identities=13% Similarity=0.091 Sum_probs=99.9
Q ss_pred cCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
.-.++.|-++.+++|.+.+.-+-.. .-...+-|.++|++|.|||.||+++++. .... .+.|..+.-
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l-- 218 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAEL-- 218 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGG--
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHh--
Confidence 3457899998888887765432000 0223456889999999999999999983 3222 233443321
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCC--------ccC------hhhHHhhhcC--C
Q 036345 243 EFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDD--------YSK------WEPFNNCLMN--G 305 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~--------~~~------~~~l~~~l~~--~ 305 (954)
.... ..+.+.....+.. .-...+++|+||++..-. ... ...+...+.. .
T Consensus 219 ------------~sk~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 219 ------------VQKY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ------------SCSS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ------------hccc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 1111 1111222222222 234678999999995311 000 1112222222 2
Q ss_pred CCCcEEEEecCchhHHh-h-h---cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 036345 306 LRGSKILVTTRKKTVAQ-M-M---ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL 376 (954)
Q Consensus 306 ~~gs~iiiTtr~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 376 (954)
..+..||.||...+... . . .-...++++.-+.++..++|+.+.-... ....-++. .|++.+.|.--
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvdl~----~lA~~t~G~SG 355 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGINLR----KVAEKMNGCSG 355 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCCHH----HHHHHCCSCCH
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHCCCCCH
Confidence 34556677776544321 1 1 2256899999999999999987653322 12222343 47788887543
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.51 E-value=2.1e-05 Score=80.58 Aligned_cols=81 Identities=26% Similarity=0.264 Sum_probs=62.7
Q ss_pred hccCcCceeeccCcccccc---cccccCCCCccEEeccccCCCccccccccCCC--CCCEEeccCccccccCCC------
Q 036345 612 EKLKHLRFLKLSQVDLEEL---PETCCELVNLQTLDIEACGSLKRLPQGIGKLV--NLRHLMISHNVYLDYMPK------ 680 (954)
Q Consensus 612 ~~L~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------ 680 (954)
.++++|+.|+|++|.|..+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5789999999999998865 4667899999999999988 6665 3455555 999999999987655552
Q ss_pred -CCCCCCCCCccCce
Q 036345 681 -GIERLTCLRTLREL 694 (954)
Q Consensus 681 -~i~~L~~L~~L~~~ 694 (954)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 24566777777543
No 216
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.47 E-value=0.00039 Score=78.24 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=59.5
Q ss_pred eEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEec----------C----chhHH-hhhcCcceEeCCCCCHHHHHHHH
Q 036345 280 FLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTT----------R----KKTVA-QMMESTDVFSIKELSKQECWSLF 344 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTt----------r----~~~v~-~~~~~~~~~~l~~L~~~~~~~lf 344 (954)
-++++|++..-+.+.++.+...+...... .+|+.| . ...+. ........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999776666777777776654444 344343 2 11111 11122346799999999999999
Q ss_pred HHHHcCCCCCCCchhHHHHHHHHHHhc-CCChHHHHHH
Q 036345 345 KRFAFFGRHPSECEQLEEIGRKIVSRC-KGLPLAAKTI 381 (954)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPlai~~~ 381 (954)
.+.+-.....- -.+....|++.+ +|.|..+..+
T Consensus 376 ~~~~~~~~~~~----~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGINI----SEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCCB----CHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCCC----CHHHHHHHHHHccCCCHHHHHHH
Confidence 87653211111 134556788888 7888765444
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0011 Score=72.42 Aligned_cols=181 Identities=15% Similarity=0.178 Sum_probs=93.5
Q ss_pred ccCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF 241 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 241 (954)
+.-.++.|-+..+++|.+.+..+-.. .-...+-|.++|++|+|||+||+++++. .... .+.|..+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhh
Confidence 34467899999888887765431100 0234566889999999999999999983 3222 2334433211
Q ss_pred CHHHHHHHHHHHhhcCCCCcccHHHHHHH-HHHHhcCceeEEEecCCCC---------CCcc-C----hhhHHhhhc--C
Q 036345 242 DEFRVARAIIEALEGSASNLGELQSLLQR-IQTSIAGKKFLLVLDDMWT---------DDYS-K----WEPFNNCLM--N 304 (954)
Q Consensus 242 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdvw~---------~~~~-~----~~~l~~~l~--~ 304 (954)
... .......... +...-...++++++|++.. .... . ...+...+. .
T Consensus 244 --------------~~~--~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 244 --------------HKY--LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp --------------CSS--CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred --------------ccc--cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 111 1111222222 2223346689999999831 0000 0 112222222 2
Q ss_pred CCCCcEEEEecCchhHHh-h-hc--C-cceEeCCCCCH-HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 305 GLRGSKILVTTRKKTVAQ-M-ME--S-TDVFSIKELSK-QECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 305 ~~~gs~iiiTtr~~~v~~-~-~~--~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
...+..||.||....... . .. . ...+++..++. ++-..+|..+.-.-. ....-++. .+++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~dl~----~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEADLD----SLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCCHH----HHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccCHH----HHHHHCCCCC
Confidence 234556777776543211 1 12 1 34677876655 445556665543221 11122333 4777777753
No 218
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.45 E-value=3e-05 Score=75.52 Aligned_cols=115 Identities=11% Similarity=0.098 Sum_probs=85.1
Q ss_pred CCceEEEEEEec-cccC-----CcccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCcccccccccc
Q 036345 534 KEKLYHLMLMIN-LFST-----FPVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREI 607 (954)
Q Consensus 534 ~~~lr~L~l~~~-~~~~-----~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l 607 (954)
...+++|+++.+ .+.. +...+...++|++|++++|.....-...+...+...+.|++|+|++|.+.. .....+
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~-~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG-SGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH-HHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH-HHHHHH
Confidence 567888999988 7653 344566789999999999872111111234456677899999999995542 233446
Q ss_pred chhhhccCcCceeec--cCcccc-----cccccccCCCCccEEeccccC
Q 036345 608 PKEIEKLKHLRFLKL--SQVDLE-----ELPETCCELVNLQTLDIEACG 649 (954)
Q Consensus 608 p~~i~~L~~L~~L~L--~~~~i~-----~lp~~i~~L~~L~~L~L~~~~ 649 (954)
...+...+.|++|+| ++|.|. .+...+...++|++|+|++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 777888899999999 889887 366777788999999999987
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.42 E-value=0.00018 Score=76.06 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=83.4
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCc-ccccccceEEEEEeCCCCCHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDN-DVMNSFEIRMWVCVSDPFDEFRVARAI 250 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i 250 (954)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.. +... ..+.++++.- ...++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---~~v~v~~~~~--~~~l~~~- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSDR---PLVTLNCAAL--NESLLES- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSS---CCCEEECSSC--CHHHHHH-
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccCC---CeEEEeCCCC--ChHHHHH-
Confidence 4588999999998888765432 12347799999999999999998731 1111 2234444432 2222222
Q ss_pred HHHhhcCCCCccc-H-HHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC-----------CCCcEEEEecCc
Q 036345 251 IEALEGSASNLGE-L-QSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG-----------LRGSKILVTTRK 317 (954)
Q Consensus 251 ~~~l~~~~~~~~~-~-~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~ 317 (954)
.+.+...+.-. . ......+... ..-.|+||++..-.......+...+... ....+||.||..
T Consensus 72 --~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 72 --ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp --HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred --HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 22222111000 0 0000111111 1246899999765544445555555432 134678887765
Q ss_pred hh---HHh---------hhcCcceEeCCCCC--HHHHHHHHHH
Q 036345 318 KT---VAQ---------MMESTDVFSIKELS--KQECWSLFKR 346 (954)
Q Consensus 318 ~~---v~~---------~~~~~~~~~l~~L~--~~~~~~lf~~ 346 (954)
.- +.. .+. ...+.+++|. .++...++.+
T Consensus 147 ~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 147 DLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp CHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred cHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 31 111 111 2357788888 4555555543
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.002 Score=70.69 Aligned_cols=180 Identities=13% Similarity=0.138 Sum_probs=99.6
Q ss_pred cCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
.-.++.|-++.+++|.+.+.-+-.. .-..++-|.++|++|.|||+||+++++. .... .+.|..+.-.
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~- 252 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIV- 252 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTC-
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhc-
Confidence 3456889998888887665432100 0224567889999999999999999984 3222 2334433211
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCCCC------ccC--------hhhHHhhhcC--C
Q 036345 243 EFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWTDD------YSK--------WEPFNNCLMN--G 305 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~------~~~--------~~~l~~~l~~--~ 305 (954)
... ..........+.. .-...+++|++|++..-- ... ...+...+.. .
T Consensus 253 -------------sk~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 253 -------------DKY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp -------------CSS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred -------------ccc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 111 1111222222222 334678999999995310 000 1122222322 2
Q ss_pred CCCcEEEEecCchhHHhh--hcC---cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 306 LRGSKILVTTRKKTVAQM--MES---TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 306 ~~gs~iiiTtr~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
..+..||.||........ +.. ...++++.-+.++..++|..+.-.-.. ...-++ ..+++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 345677888866543221 121 457888888888888888876643221 112233 34777887754
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=0.0014 Score=67.48 Aligned_cols=187 Identities=12% Similarity=0.056 Sum_probs=94.4
Q ss_pred cCCceeechhhhhHHHHHhh---ccCCC---CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 170 NVSEVRGRDEEKNSLKSKLL---CESSQ---QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
.-.+++|.+..++++.+.+. .+..- .....+-+.|+|++|+||||||+.+++. .... .+.+..+.-.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH-
Confidence 34578999877777655432 21100 0012234889999999999999999873 2222 23333222100
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc--------------cChhhHHhhhcC--CCC
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY--------------SKWEPFNNCLMN--GLR 307 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~ 307 (954)
.... .........+.........++++|++..-.. .....+...+.. ...
T Consensus 84 -------------~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------------MFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------SCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------Hhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 0001 1112223333333345567999999832100 011122222221 234
Q ss_pred CcEEEEecCchh-HHhhh-c---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCC-ChHHHHHH
Q 036345 308 GSKILVTTRKKT-VAQMM-E---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKG-LPLAAKTI 381 (954)
Q Consensus 308 gs~iiiTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~ 381 (954)
+..||.||.... +...+ . -...+.+...+.++-.+++..+.-... ...... ...++..+.| .+--+..+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 556777776543 21111 1 134778888888888888877653211 111111 2346777777 66544433
No 222
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.40 E-value=0.0017 Score=71.70 Aligned_cols=318 Identities=11% Similarity=0.098 Sum_probs=152.5
Q ss_pred eEEEEEEeccccCC-cccccccCcceEEEeeccCCccccCCCchhhhcCCCceeEEEecCCCccccccccccch-hhhcc
Q 036345 537 LYHLMLMINLFSTF-PVSIRYAKKLRSLFLVANGSFKVLSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPK-EIEKL 614 (954)
Q Consensus 537 lr~L~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L 614 (954)
++.+.+..+ ++.+ ...|.+|.+|+.+.+..+.. ..+..+-...|.++..|+.+.+..+ +..++. .+.++
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p-~~l~~Ig~~aF~~c~~L~~i~~~~~-------~~~I~~~aF~~c 136 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKP-SCVKKIGRQAFMFCSELTDIPILDS-------VTEIDSEAFHHC 136 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCC-CCCCEECTTTTTTCTTCCBCGGGTT-------CSEECTTTTTTC
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCC-CeeeEechhhchhcccceeeccCCc-------cceehhhhhhhh
Confidence 555665433 2222 35678999999999976520 1122223456788888887776543 455543 47788
Q ss_pred CcCceeeccCccccccc-ccccCCCCccEEeccccCCCccccccccCCCCCCEEeccCccccccCCCCCCCCCCCCccCc
Q 036345 615 KHLRFLKLSQVDLEELP-ETCCELVNLQTLDIEACGSLKRLPQGIGKLVNLRHLMISHNVYLDYMPKGIERLTCLRTLRE 693 (954)
Q Consensus 615 ~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 693 (954)
.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+...-....+|..+.+..+.. ..-...+..+.++.....
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITS 212 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEE
T ss_pred cccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCccc-ccccchhhhccccceecc
Confidence 99999998754 34443 34677889999988753 555554433456788887764421 111122333333333211
Q ss_pred eEecCCccCcccccccccCCceeEEcCCCCCCCccccccccCccCCCCceEEEEecCCcccccchhhhhhHHHHhhcCCC
Q 036345 694 LVVSRKGCNLGGLRHLNHLRGSFRIRGLGNVTHVDEAKNSELDKKKNLVCLELWFDREEEEATDENEAAKHEATSEALRP 773 (954)
Q Consensus 694 ~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (954)
...... .+...-.-....+..... .......+..+.+... .. . .-...+..
T Consensus 213 ~~~~~~--~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ip~~-v~-~-----------i~~~aF~~ 263 (394)
T 4gt6_A 213 DSESYP--AIDNVLYEKSANGDYALI--------------RYPSQREDPAFKIPNG-VA-R-----------IETHAFDS 263 (394)
T ss_dssp CCSSSC--BSSSCEEEECTTSCEEEE--------------ECCTTCCCSEEECCTT-EE-E-----------ECTTTTTT
T ss_pred cccccc--cccceeeccccccccccc--------------ccccccccceEEcCCc-ce-E-----------cccceeee
Confidence 000000 000000000000000000 0001111122211100 00 0 00112445
Q ss_pred CCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCC--CCCCCCCCceEeecCCCCceEeCcccccCCCCCCC
Q 036345 774 NPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMP--PLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGT 851 (954)
Q Consensus 774 ~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 851 (954)
+.+|+.+.+......- -...+.++++|+.+.+... ...++ .+..+.+|+.+.|.+ .++.++...+.
T Consensus 264 c~~L~~i~lp~~~~~I-~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~------- 331 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSI-GTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDAFA------- 331 (394)
T ss_dssp CSSCCEEECCTTCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-------
T ss_pred cccccEEeccccccee-cCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhHhh-------
Confidence 5666666554321110 1223446677777777543 12222 367778888888864 35666654432
Q ss_pred CcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcceEEEecC
Q 036345 852 SATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPDQLLRSTTLENLEIKKC 924 (954)
Q Consensus 852 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 924 (954)
++.+|+.+.|.. +++.+.. ..+..+.+|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 332 --------~C~~L~~i~ip~--sv~~I~~---~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 332 --------GCEQLERIAIPS--SVTKIPE---SAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp --------TCTTCCEEEECT--TCCBCCG---GGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred --------CCCCCCEEEECc--ccCEEhH---hHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 567777777742 2333322 234567788888877653211 23445667777776543
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.39 E-value=0.00092 Score=71.09 Aligned_cols=153 Identities=11% Similarity=0.092 Sum_probs=83.1
Q ss_pred CceeechhhhhHHHHHhhcc--CCC------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC-
Q 036345 172 SEVRGRDEEKNSLKSKLLCE--SSQ------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD- 242 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~- 242 (954)
..++|.+..++.+...+... ... .......+.++|++|+|||++|+.+++. ... ..+.+.++.-.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 46899999999988777541 000 0012346789999999999999999873 221 233444433211
Q ss_pred ------HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccC------------hhhHHhhhcC
Q 036345 243 ------EFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSK------------WEPFNNCLMN 304 (954)
Q Consensus 243 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~------------~~~l~~~l~~ 304 (954)
....+..+.... .+ .+.. .+.+.+|+||++..-.... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~----~~---------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSA----GG---------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTT----TT---------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHh----hH---------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 011111111110 00 0111 1235799999996533332 3444444433
Q ss_pred C----------CCCcEEEEecC----ch-----hHHhhhcCcceEeCCCCCHHHHHHHHHH
Q 036345 305 G----------LRGSKILVTTR----KK-----TVAQMMESTDVFSIKELSKQECWSLFKR 346 (954)
Q Consensus 305 ~----------~~gs~iiiTtr----~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 346 (954)
. ..+..+|.|+. .. .+...+ ...+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12455666642 21 122212 24699999999999998874
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.38 E-value=0.00065 Score=82.07 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=86.7
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcc---cc-cccceEEEE-EeCCCCCHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDND---VM-NSFEIRMWV-CVSDPFDEFRV 246 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~-~~f~~~~wv-~~s~~~~~~~~ 246 (954)
..++||+.+++++.+.|.... ..-+.|+|++|+||||+|+.+++.-. +. ......+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 568999999999999987432 23568999999999999998876310 00 112233322 11110
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCCc-----cChhhHHhhhcC--CCCCcEEEEecCch
Q 036345 247 ARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDDY-----SKWEPFNNCLMN--GLRGSKILVTTRKK 318 (954)
Q Consensus 247 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~-----~~~~~l~~~l~~--~~~gs~iiiTtr~~ 318 (954)
+.+. ......+.....+.+.+ ..++.+|++||+..-.. ..-......+.. ...+..+|.+|...
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 0011 11122333333333333 34578999999954210 001111122211 12345677776655
Q ss_pred hHHhhh-------cCcceEeCCCCCHHHHHHHHHHHH
Q 036345 319 TVAQMM-------ESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 319 ~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
...... .....+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432211 112368999999999999887643
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00021 Score=86.17 Aligned_cols=156 Identities=16% Similarity=0.252 Sum_probs=89.2
Q ss_pred CceeechhhhhHHHHHhhccCCC---CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQ---QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+++. ....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 46899999998888877644321 1223457999999999999999999873 2111223445554431110
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCC-----------CCCcEEEEecCc
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNG-----------LRGSKILVTTRK 317 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~ 317 (954)
... ....+...++ +...-+|+||++..........+...+..+ ....+||+||..
T Consensus 564 ---------~~~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HST--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CCC--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------ccc--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 0011111111 123448999999766655556666655432 135688888873
Q ss_pred h-----h----HHhhh-----cC-cceEeCCCCCHHHHHHHHHHHH
Q 036345 318 K-----T----VAQMM-----ES-TDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 318 ~-----~----v~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
. . +...+ .. ...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 11111 11 2588899999998888877644
No 226
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.0044 Score=67.67 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=97.0
Q ss_pred CceeechhhhhHHHHHhhccCC-------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS-------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
.++.|-++.+++|.+.+.-+-. -.-...+-|.++|++|.|||+||+++++. .... .+.|..+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~----- 278 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSE----- 278 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGG-----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHH-----
Confidence 4688999888888775432100 00234567889999999999999999983 3222 23344332
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHH-HHhcCceeEEEecCCCCCC------ccC--------hhhHHhhhcC--CCC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQ-TSIAGKKFLLVLDDMWTDD------YSK--------WEPFNNCLMN--GLR 307 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdvw~~~------~~~--------~~~l~~~l~~--~~~ 307 (954)
+.... ....+.....+. ..-...+++|++|++...- ... ...+...+.. ...
T Consensus 279 ---------L~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 279 ---------LVQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ---------GCCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ---------hhccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11111 111122222222 2334678999999984311 000 0112222222 234
Q ss_pred CcEEEEecCchhHHh-h-hc---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 308 GSKILVTTRKKTVAQ-M-ME---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 308 gs~iiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
+..||.||....... . .. -...+++..-+.++..++|+.+.-.-.. ...-++ ..|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCCC
Confidence 455666775543221 1 11 2568899988999999999876633211 112233 34778888754
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.26 E-value=0.00048 Score=83.08 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=79.8
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCc---ccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDN---DVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
.+++||+.+++++...|.... ..-+.++|++|+|||++|+.+++.- .+.......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 469999999999999987532 2236899999999999999887631 0000001111111111
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHhh-----
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM----- 323 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~----- 323 (954)
.....+. ... .+...+......++.+|++|.. .+....+...+. ....++|.||........
T Consensus 245 --g~~~~G~--~e~---~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRGE--FED---RLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CT---THHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccch--HHH---HHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 0000000 011 1222233333467889999921 122222333332 234566666655442111
Q ss_pred --hcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 324 --MESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 324 --~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
......+.++..+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1123579999999999999998654
No 228
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.19 E-value=0.0095 Score=65.24 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=31.8
Q ss_pred CCCCCCCEEEEeeecCCCCC-CcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcc
Q 036345 772 RPNPNIEVLKIFQYKGKTVF-PSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDE 841 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 841 (954)
..+.+|+.+.+..+ ... + ...+..+.+|+.+.+...-..-.-..+..+++|+.+.+.++. ++.++..
T Consensus 237 ~~~~~L~~i~lp~~-v~~-I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~ 304 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTS-IGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPR 304 (379)
T ss_dssp TTCSSCCEEEECTT-CCE-ECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTT-CCEECTT
T ss_pred cCCccceEEEcCCC-ccE-eCccccceeehhccccccccceeccccccccccccccccccccc-cceehhh
Confidence 34555666655432 111 2 223335566666666543111111235566666666665443 5555543
No 229
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.001 Score=72.90 Aligned_cols=180 Identities=15% Similarity=0.117 Sum_probs=97.2
Q ss_pred cCCceeechhhhhHHHHHhhccCC-------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESS-------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
.-.++.|-++.+++|.+.+..+-. -.-...+-|.++|++|.|||.||+++++. .... .+.+..+.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~--- 250 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQ--- 250 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGG---
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhh---
Confidence 345789999998888776432110 00234567889999999999999999983 2222 23344332
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcCceeEEEecCCCC------C-Ccc---Ch----hhHHhhhcC--C
Q 036345 243 EFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAGKKFLLVLDDMWT------D-DYS---KW----EPFNNCLMN--G 305 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~------~-~~~---~~----~~l~~~l~~--~ 305 (954)
+.... ....+.....+.. .-...+++|++|++.. . ... .. ..+...+.. .
T Consensus 251 -----------l~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 251 -----------LVQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -----------GCSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -----------hhhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 11111 1111222223322 2234679999999831 0 000 01 112222222 2
Q ss_pred CCCcEEEEecCchhHHh-hh-c---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 306 LRGSKILVTTRKKTVAQ-MM-E---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 306 ~~gs~iiiTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
..+..||.||....... .+ . -...++++.-+.++..++|..+.-.-.. ...-++ ..|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCCC
Confidence 34456666776654322 11 1 1457889888888888888766532211 111233 34777887753
No 230
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.18 E-value=0.0048 Score=68.75 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=96.8
Q ss_pred CCceeechhhhhHHHHHhhccCCC------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.+++|.+..++++.+.+..-... .....+-|.|+|++|+|||+||+.+++. .... .+.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH-
Confidence 457899988777776654321100 0011234789999999999999999883 2222 233443321110
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc--------------cChhhHHhhhcC--CCCC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY--------------SKWEPFNNCLMN--GLRG 308 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~g 308 (954)
..+ .........+.......+.+|+||++..-.. .....+...+.. ...+
T Consensus 89 -------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 -------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp -------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred -------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 000 0112222334444456788999999943211 011223222221 2345
Q ss_pred cEEEEecCchhHHh-h-hc---CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 309 SKILVTTRKKTVAQ-M-ME---STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 309 s~iiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
..||.||....... . .. -...+.+...+.++-.+++..++....- ....++ ..|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhhH----HHHHHhcCCCc
Confidence 67777776654322 1 22 1347888988888888888776633211 111122 33788888877
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0032 Score=68.01 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=97.6
Q ss_pred cCCceeechhhhhHHHHHhhccCC-------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESS-------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
.-.++.|.++.+++|.+.+..+-. -.-...+-|.++|++|.|||.||+++++. ....| +.+..+.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~--- 251 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE--- 251 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG---
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH---
Confidence 345688999888888775532100 00224567899999999999999999984 32222 2333322
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCC------cc--C------hhhHHhhhc--CC
Q 036345 243 EFRVARAIIEALEGSASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDD------YS--K------WEPFNNCLM--NG 305 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~------~~--~------~~~l~~~l~--~~ 305 (954)
+... ...+.+.....+... -...+++|++|++...- .. . ...+...+. ..
T Consensus 252 -----------l~sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 252 -----------LIQK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp -----------GCCS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred -----------hhhc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 1111 111222233333332 24568999999984310 00 0 111222222 12
Q ss_pred CCCcEEEEecCchhHHh-hh-c--C-cceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 306 LRGSKILVTTRKKTVAQ-MM-E--S-TDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 306 ~~gs~iiiTtr~~~v~~-~~-~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
..+..||.||...+... .+ . . ...+++..-+.++..++|..+.-.-. ....-++. .|++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl~----~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNLE----TLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCHH----HHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCHH----HHHHhCCCCC
Confidence 34556777776554322 11 1 1 34688888888888889987663222 12222343 4777787754
No 232
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.97 E-value=0.00044 Score=73.13 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=34.2
Q ss_pred hhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccc-cccceEEEEEeC
Q 036345 179 EEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVM-NSFEIRMWVCVS 238 (954)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s 238 (954)
...+.+.+++..... .....+.|+|++|+|||+||+.+++. .. ..-..+++++++
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHH
Confidence 344455556654321 12457889999999999999999884 22 222345556543
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.94 E-value=0.00028 Score=73.33 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=81.1
Q ss_pred CCceeechhhhhHHHHHhhccCCC------CCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQ------QPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF 244 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 244 (954)
-.+++|.+..++.+.+.+..-... .....+-+.|+|++|+|||+||+.+++. ....|- .+..+.-.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI--- 81 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT---
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH---
Confidence 457999998888877765421000 0011223779999999999999999873 222221 11111100
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc---------------cChhhHHhhhcC---CC
Q 036345 245 RVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY---------------SKWEPFNNCLMN---GL 306 (954)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~---------------~~~~~l~~~l~~---~~ 306 (954)
....+. ....... .+......+..+|+|||+..-.. .....+...+.. ..
T Consensus 82 -------~~~~~~--~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 82 -------EMFVGL--GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp -------TSCSSS--CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred -------Hhhcch--HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 000010 0111111 12222234568999999943211 112223332221 11
Q ss_pred CCcEEEEecCchhHHh-h-hc---CcceEeCCCCCHHHHHHHHHHHH
Q 036345 307 RGSKILVTTRKKTVAQ-M-ME---STDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 307 ~gs~iiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
....||.||....... . .. -...+.+...+.++..+++...+
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2356777776553211 1 11 13467888889988888887765
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.88 E-value=0.0015 Score=74.87 Aligned_cols=165 Identities=14% Similarity=0.165 Sum_probs=78.0
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
.+++|.+...+.+.+.+.-..-.......++.++|++|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 457888877777655432111000113458999999999999999999873 22222 2233333222221111111
Q ss_pred HHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCcc----ChhhHHhhhcCCC---------------CCcEEE
Q 036345 252 EALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYS----KWEPFNNCLMNGL---------------RGSKIL 312 (954)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~ii 312 (954)
..++.. .......+... ....-+++||++..-... ....+...+.... ....||
T Consensus 156 ~~ig~~------~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGAM------PGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhccC------chHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111100 01111112211 223348889999643322 1233333332111 334667
Q ss_pred EecCchhH-Hh-hhcCcceEeCCCCCHHHHHHHHHHHH
Q 036345 313 VTTRKKTV-AQ-MMESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 313 iTtr~~~v-~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
.||..... .. .......+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 67665331 11 11122478999999999888887754
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.86 E-value=0.0015 Score=78.88 Aligned_cols=135 Identities=15% Similarity=0.201 Sum_probs=72.4
Q ss_pred CceeechhhhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. .. ...+.++.+.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 4588999888888776653321 11224467999999999999999999873 21 2234444443211100
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEecC
Q 036345 249 AIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVTTR 316 (954)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiTtr 316 (954)
...+.+..++....+. ...+...+ +...-+|+||++.....+....+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0001111111111111 11122222 2445799999997655555556665554321 2355777775
Q ss_pred c
Q 036345 317 K 317 (954)
Q Consensus 317 ~ 317 (954)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 236
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.84 E-value=0.0022 Score=78.29 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=71.6
Q ss_pred CceeechhhhhHHHHHhhccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVAR 248 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 248 (954)
..++|.+..++.+...+..... ........+.|+|+.|+|||++|+.+.+. ....-...+.++++.-.... ..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~~- 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AV- 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-GG-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-HH-
Confidence 3579999988888877754321 11223468899999999999999999873 21111123444444322110 00
Q ss_pred HHHHHhhcCCCC---cccHHHHHHHHHHHhcCceeEEEecCCCCCCccChhhHHhhhcCCC-----------CCcEEEEe
Q 036345 249 AIIEALEGSASN---LGELQSLLQRIQTSIAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGL-----------RGSKILVT 314 (954)
Q Consensus 249 ~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iiiT 314 (954)
..+.+..++ ......+...+. ....-+|+||++.....+....|...+..+. .+..||+|
T Consensus 634 ---s~l~g~~~~~~G~~~~g~l~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 634 ---SRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp ---GGC--------------CHHHHHH---HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred ---HHHcCCCCCCcCccccchHHHHHH---hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 011110000 000011222222 1234589999996655555566666655431 34557888
Q ss_pred cCc
Q 036345 315 TRK 317 (954)
Q Consensus 315 tr~ 317 (954)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.78 E-value=0.0056 Score=65.65 Aligned_cols=153 Identities=13% Similarity=0.094 Sum_probs=85.2
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHH
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAII 251 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 251 (954)
+.++|++..++.+...+.... -+.++|++|+|||+||+.+.+. ....| ..+..+......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCcee
Confidence 468899999988888776432 4889999999999999999873 22222 2334433333332211100
Q ss_pred HHhhcCCCCcccHHHHHHHHHHHhcC--ceeEEEecCCCCCCccChhhHHhhhcCC-----------CCCcEEEEecCch
Q 036345 252 EALEGSASNLGELQSLLQRIQTSIAG--KKFLLVLDDMWTDDYSKWEPFNNCLMNG-----------LRGSKILVTTRKK 318 (954)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiiTtr~~ 318 (954)
.....+.. ....+ ...++++|++..........+...+... .....|+.|+...
T Consensus 94 ---~~~~~~~~----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 ---YNQHKGNF----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp ---EETTTTEE----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ---ecCCCCce----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000000 00001 1258999999665544444454444321 2344555565522
Q ss_pred h------HHh-hhcCcc-eEeCCCCCHHHHHHHHHHHHcC
Q 036345 319 T------VAQ-MMESTD-VFSIKELSKQECWSLFKRFAFF 350 (954)
Q Consensus 319 ~------v~~-~~~~~~-~~~l~~L~~~~~~~lf~~~~~~ 350 (954)
. +.. ...-.. .+.+.+.+.++-.+++.+....
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1 111 112222 5889999999999999887643
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.78 E-value=0.0069 Score=71.63 Aligned_cols=181 Identities=10% Similarity=0.076 Sum_probs=98.1
Q ss_pred CCceeechhhhhHHHHHhhc----cC---CCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKLLC----ES---SQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
-.++.|.++.+++|.+.+.- +. .-.-..++-|.++|++|+|||+||+.+++. ...+ .+.|+.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH----
Confidence 34688998888888776532 11 001234567899999999999999999984 3322 23343221
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCC------ccCh-----hhHHhhhcC--CCCCcE
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDD------YSKW-----EPFNNCLMN--GLRGSK 310 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~~-----~~l~~~l~~--~~~gs~ 310 (954)
+.....+ .....+...+....+..+.+|+||++..-- .... ..+...+.. ...+..
T Consensus 274 ----------l~sk~~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ----------IMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HHSSCTT-HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ----------hhcccch-HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1111111 111223333333445678999999984311 0111 112222221 123445
Q ss_pred EEEecCchh-HHhhhc----CcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChH
Q 036345 311 ILVTTRKKT-VAQMME----STDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPL 376 (954)
Q Consensus 311 iiiTtr~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 376 (954)
||.||.... +-..+. -...+++...+.++-.++|..+.-.... ...-++. .|++++.|.--
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl~----~lA~~T~Gfsg 408 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLE----QVANETHGHVG 408 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCHH----HHHHHCCSCCH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCHH----HHHHhcCCCCH
Confidence 555665543 222221 1457899999999999999876532211 1222333 47888887643
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.77 E-value=0.0064 Score=63.71 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999984
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.71 E-value=0.00066 Score=70.49 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=44.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEe--CCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCV--SDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIA 276 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 276 (954)
.+++.|+|++|+||||||.+++.. .-..++|+++ .+..+. ...+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 457789999999999999998763 1123567776 332111 01345556666666665
Q ss_pred CceeEEEecCCC
Q 036345 277 GKKFLLVLDDMW 288 (954)
Q Consensus 277 ~kr~LlVlDdvw 288 (954)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 555 99999993
No 241
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.52 E-value=0.035 Score=60.60 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=74.0
Q ss_pred CCCCCCCEEEEeeecCCCCCCcchhcccCccEEEEeCcCCCCcCCCCCCCCCCceEeecCCCCceEeCcccccCCCCCCC
Q 036345 772 RPNPNIEVLKIFQYKGKTVFPSWIMSLCKLKVLLLSFCIKCEIMPPLGKLPSLEVLSIWNMNSVKTVGDEFLGIGGDNGT 851 (954)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~c~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 851 (954)
..+.+|+.+.+..+. ...-...+..+.+|+.+.+..+-..-.-..+..+.+|+.+.+.. .++.++...+.
T Consensus 214 ~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~------- 283 (379)
T 4h09_A 214 SYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCS------- 283 (379)
T ss_dssp TTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTT-------
T ss_pred ccccccceeeeccce-eEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc--cceeccccccc-------
Confidence 345566666654321 11012233466778888876542111122366778888888754 25566544332
Q ss_pred CcCCcccccCcccceeeccccccccccccccccccccccccceecccccccCcCCCC-CCCCCCCcceEEEec
Q 036345 852 SATSSVNVAFRKLKELAFWGLYEWEEWDFGEEDNITVMPQLNSLKIENCSKLKSLPD-QLLRSTTLENLEIKK 923 (954)
Q Consensus 852 ~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 923 (954)
.+++|+.+.+.+. .++.+.. ..+..+.+|+.+.|.. .++.++. .+.+|++|+.+.|..
T Consensus 284 --------~c~~L~~i~l~~~-~i~~I~~---~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 --------GCSNLTKVVMDNS-AIETLEP---RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp --------TCTTCCEEEECCT-TCCEECT---TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred --------ccccccccccccc-ccceehh---hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 5778888887542 1333322 3355778899998854 3666665 356788898888743
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.52 E-value=0.0079 Score=60.00 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=50.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhc------------CCCCcccHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEG------------SASNLGELQS 266 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~------------~~~~~~~~~~ 266 (954)
..++.|+|.+|+||||||..++. ..-..++|++....++...+.. +.+.++. ......+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999876 1224678888776566655443 3332211 1111122233
Q ss_pred HHHHHHHHhcCceeEEEecCCC
Q 036345 267 LLQRIQTSIAGKKFLLVLDDMW 288 (954)
Q Consensus 267 ~~~~l~~~l~~kr~LlVlDdvw 288 (954)
....++..+..+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4444444444446689999873
No 243
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.47 E-value=0.018 Score=59.51 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=80.0
Q ss_pred CCceeechhhhhHHHHHhhccC---------CCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 036345 171 VSEVRGRDEEKNSLKSKLLCES---------SQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF 241 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 241 (954)
-.++.|.++.+++|.+.+..+- +- ....+ +.|+|++|+||||||+.++... .. ..+++..+.-.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l-~~~~G-vlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~ 81 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGL-VTPAG-VLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELL 81 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC-CCCSE-EEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCCe-EEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHH
Confidence 3567888887777766442110 00 11122 8999999999999999998732 11 23444432211
Q ss_pred CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHH-hcCceeEEEecCCCCCCc-------cC----hhhHHhhhcCC--CC
Q 036345 242 DEFRVARAIIEALEGSASNLGELQSLLQRIQTS-IAGKKFLLVLDDMWTDDY-------SK----WEPFNNCLMNG--LR 307 (954)
Q Consensus 242 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~-------~~----~~~l~~~l~~~--~~ 307 (954)
+. ...........+.+. -...+.++++|++..... .. ...+...+..+ ..
T Consensus 82 ~~----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 82 NM----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp SS----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred hh----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 10 000011111222222 134578999999943100 00 11122223222 23
Q ss_pred CcEEEEecCchhHHhh--h---cCcceEeCCCCCHHHHHHHHHHHH
Q 036345 308 GSKILVTTRKKTVAQM--M---ESTDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 308 gs~iiiTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
..-++.+|....+... . .-...+.++..+.++-.++|....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 3445566666554322 1 124578899999999999998765
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.45 E-value=0.016 Score=59.22 Aligned_cols=179 Identities=15% Similarity=0.107 Sum_probs=87.1
Q ss_pred cCCceeechhhhhHHHHHhhccCC-------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESS-------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD 242 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 242 (954)
.-.+++|.+..+.++.+....-.. +-.-... +.|+|++|+||||||+.++.. .. ...+.+...
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~---- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS---- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH----
Confidence 345788988766665543321100 0001112 899999999999999999874 22 122333211
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHh-cCceeEEEecCCCCC----------CccCh----hhHHhhhcCCC-
Q 036345 243 EFRVARAIIEALEGSASNLGELQSLLQRIQTSI-AGKKFLLVLDDMWTD----------DYSKW----EPFNNCLMNGL- 306 (954)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~----------~~~~~----~~l~~~l~~~~- 306 (954)
.+ ... .. .........+.+.. .....++++|++..- ....+ ..+...+..+.
T Consensus 84 --~~----~~~----~~--~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 --DF----VEM----FV--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp --HH----HHS----CT--THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred --HH----HHH----Hh--hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 110 00 01111122222222 234679999998310 00111 12222233222
Q ss_pred -CCcEEEEecCchhHHhh-h----cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 307 -RGSKILVTTRKKTVAQM-M----ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 307 -~gs~iiiTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
....++.||....+... . .-...+.++..+.++-.+++...+-... ......+ ..+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~----~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVDL----ALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC-CCcccCH----HHHHHHcCCCC
Confidence 22344455655544321 1 1244788999999988888887653211 1111122 24677777754
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.45 E-value=0.0087 Score=65.43 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.32 E-value=0.0071 Score=72.77 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=86.0
Q ss_pred CCceeechhhhhHHHHHhhccCC-------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESS-------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
-.+++|.+..+++|.+++..+-. -.-.....|.|+|++|+||||||+.++.. ....| +.+..+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH----
Confidence 35689999999999887753100 00123456899999999999999999884 22222 3333211
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCCCc------c-----ChhhHHhhhcC--CCCCcE
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTDDY------S-----KWEPFNNCLMN--GLRGSK 310 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~------~-----~~~~l~~~l~~--~~~gs~ 310 (954)
+...... .....+...+.........++++|++..-.. . ....+...+.. ...+..
T Consensus 274 ----------l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ----------IMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HSSSSTT-HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ----------hhhhhhh-hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 1111110 1111222233333345678999999832110 0 01122222222 123456
Q ss_pred EEEecCchhHH-hhhc---C-cceEeCCCCCHHHHHHHHHHHH
Q 036345 311 ILVTTRKKTVA-QMME---S-TDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 311 iiiTtr~~~v~-~~~~---~-~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
+|.||...... ..+. . ...+.+...+.++..+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66666554321 1111 1 3467888899999999998765
No 247
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.28 E-value=0.044 Score=58.87 Aligned_cols=157 Identities=10% Similarity=-0.078 Sum_probs=98.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHH-HhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQT-SIAG 277 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 277 (954)
..+..++|+.|.||++.|+.+.+.. ....|+....+......+.. ++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWN---------------------AIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHH---------------------HHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHH---------------------HHHHHhcCcCCcc
Confidence 4588999999999999998886631 11234322222233323332 22222221 2346
Q ss_pred ceeEEEecCCCC-CCccChhhHHhhhcCCCCCcEEEEecCc-------hhHHhhhc-CcceEeCCCCCHHHHHHHHHHHH
Q 036345 278 KKFLLVLDDMWT-DDYSKWEPFNNCLMNGLRGSKILVTTRK-------KTVAQMME-STDVFSIKELSKQECWSLFKRFA 348 (954)
Q Consensus 278 kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iiiTtr~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~ 348 (954)
++-++|+|++.. -....++.+...+....+++.+|+++.. ..+...+. ....++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999865 4456677788877766667777776643 23444333 35688999999999988887765
Q ss_pred cCCCCCCCchhHHHHHHHHHHhcCCChHHHHHH
Q 036345 349 FFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTI 381 (954)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 381 (954)
-..+-. --.+.+..+++.++|...++...
T Consensus 156 ~~~g~~----i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE----LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE----ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC----CCHHHHHHHHHHhchHHHHHHHH
Confidence 322211 11456777999999988877653
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.15 E-value=0.035 Score=57.63 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=88.0
Q ss_pred ccCCceeechhhhhHHHHHhhccCC-------CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 036345 169 INVSEVRGRDEEKNSLKSKLLCESS-------QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF 241 (954)
Q Consensus 169 ~~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 241 (954)
....+++|.+..++++.+....-.. +-.-... +.|+|+.|+||||||+.++.. .. ...+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~--- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS--- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH---
Confidence 3345789988776666544321100 0001112 899999999999999999874 22 122333321
Q ss_pred CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCceeEEEecCCCCC----------CccChh----hHHhhhcCCC-
Q 036345 242 DEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD----------DYSKWE----PFNNCLMNGL- 306 (954)
Q Consensus 242 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~----------~~~~~~----~l~~~l~~~~- 306 (954)
.+ .... .. .....+...++..-.....++|+||+..- ....+. .+...+..+.
T Consensus 108 ---~~----~~~~----~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 ---DF----VEMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp ---HH----HHST----TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred ---HH----HHHH----hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 00 00111112222222245679999998310 001111 1222222221
Q ss_pred -CCcEEEEecCchhHHhh--h---cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 307 -RGSKILVTTRKKTVAQM--M---ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 307 -~gs~iiiTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
....++.||....+... . .-...+.+...+.++-.+++..++-... ......+ ..+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~----~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVDL----ALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC-CCcccCH----HHHHHHcCCCC
Confidence 22334445555443221 1 2245788999999998888887653211 1111122 24777777755
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.07 E-value=0.0028 Score=62.90 Aligned_cols=114 Identities=14% Similarity=0.007 Sum_probs=61.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCC--cccHHHHHHHHHHHh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASN--LGELQSLLQRIQTSI 275 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 275 (954)
...++.|+|..|+||||++..+... ...+-..++.+..... .+ ...++++.++..... ....+++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4568999999999999999777653 3223223444433221 11 112333344322111 122344445555444
Q ss_pred cCcee-EEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchh
Q 036345 276 AGKKF-LLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKT 319 (954)
Q Consensus 276 ~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 319 (954)
.+.++ +||+|.+..-+.+..+.+.. +.+ .|..||+|.+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 44444 99999995433333333333 322 2778999998654
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.05 E-value=0.032 Score=62.57 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=92.0
Q ss_pred cCCceeechhhhhHHHHHhh---ccCC---CCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH
Q 036345 170 NVSEVRGRDEEKNSLKSKLL---CESS---QQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE 243 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 243 (954)
...+++|.+..+.++.+... .... -.-.-.+-+.|+|++|+||||||+.++.. .. ...+.++.+.-.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~-- 101 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFV-- 101 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGT--
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHH--
Confidence 34678999877766655432 2100 00011123899999999999999999874 22 123344433210
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC----ceeEEEecCCCCCCc----------cCh----hhHHhhhcCC
Q 036345 244 FRVARAIIEALEGSASNLGELQSLLQRIQTSIAG----KKFLLVLDDMWTDDY----------SKW----EPFNNCLMNG 305 (954)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdvw~~~~----------~~~----~~l~~~l~~~ 305 (954)
... .......+...++. ...++++|++..-.. ..+ ..+...+..+
T Consensus 102 ------------~~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 102 ------------EMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------SSC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------Hhh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 000 01112223333332 347999999942110 111 2222223222
Q ss_pred --CCCcEEEEecCchhHHhh--h---cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 036345 306 --LRGSKILVTTRKKTVAQM--M---ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLP 375 (954)
Q Consensus 306 --~~gs~iiiTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 375 (954)
..+..|+.||....+... . .-...+.+...+.++-.+++..++-.. ....... ...|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 234456666766654321 1 123578899999999889888765221 1111112 234777787765
No 251
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.99 E-value=0.013 Score=58.95 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=60.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC--------------------
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS-------------------- 259 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------------- 259 (954)
.+++|+|++|+|||||++.++.... ..-..++|+.... ....+...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 5899999999999999998875311 1112456665433 344443332 23321100
Q ss_pred ---CcccHHHHHHHHHHHhc---CceeEEEecCCCCC---CccChhhHHhhhcC--CCCCcEEEEecCch
Q 036345 260 ---NLGELQSLLQRIQTSIA---GKKFLLVLDDMWTD---DYSKWEPFNNCLMN--GLRGSKILVTTRKK 318 (954)
Q Consensus 260 ---~~~~~~~~~~~l~~~l~---~kr~LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~iiiTtr~~ 318 (954)
...+.+++...+.+.+. .+..+||+|..-.. +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134455555544442 22349999998421 22233344333332 13577888888765
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.94 E-value=0.017 Score=55.29 Aligned_cols=115 Identities=19% Similarity=0.114 Sum_probs=60.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC---CCCHHHHHHHHHHHhh----cCC--CCc-------cc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD---PFDEFRVARAIIEALE----GSA--SNL-------GE 263 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~----~~~--~~~-------~~ 263 (954)
..|.|++..|.||||+|--..- +..++=..+.++..-+ ......++..+. +. +.. ... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 4577777788999999954433 1222222334443222 223333333320 00 000 000 01
Q ss_pred HHHHHHHHHHHhcCcee-EEEecCCCC---CCccChhhHHhhhcCCCCCcEEEEecCch
Q 036345 264 LQSLLQRIQTSIAGKKF-LLVLDDMWT---DDYSKWEPFNNCLMNGLRGSKILVTTRKK 318 (954)
Q Consensus 264 ~~~~~~~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iiiTtr~~ 318 (954)
........++.+.+.+| |||||++-. -..-..+.+...+........||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12334445556655555 999999821 12344566777776666778999999985
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.87 E-value=0.018 Score=61.49 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC-----CcccHHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS-----NLGELQSLLQRIQ 272 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 272 (954)
.-.++.|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999988763 22222357888877766654 4455543311 1234555555555
Q ss_pred HHhc-CceeEEEecCCC
Q 036345 273 TSIA-GKKFLLVLDDMW 288 (954)
Q Consensus 273 ~~l~-~kr~LlVlDdvw 288 (954)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5554 445689999983
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.77 E-value=0.02 Score=58.09 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=51.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhhcCC---------CCcccHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMN----SFEIRMWVCVSDPFDEFRVARAIIEALEGSA---------SNLGELQ 265 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 265 (954)
-.++.|+|++|+|||||+..++....... .-..++|++....+....+ .++++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999998876311111 1246888887765555443 33444443221 0011122
Q ss_pred ---HHHHHHHHHhc-CceeEEEecCCC
Q 036345 266 ---SLLQRIQTSIA-GKKFLLVLDDMW 288 (954)
Q Consensus 266 ---~~~~~l~~~l~-~kr~LlVlDdvw 288 (954)
.....+.+.+. .+.-+||+|++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22333444443 456788899883
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.76 E-value=0.033 Score=59.67 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=39.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMN----SFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
...++.|+|.+|+||||||..++....... .-..++|++....++...+. ++++.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 557999999999999999988776311111 22468899988877776654 3444443
No 256
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.73 E-value=0.085 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 257
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.64 E-value=0.031 Score=59.39 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=52.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCccccc----ccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC---------CcccHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMN----SFEIRMWVCVSDPFDEFRVARAIIEALEGSAS---------NLGELQ 265 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 265 (954)
..++.|+|.+|+||||||.+++....... .-..++|++....++...+. ++++.++.... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 35899999999999999988765311110 12468899988877776654 34555543210 011122
Q ss_pred ---HHHHHHHHHhc--CceeEEEecCC
Q 036345 266 ---SLLQRIQTSIA--GKKFLLVLDDM 287 (954)
Q Consensus 266 ---~~~~~l~~~l~--~kr~LlVlDdv 287 (954)
.+...+.+.++ .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 23344444443 34567888877
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.62 E-value=0.025 Score=60.17 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=53.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCccccc---------cc-----ceEEEEEeCCCCCHHHHHHHHHHHhhcCC-----
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMN---------SF-----EIRMWVCVSDPFDEFRVARAIIEALEGSA----- 258 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----- 258 (954)
...++.|+|.+|+||||||.+++....... .. ..++|++....++..++.. +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 456899999999999999988765311110 11 4688999888777776653 445554321
Q ss_pred ----CCcccHH---HHHHHHHHHhcC--ceeEEEecCC
Q 036345 259 ----SNLGELQ---SLLQRIQTSIAG--KKFLLVLDDM 287 (954)
Q Consensus 259 ----~~~~~~~---~~~~~l~~~l~~--kr~LlVlDdv 287 (954)
....+.+ .+...+.+.++. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0011122 233444444433 4457788877
No 259
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.58 E-value=0.055 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999774
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.57 E-value=0.029 Score=60.33 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=53.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC-----CcccHHHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS-----NLGELQSLLQRIQT 273 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 273 (954)
..++.|+|.+|+||||||..++.. ....-..++|++....++.. .++.++.... ...+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 347889999999999999887663 22222468899988766643 2444443211 12345666666666
Q ss_pred Hhc-CceeEEEecCCC
Q 036345 274 SIA-GKKFLLVLDDMW 288 (954)
Q Consensus 274 ~l~-~kr~LlVlDdvw 288 (954)
..+ .+.-+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 554 334589999983
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.50 E-value=0.011 Score=57.95 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=32.7
Q ss_pred chhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 177 RDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
|++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556777777776532 24567999999999999999998876
No 262
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.46 E-value=0.086 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
-.+++|+|+.|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 263
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.43 E-value=0.033 Score=59.65 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=52.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC-----CcccHHHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS-----NLGELQSLLQRIQT 273 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 273 (954)
..++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 458999999999999999888753 22222467899988766643 2444543211 12244555555554
Q ss_pred Hhc-CceeEEEecCC
Q 036345 274 SIA-GKKFLLVLDDM 287 (954)
Q Consensus 274 ~l~-~kr~LlVlDdv 287 (954)
..+ .+.-+||+|.+
T Consensus 134 l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 134 LVRSGALDIIVIDSV 148 (349)
T ss_dssp HHTTTCCSEEEEECG
T ss_pred HHhcCCCCEEEEcCh
Confidence 443 34568999998
No 264
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.40 E-value=0.038 Score=57.09 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=52.3
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccc--cceEEEEEeCCCCCHHHHHHHHHHHhhcCCCC-----cccHHHH-HHHHH
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNS--FEIRMWVCVSDPFDEFRVARAIIEALEGSASN-----LGELQSL-LQRIQ 272 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~ 272 (954)
++-|.|++|+||||||.+++.. .... -..++||+....++.. -+++++.+... ..+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6899999999999999777653 2222 2468899988877754 26667654221 2344444 33332
Q ss_pred HH--h-cCceeEEEecCCC
Q 036345 273 TS--I-AGKKFLLVLDDMW 288 (954)
Q Consensus 273 ~~--l-~~kr~LlVlDdvw 288 (954)
.. + +++.-+||+|-+-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 3566799999983
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.34 E-value=0.022 Score=60.98 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=50.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC-----CcccHHHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS-----NLGELQSLLQRIQT 273 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 273 (954)
.+++.|.|.+|+||||||.+++.. ....-..++|++....++.. .++.++.... ...+.+.....+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 358999999999999999887763 22222368899988776643 2344443211 11234444444444
Q ss_pred Hhc-CceeEEEecCC
Q 036345 274 SIA-GKKFLLVLDDM 287 (954)
Q Consensus 274 ~l~-~kr~LlVlDdv 287 (954)
..+ .+.-+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 432 44558999988
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.12 E-value=0.099 Score=52.84 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999865
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.02 E-value=0.032 Score=58.15 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+++|+|++|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999988876
No 268
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.82 E-value=0.017 Score=55.59 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=72.7
Q ss_pred cccCcceEEEeeccCCccc-cCCCchhhhcCCCceeEEEecCCCccccccccccchhhhccCcCceeeccCcccc-----
Q 036345 555 RYAKKLRSLFLVANGSFKV-LSPVLPGLFDQLTFLRTLKITGESAGVEKSIREIPKEIEKLKHLRFLKLSQVDLE----- 628 (954)
Q Consensus 555 ~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~----- 628 (954)
..-+.|+.|+++++..+.. -...+...+..-+.|+.|+|++|.+.. .....|.+.+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd-~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD-SEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH-HHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh-HHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 4556788888876421110 001133445667788888888885542 233456666777788899999888876
Q ss_pred cccccccCCCCccEEeccccCC--Cc-----cccccccCCCCCCEEeccCc
Q 036345 629 ELPETCCELVNLQTLDIEACGS--LK-----RLPQGIGKLVNLRHLMISHN 672 (954)
Q Consensus 629 ~lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~l~~L~~L~l~~~ 672 (954)
.+-+.+..-..|++|+|++|.. +. .+...+..-+.|..|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4555666667788888876532 22 13334455567778877654
No 269
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.82 E-value=0.12 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999975
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.80 E-value=0.021 Score=56.36 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=27.6
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+++|.+.+... .+...+|+|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23567999999999999999998876
No 271
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.68 E-value=0.047 Score=57.31 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=31.1
Q ss_pred eechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 175 RGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|....+..+...+..... .....+|+|.|+.|+||||+++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444445555544443322 34678999999999999999998865
No 272
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.66 E-value=0.067 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|.+|+|||||+..++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 348999999999999999988764
No 273
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.60 E-value=0.014 Score=61.84 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=50.4
Q ss_pred HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCccc-ccccceEEEEEeCCCCCHHHHHHHHHHHhhc----C
Q 036345 183 SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDV-MNSFEIRMWVCVSDPFDEFRVARAIIEALEG----S 257 (954)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~----~ 257 (954)
++++.+..-. ....++|+|..|+|||||++.+.+.... ...+. ++++-+++.... ..++.+.+.. .
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~E---v~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEE---VTEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHH---HHHHHTTCSSEEEEE
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHH---HHHHHHHhCeEEEEe
Confidence 3455555432 3347899999999999999988763111 11223 345666654322 1223333311 0
Q ss_pred CCCcccHHH-----HHHHHHHHh--cCceeEEEecCC
Q 036345 258 ASNLGELQS-----LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 258 ~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..+...... ..-.+.+++ +++.+||++||+
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 111111111 111122333 589999999998
No 274
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.49 E-value=0.23 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999764
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.44 E-value=0.02 Score=55.59 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999874
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.42 E-value=0.11 Score=55.59 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=32.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCccccccc----ceEEEEEeCCCCCHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSF----EIRMWVCVSDPFDEFR 245 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~ 245 (954)
.-.++.|+|+.|+|||||+..++......... ..++|++....+....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 45799999999999999999887632111111 2458888766554333
No 277
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.29 E-value=0.18 Score=50.28 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=30.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCccc---cc-ccceEEEEEeCCCCCH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDV---MN-SFEIRMWVCVSDPFDE 243 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~ 243 (954)
.-.+++|+|+.|+|||||++.++..... .. .-...+|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4469999999999999999998652111 11 1235778776554443
No 278
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.28 E-value=0.028 Score=63.09 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=35.8
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+.++|++..++.+...+.... -|.++|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 458899998988887776432 5889999999999999999884
No 279
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.27 E-value=0.028 Score=58.45 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.....+|+|+|..|+||||||+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999888763
No 280
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.24 E-value=0.14 Score=53.38 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=46.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHH--HHHHHHHHHhhcC---CCCcccHHH-HHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEF--RVARAIIEALEGS---ASNLGELQS-LLQRI 271 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~-~~~~l 271 (954)
...+++|+|++|+||||++..++.. ....-..+.++... .+... +-+...++..+.. .....+... ....+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 5689999999999999999988763 22222234555543 23222 1223334443321 111112222 23345
Q ss_pred HHHhcCceeEEEecCC
Q 036345 272 QTSIAGKKFLLVLDDM 287 (954)
Q Consensus 272 ~~~l~~kr~LlVlDdv 287 (954)
...+..+.=++|+|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 5545455558888976
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.23 E-value=0.26 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999987765
No 282
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.18 E-value=0.02 Score=54.55 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=18.3
Q ss_pred EEEEEecCCchHHHHHHHH
Q 036345 201 VISLVGMGGIGKTTLAQFA 219 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v 219 (954)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.18 E-value=0.14 Score=55.67 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=36.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCccc----ccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDV----MNSFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
-.++.|+|++|+|||||+..++-.-.. ...-..++|++....+....+ ..+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 458999999999999999966421111 112346888887766655543 33555554
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.12 E-value=0.021 Score=54.72 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.08 E-value=0.057 Score=59.25 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=28.1
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF 241 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 241 (954)
.++|+|..|+|||||++.+..+.... .-+..+++.+.+..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGert 192 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERT 192 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCc
Confidence 58899999999999999887742211 22345666666643
No 286
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.02 E-value=0.006 Score=58.84 Aligned_cols=22 Identities=23% Similarity=0.039 Sum_probs=18.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999955544
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.00 E-value=0.19 Score=53.04 Aligned_cols=26 Identities=38% Similarity=0.321 Sum_probs=22.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+...+++|+|+.|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988763
No 288
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.99 E-value=0.023 Score=53.98 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|.|.|+.|+||||+|+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.98 E-value=0.022 Score=54.64 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.98 E-value=0.024 Score=54.26 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.94 E-value=0.028 Score=55.07 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+|+|+|+.|+||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 292
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.91 E-value=0.042 Score=58.01 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=31.2
Q ss_pred eechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 175 RGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
|+-+.-.+++++.+...-. .+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3344555666666543222 23456789999999999999998876
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.89 E-value=0.022 Score=55.74 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 294
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.89 E-value=0.045 Score=56.91 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhc
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.....+|.|.|++|+||||+|+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999976
No 295
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.80 E-value=0.039 Score=53.13 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=66.7
Q ss_pred chhhhcCCCceeEEEecCC-CccccccccccchhhhccCcCceeeccCcccc-----cccccccCCCCccEEeccccCCC
Q 036345 578 LPGLFDQLTFLRTLKITGE-SAGVEKSIREIPKEIEKLKHLRFLKLSQVDLE-----ELPETCCELVNLQTLDIEACGSL 651 (954)
Q Consensus 578 ~~~~~~~l~~Lr~L~L~~~-~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l 651 (954)
+...+.+-+.|+.|+|+++ .+. +.....+.+.+..-..|+.|+|++|.|. .+.+.+..-..|++|+|+.|. +
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~ig-d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVS-KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSC-HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred HHHHHhcCCCccEEECCCCCCCC-HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 3444567788999999975 333 2344556677778889999999999986 456666777889999999887 4
Q ss_pred c-----cccccccCCCCCCEEeccCc
Q 036345 652 K-----RLPQGIGKLVNLRHLMISHN 672 (954)
Q Consensus 652 ~-----~lp~~i~~l~~L~~L~l~~~ 672 (954)
. .+-..+..-+.|++|+++++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3 23344555567888888754
No 296
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.73 E-value=0.046 Score=55.72 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=28.3
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 134568999999999999999999876
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.60 E-value=0.024 Score=53.91 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.59 E-value=0.037 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.55 E-value=0.036 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.54 E-value=0.031 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=20.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997554
No 301
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.48 E-value=0.29 Score=51.52 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=37.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEAL 254 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 254 (954)
..++.|.|.+|+||||+|..++.+....+ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 45889999999999999988765322222 567777655 56777777776654
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.47 E-value=0.028 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999999976
No 303
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.46 E-value=0.17 Score=53.54 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=37.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
..++.|.|.+|+||||+|..++.+... .=..++|++. +.+..++...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 358899999999999999888764221 2235666654 4577788877766543
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.42 E-value=0.022 Score=54.65 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|.|+|+.|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 305
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.41 E-value=0.04 Score=59.76 Aligned_cols=50 Identities=26% Similarity=0.232 Sum_probs=35.4
Q ss_pred ceeechhhhhHHHHHhhcc-------C--CCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 173 EVRGRDEEKNSLKSKLLCE-------S--SQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789888888887776210 0 000113456889999999999999999873
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.40 E-value=0.033 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.37 E-value=0.037 Score=53.65 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.35 E-value=0.031 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 309
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.35 E-value=0.03 Score=60.44 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=32.9
Q ss_pred CCceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 171 VSEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-.+++|.+..++.+........ ..-+.|+|++|+|||++|+.+++.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 3568999886665544443222 123889999999999999999873
No 310
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.29 E-value=0.036 Score=59.33 Aligned_cols=110 Identities=13% Similarity=0.185 Sum_probs=59.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH--HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE--FRVARAIIEALEGSASNLGELQSLLQRIQTSIAG 277 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 277 (954)
.+++|+|+.|+||||+.+.+... +.......+ +++.++... ... ...+.+... ..+.......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~~----~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESK-KCLVNQREV----HRDTLGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCS-SSEEEEEEB----TTTBSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhcc-ccceeeeee----ccccCCHHHHHHHHhhh
Confidence 49999999999999999988662 211111122 222221110 000 000000000 00112334578888888
Q ss_pred ceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHh
Q 036345 278 KKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 278 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 322 (954)
.+=+|++|++- +.+.+..+.... ..|..||+||...+.+.
T Consensus 196 ~PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 88899999994 444455444332 23666899998776554
No 311
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.28 E-value=0.043 Score=54.15 Aligned_cols=24 Identities=42% Similarity=0.374 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999877
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.26 E-value=0.041 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 313
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.26 E-value=0.039 Score=52.70 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988763
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.25 E-value=0.036 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.19 E-value=0.049 Score=53.59 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999773
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.12 E-value=0.031 Score=53.99 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.11 E-value=0.041 Score=56.07 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998876
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.10 E-value=0.047 Score=53.46 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 319
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.05 E-value=0.26 Score=53.83 Aligned_cols=23 Identities=39% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..++.|+|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 320
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.04 E-value=0.033 Score=54.59 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.98 E-value=0.043 Score=55.89 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|.|+|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999976
No 322
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.94 E-value=0.044 Score=52.91 Aligned_cols=24 Identities=17% Similarity=0.481 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999876
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.91 E-value=0.042 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 324
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.91 E-value=0.22 Score=55.08 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=22.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....+++|+|..|+|||||++.++..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 35679999999999999999998763
No 325
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.91 E-value=0.033 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 326
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.89 E-value=0.051 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999876
No 327
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.88 E-value=0.047 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999877
No 328
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.88 E-value=0.1 Score=46.64 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=18.9
Q ss_pred cCceeeccCccccccccc-ccCCCCccEEeccccC
Q 036345 616 HLRFLKLSQVDLEELPET-CCELVNLQTLDIEACG 649 (954)
Q Consensus 616 ~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 649 (954)
+|++|+|++|.|+.+|.. +..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455666666666655543 3455555555555544
No 329
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.86 E-value=0.28 Score=51.95 Aligned_cols=36 Identities=19% Similarity=0.003 Sum_probs=26.9
Q ss_pred hHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 182 NSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 182 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-++++.+..-. .-..++|+|.+|+|||+|++.+.+.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 35666665432 3346899999999999999988874
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.85 E-value=0.042 Score=53.98 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 331
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.84 E-value=0.058 Score=50.22 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 332
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.81 E-value=0.036 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 333
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.80 E-value=0.035 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999886
No 334
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.80 E-value=0.047 Score=53.52 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 335
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.80 E-value=0.21 Score=54.97 Aligned_cols=64 Identities=19% Similarity=0.091 Sum_probs=41.4
Q ss_pred HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHH
Q 036345 183 SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD-EFRVARAIIE 252 (954)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~ 252 (954)
++++.|..-. .-..++|.|..|+|||+|++.+.++. .+.+-+.++++-+.+... +.++..++.+
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 3455554332 33468999999999999998887741 123446778888877653 3445555443
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.80 E-value=0.058 Score=51.97 Aligned_cols=25 Identities=36% Similarity=0.325 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.76 E-value=0.05 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.68 E-value=0.055 Score=53.12 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 339
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.68 E-value=0.047 Score=53.47 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999987
No 340
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.67 E-value=0.55 Score=52.49 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=20.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988875
No 341
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.65 E-value=0.057 Score=56.72 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999998876
No 342
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.63 E-value=0.041 Score=52.42 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 343
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.62 E-value=0.05 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999977
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.59 E-value=0.058 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+||.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.59 E-value=0.047 Score=51.20 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998773
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.55 E-value=0.051 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.54 E-value=0.06 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 348
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.52 E-value=0.051 Score=54.33 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 349
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.46 E-value=0.37 Score=54.64 Aligned_cols=55 Identities=11% Similarity=-0.035 Sum_probs=36.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhh
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALE 255 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 255 (954)
...++.|.|.+|+||||||..++.+.... +=..++|++... +..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 34588999999999999998877642111 123567776544 56777777665443
No 350
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.44 E-value=0.057 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 351
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.40 E-value=0.34 Score=53.02 Aligned_cols=24 Identities=42% Similarity=0.390 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..++|.++|++|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 352
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.40 E-value=0.33 Score=50.46 Aligned_cols=87 Identities=17% Similarity=0.045 Sum_probs=45.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC-CHHHHHHHHHHHhhcC---CCCcccHHHHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF-DEFRVARAIIEALEGS---ASNLGELQSLLQRIQTS 274 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 274 (954)
..+++++|.+|+||||++..++.. ....-..+.++...... ...+.+....+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 578999999999999999888763 22222245555543222 2222333344443322 11112333333333333
Q ss_pred hc-CceeEEEecCC
Q 036345 275 IA-GKKFLLVLDDM 287 (954)
Q Consensus 275 l~-~kr~LlVlDdv 287 (954)
++ ..-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 33237888876
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.37 E-value=0.06 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 354
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.35 E-value=0.32 Score=53.23 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCC-HHHHHHHHHH
Q 036345 183 SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFD-EFRVARAIIE 252 (954)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~ 252 (954)
++++.|..-. .-..++|+|..|+|||+|++.+.++. .+.+-+.++++-+.+... +.++..++.+
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 4555555332 33468999999999999998887741 123335677777777543 3445555544
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.28 E-value=0.062 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|.|.|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999876
No 356
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.26 E-value=0.06 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 357
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.26 E-value=0.16 Score=53.79 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=54.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHhcCce
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSASNLGELQSLLQRIQTSIAGKK 279 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 279 (954)
.+++|+|+.|.|||||++.+..-.. .-...+.+.-......... . +.+..-. + ........+...+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhhCC
Confidence 3799999999999999999987321 1233444432221110000 0 0000000 0 11223445667777778
Q ss_pred eEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhH
Q 036345 280 FLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTV 320 (954)
Q Consensus 280 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v 320 (954)
=++++|++-. .+.++.+. .+..+ +.-+|+||.....
T Consensus 242 ~ilildE~~~--~e~~~~l~-~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFYN-VLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCS--THHHHHHH-HHHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCCh--HHHHHHHH-HHhcC--CCEEEEEEcccHH
Confidence 8899999943 33344333 23322 2236667665443
No 358
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.21 E-value=0.12 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3557999999999999999998876
No 359
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.21 E-value=0.071 Score=54.03 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998866
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.20 E-value=0.081 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 361
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.18 E-value=0.09 Score=52.41 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999888764
No 362
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.18 E-value=0.32 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..++|.++|.+|+||||++..++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999988775
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.18 E-value=0.061 Score=56.23 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999876
No 364
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.18 E-value=0.18 Score=45.00 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=42.9
Q ss_pred ceeeccCcccc--cccccccCCCCccEEeccccCCCcccccc-ccCCCCCCEEeccCccc
Q 036345 618 RFLKLSQVDLE--ELPETCCELVNLQTLDIEACGSLKRLPQG-IGKLVNLRHLMISHNVY 674 (954)
Q Consensus 618 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 674 (954)
..++.+++.++ .+|..+ -.+|++|+|++|. +..+|.+ +..+++|+.|++.+|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 36777788887 888653 2479999999988 8888866 57899999999998853
No 365
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.16 E-value=0.05 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 366
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.16 E-value=0.067 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999773
No 367
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.15 E-value=0.048 Score=52.44 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 368
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.15 E-value=0.31 Score=50.63 Aligned_cols=24 Identities=38% Similarity=0.277 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 369
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.15 E-value=0.069 Score=56.09 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=26.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD 239 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 239 (954)
++.+||+|.|-|||||||.+..+.-- ....=..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 36789999999999999998655431 111222355566553
No 370
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.13 E-value=0.043 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=16.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 371
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.13 E-value=0.065 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999977
No 372
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.11 E-value=0.1 Score=58.54 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888763
No 373
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.10 E-value=0.27 Score=51.66 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+++|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 374
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.09 E-value=0.062 Score=53.22 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4468999999999999999998763
No 375
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.93 E-value=0.067 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 376
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.93 E-value=0.11 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999873
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.86 E-value=0.058 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.84 E-value=0.079 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 379
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.81 E-value=0.12 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 380
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.80 E-value=0.37 Score=53.54 Aligned_cols=53 Identities=8% Similarity=-0.053 Sum_probs=36.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHh
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEAL 254 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 254 (954)
..++.|.|.+|+||||+|..++.+.... .-..++|++.. .+...+...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 4588999999999999998877642211 12356776654 46677777766544
No 381
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.79 E-value=0.074 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999985
No 382
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.78 E-value=0.092 Score=54.38 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999873
No 383
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.77 E-value=0.11 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.100 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.76 E-value=0.084 Score=55.13 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 385
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.73 E-value=0.092 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999876
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.68 E-value=0.061 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988763
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.63 E-value=0.068 Score=51.51 Aligned_cols=22 Identities=41% Similarity=0.440 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999888763
No 388
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.62 E-value=0.075 Score=51.47 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 389
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.60 E-value=0.17 Score=49.07 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.9
Q ss_pred EEEEEecCCchHHHHHHHH
Q 036345 201 VISLVGMGGIGKTTLAQFA 219 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v 219 (954)
+..|.|.+|.|||++|...
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 6789999999999999664
No 390
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.59 E-value=0.078 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.56 E-value=0.12 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999976
No 392
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.54 E-value=1.3 Score=59.57 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcC------------CCCcccHHHHHH
Q 036345 202 ISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGS------------ASNLGELQSLLQ 269 (954)
Q Consensus 202 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~ 269 (954)
|.++|++|+|||++|+.+.....- ...+.++.+...+...+...+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~----~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSL----YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSS----CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHhcCCC----CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHHHhcCceeEEEecCCCCCCcc------ChhhHHhhhcCCC------------CCcEEEEecCchh-------HHhhh
Q 036345 270 RIQTSIAGKKFLLVLDDMWTDDYS------KWEPFNNCLMNGL------------RGSKILVTTRKKT-------VAQMM 324 (954)
Q Consensus 270 ~l~~~l~~kr~LlVlDdvw~~~~~------~~~~l~~~l~~~~------------~gs~iiiTtr~~~-------v~~~~ 324 (954)
+++.++++||+.-...+ ..+.++..+..++ .+..+|-++.... -.+..
T Consensus 1335 -------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1335 -------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp -------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred -------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Q ss_pred cCcceEeCCCCCHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhhhhhc
Q 036345 325 ESTDVFSIKELSKQECWSLFKRFAFFGRHPSECEQLEEIGRKIVSRCKGLPLAAKTIGSLLRFKKTREEWQRILDSEMWK 404 (954)
Q Consensus 325 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l~~~~~~ 404 (954)
.-...+.+...+.++-..+|.. +.+..-..+-.+..++..+. ..+.+-|..+...
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~--------------------il~~~l~~~~~v~~~~~~lv-~ati~~y~~v~~~---- 1462 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEI--------------------YYKAIFKLVPEFRSYTEPFA-RASVHLYNECKAR---- 1462 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHH--------------------HHHHHTTSSGGGGGGHHHHH-HHHHHHHHHHHHH----
T ss_pred heeeEEEeCCCCHHHHHHHHHH--------------------HHHHHhccCHHHHHHHHHHH-HHHHHHHHHHHHH----
Q ss_pred ccccccchhhHHHhhhcCCChhhhhHHhHhcCC-CCCcccchHHHHHHHHHhc---ccCCCCCchHHHHHHHHHHHHHhc
Q 036345 405 LKEFEKGLLAPLLLSYNDLPTMVKRCFSYCAVF-PKDYNIEKDELIKVWMAQG---YIGPKENEEMEIIGQEYFDYLATR 480 (954)
Q Consensus 405 ~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~f-p~~~~i~~~~li~~w~a~g---~i~~~~~~~~e~~~~~~~~~L~~~ 480 (954)
..+.-+.-|--=+..+-+.|..+... ++...-+.+.++++|+-|+ |...-.+....+...+.+.+.+..
T Consensus 1463 -------~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~ 1535 (2695)
T 4akg_A 1463 -------YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDK 1535 (2695)
T ss_dssp -------SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHH
T ss_pred -------cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q ss_pred CC
Q 036345 481 SF 482 (954)
Q Consensus 481 ~l 482 (954)
.|
T Consensus 1536 ~f 1537 (2695)
T 4akg_A 1536 YL 1537 (2695)
T ss_dssp HS
T ss_pred Hh
No 393
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.54 E-value=0.094 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999999888764
No 394
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.53 E-value=0.13 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999865
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.48 E-value=0.061 Score=53.14 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 396
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.48 E-value=0.074 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999977
No 397
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.47 E-value=0.077 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999773
No 398
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.47 E-value=0.13 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.++.-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 399
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.44 E-value=0.1 Score=50.17 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=26.1
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+..+..++... +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555421 12346899999999999999888773
No 400
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.37 E-value=0.36 Score=53.81 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=34.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHH
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIE 252 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 252 (954)
..++.|.|.+|+||||||..++.+.... .-..++|++.. .+...+...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHHH
Confidence 3588999999999999998887642211 11256776644 355666666543
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.35 E-value=0.097 Score=51.59 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 402
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.35 E-value=0.19 Score=48.75 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 403
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.12 Score=49.85 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998774
No 404
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.27 E-value=0.09 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 405
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.11 E-value=0.084 Score=51.74 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+++|+|+.|+|||||++.++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999998875
No 406
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.10 E-value=0.34 Score=57.34 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=37.3
Q ss_pred cCCceeechhhhhHHHHHhhccCCC-------CCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 170 NVSEVRGRDEEKNSLKSKLLCESSQ-------QPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.-..+.|.++.+++|.+.+..+... .....+-|.++|++|.|||.+|+++++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 3456788888888877765433110 0123445789999999999999999984
No 407
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.04 E-value=0.15 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.++.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 48999999999999999999763
No 408
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.00 E-value=0.095 Score=51.85 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 409
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.98 E-value=0.11 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 410
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.97 E-value=0.14 Score=50.40 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999763
No 411
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.95 E-value=0.16 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999773
No 412
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.93 E-value=0.1 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999998873
No 413
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.90 E-value=0.16 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999873
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.88 E-value=0.11 Score=55.36 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+++|+|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999988763
No 415
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.85 E-value=0.17 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.81 E-value=0.085 Score=52.48 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 417
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.81 E-value=0.17 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 418
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.81 E-value=0.1 Score=51.64 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 419
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.76 E-value=0.078 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=15.9
Q ss_pred EEEEEEecCCchHHHHHHHHh-c
Q 036345 200 HVISLVGMGGIGKTTLAQFAY-N 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~-~ 221 (954)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 420
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.72 E-value=0.84 Score=45.57 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=16.6
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 036345 200 HVISLVGMGGIGKTTLAQFA 219 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v 219 (954)
+.+.|+|..|+||||++...
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 37899999999999876544
No 421
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.69 E-value=0.11 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 422
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.65 E-value=0.11 Score=54.59 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 423
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.64 E-value=0.17 Score=51.82 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 424
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.64 E-value=0.14 Score=56.09 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=35.3
Q ss_pred CceeechhhhhHHHHHhhcc-------CC-CCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 172 SEVRGRDEEKNSLKSKLLCE-------SS-QQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++|.+..++.+...+... .. ......+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45889888888876655321 00 00112356889999999999999999873
No 425
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.59 E-value=0.09 Score=53.12 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 426
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.58 E-value=0.69 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 427
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.57 E-value=0.35 Score=62.64 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=53.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHHhhcCCC-----CcccHHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEALEGSAS-----NLGELQSLLQRIQ 272 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 272 (954)
..+++.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+.. ...+.+...+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4568999999999999999888763 222334577888887766655 445542211 1123345555555
Q ss_pred HHh-cCceeEEEecCC
Q 036345 273 TSI-AGKKFLLVLDDM 287 (954)
Q Consensus 273 ~~l-~~kr~LlVlDdv 287 (954)
+.. +.+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 444 356679999998
No 428
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.56 E-value=0.14 Score=53.74 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 429
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.40 E-value=0.37 Score=53.05 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=47.5
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCcccccccce-EEEEEeCCCCC-HHHHHHHHHHHhhc-------CCCCcccHHH---
Q 036345 200 HVISLVGMGGIGKTTLA-QFAYNDNDVMNSFEI-RMWVCVSDPFD-EFRVARAIIEALEG-------SASNLGELQS--- 266 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~--- 266 (954)
..++|+|..|+|||+|| ..+.+.. .-+. ++++-+.+... +.++...+...=.. ...+......
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46889999999999995 5777742 2343 46777776532 33444444331100 0111111111
Q ss_pred --HHHHHHHHh--cCceeEEEecCC
Q 036345 267 --LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 267 --~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 112233444 588999999998
No 430
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.39 E-value=0.19 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 431
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.37 E-value=0.16 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..-.|+|+|..|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 432
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.34 E-value=0.12 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 433
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.31 E-value=1.2 Score=51.35 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceEE-------------------------------EEEeCCCCCHH-----
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRM-------------------------------WVCVSDPFDEF----- 244 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-------------------------------wv~~s~~~~~~----- 244 (954)
+++|+|+.|+|||||.+.+.. ........+ .+...+..+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G---ll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG---KQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIK 181 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT---SSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCS
T ss_pred EEEEECCCCChHHHHHHHHhc---CCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhc
Q ss_pred ------------------HHHHHHHHHhhcC------CCCcccHHHHHHHHHHHhcCceeEEEecCCCCC-CccChhhHH
Q 036345 245 ------------------RVARAIIEALEGS------ASNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFN 299 (954)
Q Consensus 245 ------------------~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~ 299 (954)
+...++++.++.. ....+.-+...-.+.+.+-.+.=+++||.--.. |...-..+.
T Consensus 182 ~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~ 261 (608)
T 3j16_B 182 GPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261 (608)
T ss_dssp SSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred chhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHH
Q ss_pred hhhcC-CCCCcEEEEecCchhHHhhhcC
Q 036345 300 NCLMN-GLRGSKILVTTRKKTVAQMMES 326 (954)
Q Consensus 300 ~~l~~-~~~gs~iiiTtr~~~v~~~~~~ 326 (954)
..+.. ...|..||++|.+...+..+..
T Consensus 262 ~~l~~l~~~g~tvi~vtHdl~~~~~~~d 289 (608)
T 3j16_B 262 QIIRSLLAPTKYVICVEHDLSVLDYLSD 289 (608)
T ss_dssp HHHHGGGTTTCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCC
No 434
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.30 E-value=0.16 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 435
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.28 E-value=0.13 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+++|+|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 436
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.27 E-value=0.12 Score=50.64 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 437
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.27 E-value=0.11 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..+++|+|..|+|||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999988763
No 438
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.22 E-value=0.12 Score=49.41 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 439
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.15 E-value=0.23 Score=53.30 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=26.8
Q ss_pred hhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 181 KNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..++.+.+... .....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44445544432 23567999999999999999988765
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.14 E-value=0.13 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 441
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.11 E-value=0.14 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=22.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999887
No 442
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.10 E-value=0.14 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999873
No 443
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.08 E-value=0.35 Score=52.63 Aligned_cols=85 Identities=12% Similarity=0.186 Sum_probs=48.6
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccc----eEEEEEeCCCC-CHHHHHHHHHHH--hhc-----CCCCcccHHH--
Q 036345 201 VISLVGMGGIGKTTLAQFAYNDNDVMNSFE----IRMWVCVSDPF-DEFRVARAIIEA--LEG-----SASNLGELQS-- 266 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~-- 266 (954)
.++|.|..|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++..++.+. +.. ...+......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 4789999999999999999885332 112 45666666543 344455544332 100 0111111111
Q ss_pred ---HHHHHHHHh---cCceeEEEecCC
Q 036345 267 ---LLQRIQTSI---AGKKFLLVLDDM 287 (954)
Q Consensus 267 ---~~~~l~~~l---~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+|+++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 122344554 378999999998
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.04 E-value=0.14 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 445
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.01 E-value=0.32 Score=53.50 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=47.1
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCcccccccce-EEEEEeCCCCC-HHHHHHHHHHHhhcC-------CCCcccHHH---
Q 036345 200 HVISLVGMGGIGKTTLA-QFAYNDNDVMNSFEI-RMWVCVSDPFD-EFRVARAIIEALEGS-------ASNLGELQS--- 266 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~--- 266 (954)
..++|+|..|+|||+|| ..+.+.. .-+. ++++-+.+... +.++...+.+.=... ..+......
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46789999999999995 5777742 2343 46777776543 333444433211000 111111111
Q ss_pred --HHHHHHHHh--cCceeEEEecCC
Q 036345 267 --LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 267 --~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112233444 588999999998
No 446
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.00 E-value=0.14 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999977
No 447
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.00 E-value=0.15 Score=59.25 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=35.7
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899988888887777632 37899999999999999999874
No 448
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.00 E-value=0.14 Score=52.25 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999763
No 449
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.96 E-value=0.14 Score=50.54 Aligned_cols=21 Identities=43% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999977
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.94 E-value=0.14 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 451
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.90 E-value=0.15 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999873
No 452
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.88 E-value=0.14 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|+|||||++.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999873
No 453
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.84 E-value=0.88 Score=50.26 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=34.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCHHHHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDEFRVARAIIEA 253 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 253 (954)
...++.|.|.+|+||||+|..++.+.... -..++|++.. .+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 34588999999999999998877642222 2356666544 4555666665544
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.83 E-value=0.14 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+|.|.|++|+||+|.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 455
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.83 E-value=0.54 Score=50.63 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=32.5
Q ss_pred CceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcC
Q 036345 172 SEVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++|......++...+..... ... .|.|.|.+|+||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~~~-~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---SKA-PVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---SCS-CEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc---cch-hheEEeCCCchHHHHHHHHHHh
Confidence 4577877766666665543321 122 3679999999999999998763
No 456
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.79 E-value=0.17 Score=51.60 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=55.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC-CCCHHHHHHHHHH--HhhcCCCCcccHHHHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD-PFDEFRVARAIIE--ALEGSASNLGELQSLLQRIQTS 274 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 274 (954)
...+++|+|+.|+|||||++.+... ....+...+++.-.. .+-.... ..++. .++. +. ..+...+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 3468999999999999999988763 111112333322110 0000000 00000 0000 01 1234456666
Q ss_pred hcCceeEEEecCCCCCCccChhhHHhhhcCCCCCcEEEEecCchhHHh
Q 036345 275 IAGKKFLLVLDDMWTDDYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQ 322 (954)
Q Consensus 275 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~ 322 (954)
+..++=++++|+.- +.+....+.... ..|.-|++||....+..
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 65566688899984 333333322222 24667888887766443
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.78 E-value=0.14 Score=50.96 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 458
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.71 E-value=0.17 Score=52.17 Aligned_cols=24 Identities=33% Similarity=0.235 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 459
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.62 E-value=0.19 Score=51.37 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCceEEEEEEecCCchHHHHHHHHhc
Q 036345 196 PNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 196 ~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.....++.+.|.||+||||++..+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 34578899999999999999988874
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.51 E-value=0.15 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.144 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 461
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.44 E-value=1.9 Score=46.68 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=32.6
Q ss_pred ceeechhhhhHHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhc
Q 036345 173 EVRGRDEEKNSLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.++|....+.++.+.+..... .... |.|.|..|+|||++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHH
Confidence 466776677777766655432 2333 48999999999999999876
No 462
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.41 E-value=1.7 Score=52.38 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=63.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccc---eEEEEEeCCC-------CCH-----------HHHHHHHHHHhhcCC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVMNSFE---IRMWVCVSDP-------FDE-----------FRVARAIIEALEGSA 258 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~wv~~s~~-------~~~-----------~~~~~~i~~~l~~~~ 258 (954)
.+++|+|+.|+|||||++.+..- .+. .++ ..-.+.+.+. .++ .....++++.++...
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 48999999999999999999732 111 010 0001222221 112 122334455554320
Q ss_pred -------CCcccHHHHHHHHHHHhcCceeEEEecCCCCC-CccChhhHHhhhcCCCCCcEEEEecCchhHHhh
Q 036345 259 -------SNLGELQSLLQRIQTSIAGKKFLLVLDDMWTD-DYSKWEPFNNCLMNGLRGSKILVTTRKKTVAQM 323 (954)
Q Consensus 259 -------~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~~ 323 (954)
...+.-+...-.+.+.+-.++=+++||+--+. |...-..+...+.. .|..||++|.+......
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 01122233334455666677779999987331 22333345555554 46678888887665543
No 463
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.35 E-value=0.28 Score=51.49 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=28.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPF 241 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 241 (954)
...++|+|+|-||+||||+|..++.- ....=..++-|+.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 46789999999999999999776652 22222245666665433
No 464
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.32 E-value=0.19 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999988764
No 465
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.32 E-value=0.48 Score=52.58 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCCCCCH-HHHHHH
Q 036345 183 SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSDPFDE-FRVARA 249 (954)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~ 249 (954)
++++.|..-. .-..++|.|..|+|||+|++.+.+.. +-+.++++-+.+.... .+++..
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4556655332 33468999999999999999987732 2346778888876544 344443
No 466
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.31 E-value=0.18 Score=51.72 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998876
No 467
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.28 E-value=0.17 Score=52.57 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345899999999999999999876
No 468
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.22 E-value=0.16 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999866
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.19 E-value=0.097 Score=54.37 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=18.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 470
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.13 E-value=0.45 Score=46.04 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.|+|=|..|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999998873
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.11 E-value=0.17 Score=55.70 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHhcC
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999998873
No 472
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.10 E-value=0.19 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.09 E-value=0.17 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 474
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.07 E-value=0.22 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 475
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.99 E-value=0.25 Score=47.11 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998875
No 476
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.99 E-value=0.41 Score=54.87 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+++.|.|.+|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999988876
No 477
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.93 E-value=0.3 Score=53.12 Aligned_cols=88 Identities=9% Similarity=0.125 Sum_probs=48.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccc--------cccc-eEEEEEeCCCC-CHHHHHHHHHHH--hhc-----CCCCcc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYNDNDVM--------NSFE-IRMWVCVSDPF-DEFRVARAIIEA--LEG-----SASNLG 262 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~--l~~-----~~~~~~ 262 (954)
..++|.|..|+|||+|+..+++..... ++=+ .++++-+.+.. .+.++...+.+. +.. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 357899999999999999988753331 1111 45666666543 333444443321 000 011111
Q ss_pred cHHH-----HHHHHHHHh---cCceeEEEecCC
Q 036345 263 ELQS-----LLQRIQTSI---AGKKFLLVLDDM 287 (954)
Q Consensus 263 ~~~~-----~~~~l~~~l---~~kr~LlVlDdv 287 (954)
.... ..-.+.+++ +++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 122334454 378999999998
No 478
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.91 E-value=0.22 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999988763
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.90 E-value=0.19 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 480
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.89 E-value=0.22 Score=54.78 Aligned_cols=25 Identities=44% Similarity=0.414 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..++|.|+|.+|+||||++..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 481
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.78 E-value=0.4 Score=57.90 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=19.9
Q ss_pred ceEEEEEEecCCchHHHHHHHH
Q 036345 198 AIHVISLVGMGGIGKTTLAQFA 219 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v 219 (954)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 482
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.54 E-value=0.28 Score=49.46 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=27.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhcCcccccccceEEEEEeCC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYNDNDVMNSFEIRMWVCVSD 239 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 239 (954)
..++.|+|++|+||||||..++.. ....-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 358999999999999999777553 111223567776544
No 483
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.47 E-value=0.33 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.+++|+|+.|.|||||.+.++.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 48999999999999999999873
No 484
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.40 E-value=0.22 Score=51.53 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 036345 200 HVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
.++.|+|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999988765
No 485
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.36 E-value=0.22 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-|+|+|.+|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988653
No 486
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.34 E-value=0.24 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 487
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.33 E-value=0.96 Score=49.64 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=47.3
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCcccccccc-eEEEEEeCCCCC-HHHHHHHHHHHhhcC--------CCCcccHHH--
Q 036345 200 HVISLVGMGGIGKTTLA-QFAYNDNDVMNSFE-IRMWVCVSDPFD-EFRVARAIIEALEGS--------ASNLGELQS-- 266 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~--------~~~~~~~~~-- 266 (954)
..++|.|..|+|||+|| ..+.+.. +-+ .++++-+++... +.++...+.+. +.- ..+......
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~-g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEH-GALANTIVVVATASESAALQYL 237 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHH-SCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhc-CcccceEEEEECCCCChHHHHH
Confidence 45789999999999996 5777631 223 357777877543 34444443332 110 111111111
Q ss_pred ---HHHHHHHHh--cCceeEEEecCC
Q 036345 267 ---LLQRIQTSI--AGKKFLLVLDDM 287 (954)
Q Consensus 267 ---~~~~l~~~l--~~kr~LlVlDdv 287 (954)
..-.+.+++ +++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111223333 589999999998
No 488
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.32 E-value=0.29 Score=46.28 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999998764
No 489
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.29 E-value=0.16 Score=58.53 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 036345 201 VISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-|.++|++|+|||+||+.+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4889999999999999999874
No 490
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.27 E-value=0.2 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHhc
Q 036345 197 NAIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 197 ~~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999876
No 491
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.26 E-value=0.27 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
....|+|+|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456889999999999999998764
No 492
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.24 E-value=0.28 Score=53.65 Aligned_cols=100 Identities=9% Similarity=0.027 Sum_probs=54.1
Q ss_pred HHHHHhhccCCCCCCceEEEEEEecCCchHHHHHHHHhcCcccccc--cceEEEEEeCCCC-CHHHHHHHHHHHhhcC--
Q 036345 183 SLKSKLLCESSQQPNAIHVISLVGMGGIGKTTLAQFAYNDNDVMNS--FEIRMWVCVSDPF-DEFRVARAIIEALEGS-- 257 (954)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-- 257 (954)
+.++.|..-. .-.-++|.|.+|+|||+|+..++++...... =+.++++-+.+.. .+.++...+...=...
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 3455555332 2335778999999999999998875332111 1345666666543 3445555554321100
Q ss_pred -----CCCcccHH-----HHHHHHHHHh---cCceeEEEecCC
Q 036345 258 -----ASNLGELQ-----SLLQRIQTSI---AGKKFLLVLDDM 287 (954)
Q Consensus 258 -----~~~~~~~~-----~~~~~l~~~l---~~kr~LlVlDdv 287 (954)
..+..... ...-.+.+++ +++.+|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11111111 1112233444 479999999997
No 493
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.21 E-value=0.3 Score=45.94 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.--|+|+|.+|+|||||++.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999988764
No 494
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.16 E-value=0.21 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.138 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhc
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...+++|+|+.|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445899999999999999999986
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.07 E-value=0.25 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhc
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~ 221 (954)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999887
No 496
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.07 E-value=0.32 Score=46.04 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHhcC
Q 036345 198 AIHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 198 ~~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
...-|+|+|..|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988764
No 497
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.03 E-value=0.25 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 036345 201 VISLVGMGGIGKTTLAQFAYN 221 (954)
Q Consensus 201 vi~I~G~~GiGKTtLa~~v~~ 221 (954)
+.+|+|+.|.|||||++.++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998854
No 498
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.98 E-value=0.22 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998764
No 499
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.96 E-value=0.29 Score=46.25 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 036345 200 HVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 200 ~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998764
No 500
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.95 E-value=0.28 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhcC
Q 036345 199 IHVISLVGMGGIGKTTLAQFAYND 222 (954)
Q Consensus 199 ~~vi~I~G~~GiGKTtLa~~v~~~ 222 (954)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 445789999999999999998764
Done!