BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036348
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22582|H2B_GOSHI Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3
Length = 147
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 55/88 (62%), Gaps = 18/88 (20%)
Query: 2 ALAEKNPKVGKKSQRKTPLATRK------------------RILNQIYPDIRISSKAMGI 43
A AEK PK GKK ++ A ++L Q++PDI ISSKAMGI
Sbjct: 25 APAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGI 84
Query: 44 MNSFINDIFEKLAWEASRLARYKKKPSI 71
MNSFINDIFEKLA EASRLARY KKP+I
Sbjct: 85 MNSFINDIFEKLAQEASRLARYNKKPTI 112
>sp|O65819|H2B3_SOLLC Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1
Length = 137
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 57/86 (66%), Gaps = 16/86 (18%)
Query: 2 ALAEKNPKVGKK------------SQRKTPLATRK----RILNQIYPDIRISSKAMGIMN 45
A AEK PK GKK + K + T K ++L Q++PDI ISSKAMGIMN
Sbjct: 17 APAEKKPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMN 76
Query: 46 SFINDIFEKLAWEASRLARYKKKPSI 71
SFINDIFEKLA EASRLARY KKP+I
Sbjct: 77 SFINDIFEKLAQEASRLARYNKKPTI 102
>sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3
Length = 148
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 56/88 (63%), Gaps = 18/88 (20%)
Query: 2 ALAEKNPKVGKKSQRKTPLATRK------------------RILNQIYPDIRISSKAMGI 43
A AEK PK GKK ++ A + ++L Q++PDI ISSKAMGI
Sbjct: 26 APAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGI 85
Query: 44 MNSFINDIFEKLAWEASRLARYKKKPSI 71
MNSFINDIFEKLA E+SRLARY KKP+I
Sbjct: 86 MNSFINDIFEKLAQESSRLARYNKKPTI 113
>sp|P40283|H2B11_ARATH Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5
Length = 150
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 17/87 (19%)
Query: 2 ALAEKNPKVGKKSQRKT-------------PLATRK----RILNQIYPDIRISSKAMGIM 44
A AEK PK GKK ++ + T K ++L Q++PDI ISSKAMGIM
Sbjct: 29 APAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIM 88
Query: 45 NSFINDIFEKLAWEASRLARYKKKPSI 71
NSFINDIFEKLA EAS+LARY KKP+I
Sbjct: 89 NSFINDIFEKLAQEASKLARYNKKPTI 115
>sp|Q9SI96|H2B3_ARATH Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3
Length = 151
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 43/47 (91%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAMGIMNSFINDIFEKLA EAS+LARY KKP+I
Sbjct: 70 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTI 116
>sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3
Length = 148
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 55/88 (62%), Gaps = 18/88 (20%)
Query: 2 ALAEKNPKVGKKSQRKTPLATRK------------------RILNQIYPDIRISSKAMGI 43
A AEK PK GKK ++ A + ++L Q++PDI ISSKAMGI
Sbjct: 26 APAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGI 85
Query: 44 MNSFINDIFEKLAWEASRLARYKKKPSI 71
MNSFINDIFEKL E+SRLARY KKP+I
Sbjct: 86 MNSFINDIFEKLTQESSRLARYNKKPTI 113
>sp|P93354|H2B_TOBAC Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3
Length = 146
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 53/87 (60%), Gaps = 17/87 (19%)
Query: 2 ALAEKNPKVGKKSQRKTPLATRK-----------------RILNQIYPDIRISSKAMGIM 44
A AEK P+ GKK R A K R+L ++PDI ISSKAMGIM
Sbjct: 25 APAEKKPRAGKKLPRDAGAAGDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIM 84
Query: 45 NSFINDIFEKLAWEASRLARYKKKPSI 71
NSFINDIFEKLA E+SRLA Y KKP+I
Sbjct: 85 NSFINDIFEKLARESSRLAGYNKKPTI 111
>sp|Q9LQQ4|H2B1_ARATH Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3
Length = 148
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 56/85 (65%), Gaps = 15/85 (17%)
Query: 2 ALAEKNPKVGKKSQRKTP-----------LATRK----RILNQIYPDIRISSKAMGIMNS 46
A AEK PK GKK K + T K ++L Q++PDI ISSKAMGIMNS
Sbjct: 29 APAEKKPKAGKKLPPKEAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNS 88
Query: 47 FINDIFEKLAWEASRLARYKKKPSI 71
FINDIFEKLA E+S+LARY KKP+I
Sbjct: 89 FINDIFEKLAQESSKLARYNKKPTI 113
>sp|Q9LZT0|H2B7_ARATH Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3
Length = 145
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 17/87 (19%)
Query: 2 ALAEKNPKVGKKSQRKT-------------PLATRK----RILNQIYPDIRISSKAMGIM 44
A AEK PK GKK ++ + T K ++L Q++PDI ISSKAMGIM
Sbjct: 24 APAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIM 83
Query: 45 NSFINDIFEKLAWEASRLARYKKKPSI 71
NSFINDIFEKLA E+S+LARY KKP+I
Sbjct: 84 NSFINDIFEKLASESSKLARYNKKPTI 110
>sp|O23629|H2B6_ARATH Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3
Length = 150
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 17/87 (19%)
Query: 2 ALAEKNPKVGKKSQRKT-------------PLATRK----RILNQIYPDIRISSKAMGIM 44
A AEK PK GKK ++ + T K ++L Q++PDI ISSKAMGIM
Sbjct: 29 APAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIM 88
Query: 45 NSFINDIFEKLAWEASRLARYKKKPSI 71
NSFINDIFEKLA E+S+LARY KKP+I
Sbjct: 89 NSFINDIFEKLASESSKLARYNKKPTI 115
>sp|Q1SU99|H2B3_MEDTR Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3
Length = 138
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 43/47 (91%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI +SSKAMGIMNSFINDIFEKLA E+SRLARY KKP+I
Sbjct: 57 KVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI 103
>sp|O49118|H2B_CAPAN Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3
Length = 145
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 56/84 (66%), Gaps = 16/84 (19%)
Query: 4 AEKNPKVGKK------------SQRKTPLATRK----RILNQIYPDIRISSKAMGIMNSF 47
AEK PK GKK + K + T K ++L Q++PDI ISSK+MGIMNSF
Sbjct: 27 AEKKPKAGKKLPKDAGRPDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSF 86
Query: 48 INDIFEKLAWEASRLARYKKKPSI 71
INDIFEKLA E+SRLARY KKP+I
Sbjct: 87 INDIFEKLAQESSRLARYNKKPTI 110
>sp|Q9FFC0|H2B10_ARATH Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3
Length = 145
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 43/47 (91%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAMGIMNSFINDIFEKLA E+S+LARY KKP+I
Sbjct: 64 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTI 110
>sp|Q9LZ45|H2B9_ARATH Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3
Length = 132
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI IS KAMGIMNSFINDIFEKLA E+SRLARY KKP+I
Sbjct: 51 KVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI 97
>sp|Q9LFF6|H2B8_ARATH Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3
Length = 138
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI IS KAMGIMNSFINDIFEKLA E+SRLARY KKP+I
Sbjct: 57 KVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI 103
>sp|Q99285|H2B_PEA Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2
Length = 120
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAMGIMNSFINDIFEKLA EASRLARY KK +I
Sbjct: 38 KVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTI 84
>sp|A3AGM4|H2B1_ORYSJ Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=1 SV=1
Length = 152
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA EA+RLARY KKP+I
Sbjct: 71 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTI 117
>sp|A2XF66|H2B1_ORYSI Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1
Length = 152
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA EA+RLARY KKP+I
Sbjct: 71 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTI 117
>sp|Q9ZUS0|H2B4_ARATH Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3
Length = 138
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PD+ IS KAMGIMNSFINDIFEKLA E+S+LARY KKP+I
Sbjct: 58 KVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTI 104
>sp|Q943L2|H2B11_ORYSJ Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1
Length = 139
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA EA+RLARY KKP+I
Sbjct: 58 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTI 104
>sp|A2WWU2|H2B11_ORYSI Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1
Length = 139
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA EA+RLARY KKP+I
Sbjct: 58 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTI 104
>sp|Q6ZBP3|H2B2_ORYSJ Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1
Length = 150
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA EA++LARY KKP+I
Sbjct: 69 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTI 115
>sp|A2YWI3|H2B2_ORYSI Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1
Length = 150
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA EA++LARY KKP+I
Sbjct: 69 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTI 115
>sp|O65821|H2B1_SOLLC Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4
Length = 142
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 55/83 (66%), Gaps = 15/83 (18%)
Query: 4 AEKNPKVGKK-----------SQRKTPLATRK----RILNQIYPDIRISSKAMGIMNSFI 48
AEK PK GKK + K + T K ++L Q++PDI ISSK+MGIMNSFI
Sbjct: 25 AEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFI 84
Query: 49 NDIFEKLAWEASRLARYKKKPSI 71
NDIFEKLA E+SRLAR KKP+I
Sbjct: 85 NDIFEKLAQESSRLARINKKPTI 107
>sp|P27807|H2B1_WHEAT Histone H2B.1 OS=Triticum aestivum PE=1 SV=3
Length = 152
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA EA++LARY KKP+I
Sbjct: 71 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTI 117
>sp|Q9SF55|H2B5_ARATH Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3
Length = 126
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI IS KAMGIMNSFIND FEK+A E+SRLARY KKP+I
Sbjct: 45 KVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTI 91
>sp|P05621|H2B2_WHEAT Histone H2B.2 OS=Triticum aestivum PE=1 SV=2
Length = 150
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 69 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 115
>sp|O65818|H2B2_SOLLC Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2
Length = 140
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSK+MGIMNSFINDIFEKLA E+SRLAR KKP+I
Sbjct: 59 KVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTI 105
>sp|Q94JJ4|H2B4_ORYSJ Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1
Length = 153
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|A2WKP5|H2B4_ORYSI Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1
Length = 153
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|Q94JJ7|H2B3_ORYSJ Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1
Length = 153
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|A2WKP3|H2B3_ORYSI Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1
Length = 153
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|Q43216|H2B5_WHEAT Histone H2B.5 OS=Triticum aestivum PE=1 SV=3
Length = 136
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 55 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 101
>sp|Q9LGI2|H2B10_ORYSJ Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1
Length = 153
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|A2WKS3|H2B10_ORYSI Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1
Length = 153
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|P30755|H2B1_MAIZE Histone H2B.1 OS=Zea mays PE=2 SV=3
Length = 151
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 70 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTI 116
>sp|Q9LGH8|H2B8_ORYSJ Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1
Length = 153
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|A2WKS5|H2B8_ORYSI Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1
Length = 153
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|Q7GBK0|H2B7_ORYSJ Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1
Length = 153
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|A2WKS8|H2B7_ORYSI Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1
Length = 153
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|A2WKT1|H2B6_ORYSI Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1
Length = 153
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 118
>sp|Q43261|H2B3_MAIZE Histone H2B.3 OS=Zea mays PE=3 SV=3
Length = 153
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP++
Sbjct: 72 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTV 118
>sp|Q43217|H2B3_WHEAT Histone H2B.3 OS=Triticum aestivum PE=1 SV=3
Length = 138
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM IMNSFINDIFEKLA E+++LARY KKP+I
Sbjct: 57 KVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTI 103
>sp|P54345|H2B2_CHLRE Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3
Length = 156
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PD ISSKAM IMNSFINDIFEK+A EAS+L+RY KKP++
Sbjct: 75 KVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTV 121
>sp|P50565|H2B1_CHLRE Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3
Length = 153
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PD ISSKAM IMNSFINDIFEK+A EAS+L+RY KKP++
Sbjct: 72 KVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTV 118
>sp|P16868|H2B4_VOLCA Histone H2B.4 OS=Volvox carteri PE=3 SV=3
Length = 155
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PD ISSKAM IMNSFINDIFEK+A EAS+L+RY KKP++
Sbjct: 74 KVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTV 120
>sp|P16867|H2B3_VOLCA Histone H2B.3 OS=Volvox carteri PE=3 SV=3
Length = 157
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PD ISSKAM IMNSFINDIFEK+A EAS+L+RY KKP++
Sbjct: 76 KVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTV 122
>sp|Q43215|H2B4_WHEAT Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3
Length = 135
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PDI ISSKAM I NSFINDIFEKLA E+++LARY KKP+I
Sbjct: 54 KVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTI 100
>sp|P54346|H2B3_CHLRE Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3
Length = 153
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PD ISSKAM IMNSFINDIFEK+A EAS+L+RY KKP++
Sbjct: 72 KVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTV 118
>sp|P54347|H2B4_CHLRE Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3
Length = 153
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71
++L Q++PD ISSKAM IMNSFINDIFEK+A EAS+L+RY KKP++
Sbjct: 72 KVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTV 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,656,499
Number of Sequences: 539616
Number of extensions: 664419
Number of successful extensions: 2350
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2122
Number of HSP's gapped (non-prelim): 213
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)