Query 036348
Match_columns 72
No_of_seqs 103 out of 294
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 20:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_B Histone H2B; histone-fo 100.0 1.6E-32 5.5E-37 186.2 6.1 58 15-72 33-91 (126)
2 2nqb_D Histone H2B; nucleosome 100.0 2.8E-32 9.4E-37 184.5 6.3 58 15-72 30-88 (123)
3 2jss_A Chimera of histone H2B. 99.9 7.9E-24 2.7E-28 148.6 7.7 56 17-72 2-58 (192)
4 3b0c_W CENP-W, centromere prot 99.4 9E-13 3.1E-17 80.5 6.0 53 20-72 7-59 (76)
5 1b67_A Protein (histone HMFA); 98.3 1.4E-06 4.9E-11 51.2 6.0 52 20-72 5-56 (68)
6 1f1e_A Histone fold protein; a 97.3 0.00032 1.1E-08 48.1 5.1 51 21-72 86-136 (154)
7 1n1j_A NF-YB; histone-like PAI 96.6 0.0089 3E-07 36.8 6.8 54 19-72 10-64 (93)
8 1ku5_A HPHA, archaeal histon; 96.6 0.0073 2.5E-07 35.4 5.9 52 20-72 9-60 (70)
9 1jfi_B DR1 protein, transcript 96.6 0.0098 3.4E-07 41.7 7.4 54 19-72 17-70 (179)
10 2yfw_B Histone H4, H4; cell cy 96.6 0.0034 1.2E-07 39.8 4.6 48 24-72 36-83 (103)
11 1tzy_D Histone H4-VI; histone- 96.5 0.004 1.4E-07 39.4 4.6 51 21-72 33-83 (103)
12 2hue_C Histone H4; mini beta s 96.5 0.0044 1.5E-07 38.0 4.6 53 19-72 12-64 (84)
13 1id3_B Histone H4; nucleosome 96.5 0.0065 2.2E-07 38.7 5.5 51 21-72 32-82 (102)
14 1h3o_B Transcription initiatio 96.4 0.0092 3.1E-07 36.8 5.5 47 25-71 13-59 (76)
15 2byk_B Chrac-14; nucleosome sl 96.2 0.014 4.7E-07 38.5 6.1 50 23-72 15-65 (128)
16 3b0c_T CENP-T, centromere prot 96.1 0.01 3.6E-07 38.3 5.0 47 25-72 15-61 (111)
17 1f1e_A Histone fold protein; a 96.1 0.016 5.3E-07 39.7 6.0 53 20-72 7-59 (154)
18 3v9r_A MHF1, uncharacterized p 95.7 0.037 1.3E-06 34.9 6.3 48 25-72 20-69 (90)
19 1taf_B TFIID TBP associated fa 95.7 0.075 2.5E-06 32.1 7.3 53 19-72 8-60 (70)
20 3b0b_B CENP-S, centromere prot 95.1 0.033 1.1E-06 36.1 4.5 48 25-72 27-76 (107)
21 4dra_A Centromere protein S; D 95.0 0.043 1.5E-06 36.1 4.9 48 25-72 35-84 (113)
22 1n1j_B NF-YC; histone-like PAI 94.8 0.07 2.4E-06 33.2 5.2 48 24-72 26-74 (97)
23 3vh5_A CENP-S; histone fold, c 94.1 0.065 2.2E-06 36.5 4.3 48 25-72 27-76 (140)
24 1jfi_A Transcription regulator 93.2 0.37 1.3E-05 30.0 6.4 54 18-72 12-66 (98)
25 2ly8_A Budding yeast chaperone 93.1 0.13 4.4E-06 34.1 4.3 38 35-72 64-101 (121)
26 4g92_C HAPE; transcription fac 92.5 0.24 8.1E-06 32.0 4.9 53 19-72 43-96 (119)
27 3ksy_A SOS-1, SON of sevenless 92.3 0.2 6.8E-06 41.6 5.3 37 21-57 25-61 (1049)
28 2f8n_G Core histone macro-H2A. 91.6 0.38 1.3E-05 31.3 5.1 54 19-72 24-77 (120)
29 1taf_A TFIID TBP associated fa 90.2 0.55 1.9E-05 28.0 4.5 47 25-72 9-55 (68)
30 2l5a_A Histone H3-like centrom 89.9 0.58 2E-05 34.1 5.2 38 35-72 178-215 (235)
31 1tzy_A Histone H2A-IV; histone 88.6 1.3 4.4E-05 29.1 5.8 54 19-72 27-80 (129)
32 2nqb_C Histone H2A; nucleosome 87.7 1.1 3.7E-05 29.3 4.9 54 19-72 25-78 (123)
33 1f66_C Histone H2A.Z; nucleoso 87.3 1.7 5.7E-05 28.6 5.7 54 19-72 29-83 (128)
34 1id3_C Histone H2A.1; nucleoso 86.1 2.7 9.3E-05 27.6 6.3 54 19-72 27-80 (131)
35 3nqj_A Histone H3-like centrom 84.4 4.7 0.00016 24.8 6.4 51 22-72 8-64 (82)
36 2f8n_K Histone H2A type 1; nuc 84.2 1.7 5.7E-05 29.5 4.6 54 19-72 46-99 (149)
37 2byk_A Chrac-16; nucleosome sl 83.6 1.7 5.9E-05 28.9 4.4 47 25-72 27-75 (140)
38 2hue_B Histone H3; mini beta s 83.2 4.8 0.00017 24.4 6.0 51 22-72 8-62 (77)
39 2jss_A Chimera of histone H2B. 79.3 4.5 0.00015 27.7 5.5 54 19-72 107-161 (192)
40 3nqu_A Histone H3-like centrom 74.4 7.1 0.00024 26.3 5.2 51 22-72 66-122 (140)
41 1tzy_C Histone H3; histone-fol 74.2 7.9 0.00027 25.8 5.4 50 23-72 68-121 (136)
42 2guz_A Mitochondrial import in 74.1 5.4 0.00019 22.7 4.0 19 21-39 34-52 (71)
43 2ctp_A DNAJ homolog subfamily 73.1 7.3 0.00025 22.1 4.4 39 22-61 27-65 (78)
44 3r45_A Histone H3-like centrom 73.0 6.8 0.00023 26.9 4.9 51 22-72 82-138 (156)
45 2dn9_A DNAJ homolog subfamily 72.5 6.6 0.00023 22.3 4.2 40 22-62 27-67 (79)
46 1faf_A Large T antigen; J doma 72.2 8.2 0.00028 22.5 4.6 37 22-62 33-69 (79)
47 2ctr_A DNAJ homolog subfamily 70.9 8.5 0.00029 22.5 4.5 38 22-60 27-64 (88)
48 2cug_A Mkiaa0962 protein; DNAJ 70.1 9.6 0.00033 22.2 4.6 39 22-61 37-75 (88)
49 2yfv_A Histone H3-like centrom 68.0 12 0.0004 23.7 4.9 51 22-72 32-89 (100)
50 1hdj_A Human HSP40, HDJ-1; mol 65.9 8 0.00027 21.9 3.5 37 22-59 23-59 (77)
51 2ys8_A RAB-related GTP-binding 65.9 13 0.00043 22.0 4.6 19 22-40 47-65 (90)
52 2dmx_A DNAJ homolog subfamily 62.7 20 0.00068 20.9 5.0 40 21-61 28-69 (92)
53 2guz_B Mitochondrial import in 61.9 14 0.00047 21.4 4.1 34 21-58 26-59 (65)
54 2yua_A Williams-beuren syndrom 58.1 12 0.0004 22.4 3.4 39 22-61 37-76 (99)
55 3mn5_S Protein spire, actin, a 54.5 2.1 7E-05 23.4 -0.4 19 15-33 16-36 (38)
56 2ctq_A DNAJ homolog subfamily 53.7 19 0.00066 21.9 4.0 39 22-61 40-79 (112)
57 2ctw_A DNAJ homolog subfamily 53.6 23 0.0008 21.5 4.3 37 22-59 37-74 (109)
58 1iur_A KIAA0730 protein; DNAJ 51.9 31 0.001 20.6 4.6 39 22-61 36-76 (88)
59 2ej7_A HCG3 gene; HCG3 protein 51.3 16 0.00056 20.7 3.2 36 22-58 29-66 (82)
60 2och_A Hypothetical protein DN 51.3 25 0.00086 19.5 3.9 36 21-59 27-62 (73)
61 2lgw_A DNAJ homolog subfamily 51.0 38 0.0013 20.3 5.0 40 21-61 21-62 (99)
62 3b0b_C CENP-X, centromere prot 50.4 32 0.0011 20.8 4.5 38 22-59 13-56 (81)
63 2qsa_A DNAJ homolog DNJ-2; J-d 47.7 35 0.0012 20.4 4.4 39 22-61 36-78 (109)
64 2lhj_A High mobility group pro 41.9 46 0.0016 19.5 4.3 17 19-35 29-49 (97)
65 1gh6_A Large T antigen; tumor 40.0 22 0.00075 22.3 2.7 37 21-61 29-65 (114)
66 2o37_A Protein SIS1; HSP40, J- 38.8 47 0.0016 19.3 3.9 35 22-59 28-62 (92)
67 2rp5_A Putative uncharacterize 37.5 3.6 0.00012 27.8 -1.4 17 49-65 102-118 (136)
68 2pf4_E Small T antigen; PP2A, 36.8 28 0.00096 23.6 3.0 38 21-62 32-69 (174)
69 1wi3_A DNA-binding protein SAT 36.7 52 0.0018 19.9 3.9 27 32-58 10-44 (71)
70 4dra_E Centromere protein X; D 36.2 69 0.0024 19.6 4.5 42 19-60 14-61 (84)
71 3apq_A DNAJ homolog subfamily 35.0 36 0.0012 21.7 3.2 40 21-61 21-61 (210)
72 1dp7_P MHC class II transcript 30.1 25 0.00086 21.0 1.6 17 19-35 39-55 (76)
73 1i1q_B Anthranilate synthase c 27.7 39 0.0013 21.7 2.4 21 29-49 167-187 (192)
74 2l6l_A DNAJ homolog subfamily 24.2 84 0.0029 19.8 3.5 16 22-37 30-45 (155)
75 1z8u_A Alpha-hemoglobin stabil 23.8 28 0.00096 22.4 1.1 17 28-44 24-40 (102)
76 1wl8_A GMP synthase [glutamine 23.6 44 0.0015 21.2 2.0 22 28-49 163-184 (189)
77 2doq_D SFI1P; centrin, CDC31P, 23.5 21 0.00071 22.7 0.4 30 25-57 58-87 (94)
78 1bq0_A DNAJ, HSP40; chaperone, 22.0 46 0.0016 19.7 1.8 16 22-37 23-38 (103)
79 4gud_A Imidazole glycerol phos 21.8 37 0.0013 21.8 1.4 20 29-49 183-202 (211)
80 2oar_A Large-conductance mecha 21.7 44 0.0015 23.2 1.8 18 40-57 50-67 (174)
81 1gpw_B Amidotransferase HISH; 21.6 38 0.0013 21.7 1.4 20 29-49 176-195 (201)
82 1qdl_B Protein (anthranilate s 21.0 53 0.0018 21.1 2.0 22 28-49 172-193 (195)
83 2o97_B NS1, HU-1, DNA-binding 20.2 1.1E+02 0.0039 17.6 3.2 30 27-56 7-37 (90)
No 1
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.97 E-value=1.6e-32 Score=186.23 Aligned_cols=58 Identities=57% Similarity=0.842 Sum_probs=54.8
Q ss_pred ccCCchHHHH-HHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 15 QRKTPLATRK-RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 15 ~~k~~~~tY~-kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+++.+|.+|. |||||||||+|||++||+||||||||||||||.||++|++||+|+||+
T Consensus 33 ~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~Tit 91 (126)
T 1tzy_B 33 SRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTIT 91 (126)
T ss_dssp -CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3556999998 999999999999999999999999999999999999999999999996
No 2
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.97 E-value=2.8e-32 Score=184.47 Aligned_cols=58 Identities=57% Similarity=0.805 Sum_probs=55.3
Q ss_pred ccCCchHHHH-HHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 15 QRKTPLATRK-RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 15 ~~k~~~~tY~-kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+++.+|..|. |||||||||+|||++||+||||||||||||||.||++|++||+|+||+
T Consensus 30 ~~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~Tit 88 (123)
T 2nqb_D 30 KRKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTIT 88 (123)
T ss_dssp CCCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred cccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 4557999998 999999999999999999999999999999999999999999999996
No 3
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.90 E-value=7.9e-24 Score=148.61 Aligned_cols=56 Identities=50% Similarity=0.752 Sum_probs=54.1
Q ss_pred CCchHHHH-HHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 17 KTPLATRK-RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 17 k~~~~tY~-kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+.+|..|. |||||||||+|||++||++|||||+|+|||||.||++|++|++|+|||
T Consensus 2 ~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit 58 (192)
T 2jss_A 2 KETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTIS 58 (192)
T ss_dssp CSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred cchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 46899998 999999999999999999999999999999999999999999999986
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.37 E-value=9e-13 Score=80.53 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=49.7
Q ss_pred hHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 20 LATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 20 ~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.++-.|++||+||+.+||++|+.+|+.++.++++.||.||+.+|++++|.||+
T Consensus 7 ~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~ 59 (76)
T 3b0c_W 7 RGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIK 59 (76)
T ss_dssp HHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred ccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 34555999999999999999999999999999999999999999999999985
No 5
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.33 E-value=1.4e-06 Score=51.20 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=48.4
Q ss_pred hHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 20 LATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 20 ~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.....|++|++ ++..||+.|+..|..++.+.++.|+.||...+.+.+|.||+
T Consensus 5 ~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~ 56 (68)
T 1b67_A 5 IAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIK 56 (68)
T ss_dssp HHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred ccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 45566999999 89999999999999999999999999999999999999985
No 6
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.34 E-value=0.00032 Score=48.14 Aligned_cols=51 Identities=29% Similarity=0.320 Sum_probs=46.8
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 21 ATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
..-.|++|+. ....||+.|...|..++.++.+.|+.||..++++.+|.||+
T Consensus 86 a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt 136 (154)
T 1f1e_A 86 ATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQ 136 (154)
T ss_dssp HHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 3444999998 77899999999999999999999999999999999999985
No 7
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.64 E-value=0.0089 Score=36.80 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=48.3
Q ss_pred chHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPD-IRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~-~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+.+...|+.|..-|+ ..||+.|...+.-........|+.||...+...+|.||.
T Consensus 10 P~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~ 64 (93)
T 1n1j_A 10 PIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 64 (93)
T ss_dssp CHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred ChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 445566999999775 789999999999999999999999999999999999985
No 8
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.60 E-value=0.0073 Score=35.44 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=46.2
Q ss_pred hHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 20 LATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 20 ~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.....|++|.. ....||+.+..-+..++.+..+.|+.+|...+.+.+|.||+
T Consensus 9 ~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~ 60 (70)
T 1ku5_A 9 IAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVK 60 (70)
T ss_dssp HHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEC
T ss_pred hHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 34455889986 46789999999999999999999999999999999999985
No 9
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.57 E-value=0.0098 Score=41.70 Aligned_cols=54 Identities=17% Similarity=0.391 Sum_probs=49.4
Q ss_pred chHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+.++-.|++|.+-|+..||..|...|...+...-.-|+.||..+|...+|.||+
T Consensus 17 P~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~ 70 (179)
T 1jfi_B 17 PRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 70 (179)
T ss_dssp CHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 345556999999999999999999999999999999999999999999999985
No 10
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.56 E-value=0.0034 Score=39.84 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=44.4
Q ss_pred HHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 24 KRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 24 ~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.++++..-. ..||..|..-+..++...++.|+.||...+++.+|.||+
T Consensus 36 ~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt 83 (103)
T 2yfw_B 36 RRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVT 83 (103)
T ss_dssp HHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 388888876 589999999999999999999999999999999999985
No 11
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.50 E-value=0.004 Score=39.43 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=45.6
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 21 ATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
..-.++++..-. ..||..|..-+...+...++.|+.||...+++.+|.||+
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt 83 (103)
T 1tzy_D 33 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVT 83 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 333489998876 589999999999999999999999999999999999985
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.48 E-value=0.0044 Score=37.95 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=45.6
Q ss_pred chHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+.++-.++.+..-+ ..||..+..-+...+...++.|+.||..++++.+|.||+
T Consensus 12 p~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt 64 (84)
T 2hue_C 12 TKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVT 64 (84)
T ss_dssp CHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 33444578887644 679999999999999999999999999999999999985
No 13
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.47 E-value=0.0065 Score=38.71 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 21 ATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
++-.++.+..-+ ..||..+...+..++.+.++.|+.||..++++.+|.||+
T Consensus 32 ~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt 82 (102)
T 1id3_B 32 PAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVT 82 (102)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 344488888643 679999999999999999999999999999999999985
No 14
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.36 E-value=0.0092 Score=36.81 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=43.7
Q ss_pred HHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 036348 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSI 71 (72)
Q Consensus 25 kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl 71 (72)
..++||-|...|...+.+.+-.+.+|.-+.+++.|++||++.+..||
T Consensus 13 ~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~l 59 (76)
T 1h3o_B 13 DLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTL 59 (76)
T ss_dssp HHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 78999999999999999999888888889999999999999998876
No 15
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.22 E-value=0.014 Score=38.48 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=45.4
Q ss_pred HHHHHhhhcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 23 RKRILNQIYPD-IRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 23 Y~kVLKqVhp~-~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
-.|++|++-|+ ..||..|...|.-...-.-.-|+.||..++...+|.||+
T Consensus 15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~ 65 (128)
T 2byk_B 15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTIT 65 (128)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 34899988885 789999999999999999999999999999999999985
No 16
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.10 E-value=0.01 Score=38.25 Aligned_cols=47 Identities=9% Similarity=0.239 Sum_probs=42.7
Q ss_pred HHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 25 kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
|+.+.- ....||..+...+..++.+.++.|+.+|.-++++.+|.||+
T Consensus 15 Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~ 61 (111)
T 3b0c_T 15 QIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVE 61 (111)
T ss_dssp HHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 655554 67899999999999999999999999999999999999985
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.08 E-value=0.016 Score=39.70 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=48.6
Q ss_pred hHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 20 LATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 20 ~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.+.-.|++|+.-|+..||..|-.-+...+..+-+-|+.+|..++...+|.||+
T Consensus 7 ~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~ 59 (154)
T 1f1e_A 7 KAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLM 59 (154)
T ss_dssp HHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEC
T ss_pred ccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 44555899998899999999999999999999999999999999999999985
No 18
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.037 Score=34.94 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=42.4
Q ss_pred HHHhhhcC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 25 RILNQIYP--DIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 25 kVLKqVhp--~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
++..++-+ +..+|..++.-+--++-+.++.||.++..+|++-+|.||.
T Consensus 20 ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~ 69 (90)
T 3v9r_A 20 ERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVN 69 (90)
T ss_dssp HHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 66666644 3679999999999999999999999999999999999984
No 19
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.69 E-value=0.075 Score=32.12 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=44.6
Q ss_pred chHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+.++-.++.+++-- ..+|..+-..+-.-|......|+.||.+++++.+|.||+
T Consensus 8 p~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt 60 (70)
T 1taf_B 8 SAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLS 60 (70)
T ss_dssp CHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec
Confidence 44555577777643 378999999999999999999999999999999999986
No 20
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=95.06 E-value=0.033 Score=36.13 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=42.8
Q ss_pred HHHhhhcC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 25 RILNQIYP--DIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 25 kVLKqVhp--~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
|+++.+-. +..+|.+++..|.-|+.+.++.|+.+|..++++-+|.||.
T Consensus 27 rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~ 76 (107)
T 3b0b_B 27 CLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTIT 76 (107)
T ss_dssp HHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCC
Confidence 77776633 5689999999999999999999999999999999999974
No 21
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=95.00 E-value=0.043 Score=36.15 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=43.1
Q ss_pred HHHhhhcC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 25 RILNQIYP--DIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 25 kVLKqVhp--~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
|+++++-. +..+|..++..|--++.+.++.||.++..+|+.-+|.||.
T Consensus 35 rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~ 84 (113)
T 4dra_A 35 CLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTIN 84 (113)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 77776643 5789999999999999999999999999999999999984
No 22
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=94.76 E-value=0.07 Score=33.20 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHhhhcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 24 KRILNQIYPDI-RISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 24 ~kVLKqVhp~~-gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.|++|.- |+. .||..|--.+.-...-.-+.|+.+|...++.++|.||+
T Consensus 26 krImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~ 74 (97)
T 1n1j_B 26 KKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQ 74 (97)
T ss_dssp HHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 3788875 775 59999999988888888899999999999999999985
No 23
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=94.11 E-value=0.065 Score=36.51 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=42.3
Q ss_pred HHHhhhc--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 25 RILNQIY--PDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 25 kVLKqVh--p~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
++.+++- .++.+|..++..|--++.+.++.||.++..+|++-+|.||.
T Consensus 27 kIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~ 76 (140)
T 3vh5_A 27 ALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTIT 76 (140)
T ss_dssp HHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 5555552 35789999999999999999999999999999999999984
No 24
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.24 E-value=0.37 Score=29.99 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=40.8
Q ss_pred CchHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 18 TPLATRKRILNQIYPD-IRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 18 ~~~~tY~kVLKqVhp~-~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
-+..--.|++|. -|+ ..||..|--.+.-...-.-+.|+.+|...++.++|.||+
T Consensus 12 fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~ 66 (98)
T 1jfi_A 12 FPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMT 66 (98)
T ss_dssp CCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred CChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec
Confidence 344444588886 566 579999988888888777888999999999999999985
No 25
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.13 Score=34.08 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 35 RISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 35 gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.||..+..-+...+.+..|.|+.+|..++.+.+|.|++
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVt 101 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVT 101 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 49999999999999999999999999999999999986
No 26
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=92.53 E-value=0.24 Score=31.95 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=43.6
Q ss_pred chHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPD-IRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~-~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+.+--.|++|.. |+ ..||+.|.-++.-...-.-..|+.+|...|+-++|.||+
T Consensus 43 PvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~ 96 (119)
T 4g92_C 43 PLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQ 96 (119)
T ss_dssp CHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccC
Confidence 455555999876 66 578999988888777777789999999999999999985
No 27
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=92.30 E-value=0.2 Score=41.59 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 036348 21 ATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAW 57 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~ 57 (72)
..+.|||.||||+++|...|..-+++++--+.-.||.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (1049)
T 3ksy_A 25 PALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQ 61 (1049)
T ss_dssp HHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhc
Confidence 4566999999999999999999999999888888875
No 28
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=91.58 E-value=0.38 Score=31.32 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=44.8
Q ss_pred chHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+..-..|.||....---||..|--.|-..+..+.+.|...|...++.+++.+|+
T Consensus 24 PV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rIt 77 (120)
T 2f8n_G 24 PVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVT 77 (120)
T ss_dssp CHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred ChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEc
Confidence 344444999988655689999999899999999999999999999999998875
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.17 E-value=0.55 Score=28.02 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=38.8
Q ss_pred HHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 25 kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
++||.--- ...|..+...|--|+...=+.|+.||..++.+.+|.||.
T Consensus 9 ~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~ 55 (68)
T 1taf_A 9 SILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTID 55 (68)
T ss_dssp HHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 45555221 256889999999999999999999999999999999984
No 30
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=89.88 E-value=0.58 Score=34.12 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=36.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 35 RISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 35 gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
-||..+..-+...+.+..|.|+.+|..++.+.+|.|++
T Consensus 178 RIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVt 215 (235)
T 2l5a_A 178 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVT 215 (235)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 59999999999999999999999999999999999986
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=88.62 E-value=1.3 Score=29.15 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=44.1
Q ss_pred chHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+..-..|.|+...----||+.|--.|-..+..+.+.|...|...++.+++.+|+
T Consensus 27 PV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 27 PVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp CHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 333334999986434489999999999999999999999999999999998875
No 32
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=87.69 E-value=1.1 Score=29.26 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=44.2
Q ss_pred chHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+..-..|.||+-.----||+.|--.|-..+..+.+.|...|...++.+++.+|+
T Consensus 25 PV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 78 (123)
T 2nqb_C 25 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 78 (123)
T ss_dssp CHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 334444999997434489999999999999999999999999999999998875
No 33
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=87.26 E-value=1.7 Score=28.58 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=42.8
Q ss_pred chHHHHHHHhhhcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYP-DIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp-~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+..-..|.||.... .--||+.|--.|-..+..+...|.+.|...++.+++.+|+
T Consensus 29 PV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 83 (128)
T 1f66_C 29 PVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRIT 83 (128)
T ss_dssp CHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEC
T ss_pred ChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 33334499998753 3479999999888888888888888899999999998875
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=86.08 E-value=2.7 Score=27.63 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=44.1
Q ss_pred chHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+..-..|.||.-.----||..|--.|-..+..+.+.|...|...++.+++.+|+
T Consensus 27 PV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (131)
T 1id3_C 27 PVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRII 80 (131)
T ss_dssp CHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEc
Confidence 444445999986333489999999999999999999999999999999998875
No 35
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=84.42 E-value=4.7 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHHHHhhhc------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 22 TRKRILNQIY------PDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 22 tY~kVLKqVh------p~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.|.|+.+++- .+..+++.|+..+.--..+..-.+.++|..++.+.+|.||.
T Consensus 8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~ 64 (82)
T 3nqj_A 8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 64 (82)
T ss_dssp HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 3456666654 46789999999998888888888888999999999999983
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=84.15 E-value=1.7 Score=29.49 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=43.9
Q ss_pred chHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+..-..|.||.-.----||..|--.|-..+..+.+.|.+.|...++.+++.+|+
T Consensus 46 PVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrIt 99 (149)
T 2f8n_K 46 PVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 99 (149)
T ss_dssp CHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 333334999987444489999999999999999999999999999999998875
No 37
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=83.62 E-value=1.7 Score=28.85 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=37.1
Q ss_pred HHHhhhcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCC
Q 036348 25 RILNQIYPDI-RISSKAMGIMNSFINDIFEKLAWEASRLA-RYKKKPSIH 72 (72)
Q Consensus 25 kVLKqVhp~~-gISskam~imnSfvnDiFerIA~EAs~L~-~~nkr~Tl~ 72 (72)
|++|.- |+. .||..|.-+|.-...-.-+.|+.+|...+ +-++|.||+
T Consensus 27 rIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~ 75 (140)
T 2byk_A 27 TIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALK 75 (140)
T ss_dssp --CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEEC
T ss_pred HHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 777765 885 58988888887777666688999999999 999999985
No 38
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=83.24 E-value=4.8 Score=24.42 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=42.1
Q ss_pred HHHHHHhhh----cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 22 TRKRILNQI----YPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 22 tY~kVLKqV----hp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.|.|+++++ .++.-+++.|+..+.--..+..-.+..++..++.+.+|.||.
T Consensus 8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~ 62 (77)
T 2hue_B 8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62 (77)
T ss_dssp HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 445666666 457899999999998888888888888999999999999973
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=79.34 E-value=4.5 Score=27.70 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=43.7
Q ss_pred chHHHHHHHhhhcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 19 PLATRKRILNQIYP-DIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 19 ~~~tY~kVLKqVhp-~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
+..-..|.||...- ..-||..|---|-..+..+.+.|...|...++.+++.+|+
T Consensus 107 Pv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~ 161 (192)
T 2jss_A 107 PVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRIT 161 (192)
T ss_dssp CHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 44444599998633 3569999999888888888888999999999999999985
No 40
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=74.41 E-value=7.1 Score=26.28 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHhhhc------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 22 TRKRILNQIY------PDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 22 tY~kVLKqVh------p~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
-|.++++++- .+.-+++.|+..+.--..+..-.|.++|..+|.+.+|.||.
T Consensus 66 PF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm 122 (140)
T 3nqu_A 66 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122 (140)
T ss_dssp HHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 3446666665 36789999999888777777777777999999999999973
No 41
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=74.24 E-value=7.9 Score=25.79 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=41.5
Q ss_pred HHHHHhhh----cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 23 RKRILNQI----YPDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 23 Y~kVLKqV----hp~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
|.++++++ .+|.-+++.|+..+.--..+..-.|.+++..++.+.+|.||.
T Consensus 68 F~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~ 121 (136)
T 1tzy_C 68 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 121 (136)
T ss_dssp HHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 33666666 468999999999998888888888888999999999999973
No 42
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=74.10 E-value=5.4 Score=22.70 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.0
Q ss_pred HHHHHHHhhhcCCCCCcHH
Q 036348 21 ATRKRILNQIYPDIRISSK 39 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISsk 39 (72)
..|.+..++.|||.|=|..
T Consensus 34 ~ayr~l~~~~HPDk~g~~~ 52 (71)
T 2guz_A 34 EVHRKIMLANHPDKGGSPF 52 (71)
T ss_dssp HHHHHHHHHHCGGGTCCHH
T ss_pred HHHHHHHHHHCCCCCCCHH
Confidence 3677999999999976654
No 43
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.06 E-value=7.3 Score=22.10 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 22 tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~ 61 (72)
.|.+..++.|||..-...+...+ .-|+.-|+-|..+..+
T Consensus 27 ayr~l~~~~HPDk~~~~~~~~~f-~~i~~Ay~~L~d~~~R 65 (78)
T 2ctp_A 27 AYRRLALKFHPDKNHAPGATEAF-KAIGTAYAVLSNPEKR 65 (78)
T ss_dssp HHHHHHTTSCTTTCSSHHHHHHH-HHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHCcCCCCCccHHHHH-HHHHHHHHHHCCHHHH
Confidence 56789999999987665554433 2345666655554433
No 44
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=73.00 E-value=6.8 Score=26.91 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHhhhc------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 22 TRKRILNQIY------PDIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 22 tY~kVLKqVh------p~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
-|.++++++- .+.-+++.|+..+.--..+..-.|.++|..+|.+.+|.||.
T Consensus 82 PF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm 138 (156)
T 3r45_A 82 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 138 (156)
T ss_dssp HHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEC
T ss_pred cHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 4447777765 35679999999888777777777777999999999999973
No 45
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.52 E-value=6.6 Score=22.28 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHhhhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRIS-SKAMGIMNSFINDIFEKLAWEASRL 62 (72)
Q Consensus 22 tY~kVLKqVhp~~gIS-skam~imnSfvnDiFerIA~EAs~L 62 (72)
.|.+..++.|||..-+ ..+...+ ..|+.-|+-|..+..+-
T Consensus 27 ayr~l~~~~HPD~~~~~~~a~~~f-~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 27 AYYQLAKKYHPDTNKDDPKAKEKF-SQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp HHHHHHHHTCTTTCSSCTTHHHHH-HHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHCcCCCCCCHHHHHHH-HHHHHHHHHHCCHHHHH
Confidence 5668999999997653 3343333 34677777776665543
No 46
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=72.22 E-value=8.2 Score=22.48 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRL 62 (72)
Q Consensus 22 tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L 62 (72)
.|.+..++.|||.+-+...+. -||.-||-|.....+.
T Consensus 33 aYr~la~~~HPDk~~~~~~f~----~i~~AYe~L~~~~~r~ 69 (79)
T 1faf_A 33 AYKQQSLLLHPDKGGSHALMQ----ELNSLWGTFKTEVYNL 69 (79)
T ss_dssp HHHHHHHHSSGGGSCCHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCCHHHHH----HHHHHHHHHhhHHHHH
Confidence 677999999999876654433 3566677666655443
No 47
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.93 E-value=8.5 Score=22.47 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEAS 60 (72)
Q Consensus 22 tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs 60 (72)
.|.+..++.|||..-+..+...+. -|+.-|+-|..+..
T Consensus 27 ayr~l~~~~HPDk~~~~~a~~~f~-~i~~Ay~~L~d~~~ 64 (88)
T 2ctr_A 27 AFHKLAMKYHPDKNKSPDAEAKFR-EIAEAYETLSDANR 64 (88)
T ss_dssp HHHHHHHHTCTTTCCSHHHHHHHH-HHHHHHHHHHSSHH
T ss_pred HHHHHHHHHCcCCCCChHHHHHHH-HHHHHHHHHCCHHH
Confidence 577999999999877665544433 34566666655443
No 48
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=70.15 E-value=9.6 Score=22.25 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 22 tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~ 61 (72)
.|.+..++.|||..-+..+...+. .|+.-|+-|..+..+
T Consensus 37 ayr~l~~~~HPDk~~~~~~~~~f~-~i~~Ay~~L~d~~~R 75 (88)
T 2cug_A 37 AYKKLAREWHPDKNKDPGAEDRFI-QISKAYEILSNEEKR 75 (88)
T ss_dssp HHHHHHHHSCTTTCCSTTHHHHHH-HHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCcCCCCChhHHHHHH-HHHHHHHHHCCHHHH
Confidence 566889999999876554444332 456777777666544
No 49
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=67.97 E-value=12 Score=23.67 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHHHHHhhhc----C---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 036348 22 TRKRILNQIY----P---DIRISSKAMGIMNSFINDIFEKLAWEASRLARYKKKPSIH 72 (72)
Q Consensus 22 tY~kVLKqVh----p---~~gISskam~imnSfvnDiFerIA~EAs~L~~~nkr~Tl~ 72 (72)
.|.++.+++- + +.-+++.|+..+.--..+..-.+..+|..++.+.+|.||.
T Consensus 32 PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~ 89 (100)
T 2yfv_A 32 PFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIM 89 (100)
T ss_dssp HHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred cHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 4447777664 2 6789999999888887777778888999999999999973
No 50
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=65.93 E-value=8 Score=21.87 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=22.9
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEA 59 (72)
Q Consensus 22 tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EA 59 (72)
.|.+..++.|||..-+..+...+ .-|+.-|+-|..+.
T Consensus 23 ayr~l~~~~HPD~~~~~~~~~~f-~~i~~Ay~~L~d~~ 59 (77)
T 1hdj_A 23 AYRRQALRYHPDKNKEPGAEEKF-KEIAEAYDVLSDPR 59 (77)
T ss_dssp HHHHHHHTTCTTTCCCTTHHHHH-HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCcCCCCCccHHHHH-HHHHHHHHHHCCHH
Confidence 57789999999987655443332 23455555554443
No 51
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.89 E-value=13 Score=21.98 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=14.7
Q ss_pred HHHHHHhhhcCCCCCcHHH
Q 036348 22 TRKRILNQIYPDIRISSKA 40 (72)
Q Consensus 22 tY~kVLKqVhp~~gISska 40 (72)
.|.+..++.|||..-...+
T Consensus 47 aYr~la~~~HPDk~~~~~~ 65 (90)
T 2ys8_A 47 AYRKLAVLLHPDKCVAPGS 65 (90)
T ss_dssp HHHHHHHHHCTTTCCCTTH
T ss_pred HHHHHHHHHCcCCCCCccH
Confidence 5779999999998755444
No 52
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.73 E-value=20 Score=20.87 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036348 21 ATRKRILNQIYPDIRISS--KAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISs--kam~imnSfvnDiFerIA~EAs~ 61 (72)
..|.+..++.|||..-+. .+...+ ..|+.-|+-|..+..+
T Consensus 28 ~ayr~l~~~~HPDk~~~~~~~a~~~f-~~i~~Ay~~L~d~~~R 69 (92)
T 2dmx_A 28 KAYRKLALRWHPDKNPDNKEEAEKKF-KLVSEAYEVLSDSKKR 69 (92)
T ss_dssp HHHHHHHHHTCTTTCSSCSHHHHHHH-HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHCCCCCCccHHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 367799999999986543 333333 3467777777666544
No 53
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=61.86 E-value=14 Score=21.35 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=24.8
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 036348 21 ATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWE 58 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~E 58 (72)
..|.++..+.|||.|-|. -+-+.||.--|+|-.|
T Consensus 26 ~~yr~Lm~~nhPDkGGS~----yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 26 NRFNYLFEVNDKEKGGSF----YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHHHHTCGGGTCCH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHHHHH
Confidence 367799999999999885 3445666666666554
No 54
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.14 E-value=12 Score=22.39 Aligned_cols=39 Identities=21% Similarity=0.110 Sum_probs=23.2
Q ss_pred HHHHHHhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRI-SSKAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 22 tY~kVLKqVhp~~gI-Sskam~imnSfvnDiFerIA~EAs~ 61 (72)
.|.+..++.|||..- +..+...+ .-|+.-|+-|..+..+
T Consensus 37 ayr~l~~~~HPDk~~~~~~a~~~f-~~i~~Ay~~L~d~~~R 76 (99)
T 2yua_A 37 AYYRQCFLYHPDRNSGSAEAAERF-TRISQAYVVLGSATLR 76 (99)
T ss_dssp HHHHHHHHSCTTTCSSCSHHHHHH-HHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHCcCCCCCCHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 566889999999865 33443332 2345556655554433
No 55
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=54.49 E-value=2.1 Score=23.39 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=13.4
Q ss_pred ccCCchHHHH--HHHhhhcCC
Q 036348 15 QRKTPLATRK--RILNQIYPD 33 (72)
Q Consensus 15 ~~k~~~~tY~--kVLKqVhp~ 33 (72)
++..-.++.. ++||||||.
T Consensus 16 preql~esir~g~elkqitpp 36 (38)
T 3mn5_S 16 PREQLMESIRKGKELKQITPP 36 (38)
T ss_pred cHHHHHHHHHccccccccCCC
Confidence 3444456665 999999995
No 56
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.66 E-value=19 Score=21.93 Aligned_cols=39 Identities=26% Similarity=0.136 Sum_probs=24.1
Q ss_pred HHHHHHhhhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRIS-SKAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 22 tY~kVLKqVhp~~gIS-skam~imnSfvnDiFerIA~EAs~ 61 (72)
.|.+..++.|||..-. ..|...+ .-|+.-|+-|..+..+
T Consensus 40 ayr~l~~~~HPDk~~~~~~a~~~f-~~i~~Ay~vL~d~~~R 79 (112)
T 2ctq_A 40 EFKVRALECHPDKHPENPKAVETF-QKLQKAKEILTNEESR 79 (112)
T ss_dssp HHHHHHHTTCTTTCTTCSTHHHHH-HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 5678999999998763 3343333 2346666666555443
No 57
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=53.56 E-value=23 Score=21.49 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=22.1
Q ss_pred HHHHHHhhhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRIS-SKAMGIMNSFINDIFEKLAWEA 59 (72)
Q Consensus 22 tY~kVLKqVhp~~gIS-skam~imnSfvnDiFerIA~EA 59 (72)
.|.+..++.|||..-. ..+...+ .-|+.-|+-|..+.
T Consensus 37 aYr~la~~~HPDk~~~~~~a~~~f-~~i~~Ay~vL~d~~ 74 (109)
T 2ctw_A 37 SYRKLALKYHPDKNPDNPEAADKF-KEINNAHAILTDAT 74 (109)
T ss_dssp HHHHHHHHSCTTTSTTCHHHHHHH-HHHHHHHHHHTCHH
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHH-HHHHHHHHHHcCHH
Confidence 5668899999998653 3343332 23455555555443
No 58
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=51.87 E-value=31 Score=20.56 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHhhhcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRISS--KAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 22 tY~kVLKqVhp~~gISs--kam~imnSfvnDiFerIA~EAs~ 61 (72)
.|.+..++.|||..-.. .|...+ .-|+.-||-|..+.++
T Consensus 36 aYrkla~~~HPDk~~~~~~~a~~~F-~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 36 IIRRLYLKWHPDKNPENHDIANEVF-KHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHTCTTTSSSCHHHHHHHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCCCchHHHHHHH-HHHHHHHHHHHhhccc
Confidence 67799999999986653 233333 3456777777766554
No 59
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.30 E-value=16 Score=20.67 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=20.9
Q ss_pred HHHHHHhhhcCCCCCcH--HHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRISS--KAMGIMNSFINDIFEKLAWE 58 (72)
Q Consensus 22 tY~kVLKqVhp~~gISs--kam~imnSfvnDiFerIA~E 58 (72)
.|.+..++.|||..-+. .+...+ .-|++-|+-|..+
T Consensus 29 ayr~l~~~~HPDk~~~~~~~a~~~f-~~i~~Ay~~L~d~ 66 (82)
T 2ej7_A 29 AYRKLALKWHPDKNPENKEEAERRF-KQVAEAYEVLSDA 66 (82)
T ss_dssp HHHHHHTTSCTTTCSTTHHHHHHHH-HHHHHHHHHHSST
T ss_pred HHHHHHHHHCcCCCCCcHHHHHHHH-HHHHHHHHHHCCH
Confidence 56789999999986553 222222 2345555554433
No 60
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=51.30 E-value=25 Score=19.53 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 036348 21 ATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEA 59 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EA 59 (72)
..|.+..++.|||.+-+.. .. =..|+.-|+-|..+.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~--~~-f~~i~~Ay~~L~d~~ 62 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGA--EQ-FKQISQAYEVLSDEK 62 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCH--HH-HHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHCcCCCcCHH--HH-HHHHHHHHHHHCCHH
Confidence 3577889999999865421 11 123455555554443
No 61
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=51.05 E-value=38 Score=20.32 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=24.9
Q ss_pred HHHHHHHhhhcCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036348 21 ATRKRILNQIYPDIRISS--KAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISs--kam~imnSfvnDiFerIA~EAs~ 61 (72)
..|.+..++.|||..-+. .+...+ .-|+.-|+-|..+..+
T Consensus 21 ~aYr~la~~~HPDk~~~~~~~a~~~f-~~I~~AY~vL~d~~~R 62 (99)
T 2lgw_A 21 KAYRRKALQWHPDKNPDNKEFAEKKF-KEVAEAYEVLSDKHKR 62 (99)
T ss_dssp HHHHHHHHHTSTTTCCSCCHHHHHHH-HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHCcCCCCccHHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 367799999999986543 233333 3456666666655443
No 62
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=50.38 E-value=32 Score=20.84 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=28.5
Q ss_pred HHHHHHhhhcC--CCCCcHHHHHH----HHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYP--DIRISSKAMGI----MNSFINDIFEKLAWEA 59 (72)
Q Consensus 22 tY~kVLKqVhp--~~gISskam~i----mnSfvnDiFerIA~EA 59 (72)
+-.++|++.+. .+.|++.|+.. |+-||+.-+.|=+.||
T Consensus 13 lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a 56 (81)
T 3b0b_C 13 TVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQA 56 (81)
T ss_dssp HHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33488898877 58999999875 5667777777776665
No 63
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=47.68 E-value=35 Score=20.42 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHHHHHhhhcCCCCCc----HHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRIS----SKAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 22 tY~kVLKqVhp~~gIS----skam~imnSfvnDiFerIA~EAs~ 61 (72)
.|.+..++.|||..-+ ..+...+ .-|+.-||-|..+..+
T Consensus 36 aYr~l~~~~HPDk~~~~~~~~~a~~~f-~~i~~AY~~L~d~~~R 78 (109)
T 2qsa_A 36 AYRALARKHHPDRVKNKEEKLLAEERF-RVIATAYETLKDDEAK 78 (109)
T ss_dssp HHHHHHHHTCGGGCCSHHHHHHHHHHH-HHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCcCCCCCccccHHHHHHH-HHHHHHHHHHCCHHHH
Confidence 5778999999997655 2222222 2345556655554443
No 64
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=41.88 E-value=46 Score=19.51 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=12.4
Q ss_pred chHHHH----HHHhhhcCCCC
Q 036348 19 PLATRK----RILNQIYPDIR 35 (72)
Q Consensus 19 ~~~tY~----kVLKqVhp~~g 35 (72)
.|.-|. .-+++.||+++
T Consensus 29 ay~lF~~~~r~~~k~~~p~~~ 49 (97)
T 2lhj_A 29 SYMFFAKEKRVEIIAENPEIA 49 (97)
T ss_dssp SSTHHHHGGGGGHHHHCTTST
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 566665 66777899977
No 65
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=40.02 E-value=22 Score=22.26 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=23.9
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 21 ATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~ 61 (72)
..|.+..++.|||.+=+...+. -||.-||-|..+..+
T Consensus 29 ~aYr~la~~~HPDk~~~~e~f~----~I~~AYevL~d~~~R 65 (114)
T 1gh6_A 29 KAYLKKCKEFHPDKGGDEEKMK----KMNTLYKKMEDGVKY 65 (114)
T ss_dssp HHHHHTTTTCCTTTCCTTTTTH----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCccHHHHH----HHHHHHHHHCCHHHH
Confidence 3677999999999876533222 345666666655443
No 66
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=38.77 E-value=47 Score=19.33 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=20.1
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 036348 22 TRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEA 59 (72)
Q Consensus 22 tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EA 59 (72)
.|.+..++.|||..-.... .=.-|+.-|+-|..+.
T Consensus 28 ayr~l~~~~HPDk~~~~~~---~f~~i~~Ay~~L~d~~ 62 (92)
T 2o37_A 28 GYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDPQ 62 (92)
T ss_dssp HHHHHHHHHCTTSTTCCHH---HHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHCcCCCCChHH---HHHHHHHHHHHHCCHH
Confidence 5678999999997533211 1123455555555443
No 67
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=37.49 E-value=3.6 Score=27.81 Aligned_cols=17 Identities=47% Similarity=1.011 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 036348 49 NDIFEKLAWEASRLARY 65 (72)
Q Consensus 49 nDiFerIA~EAs~L~~~ 65 (72)
+||||+|.-..++|..|
T Consensus 102 ~~iFE~IGiDssKleKY 118 (136)
T 2rp5_A 102 NDIFERIGIDSSKLSKY 118 (136)
T ss_dssp SCHHHHHTCCGGGHHHH
T ss_pred HHHHHHhcccHHHHHHH
Confidence 68999999999999877
No 68
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=36.79 E-value=28 Score=23.62 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=24.5
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 21 ATRKRILNQIYPDIRISSKAMGIMNSFINDIFEKLAWEASRL 62 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gISskam~imnSfvnDiFerIA~EAs~L 62 (72)
..|.+..++.|||.+=+.+.+ .-|+.-||-|..+..+-
T Consensus 32 kAYRkLa~~~HPDk~~~~e~F----~~I~~AYevLsdp~kR~ 69 (174)
T 2pf4_E 32 KAYLKKCKEFHPDKGGDEEKM----KKMNTLYKKMEDGVKYA 69 (174)
T ss_dssp HHHHHHGGGCSCC---CCTTT----THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCHHHH----HHHHHHHHHhCCHHHHH
Confidence 367799999999987554333 34677788777776553
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=36.66 E-value=52 Score=19.86 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=20.4
Q ss_pred CCCCCcHHHHHHHHHHHHH--------HHHHHHHH
Q 036348 32 PDIRISSKAMGIMNSFIND--------IFEKLAWE 58 (72)
Q Consensus 32 p~~gISskam~imnSfvnD--------iFerIA~E 58 (72)
|.+.||.++..||.+|+.+ .-+.||.+
T Consensus 10 ~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~ 44 (71)
T 1wi3_A 10 SRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQ 44 (71)
T ss_dssp CCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4578899999999999888 45555554
No 70
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=36.25 E-value=69 Score=19.56 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=29.4
Q ss_pred chHHHHHHHhhhc--CCCCCcHHHHHH----HHHHHHHHHHHHHHHHH
Q 036348 19 PLATRKRILNQIY--PDIRISSKAMGI----MNSFINDIFEKLAWEAS 60 (72)
Q Consensus 19 ~~~tY~kVLKqVh--p~~gISskam~i----mnSfvnDiFerIA~EAs 60 (72)
+-++-.|+|++-+ +.+.||..|+.. |+-||+..+.|=+.+|-
T Consensus 14 ~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~ 61 (84)
T 4dra_E 14 RKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQ 61 (84)
T ss_dssp CHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455669999776 569999999876 45566666666665554
No 71
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=34.98 E-value=36 Score=21.66 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=25.1
Q ss_pred HHHHHHHhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Q 036348 21 ATRKRILNQIYPDIRI-SSKAMGIMNSFINDIFEKLAWEASR 61 (72)
Q Consensus 21 ~tY~kVLKqVhp~~gI-Sskam~imnSfvnDiFerIA~EAs~ 61 (72)
..|.+..++.|||..- +..|...+.. |+.-+|-|..+..+
T Consensus 21 ~ay~~l~~~~HPD~~~~~~~~~~~f~~-i~~Ay~~L~~~~~r 61 (210)
T 3apq_A 21 QAFKKLALKLHPDKNPNNPNAHGDFLK-INRAYEVLKDEDLR 61 (210)
T ss_dssp HHHHHHHHHHCGGGCTTCTTHHHHHHH-HHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHCcCCCCCChHHHHHHHH-HHHHHHHhCCHHHH
Confidence 3677999999999763 4444433322 56666666655443
No 72
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=30.12 E-value=25 Score=21.04 Aligned_cols=17 Identities=12% Similarity=0.387 Sum_probs=13.8
Q ss_pred chHHHHHHHhhhcCCCC
Q 036348 19 PLATRKRILNQIYPDIR 35 (72)
Q Consensus 19 ~~~tY~kVLKqVhp~~g 35 (72)
+-++|-|++++|+|++.
T Consensus 39 ~~a~FGK~ir~~FP~l~ 55 (76)
T 1dp7_P 39 NAASFGKLIRSVFMGLR 55 (76)
T ss_dssp CHHHHHHHHHHHSTTCE
T ss_pred CHHHHHHHHHHHCCCce
Confidence 55667799999999974
No 73
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=27.74 E-value=39 Score=21.66 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=18.4
Q ss_pred hhcCCCCCcHHHHHHHHHHHH
Q 036348 29 QIYPDIRISSKAMGIMNSFIN 49 (72)
Q Consensus 29 qVhp~~gISskam~imnSfvn 49 (72)
|=||+...+.....++..|++
T Consensus 167 QfHPE~~~~~~g~~il~nf~~ 187 (192)
T 1i1q_B 167 QFHPESILTTQGARLLEQTLA 187 (192)
T ss_dssp SSBTTSTTCTTHHHHHHHHHH
T ss_pred EccCcccCCcccHHHHHHHHH
Confidence 679999888889999999985
No 74
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=24.21 E-value=84 Score=19.80 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=12.8
Q ss_pred HHHHHHhhhcCCCCCc
Q 036348 22 TRKRILNQIYPDIRIS 37 (72)
Q Consensus 22 tY~kVLKqVhp~~gIS 37 (72)
.|.+..++.|||..-.
T Consensus 30 aYr~l~~~~HPDk~~~ 45 (155)
T 2l6l_A 30 KYQKLILMYHPDKQST 45 (155)
T ss_dssp HHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHCcCCCCC
Confidence 6779999999997543
No 75
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=23.76 E-value=28 Score=22.42 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.3
Q ss_pred hhhcCCCCCcHHHHHHH
Q 036348 28 NQIYPDIRISSKAMGIM 44 (72)
Q Consensus 28 KqVhp~~gISskam~im 44 (72)
.||.++--||.++|.+|
T Consensus 24 QQvF~~~~i~ee~Mvtv 40 (102)
T 1z8u_A 24 QQVFNDALVSEEDMVTV 40 (102)
T ss_dssp TCCGGGCCCCHHHHHHH
T ss_pred hcccCCCCCCHHHHHHH
Confidence 57999999999999753
No 76
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=23.63 E-value=44 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=16.8
Q ss_pred hhhcCCCCCcHHHHHHHHHHHH
Q 036348 28 NQIYPDIRISSKAMGIMNSFIN 49 (72)
Q Consensus 28 KqVhp~~gISskam~imnSfvn 49 (72)
=|=||+...+.....++..|++
T Consensus 163 vQfHPE~~~~~~g~~l~~~f~~ 184 (189)
T 1wl8_A 163 VQFHPEVAHTEKGEEILRNFAK 184 (189)
T ss_dssp ESSCTTSTTSTTHHHHHHHHHH
T ss_pred EecCCCcCCCcchHHHHHHHHH
Confidence 3779998776677788888874
No 77
>2doq_D SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell cycle; 3.00A {Saccharomyces cerevisiae}
Probab=23.47 E-value=21 Score=22.73 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=16.7
Q ss_pred HHHhhhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 036348 25 RILNQIYPDIRISSKAMGIMNSFINDIFEKLAW 57 (72)
Q Consensus 25 kVLKqVhp~~gISskam~imnSfvnDiFerIA~ 57 (72)
+-|++.+ .+-.++.--=|-|||++|++|-.
T Consensus 58 kWl~~~~---~~k~k~~LADnffln~~F~~ikk 87 (94)
T 2doq_D 58 QWITLTQ---TFKEQSRLADQAFLNKMFRKILK 87 (94)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 22333333347899999999843
No 78
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=22.01 E-value=46 Score=19.75 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHHHhhhcCCCCCc
Q 036348 22 TRKRILNQIYPDIRIS 37 (72)
Q Consensus 22 tY~kVLKqVhp~~gIS 37 (72)
.|.+..++.|||..-+
T Consensus 23 ayr~l~~~~HPDk~~~ 38 (103)
T 1bq0_A 23 AYKRLAMKYHPDRNQG 38 (103)
T ss_dssp HHHHHHTTTCTTTCTT
T ss_pred HHHHHHHHHCcCCCCC
Confidence 5779999999997653
No 79
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=21.80 E-value=37 Score=21.84 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=15.3
Q ss_pred hhcCCCCCcHHHHHHHHHHHH
Q 036348 29 QIYPDIRISSKAMGIMNSFIN 49 (72)
Q Consensus 29 qVhp~~gISskam~imnSfvn 49 (72)
|=||+.+ +.....|+..|++
T Consensus 183 QFHPE~s-~~~G~~ll~nFl~ 202 (211)
T 4gud_A 183 QFHPERS-SKAGARLIQNFLE 202 (211)
T ss_dssp SSCGGGS-HHHHHHHHHHHHH
T ss_pred EccCEec-CccHHHHHHHHHH
Confidence 5699963 6667889999973
No 80
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=21.68 E-value=44 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036348 40 AMGIMNSFINDIFEKLAW 57 (72)
Q Consensus 40 am~imnSfvnDiFerIA~ 57 (72)
--.|.+|||+||.-=+-.
T Consensus 50 F~~IVtSlV~dIImPlIg 67 (174)
T 2oar_A 50 FTALVTKFTDSIITPLIN 67 (174)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 346899999999865543
No 81
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=21.59 E-value=38 Score=21.69 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.1
Q ss_pred hhcCCCCCcHHHHHHHHHHHH
Q 036348 29 QIYPDIRISSKAMGIMNSFIN 49 (72)
Q Consensus 29 qVhp~~gISskam~imnSfvn 49 (72)
|-||+.. +.....++..|++
T Consensus 176 QfHPE~~-~~~~~~l~~~f~~ 195 (201)
T 1gpw_B 176 QFHPEKS-SKIGRKLLEKVIE 195 (201)
T ss_dssp SSCGGGS-HHHHHHHHHHHHH
T ss_pred ECCCccc-CHhHHHHHHHHHH
Confidence 6799987 6666778887764
No 82
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=21.03 E-value=53 Score=21.12 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=17.9
Q ss_pred hhhcCCCCCcHHHHHHHHHHHH
Q 036348 28 NQIYPDIRISSKAMGIMNSFIN 49 (72)
Q Consensus 28 KqVhp~~gISskam~imnSfvn 49 (72)
=|=||+...+.....|+..|++
T Consensus 172 vQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 172 VQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp ESSBTTSTTCTTHHHHHHHHHH
T ss_pred EecCCCCCCCccHHHHHHHHHh
Confidence 3679998877778889999986
No 83
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=20.20 E-value=1.1e+02 Score=17.60 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=16.4
Q ss_pred HhhhcCCCCCcHH-HHHHHHHHHHHHHHHHH
Q 036348 27 LNQIYPDIRISSK-AMGIMNSFINDIFEKLA 56 (72)
Q Consensus 27 LKqVhp~~gISsk-am~imnSfvnDiFerIA 56 (72)
..++.-.+|+|.+ +-.+++.|+.-|-+.|+
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~ 37 (90)
T 2o97_B 7 IDKIAAGADISKAAAGRALDAIIASVTESLK 37 (90)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4445556788764 45566666555555443
Done!