Query 036352
Match_columns 493
No_of_seqs 262 out of 1605
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:48:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 3.8E-76 8.3E-81 558.5 35.6 374 84-477 34-419 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 4.2E-66 9.1E-71 551.4 46.8 377 83-474 24-406 (657)
3 PTZ00400 DnaK-type molecular c 100.0 4E-66 8.7E-71 555.7 44.2 377 84-474 39-420 (663)
4 PRK13410 molecular chaperone D 100.0 1.3E-65 2.8E-70 550.1 46.9 375 86-474 2-381 (668)
5 PRK13411 molecular chaperone D 100.0 2.1E-65 4.6E-70 549.9 46.6 374 86-473 2-380 (653)
6 PRK00290 dnaK molecular chaper 100.0 1.1E-64 2.4E-69 544.9 47.9 373 86-474 2-379 (627)
7 PLN03184 chloroplast Hsp70; Pr 100.0 1.8E-64 3.9E-69 543.1 46.7 377 84-474 37-418 (673)
8 PTZ00009 heat shock 70 kDa pro 100.0 5.6E-64 1.2E-68 539.6 46.5 370 85-473 3-385 (653)
9 TIGR02350 prok_dnaK chaperone 100.0 9.8E-64 2.1E-68 535.9 46.4 371 88-473 2-376 (595)
10 TIGR01991 HscA Fe-S protein as 100.0 1.2E-63 2.7E-68 531.9 46.5 365 88-476 1-367 (599)
11 CHL00094 dnaK heat shock prote 100.0 4.1E-63 8.9E-68 531.1 46.8 375 86-474 2-381 (621)
12 KOG0102 Molecular chaperones m 100.0 2.4E-64 5.3E-69 494.7 31.0 381 83-477 24-409 (640)
13 PRK05183 hscA chaperone protei 100.0 5.7E-62 1.2E-66 520.2 46.0 362 85-475 18-382 (616)
14 PF00012 HSP70: Hsp70 protein; 100.0 1.2E-61 2.5E-66 524.0 39.8 375 88-481 1-388 (602)
15 COG0443 DnaK Molecular chapero 100.0 9.6E-61 2.1E-65 503.5 39.6 355 86-475 5-363 (579)
16 KOG0101 Molecular chaperones H 100.0 5.9E-59 1.3E-63 475.3 31.7 376 83-477 4-391 (620)
17 KOG0103 Molecular chaperones H 100.0 2.6E-58 5.6E-63 465.3 31.5 381 88-487 3-399 (727)
18 PRK01433 hscA chaperone protei 100.0 7.1E-57 1.5E-61 476.8 41.8 338 86-474 19-361 (595)
19 KOG0104 Molecular chaperones G 100.0 5.6E-54 1.2E-58 434.6 34.3 390 83-491 19-437 (902)
20 PRK11678 putative chaperone; P 100.0 1.1E-52 2.5E-57 430.2 39.8 336 88-470 2-448 (450)
21 PRK13928 rod shape-determining 100.0 4.3E-39 9.3E-44 322.3 34.6 309 88-472 5-326 (336)
22 PRK13929 rod-share determining 100.0 1.2E-38 2.6E-43 318.2 34.4 306 87-468 5-325 (335)
23 PRK13927 rod shape-determining 100.0 1.6E-36 3.6E-41 304.0 34.2 307 87-470 6-325 (334)
24 TIGR00904 mreB cell shape dete 100.0 4.9E-36 1.1E-40 300.0 34.0 308 88-469 4-327 (333)
25 PRK13930 rod shape-determining 100.0 7.3E-36 1.6E-40 299.6 33.5 308 88-471 10-330 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 3.1E-35 6.7E-40 287.2 17.4 309 87-469 2-321 (326)
27 COG1077 MreB Actin-like ATPase 100.0 6.5E-31 1.4E-35 246.8 26.2 316 86-471 6-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.4E-29 3E-34 240.1 22.5 203 197-465 35-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 1.5E-26 3.2E-31 223.2 27.8 201 201-467 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 1.6E-23 3.4E-28 212.8 25.8 196 236-466 157-371 (371)
31 PRK09472 ftsA cell division pr 99.9 4.5E-23 9.8E-28 211.9 27.9 198 238-469 167-388 (420)
32 COG0849 ftsA Cell division ATP 99.9 5.3E-21 1.2E-25 191.7 25.7 326 87-470 7-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.8 1.2E-18 2.6E-23 177.2 17.8 315 88-469 1-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.8 8E-18 1.7E-22 171.4 15.4 301 87-469 2-347 (373)
35 PTZ00280 Actin-related protein 99.7 5.5E-15 1.2E-19 152.3 24.1 286 86-443 4-337 (414)
36 PTZ00452 actin; Provisional 99.7 5.2E-15 1.1E-19 149.9 22.0 303 86-469 5-349 (375)
37 COG4820 EutJ Ethanolamine util 99.7 2.4E-16 5.2E-21 138.0 8.5 196 206-467 76-272 (277)
38 PRK13917 plasmid segregation p 99.6 2E-13 4.3E-18 136.7 26.4 204 226-474 115-341 (344)
39 PF00022 Actin: Actin; InterP 99.6 8.5E-15 1.8E-19 150.3 16.7 311 86-470 4-368 (393)
40 PTZ00466 actin-like protein; P 99.6 1.9E-14 4.1E-19 146.1 18.7 305 87-469 13-354 (380)
41 PTZ00004 actin-2; Provisional 99.6 2.7E-14 5.9E-19 145.2 18.8 302 87-469 7-352 (378)
42 PTZ00281 actin; Provisional 99.6 2.2E-14 4.7E-19 145.8 16.9 306 87-469 7-350 (376)
43 TIGR01175 pilM type IV pilus a 99.5 2.5E-12 5.3E-17 129.9 24.1 179 236-467 142-347 (348)
44 KOG0679 Actin-related protein 99.5 1.4E-12 3E-17 125.3 19.3 324 87-469 12-399 (426)
45 TIGR03739 PRTRC_D PRTRC system 99.5 5.1E-12 1.1E-16 125.7 19.6 203 222-468 101-319 (320)
46 PF11104 PilM_2: Type IV pilus 99.4 4.3E-13 9.4E-18 134.6 11.4 200 211-467 94-339 (340)
47 COG4972 PilM Tfp pilus assembl 99.2 8.9E-10 1.9E-14 104.8 20.0 177 238-467 150-352 (354)
48 COG5277 Actin and related prot 99.2 3.7E-10 8E-15 115.6 17.7 191 89-324 9-204 (444)
49 PF06406 StbA: StbA protein; 99.2 5.8E-10 1.3E-14 110.7 17.2 173 251-465 140-317 (318)
50 PRK10719 eutA reactivating fac 98.9 2.6E-09 5.7E-14 107.6 9.5 83 224-316 89-184 (475)
51 PF07520 SrfB: Virulence facto 98.9 3.2E-07 6.9E-12 99.9 23.0 323 140-469 331-834 (1002)
52 KOG0676 Actin and related prot 98.8 2E-07 4.3E-12 92.4 15.1 241 198-469 75-346 (372)
53 TIGR03192 benz_CoA_bzdQ benzoy 98.7 4.3E-06 9.2E-11 80.5 21.0 69 394-469 219-288 (293)
54 TIGR00241 CoA_E_activ CoA-subs 98.6 1.4E-06 3E-11 83.6 14.2 170 255-466 73-248 (248)
55 TIGR03286 methan_mark_15 putat 98.5 4.3E-06 9.2E-11 83.6 17.4 46 420-468 357-402 (404)
56 COG1924 Activator of 2-hydroxy 98.5 8.6E-06 1.9E-10 79.5 18.6 73 391-470 318-391 (396)
57 PRK13317 pantothenate kinase; 98.4 6.4E-05 1.4E-09 72.8 21.2 49 418-469 222-274 (277)
58 KOG0680 Actin-related protein 98.2 0.00012 2.6E-09 69.7 16.9 98 222-324 92-200 (400)
59 KOG0677 Actin-related protein 98.2 5.8E-05 1.2E-09 69.7 14.3 194 222-442 100-318 (389)
60 TIGR02261 benz_CoA_red_D benzo 98.1 0.00053 1.1E-08 65.3 20.8 69 393-467 189-262 (262)
61 PF08841 DDR: Diol dehydratase 98.0 0.00017 3.6E-09 67.7 14.0 194 245-467 104-329 (332)
62 COG4457 SrfB Uncharacterized p 97.8 0.0018 4E-08 67.3 18.3 87 378-469 740-846 (1014)
63 KOG0797 Actin-related protein 97.5 0.00085 1.8E-08 67.8 11.6 121 196-323 195-322 (618)
64 PF14574 DUF4445: Domain of un 97.5 0.003 6.4E-08 64.3 15.5 59 380-439 290-348 (412)
65 KOG0681 Actin-related protein 97.5 0.0012 2.5E-08 67.4 11.7 122 197-324 90-216 (645)
66 TIGR00555 panK_eukar pantothen 97.4 0.029 6.4E-07 54.2 20.1 46 417-465 229-278 (279)
67 PF01869 BcrAD_BadFG: BadF/Bad 97.3 0.095 2E-06 50.8 23.1 71 391-467 196-271 (271)
68 COG1069 AraB Ribulose kinase [ 97.3 0.0045 9.7E-08 63.7 14.0 226 241-478 233-487 (544)
69 PF06277 EutA: Ethanolamine ut 97.2 0.002 4.4E-08 65.7 10.4 71 224-294 86-164 (473)
70 TIGR02259 benz_CoA_red_A benzo 97.2 0.0052 1.1E-07 61.3 12.6 68 394-467 360-432 (432)
71 PF02782 FGGY_C: FGGY family o 97.0 0.00079 1.7E-08 62.0 4.4 75 391-469 121-196 (198)
72 TIGR01315 5C_CHO_kinase FGGY-f 96.8 0.0051 1.1E-07 65.9 9.3 88 384-475 409-496 (541)
73 PRK15027 xylulokinase; Provisi 96.7 0.0044 9.6E-08 65.5 7.7 87 384-476 355-441 (484)
74 KOG2517 Ribulose kinase and re 96.5 0.01 2.2E-07 61.6 8.2 76 396-475 391-467 (516)
75 PRK00047 glpK glycerol kinase; 96.4 0.01 2.2E-07 63.1 8.1 84 386-476 373-457 (498)
76 PRK13321 pantothenate kinase; 96.4 0.13 2.8E-06 49.5 14.9 19 88-106 2-20 (256)
77 PRK04123 ribulokinase; Provisi 96.4 0.0088 1.9E-07 64.3 7.6 83 386-475 409-492 (548)
78 TIGR01312 XylB D-xylulose kina 96.3 0.012 2.5E-07 62.3 8.3 55 418-476 390-444 (481)
79 PTZ00294 glycerol kinase-like 96.3 0.011 2.4E-07 62.8 8.1 54 418-475 406-459 (504)
80 TIGR01311 glycerol_kin glycero 96.3 0.0098 2.1E-07 63.0 7.4 54 418-475 399-452 (493)
81 PRK10331 L-fuculokinase; Provi 96.2 0.013 2.8E-07 61.8 7.6 85 385-476 358-443 (470)
82 PLN02669 xylulokinase 96.2 0.015 3.3E-07 62.3 8.3 76 386-469 417-492 (556)
83 TIGR02628 fuculo_kin_coli L-fu 96.1 0.014 3E-07 61.4 7.5 84 384-476 361-447 (465)
84 TIGR01234 L-ribulokinase L-rib 96.1 0.016 3.6E-07 62.0 7.8 84 385-475 405-489 (536)
85 PLN02295 glycerol kinase 96.1 0.027 5.8E-07 60.0 9.3 54 418-475 412-465 (512)
86 COG1070 XylB Sugar (pentulose 96.1 0.24 5.3E-06 52.6 16.5 83 385-472 370-452 (502)
87 PRK10854 exopolyphosphatase; P 95.9 0.09 1.9E-06 55.9 12.5 74 238-317 98-176 (513)
88 TIGR01314 gntK_FGGY gluconate 95.9 0.019 4.2E-07 61.0 7.3 55 418-476 401-455 (505)
89 TIGR02627 rhamnulo_kin rhamnul 95.9 0.042 9.1E-07 57.6 9.8 84 386-476 357-440 (454)
90 PF14450 FtsA: Cell division p 95.7 0.0073 1.6E-07 50.8 2.7 50 276-325 1-56 (120)
91 PRK10640 rhaB rhamnulokinase; 95.7 0.057 1.2E-06 56.8 9.9 54 418-476 375-428 (471)
92 PRK10939 autoinducer-2 (AI-2) 95.7 0.04 8.6E-07 58.8 8.8 54 418-475 409-462 (520)
93 smart00842 FtsA Cell division 95.6 0.092 2E-06 47.9 9.6 30 237-266 157-186 (187)
94 PRK09585 anmK anhydro-N-acetyl 95.4 0.44 9.6E-06 47.9 14.2 66 402-470 273-339 (365)
95 KOG0678 Actin-related protein 95.3 0.94 2E-05 44.0 15.3 97 223-322 106-208 (415)
96 KOG2531 Sugar (pentulose and h 95.1 0.073 1.6E-06 53.7 7.5 54 412-469 436-489 (545)
97 PRK11031 guanosine pentaphosph 95.0 0.43 9.3E-06 50.6 13.8 75 238-318 93-172 (496)
98 PRK13318 pantothenate kinase; 95.0 1 2.2E-05 43.3 15.1 19 88-106 2-20 (258)
99 PRK13320 pantothenate kinase; 94.9 1.4 3.1E-05 41.9 15.8 21 86-106 2-22 (244)
100 COG4819 EutA Ethanolamine util 94.9 0.17 3.7E-06 49.0 9.0 69 225-293 89-165 (473)
101 TIGR03706 exo_poly_only exopol 94.5 0.41 8.9E-06 47.2 11.3 72 240-317 89-164 (300)
102 PRK13326 pantothenate kinase; 94.4 3 6.6E-05 40.1 16.8 22 86-107 6-27 (262)
103 TIGR00671 baf pantothenate kin 94.2 0.87 1.9E-05 43.3 12.5 19 89-107 2-20 (243)
104 COG3426 Butyrate kinase [Energ 94.1 0.78 1.7E-05 43.7 11.4 58 416-477 294-353 (358)
105 COG1521 Pantothenate kinase ty 94.1 1.8 3.9E-05 41.2 14.0 43 388-430 182-224 (251)
106 TIGR03723 bact_gcp putative gl 93.7 8 0.00017 38.3 19.8 72 388-464 233-308 (314)
107 TIGR00744 ROK_glcA_fam ROK fam 93.5 8.4 0.00018 38.0 20.9 41 248-290 96-140 (318)
108 COG0554 GlpK Glycerol kinase [ 93.4 3.2 7E-05 42.8 15.3 53 418-474 402-454 (499)
109 KOG0681 Actin-related protein 92.9 0.082 1.8E-06 54.4 3.2 67 400-469 538-614 (645)
110 PRK13324 pantothenate kinase; 92.8 2.6 5.7E-05 40.4 13.2 19 88-106 2-20 (258)
111 PF14450 FtsA: Cell division p 92.7 0.02 4.3E-07 48.2 -1.3 21 88-108 1-21 (120)
112 PRK13322 pantothenate kinase; 92.6 2 4.3E-05 41.0 12.0 18 88-105 2-19 (246)
113 PF07318 DUF1464: Protein of u 92.6 1.2 2.5E-05 44.2 10.4 71 396-474 242-320 (343)
114 COG1548 Predicted transcriptio 91.8 0.82 1.8E-05 42.9 7.9 64 209-290 77-147 (330)
115 PRK09557 fructokinase; Reviewe 91.1 16 0.00036 35.7 21.7 50 418-467 244-299 (301)
116 PRK14878 UGMP family protein; 90.6 19 0.00042 35.8 21.7 31 418-448 241-274 (323)
117 PF03702 UPF0075: Uncharacteri 90.0 0.21 4.5E-06 50.3 2.5 74 394-470 263-338 (364)
118 COG2971 Predicted N-acetylgluc 89.9 20 0.00044 34.9 20.6 183 253-471 99-293 (301)
119 PRK13329 pantothenate kinase; 89.3 12 0.00025 35.8 13.7 17 88-104 3-19 (249)
120 PTZ00340 O-sialoglycoprotein e 89.2 26 0.00057 35.1 19.8 41 397-442 247-287 (345)
121 COG2377 Predicted molecular ch 88.9 5.6 0.00012 39.6 11.4 168 273-470 162-344 (371)
122 COG2192 Predicted carbamoyl tr 88.8 34 0.00075 36.1 23.2 95 383-484 254-349 (555)
123 COG0248 GppA Exopolyphosphatas 88.7 15 0.00033 38.7 15.1 54 239-292 91-148 (492)
124 PF08735 DUF1786: Putative pyr 88.7 4.9 0.00011 38.1 10.4 94 220-318 111-210 (254)
125 PRK09604 UGMP family protein; 88.3 30 0.00064 34.6 24.9 67 402-473 243-312 (332)
126 TIGR03281 methan_mark_12 putat 88.1 2.3 5E-05 41.2 7.9 52 419-475 263-317 (326)
127 KOG2708 Predicted metalloprote 86.3 5.9 0.00013 36.7 9.1 54 384-442 224-278 (336)
128 PLN00130 succinate dehydrogena 86.3 0.11 2.4E-06 45.4 -1.8 52 51-106 25-77 (213)
129 PRK14101 bifunctional glucokin 84.8 31 0.00068 37.8 15.9 22 83-104 15-36 (638)
130 PLN02405 hexokinase 83.8 16 0.00035 38.6 12.3 53 235-288 204-259 (497)
131 PRK09698 D-allose kinase; Prov 83.7 46 0.00099 32.5 21.9 34 249-283 104-140 (302)
132 COG4012 Uncharacterized protei 83.5 5.9 0.00013 37.5 7.9 88 230-325 186-277 (342)
133 PLN02596 hexokinase-like 83.5 6 0.00013 41.6 9.0 55 235-290 204-261 (490)
134 PF02543 CmcH_NodU: Carbamoylt 82.7 4.6 9.9E-05 40.9 7.7 85 383-473 131-217 (360)
135 TIGR00143 hypF [NiFe] hydrogen 82.4 4.8 0.0001 44.5 8.2 51 418-468 658-711 (711)
136 PTZ00107 hexokinase; Provision 82.1 14 0.0003 38.7 11.1 54 231-284 189-248 (464)
137 PRK00976 hypothetical protein; 82.0 8.9 0.00019 37.9 9.0 52 418-474 263-316 (326)
138 COG1940 NagC Transcriptional r 81.7 17 0.00036 35.9 11.2 33 249-282 106-141 (314)
139 PF02541 Ppx-GppA: Ppx/GppA ph 80.6 1.9 4.2E-05 42.0 4.1 72 240-317 75-151 (285)
140 PLN02914 hexokinase 80.6 15 0.00033 38.6 10.8 55 235-290 204-261 (490)
141 PF00370 FGGY_N: FGGY family o 79.7 2.1 4.5E-05 40.6 3.9 20 87-106 1-20 (245)
142 PRK03011 butyrate kinase; Prov 78.4 11 0.00024 38.1 8.7 56 418-476 295-351 (358)
143 smart00732 YqgFc Likely ribonu 77.7 2.3 5E-05 33.8 3.0 19 87-105 2-20 (99)
144 PLN02666 5-oxoprolinase 77.7 27 0.00059 41.3 12.6 80 384-469 453-534 (1275)
145 PF01968 Hydantoinase_A: Hydan 77.4 2.4 5.2E-05 41.5 3.6 67 395-466 218-284 (290)
146 PF08392 FAE1_CUT1_RppA: FAE1/ 76.3 4.1 8.9E-05 39.5 4.7 47 400-446 86-133 (290)
147 PRK09605 bifunctional UGMP fam 75.7 1.2E+02 0.0026 32.5 20.1 68 401-473 233-303 (535)
148 PRK13310 N-acetyl-D-glucosamin 75.1 86 0.0019 30.6 25.0 51 418-468 245-301 (303)
149 PF00480 ROK: ROK family; Int 75.0 59 0.0013 28.7 11.9 40 249-290 91-134 (179)
150 PLN02362 hexokinase 74.9 41 0.00089 35.7 12.0 49 235-284 204-255 (509)
151 COG0533 QRI7 Metal-dependent p 74.6 11 0.00025 37.2 7.3 48 390-442 237-285 (342)
152 TIGR00329 gcp_kae1 metallohydr 74.6 91 0.002 30.7 18.5 51 387-442 231-282 (305)
153 COG1070 XylB Sugar (pentulose 74.5 3.9 8.4E-05 43.5 4.5 22 85-106 3-24 (502)
154 PF03652 UPF0081: Uncharacteri 74.3 3.5 7.6E-05 35.3 3.4 21 87-107 2-22 (135)
155 TIGR02259 benz_CoA_red_A benzo 74.1 3.4 7.4E-05 41.8 3.6 22 86-107 2-23 (432)
156 PRK00109 Holliday junction res 72.8 4.3 9.4E-05 34.9 3.6 21 86-106 4-24 (138)
157 TIGR00241 CoA_E_activ CoA-subs 70.2 3.8 8.1E-05 39.1 2.9 19 88-106 2-20 (248)
158 PRK10939 autoinducer-2 (AI-2) 69.4 4.8 0.0001 43.0 3.8 21 86-106 3-23 (520)
159 PF02541 Ppx-GppA: Ppx/GppA ph 69.1 8.5 0.00018 37.5 5.2 92 15-109 41-135 (285)
160 TIGR03722 arch_KAE1 universal 68.9 1.3E+02 0.0027 29.9 21.2 45 418-462 242-289 (322)
161 PLN02920 pantothenate kinase 1 68.6 64 0.0014 32.8 11.2 51 416-469 295-352 (398)
162 COG5026 Hexokinase [Carbohydra 68.4 28 0.0006 35.7 8.5 57 41-103 35-92 (466)
163 cd00529 RuvC_resolvase Hollida 66.7 7.5 0.00016 34.1 3.8 17 88-104 2-18 (154)
164 PTZ00294 glycerol kinase-like 66.6 5.7 0.00012 42.2 3.7 19 87-105 3-21 (504)
165 cd06007 R3H_DEXH_helicase R3H 66.6 22 0.00047 25.7 5.5 29 225-253 16-44 (59)
166 PRK07058 acetate kinase; Provi 66.5 74 0.0016 32.5 11.2 47 393-443 297-344 (396)
167 PLN02377 3-ketoacyl-CoA syntha 66.3 9.4 0.0002 40.3 5.1 56 390-445 165-221 (502)
168 PF13941 MutL: MutL protein 65.8 6.5 0.00014 40.9 3.7 42 88-143 2-45 (457)
169 PRK10331 L-fuculokinase; Provi 65.7 5.4 0.00012 42.0 3.3 19 87-105 3-21 (470)
170 cd00529 RuvC_resolvase Hollida 65.2 70 0.0015 27.9 9.7 64 399-465 81-150 (154)
171 COG0816 Predicted endonuclease 64.5 7.3 0.00016 33.6 3.2 21 86-106 2-22 (141)
172 PLN02669 xylulokinase 63.5 8.4 0.00018 41.5 4.2 25 82-106 4-28 (556)
173 PRK13311 N-acetyl-D-glucosamin 63.1 1.4E+02 0.003 28.3 12.3 33 249-282 96-131 (256)
174 TIGR02628 fuculo_kin_coli L-fu 63.0 7.3 0.00016 40.9 3.6 20 87-106 2-21 (465)
175 PRK15027 xylulokinase; Provisi 61.6 7.5 0.00016 41.1 3.4 18 88-105 2-19 (484)
176 PRK13328 pantothenate kinase; 61.3 30 0.00065 33.1 7.2 19 88-106 3-21 (255)
177 PLN02192 3-ketoacyl-CoA syntha 61.1 14 0.0003 39.1 5.1 56 390-445 169-225 (511)
178 PRK04123 ribulokinase; Provisi 60.3 8.5 0.00018 41.4 3.6 19 86-104 3-21 (548)
179 TIGR01234 L-ribulokinase L-rib 59.4 9.3 0.0002 41.0 3.7 18 87-104 2-19 (536)
180 PLN02854 3-ketoacyl-CoA syntha 59.4 14 0.00031 39.2 4.9 54 392-445 183-237 (521)
181 TIGR01314 gntK_FGGY gluconate 59.3 8.8 0.00019 40.8 3.5 19 87-105 1-19 (505)
182 KOG1794 N-Acetylglucosamine ki 59.3 25 0.00055 34.0 6.0 72 399-473 242-320 (336)
183 PRK00047 glpK glycerol kinase; 59.1 9.7 0.00021 40.4 3.8 20 86-105 5-24 (498)
184 TIGR01311 glycerol_kin glycero 58.7 9.5 0.0002 40.4 3.6 19 87-105 2-20 (493)
185 KOG1369 Hexokinase [Carbohydra 57.4 24 0.00053 36.7 6.1 63 230-293 185-251 (474)
186 PLN02295 glycerol kinase 57.1 10 0.00022 40.4 3.5 18 88-105 2-19 (512)
187 KOG0797 Actin-related protein 57.0 3.3 7.2E-05 42.7 -0.2 54 418-471 526-591 (618)
188 TIGR01315 5C_CHO_kinase FGGY-f 56.9 10 0.00023 40.7 3.6 18 88-105 2-19 (541)
189 PRK13331 pantothenate kinase; 56.0 64 0.0014 30.8 8.3 23 85-107 6-28 (251)
190 cd02640 R3H_NRF R3H domain of 55.2 49 0.0011 23.9 5.6 30 224-253 16-45 (60)
191 TIGR02707 butyr_kinase butyrat 53.8 53 0.0012 33.1 7.8 69 393-465 271-341 (351)
192 PF00349 Hexokinase_1: Hexokin 53.6 6.1 0.00013 36.5 1.0 34 236-269 168-204 (206)
193 PLN03170 chalcone synthase; Pr 51.7 34 0.00073 35.2 6.1 52 396-447 105-157 (401)
194 PRK00039 ruvC Holliday junctio 51.6 17 0.00036 32.3 3.4 19 86-104 2-20 (164)
195 TIGR03706 exo_poly_only exopol 51.6 39 0.00085 33.2 6.4 89 16-108 56-147 (300)
196 PF02075 RuvC: Crossover junct 49.9 26 0.00056 30.5 4.3 17 88-104 1-17 (149)
197 PLN02932 3-ketoacyl-CoA syntha 49.0 35 0.00075 35.9 5.7 57 389-445 140-197 (478)
198 PRK00865 glutamate racemase; P 48.6 42 0.00091 32.2 5.9 44 418-467 177-220 (261)
199 PLN03173 chalcone synthase; Pr 47.9 39 0.00085 34.6 5.9 50 397-446 102-152 (391)
200 COG0145 HyuA N-methylhydantoin 46.8 22 0.00047 39.1 4.0 40 253-292 255-297 (674)
201 PF14574 DUF4445: Domain of un 46.7 50 0.0011 34.0 6.4 45 391-435 56-100 (412)
202 PRK10854 exopolyphosphatase; P 45.4 56 0.0012 34.9 6.8 92 15-109 66-160 (513)
203 cd02639 R3H_RRM R3H domain of 45.0 46 0.00099 24.1 4.1 30 224-253 16-45 (60)
204 PLN00415 3-ketoacyl-CoA syntha 43.3 35 0.00076 35.6 4.7 46 400-445 137-183 (466)
205 TIGR00250 RNAse_H_YqgF RNAse H 43.3 17 0.00037 30.9 2.0 17 89-105 1-17 (130)
206 COG4012 Uncharacterized protei 43.2 50 0.0011 31.5 5.1 71 275-352 2-96 (342)
207 PRK05082 N-acetylmannosamine k 42.9 88 0.0019 30.3 7.3 72 393-469 213-288 (291)
208 cd02641 R3H_Smubp-2_like R3H d 42.8 1.1E+02 0.0023 22.1 5.9 30 225-254 17-46 (60)
209 PLN03172 chalcone synthase fam 42.3 48 0.001 34.0 5.5 52 395-446 100-152 (393)
210 KOG2517 Ribulose kinase and re 41.8 37 0.00081 35.8 4.6 20 86-105 6-25 (516)
211 TIGR00067 glut_race glutamate 41.7 63 0.0014 30.8 5.9 42 418-465 172-213 (251)
212 PRK11031 guanosine pentaphosph 41.0 63 0.0014 34.3 6.3 90 16-108 62-154 (496)
213 PRK13331 pantothenate kinase; 40.6 34 0.00073 32.7 3.8 48 391-441 177-224 (251)
214 TIGR03123 one_C_unchar_1 proba 40.2 21 0.00046 35.3 2.5 44 397-448 261-304 (318)
215 PF05378 Hydant_A_N: Hydantoin 40.1 31 0.00067 31.0 3.3 18 89-106 2-19 (176)
216 PRK13327 pantothenate kinase; 39.9 87 0.0019 29.7 6.5 67 390-469 172-238 (242)
217 PRK12408 glucokinase; Provisio 39.8 22 0.00047 35.6 2.5 23 83-105 13-35 (336)
218 PRK00292 glk glucokinase; Prov 37.9 32 0.0007 33.9 3.4 36 247-282 88-136 (316)
219 PRK00180 acetate kinase A/prop 36.8 1.2E+02 0.0026 31.2 7.2 48 393-443 301-349 (402)
220 cd02646 R3H_G-patch R3H domain 34.6 1.1E+02 0.0024 21.7 4.9 40 211-253 4-43 (58)
221 PLN03168 chalcone synthase; Pr 34.4 68 0.0015 32.9 5.2 52 395-446 99-151 (389)
222 PF02075 RuvC: Crossover junct 34.1 2.3E+02 0.005 24.5 7.8 28 276-303 1-29 (149)
223 PF04481 DUF561: Protein of un 33.2 2.7E+02 0.0058 26.0 8.0 54 195-255 97-150 (242)
224 PF01968 Hydantoinase_A: Hydan 32.7 38 0.00082 33.1 2.9 40 252-291 54-95 (290)
225 PRK09604 UGMP family protein; 32.4 1.4E+02 0.003 29.8 6.9 67 395-465 49-121 (332)
226 COG0248 GppA Exopolyphosphatas 32.3 97 0.0021 32.8 6.0 97 17-116 60-160 (492)
227 COG0068 HypF Hydrogenase matur 30.7 1.8E+02 0.0039 32.0 7.5 52 417-468 692-746 (750)
228 TIGR01319 glmL_fam conserved h 30.5 33 0.00072 35.6 2.1 29 412-440 383-414 (463)
229 COG3894 Uncharacterized metal- 29.9 2.8E+02 0.006 29.3 8.4 46 273-318 163-210 (614)
230 TIGR00016 ackA acetate kinase. 29.7 1.9E+02 0.0041 29.7 7.3 46 395-443 307-353 (404)
231 TIGR00329 gcp_kae1 metallohydr 29.6 1.8E+02 0.004 28.5 7.2 68 394-465 45-118 (305)
232 PF12401 DUF3662: Protein of u 29.2 2.4E+02 0.0052 23.3 6.7 83 317-416 8-93 (116)
233 PF00814 Peptidase_M22: Glycop 29.2 5.2E+02 0.011 24.8 17.3 41 397-442 205-245 (268)
234 COG4126 Hydantoin racemase [Am 29.0 3.5E+02 0.0076 25.2 8.2 42 223-270 70-111 (230)
235 PRK11199 tyrA bifunctional cho 28.9 5.4E+02 0.012 26.1 10.7 15 311-325 13-27 (374)
236 PF01548 DEDD_Tnp_IS110: Trans 28.3 90 0.0019 26.5 4.2 20 88-107 1-20 (144)
237 COG0796 MurI Glutamate racemas 28.1 1.9E+02 0.0041 27.9 6.6 43 418-466 177-219 (269)
238 PTZ00288 glucokinase 1; Provis 28.0 58 0.0013 33.5 3.4 23 83-105 23-45 (405)
239 PRK14878 UGMP family protein; 27.9 2E+02 0.0044 28.5 7.2 66 394-463 41-112 (323)
240 PF13941 MutL: MutL protein 27.7 1.3E+02 0.0029 31.4 5.9 45 276-320 2-48 (457)
241 COG0020 UppS Undecaprenyl pyro 27.5 3.9E+02 0.0085 25.4 8.6 73 343-433 119-202 (245)
242 PF03309 Pan_kinase: Type III 27.0 71 0.0015 29.3 3.5 20 88-107 1-20 (206)
243 TIGR02627 rhamnulo_kin rhamnul 26.9 32 0.00069 36.0 1.3 17 89-105 1-17 (454)
244 TIGR03722 arch_KAE1 universal 26.7 2.2E+02 0.0048 28.2 7.2 64 394-461 42-111 (322)
245 COG4020 Uncharacterized protei 26.7 2E+02 0.0044 27.3 6.3 54 416-474 266-322 (332)
246 TIGR01312 XylB D-xylulose kina 26.5 44 0.00095 35.1 2.3 17 89-105 1-17 (481)
247 KOG2872 Uroporphyrinogen decar 26.2 2.7E+02 0.0059 27.1 7.1 70 384-459 219-288 (359)
248 PRK11024 colicin uptake protei 25.9 3.7E+02 0.008 22.9 7.6 70 184-260 68-140 (141)
249 PLN03171 chalcone synthase-lik 25.9 1.2E+02 0.0026 31.1 5.3 51 396-446 107-158 (399)
250 cd01741 GATase1_1 Subgroup of 25.6 59 0.0013 29.2 2.7 54 416-477 44-105 (188)
251 COG2441 Predicted butyrate kin 25.3 2.8E+02 0.006 26.9 7.0 57 417-474 272-337 (374)
252 TIGR01865 cas_Csn1 CRISPR-asso 24.8 59 0.0013 36.7 3.0 20 87-106 2-21 (805)
253 TIGR03723 bact_gcp putative gl 24.1 2.5E+02 0.0053 27.8 7.0 68 394-465 46-119 (314)
254 COG5026 Hexokinase [Carbohydra 23.8 6.1E+02 0.013 26.3 9.5 29 273-301 74-104 (466)
255 PF04848 Pox_A22: Poxvirus A22 23.6 1E+02 0.0022 26.7 3.6 19 87-105 2-20 (143)
256 COG2069 CdhD CO dehydrogenase/ 23.5 1.7E+02 0.0036 28.6 5.2 47 224-271 251-297 (403)
257 PF02801 Ketoacyl-synt_C: Beta 23.2 94 0.002 25.6 3.3 47 398-444 24-72 (119)
258 PRK15080 ethanolamine utilizat 23.0 2.2E+02 0.0048 27.3 6.3 53 273-325 23-76 (267)
259 PRK14828 undecaprenyl pyrophos 22.7 6.3E+02 0.014 24.2 9.1 43 387-431 155-212 (256)
260 PLN02920 pantothenate kinase 1 22.6 2.4E+02 0.0052 28.8 6.4 48 416-469 94-141 (398)
261 COG2410 Predicted nuclease (RN 22.6 1.5E+02 0.0032 26.3 4.3 31 87-117 2-33 (178)
262 cd00327 cond_enzymes Condensin 22.6 2.8E+02 0.0061 25.8 6.9 45 401-445 11-57 (254)
263 PRK14840 undecaprenyl pyrophos 21.9 7E+02 0.015 23.8 9.2 44 387-432 153-207 (250)
264 PF03630 Fumble: Fumble ; Int 21.8 72 0.0016 32.0 2.6 50 417-472 82-131 (341)
265 cd02198 YjgH_like YjgH belongs 21.2 1.6E+02 0.0034 23.9 4.2 50 394-443 31-82 (111)
266 PRK12879 3-oxoacyl-(acyl carri 20.8 2.3E+02 0.0051 27.7 6.2 52 393-447 219-270 (325)
267 PRK03011 butyrate kinase; Prov 20.5 1E+02 0.0022 31.1 3.5 25 87-111 3-27 (358)
268 PRK06840 hypothetical protein; 20.2 2E+02 0.0043 28.5 5.5 48 399-446 55-105 (339)
269 COG1069 AraB Ribulose kinase [ 20.2 90 0.002 33.0 3.0 21 86-106 3-23 (544)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-76 Score=558.51 Aligned_cols=374 Identities=38% Similarity=0.615 Sum_probs=361.0
Q ss_pred CCCceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhh
Q 036352 84 SQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHL 163 (493)
Q Consensus 84 ~~~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~ 163 (493)
..+.+|||||||||+||+++.+|+++++.|.+|+| .+||.|+|+++ ++++|+.|.++...+|++++++.||+
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNR-------ItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRL 105 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNR-------ITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRL 105 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCc-------cccceeeeccc-hhhhhhHhhcccccCcccceechHHH
Confidence 35789999999999999999999999999999999 99999999988 99999999999999999999999999
Q ss_pred hCCCCCCchhhcc---cCCeEEeCCCCceEEEeC-----CeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 036352 164 VGTVYDSSKVQTS---LYPKIVRGFKGEAWVETE-----FGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFN 235 (493)
Q Consensus 164 lg~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~-----~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~ 235 (493)
||+.++++.+|.+ +||+++. .++++.++++ .+.++|+++.+++|..|++.++.+++.++...|+|||+||+
T Consensus 106 IGr~~~d~~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFN 184 (663)
T KOG0100|consen 106 IGRKFNDKSVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFN 184 (663)
T ss_pred hCcccCChhhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcc
Confidence 9999999999998 8999886 5777777755 36899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC--CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHH
Q 036352 236 EAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR--DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLD 312 (493)
Q Consensus 236 ~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~--~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~ 312 (493)
+.|||++++|...|||+++++|+||+|||++|+++++ +.++||+|+| ||+|+|++.++++.|+++++.|+.++||++
T Consensus 185 DAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGED 264 (663)
T KOG0100|consen 185 DAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGED 264 (663)
T ss_pred hHHHhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccc
Confidence 9999999999999999999999999999999999987 8899999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHH
Q 036352 313 FDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFES 392 (493)
Q Consensus 313 id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~ 392 (493)
||+++++|+.+.++++++.++.++.++..+|+++||++|+.||++.+..++|+++++| .|++-++||..||+
T Consensus 265 FD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG--------~DfSEtLtRAkFEE 336 (663)
T KOG0100|consen 265 FDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG--------VDFSETLTRAKFEE 336 (663)
T ss_pred hHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc--------ccccchhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh-CCCCCCCCCCCChhHHHHhhHHHHHhhhc
Q 036352 393 LVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF-GKSPLKSPRGVTPDEAVVIGAAIHGEKFR 471 (493)
Q Consensus 393 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-g~~~~~~~~~~~p~~aVA~GAa~~a~~~~ 471 (493)
+--+++......++++|+.+++.+.+|+.|+||||++|+|.||++|+.+| |+.+.+ .+||++|||+|||.+|..++
T Consensus 337 lNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepsk---GinPdEAVAYGAAVQaGvls 413 (663)
T KOG0100|consen 337 LNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSK---GINPDEAVAYGAAVQAGVLS 413 (663)
T ss_pred hhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccC---CCChHHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999 899998 99999999999999999999
Q ss_pred ccCCCC
Q 036352 472 YVNRRE 477 (493)
Q Consensus 472 ~~~~~~ 477 (493)
|.....
T Consensus 414 Gee~t~ 419 (663)
T KOG0100|consen 414 GEEDTG 419 (663)
T ss_pred cccCcC
Confidence 987554
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=4.2e-66 Score=551.42 Aligned_cols=377 Identities=43% Similarity=0.677 Sum_probs=351.0
Q ss_pred CCCCceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchh
Q 036352 83 KSQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKH 162 (493)
Q Consensus 83 ~~~~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~ 162 (493)
+..+.+||||||||||+||+++++.++++.|..|.+ .+||+|+|.++ ++++|..|..+...+|.++++++||
T Consensus 24 ~~~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r-------~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KR 95 (657)
T PTZ00186 24 KVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFR-------TTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKR 95 (657)
T ss_pred cccceEEEEEeCcCeEEEEEEeCCceEEeecCCCCc-------ccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHH
Confidence 345679999999999999999999999999999999 99999999865 7899999999999999999999999
Q ss_pred hhCCCCCCchhhcc---cCCeEEeCCCCceEEEe-CCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHH
Q 036352 163 LVGTVYDSSKVQTS---LYPKIVRGFKGEAWVET-EFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQ 238 (493)
Q Consensus 163 ~lg~~~~~~~~~~~---~p~~~~~~~~g~~~~~~-~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~ 238 (493)
++|+.++++.++.. +||++..+.++.+.+.. +++.++|+++.+++|++|++.++.+++.++..+|||||++|++.|
T Consensus 96 liG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~q 175 (657)
T PTZ00186 96 LIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQ 175 (657)
T ss_pred HhccccccHHHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHH
Confidence 99999999888765 89999998888888775 468899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHH
Q 036352 239 REAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLL 316 (493)
Q Consensus 239 r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~ 316 (493)
|+++++|++.||++++++++||+|||++|+.... +.+++|||+| ||+|+||+++.++.++++++.|+..+||++||..
T Consensus 176 R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~ 255 (657)
T PTZ00186 176 RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLA 255 (657)
T ss_pred HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHH
Confidence 9999999999999999999999999999998765 7899999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHH
Q 036352 317 LVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSE 396 (493)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~ 396 (493)
|++|+..+|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+.+ ++.++.+.|||++|++++++
T Consensus 256 l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~----g~~~~~~~ItR~efe~l~~~ 331 (657)
T PTZ00186 256 LSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANAD----GAQHIQMHISRSKFEGITQR 331 (657)
T ss_pred HHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCC----CCcceEEEecHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999998887654311 22467899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 397 LIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 397 ~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+++++...++++|+.++++..+|+.|+||||+||+|.|++.|++.||..+.. ..||+++||.|||++|+.+++..
T Consensus 332 l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~---~~nPdeaVA~GAAi~a~~l~~~~ 406 (657)
T PTZ00186 332 LIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFR---GVNPDEAVALGAATLGGVLRGDV 406 (657)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccc---cCCCchHHHHhHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999988877 89999999999999999998853
No 3
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=4e-66 Score=555.75 Aligned_cols=377 Identities=43% Similarity=0.690 Sum_probs=354.0
Q ss_pred CCCceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhh
Q 036352 84 SQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHL 163 (493)
Q Consensus 84 ~~~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~ 163 (493)
.++.+||||||||||+||++.++.++++.|..|.+ .+||+|+|.+++++++|..|..+..++|.++++++|++
T Consensus 39 ~~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r-------~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Krl 111 (663)
T PTZ00400 39 ATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMR-------TTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRL 111 (663)
T ss_pred hcCcEEEEEECcccEEEEEEeCCeeEEEECCCCCc-------ccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhh
Confidence 34579999999999999999999999999999999 99999999887789999999999999999999999999
Q ss_pred hCCCCCCchhhcc---cCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 036352 164 VGTVYDSSKVQTS---LYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQRE 240 (493)
Q Consensus 164 lg~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~ 240 (493)
+|+.++++.++.. +||+++.+++|.+.+.++++.++|+++++++|++|++.++.+++.++..+|||||++|++.||+
T Consensus 112 iG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~ 191 (663)
T PTZ00400 112 IGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQ 191 (663)
T ss_pred cCCCcCcHHHHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHH
Confidence 9999999877654 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 036352 241 AIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLV 318 (493)
Q Consensus 241 ~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~ 318 (493)
++++|++.||++++++++||+|||++|+.... +.+++|+|+| ||+|+|++++.++.++++++.|+..+||++||..|+
T Consensus 192 a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 192 ATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 99999999999999999999999999998765 7899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHH
Q 036352 319 RHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELI 398 (493)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i 398 (493)
+|+..+|+++++.++..+++.+.+|+.+||++|+.||.+.+..+.++.+..+. .++.++.+.|||++|+++++|++
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~----~g~~~~~~~itR~efe~l~~~l~ 347 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQ----SGPKHLQIKLSRAKLEELTHDLL 347 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCC----CCceEEEEEECHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999998888888765431 13357899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 399 EETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 399 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+++.+.++++|+.+++.+.+|+.|+||||+|++|+|++.|++.||.++.. ..||+++||.|||++|+.+++..
T Consensus 348 ~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~---~~npdeaVA~GAAi~aa~l~~~~ 420 (663)
T PTZ00400 348 KKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSK---GVNPDEAVAMGAAIQAGVLKGEI 420 (663)
T ss_pred HHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCccc---CCCCccceeeccHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999988877 89999999999999999998853
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.3e-65 Score=550.08 Aligned_cols=375 Identities=37% Similarity=0.572 Sum_probs=348.1
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVG 165 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg 165 (493)
+.+||||||||||+||++.+|.|.++.|..|.+ .+||+|+|.+++++++|..|..+...+|.++++++||+||
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r-------~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG 74 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMR-------TTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIG 74 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCc-------cCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhC
Confidence 469999999999999999999999999999999 9999999987789999999999999999999999999999
Q ss_pred CCCCCchhh-cccCCeEEeCCCCceEEEeC--CeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 036352 166 TVYDSSKVQ-TSLYPKIVRGFKGEAWVETE--FGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAI 242 (493)
Q Consensus 166 ~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~--~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l 242 (493)
+++.+.... ..+||.+..+++|.+.+.++ ++.++|+++++++|++|++.++.+++.++..+|||||++|++.||+++
T Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~ 154 (668)
T PRK13410 75 RRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQAT 154 (668)
T ss_pred CCchhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 987653322 22899999999998888764 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 036352 243 KYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRH 320 (493)
Q Consensus 243 ~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~ 320 (493)
++|++.||++++++++||+|||++|+.... +.+++|||+| ||+|+|++++.++.++++++.++..+||++||..|++|
T Consensus 155 ~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 155 RDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred HHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHH
Confidence 999999999999999999999999998765 7899999999 99999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHH
Q 036352 321 LWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEE 400 (493)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~ 400 (493)
+..+|.++++.++..+++.+.+|+.+||++|+.||......+.++.+..+. .++.++...|||++|++++++++++
T Consensus 235 l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~----~g~~~~~~~itR~~FE~l~~~l~~r 310 (668)
T PRK13410 235 LAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATE----DGPKHIETRLDRKQFESLCGDLLDR 310 (668)
T ss_pred HHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCC----CCCeeEEEEECHHHHHHHHHHHHHH
Confidence 999999999988888999999999999999999999999999988765431 1235788999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 401 TGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 401 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+...|+++|+.+++++.+|+.|+||||+|++|+|++.|++.||..+.. ..||+++||.|||++|+.+++..
T Consensus 311 ~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~---~~npdeaVA~GAAi~aa~ls~~~ 381 (668)
T PRK13410 311 LLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQ---NVNPDEVVAVGAAIQAGILAGEL 381 (668)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCccc---CCCCchHHHHhHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999988887 89999999999999999998853
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.1e-65 Score=549.94 Aligned_cols=374 Identities=40% Similarity=0.617 Sum_probs=348.4
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVG 165 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg 165 (493)
+.+||||||||||+||++.+|.|.++.|..|++ .+||+|+|.+++++++|..|..+...+|.++++++||++|
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r-------~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG 74 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGR-------TTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIG 74 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCc-------cCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhC
Confidence 359999999999999999999999999999999 9999999987779999999999999999999999999999
Q ss_pred CCCCCchhhc-ccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 036352 166 TVYDSSKVQT-SLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKY 244 (493)
Q Consensus 166 ~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~ 244 (493)
+.++++.... .+||.++...++.+.+.++++.++|+++++++|++|++.++.+++.++..+|||||++|++.||+++++
T Consensus 75 ~~~~d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 75 RRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred CCccchhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 9988765433 389999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeccchHHHHHHhcccCC--CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 036352 245 AGDIAGLDIQGVVEDPVAAALAYGLDKR--DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHL 321 (493)
Q Consensus 245 a~~~aGl~~~~li~Ep~Aaa~~~~~~~~--~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l 321 (493)
|++.||++++++++||+|||++|+.... +.+++|||+| ||+|+|++++.++.++++++.++..+||++||..|++|+
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l 234 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWL 234 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999988653 7789999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHH
Q 036352 322 WREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEET 401 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 401 (493)
.++|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+. .++.++.+.|||++|+++++|+++++
T Consensus 235 ~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~----~~~~~~~~~itR~~fe~l~~~l~~~~ 310 (653)
T PRK13411 235 VENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADE----TGPKHLEMELTRAKFEELTKDLVEAT 310 (653)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCC----CCCeeEEEEEcHHHHHHHHHHHHHHH
Confidence 99999988888888999999999999999999999999999888765331 12367889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhC-CCCCCCCCCCChhHHHHhhHHHHHhhhccc
Q 036352 402 GAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFG-KSPLKSPRGVTPDEAVVIGAAIHGEKFRYV 473 (493)
Q Consensus 402 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg-~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 473 (493)
...++++|+.+++...+|+.|+||||+||+|+|++.|++.|| ..+.. ..||+++||.|||++|+.+++.
T Consensus 311 ~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~---~~npdeaVA~GAAi~aa~l~~~ 380 (653)
T PRK13411 311 IEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDR---SVNPDEAVALGAAIQAGVLGGE 380 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCC---CCCchHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999996 56666 8999999999999999999876
No 6
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.1e-64 Score=544.93 Aligned_cols=373 Identities=44% Similarity=0.685 Sum_probs=348.6
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVG 165 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg 165 (493)
+.+||||||||||+||++.+|.++++.|..|++ .+||+|+|.+++++++|..|..+...+|.++++++|++||
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r-------~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG 74 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGAR-------TTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMG 74 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCc-------ccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhC
Confidence 359999999999999999999999999999999 9999999987779999999999999999999999999999
Q ss_pred CCCCCchhhcc---cCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 036352 166 TVYDSSKVQTS---LYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAI 242 (493)
Q Consensus 166 ~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l 242 (493)
+. ++.++.. +||+++.+++|...+.++++.++|+++++++|++|++.++.+++.++..+|||||++|++.||+++
T Consensus 75 ~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~ 152 (627)
T PRK00290 75 RR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQAT 152 (627)
T ss_pred CC--chHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHH
Confidence 98 4444443 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 036352 243 KYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRH 320 (493)
Q Consensus 243 ~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~ 320 (493)
++|++.||++++.+++||+|||++|+.... +.++||||+| ||+|+|++++.++.++++++.++..+||++||..|++|
T Consensus 153 ~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 232 (627)
T PRK00290 153 KDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDY 232 (627)
T ss_pred HHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHH
Confidence 999999999999999999999999988764 7899999999 99999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHH
Q 036352 321 LWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEE 400 (493)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~ 400 (493)
+.++|+++++.++..+++.+.+|+.+||++|+.||......+.++.+..+. .++.++.+.|||++|++++++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~----~g~~~~~~~itR~~fe~l~~~l~~~ 308 (627)
T PRK00290 233 LADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADA----SGPKHLEIKLTRAKFEELTEDLVER 308 (627)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCC----CCCeEEEEEECHHHHHHHHHHHHHH
Confidence 999999999988888999999999999999999999999999888765431 1346788999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 401 TGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 401 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+.+.|+++|+.++++..+|+.|+|+||+|++|+|++.|++.||.++.. ..||+++||.|||++|+.+++..
T Consensus 309 ~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~---~~npdeava~GAa~~aa~l~~~~ 379 (627)
T PRK00290 309 TIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNK---GVNPDEVVAIGAAIQGGVLAGDV 379 (627)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCc---CcCChHHHHHhHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999988887 89999999999999999998853
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.8e-64 Score=543.15 Aligned_cols=377 Identities=35% Similarity=0.552 Sum_probs=348.3
Q ss_pred CCCceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhh
Q 036352 84 SQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHL 163 (493)
Q Consensus 84 ~~~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~ 163 (493)
.++.+||||||||||+||++.+|.|.++.|..|++ .+||+|+|.+++++++|..|..+...+|.++++++||+
T Consensus 37 ~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r-------~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Krl 109 (673)
T PLN03184 37 VAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQR-------TTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRF 109 (673)
T ss_pred cCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCe-------ecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHh
Confidence 35579999999999999999999999999999999 99999999877789999999999999999999999999
Q ss_pred hCCCCCCchhh-cccCCeEEeCCCCceEEEe--CCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 036352 164 VGTVYDSSKVQ-TSLYPKIVRGFKGEAWVET--EFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQRE 240 (493)
Q Consensus 164 lg~~~~~~~~~-~~~p~~~~~~~~g~~~~~~--~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~ 240 (493)
||+.+.+.... ..+||++..+++|.+.+.+ .++.++|+++++++|++|++.++.+++.++..+|||||++|++.||+
T Consensus 110 iG~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~ 189 (673)
T PLN03184 110 IGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRT 189 (673)
T ss_pred hCCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHH
Confidence 99988764322 2289999998899888875 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 036352 241 AIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLV 318 (493)
Q Consensus 241 ~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~ 318 (493)
++++|++.||++++++++||+|||++|+.... +.+++|||+| ||+|+|++++.++.++++++.++..+||++||+.|+
T Consensus 190 a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 190 ATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHH
Confidence 99999999999999999999999999998765 7899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHH
Q 036352 319 RHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELI 398 (493)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i 398 (493)
+|+..+|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+..+. .++.++.+.|||++|++++++++
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~----~g~~~~~~~itR~~fe~l~~~l~ 345 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATA----DGPKHIDTTLTRAKFEELCSDLL 345 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccC----CCCceEEEEECHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999999998887654321 12357889999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 399 EETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 399 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+++...|+++|+.+++...+|+.|+|+||+|++|+|++.|++.||..+.. ..||+++||.|||++|+.+++..
T Consensus 346 ~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~---~~npdeaVA~GAAi~aa~ls~~~ 418 (673)
T PLN03184 346 DRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNV---TVNPDEVVALGAAVQAGVLAGEV 418 (673)
T ss_pred HHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCccc---ccCcchHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999988877 89999999999999999999853
No 8
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.6e-64 Score=539.56 Aligned_cols=370 Identities=37% Similarity=0.596 Sum_probs=344.9
Q ss_pred CCceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhh
Q 036352 85 QGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLV 164 (493)
Q Consensus 85 ~~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~l 164 (493)
.+.+|||||||||++||++.++.++++.|..|++ .+||+|+|.++ ++++|+.|..+..++|.++++++||+|
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r-------~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~Krli 74 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNR-------TTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLI 74 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCc-------cCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHh
Confidence 4569999999999999999999999999999999 99999999855 789999999999999999999999999
Q ss_pred CCCCCCchhhcc---cCCeEEeCCCCceEEEeC----CeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHH
Q 036352 165 GTVYDSSKVQTS---LYPKIVRGFKGEAWVETE----FGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEA 237 (493)
Q Consensus 165 g~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~----~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~ 237 (493)
|+.++++.++.. +||.+..+.++.+.+.+. ++.++|+++++++|++|++.++.+++.++..+|||||++|++.
T Consensus 75 G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~ 154 (653)
T PTZ00009 75 GRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDS 154 (653)
T ss_pred CCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHH
Confidence 999999887765 899998888887776643 3689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC---CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 036352 238 QREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR---DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDF 313 (493)
Q Consensus 238 ~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~---~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~i 313 (493)
||+++++|++.||++++++++||+|||++|+.... +.+++|||+| ||+|+||+++.++.++++++.++..+||++|
T Consensus 155 qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~ 234 (653)
T PTZ00009 155 QRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDF 234 (653)
T ss_pred HHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHH
Confidence 99999999999999999999999999999987653 6789999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHH
Q 036352 314 DLLLVRHLWREFTRCH-AFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFES 392 (493)
Q Consensus 314 d~~l~~~l~~~~~~~~-~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~ 392 (493)
|..|++|+..+|++++ +.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.++ .++.++|||++|++
T Consensus 235 D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~--------~d~~~~itR~~fe~ 306 (653)
T PTZ00009 235 DNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG--------IDYNVTISRARFEE 306 (653)
T ss_pred HHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC--------ceEEEEECHHHHHH
Confidence 9999999999998776 46777889999999999999999999999999999888776 78899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhC-CCCCCCCCCCChhHHHHhhHHHHHhhhc
Q 036352 393 LVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFG-KSPLKSPRGVTPDEAVVIGAAIHGEKFR 471 (493)
Q Consensus 393 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg-~~~~~~~~~~~p~~aVA~GAa~~a~~~~ 471 (493)
+++++++++.+.|+++|+.++++..+|+.|+|+||+||+|+|++.|++.|+ ..+.. ..||+++||.|||++|+.++
T Consensus 307 l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~---~~npdeaVA~GAa~~aa~ls 383 (653)
T PTZ00009 307 LCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCK---SINPDEAVAYGAAVQAAILT 383 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCC---CCCcchHHhhhhhhhHHHhc
Confidence 999999999999999999999999999999999999999999999999996 56666 89999999999999999998
Q ss_pred cc
Q 036352 472 YV 473 (493)
Q Consensus 472 ~~ 473 (493)
+.
T Consensus 384 ~~ 385 (653)
T PTZ00009 384 GE 385 (653)
T ss_pred CC
Confidence 75
No 9
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=9.8e-64 Score=535.86 Aligned_cols=371 Identities=42% Similarity=0.649 Sum_probs=344.5
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhCCC
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTV 167 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 167 (493)
+||||||||||+||++.+|.+.++.|..|++ .+||+|+|.+++++++|..|..+...+|.++++++|++||+.
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~-------~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~ 74 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGAR-------TTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRR 74 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCc-------ccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCC
Confidence 8999999999999999999999999999999 999999999888999999999999999999999999999998
Q ss_pred CCCchh-hcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 036352 168 YDSSKV-QTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYAG 246 (493)
Q Consensus 168 ~~~~~~-~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a~ 246 (493)
+.+... ...+||. +..++|.+.+.++++.++|+++++++|++|++.++.+++.++..+|||||++|++.||+++++|+
T Consensus 75 ~~~~~~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 75 FDEVTEEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred chHHHHHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 743221 1238898 66678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeccchHHHHHHhcccC-C-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 036352 247 DIAGLDIQGVVEDPVAAALAYGLDK-R-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWR 323 (493)
Q Consensus 247 ~~aGl~~~~li~Ep~Aaa~~~~~~~-~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~ 323 (493)
+.||++++.+++||+|||++|+... . +.+++|||+| ||+|+|++++.++.++++++.++..+||++||+.|++|+..
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 9999999999999999999998875 3 8899999999 99999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHH
Q 036352 324 EFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGA 403 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~ 403 (493)
+|.++++.++..+++.+.+|+.+||++|+.||......+.++.+..+. .++.++.+.|||++|+++++|+++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~----~g~~~~~~~itr~~fe~l~~~l~~~~~~ 309 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADA----SGPKHLEMTLTRAKFEELTADLVERTKE 309 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCC----CCCeeEEEEEeHHHHHHHHHHHHHHHHH
Confidence 999999988888999999999999999999999999999888765431 1236788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhccc
Q 036352 404 ICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYV 473 (493)
Q Consensus 404 ~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 473 (493)
.++++|+.+++++.+|+.|+|+||+|++|+|++.|++.||.++.. ..||+++||.|||++|+.+++.
T Consensus 310 ~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~---~~~pdeava~GAa~~aa~l~~~ 376 (595)
T TIGR02350 310 PVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNK---SVNPDEVVAIGAAIQGGVLKGD 376 (595)
T ss_pred HHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccC---CcCcHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999988877 8999999999999999999886
No 10
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.2e-63 Score=531.90 Aligned_cols=365 Identities=35% Similarity=0.546 Sum_probs=340.5
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhCCC
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTV 167 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 167 (493)
+||||||||||+||++.+|.++++.|..|.+ .+||+|+|.+++++++|..|..+...+|.++++++||++|+.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~-------~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~ 73 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRV-------LLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRS 73 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCc-------ccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCC
Confidence 5899999999999999999999999999999 999999999888999999999999999999999999999998
Q ss_pred CCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 036352 168 YDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYAGD 247 (493)
Q Consensus 168 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a~~ 247 (493)
+.+......+||.+....+|.+.+.+.+..++|+++.+++|++|++.++.+++.++..+|||||++|++.||+++++|++
T Consensus 74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 74 IEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred ccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 77654434489999888889999998877899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q 036352 248 IAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREF 325 (493)
Q Consensus 248 ~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~ 325 (493)
.||++++++++||+|||++|+.... +.+++|||+| ||+|+|++++.++.++++++.++..+||++||+.|++++.++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~- 232 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ- 232 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh-
Confidence 9999999999999999999998765 7899999999 999999999999999999999999999999999999999976
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHH
Q 036352 326 TRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAIC 405 (493)
Q Consensus 326 ~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i 405 (493)
++.+...+++.+.+|+.+||++|+.||......+.++. ++ .++.++|||++|+++++|+++++.+.+
T Consensus 233 ---~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g--------~~~~~~itr~efe~l~~~ll~~i~~~i 299 (599)
T TIGR01991 233 ---LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DG--------KDFKGKLTRDEFEALIQPLVQKTLSIC 299 (599)
T ss_pred ---hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CC--------cEEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 56666678899999999999999999999888888864 44 778999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCCC
Q 036352 406 QKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNRR 476 (493)
Q Consensus 406 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~ 476 (493)
+++|+.+++.+.+|+.|+||||+|++|+|++.|++.||..+.. ..||+++||.|||++|+.+++.++.
T Consensus 300 ~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~---~~npdeaVA~GAai~a~~l~~~~~~ 367 (599)
T TIGR01991 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLT---DIDPDQVVALGAAIQADLLAGNRIG 367 (599)
T ss_pred HHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCC---CCCCcHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999988887 8999999999999999999987653
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.1e-63 Score=531.11 Aligned_cols=375 Identities=38% Similarity=0.594 Sum_probs=346.2
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVG 165 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg 165 (493)
+.+||||||||||+||++.+|.|.++.|..|.+ .+||+|+|.+++++++|..|..+...+|.++++++|+++|
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r-------~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG 74 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFR-------TTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIG 74 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCc-------ccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcC
Confidence 369999999999999999999999999999999 9999999988788999999999999999999999999999
Q ss_pred CCCCCchhhc-ccCCeEEeCCCCceEEEe--CCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 036352 166 TVYDSSKVQT-SLYPKIVRGFKGEAWVET--EFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAI 242 (493)
Q Consensus 166 ~~~~~~~~~~-~~p~~~~~~~~g~~~~~~--~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l 242 (493)
+.+++..... .+||.+..+++|.+.+.+ ++..++|+++.+++|++|++.++.+++.++..+|||||++|++.||+++
T Consensus 75 ~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~ 154 (621)
T CHL00094 75 RKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQAT 154 (621)
T ss_pred CChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 9876533222 279999988888888775 4778999999999999999999999999899999999999999999999
Q ss_pred HHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 036352 243 KYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRH 320 (493)
Q Consensus 243 ~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~ 320 (493)
++|++.||++++++++||+|||++|+.... +..++|+|+| ||+|+|++++.++.++++++.++..+||++||..|++|
T Consensus 155 ~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 234 (621)
T CHL00094 155 KDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNW 234 (621)
T ss_pred HHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHH
Confidence 999999999999999999999999998765 7789999999 99999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHH
Q 036352 321 LWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEE 400 (493)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~ 400 (493)
+.++|+++++.++..+++.+.+|+.+||++|+.||......+.++.+..+. .++.++...|+|++|++++++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~----~g~~~~~~~itR~~fe~l~~~l~~~ 310 (621)
T CHL00094 235 LIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQ----TGPKHIEKTLTRAKFEELCSDLINR 310 (621)
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCC----CCCeeEEEEEcHHHHHHHHHHHHHH
Confidence 999999999999888999999999999999999999998888888765321 1235788899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 401 TGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 401 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+...|+++|+.+++...+|+.|+|+||+|++|+|++.|++.||.++.. ..||+++||.|||++|+.+++..
T Consensus 311 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~---~~~pdeava~GAA~~aa~ls~~~ 381 (621)
T CHL00094 311 CRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQ---SVNPDEVVAIGAAVQAGVLAGEV 381 (621)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCc---CCCchhHHHhhhHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999988877 89999999999999999998853
No 12
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-64 Score=494.68 Aligned_cols=381 Identities=45% Similarity=0.703 Sum_probs=369.0
Q ss_pred CCCCceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchh
Q 036352 83 KSQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKH 162 (493)
Q Consensus 83 ~~~~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~ 162 (493)
.....++|||+||||||++++.+++|+++.|.+|.| .+||+++|+.+|++++|..|..+...+|++++..-|+
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqr-------tTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKr 96 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQR-------TTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKR 96 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccc-------cCCceEEEeccccEEecchhhhhhccCCCceEEEehh
Confidence 667789999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhCCCCCCchhhcc---cCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHH
Q 036352 163 LVGTVYDSSKVQTS---LYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQR 239 (493)
Q Consensus 163 ~lg~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r 239 (493)
++|+.++++.+|.+ .||++++..+|.++++..|+.++|.++.++.|.+++++++.+++......|+|||+||++.||
T Consensus 97 ligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqR 176 (640)
T KOG0102|consen 97 LIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQR 176 (640)
T ss_pred hhhhhccCHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHH
Confidence 99999999999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHH
Q 036352 240 EAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLL 317 (493)
Q Consensus 240 ~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l 317 (493)
+++++|.+.+|++++++++||+|||++|+++.+ ++.++|+|+| ||+|++++.+.++.++++++.++..+||++||..+
T Consensus 177 qaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~ 256 (640)
T KOG0102|consen 177 QATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNAL 256 (640)
T ss_pred HHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHH
Confidence 999999999999999999999999999999987 7899999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHH
Q 036352 318 VRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSEL 397 (493)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~ 397 (493)
.+++...|++..++++..+..+++||++++|++|..||+..+.++.+|++..+. .||..+.+++||.+|++++.++
T Consensus 257 ~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada----~gpkh~~i~~tr~efe~~v~~l 332 (640)
T KOG0102|consen 257 VRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADA----SGPKHLNIELTRGEFEELVPSL 332 (640)
T ss_pred HHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccC----CCCeeEEEeecHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999999999887763 4789999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCCCC
Q 036352 398 IEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNRRE 477 (493)
Q Consensus 398 i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~ 477 (493)
+++.+..++++|+.+++...+|+.|+|+||++|+|.+++.+++.||..+.. ..||+++||.|||+++..++|+.+-.
T Consensus 333 I~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~---~vnPdeava~GAaiqggvl~geVkdv 409 (640)
T KOG0102|consen 333 IARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSK---GVNPDEAVAGGAAIQGGVLSGEVKDV 409 (640)
T ss_pred HHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCC---CcCCcchhccchhhccchhhccccce
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999987543
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5.7e-62 Score=520.16 Aligned_cols=362 Identities=35% Similarity=0.515 Sum_probs=332.8
Q ss_pred CCceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhh
Q 036352 85 QGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLV 164 (493)
Q Consensus 85 ~~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~l 164 (493)
...+||||||||||+||++.+|.++++.|..|++ .+||+|+|.++ .++||..|..+...+|.++++++|+++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~-------~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~Krli 89 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRV-------LLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFM 89 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCe-------ecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHh
Confidence 3469999999999999999999999999999999 99999999877 599999999999999999999999999
Q ss_pred CCCCCCchhh-cccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 036352 165 GTVYDSSKVQ-TSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIK 243 (493)
Q Consensus 165 g~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~ 243 (493)
|+.+.+.... ..+||.+...++|.+.+.+++..++|+++.+++|++|++.++.+++.++..+|||||++|++.||++++
T Consensus 90 G~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 169 (616)
T PRK05183 90 GRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATK 169 (616)
T ss_pred CCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 9988764322 237899888888999998887789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 036352 244 YAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHL 321 (493)
Q Consensus 244 ~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l 321 (493)
+|++.||++++++++||+|||++|+.... +.+++|||+| ||+|+|++++.++.++++++.++..+||++||..|++|+
T Consensus 170 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~ 249 (616)
T PRK05183 170 DAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI 249 (616)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999998765 7899999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHH
Q 036352 322 WREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEET 401 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 401 (493)
.+++ +.+...+++.+.+|+.+||++|+.||....+.+.++.. ...|||++|+++++|+++++
T Consensus 250 ~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~--------------~~~itr~efe~l~~~l~~~~ 311 (616)
T PRK05183 250 LEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW--------------QGEITREQFNALIAPLVKRT 311 (616)
T ss_pred HHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC--------------CCeEcHHHHHHHHHHHHHHH
Confidence 9874 45555688899999999999999999998888877421 12499999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCC
Q 036352 402 GAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNR 475 (493)
Q Consensus 402 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~ 475 (493)
.+.++++|+++++...+|+.|+|+||+|++|+|++.|++.||..+.. ..||+++||.|||++|+.+++...
T Consensus 312 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~---~~npdeaVA~GAAi~a~~l~~~~~ 382 (616)
T PRK05183 312 LLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLT---SIDPDKVVAIGAAIQADILAGNKP 382 (616)
T ss_pred HHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCc---CCCchHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999988877 899999999999999999998754
No 14
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.2e-61 Score=523.98 Aligned_cols=375 Identities=38% Similarity=0.588 Sum_probs=337.4
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhCCC
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTV 167 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 167 (493)
||||||||+|++||++.++.++++.|..|+| ++||+|+|.++ ++.+|..|.....++|.+++.++|++||+.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~-------~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~ 72 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKR-------KTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRK 72 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-S-------SEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSB
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccc-------cccceeeEeee-cccCCcchhhhccccccccccccccccccc
Confidence 6999999999999999999999999999999 99999999977 899999999999999999999999999999
Q ss_pred CCCchhhcc---cCCeEEeCCCCceEEEeC--Ce--EeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 036352 168 YDSSKVQTS---LYPKIVRGFKGEAWVETE--FG--IFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQRE 240 (493)
Q Consensus 168 ~~~~~~~~~---~p~~~~~~~~g~~~~~~~--~~--~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~ 240 (493)
++++.++.. +||.+..+++|.+.+++. +. .++|+++++++|++|++.++.+++..+..+|||||++|++.||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~ 152 (602)
T PF00012_consen 73 FDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQ 152 (602)
T ss_dssp TTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHH
T ss_pred ccccccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhh
Confidence 998877765 899999988999888765 54 89999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHcCCCeeeeccchHHHHHHhcccCC--CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHH
Q 036352 241 AIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR--DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLL 317 (493)
Q Consensus 241 ~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~--~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l 317 (493)
++++|++.||++++.+++||+|||++|+.... ++++||||+| ||+|++++++.++.++++++.++..+||.+||..|
T Consensus 153 ~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l 232 (602)
T PF00012_consen 153 ALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEAL 232 (602)
T ss_dssp HHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHH
T ss_pred cccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceeccee
Confidence 99999999999999999999999999987765 6899999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCC--CCceEEEEecccc-hhhhccccccceEEEEcHHHHHHHH
Q 036352 318 VRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSS--EPQVEVKLHNLLN-IQVKKSLVQKDLEVTITRSEFESLV 394 (493)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~--~~~~~~~i~~~~~-~~~~~~~~~~~~~~~itr~~~e~~~ 394 (493)
++++.++++++++.++..+++.+.+|+.+||++|+.||. ..+..+.++.+.+ + .++.+.|+|++|++++
T Consensus 233 ~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~--------~~~~~~itr~~fe~l~ 304 (602)
T PF00012_consen 233 AEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDG--------EDFSITITREEFEELC 304 (602)
T ss_dssp HHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTT--------EEEEEEEEHHHHHHHT
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------cccccccccceecccc
Confidence 999999999999999888999999999999999999999 5566667766665 4 7889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 395 SELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 395 ~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+|+++++.+.|+++|+.++.+..+|+.|+|+||+|++|+|++.|++.|+..+.. +.||+++||.|||++|+.+++.+
T Consensus 305 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~---~~~p~~aVA~GAa~~a~~~~~~~ 381 (602)
T PF00012_consen 305 EPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISK---SVNPDEAVARGAALYAAILSGSF 381 (602)
T ss_dssp HHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB----SS-TTTHHHHHHHHHHHHHHTSC
T ss_pred cccccccccccccccccccccccccceeEEecCcccchhhhhhhhhcccccccc---ccccccccccccccchhhhcccc
Confidence 999999999999999999999899999999999999999999999999977777 89999999999999999999987
Q ss_pred CCCCCCC
Q 036352 475 RREPPNE 481 (493)
Q Consensus 475 ~~~~~~~ 481 (493)
+..+...
T Consensus 382 ~~~~~~~ 388 (602)
T PF00012_consen 382 RVKDIKI 388 (602)
T ss_dssp SSTSSCE
T ss_pred ccccccc
Confidence 7776543
No 15
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-61 Score=503.48 Aligned_cols=355 Identities=42% Similarity=0.604 Sum_probs=336.7
Q ss_pred CceEEEEcCCccEEEEEEeCC-ceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhh
Q 036352 86 GNVLGIDLGTTYSRVAVMQGE-DPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLV 164 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~-~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~l 164 (493)
+.+||||||||||+||+++++ .+.++.|..|.+ .+||+++|..++++++|..|..++..+|.+++..+|+.+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r-------~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~ 77 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGER-------LTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKI 77 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCc-------ccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhc
Confidence 469999999999999999988 799999999999 999999999887899999999999999999999999999
Q ss_pred CCCCCCchhhcccCCeEEeCCCCc-eEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 036352 165 GTVYDSSKVQTSLYPKIVRGFKGE-AWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIK 243 (493)
Q Consensus 165 g~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~ 243 (493)
|... ++. ..+.++++.++|+++.+++|.+|++.++.+++..+..+|||||+||++.||++++
T Consensus 78 G~~~-----------------~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 78 GRGS-----------------NGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred CCCC-----------------CCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 9751 122 3466777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 036352 244 YAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHL 321 (493)
Q Consensus 244 ~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l 321 (493)
+|++.||++++++++||+|||++|+.+.. +..|+|||+| ||||+|++++.++.++++++.++..+||++||..|.+|+
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~ 220 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYL 220 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHH
Confidence 99999999999999999999999999986 8899999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHH
Q 036352 322 WREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEET 401 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 401 (493)
..+|+.++++++..++..++||+.+||++|+.||...+..+.+++...+ .++...|+|++||+++.+++.++
T Consensus 221 ~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~--------~~~~~~ltR~~~E~l~~dll~r~ 292 (579)
T COG0443 221 VMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD--------IDLLKELTRAKFEELILDLLERT 292 (579)
T ss_pred HHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc--------chhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876655 67889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCC
Q 036352 402 GAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNR 475 (493)
Q Consensus 402 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~ 475 (493)
...+.+++..++++..+|+.|+|+||++|||.|++.+++.||..+.. ..||+++||.|||++|..+++..+
T Consensus 293 ~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~---~inpdeava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEK---SINPDEAVALGAAIQAAVLSGEVP 363 (579)
T ss_pred HHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccc---cCCccHHHHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999988888 999999999999999999999875
No 16
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-59 Score=475.26 Aligned_cols=376 Identities=36% Similarity=0.577 Sum_probs=356.2
Q ss_pred CCCCceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchh
Q 036352 83 KSQGNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKH 162 (493)
Q Consensus 83 ~~~~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~ 162 (493)
+..+.+||||||||+++|+++.++..+++.|..|++ .+||+++|.++ +.++|..|..+...+|.+++.++|+
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~r-------ttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~kr 75 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNR-------TTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKR 75 (620)
T ss_pred ccccceeeEeccCccceeeeEcCCcceeeeccccCc-------cccceeeeccc-ccchhhhhhhhhhcCCcceeeehhh
Confidence 345679999999999999999999999999999999 99999999977 8999999999999999999999999
Q ss_pred hhCCCCCCchhhcc---cCCeEEeCCCCceEEEeC----CeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 036352 163 LVGTVYDSSKVQTS---LYPKIVRGFKGEAWVETE----FGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFN 235 (493)
Q Consensus 163 ~lg~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~----~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~ 235 (493)
++|+.++++.++.+ +||.+..+.++.+.+++. .+.+.|+++..+.|..++..++.+++..+..+|+|||++|+
T Consensus 76 liGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~ 155 (620)
T KOG0101|consen 76 LIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFN 155 (620)
T ss_pred hcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcC
Confidence 99999999999987 999999777788888766 36788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC---CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchH
Q 036352 236 EAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR---DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGL 311 (493)
Q Consensus 236 ~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~---~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~ 311 (493)
+.||+++.+|+..||++++++++||+||+++|++.++ ..+|+|+|+| ||+|++++.+.++.+.++++.++.++||+
T Consensus 156 ~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGe 235 (620)
T KOG0101|consen 156 DSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGE 235 (620)
T ss_pred HHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccch
Confidence 9999999999999999999999999999999998876 7789999999 99999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHH
Q 036352 312 DFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFE 391 (493)
Q Consensus 312 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e 391 (493)
+||+.|.+|+..+|+++++.++..+++..+||+.+||.+|+.||+...+++.+++++++ .++...++|.+|+
T Consensus 236 df~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g--------~d~~~~itrarfe 307 (620)
T KOG0101|consen 236 DFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG--------IDFYTSITRARFE 307 (620)
T ss_pred hhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc--------ccccceeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh-CCCCCCCCCCCChhHHHHhhHHHHHhhh
Q 036352 392 SLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF-GKSPLKSPRGVTPDEAVVIGAAIHGEKF 470 (493)
Q Consensus 392 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-g~~~~~~~~~~~p~~aVA~GAa~~a~~~ 470 (493)
+++.+++..+...+.++|+++.+++.+|+.|+||||++++|.++..++++| ++.... +.||+++||+|||++|+.+
T Consensus 308 ~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~---sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 308 ELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNK---SINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhccccccc---CCCHHHHHHhhHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999 555555 9999999999999999999
Q ss_pred cccCCCC
Q 036352 471 RYVNRRE 477 (493)
Q Consensus 471 ~~~~~~~ 477 (493)
.|.....
T Consensus 385 ~g~~~~~ 391 (620)
T KOG0101|consen 385 SGDKSLN 391 (620)
T ss_pred cCCcccc
Confidence 9876444
No 17
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-58 Score=465.26 Aligned_cols=381 Identities=29% Similarity=0.436 Sum_probs=365.6
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhCCC
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGTV 167 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 167 (493)
++|||||..++.+|+.+.+..++|.|..++| .+|++++|.++ ++++|..|..+...++.+++..+||++|++
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr-------~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~ 74 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNR-------ETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRK 74 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccc-------cCcceeeeccc-cceeeeccccceeecccccchhhhhhhccc
Confidence 9999999999999999999999999999999 99999999877 899999999999999999999999999999
Q ss_pred CCCchhhcc---cCCeEEeCCCCceEEEeC----CeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 036352 168 YDSSKVQTS---LYPKIVRGFKGEAWVETE----FGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQRE 240 (493)
Q Consensus 168 ~~~~~~~~~---~p~~~~~~~~g~~~~~~~----~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~ 240 (493)
+.+|.+|.. +|+.++.++||.+.+.++ .+.+++++++++||.+++..++..+..++..+||+||+||++.||+
T Consensus 75 f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRr 154 (727)
T KOG0103|consen 75 FSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRR 154 (727)
T ss_pred cCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHH
Confidence 999999987 899999999999999877 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeeccchHHHHHHhcccCC--------CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchH
Q 036352 241 AIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR--------DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGL 311 (493)
Q Consensus 241 ~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~--------~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~ 311 (493)
++.+|++.|||+++++++|.+|+|++|+..+. +.+|+++|+| +.+.+++..+..|.++++++.++..+||.
T Consensus 155 avldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr 234 (727)
T KOG0103|consen 155 AVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGR 234 (727)
T ss_pred HHHhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccc
Confidence 99999999999999999999999999998764 5689999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHH
Q 036352 312 DFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFE 391 (493)
Q Consensus 312 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e 391 (493)
+||+.|.+|+..+|+.+|++++..++++..||+..||+.|+.||.+...+.+|++++++ .|.+..|+|++|+
T Consensus 235 ~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d--------~dvs~~i~ReEfE 306 (727)
T KOG0103|consen 235 DFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND--------KDVSSKIKREEFE 306 (727)
T ss_pred hHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec--------chhhhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988 8889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhc
Q 036352 392 SLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFR 471 (493)
Q Consensus 392 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~ 471 (493)
+++.|+++++...+..+|+++++...+|+.|.++||+||+|.|.+.|...||+...+ +.|.++|||+|||++.++++
T Consensus 307 el~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~---TlN~dEavarG~ALqcAIlS 383 (727)
T KOG0103|consen 307 ELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSR---TLNQDEAVARGAALQCAILS 383 (727)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccc---cccHHHHHHHhHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ccCCCCCCCCCCcccc
Q 036352 472 YVNRREPPNEGALYRS 487 (493)
Q Consensus 472 ~~~~~~~~~~~~~~~~ 487 (493)
..+++++......+-+
T Consensus 384 P~frVRef~v~Di~py 399 (727)
T KOG0103|consen 384 PTFRVREFSVEDIVPY 399 (727)
T ss_pred ccccceecceecccce
Confidence 9999997666655433
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=7.1e-57 Score=476.81 Aligned_cols=338 Identities=31% Similarity=0.475 Sum_probs=294.9
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVG 165 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg 165 (493)
..+||||||||||+||++.+|.++++.|..|++ .+||+|+|.++ +++||..| +++++||++|
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~-------~tPS~V~f~~~-~~~vG~~A----------ti~~~KrliG 80 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKE-------LIPTTIDFTSN-NFTIGNNK----------GLRSIKRLFG 80 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCe-------ecCeEEEEcCC-CEEECchh----------hHHHHHHHhC
Confidence 459999999999999999999999999999999 99999999865 58999987 7899999999
Q ss_pred CCCCCchhhcc---cCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 036352 166 TVYDSSKVQTS---LYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAI 242 (493)
Q Consensus 166 ~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l 242 (493)
+.+++...... .........++...+.++++.++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++
T Consensus 81 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 81 KTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred CCchhhccchhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 98765221111 111122223455667788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 036352 243 KYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRH 320 (493)
Q Consensus 243 ~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~ 320 (493)
++|++.||++++++++||+|||++|+.... .+.++|+|+| ||+|+|++++.++.++++++.|+..+||++||..|++|
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~ 240 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQY 240 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHH
Confidence 999999999999999999999999998765 6789999999 99999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHH
Q 036352 321 LWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEE 400 (493)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~ 400 (493)
+..++. ...+. +.++.||++|+.||....... ..++|||++|+++++|++++
T Consensus 241 ~~~~~~------~~~~~----~~~~~~ekaK~~LS~~~~~~~------------------~~~~itr~efe~l~~~l~~~ 292 (595)
T PRK01433 241 LCNKFD------LPNSI----DTLQLAKKAKETLTYKDSFNN------------------DNISINKQTLEQLILPLVER 292 (595)
T ss_pred HHHhcC------CCCCH----HHHHHHHHHHHhcCCCccccc------------------ceEEEcHHHHHHHHHHHHHH
Confidence 998852 12222 223469999999987664211 16799999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 401 TGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 401 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+...++++|+.++ ..+|+.|+|+||+|++|+|++.|++.||.++.. +.||+++||.|||++|+.+++..
T Consensus 293 ~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~---~~npdeaVA~GAAi~a~~l~~~~ 361 (595)
T PRK01433 293 TINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS---DIDPDKAVVWGAALQAENLIAPH 361 (595)
T ss_pred HHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCcee---cCCchHHHHHHHHHHHHHhhCCc
Confidence 9999999999998 568999999999999999999999999988887 89999999999999999987753
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-54 Score=434.57 Aligned_cols=390 Identities=28% Similarity=0.433 Sum_probs=356.1
Q ss_pred CCCCceEEEEcCCccEEEEEEeCCce-EEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcch
Q 036352 83 KSQGNVLGIDLGTTYSRVAVMQGEDP-VVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTK 161 (493)
Q Consensus 83 ~~~~~ivGIDlGTt~s~va~~~~~~~-~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k 161 (493)
.....+++||+||.+++||++.+|-| +++.|...+| ++|++|+|. +|+|+||..|.....++|..++.+++
T Consensus 19 ~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrR-------Ktp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~ 90 (902)
T KOG0104|consen 19 SSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRR-------KTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLK 90 (902)
T ss_pred cchhhheeeecccceeEEEEecCCCCeEEeechhhcc-------cCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHH
Confidence 34456999999999999999999987 8999999999 999999997 55999999999999999999999999
Q ss_pred hhhCCCCCCchhhcc----cCCeEEeCC-CCceEEEeCC-eEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 036352 162 HLVGTVYDSSKVQTS----LYPKIVRGF-KGEAWVETEF-GIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFN 235 (493)
Q Consensus 162 ~~lg~~~~~~~~~~~----~p~~~~~~~-~g~~~~~~~~-~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~ 235 (493)
.++|+..+++.++.. .+|+++.++ .+.+.|.+++ ..++++++++|+|.+.+..++.+...++.++|||||.+|+
T Consensus 91 ~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~ 170 (902)
T KOG0104|consen 91 DLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFN 170 (902)
T ss_pred HHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccC
Confidence 999999999865543 456777775 6778899887 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC------CCeEEEEEeC-CeeEEEEEEEe----------CCeEE
Q 036352 236 EAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR------DGLFAVYSFG-GTFEFSILEIS----------NGVIK 298 (493)
Q Consensus 236 ~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~------~~~vlVvDiG-gTtdvsv~~~~----------~~~~~ 298 (493)
+.+|+++.+|+++||++++.+|++-.|+|+.|+..+. ..+++|+|+| |.|..+++.+. ...++
T Consensus 171 qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~ 250 (902)
T KOG0104|consen 171 QAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQ 250 (902)
T ss_pred HHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEE
Confidence 9999999999999999999999999999999999863 7799999999 99999998875 14689
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHhhhccC--CCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccc
Q 036352 299 VKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAF--DASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSL 376 (493)
Q Consensus 299 vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~--~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~ 376 (493)
++++..+..+||..|+.+|.+||...|.++++. ++..+++++.+|..+++++|..||.+.++...|+.+.++
T Consensus 251 ~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd------ 324 (902)
T KOG0104|consen 251 VLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD------ 324 (902)
T ss_pred EEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc------
Confidence 999999999999999999999999999988765 577889999999999999999999999999999999998
Q ss_pred cccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCC-CCCCCCCCCh
Q 036352 377 VQKDLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKS-PLKSPRGVTP 455 (493)
Q Consensus 377 ~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~-~~~~~~~~~p 455 (493)
.|+...|||++|+++|.+++.++...|+++|..++++..+|+.|+|.||++|+|.||+.|.+..|.. +.. ..|.
T Consensus 325 --iDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~k---nlNa 399 (902)
T KOG0104|consen 325 --IDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGK---NLNA 399 (902)
T ss_pred --cccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhc---ccCh
Confidence 8999999999999999999999999999999999999999999999999999999999999999754 444 8999
Q ss_pred hHHHHhhHHHHHhhhcccCCCCCCCCC--Ccccccccc
Q 036352 456 DEAVVIGAAIHGEKFRYVNRREPPNEG--ALYRSREEF 491 (493)
Q Consensus 456 ~~aVA~GAa~~a~~~~~~~~~~~~~~~--~~~~~~~~~ 491 (493)
++|++.||+++|+.|+..++++|..+. .+|-+.-+|
T Consensus 400 DEA~vmGav~~aA~LSksFKvKpf~V~D~~~yp~~v~f 437 (902)
T KOG0104|consen 400 DEAAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVEF 437 (902)
T ss_pred hHHHHHHHHHHHHhhcccccccceeeeecccccEEEEe
Confidence 999999999999999999999995543 355554444
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.1e-52 Score=430.24 Aligned_cols=336 Identities=22% Similarity=0.289 Sum_probs=287.2
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEc---------------------------------
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFK--------------------------------- 134 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~--------------------------------- 134 (493)
++|||||||||+||++++|.|+++++..|.+ .+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~-------~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDST-------YLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYN 74 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCC-------cCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhc
Confidence 7999999999999999999999999999988 999999995
Q ss_pred -------cCCcceecHhHhhhhhcCcCch--hhcchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHH
Q 036352 135 -------PNGESWVGRQANMMTSLYPSRA--LFDTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQA 205 (493)
Q Consensus 135 -------~~~~~~~G~~A~~~~~~~~~~~--~~~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~ 205 (493)
++++.++|.+|..++..+|+++ +..+|+++|...-.+ +....++++++
T Consensus 75 ~~~~~~~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~-----------------------~~~~~~e~l~a 131 (450)
T PRK11678 75 REEDIDVTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP-----------------------QQVALFEDLVC 131 (450)
T ss_pred ccccccccccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc-----------------------cceeCHHHHHH
Confidence 3557799999999999999888 779999999642110 11345899999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeE
Q 036352 206 FILAKMRAIGEVYLKESATKAVISVPACFN-----EAQREA---IKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLF 276 (493)
Q Consensus 206 ~~L~~l~~~~~~~~~~~~~~vvitVP~~~~-----~~~r~~---l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~v 276 (493)
.+|++|++.++.+++.++..+|||||++|+ +.+|++ |++|++.||++++.+++||+|||++|+...+ +..+
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~v 211 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRV 211 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeE
Confidence 999999999999999999999999999998 677665 7999999999999999999999999987654 7899
Q ss_pred EEEEeC-CeeEEEEEEEeCC-------eEEEEEecCCCCCchHHHHHHHH-HHHHHHHhh----hccCCC----------
Q 036352 277 AVYSFG-GTFEFSILEISNG-------VIKVKAKRKSLSHGGLDFDLLLV-RHLWREFTR----CHAFDA---------- 333 (493)
Q Consensus 277 lVvDiG-gTtdvsv~~~~~~-------~~~vl~~~~~~~~GG~~id~~l~-~~l~~~~~~----~~~~~~---------- 333 (493)
||+|+| ||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|.+ +.+.++
T Consensus 212 lV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~ 290 (450)
T PRK11678 212 LVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVA 290 (450)
T ss_pred EEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhh
Confidence 999999 9999999999754 368899888 6899999999997 677777642 111110
Q ss_pred -------------------------CCCHHHH------------HHHHHHHHHHHHHcCCCCceEEEEecccchhhhccc
Q 036352 334 -------------------------SHYPLVL------------QRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSL 376 (493)
Q Consensus 334 -------------------------~~~~~~~------------~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~ 376 (493)
..+++.. .+|+.+||++|+.||..+++++.++.+.
T Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~-------- 362 (450)
T PRK11678 291 INDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS-------- 362 (450)
T ss_pred hhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--------
Confidence 0122222 3688999999999999999998887543
Q ss_pred cccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChh
Q 036352 377 VQKDLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPD 456 (493)
Q Consensus 377 ~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~ 456 (493)
.++...|+|++|++++++.++++.++++++|+.++.. ++.|+||||+|++|+|++.+++.||..... ..+|.
T Consensus 363 --~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~---~g~~~ 434 (450)
T PRK11678 363 --DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV---GGDDF 434 (450)
T ss_pred --CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE---eCCCc
Confidence 3467899999999999999999999999999999865 589999999999999999999999876666 68999
Q ss_pred HHHHhhHHHHHhhh
Q 036352 457 EAVVIGAAIHGEKF 470 (493)
Q Consensus 457 ~aVA~GAa~~a~~~ 470 (493)
++||.|+|++|.+.
T Consensus 435 ~sVa~Gla~~a~~~ 448 (450)
T PRK11678 435 GSVTAGLARWAQVV 448 (450)
T ss_pred chHHHHHHHHHHhh
Confidence 99999999999874
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=4.3e-39 Score=322.34 Aligned_cols=309 Identities=22% Similarity=0.275 Sum_probs=243.5
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccC-Ccc-eecHhHhhhhhcCcCchhhcchhhhC
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPN-GES-WVGRQANMMTSLYPSRALFDTKHLVG 165 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~-~~~-~~G~~A~~~~~~~~~~~~~~~k~~lg 165 (493)
-+||||||++|+++.. ++..++ ..||+++++.+ +.+ .+|.+|..+..+.|.+....
T Consensus 5 ~~gIDlGt~~~~i~~~--~~~~v~--------------~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------ 62 (336)
T PRK13928 5 DIGIDLGTANVLVYVK--GKGIVL--------------NEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------ 62 (336)
T ss_pred eeEEEcccccEEEEEC--CCCEEE--------------ccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------
Confidence 3899999999999875 555777 68999999954 344 79999988877766665321
Q ss_pred CCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 036352 166 TVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYA 245 (493)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a 245 (493)
+ |+ .+| .+...+....+|+++++.+..........+++|||++|+..+|++++++
T Consensus 63 ~-----------pi-----~~G---------~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a 117 (336)
T PRK13928 63 R-----------PL-----RDG---------VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREA 117 (336)
T ss_pred c-----------cC-----CCC---------eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 0 11 123 4556677788888887655432222334799999999999999999999
Q ss_pred HHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 036352 246 GDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWR 323 (493)
Q Consensus 246 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~ 323 (493)
++.+|++.+.+++||+|||++|+.+.. +..++|+|+| ||||+++++.+... ..++.++||++||+.|++++..
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998654 6679999999 99999999876433 3567899999999999999987
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----ceEEEEec--ccchhhhccccccceEEEEcHHHHHHHHHHH
Q 036352 324 EFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEP----QVEVKLHN--LLNIQVKKSLVQKDLEVTITRSEFESLVSEL 397 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~----~~~~~i~~--~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~ 397 (493)
++ +.... .+.||++|+.++... ...+.+.. ...+ ....+.|+|++|++++.+.
T Consensus 193 ~~----~~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~--------~~~~~~i~~~~~~eii~~~ 251 (336)
T PRK13928 193 KY----KLLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTG--------LPKTITVTSEEIREALKEP 251 (336)
T ss_pred Hh----chhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCC--------CceEEEECHHHHHHHHHHH
Confidence 74 33222 267999999987542 12233321 1111 4457899999999999999
Q ss_pred HHHHHHHHHHHHHHcCC--CCCCCC-EEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcc
Q 036352 398 IEETGAICQKCLEVANI--TRKDLD-GILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRY 472 (493)
Q Consensus 398 i~~i~~~i~~~l~~~~~--~~~~i~-~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~ 472 (493)
++++.+.+++.|+.++. ....++ .|+|+||+|++|++++++++.|+.++.. ..||+++||.|||+++..+..
T Consensus 252 ~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~---~~~P~~ava~Gaa~~~~~~~~ 326 (336)
T PRK13928 252 VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYI---AEDPISCVALGTGKMLENIDK 326 (336)
T ss_pred HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCcee---cCCHHHHHHHHHHHHHhchHh
Confidence 99999999999999863 345666 7999999999999999999999999888 889999999999999987543
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.2e-38 Score=318.24 Aligned_cols=306 Identities=21% Similarity=0.253 Sum_probs=245.3
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCCc--ceecHhHhhhhhcCcCchhhcchhhh
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGE--SWVGRQANMMTSLYPSRALFDTKHLV 164 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~--~~~G~~A~~~~~~~~~~~~~~~k~~l 164 (493)
..+||||||++|++ +.+++..++ ..||+|+++.++. ..+|.+|..+..+.|.++... +-+
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~~~--------------~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi 66 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGIIL--------------NEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPM 66 (335)
T ss_pred CeEEEEcccccEEE--EECCCcEEe--------------cCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecC
Confidence 36999999999986 445555555 4699999986544 589999999988888877432 111
Q ss_pred CCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCC--CcEEEEeCCCCCHHHHHHH
Q 036352 165 GTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESA--TKAVISVPACFNEAQREAI 242 (493)
Q Consensus 165 g~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~--~~vvitVP~~~~~~~r~~l 242 (493)
.+| .+...++++.+|++++..++..++..+ ..+|||+|++|+..+|+++
T Consensus 67 --------------------~~G---------~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 67 --------------------KDG---------VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred --------------------CCC---------ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 122 345568889999999998877776544 3899999999999999999
Q ss_pred HHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 036352 243 KYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRH 320 (493)
Q Consensus 243 ~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~ 320 (493)
.++++.+|++.+.++.||+|||++++.... ...++|+|+| ||||++++..+... ..++..+||++||+.|.++
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~ 192 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSF 192 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999987654 6689999999 99999999865433 4556789999999999999
Q ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----ceEEEEec--ccchhhhccccccceEEEEcHHHHHHHH
Q 036352 321 LWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEP----QVEVKLHN--LLNIQVKKSLVQKDLEVTITRSEFESLV 394 (493)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~----~~~~~i~~--~~~~~~~~~~~~~~~~~~itr~~~e~~~ 394 (493)
+... ++.... ...||++|+.++... ...+.+.. ...+ ....+.+++++|++++
T Consensus 193 l~~~----~~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~--------~p~~i~i~~~~~~~~i 251 (335)
T PRK13929 193 VRKK----YNLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTG--------LPKTITLESKEIQGAM 251 (335)
T ss_pred HHHH----hCcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCC--------CCeEEEEcHHHHHHHH
Confidence 9876 443332 268999999998632 12222221 1111 3357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCC--CCCCC-EEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHh
Q 036352 395 SELIEETGAICQKCLEVANIT--RKDLD-GILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGE 468 (493)
Q Consensus 395 ~~~i~~i~~~i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~ 468 (493)
.+.+.++.+.|.+.|++++.. ...++ .|+|+||+|++|++.+++++.|+.++.. ..||+++||.||+..-.
T Consensus 252 ~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~---~~~P~~~Va~Ga~~~~~ 325 (335)
T PRK13929 252 RESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHV---AANPLESVAIGTGRSLE 325 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCcee---CCCHHHHHHHHHHHHHH
Confidence 999999999999999998644 35566 6999999999999999999999999888 88999999999998854
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.6e-36 Score=303.96 Aligned_cols=307 Identities=24% Similarity=0.297 Sum_probs=235.2
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccC-Cc-ceecHhHhhhhhcCcCchhhcchhhh
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPN-GE-SWVGRQANMMTSLYPSRALFDTKHLV 164 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~-~~-~~~G~~A~~~~~~~~~~~~~~~k~~l 164 (493)
..|||||||++|+++.. ++..++ .+||++++..+ +. +.+|++|..+..+.|.++... +
T Consensus 6 ~~igIDlGt~~~~i~~~--~~~~~~--------------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~-- 65 (334)
T PRK13927 6 NDLGIDLGTANTLVYVK--GKGIVL--------------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--R-- 65 (334)
T ss_pred ceeEEEcCcceEEEEEC--CCcEEE--------------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--e--
Confidence 47999999999998543 333345 68999999865 33 589999998877666654211 1
Q ss_pred CCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 036352 165 GTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKY 244 (493)
Q Consensus 165 g~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~ 244 (493)
|+ .+| .+...+.+..+|++++......... -..+++|+|++|+..+|+++++
T Consensus 66 -------------pi-----~~G---------~i~d~~~~~~ll~~~~~~~~~~~~~-~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 66 -------------PM-----KDG---------VIADFDVTEKMLKYFIKKVHKNFRP-SPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred -------------cC-----CCC---------eecCHHHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCCHHHHHHHHH
Confidence 11 122 3333455566667766554433222 2489999999999999999999
Q ss_pred HHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 036352 245 AGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLW 322 (493)
Q Consensus 245 a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~ 322 (493)
+++.+|++.+.+++||+|||++++.... ...++|+|+| ||||+++++.+... ..+..++||++||+.|.+++.
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~ 192 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVR 192 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999988655 5678999999 99999999876543 345578999999999999998
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc----eEEEEe--cccchhhhccccccceEEEEcHHHHHHHHHH
Q 036352 323 REFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQ----VEVKLH--NLLNIQVKKSLVQKDLEVTITRSEFESLVSE 396 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~----~~~~i~--~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~ 396 (493)
+++ +.... .+.+|++|+.++.... ..+.+. ....+ .+..+.|+|++|++++.+
T Consensus 193 ~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~e~i~~ 251 (334)
T PRK13927 193 RNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTG--------LPKTITISSNEIREALQE 251 (334)
T ss_pred HHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCC--------CCeEEEECHHHHHHHHHH
Confidence 763 33322 2579999999875432 223332 11122 345789999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC--CCCCC-EEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhh
Q 036352 397 LIEETGAICQKCLEVANIT--RKDLD-GILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKF 470 (493)
Q Consensus 397 ~i~~i~~~i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~ 470 (493)
.++++.+.|.+.|++++.. ...++ .|+|+||+|++|+++++|++.|+.++.. ..||+++||.||++++...
T Consensus 252 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~---~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 252 PLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHV---AEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEe---cCCHHHHHHHHHHHHHhhH
Confidence 9999999999999988643 22334 5999999999999999999999998888 8999999999999998763
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=4.9e-36 Score=300.03 Aligned_cols=308 Identities=22% Similarity=0.282 Sum_probs=232.9
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccC----Cc--ceecHhHhhhhhcCcCchhhcch
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPN----GE--SWVGRQANMMTSLYPSRALFDTK 161 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~----~~--~~~G~~A~~~~~~~~~~~~~~~k 161 (493)
-|||||||+||+++... +..++ ..||+++|..+ .. ..+|.+|..+..+.|.+.. ++
T Consensus 4 ~~giDlGt~~s~i~~~~--~~~~~--------------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~ 65 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKG--RGIVL--------------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AI 65 (333)
T ss_pred eeEEecCcceEEEEECC--CCEEE--------------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EE
Confidence 39999999999998743 33555 67999999854 22 5799999887666666542 12
Q ss_pred hhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHH
Q 036352 162 HLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREA 241 (493)
Q Consensus 162 ~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~ 241 (493)
+.+. +| .+...+.+..++++++.......+.....+++|+|++|+..+|++
T Consensus 66 ~pi~--------------------~G---------~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 66 RPMK--------------------DG---------VIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred ecCC--------------------CC---------EEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH
Confidence 2121 22 233345556666666655433222222389999999999999999
Q ss_pred HHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 036352 242 IKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVR 319 (493)
Q Consensus 242 l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~ 319 (493)
++++++.+|++.+.+++||+|||++|+.... ...++|+|+| ||||+++++.+... ..++.++||++||+.|++
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~ 191 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIIN 191 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHH
Confidence 9999999999999999999999999987544 5678999999 99999999876533 345678999999999999
Q ss_pred HHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc-----eEEEEecccchhhhccccccceEEEEcHHHHHHHH
Q 036352 320 HLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQ-----VEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLV 394 (493)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~ 394 (493)
++..++ +.... ++.||++|+.++.... ..+.+.. .+... .......++++++.+++
T Consensus 192 ~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~i~~~~~~e~i 252 (333)
T TIGR00904 192 YIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRG----RDLVT--GLPRTIEITSVEVREAL 252 (333)
T ss_pred HHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecC----ccccC--CCCeEEEECHHHHHHHH
Confidence 998663 32222 3689999999975322 1222211 00000 12235689999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-CCCC-C-EEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 395 SELIEETGAICQKCLEVANIT-RKDL-D-GILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 395 ~~~i~~i~~~i~~~l~~~~~~-~~~i-~-~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.+.++++.+.+.+.++.++.. ..++ + .|+|+||+|++|+++++|++.|+.++.. ..||+++||.||++++..
T Consensus 253 ~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~---~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 253 QEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIV---ADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCcee---cCChHHHHHHHHHHHHhC
Confidence 999999999999999998654 2234 3 7999999999999999999999999988 899999999999999865
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.3e-36 Score=299.58 Aligned_cols=308 Identities=22% Similarity=0.250 Sum_probs=236.9
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccC-C-cceecHhHhhhhhcCcCchhhcchhhhC
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPN-G-ESWVGRQANMMTSLYPSRALFDTKHLVG 165 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~-~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg 165 (493)
.+||||||++|+++++.+ ..++ .+||+|++..+ + ...+|.+|.......|.+.. +++
T Consensus 10 ~vgiDlGt~~t~i~~~~~--~~~~--------------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~--- 68 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK--GIVL--------------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIR--- 68 (335)
T ss_pred ceEEEcCCCcEEEEECCC--CEEE--------------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Eee---
Confidence 499999999999988632 2344 46999999753 3 35899999877665554431 111
Q ss_pred CCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 036352 166 TVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYA 245 (493)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a 245 (493)
|+ .+| .+...+.+..+|+++++............+++|+|++|+..+|+.+.++
T Consensus 69 ------------pi-----~~G---------~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 69 ------------PL-----KDG---------VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred ------------cC-----CCC---------eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 11 123 3344566788888888666554344457899999999999999999999
Q ss_pred HHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 036352 246 GDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWR 323 (493)
Q Consensus 246 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~ 323 (493)
++.+|++.+.+++||+|||++++.... ...++|||+| ||||++++..+... ..+..++||.+||+.|.+++.+
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~ 197 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRR 197 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHH
Confidence 999999999999999999999987644 4567999999 99999999876533 3556899999999999999987
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc----eEEEEec--ccchhhhccccccceEEEEcHHHHHHHHHHH
Q 036352 324 EFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQ----VEVKLHN--LLNIQVKKSLVQKDLEVTITRSEFESLVSEL 397 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~----~~~~i~~--~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~ 397 (493)
+ ++.... .+.||++|+.++.... ..+.+.. ...+ ....+.|++++|++++.+.
T Consensus 198 ~----~~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~e~i~~~ 256 (335)
T PRK13930 198 K----YNLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTG--------LPKTIEISSEEVREALAEP 256 (335)
T ss_pred H----hCCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCC--------CCeeEEECHHHHHHHHHHH
Confidence 6 333332 2679999999975432 1222221 1111 3347889999999999999
Q ss_pred HHHHHHHHHHHHHHcCCC--CCCCC-EEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhc
Q 036352 398 IEETGAICQKCLEVANIT--RKDLD-GILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFR 471 (493)
Q Consensus 398 i~~i~~~i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~ 471 (493)
++++.+.+.+.|+.++.. ...++ .|+|+||+|++|+++++|++.|+.++.. ..+|++++|.||++++....
T Consensus 257 ~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~---~~~p~~ava~Ga~~~~~~~~ 330 (335)
T PRK13930 257 LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHI---AEDPLTCVARGTGKALENLD 330 (335)
T ss_pred HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCcee---cCCHHHHHHHHHHHHHhChH
Confidence 999999999999987533 22345 4999999999999999999999998888 88999999999999987643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=3.1e-35 Score=287.22 Aligned_cols=309 Identities=24% Similarity=0.283 Sum_probs=225.9
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCC-c-ceecHhHhhhhhcCcCchhhcchhhh
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNG-E-SWVGRQANMMTSLYPSRALFDTKHLV 164 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~-~-~~~G~~A~~~~~~~~~~~~~~~k~~l 164 (493)
.-+||||||++|.|.. .++-.++ ..||+|+++.+. + ..+|++|.....+.|.+... +
T Consensus 2 ~~igIDLGT~~t~i~~--~~~Giv~--------------~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-----~ 60 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYV--KGKGIVL--------------NEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-----V 60 (326)
T ss_dssp SEEEEEE-SSEEEEEE--TTTEEEE--------------EEES-EEEETTT--EEEESHHHHTTTTS-GTTEEE-----E
T ss_pred CceEEecCcccEEEEE--CCCCEEE--------------ecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE-----E
Confidence 3699999999999954 3333555 579999998653 3 36999999888877776511 0
Q ss_pred CCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 036352 165 GTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKY 244 (493)
Q Consensus 165 g~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~ 244 (493)
.|. .+| .+...++...+|+++.+.+.......-..++++||+.-++.+|+++.+
T Consensus 61 ------------~Pl-----~~G---------vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 61 ------------RPL-----KDG---------VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp -------------SE-----ETT---------EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred ------------ccc-----cCC---------cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 111 134 566677888899998887766423344689999999999999999999
Q ss_pred HHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 036352 245 AGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLW 322 (493)
Q Consensus 245 a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~ 322 (493)
++..+|.+.+.+++||.|||+..+.+-. +...+|||+| ||||++++..++-. ......+||++||++|.+|+.
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv-----~s~si~~gG~~~DeaI~~~ir 189 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIV-----ASRSIRIGGDDIDEAIIRYIR 189 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEE-----EEEEES-SHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEE-----EEEEEEecCcchhHHHHHHHH
Confidence 9999999999999999999999988765 7788999999 99999999654433 344478999999999999999
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----ceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHH
Q 036352 323 REFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEP----QVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELI 398 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i 398 (493)
++ |++.+.. ..||++|+.++... .....+. |.+..++ ..-.+.|+-+++.+++.+.+
T Consensus 190 ~~----y~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~----Grd~~tG--lP~~~~i~~~ev~~ai~~~~ 250 (326)
T PF06723_consen 190 EK----YNLLIGE---------RTAEKIKIEIGSASPPEEEESMEVR----GRDLITG--LPKSIEITSSEVREAIEPPV 250 (326)
T ss_dssp HH----HSEE--H---------HHHHHHHHHH-BSS--HHHHEEEEE----EEETTTT--CEEEEEEEHHHHHHHHHHHH
T ss_pred Hh----hCcccCH---------HHHHHHHHhcceeeccCCCceEEEE----CccccCC--CcEEEEEcHHHHHHHHHHHH
Confidence 98 5666664 88999999987542 2233432 2222222 33488999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC-CCCC--CEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 399 EETGAICQKCLEVANIT-RKDL--DGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 399 ~~i~~~i~~~l~~~~~~-~~~i--~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.+|.+.|+++|++...+ ..|| +.|+|+||+++++++.++|++.++.++.. ..||.++||.||......
T Consensus 251 ~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~v---a~~P~~~va~G~~~~l~~ 321 (326)
T PF06723_consen 251 DQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRV---ADDPLTAVARGAGKLLEN 321 (326)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE----SSTTTHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEE---cCCHHHHHHHHHHHHHhC
Confidence 99999999999986433 2244 68999999999999999999999999999 999999999999987654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.5e-31 Score=246.82 Aligned_cols=316 Identities=23% Similarity=0.271 Sum_probs=250.3
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCC--c--ceecHhHhhhhhcCcCchhhcch
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNG--E--SWVGRQANMMTSLYPSRALFDTK 161 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~--~--~~~G~~A~~~~~~~~~~~~~~~k 161 (493)
+.-+||||||.||.|..- ++--++ .-||++++..++ . ..+|.+|+.+..+.|.+..
T Consensus 6 s~diGIDLGTanTlV~~k--~kgIVl--------------~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~---- 65 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK--GKGIVL--------------NEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV---- 65 (342)
T ss_pred cccceeeecccceEEEEc--CceEEe--------------cCceEEEEeecCCCceEEEehHHHHHHhccCCCCce----
Confidence 348999999999999654 333445 569999998732 2 2799999988888888762
Q ss_pred hhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCCCCCHHHHH
Q 036352 162 HLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLK-ESATKAVISVPACFNEAQRE 240 (493)
Q Consensus 162 ~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~-~~~~~vvitVP~~~~~~~r~ 240 (493)
-+.+..|| .+...++...+|+++++....... .....+++.+|..-++.+|+
T Consensus 66 ------------------aiRPmkdG---------VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 66 ------------------AIRPMKDG---------VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred ------------------EEeecCCc---------EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 11222345 667778888888998887764333 44467999999999999999
Q ss_pred HHHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 036352 241 AIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLV 318 (493)
Q Consensus 241 ~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~ 318 (493)
+++++++.+|.+.+.+++||.|||+..+..-. +..-+|||+| ||||++++.+.+.. +..+..+||+.||+.+.
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv-----~~~Sirv~GD~~De~Ii 193 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGDKMDEAII 193 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEE-----EEeeEEEecchhhHHHH
Confidence 99999999999999999999999998887754 5557999999 99999999988766 56668899999999999
Q ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCce--EEEEecccchhhhccccccceEEEEcHHHHHHHHHH
Q 036352 319 RHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQV--EVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSE 396 (493)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~ 396 (493)
+|+.++ |++-+.. +.+|++|......-.. .-..+....+.+...+.|. .++++-+++.+.+++
T Consensus 194 ~yvr~~----~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk--~i~i~s~ev~eal~~ 258 (342)
T COG1077 194 VYVRKK----YNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPK--TITINSEEIAEALEE 258 (342)
T ss_pred HHHHHH----hCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCe--eEEEcHHHHHHHHHH
Confidence 999988 7777775 6799999987653221 0011111223333333444 789999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC-CCCC--CEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhc
Q 036352 397 LIEETGAICQKCLEVANIT-RKDL--DGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFR 471 (493)
Q Consensus 397 ~i~~i~~~i~~~l~~~~~~-~~~i--~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~ 471 (493)
.++.|.+.++..|++...+ ..+| ..++|+||++.+.++.+.+.+..+.++.. ..||..+||.|+.+....+.
T Consensus 259 ~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~i---a~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 259 PLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVII---ADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEE---CCChHHHHHhccchhhhhhH
Confidence 9999999999999997544 3344 45999999999999999999999999999 99999999999998887654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=1.4e-29 Score=240.11 Aligned_cols=203 Identities=22% Similarity=0.259 Sum_probs=174.4
Q ss_pred EeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCCCCeE
Q 036352 197 IFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKRDGLF 276 (493)
Q Consensus 197 ~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~v 276 (493)
.+...+....+|+++++.++.+++.+...+|+|||++|++.+|+++.++++.+|++.+.++.||.|++++|... ..
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----~~ 110 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----NG 110 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----Cc
Confidence 45666788999999999998888888899999999999999999999999999999999999999999998754 36
Q ss_pred EEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcC
Q 036352 277 AVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLS 355 (493)
Q Consensus 277 lVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls 355 (493)
+|+|+| ||||+++++.+... ..++.++||++||+.|.+.+. ++ +.+||++|+.++
T Consensus 111 ~vvDiGggtt~i~i~~~G~i~-----~~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~~ 166 (239)
T TIGR02529 111 AVVDVGGGTTGISILKKGKVI-----YSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGHK 166 (239)
T ss_pred EEEEeCCCcEEEEEEECCeEE-----EEEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcC
Confidence 999999 99999998644322 245678999999999875542 22 278999998643
Q ss_pred CCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHH
Q 036352 356 SEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVR 435 (493)
Q Consensus 356 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~ 435 (493)
. .+++.+++.+.++++.+.+++.|++. +++.|+|+||++++|+++
T Consensus 167 ~------------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~ 211 (239)
T TIGR02529 167 D------------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFA 211 (239)
T ss_pred C------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHH
Confidence 1 24567789999999999999999863 467999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCChhHHHHhhHHH
Q 036352 436 EYMELFFGKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 436 ~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
+.+++.|+.++.. +.||++++|.|||+
T Consensus 212 e~l~~~lg~~v~~---~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 212 DVFEKQLGLNVIK---PQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHhCCCccc---CCCCCeehhheeec
Confidence 9999999999988 99999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=1.5e-26 Score=223.24 Aligned_cols=201 Identities=27% Similarity=0.333 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEE
Q 036352 201 AKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYS 280 (493)
Q Consensus 201 ~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvD 280 (493)
.+.....|+++++.++.+.+.++..++++||..|+..++..+.++++.+|++...++.||.|++.++... ..+++|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~----~~~vvD 141 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID----NGAVVD 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----CcEEEE
Confidence 5566778899999999888888899999999999999999999999999999999999999999987654 269999
Q ss_pred eC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Q 036352 281 FG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQ 359 (493)
Q Consensus 281 iG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~ 359 (493)
+| |||++++++-+... ..++.++||++||+.|++++.-. +++||++|+.++
T Consensus 142 IGggtt~i~v~~~g~~~-----~~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~---- 193 (267)
T PRK15080 142 IGGGTTGISILKDGKVV-----YSADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK---- 193 (267)
T ss_pred eCCCcEEEEEEECCeEE-----EEecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC----
Confidence 99 99999998643322 23568999999999999775321 278899988642
Q ss_pred eEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHH
Q 036352 360 VEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYME 439 (493)
Q Consensus 360 ~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~ 439 (493)
+++++.+++++.++++.+.+++.++.. +++.|+|+||+|++|++++.++
T Consensus 194 --------------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~ 242 (267)
T PRK15080 194 --------------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFE 242 (267)
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHH
Confidence 236788999999999999999999863 5789999999999999999999
Q ss_pred HHhCCCCCCCCCCCChhHHHHhhHHHHH
Q 036352 440 LFFGKSPLKSPRGVTPDEAVVIGAAIHG 467 (493)
Q Consensus 440 ~~fg~~~~~~~~~~~p~~aVA~GAa~~a 467 (493)
+.||.++.. +.||++++|.|||+++
T Consensus 243 ~~lg~~v~~---~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 243 KQTGLPVHK---PQHPLFVTPLGIALSC 267 (267)
T ss_pred HHhCCCccc---CCCchHHHHHHHHhhC
Confidence 999999988 8999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.92 E-value=1.6e-23 Score=212.76 Aligned_cols=196 Identities=18% Similarity=0.271 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 036352 236 EAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDF 313 (493)
Q Consensus 236 ~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~i 313 (493)
....+.+.++++.||+++..++.||.|++++++.... ...++|+|+| ||||++++..+... .....++||++|
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~-----~~~~i~~GG~~i 231 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR-----YTKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE-----EEeeecchHHHH
Confidence 3567788889999999999999999999999866543 6679999999 99999998643322 234478999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCC------CceEEEEecccchhhhccccccceEEEEcH
Q 036352 314 DLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSE------PQVEVKLHNLLNIQVKKSLVQKDLEVTITR 387 (493)
Q Consensus 314 d~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~itr 387 (493)
|+.|.+.+... +.+||++|+.++.. ....++++... .+....++|
T Consensus 232 t~~i~~~l~~~-------------------~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~is~ 282 (371)
T TIGR01174 232 TKDIAKALRTP-------------------LEEAERIKIKYGCASIPLEGPDENIEIPSVG----------ERPPRSLSR 282 (371)
T ss_pred HHHHHHHhCCC-------------------HHHHHHHHHHeeEecccCCCCCCEEEeccCC----------CCCCeEEcH
Confidence 99988654211 37899999998863 23445555432 345689999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCCE-EEEecCCCCcHHHHHHHHHHhCCCCCCCC---------CCCChh
Q 036352 388 SEFESLVSELIEETGAICQ-KCLEVANITRKDLDG-ILVVGGLGCVPSVREYMELFFGKSPLKSP---------RGVTPD 456 (493)
Q Consensus 388 ~~~e~~~~~~i~~i~~~i~-~~l~~~~~~~~~i~~-VvLvGG~s~~p~v~~~l~~~fg~~~~~~~---------~~~~p~ 456 (493)
++|++++++.++++.+.++ +.|+.++.. .+++. |+|+||+|++|++++.+++.|+.++.... ...+|.
T Consensus 283 ~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~ 361 (371)
T TIGR01174 283 KELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPE 361 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcH
Confidence 9999999999999999997 999988776 56766 99999999999999999999987553310 023799
Q ss_pred HHHHhhHHHH
Q 036352 457 EAVVIGAAIH 466 (493)
Q Consensus 457 ~aVA~GAa~~ 466 (493)
.++|.|+++|
T Consensus 362 ~~~a~Gl~~~ 371 (371)
T TIGR01174 362 YSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.92 E-value=4.5e-23 Score=211.94 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 036352 238 QREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDL 315 (493)
Q Consensus 238 ~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~ 315 (493)
..+.+.+|++.||++...++.||.|+|.+++.... +..++|+|+| ||||++++.- +.+ ......++||+++++
T Consensus 167 ~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~--G~l---~~~~~i~~GG~~it~ 241 (420)
T PRK09472 167 MAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTG--GAL---RHTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEEC--CEE---EEEeeeechHHHHHH
Confidence 35556779999999999999999999999977655 6789999999 9999999973 321 134558999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCC------CceEEEEecccchhhhccccccceEEEEcHHH
Q 036352 316 LLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSE------PQVEVKLHNLLNIQVKKSLVQKDLEVTITRSE 389 (493)
Q Consensus 316 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~ 389 (493)
.|+..+.-. +..||++|..++.. +...+.++..... ....+++++
T Consensus 242 dIa~~l~i~-------------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~----------~~~~i~~~~ 292 (420)
T PRK09472 242 DIAYAFGTP-------------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR----------PPRSLQRQT 292 (420)
T ss_pred HHHHHhCcC-------------------HHHHHHHHHhcceeccccCCCCceeEecCCCCC----------CCeEEcHHH
Confidence 998655321 37899999876532 2344555533221 135889999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCC-----C----CC
Q 036352 390 FESLVSELIEETGAICQKCL-------EVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSP-----R----GV 453 (493)
Q Consensus 390 ~e~~~~~~i~~i~~~i~~~l-------~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~-----~----~~ 453 (493)
+.+++.+.++++.+.+++.+ ...+.....++.|+|+||++++|++++.+++.|+.++.... . ..
T Consensus 293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~ 372 (420)
T PRK09472 293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQ 372 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcC
Confidence 99999998888888887655 55566666789999999999999999999999986553310 0 14
Q ss_pred ChhHHHHhhHHHHHhh
Q 036352 454 TPDEAVVIGAAIHGEK 469 (493)
Q Consensus 454 ~p~~aVA~GAa~~a~~ 469 (493)
+|..++|.|+++|+..
T Consensus 373 ~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 373 EPYYSTAVGLLHYGKE 388 (420)
T ss_pred CcHHHHHHHHHHHhhh
Confidence 8999999999999875
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.89 E-value=5.3e-21 Score=191.69 Aligned_cols=326 Identities=19% Similarity=0.259 Sum_probs=223.8
Q ss_pred ceEEEEcCCccEEEEEE--eCC-ceEEEEccCCCccccCCCcccceEEEEccCCcceecHhHhhhhhcCcCchhhcchhh
Q 036352 87 NVLGIDLGTTYSRVAVM--QGE-DPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHL 163 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~--~~~-~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~ 163 (493)
.++|+|+||+.+++.+. .++ ..+++-- | ..||--- .+ .....-++..+..+ .++....+.
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~--g---------~~~SrGi--k~-G~I~di~~~~~sI~---~av~~AE~m 69 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGV--G---------SHPSRGI--KK-GVIVDLDAAAQSIK---KAVEAAERM 69 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEee--e---------cccCccc--cc-ceEEcHHHHHHHHH---HHHHHHHHh
Confidence 69999999999998776 344 3555522 1 2233111 12 23333333333222 333444444
Q ss_pred hCCCCCCchhhcccCCeEEeCCCCceEEEeCC-eEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCC--------
Q 036352 164 VGTVYDSSKVQTSLYPKIVRGFKGEAWVETEF-GIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACF-------- 234 (493)
Q Consensus 164 lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~-------- 234 (493)
.|....+..+. ++=......+....+.+++ +.++.+|+ ..+.+.|......+...++=..|-.|
T Consensus 70 ag~~i~~v~vs--~sG~~i~s~~~~g~v~i~~~~eIt~~DI-----~rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I 142 (418)
T COG0849 70 AGCEIKSVIVS--LSGNHIKSQNVNGEVSISEEKEITQEDI-----ERVLEAAKAVAIPPEREILHVIPQEYIVDGQEGI 142 (418)
T ss_pred cCCCcceEEEE--eccceeEEEeeEEEEEcCCCCccCHHHH-----HHHHHHHHhhccCCCceEEEEeeeEEEECCcccc
Confidence 55443322211 1111111122333444555 77888887 45555554333332233333333333
Q ss_pred --------------------CHHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEE
Q 036352 235 --------------------NEAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEI 292 (493)
Q Consensus 235 --------------------~~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~ 292 (493)
...-.++|.+|++++|+++..++.+|.|++.+.+.+.. +..++++|+| ||||+++++-
T Consensus 143 ~dP~gm~G~rL~v~vhvit~~~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~ 222 (418)
T COG0849 143 KDPLGMSGVRLEVEVHVITGPKNILENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKN 222 (418)
T ss_pred CCccccccceEEEEEEEEEcchHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEEC
Confidence 12457789999999999999999999999999988876 7899999999 9999999975
Q ss_pred eCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCC------CceEEEEec
Q 036352 293 SNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSE------PQVEVKLHN 366 (493)
Q Consensus 293 ~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~------~~~~~~i~~ 366 (493)
+... +.+..++||++++.+|+.-|...+ ..||++|..+... +...+.++.
T Consensus 223 G~l~-----~~~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~ 278 (418)
T COG0849 223 GALR-----YTGVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPS 278 (418)
T ss_pred CEEE-----EEeeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEeccc
Confidence 5544 566689999999999998776553 8899999998653 234455654
Q ss_pred ccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCC
Q 036352 367 LLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSP 446 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~ 446 (493)
..+ +....++++++.+++++.+.+++.+++..|++.+.+..-...|+|+||++.+|++.+..++.|+.++
T Consensus 279 vg~----------~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~v 348 (418)
T COG0849 279 VGS----------DIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPV 348 (418)
T ss_pred CCC----------cccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCce
Confidence 433 2377899999999999999999999999999999876667999999999999999999999997655
Q ss_pred CCCCC---------CCChhHHHHhhHHHHHhhh
Q 036352 447 LKSPR---------GVTPDEAVVIGAAIHGEKF 470 (493)
Q Consensus 447 ~~~~~---------~~~p~~aVA~GAa~~a~~~ 470 (493)
..-.+ ..+|..+.|.|..+++...
T Consensus 349 Rig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 349 RLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred EeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 43211 3468999999999999964
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.80 E-value=1.2e-18 Score=177.25 Aligned_cols=315 Identities=16% Similarity=0.093 Sum_probs=198.3
Q ss_pred eEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccC---------CcceecHhHhhhhhcCcCchhh
Q 036352 88 VLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPN---------GESWVGRQANMMTSLYPSRALF 158 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~---------~~~~~G~~A~~~~~~~~~~~~~ 158 (493)
.|.||+||.++++++..++.|.. .+||+++...+ ....+|.+|...... ....
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~---------------~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~~-- 62 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRV---------------VFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-GLEL-- 62 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCce---------------EeeccceeecCcccccccCCCceEEchhhhhCCCC-ceEE--
Confidence 47899999999999986665543 36777765432 356788777542211 0000
Q ss_pred cchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHH
Q 036352 159 DTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQ 238 (493)
Q Consensus 159 ~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~ 238 (493)
..|++ +| .+...+.+..+++++....... ......+++++|..++..+
T Consensus 63 -----------------~~P~~-----~G---------~i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~ 110 (371)
T cd00012 63 -----------------IYPIE-----HG---------IVVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSN 110 (371)
T ss_pred -----------------ccccc-----CC---------EEeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHH
Confidence 01211 23 3445666777777777543211 2234689999999999888
Q ss_pred HHHHHH-HHHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHH
Q 036352 239 REAIKY-AGDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLL 316 (493)
Q Consensus 239 r~~l~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~ 316 (493)
|+.+.+ +++..|++.+.++++|.+++++++. .+.+|||+| ++|+++.+. ++..-. ......++||+++|+.
T Consensus 111 r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~i~pv~--~G~~~~-~~~~~~~~GG~~l~~~ 183 (371)
T cd00012 111 REKTTEIMFETFNVPALYVAIQAVLSLYASGR----TTGLVVDSGDGVTHVVPVY--DGYVLP-HAIKRLDLAGRDLTRY 183 (371)
T ss_pred HHHHHHHhhccCCCCEEEEechHHHHHHhcCC----CeEEEEECCCCeeEEEEEE--CCEEch-hhheeccccHHHHHHH
Confidence 888877 5778999999999999999999874 489999999 999997664 333211 1233478999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEE-EE---ecccchhhhccccccceEEEEcHHHH--
Q 036352 317 LVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEV-KL---HNLLNIQVKKSLVQKDLEVTITRSEF-- 390 (493)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~-~i---~~~~~~~~~~~~~~~~~~~~itr~~~-- 390 (493)
|.+++.... ...+.. .-...++.+|+.+........ .. .....+......-|....+.++.+.|
T Consensus 184 l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~ 253 (371)
T cd00012 184 LKELLRERG---YELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRA 253 (371)
T ss_pred HHHHHHhcC---CCccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhC
Confidence 999886652 111111 113457777777543211000 00 00000000000011223556665433
Q ss_pred H-HHHHH-----HHHHHHHHHHHHHHHcCCC--CCCCCEEEEecCCCCcHHHHHHHHHHhCC--CC-----CCCCCCCCh
Q 036352 391 E-SLVSE-----LIEETGAICQKCLEVANIT--RKDLDGILVVGGLGCVPSVREYMELFFGK--SP-----LKSPRGVTP 455 (493)
Q Consensus 391 e-~~~~~-----~i~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~fg~--~~-----~~~~~~~~p 455 (493)
- .++.| ....+.+.|.+.++.+..+ ..-.+.|+|+||+|++|++.++|.+.+.. +. .......+|
T Consensus 254 ~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~ 333 (371)
T cd00012 254 PEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPER 333 (371)
T ss_pred hHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCc
Confidence 2 23333 2347788888888877543 33358899999999999999999988842 11 111126789
Q ss_pred hHHHHhhHHHHHhh
Q 036352 456 DEAVVIGAAIHGEK 469 (493)
Q Consensus 456 ~~aVA~GAa~~a~~ 469 (493)
..++-.||.++|..
T Consensus 334 ~~~aw~G~si~as~ 347 (371)
T cd00012 334 KYSVWLGGSILASL 347 (371)
T ss_pred cccEEeCchhhcCc
Confidence 99999999999976
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.76 E-value=8e-18 Score=171.41 Aligned_cols=301 Identities=16% Similarity=0.156 Sum_probs=192.2
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCC--------cceecHhHhhhhhcCcCchhh
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNG--------ESWVGRQANMMTSLYPSRALF 158 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~--------~~~~G~~A~~~~~~~~~~~~~ 158 (493)
..|+||+||.++++++..+..|.++ +||+++...++ ...+|.+|..... ..
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~---------------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~----~~-- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV---------------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRG----GL-- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE---------------ccceeeEecccccccCCCcceEecchhhhcCC----Cc--
Confidence 3799999999999999876666544 78888876442 2467776632110 00
Q ss_pred cchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHH
Q 036352 159 DTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQ 238 (493)
Q Consensus 159 ~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~ 238 (493)
.+. .|++ +| .+...+.+..+++++...... .......+++++|...+..+
T Consensus 61 ~~~---------------~P~~-----~G---------~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~ 110 (373)
T smart00268 61 ELK---------------YPIE-----HG---------IVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSN 110 (373)
T ss_pred eec---------------CCCc-----CC---------EEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHH
Confidence 000 1221 33 455677778888887764211 11234689999999998999
Q ss_pred HHHHHHH-HHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHH
Q 036352 239 REAIKYA-GDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLL 316 (493)
Q Consensus 239 r~~l~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~ 316 (493)
|+.+.+. ++..|++.+.++++|.+++++++ ..+.+|||+| ++|+++.+. ++.. +.......++||.++|+.
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~ 183 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASG----RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDY 183 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCC----CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHH
Confidence 9999886 56789999999999999999987 4578999999 999998775 3332 111223368999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc-------------------eEEEEecccchhhhcccc
Q 036352 317 LVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQ-------------------VEVKLHNLLNIQVKKSLV 377 (493)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~-------------------~~~~i~~~~~~~~~~~~~ 377 (493)
|.+++... +.... .. .-...++.+|+.+..... ..+.+| ++
T Consensus 184 l~~~l~~~-----~~~~~--~~---~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lp---dg------- 243 (373)
T smart00268 184 LKELLSER-----GYQFN--SS---AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELP---DG------- 243 (373)
T ss_pred HHHHHHhc-----CCCCC--cH---HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECC---CC-------
Confidence 99888662 00111 00 112456666666532110 111111 11
Q ss_pred ccceEEEEcHHHH--H-HHHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCEEEEecCCCCcHHHHHHHHHHhC----
Q 036352 378 QKDLEVTITRSEF--E-SLVSEL-----IEETGAICQKCLEVANIT--RKDLDGILVVGGLGCVPSVREYMELFFG---- 443 (493)
Q Consensus 378 ~~~~~~~itr~~~--e-~~~~~~-----i~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~fg---- 443 (493)
. .+.+..+.+ - .++.|. ...+.++|.+++..+..+ ..-.+.|+|+||+|++|++.++|.+.+.
T Consensus 244 -~--~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 244 -N--TIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred -C--EEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 2 233333222 1 223331 347778888888876543 2223779999999999999999998872
Q ss_pred --CCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 444 --KSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 444 --~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.++.. ..+.++..++=.||+++|..
T Consensus 321 ~~~~v~v-~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 321 KKLKVKV-IAPPERKYSVWLGGSILASL 347 (373)
T ss_pred CCceeEE-ecCCCCccceEeCcccccCc
Confidence 11111 12456777888899988875
No 35
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.69 E-value=5.5e-15 Score=152.28 Aligned_cols=286 Identities=15% Similarity=0.119 Sum_probs=180.0
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCC------------cceecHhHhhhhhcCc
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNG------------ESWVGRQANMMTSLYP 153 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~------------~~~~G~~A~~~~~~~~ 153 (493)
...|.||+||.++++++..+..|.++ +||+++...++ ++.+|++|....
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~---------------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~---- 64 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYI---------------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS---- 64 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEE---------------ecceeEEeccccccccccccccCCEEEcchhhhCc----
Confidence 34799999999999999876667644 67777654221 245566554310
Q ss_pred CchhhcchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 036352 154 SRALFDTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPAC 233 (493)
Q Consensus 154 ~~~~~~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~ 233 (493)
.. ..+ ..|++ +| .+...+.+..+++++...... .......+++|.|..
T Consensus 65 ~~--~~l---------------~~Pi~-----~G---------~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~ 112 (414)
T PTZ00280 65 KS--YTL---------------TYPMK-----HG---------IVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPM 112 (414)
T ss_pred CC--cEE---------------ecCcc-----CC---------EeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCC
Confidence 00 000 02221 33 456677777788876543211 122335789999999
Q ss_pred CCHHHHHHHHHH-HHHcCCCeeeeccchHHHHHHhcccC------CCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCC
Q 036352 234 FNEAQREAIKYA-GDIAGLDIQGVVEDPVAAALAYGLDK------RDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKS 305 (493)
Q Consensus 234 ~~~~~r~~l~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~------~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~ 305 (493)
++..+|+.+.+. ++..+++.+.+..+|.++++++.... ...+-+|||+| ++|+++.+. +|..-..+. ..
T Consensus 113 ~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G~~l~~~~-~~ 189 (414)
T PTZ00280 113 NPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DGYVIGSSI-KH 189 (414)
T ss_pred CcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CCEEcccce-EE
Confidence 999999998885 67779999999999999999872211 13367999999 999997554 333211122 23
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc-----------------eEEEEeccc
Q 036352 306 LSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQ-----------------VEVKLHNLL 368 (493)
Q Consensus 306 ~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~-----------------~~~~i~~~~ 368 (493)
.++||.++|+.|.++|.++ +..+... ..+..++.+|+.++-... ..+.++...
T Consensus 190 ~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~ 259 (414)
T PTZ00280 190 IPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSV 259 (414)
T ss_pred ecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCC
Confidence 6899999999999988654 1112111 112457777777653211 011111111
Q ss_pred chhhhccccccceEEEEcHHHHHH---HHHHHH------HHHHHHHHHHHHHcCCC--CCCCCEEEEecCCCCcHHHHHH
Q 036352 369 NIQVKKSLVQKDLEVTITRSEFES---LVSELI------EETGAICQKCLEVANIT--RKDLDGILVVGGLGCVPSVREY 437 (493)
Q Consensus 369 ~~~~~~~~~~~~~~~~itr~~~e~---~~~~~i------~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~ 437 (493)
.+ ....+.+..+.|.- ++.|.+ ..+.++|.+.+.++..+ ..-.+.|+|+||+|.+|++.++
T Consensus 260 ~g--------~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eR 331 (414)
T PTZ00280 260 TK--------KPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKR 331 (414)
T ss_pred CC--------CccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHH
Confidence 11 22356777665542 344422 25678888888887554 2234789999999999999999
Q ss_pred HHHHhC
Q 036352 438 MELFFG 443 (493)
Q Consensus 438 l~~~fg 443 (493)
|.+.+.
T Consensus 332 L~~El~ 337 (414)
T PTZ00280 332 LQRDVR 337 (414)
T ss_pred HHHHHH
Confidence 998874
No 36
>PTZ00452 actin; Provisional
Probab=99.67 E-value=5.2e-15 Score=149.94 Aligned_cols=303 Identities=15% Similarity=0.131 Sum_probs=192.0
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCC---------cceecHhHhhhhhcCcCch
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNG---------ESWVGRQANMMTSLYPSRA 156 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~---------~~~~G~~A~~~~~~~~~~~ 156 (493)
...|.||+|+.++++++..+..|.++ +||+|....+. ...+|++|... +.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i---------------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~------~~ 63 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSC---------------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAK------RG 63 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEE---------------ecceeEEECCccccccccccceEEChhhhcc------cc
Confidence 34799999999999999977777644 56666554321 23556655321 00
Q ss_pred hhcchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCH
Q 036352 157 LFDTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNE 236 (493)
Q Consensus 157 ~~~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~ 236 (493)
...++ .|+ ++| .+...+.+..+++|+...... .......+++|-|..++.
T Consensus 64 ~~~l~---------------~Pi-----~~G---------~I~dwd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~ 113 (375)
T PTZ00452 64 VLAIK---------------EPI-----QNG---------IINSWDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSK 113 (375)
T ss_pred CcEEc---------------ccC-----cCC---------EEcCHHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCH
Confidence 01111 111 133 556677777777776543211 233446899999999999
Q ss_pred HHHHHHHHH-HHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHH
Q 036352 237 AQREAIKYA-GDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFD 314 (493)
Q Consensus 237 ~~r~~l~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id 314 (493)
..|+.|.+. ++..+++.+.+..+|.+++++++. .+-+|||+| +.|+++-+. +|..-..+... .++||.++|
T Consensus 114 ~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----~tglVVDiG~~~t~v~PV~--dG~~l~~~~~r-~~~gG~~lt 186 (375)
T PTZ00452 114 FNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----TIGLVVDSGEGVTHCVPVF--EGHQIPQAITK-INLAGRLCT 186 (375)
T ss_pred HHHHHHHHHHhhccCCceEEEechHHHHHHHCCC----ceeeeecCCCCcceEEEEE--CCEEeccceEE-eeccchHHH
Confidence 999999885 777899999999999999998874 478999999 998886443 44322222233 689999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEEEecccchhhhccccc
Q 036352 315 LLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEP----------------QVEVKLHNLLNIQVKKSLVQ 378 (493)
Q Consensus 315 ~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~----------------~~~~~i~~~~~~~~~~~~~~ 378 (493)
+.|.+.|... +....... . +..++.+|+.++-.. ...+.+|
T Consensus 187 ~~L~~lL~~~-----~~~~~~~~--~---~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP------------- 243 (375)
T PTZ00452 187 DYLTQILQEL-----GYSLTEPH--Q---RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP------------- 243 (375)
T ss_pred HHHHHHHHhc-----CCCCCCHH--H---HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC-------------
Confidence 9999887543 22222111 0 133566666654211 0112222
Q ss_pred cceEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEecCCCCcHHHHHHHHHHhCC----
Q 036352 379 KDLEVTITRSEFE---SLVSELI-----EETGAICQKCLEVANIT--RKDLDGILVVGGLGCVPSVREYMELFFGK---- 444 (493)
Q Consensus 379 ~~~~~~itr~~~e---~~~~~~i-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~fg~---- 444 (493)
....+.+..+.|. -+++|.+ ..+.+++.+.+..++.+ ..-.+.|+|+||+|.+|++.++|.+.+..
T Consensus 244 Dg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~ 323 (375)
T PTZ00452 244 DGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS 323 (375)
T ss_pred CCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC
Confidence 2225566666552 2334432 35677888888887544 33448999999999999999999988721
Q ss_pred CC-CCCCCCCChhHHHHhhHHHHHhh
Q 036352 445 SP-LKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 445 ~~-~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.. ..+..+.++..++=+|++++|..
T Consensus 324 ~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 324 QLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred CceeEEecCCCcceeEEECchhhcCc
Confidence 11 11112456667777899999874
No 37
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.66 E-value=2.4e-16 Score=138.04 Aligned_cols=196 Identities=23% Similarity=0.257 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-Ce
Q 036352 206 FILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GT 284 (493)
Q Consensus 206 ~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gT 284 (493)
.+.+++++.++++++.+.....-++|..-.....+...+..+.||+++..+++||+|||.-..++ .-.|||+| ||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~----dg~VVDiGGGT 151 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD----DGGVVDIGGGT 151 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC----CCcEEEeCCCc
Confidence 34688899999999999888889999887666666677788899999999999999998877665 35899999 99
Q ss_pred eEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEE
Q 036352 285 FEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKL 364 (493)
Q Consensus 285 tdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i 364 (493)
|-+++++-++-. +..+.+.||.+++.-|+-+ +++++ +++|..|+.--..
T Consensus 152 TGIsi~kkGkVi-----y~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~------- 200 (277)
T COG4820 152 TGISIVKKGKVI-----YSADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG------- 200 (277)
T ss_pred ceeEEEEcCcEE-----EeccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc-------
Confidence 999999877766 4667889999988777644 45444 6788887742111
Q ss_pred ecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCC
Q 036352 365 HNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGK 444 (493)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~ 444 (493)
+|.-..+.|++++..+.+.+.++.. .+..+.|+||+|.-|++.+.+++.|+.
T Consensus 201 -----------------------~Eif~~v~PV~eKMAeIv~~hie~~-----~i~dl~lvGGac~~~g~e~~Fe~~l~l 252 (277)
T COG4820 201 -----------------------EEIFPVVKPVYEKMAEIVARHIEGQ-----GITDLWLVGGACMQPGVEELFEKQLAL 252 (277)
T ss_pred -----------------------hhcccchhHHHHHHHHHHHHHhccC-----CCcceEEecccccCccHHHHHHHHhcc
Confidence 1222346799999999999988864 466899999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHhhHHHHH
Q 036352 445 SPLKSPRGVTPDEAVVIGAAIHG 467 (493)
Q Consensus 445 ~~~~~~~~~~p~~aVA~GAa~~a 467 (493)
++.. +..|..-.-.|.|+-+
T Consensus 253 ~v~~---P~~p~y~TPLgIA~sg 272 (277)
T COG4820 253 QVHL---PQHPLYMTPLGIASSG 272 (277)
T ss_pred cccc---CCCcceechhhhhhcc
Confidence 9998 8888887777776544
No 38
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.62 E-value=2e-13 Score=136.66 Aligned_cols=204 Identities=17% Similarity=0.203 Sum_probs=137.9
Q ss_pred EEEEeCCCCCHHH-HHHHHHHHHHc------------CCCeeeeccchHHHHHHhcccC---------CCCeEEEEEeC-
Q 036352 226 AVISVPACFNEAQ-REAIKYAGDIA------------GLDIQGVVEDPVAAALAYGLDK---------RDGLFAVYSFG- 282 (493)
Q Consensus 226 vvitVP~~~~~~~-r~~l~~a~~~a------------Gl~~~~li~Ep~Aaa~~~~~~~---------~~~~vlVvDiG- 282 (493)
++...|..+-..+ ++.+++..... .+..+.+++||.+|.+.+..+. +...++|+|+|
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 3458898885444 36677665321 1245678999999988776542 14578999999
Q ss_pred CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEE
Q 036352 283 GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEV 362 (493)
Q Consensus 283 gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~ 362 (493)
+|||++++. ++.+. ....+..+.|..++.+.+.+.+..+. ++..+. . ..++++-+ .. .+
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~-------~~ie~~l~---~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKE---EGASIT--P-------YMLEKGLE---YG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhC---CCCCCC--H-------HHHHHHHH---cC---cE
Confidence 999999886 33322 22344478899999999998886442 333332 1 22222211 11 11
Q ss_pred EEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh
Q 036352 363 KLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF 442 (493)
Q Consensus 363 ~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f 442 (493)
.+. .+ . .+.+ ++++.++++++++++.+.++..+.. ..+++.|+|+||++++ +++.|++.|
T Consensus 254 ~~~---~~--------~--~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f 313 (344)
T PRK13917 254 KLN---QK--------T--VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWY 313 (344)
T ss_pred EeC---CC--------c--eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHc
Confidence 111 10 1 2233 4567778888898888888887753 3478999999999986 899999999
Q ss_pred CCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 443 GKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 443 g~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+.- .. ..||..|.|.|...+|..+.+..
T Consensus 314 ~~~-~~---~~~p~~ANa~G~~~~g~~~~~~~ 341 (344)
T PRK13917 314 SDV-EK---ADESQFANVRGYYKYGELLKNKV 341 (344)
T ss_pred CCe-EE---cCChHHHHHHHHHHHHHHHhccc
Confidence 864 44 69999999999999999777654
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.62 E-value=8.5e-15 Score=150.33 Aligned_cols=311 Identities=16% Similarity=0.142 Sum_probs=187.4
Q ss_pred CceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCC----cceecHhHhhhhhcCcCchhhcch
Q 036352 86 GNVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNG----ESWVGRQANMMTSLYPSRALFDTK 161 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~----~~~~G~~A~~~~~~~~~~~~~~~k 161 (493)
..+|-||+|+.++++++..+..|..+ +||++....+. ...+|.++... .+... +.
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v---------------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~---~~ 62 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV---------------IPSVVGRPRDKNSSNDYYVGDEALSP---RSNLE---LR 62 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE---------------EESEEEEESSSSSSSSCEETHHHHHT---GTGEE---EE
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc---------------CCCccccccccccceeEEeecccccc---hhhee---ee
Confidence 35899999999999999766666543 68887765432 45788774321 00000 00
Q ss_pred hhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHH
Q 036352 162 HLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREA 241 (493)
Q Consensus 162 ~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~ 241 (493)
.|++ +| .+...+.+..+++++..... ........++++.|..++...|+.
T Consensus 63 ---------------~p~~-----~g---------~i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 63 ---------------SPIE-----NG---------VIVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp ---------------ESEE-----TT---------EESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHH
T ss_pred ---------------eecc-----cc---------cccccccccccccccccccc-ccccccceeeeeccccCCchhhhh
Confidence 1111 22 44556667777777765431 112244679999999999999998
Q ss_pred HHHH-HHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 036352 242 IKYA-GDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVR 319 (493)
Q Consensus 242 l~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~ 319 (493)
+.+. ++..+++.+.++.+|.+++++++.. +-+|||+| +.|.++-+ -++.. +.......++||.++++.|.+
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~----tglVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~lt~~l~~ 185 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGRT----TGLVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDLTEYLKE 185 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTBS----SEEEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHHHHHHHH
T ss_pred hhhhhhcccccceeeeeecccccccccccc----cccccccceeeeeeeee--eeccc-cccccccccccHHHHHHHHHH
Confidence 8774 7788999999999999999999855 67999999 98888654 34432 111222368999999999998
Q ss_pred HHHHHH-h--hhccCCCC----CCHHHHHHHHHHHHHHHHHcC---------------CCCceEEEEecccchhhhcccc
Q 036352 320 HLWREF-T--RCHAFDAS----HYPLVLQRFLGAAERAKVRLS---------------SEPQVEVKLHNLLNIQVKKSLV 377 (493)
Q Consensus 320 ~l~~~~-~--~~~~~~~~----~~~~~~~rL~~~~e~~K~~Ls---------------~~~~~~~~i~~~~~~~~~~~~~ 377 (493)
.|..+- . ..+..... ...-....-....+.+|+.+. ......+.+| ++
T Consensus 186 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg------- 255 (393)
T PF00022_consen 186 LLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DG------- 255 (393)
T ss_dssp HHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TS-------
T ss_pred HHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---cc-------
Confidence 888741 0 00000000 001111112234445554432 1222333332 21
Q ss_pred ccceEEEEcHHHHH--H-HHHHHH------------HHHHHHHHHHHHHcCCCCC--CCCEEEEecCCCCcHHHHHHHHH
Q 036352 378 QKDLEVTITRSEFE--S-LVSELI------------EETGAICQKCLEVANITRK--DLDGILVVGGLGCVPSVREYMEL 440 (493)
Q Consensus 378 ~~~~~~~itr~~~e--~-~~~~~i------------~~i~~~i~~~l~~~~~~~~--~i~~VvLvGG~s~~p~v~~~l~~ 440 (493)
. .+.+..+.+. + ++.|.. ..+.++|.+++..+..+.. -.+.|+|+||+|++|++.++|..
T Consensus 256 -~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~ 332 (393)
T PF00022_consen 256 -Q--TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQ 332 (393)
T ss_dssp -S--EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHH
T ss_pred -c--ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHH
Confidence 2 5566654442 2 222221 1577888899988754411 13899999999999999999988
Q ss_pred HhCC--------CCCCCCCCC-ChhHHHHhhHHHHHhhh
Q 036352 441 FFGK--------SPLKSPRGV-TPDEAVVIGAAIHGEKF 470 (493)
Q Consensus 441 ~fg~--------~~~~~~~~~-~p~~aVA~GAa~~a~~~ 470 (493)
.+.. ++.. +. +|..++=.||+++|..-
T Consensus 333 eL~~~~~~~~~~~v~~---~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 333 ELRSLLPSSTKVKVIA---PPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHHSGTTSTEEEE-----T-TTTSHHHHHHHHHHTSG
T ss_pred Hhhhhhhccccceecc---Cchhhhhcccccceeeeccc
Confidence 7722 1222 34 89999999999999863
No 40
>PTZ00466 actin-like protein; Provisional
Probab=99.62 E-value=1.9e-14 Score=146.06 Aligned_cols=305 Identities=14% Similarity=0.119 Sum_probs=190.6
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccC---------CcceecHhHhhhhhcCcCchh
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPN---------GESWVGRQANMMTSLYPSRAL 157 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~---------~~~~~G~~A~~~~~~~~~~~~ 157 (493)
..|.||+|+.++++++..+..|.++ +||++....+ +...+|.++.... ..
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~---------------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~------~~ 71 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV---------------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR------GL 71 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe---------------ccceeeeecCccccccCCCCCeEECchhhhhC------cC
Confidence 3788999999999999877777644 5666654322 2345566553210 00
Q ss_pred hcchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHH
Q 036352 158 FDTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEA 237 (493)
Q Consensus 158 ~~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~ 237 (493)
..+. .|++ +| .+...+.+..+++++.+... .......+++|-|..++..
T Consensus 72 ~~l~---------------~Pi~-----~G---------~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~ 120 (380)
T PTZ00466 72 LKVT---------------YPIN-----HG---------IIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQK 120 (380)
T ss_pred ceeC---------------cccc-----CC---------eECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHH
Confidence 0000 1221 33 56667777777787764321 1223467899999999999
Q ss_pred HHHHHHH-HHHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 036352 238 QREAIKY-AGDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDL 315 (493)
Q Consensus 238 ~r~~l~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~ 315 (493)
+|+.+-+ .++..+++.+.+..+|.+++++++. .+-+|||+| +.|.++-+. +|..-.-+ ....++||.++++
T Consensus 121 ~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----~tglVVD~G~~~t~v~PV~--~G~~~~~~-~~~~~~GG~~lt~ 193 (380)
T PTZ00466 121 NKEKIAEVFFETFNVPALFISIQAILSLYSCGK----TNGTVLDCGDGVCHCVSIY--EGYSITNT-ITRTDVAGRDITT 193 (380)
T ss_pred HHHHHHHHHhccCCCCeEEEecchHHHHHhcCC----ceEEEEeCCCCceEEEEEE--CCEEeecc-eeEecCchhHHHH
Confidence 9999877 5778899999999999999998874 478999999 998885443 44322222 2236899999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc-----------eEEEEecccchhhhccccccceEEE
Q 036352 316 LLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQ-----------VEVKLHNLLNIQVKKSLVQKDLEVT 384 (493)
Q Consensus 316 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~ 384 (493)
.|.+.|.+. +..... . .-++.++.+|+.++-... .....++..+ ....+.
T Consensus 194 ~L~~lL~~~-----~~~~~~--~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LP---------dg~~i~ 254 (380)
T PTZ00466 194 YLGYLLRKN-----GHLFNT--S---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILP---------DGSQIL 254 (380)
T ss_pred HHHHHHHhc-----CCCCCc--H---HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECC---------CCcEEE
Confidence 999887542 111111 1 112446667776542100 0000111111 122456
Q ss_pred EcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEecCCCCcHHHHHHHHHHhCC----CC-CCC
Q 036352 385 ITRSEF---ESLVSELI-----EETGAICQKCLEVANIT--RKDLDGILVVGGLGCVPSVREYMELFFGK----SP-LKS 449 (493)
Q Consensus 385 itr~~~---e~~~~~~i-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~fg~----~~-~~~ 449 (493)
+..+.| |-+++|.+ ..+.++|.+.+.+++.+ ..-...|+|+||+|.+|++.++|...+.. .. ..+
T Consensus 255 l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v 334 (380)
T PTZ00466 255 IGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRI 334 (380)
T ss_pred EchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEE
Confidence 666555 23444422 25677888888877544 33348999999999999999999988721 10 111
Q ss_pred CCCCChhHHHHhhHHHHHhh
Q 036352 450 PRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 450 ~~~~~p~~aVA~GAa~~a~~ 469 (493)
..+.++..++=+|++++|..
T Consensus 335 ~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 335 SAPPERKFSTFIGGSILASL 354 (380)
T ss_pred ecCCCCceeEEECchhhcCc
Confidence 12456677777899999874
No 41
>PTZ00004 actin-2; Provisional
Probab=99.61 E-value=2.7e-14 Score=145.23 Aligned_cols=302 Identities=16% Similarity=0.126 Sum_probs=189.1
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCC---------cceecHhHhhhhhcCcCchh
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNG---------ESWVGRQANMMTSLYPSRAL 157 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~---------~~~~G~~A~~~~~~~~~~~~ 157 (493)
..|.||+|+.++++++..++.|.++ +||++....+. ...+|+++... .. .
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~~~---------------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~-~ 65 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPRCV---------------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-----RG-I 65 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCEE---------------ccceeEEecccccccCcCCCceEECchhhcc-----cc-c
Confidence 4799999999999999876666543 67776654321 23456554321 00 0
Q ss_pred hcchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHH
Q 036352 158 FDTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEA 237 (493)
Q Consensus 158 ~~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~ 237 (493)
..++ .|++ +| .+...+.+..+++++...-.. .......+++|.|..++..
T Consensus 66 ~~l~---------------~Pi~-----~G---------~i~d~d~~e~i~~~~~~~~l~-v~~~~~pvllte~~~~~~~ 115 (378)
T PTZ00004 66 LTLK---------------YPIE-----HG---------IVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKA 115 (378)
T ss_pred ceEc---------------ccCc-----CC---------EEcCHHHHHHHHHHHHHhhcc-cCCccCcceeecCCCCcHH
Confidence 0011 1221 33 455566777777775432111 1223467889999999999
Q ss_pred HHHHHHH-HHHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 036352 238 QREAIKY-AGDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDL 315 (493)
Q Consensus 238 ~r~~l~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~ 315 (493)
+|+.+.+ .++..+++.+.+..+|.+++++++. .+-+|||+| +.|+++-+. +|..-..+.. ..++||.++|+
T Consensus 116 ~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----~tglVVDiG~~~t~v~pV~--dG~~l~~~~~-~~~~GG~~lt~ 188 (378)
T PTZ00004 116 NREKMTQIMFETHNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPIY--EGYSLPHAIH-RLDVAGRDLTE 188 (378)
T ss_pred HHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----ceEEEEECCCCcEEEEEEE--CCEEeeccee-eecccHHHHHH
Confidence 9988877 4778899999999999999998874 477999999 998886543 3432222233 36899999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCC-----------------ceEEEEecccchhhhccccc
Q 036352 316 LLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEP-----------------QVEVKLHNLLNIQVKKSLVQ 378 (493)
Q Consensus 316 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~-----------------~~~~~i~~~~~~~~~~~~~~ 378 (493)
.|.+.|... +..+.. .. -...++++|+.++... ...+.+| ++
T Consensus 189 ~L~~lL~~~-----~~~~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP---dg-------- 247 (378)
T PTZ00004 189 YMMKILHER-----GTTFTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP---DG-------- 247 (378)
T ss_pred HHHHHHHhc-----CCCCCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC---CC--------
Confidence 999987543 111111 11 1234566666653211 1112221 11
Q ss_pred cceEEEEcHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC--CCCCCEEEEecCCCCcHHHHHHHHHHhCC---
Q 036352 379 KDLEVTITRSEFE---SLVSEL------IEETGAICQKCLEVANIT--RKDLDGILVVGGLGCVPSVREYMELFFGK--- 444 (493)
Q Consensus 379 ~~~~~~itr~~~e---~~~~~~------i~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~fg~--- 444 (493)
. .+.+..+.|. -+++|. ...+.++|.+++.+++.+ ..-.+.|+|+||+|.+|++.++|...+..
T Consensus 248 ~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p 325 (378)
T PTZ00004 248 T--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAP 325 (378)
T ss_pred C--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCC
Confidence 2 4555555442 244443 345678888888877544 22348999999999999999999988731
Q ss_pred -C-CCCCCCCCChhHHHHhhHHHHHhh
Q 036352 445 -S-PLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 445 -~-~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
. ...+..+.++..++=+|++++|..
T Consensus 326 ~~~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 326 STMKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred CCccEEEecCCCCceeEEECcccccCc
Confidence 1 011111456777788899999874
No 42
>PTZ00281 actin; Provisional
Probab=99.60 E-value=2.2e-14 Score=145.77 Aligned_cols=306 Identities=16% Similarity=0.134 Sum_probs=189.3
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEccCC---------cceecHhHhhhhhcCcCchh
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNG---------ESWVGRQANMMTSLYPSRAL 157 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~---------~~~~G~~A~~~~~~~~~~~~ 157 (493)
..|.||+|+.++++++..+..|..+ +||++....++ ...+|+++... +..
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i---------------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~------~~~ 65 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAV---------------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSK------RGI 65 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCee---------------ccccceeecCcccccCcccCCeEECchhhcc------ccC
Confidence 3799999999999999877777643 56666543221 23455554311 000
Q ss_pred hcchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHH
Q 036352 158 FDTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEA 237 (493)
Q Consensus 158 ~~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~ 237 (493)
..+ ..|++ +| .+...+.+..+++++..... ........+++|-|..++..
T Consensus 66 ~~l---------------~~Pi~-----~G---------~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~ 115 (376)
T PTZ00281 66 LTL---------------KYPIE-----HG---------IVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKA 115 (376)
T ss_pred cEE---------------eccCc-----CC---------EEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHH
Confidence 000 01221 33 45666777777777664211 12223468899999999999
Q ss_pred HHHHHHH-HHHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 036352 238 QREAIKY-AGDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDL 315 (493)
Q Consensus 238 ~r~~l~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~ 315 (493)
+|+.|.+ .++..+++.+.+..+|.+++++++. .+-+|||+| +.|.++-+.- |..-. ......++||.++++
T Consensus 116 ~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~----~tglVVDiG~~~t~v~PV~d--G~~~~-~~~~~~~~GG~~lt~ 188 (376)
T PTZ00281 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----TTGIVMDSGDGVSHTVPIYE--GYALP-HAILRLDLAGRDLTD 188 (376)
T ss_pred HHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----ceEEEEECCCceEEEEEEEe--cccch-hheeeccCcHHHHHH
Confidence 9999988 5788899999999999999998774 478999999 9988764432 22111 122236899999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc------------eEEEEecccchhhhccccccceEE
Q 036352 316 LLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQ------------VEVKLHNLLNIQVKKSLVQKDLEV 383 (493)
Q Consensus 316 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~ 383 (493)
.|.+.|... +..... . . -+..++++|+.++-... ......+..+ ....+
T Consensus 189 ~L~~lL~~~-----~~~~~~-~-~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LP---------dg~~i 249 (376)
T PTZ00281 189 YMMKILTER-----GYSFTT-T-A---EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP---------DGQVI 249 (376)
T ss_pred HHHHHHHhc-----CCCCCc-H-H---HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECC---------CCCEE
Confidence 999887553 111111 1 1 12446777777542110 0000111111 11245
Q ss_pred EEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEecCCCCcHHHHHHHHHHhCC----C-CCC
Q 036352 384 TITRSEF---ESLVSELI-----EETGAICQKCLEVANIT--RKDLDGILVVGGLGCVPSVREYMELFFGK----S-PLK 448 (493)
Q Consensus 384 ~itr~~~---e~~~~~~i-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~fg~----~-~~~ 448 (493)
.+..+.| |-+++|.+ ..+.++|.+.+..++.+ ..-.+.|+|+||+|.+|++.++|+..+.. . ...
T Consensus 250 ~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~ 329 (376)
T PTZ00281 250 TIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIK 329 (376)
T ss_pred EeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceE
Confidence 5555443 23444422 25677888888877544 22348999999999999999999988721 1 011
Q ss_pred CCCCCChhHHHHhhHHHHHhh
Q 036352 449 SPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 449 ~~~~~~p~~aVA~GAa~~a~~ 469 (493)
+..+.++..++=+|++++|..
T Consensus 330 v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 330 IIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred EecCCCCceeEEECcccccCc
Confidence 112457778888999999974
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.53 E-value=2.5e-12 Score=129.87 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHcCCCeeeeccchHHHHHHhc-----cc-CC-CC-eEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCC
Q 036352 236 EAQREAIKYAGDIAGLDIQGVVEDPVAAALAYG-----LD-KR-DG-LFAVYSFG-GTFEFSILEISNGVIKVKAKRKSL 306 (493)
Q Consensus 236 ~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~-----~~-~~-~~-~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~ 306 (493)
....+.+.++++.+|++...+..+|.|.+-.+. .. .. .. .++++|+| ++|+++++.-+... ..+..
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~-----~~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML-----FTREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE-----EEEEe
Confidence 456888899999999999999999999987663 11 11 33 49999999 99999999655444 35558
Q ss_pred CCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEc
Q 036352 307 SHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTIT 386 (493)
Q Consensus 307 ~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~it 386 (493)
++||.+|++.+.+.+ +++ ...||+.|...+... . .
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~-----------~--------~------- 251 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPL-----------L--------Y------- 251 (348)
T ss_pred echHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCC-----------c--------h-------
Confidence 899999999987543 222 267888887532110 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCC--------------
Q 036352 387 RSEFESLVSELIEETGAICQKCLEVA--NITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSP-------------- 450 (493)
Q Consensus 387 r~~~e~~~~~~i~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~-------------- 450 (493)
-.+++++.++++...|.+.|+-. ......++.|+|+||+++++++.+.+++.||.++....
T Consensus 252 ---~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~ 328 (348)
T TIGR01175 252 ---DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAG 328 (348)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHH
Confidence 12356677777777777777643 12234689999999999999999999999986554310
Q ss_pred --CCCChhHHHHhhHHHHH
Q 036352 451 --RGVTPDEAVVIGAAIHG 467 (493)
Q Consensus 451 --~~~~p~~aVA~GAa~~a 467 (493)
...+|..++|.|+|+++
T Consensus 329 ~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 329 RLAVDAPALMTALGLALRG 347 (348)
T ss_pred HHHhhhHHHHHHhhHhhcC
Confidence 01356778899988875
No 44
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.51 E-value=1.4e-12 Score=125.27 Aligned_cols=324 Identities=14% Similarity=0.097 Sum_probs=188.7
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEEEccCCCccccCCCcccceEEEEc----c----CCcceecHhHhhhhhcCcCchhh
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVIEEVEGGRYTKKSFRSMPSVVFFK----P----NGESWVGRQANMMTSLYPSRALF 158 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~----~----~~~~~~G~~A~~~~~~~~~~~~~ 158 (493)
..|.||.|+..++++|...+.|+.+ +||++... . .+...++..|... |..- .
T Consensus 12 ~alViDpGS~~traGyaged~Pk~i---------------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~~----pr~g-m 71 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAI---------------LPSVYGKVTKTDGDAEDKKGYYVDENAIHV----PRPG-M 71 (426)
T ss_pred ceEEEeCCCceEeccccCCCCcccc---------------ccceeeeeecccCccccccceEeechhccC----CCCC-C
Confidence 4899999999999999877777654 68877641 1 1123555544321 1100 0
Q ss_pred cchhhhCCCCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHH
Q 036352 159 DTKHLVGTVYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQ 238 (493)
Q Consensus 159 ~~k~~lg~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~ 238 (493)
..+..+ +|| .+...|++.+.++|.++.... .+.....+++|-|++-+.+.
T Consensus 72 Ev~~~i--------------------~nG---------lv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~ 121 (426)
T KOG0679|consen 72 EVKTPI--------------------KNG---------LVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRAN 121 (426)
T ss_pred eeccch--------------------hcC---------CcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHH
Confidence 011111 123 567788888888888754332 23334689999999988999
Q ss_pred HHHHHH-HHHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHH
Q 036352 239 REAIKY-AGDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLL 316 (493)
Q Consensus 239 r~~l~~-a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~ 316 (493)
|+.+.+ +++...++...++.+|+++|++.+ ..+.+|||+| ++|.++-+ .+|..-..+... .++||+.|+..
T Consensus 122 Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----rstalVvDiGa~~~svsPV--~DG~Vlqk~vvk-s~laGdFl~~~ 194 (426)
T KOG0679|consen 122 REKLTELMFEKLNVPAFYLAKTAVCTAFANG----RSTALVVDIGATHTSVSPV--HDGYVLQKGVVK-SPLAGDFLNDQ 194 (426)
T ss_pred HHHHHHHHHhhcCCceEEEechHHHHHHhcC----CCceEEEEecCCCceeeee--ecceEeeeeeEe-cccchHHHHHH
Confidence 998877 578889999999999999999988 4589999999 99887643 456554555555 68999999999
Q ss_pred HHHHHHHHHh---------hhccCCCCCC--------H----HHH--HHHHHHHHHHHHHcCCCCceEEE------Ee--
Q 036352 317 LVRHLWREFT---------RCHAFDASHY--------P----LVL--QRFLGAAERAKVRLSSEPQVEVK------LH-- 365 (493)
Q Consensus 317 l~~~l~~~~~---------~~~~~~~~~~--------~----~~~--~rL~~~~e~~K~~Ls~~~~~~~~------i~-- 365 (493)
+.+.|..+.. ++........ . +.+ .......++.|+.+......+++ ++
T Consensus 195 ~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~ 274 (426)
T KOG0679|consen 195 CRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTK 274 (426)
T ss_pred HHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCc
Confidence 9998877622 1111111110 1 111 11223455667766544332221 11
Q ss_pred -cccchhhhccccccceEEEEcHHHHHH-HHH------------HHHHHHHHHHHHHHHHcCCC--CCCCCEEEEecCCC
Q 036352 366 -NLLNIQVKKSLVQKDLEVTITRSEFES-LVS------------ELIEETGAICQKCLEVANIT--RKDLDGILVVGGLG 429 (493)
Q Consensus 366 -~~~~~~~~~~~~~~~~~~~itr~~~e~-~~~------------~~i~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s 429 (493)
+.+.+......|-. .+.|....|.- .++ +.+-.+.+++...+..++.+ ..-...|+++||.|
T Consensus 275 ~~efP~g~~~~~G~e--r~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtS 352 (426)
T KOG0679|consen 275 HFEFPDGYTLDFGAE--RFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTS 352 (426)
T ss_pred cccCCCCcccccCcc--eeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecCcc
Confidence 11111000011111 12333222220 000 11112234444444444332 23348999999999
Q ss_pred CcHHHHHHHHHHhCC--CCCCC-----CCCCChhHHHHhhHHHHHhh
Q 036352 430 CVPSVREYMELFFGK--SPLKS-----PRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 430 ~~p~v~~~l~~~fg~--~~~~~-----~~~~~p~~aVA~GAa~~a~~ 469 (493)
.|+++.++|.+.+.+ +..++ -...+-..++=+|+-++|..
T Consensus 353 liqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILASL 399 (426)
T KOG0679|consen 353 LIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILASL 399 (426)
T ss_pred hhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhcc
Confidence 999999999988732 11110 01234445566788887764
No 45
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.45 E-value=5.1e-12 Score=125.67 Aligned_cols=203 Identities=18% Similarity=0.166 Sum_probs=129.1
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCCeeeeccchHHHHHHhcccC-----CCCeEEEEEeC-CeeE
Q 036352 222 SATKAVISVPACFNEAQREAIKYAGDIA---------GLDIQGVVEDPVAAALAYGLDK-----RDGLFAVYSFG-GTFE 286 (493)
Q Consensus 222 ~~~~vvitVP~~~~~~~r~~l~~a~~~a---------Gl~~~~li~Ep~Aaa~~~~~~~-----~~~~vlVvDiG-gTtd 286 (493)
.+..+|+..|..+...+++.+++.+... -+..+.+++||.+|.+.+..+. ....++|||+| +|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999988999998886532 3456788999999988776532 25678999999 9999
Q ss_pred EEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEec
Q 036352 287 FSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHN 366 (493)
Q Consensus 287 vsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~ 366 (493)
+.+++ +..+ +....++.+.|...+-+.+.+.+.++ ++.....+.. ..+++ |..... ..+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~----~g~~~~~~~~-------~i~~~---l~~g~~--~~~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKD----IGTPAYRDID-------RIDLA---LRTGKQ--PRI-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhh----cCCCCccCHH-------HHHHH---HHhCCc--eee--
Confidence 97764 3333 23345557789888888888777766 4544111111 22221 111100 000
Q ss_pred ccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCC-
Q 036352 367 LLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKS- 445 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~- 445 (493)
. + . .+.|+ ++.+.....++++...+.+.+. ...+++.|+|+||++. .+++.|++.|+..
T Consensus 240 -~-g--------k--~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~ 299 (320)
T TIGR03739 240 -Y-Q--------K--PVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHR 299 (320)
T ss_pred -c-c--------e--ecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCe
Confidence 0 1 1 12222 2222333444444444444332 1245889999999996 6789999999764
Q ss_pred CCCCCCCCChhHHHHhhHHHHHh
Q 036352 446 PLKSPRGVTPDEAVVIGAAIHGE 468 (493)
Q Consensus 446 ~~~~~~~~~p~~aVA~GAa~~a~ 468 (493)
+.. ..||..|.|+|-..+|.
T Consensus 300 i~~---~~dp~~ANarG~~~~g~ 319 (320)
T TIGR03739 300 IVE---VDEPMFANVRGFQIAGL 319 (320)
T ss_pred eEe---cCCcHHHHHHHHHHhhc
Confidence 334 68999999999988764
No 46
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.44 E-value=4.3e-13 Score=134.62 Aligned_cols=200 Identities=21% Similarity=0.250 Sum_probs=125.5
Q ss_pred HHHHHHHHhCCCCCcEEE--------------------EeCCCCCHHHHHHHHHHHHHcCCCeeeeccchHHHHHHhccc
Q 036352 211 MRAIGEVYLKESATKAVI--------------------SVPACFNEAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLD 270 (493)
Q Consensus 211 l~~~~~~~~~~~~~~vvi--------------------tVP~~~~~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~ 270 (493)
+...++++++.+..++++ ++| ....+...++++.+|++...+--+|.|.+..+...
T Consensus 94 I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~ 169 (340)
T PF11104_consen 94 IRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFL 169 (340)
T ss_dssp HHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHH
T ss_pred HHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHH
Confidence 445667777765554443 333 35577778899999999988888888876655442
Q ss_pred C-----C--CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHH
Q 036352 271 K-----R--DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQR 342 (493)
Q Consensus 271 ~-----~--~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~r 342 (493)
. . .+.++++|+| .+|.+.++.-+... ..+...+||.++++.+.+.+.-.+
T Consensus 170 ~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~-----f~R~i~~G~~~l~~~i~~~~~i~~----------------- 227 (340)
T PF11104_consen 170 EPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI-----FSRSIPIGGNDLTEAIARELGIDF----------------- 227 (340)
T ss_dssp HHTST----T-EEEEEEE-SS-EEEEEEETTEEE-----EEEEES-SHHHHHHHHHHHTT--H-----------------
T ss_pred HHhCCcccccceEEEEEecCCeEEEEEEECCEEE-----EEEEEeeCHHHHHHHHHHhcCCCH-----------------
Confidence 1 1 4689999999 99999888644333 345579999999999997754332
Q ss_pred HHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCC
Q 036352 343 FLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKCLEVA--NITRKDLD 420 (493)
Q Consensus 343 L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~--~~~~~~i~ 420 (493)
.++|..|..-+ ++ .+...+.+++.++++...|.+.++-. ......|+
T Consensus 228 --~~Ae~~k~~~~--------l~---------------------~~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~ 276 (340)
T PF11104_consen 228 --EEAEELKRSGG--------LP---------------------EEYDQDALRPFLEELAREIRRSLDFYQSQSGGESIE 276 (340)
T ss_dssp --HHHHHHHHHT-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------S
T ss_pred --HHHHHHHhcCC--------CC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 66777777521 00 02234556666777777777776632 22355799
Q ss_pred EEEEecCCCCcHHHHHHHHHHhCCCCCCCC------CCC----------ChhHHHHhhHHHHH
Q 036352 421 GILVVGGLGCVPSVREYMELFFGKSPLKSP------RGV----------TPDEAVVIGAAIHG 467 (493)
Q Consensus 421 ~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~------~~~----------~p~~aVA~GAa~~a 467 (493)
.|+|+||++++++|.+.|++.++.++.... .+. .|..++|.|+|+.+
T Consensus 277 ~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 277 RIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp EEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 999999999999999999999986554310 011 37789999999874
No 47
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=8.9e-10 Score=104.81 Aligned_cols=177 Identities=17% Similarity=0.173 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHcCCCeeeeccchHHHHHHhcccC-----C--CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCc
Q 036352 238 QREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDK-----R--DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHG 309 (493)
Q Consensus 238 ~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~-----~--~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~G 309 (493)
..+...++++.||++...+--|..|.-.+|..-. + ...++|+|+| ..+.+.++.-+... +....++|
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l-----y~r~~~~g 224 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL-----YTREVPVG 224 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee-----eEeeccCc
Confidence 3455677899999999888889998877765221 1 3347899999 99999998866666 46668999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHH
Q 036352 310 GLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSE 389 (493)
Q Consensus 310 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~ 389 (493)
|+.+++.+.+. ++++. ..++.+|....... +-
T Consensus 225 ~~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~-----------------------------~y 256 (354)
T COG4972 225 TDQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT-----------------------------DY 256 (354)
T ss_pred HHHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC-----------------------------ch
Confidence 99999998865 33333 56777887643222 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCC----------------CC
Q 036352 390 FESLVSELIEETGAICQKCLEVA--NITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKS----------------PR 451 (493)
Q Consensus 390 ~e~~~~~~i~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~----------------~~ 451 (493)
-.+.+.++++++.+.|.+.|+.. .-...+|+.|+|.||++.+-++.+++.+.++.+.... ..
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanPf~~~~~~~~v~k~~l~ 336 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANPFAYMALNVKVNKGYLQ 336 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCHHHHHhhhhcccccccc
Confidence 13455666666666666666643 2235578999999999999999999999987655441 11
Q ss_pred CCChhHHHHhhHHHHH
Q 036352 452 GVTPDEAVVIGAAIHG 467 (493)
Q Consensus 452 ~~~p~~aVA~GAa~~a 467 (493)
..-|...+|.|.|+.+
T Consensus 337 ~dap~l~ia~GLAlRg 352 (354)
T COG4972 337 TDAPALTIALGLALRG 352 (354)
T ss_pred ccchHHHHHhhhhhhc
Confidence 2345566677766654
No 48
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.23 E-value=3.7e-10 Score=115.55 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=121.9
Q ss_pred EEEEcCCccEEEEEEeCCceEEE-EccCCCccccCCCcc-cceEEEEccCCcceecHhHhhhhhcCcCchhhcchhhhCC
Q 036352 89 LGIDLGTTYSRVAVMQGEDPVVI-EEVEGGRYTKKSFRS-MPSVVFFKPNGESWVGRQANMMTSLYPSRALFDTKHLVGT 166 (493)
Q Consensus 89 vGIDlGTt~s~va~~~~~~~~vi-~~~~g~~~~~~~~~~-iPS~i~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~ 166 (493)
|.||.||..+++++..+..|..+ .+..+.+ . ..++..-...+...+|.++...... +.. .++
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~-------~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~---~~~----- 72 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRR-------RDEDSVMEDTEEKDTYVGNEAQNDRDN-SLL---ELR----- 72 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccc-------cccccccccccccccccCchhhhccCC-ccc---eee-----
Confidence 99999999999999988888655 3333333 1 1222111122344556555421110 000 000
Q ss_pred CCCCchhhcccCCeEEeCCCCceEEEeCCeEeCHHHHHHHHHHHHHHHH-HHHhCCCCCcEEEEeCCCCCHHHHHHHHH-
Q 036352 167 VYDSSKVQTSLYPKIVRGFKGEAWVETEFGIFSPAKIQAFILAKMRAIG-EVYLKESATKAVISVPACFNEAQREAIKY- 244 (493)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~v~~~~L~~l~~~~-~~~~~~~~~~vvitVP~~~~~~~r~~l~~- 244 (493)
.|. .+| .+...+.+..+++++.... ..........+++|.|..+....|+.+-+
T Consensus 73 ----------~p~-----~~g---------~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 73 ----------YPI-----ENG---------IILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred ----------ccc-----ccC---------ccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 011 122 4555666677777766553 11112234689999999999999998876
Q ss_pred HHHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 036352 245 AGDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWR 323 (493)
Q Consensus 245 a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~ 323 (493)
.++...++.+.+..++.++.++.+.. ..+.+|+|+| +.|+++=+- ++..--. ......+||++++..|.+.|..
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g~~--~~~g~ViD~G~~~t~v~PV~--DG~~l~~-a~~ri~~gG~~it~~l~~lL~~ 203 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASGSS--DETGLVIDSGDSVTHVIPVV--DGIVLPK-AVKRIDIGGRDITDYLKKLLRE 203 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcCCC--CCceEEEEcCCCceeeEeee--ccccccc-cceeeecCcHHHHHHHHHHHhh
Confidence 57888999999999999998887754 2478999999 999986443 3322111 2233789999999999998887
Q ss_pred H
Q 036352 324 E 324 (493)
Q Consensus 324 ~ 324 (493)
.
T Consensus 204 ~ 204 (444)
T COG5277 204 K 204 (444)
T ss_pred c
Confidence 4
No 49
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.20 E-value=5.8e-10 Score=110.70 Aligned_cols=173 Identities=17% Similarity=0.121 Sum_probs=99.6
Q ss_pred CCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhh
Q 036352 251 LDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRC 328 (493)
Q Consensus 251 l~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~ 328 (493)
+..+.+++|+.||.+.+..... ...++|||+| +|+|++++.- +.-.+....+...+|-..+.+.+.+.|...
T Consensus 140 I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~---- 213 (318)
T PF06406_consen 140 IKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA---- 213 (318)
T ss_dssp EEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT------
T ss_pred EeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh----
Confidence 3567889999999998876644 5689999999 9999998852 211122244556789988888888776552
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q 036352 329 HAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKC 408 (493)
Q Consensus 329 ~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~ 408 (493)
+... +. ..++++-.... +... +.....+ . -..+++.++++..++++.+.|.+.
T Consensus 214 -~~~~--s~-------~~~~~ii~~~~--~~~~--~~~~i~~--------~-----~~~~~v~~~i~~~~~~l~~~i~~~ 266 (318)
T PF06406_consen 214 -GIDT--SE-------LQIDDIIRNRK--DKGY--LRQVIND--------E-----DVIDDVSEVIEEAVEELINRILRE 266 (318)
T ss_dssp -SBHH--HH-------HHHHHHHHTTT---HHH--HHHHSSS--------H-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCC--cH-------HHHHHHHHhhh--ccce--ecccccc--------h-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00 01111110000 0000 0000000 0 013445555666666666666665
Q ss_pred HHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCC---CCCCCCCCCChhHHHHhhHHH
Q 036352 409 LEVANITRKDLDGILVVGGLGCVPSVREYMELFFGK---SPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 409 l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~---~~~~~~~~~~p~~aVA~GAa~ 465 (493)
+.+ ..+++.|+|+||++ ..+.+.|++.|+. .+.. ..||+.|.|.|-+-
T Consensus 267 ~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i---~~~pqfAnv~G~~~ 317 (318)
T PF06406_consen 267 LGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVI---VDDPQFANVRGFYK 317 (318)
T ss_dssp HTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE-----SSGGGHHHHHHHH
T ss_pred Hhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEE---CCCchhhHHHHHhc
Confidence 543 34678999999998 5789999999973 4555 78999999999753
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.95 E-value=2.6e-09 Score=107.58 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=63.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHH------------cCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEE
Q 036352 224 TKAVISVPACFNEAQREAIKYAGDI------------AGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSIL 290 (493)
Q Consensus 224 ~~vvitVP~~~~~~~r~~l~~a~~~------------aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~ 290 (493)
.-.+||-++ ..+++++++++. ||++...++. |.|++.+.+.+.++..++++|+| |||+++++
T Consensus 89 ~ahIITg~~----~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLseEke~gVa~IDIGgGTT~iaVf 163 (475)
T PRK10719 89 GAVIITGET----ARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSEERNTRVLNIDIGGGTANYALF 163 (475)
T ss_pred cEEEEEech----hHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhhhccCceEEEEeCCCceEEEEE
Confidence 456777775 467778888886 6776666655 99999988866448899999999 99999999
Q ss_pred EEeCCeEEEEEecCCCCCchHHHHHH
Q 036352 291 EISNGVIKVKAKRKSLSHGGLDFDLL 316 (493)
Q Consensus 291 ~~~~~~~~vl~~~~~~~~GG~~id~~ 316 (493)
+-+... +.+..++||++++..
T Consensus 164 ~~G~l~-----~T~~l~vGG~~IT~D 184 (475)
T PRK10719 164 DAGKVI-----DTACLNVGGRLIETD 184 (475)
T ss_pred ECCEEE-----EEEEEecccceEEEC
Confidence 765544 455589999988764
No 51
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.88 E-value=3.2e-07 Score=99.87 Aligned_cols=323 Identities=17% Similarity=0.214 Sum_probs=194.2
Q ss_pred eecHhHhhhhhc----CcCchhhcchhhhCC--------CCCCchhhcc-------cCCeEEeCCCCceEEEe-C-----
Q 036352 140 WVGRQANMMTSL----YPSRALFDTKHLVGT--------VYDSSKVQTS-------LYPKIVRGFKGEAWVET-E----- 194 (493)
Q Consensus 140 ~~G~~A~~~~~~----~~~~~~~~~k~~lg~--------~~~~~~~~~~-------~p~~~~~~~~g~~~~~~-~----- 194 (493)
.+|.+|...+.. .....+.++||+|-. .|+....... .|+...-+++|.+.+.. .
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 688888765432 233447789998854 2332221111 34444445677776655 1
Q ss_pred ---CeEeCHHHHHHHHHHHHHHHHHHHhCC--------------CCCcEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 036352 195 ---FGIFSPAKIQAFILAKMRAIGEVYLKE--------------SATKAVISVPACFNEAQREAIKYAGDIA-------- 249 (493)
Q Consensus 195 ---~~~~~~~~v~~~~L~~l~~~~~~~~~~--------------~~~~vvitVP~~~~~~~r~~l~~a~~~a-------- 249 (493)
.-.++-.-++..+|..|+.+|.-+++. ....+++|+|+-....+|+.+++.++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 125667788888888888888766655 2468999999999999999998887755
Q ss_pred CCC--------------------eeee-ccchHHHHHHhcccC--------------------C----------CCeEEE
Q 036352 250 GLD--------------------IQGV-VEDPVAAALAYGLDK--------------------R----------DGLFAV 278 (493)
Q Consensus 250 Gl~--------------------~~~l-i~Ep~Aaa~~~~~~~--------------------~----------~~~vlV 278 (493)
|.. .+.+ -+|+++.=+-|+++. + .-.|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 421 1111 256666544444331 0 337899
Q ss_pred EEeC-CeeEEEEEEEe--CC--e-EEE----EEecCCCCCchHHHHHHHHHH-HHHHHhhh---ccC-------------
Q 036352 279 YSFG-GTFEFSILEIS--NG--V-IKV----KAKRKSLSHGGLDFDLLLVRH-LWREFTRC---HAF------------- 331 (493)
Q Consensus 279 vDiG-gTtdvsv~~~~--~~--~-~~v----l~~~~~~~~GG~~id~~l~~~-l~~~~~~~---~~~------------- 331 (493)
|||| ||||+.|-+.. +| . ..+ +-..| -.+.|++|-..+++. +...+.+. .|+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGG 649 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCC
Confidence 9999 99999986654 22 1 111 11223 578999998877654 44444322 121
Q ss_pred CCCCCH-HHH-------------HHHHHHHHHHHHHcCCCCceEEEEecccc--------------hh-----hhccccc
Q 036352 332 DASHYP-LVL-------------QRFLGAAERAKVRLSSEPQVEVKLHNLLN--------------IQ-----VKKSLVQ 378 (493)
Q Consensus 332 ~~~~~~-~~~-------------~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~--------------~~-----~~~~~~~ 378 (493)
+-.... +.. .+++.++|..-.. .........+..+.. .. .......
T Consensus 650 dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 650 DGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 100000 000 1122333331110 000111111111111 00 0112344
Q ss_pred cceEEEEcHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCC------
Q 036352 379 KDLEVTITRSEFESLVS---ELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKS------ 449 (493)
Q Consensus 379 ~~~~~~itr~~~e~~~~---~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~------ 449 (493)
.++.+.|+.+++...+- ..+...+..+-+++... +-|.++|+|-=|++|+|+..+++....++.++
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 66788999999999885 67788888888888775 45699999999999999999999986655443
Q ss_pred -----------CCCCChhHHHHhhHHHHHhh
Q 036352 450 -----------PRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 450 -----------~~~~~p~~aVA~GAa~~a~~ 469 (493)
.+..||..++|.||.+.+..
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La 834 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLA 834 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 13569999999999876654
No 52
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.76 E-value=2e-07 Score=92.38 Aligned_cols=241 Identities=15% Similarity=0.126 Sum_probs=133.0
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeccchHHHHHHhcccCCCCeE
Q 036352 198 FSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYA-GDIAGLDIQGVVEDPVAAALAYGLDKRDGLF 276 (493)
Q Consensus 198 ~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~v 276 (493)
+..++-+..++.|+...-.... .....+++|-|..|....|+.+-+. ++..+.+.+.+.. .|..++++. .+-
T Consensus 75 v~~wd~me~iw~~if~~~L~~~-Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~--qavlya~g~----ttG 147 (372)
T KOG0676|consen 75 VTDWDDMEKIWHHLFYSELLVA-PEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAI--QAVLYASGR----TTG 147 (372)
T ss_pred ccchHHHHHHHHHHHHHhhccC-cccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHH--HHHHHHcCC----eeE
Confidence 3444455777777773322222 2336899999999999999998875 6666777755522 333344443 367
Q ss_pred EEEEeC-CeeEE-EEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHc
Q 036352 277 AVYSFG-GTFEF-SILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRL 354 (493)
Q Consensus 277 lVvDiG-gTtdv-sv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~L 354 (493)
+|+|+| |-|++ -++ +|. .+.+.-....+||.++++.|...|.+. .+...-... ++-++.+|+++
T Consensus 148 ~VvD~G~gvt~~vPI~---eG~-~lp~ai~~ldl~G~dlt~~l~~~L~~~---g~s~~~~~~-------~eIv~diKekl 213 (372)
T KOG0676|consen 148 LVVDSGDGVTHVVPIY---EGY-ALPHAILRLDLAGRDLTDYLLKQLRKR---GYSFTTSAE-------FEIVRDIKEKL 213 (372)
T ss_pred EEEEcCCCceeeeecc---ccc-ccchhhheecccchhhHHHHHHHHHhc---ccccccccH-------HHHHHHhHhhh
Confidence 999999 97655 333 232 122223447899999999888777762 111111111 13355566655
Q ss_pred CCCCc------------eEEEEec-ccchhhhccccccceEEEEcHHHHH---HHHHH-----HHHHHHHHHHHHHHHcC
Q 036352 355 SSEPQ------------VEVKLHN-LLNIQVKKSLVQKDLEVTITRSEFE---SLVSE-----LIEETGAICQKCLEVAN 413 (493)
Q Consensus 355 s~~~~------------~~~~i~~-~~~~~~~~~~~~~~~~~~itr~~~e---~~~~~-----~i~~i~~~i~~~l~~~~ 413 (493)
+-... ..+...+ +.++ . .+.+.-+.|. -+++| ....+.+.+-..+-+++
T Consensus 214 Cyvald~~~e~~~~~~~~~l~~~y~lPDg--------~--~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd 283 (372)
T KOG0676|consen 214 CYVALDFEEEEETANTSSSLESSYELPDG--------Q--KITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCD 283 (372)
T ss_pred cccccccchhhhcccccccccccccCCCC--------C--EEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCC
Confidence 42110 0111111 1111 1 1334333221 12232 22344455555555554
Q ss_pred CC--CCCCCEEEEecCCCCcHHHHHHHHHHhC-CC----CCCCCCCCChhHHHHhhHHHHHhh
Q 036352 414 IT--RKDLDGILVVGGLGCVPSVREYMELFFG-KS----PLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 414 ~~--~~~i~~VvLvGG~s~~p~v~~~l~~~fg-~~----~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.+ +.-...|+|+||++.+|++.+++.+.+. .. ...+..+.+...++=.|+.+.|..
T Consensus 284 ~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlasl 346 (372)
T KOG0676|consen 284 IDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASL 346 (372)
T ss_pred hhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeec
Confidence 43 3345899999999999999999988762 11 111111333335566777777764
No 53
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.67 E-value=4.3e-06 Score=80.47 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCC-CCCCCCChhHHHHhhHHHHHhh
Q 036352 394 VSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPL-KSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 394 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~-~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
+.-+...+.+.+...+++.++. ..|+|+||.++.+++.+.+++.++.++. . +.+|+.+-|+|||++|..
T Consensus 219 ~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~---p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 219 IAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDT---KIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeC---CCCccHHHHHHHHHHHHH
Confidence 3344444444444444443222 4789999999999999999999998887 5 778999999999999965
No 54
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.56 E-value=1.4e-06 Score=83.59 Aligned_cols=170 Identities=14% Similarity=0.133 Sum_probs=104.9
Q ss_pred eeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCC
Q 036352 255 GVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDA 333 (493)
Q Consensus 255 ~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~ 333 (493)
..++|.+|-+.+...-.+ +.=.|+|+| ..+.+..++ ++...-.........|+..|.+.+++.+.-. +
T Consensus 73 ~~~~ei~~~~~g~~~~~~-~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~--------~ 141 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP-EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVS--------V 141 (248)
T ss_pred CceEEhhHHHHHHHHHCC-CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCC--------H
Confidence 357787776655443332 223599999 888887666 5544333344545678888888887664322 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCC----CceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Q 036352 334 SHYPLVLQRFLGAAERAKVRLSSE----PQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETGAICQKCL 409 (493)
Q Consensus 334 ~~~~~~~~rL~~~~e~~K~~Ls~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l 409 (493)
++++..+..-... ....+..+...- ..+.-..++ ++++..+++.+...+.+.+
T Consensus 142 -----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi---------~~l~~g~~~---~di~~~~~~~va~~i~~~~ 198 (248)
T TIGR00241 142 -----------EELGSLAEKADRKAKISSMCTVFAESELI---------SLLAAGVKK---EDILAGVYESIAERVAEML 198 (248)
T ss_pred -----------HHHHHHHhcCCCCCCcCCEeEEEechhHH---------HHHHCCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 4444444431111 111111110000 000111222 4566666777776666666
Q ss_pred HHcCCCCCCCC-EEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHH
Q 036352 410 EVANITRKDLD-GILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIH 466 (493)
Q Consensus 410 ~~~~~~~~~i~-~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~ 466 (493)
...+ ++ .|+++||.++++++.+.+.+.++.++.. +.+|..+.|+|||++
T Consensus 199 ~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~---~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 199 QRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVIT---PPEPQIVGAVGAALL 248 (248)
T ss_pred hhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEc---CCCccHHHHHHHHhC
Confidence 5432 44 7999999999999999999999999988 899999999999974
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.54 E-value=4.3e-06 Score=83.60 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=43.6
Q ss_pred CEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHh
Q 036352 420 DGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGE 468 (493)
Q Consensus 420 ~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~ 468 (493)
+.|+++||.++.+.+.+.+++.++.++.. +.+|+.+-|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iiv---Pe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVV---PEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEE---CCcccHHHHHHHHHHhc
Confidence 46999999999999999999999999998 99999999999999985
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.52 E-value=8.6e-06 Score=79.51 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 391 ESLVSELIEETGAICQK-CLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 391 e~~~~~~i~~i~~~i~~-~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
|+++.-+...+.+.+.. +++..+.. +.|+|+||.+....+.++++..+|.++.. |.+|...-|+|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~lg~~V~v---P~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLLGRKVIV---PPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHhCCeeec---CCccchhhHHHHHHHHhh
Confidence 44455555555444444 55543333 23999999999999999999999999999 999999999999999975
Q ss_pred h
Q 036352 470 F 470 (493)
Q Consensus 470 ~ 470 (493)
.
T Consensus 391 ~ 391 (396)
T COG1924 391 V 391 (396)
T ss_pred h
Confidence 4
No 57
>PRK13317 pantothenate kinase; Provisional
Probab=98.40 E-value=6.4e-05 Score=72.77 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=43.1
Q ss_pred CCCEEEEec-CCCCcHHHHHHHHHHh---CCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 418 DLDGILVVG-GLGCVPSVREYMELFF---GKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 418 ~i~~VvLvG-G~s~~p~v~~~l~~~f---g~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.++.|+++| |.++.|.+++.+.+.+ +.++.. +.||..+.|+|||+++..
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~---p~~~~~~gAlGAaL~a~~ 274 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIF---LENGGYSGAIGALLLATN 274 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEe---cCCCchhHHHHHHHHhhh
Confidence 457999999 7999999999999988 567777 899999999999998763
No 58
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=98.18 E-value=0.00012 Score=69.72 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=60.2
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCCeeeeccchHHHHHHhc---ccCC------CCeEEEEEeC-CeeEEEEE
Q 036352 222 SATKAVISVPACFNEAQREAIKY-AGDIAGLDIQGVVEDPVAAALAYG---LDKR------DGLFAVYSFG-GTFEFSIL 290 (493)
Q Consensus 222 ~~~~vvitVP~~~~~~~r~~l~~-a~~~aGl~~~~li~Ep~Aaa~~~~---~~~~------~~~vlVvDiG-gTtdvsv~ 290 (493)
....+++|-|..--+.-.+.+.+ ..+.-+++. +..-+.|+..++. .+++ +.+.+|+|-| +-|.+.-
T Consensus 92 ~~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip- 168 (400)
T KOG0680|consen 92 KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIP- 168 (400)
T ss_pred CcceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEeh-
Confidence 34689999997665555555544 466667765 3344444444433 2221 5589999999 8777642
Q ss_pred EEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 036352 291 EISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWRE 324 (493)
Q Consensus 291 ~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~ 324 (493)
+-++.....+..+ ..+||..++..|.+++.-+
T Consensus 169 -~v~g~~~~qaV~R-iDvGGK~LTn~LKE~iSyR 200 (400)
T KOG0680|consen 169 -VVKGIPYYQAVKR-IDVGGKALTNLLKETISYR 200 (400)
T ss_pred -hhcCcchhhceEE-eecchHHHHHHHHHHhhhh
Confidence 2233322222334 7899999999998887533
No 59
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.17 E-value=5.8e-05 Score=69.71 Aligned_cols=194 Identities=19% Similarity=0.209 Sum_probs=125.9
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEE
Q 036352 222 SATKAVISVPACFNEAQREAIKYA-GDIAGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKV 299 (493)
Q Consensus 222 ~~~~vvitVP~~~~~~~r~~l~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~v 299 (493)
...++.+|-|..-....|+.|-+. ++.-|+.-+.+.-.++-+.++-++. .-+|+|-| |-|.+.-+. ++. ..
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~----tGvVvDSGDGVTHi~PVy--e~~-~l 172 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL----TGVVVDSGDGVTHIVPVY--EGF-VL 172 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc----ceEEEecCCCeeEEeeee--cce-eh
Confidence 345899999999988999998774 7888999888887777776666544 46899999 988875332 111 11
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCC-----------CceEEEEe--c
Q 036352 300 KAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSE-----------PQVEVKLH--N 366 (493)
Q Consensus 300 l~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~-----------~~~~~~i~--~ 366 (493)
-.-.+...+.|+++++-|++.|..+ .|...-+.+ .+..+.+|++|+-- .++++-++ .
T Consensus 173 ~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt 242 (389)
T KOG0677|consen 173 PHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVESYT 242 (389)
T ss_pred hhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeeeeee
Confidence 1123447899999999999988766 233222222 25566777776521 11111111 1
Q ss_pred ccchhhhccccccceEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCEEEEecCCCCcHHHHH
Q 036352 367 LLNIQVKKSLVQKDLEVTITRSEFE---SLVSELI-----EETGAICQKCLEVANIT--RKDLDGILVVGGLGCVPSVRE 436 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~itr~~~e---~~~~~~i-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~ 436 (493)
+.+| . .+.+-.+.|+ .+++|.+ ..+.+++..+++.++++ ..--.+|+|.||++--|++..
T Consensus 243 LPDG--------R--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPS 312 (389)
T KOG0677|consen 243 LPDG--------R--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPS 312 (389)
T ss_pred cCCC--------c--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcH
Confidence 1222 2 4455555554 3555522 35567778888877665 222389999999999999988
Q ss_pred HHHHHh
Q 036352 437 YMELFF 442 (493)
Q Consensus 437 ~l~~~f 442 (493)
+|++.+
T Consensus 313 RLEkEl 318 (389)
T KOG0677|consen 313 RLEKEL 318 (389)
T ss_pred HHHHHH
Confidence 887654
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.15 E-value=0.00053 Score=65.26 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCC-C----CCCCCCCCChhHHHHhhHHHHH
Q 036352 393 LVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGK-S----PLKSPRGVTPDEAVVIGAAIHG 467 (493)
Q Consensus 393 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~-~----~~~~~~~~~p~~aVA~GAa~~a 467 (493)
++.-+...+.+.+...+++.+.. -..|+|+||.++.+++.+.+++.++. . +.. +.+|+.+-|+|||++|
T Consensus 189 I~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~---~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 189 ILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAEN---HPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecC---CCcchHHHHHHHHHcC
Confidence 33444444444444445543211 13699999999999999999999843 2 333 6789999999999975
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.00 E-value=0.00017 Score=67.71 Aligned_cols=194 Identities=16% Similarity=0.117 Sum_probs=106.6
Q ss_pred HHHHcCCCeeeeccchHHHHHHhcccCC-CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 036352 245 AGDIAGLDIQGVVEDPVAAALAYGLDKR-DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLW 322 (493)
Q Consensus 245 a~~~aGl~~~~li~Ep~Aaa~~~~~~~~-~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~ 322 (493)
.-+..|.++..-=-|+.+|.+..+.... +....++|+| |+||.+++.-.+.. ......| .|+.++..+...|
T Consensus 104 l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v-~~iHlAG----AG~mVTmlI~sEL- 177 (332)
T PF08841_consen 104 LEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV-TAIHLAG----AGNMVTMLINSEL- 177 (332)
T ss_dssp HHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E-EEEEEE-----SHHHHHHHHHHHC-
T ss_pred HHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE-EEEEecC----CchhhHHHHHHhh-
Confidence 3445688887778999999999988877 7789999999 99999998654433 3333333 4777777765442
Q ss_pred HHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCC----------CCceEEEEecccchhhhcccc-----ccceEEEE--
Q 036352 323 REFTRCHAFDASHYPLVLQRFLGAAERAKVRLSS----------EPQVEVKLHNLLNIQVKKSLV-----QKDLEVTI-- 385 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~----------~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i-- 385 (493)
+++. +.-+|.+|+.--. .+.....++ ..-+...++ ..+.-+.|
T Consensus 178 -------Gl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd---~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 178 -------GLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFD---EPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp -------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-S---S---CCCTTSEEEECTTEEEEESS
T ss_pred -------CCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEec---CCCChHHeeEEEEecCCceeecCC
Confidence 3222 2678888874110 010000000 000000000 01112223
Q ss_pred --cHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--CCCCCCEEEEecCCCCcHHHHHHHHHHhC--------CCCCCCCCC
Q 036352 386 --TRSEFESLVSELIEET-GAICQKCLEVANI--TRKDLDGILVVGGLGCVPSVREYMELFFG--------KSPLKSPRG 452 (493)
Q Consensus 386 --tr~~~e~~~~~~i~~i-~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~v~~~l~~~fg--------~~~~~~~~~ 452 (493)
+-+++..+-+..-++. .....++|++... +..+|+.|+|+||++.=.=|.+++.+.+. -++.- .
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG---~ 314 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRG---V 314 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGG---T
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccccc---c
Confidence 2333333333322222 2333445544322 24578999999999987778888888772 13333 5
Q ss_pred CChhHHHHhhHHHHH
Q 036352 453 VTPDEAVVIGAAIHG 467 (493)
Q Consensus 453 ~~p~~aVA~GAa~~a 467 (493)
.-|-.|||.|+++.-
T Consensus 315 eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 315 EGPRNAVATGLVLSY 329 (332)
T ss_dssp STTSTHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhh
Confidence 679999999998753
No 62
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.79 E-value=0.0018 Score=67.34 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=62.9
Q ss_pred ccceEEEEcHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCC-----
Q 036352 378 QKDLEVTITRSEFESLVSEL---IEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKS----- 449 (493)
Q Consensus 378 ~~~~~~~itr~~~e~~~~~~---i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~----- 449 (493)
..+..+.|.-.++++.+-.- +......+-+++.- .+-|.++|+|--+++|+++..++.....++.++
T Consensus 740 I~d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~ 814 (1014)
T COG4457 740 ILDVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDD 814 (1014)
T ss_pred eeccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccc
Confidence 34556777777777765543 55555556666554 345789999999999999999998876554433
Q ss_pred ------------CCCCChhHHHHhhHHHHHhh
Q 036352 450 ------------PRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 450 ------------~~~~~p~~aVA~GAa~~a~~ 469 (493)
.+..||..++|.||.+-+..
T Consensus 815 Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Ls 846 (1014)
T COG4457 815 YRVGTWYPFRKQGRIDDPKTTAAVGAMLCALS 846 (1014)
T ss_pred eeccceecccccCcCCCcchHHHHHHHHHHHH
Confidence 14569999999999887665
No 63
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.54 E-value=0.00085 Score=67.80 Aligned_cols=121 Identities=21% Similarity=0.196 Sum_probs=86.1
Q ss_pred eEeCHHHHHHHHHHHHHHHHHHHhCCC-----CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCCeeeeccchHHHHHHhcc
Q 036352 196 GIFSPAKIQAFILAKMRAIGEVYLKES-----ATKAVISVPACFNEAQREAIKY-AGDIAGLDIQGVVEDPVAAALAYGL 269 (493)
Q Consensus 196 ~~~~~~~v~~~~L~~l~~~~~~~~~~~-----~~~vvitVP~~~~~~~r~~l~~-a~~~aGl~~~~li~Ep~Aaa~~~~~ 269 (493)
...+..++++++-+-+.....+.++.+ ...+|+.||..|...+.+.+.. .....|+....++.|+.|+.++.+.
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 355677777665333333334444443 3578999999999988777665 4677899999999999999998886
Q ss_pred cCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 036352 270 DKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWR 323 (493)
Q Consensus 270 ~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~ 323 (493)
. ...|||+| .+|.++.++-+ .. ...+.-....||++|++.|+-.+.+
T Consensus 275 s----s~CVVdiGAQkTsIaCVEdG--vs-~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S----SACVVDIGAQKTSIACVEDG--VS-LPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c----ceeEEEccCcceeEEEeecC--cc-ccCceEEeccCCchHHHHHHHHHHh
Confidence 5 67999999 99999877643 21 1112222578999999988866554
No 64
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=97.52 E-value=0.003 Score=64.34 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=41.6
Q ss_pred ceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHH
Q 036352 380 DLEVTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYME 439 (493)
Q Consensus 380 ~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~ 439 (493)
.-.+.||..+++++ +-.-..+..-++-.|++++++..+|+.|+|.||+++.=-+.+.+.
T Consensus 290 ~~~i~itq~DIr~~-qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 290 GDDIYITQKDIREF-QLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SS-EEEEHHHHHHH-HHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCEEEeHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34789999999874 444556677888899999999999999999999998655565554
No 65
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=97.48 E-value=0.0012 Score=67.37 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=77.9
Q ss_pred EeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeccchHHHHHHhcccCC---
Q 036352 197 IFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYA-GDIAGLDIQGVVEDPVAAALAYGLDKR--- 272 (493)
Q Consensus 197 ~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~--- 272 (493)
.++-.+++..+|.|+.....-.-..-...+++|-+..-....|+.|-+. ++.-|++.+.+=-+..=+ +..+..
T Consensus 90 VvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS---~~hN~~~~~ 166 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFS---FYHNYGKSS 166 (645)
T ss_pred ccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHH---HhhccCccc
Confidence 5566777777777666543211111245789999887777788888775 777899887665444322 222222
Q ss_pred CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 036352 273 DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWRE 324 (493)
Q Consensus 273 ~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~ 324 (493)
+...+|+++| .+|.|-.+- +|......... +++||.....-|.+.+..+
T Consensus 167 ~~~~liis~g~~~T~vipvl--dG~~il~~~kR-iN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 167 NKSGLIISMGHSATHVIPVL--DGRLILKDVKR-INWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred CcceEEEecCCCcceeEEEe--cCchhhhccee-eccCcchHHHHHHHHHhcc
Confidence 4478999999 888884443 44332333334 7899999888777777664
No 66
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.41 E-value=0.029 Score=54.16 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=39.3
Q ss_pred CCCCEEEEecC-CCCcHHHHHHHHHHh---CCCCCCCCCCCChhHHHHhhHHH
Q 036352 417 KDLDGILVVGG-LGCVPSVREYMELFF---GKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 417 ~~i~~VvLvGG-~s~~p~v~~~l~~~f---g~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
..++.|+++|| .+..|.+++.+...+ +.+... +.|.....|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~if---p~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALF---LEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEE---ECCcchHHHhhhcc
Confidence 45789999999 778999999998877 456666 88999999999986
No 67
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.33 E-value=0.095 Score=50.82 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh-----CCCCCCCCCCCChhHHHHhhHHH
Q 036352 391 ESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF-----GKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 391 e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-----g~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
.++++...+.+.+.+...+.+.+.... .|+|+||..+...+.+.+.+.+ ..++.. +.+|...-|.|||+
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~~~~a~GAal 269 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIII---PVEPQYDPAYGAAL 269 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCEC---ECCGSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEE---CCCCCccHHHHHHH
Confidence 446666677777777777776544322 2999999999977777664333 344445 67899999999999
Q ss_pred HH
Q 036352 466 HG 467 (493)
Q Consensus 466 ~a 467 (493)
+|
T Consensus 270 lA 271 (271)
T PF01869_consen 270 LA 271 (271)
T ss_dssp HH
T ss_pred hC
Confidence 86
No 68
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.33 E-value=0.0045 Score=63.74 Aligned_cols=226 Identities=21% Similarity=0.148 Sum_probs=124.9
Q ss_pred HHHHHHHHcCCCeeee----ccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeC---Ce----EEEEEecCCCCC
Q 036352 241 AIKYAGDIAGLDIQGV----VEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISN---GV----IKVKAKRKSLSH 308 (493)
Q Consensus 241 ~l~~a~~~aGl~~~~l----i~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~---~~----~~vl~~~~~~~~ 308 (493)
...++++..||+.-.. +-+.-|.+++.+... ..-|+.=+| +|+++.+-+... |. ...+-...-..-
T Consensus 233 Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~--~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~E 310 (544)
T COG1069 233 LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ--PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYE 310 (544)
T ss_pred cCHHHHHHhCCCCCcEEeccceeccccccccccCC--CCeEEEEeccceEEEEecCCceecCccccccccccCcchhhhc
Confidence 4566777777754222 223344444433222 233555589 999987654331 11 111111111233
Q ss_pred chHHHHHHHHHHHHHHHh---------hhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhc-----
Q 036352 309 GGLDFDLLLVRHLWREFT---------RCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKK----- 374 (493)
Q Consensus 309 GG~~id~~l~~~l~~~~~---------~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~----- 374 (493)
||..-+=.|++|+.+... .+++.++ ......++..-+++++...+... .-+-++.+..+++..
T Consensus 311 gGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~-~l~~l~~f~GNRsP~aDp~l 387 (544)
T COG1069 311 GGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPLAS-GLHVLDWFNGNRSPLADPRL 387 (544)
T ss_pred ccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCcccC-CcEecccccCCcCCCCCccc
Confidence 777777778888777621 0111000 01223334444455554432221 123344433332210
Q ss_pred cccccceEEEEcHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCC
Q 036352 375 SLVQKDLEVTITRSEFESLVSELIEETG---AICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPR 451 (493)
Q Consensus 375 ~~~~~~~~~~itr~~~e~~~~~~i~~i~---~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~ 451 (493)
.+....+++.=+.+.+..+..-.+.-+. +.|-+++++.+. .|+.|+.+||..+.|.+.+.+....|.++..
T Consensus 388 ~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~~v~i--- 461 (544)
T COG1069 388 KGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGRPVVI--- 461 (544)
T ss_pred eeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCCeEEe---
Confidence 0111222334445545455555444443 455555566554 4899999999999999999999999999987
Q ss_pred CCChhHHHHhhHHHHHhhhcccCCCCC
Q 036352 452 GVTPDEAVVIGAAIHGEKFRYVNRREP 478 (493)
Q Consensus 452 ~~~p~~aVA~GAa~~a~~~~~~~~~~~ 478 (493)
...+++++.|+|+.|+.-+|.+.-.+
T Consensus 462 -~~s~~a~llGsAm~~avAag~~~dl~ 487 (544)
T COG1069 462 -PASDQAVLLGAAMFAAVAAGVHPDLP 487 (544)
T ss_pred -ecccchhhhHHHHHHHHHhccCcchH
Confidence 47778999999999999888776554
No 69
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.25 E-value=0.002 Score=65.67 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=46.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeee---ccchHHHHHHhccc---CC-CCeEEEEEeC-CeeEEEEEEEeC
Q 036352 224 TKAVISVPACFNEAQREAIKYAGDIAGLDIQGV---VEDPVAAALAYGLD---KR-DGLFAVYSFG-GTFEFSILEISN 294 (493)
Q Consensus 224 ~~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~l---i~Ep~Aaa~~~~~~---~~-~~~vlVvDiG-gTtdvsv~~~~~ 294 (493)
.-++||=-+--.+..++.+...+..||==++.. -.|+.-|+...+.. .+ ...|+=+|+| ||+++++++.++
T Consensus 86 GAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~ 164 (473)
T PF06277_consen 86 GAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE 164 (473)
T ss_pred ccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE
Confidence 456777666666777888887788887322221 24555554433222 22 7789999999 999999998653
No 70
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.21 E-value=0.0052 Score=61.32 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhC-----CCCCCCCCCCChhHHHHhhHHHHH
Q 036352 394 VSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFG-----KSPLKSPRGVTPDEAVVIGAAIHG 467 (493)
Q Consensus 394 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg-----~~~~~~~~~~~p~~aVA~GAa~~a 467 (493)
+.-+...+...+...+.+.. ..-..|+++||.++.+++.+.|++.++ .++.. +.+|+.+-|+|||++|
T Consensus 360 aAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~V---p~~pq~~GALGAAL~a 432 (432)
T TIGR02259 360 LAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINI---DPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEec---CCCccHHHHHHHHHhC
Confidence 33444444444444444431 112589999999999999999999994 45666 8999999999999986
No 71
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.99 E-value=0.00079 Score=61.98 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 391 ESLVSELIEETGAICQKCLEVANIT-RKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 391 e~~~~~~i~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.++++-+++.+.-.++..++..... ...++.|+++||.++.+.+.+.+...||.++.. .+..++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~----~~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVR----PEVEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEE----ESSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEe----CCCCchHHHHHHHHHHh
Confidence 3444455555554444444433111 234899999999999999999999999999887 44489999999999974
No 72
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.80 E-value=0.0051 Score=65.91 Aligned_cols=88 Identities=19% Similarity=0.182 Sum_probs=67.0
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhH
Q 036352 384 TITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGA 463 (493)
Q Consensus 384 ~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GA 463 (493)
.-+|.++..+++-+++.+.-.++..++........++.|.++||+++++...+.+...+|.++.. ..+ .++.|.||
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~---~~~-~e~~alGa 484 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLI---PYV-NEAVLHGA 484 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEe---cCh-hHHHHHHH
Confidence 33566677777777777766666555543212235789999999999999999999999999987 444 46789999
Q ss_pred HHHHhhhcccCC
Q 036352 464 AIHGEKFRYVNR 475 (493)
Q Consensus 464 a~~a~~~~~~~~ 475 (493)
|+.|+.-.|.++
T Consensus 485 A~lA~~~~G~~~ 496 (541)
T TIGR01315 485 AMLGAKAAGTTE 496 (541)
T ss_pred HHHHHHhcCccC
Confidence 999998877653
No 73
>PRK15027 xylulokinase; Provisional
Probab=96.69 E-value=0.0044 Score=65.47 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=62.1
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhH
Q 036352 384 TITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGA 463 (493)
Q Consensus 384 ~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GA 463 (493)
.-++.+|...+-+-+.-....+-+.++..+ ..++.|+++||+++++...+++...+|.++.. ..+..++.|.||
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~---~~~~~~~~a~Ga 428 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACG---IKPQSVTLIGGGARSEYWRQMLADISGQQLDY---RTGGDVGPALGA 428 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCccEEEEeCcccCCHHHHHHHHHHhCCeEEe---ecCCCcchHHHH
Confidence 335666655443322222233333444433 24789999999999999999999999999966 566777889999
Q ss_pred HHHHhhhcccCCC
Q 036352 464 AIHGEKFRYVNRR 476 (493)
Q Consensus 464 a~~a~~~~~~~~~ 476 (493)
|+.|+.-.|.++.
T Consensus 429 A~lA~~~~G~~~~ 441 (484)
T PRK15027 429 ARLAQIAANPEKS 441 (484)
T ss_pred HHHHHHhcCCcCC
Confidence 9999998876654
No 74
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=96.45 E-value=0.01 Score=61.56 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-CCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 396 ELIEETGAICQKCLEVANITR-KDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 396 ~~i~~i~~~i~~~l~~~~~~~-~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
..++.+.-..++.|+...... ..|+.+.+.||.|+.|.+.+.+...+|.++.. +.+++. ++.|||+.|+..++..
T Consensus 391 A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~---p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 391 AALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVR---PQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCcccc---ccchhH-HHHHHHHHHHhhcCCc
Confidence 444444444444444332222 46889999999999999999999999999998 888877 9999999999999984
Q ss_pred C
Q 036352 475 R 475 (493)
Q Consensus 475 ~ 475 (493)
.
T Consensus 467 ~ 467 (516)
T KOG2517|consen 467 S 467 (516)
T ss_pred c
Confidence 3
No 75
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.38 E-value=0.01 Score=63.07 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHH
Q 036352 386 TRSEFESLVSELIEETGAICQKCLEVAN-ITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAA 464 (493)
Q Consensus 386 tr~~~e~~~~~~i~~i~~~i~~~l~~~~-~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa 464 (493)
+|.++ ++-+++.+.-.++..++... .....++.|.++||+++++.+.+.+...||.++.. .+..++.|+|||
T Consensus 373 ~~~~l---~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~----~~~~e~~a~GaA 445 (498)
T PRK00047 373 TKEHI---IRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVER----PVVAETTALGAA 445 (498)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEe----cCcccchHHHHH
Confidence 45444 34444444444444333321 11224789999999999999999999999999987 445578899999
Q ss_pred HHHhhhcccCCC
Q 036352 465 IHGEKFRYVNRR 476 (493)
Q Consensus 465 ~~a~~~~~~~~~ 476 (493)
+.|+.-.|.++.
T Consensus 446 ~~A~~~~G~~~~ 457 (498)
T PRK00047 446 YLAGLAVGFWKD 457 (498)
T ss_pred HHHhhhcCcCCC
Confidence 999998886543
No 76
>PRK13321 pantothenate kinase; Reviewed
Probab=96.36 E-value=0.13 Score=49.50 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=17.4
Q ss_pred eEEEEcCCccEEEEEEeCC
Q 036352 88 VLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~ 106 (493)
+++||+|.|++++|+++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 7899999999999999865
No 77
>PRK04123 ribulokinase; Provisional
Probab=96.36 E-value=0.0088 Score=64.26 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCC-CCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHH
Q 036352 386 TRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGL-GCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAA 464 (493)
Q Consensus 386 tr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa 464 (493)
+|.++ ++-+++.+.-.++..++........++.|+++||+ ++++.+.+.+...||.++.. .++.++.|.|||
T Consensus 409 ~~~~l---~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~----~~~~e~~alGaA 481 (548)
T PRK04123 409 DAPDI---YRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQV----VASDQCPALGAA 481 (548)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEe----cCccccchHHHH
Confidence 45544 44444444433333333221112347899999999 99999999999999999976 445678899999
Q ss_pred HHHhhhcccCC
Q 036352 465 IHGEKFRYVNR 475 (493)
Q Consensus 465 ~~a~~~~~~~~ 475 (493)
+.|+.-.|.+.
T Consensus 482 ~lA~~~~G~~~ 492 (548)
T PRK04123 482 IFAAVAAGAYP 492 (548)
T ss_pred HHHHHHhccCC
Confidence 99998777553
No 78
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.34 E-value=0.012 Score=62.27 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=48.3
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNRR 476 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~ 476 (493)
.++.|+++||+++++.+.+.+...||.++.. .+..++.|.|||+.|+...|.++.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~----~~~~e~~a~GaA~~a~~~~g~~~~ 444 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDV----PEGEEGPALGAAILAAWALGEKDL 444 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceee----cCCCcchHHHHHHHHHHhcCCCCC
Confidence 4789999999999999999999999999887 446678899999999998886543
No 79
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=96.33 E-value=0.011 Score=62.78 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=47.3
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNR 475 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~ 475 (493)
.++.|.++||+++++.+.+.+...||.++.. .+..++.|.|||+.|+.-.|.++
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~----~~~~e~~alGaAl~aa~a~G~~~ 459 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGKDIVV----PEMAETTALGAALLAGLAVGVWK 459 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCCceEe----cCcccchHHHHHHHHHhhcCccC
Confidence 3789999999999999999999999999987 44556789999999998888654
No 80
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.29 E-value=0.0098 Score=63.05 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNR 475 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~ 475 (493)
.++.|.++||+++++...+++...||.++.. .+..++.|.|||+.|+.-.|.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~----~~~~e~~alGaA~~a~~~~G~~~ 452 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVR----PKVTETTALGAAYAAGLAVGYWK 452 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEe----cCCCcchHHHHHHHHHhhcCcCC
Confidence 4789999999999999999999999999977 44456889999999998887654
No 81
>PRK10331 L-fuculokinase; Provisional
Probab=96.20 E-value=0.013 Score=61.77 Aligned_cols=85 Identities=21% Similarity=0.095 Sum_probs=59.1
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhH
Q 036352 385 ITRSEFESLVSELIEETGAICQKCLEVAN-ITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGA 463 (493)
Q Consensus 385 itr~~~e~~~~~~i~~i~~~i~~~l~~~~-~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GA 463 (493)
-+|.++.. -+++.+.-.++..++... .....++.|.++||+++++...+.+...||.++.. .. ..++.++||
T Consensus 358 ~~~~~l~r---AvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~---~~-~~e~~a~Ga 430 (470)
T PRK10331 358 TTRGHFYR---AALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKV---LD-DAETTVAGA 430 (470)
T ss_pred cCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEe---cC-cccchHHHH
Confidence 35655543 444444433333333221 11235789999999999999999999999999977 44 456889999
Q ss_pred HHHHhhhcccCCC
Q 036352 464 AIHGEKFRYVNRR 476 (493)
Q Consensus 464 a~~a~~~~~~~~~ 476 (493)
|+.|+.-.|.++.
T Consensus 431 A~la~~~~G~~~~ 443 (470)
T PRK10331 431 AMFGWYGVGEFSS 443 (470)
T ss_pred HHHHHHhcCCCCC
Confidence 9999988776544
No 82
>PLN02669 xylulokinase
Probab=96.19 E-value=0.015 Score=62.32 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHH
Q 036352 386 TRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 386 tr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
+|.++ ++.+++.+.=.++..++..+.. ..++.|+++||+++++.+.+.+...||.++.. ...+ ++.|.|||+
T Consensus 417 ~~~~~---~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~---~~~~-ea~alGAA~ 488 (556)
T PLN02669 417 DPPSE---VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYT---VQRP-DSASLGAAL 488 (556)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEe---cCCC-CchHHHHHH
Confidence 45443 4444444444444444444322 45789999999999999999999999998887 4444 688999999
Q ss_pred HHhh
Q 036352 466 HGEK 469 (493)
Q Consensus 466 ~a~~ 469 (493)
.|+.
T Consensus 489 ~A~~ 492 (556)
T PLN02669 489 RAAH 492 (556)
T ss_pred HHHH
Confidence 9987
No 83
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.12 E-value=0.014 Score=61.37 Aligned_cols=84 Identities=19% Similarity=0.069 Sum_probs=59.4
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHH
Q 036352 384 TITRSEFESLVSELIEETGAICQ---KCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVV 460 (493)
Q Consensus 384 ~itr~~~e~~~~~~i~~i~~~i~---~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA 460 (493)
.-++.+|.. -+++.+.-.++ +.+++.+ ...++.|.++||+++++...+.+...||.++.. ..+ .++.+
T Consensus 361 ~~~~~~l~r---AvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~---~~~-~e~~~ 431 (465)
T TIGR02628 361 NTTRGHIYR---AALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANMLDIPVKV---VDD-AETTV 431 (465)
T ss_pred CCCHHHHHH---HHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhcCCeeEe---ccC-CcchH
Confidence 335555444 44444433333 3444332 224789999999999999999999999999977 454 46789
Q ss_pred hhHHHHHhhhcccCCC
Q 036352 461 IGAAIHGEKFRYVNRR 476 (493)
Q Consensus 461 ~GAa~~a~~~~~~~~~ 476 (493)
.|||+.|+.-.|.++.
T Consensus 432 lGaA~~a~~a~G~~~~ 447 (465)
T TIGR02628 432 AGAAMFGFYGVGEYNS 447 (465)
T ss_pred HHHHHHHHHhcCccCC
Confidence 9999999998886653
No 84
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.07 E-value=0.016 Score=61.99 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=58.5
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCC-CCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhH
Q 036352 385 ITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGL-GCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGA 463 (493)
Q Consensus 385 itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GA 463 (493)
-+|.++...+-+-+.--...+-+.|++.+ ..++.|+++||+ ++++.+.+.+...||.++.. ..+ .++.|.||
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~l~~l~~~g---~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~---~~~-~e~~a~Ga 477 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMIMETFTDSG---VPVEELMAAGGIARKNPVIMQIYADVTNRPLQI---VAS-DQAPALGA 477 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcceEEEeCCccccCHHHHHHHHHhhCCeeEe---ccC-CcchhHHH
Confidence 35655544333322222233333444433 357899999999 99999999999999999977 444 46889999
Q ss_pred HHHHhhhcccCC
Q 036352 464 AIHGEKFRYVNR 475 (493)
Q Consensus 464 a~~a~~~~~~~~ 475 (493)
|+.|+.-.|.++
T Consensus 478 A~lA~~~~G~~~ 489 (536)
T TIGR01234 478 AIFAAVAAGVYA 489 (536)
T ss_pred HHHHHHHcCCcC
Confidence 999998887654
No 85
>PLN02295 glycerol kinase
Probab=96.06 E-value=0.027 Score=60.02 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=47.4
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNR 475 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~ 475 (493)
.++.|.++||+++++.+.+.+...||.++.. .+..++.|.|||+.|+.-.|.+.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~----~~~~e~~alGaA~~A~~~~G~~~ 465 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVR----PADIETTALGAAYAAGLAVGLWT 465 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEe----cCccccHHHHHHHHHHhhcCcCC
Confidence 5789999999999999999999999999977 44557889999999998887654
No 86
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.24 Score=52.56 Aligned_cols=83 Identities=20% Similarity=0.107 Sum_probs=53.5
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHH
Q 036352 385 ITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAA 464 (493)
Q Consensus 385 itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa 464 (493)
-++.++...+-+-+.-.....-+.|.+. ....++.|.++||+++.+...+++.+.+|.++.. +...+.+.+-||+
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~---~~~~e~~a~g~A~ 444 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADALGLPVVV---PEVEEAGALGGAA 444 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHcCCeeEe---cCcccchHHHHHH
Confidence 3666655544443333334444455544 2234679999999999999999999999999987 4444444455555
Q ss_pred HHHhhhcc
Q 036352 465 IHGEKFRY 472 (493)
Q Consensus 465 ~~a~~~~~ 472 (493)
+.+....+
T Consensus 445 ~~~~~~~~ 452 (502)
T COG1070 445 LAAAALGG 452 (502)
T ss_pred HHHHHhCC
Confidence 55554433
No 87
>PRK10854 exopolyphosphatase; Provisional
Probab=95.93 E-value=0.09 Score=55.91 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCeeeeccchHHHHHHh-cccCC---CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHH
Q 036352 238 QREAIKYAGDIAGLDIQGVVEDPVAAALAY-GLDKR---DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLD 312 (493)
Q Consensus 238 ~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~-~~~~~---~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~ 312 (493)
..+.+.++-+..|++. .+++-.+=|.+.| +.... .+..+|+|+| |+|.+++++-.+..+ ..+.++|...
T Consensus 98 ~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~-----~~S~~lG~vr 171 (513)
T PRK10854 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL-----VESRRMGCVS 171 (513)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE-----eEEEecceee
Confidence 3444555666679998 5665544444443 33322 4468999999 999999886433221 1123677776
Q ss_pred HHHHH
Q 036352 313 FDLLL 317 (493)
Q Consensus 313 id~~l 317 (493)
+.+.+
T Consensus 172 l~e~f 176 (513)
T PRK10854 172 FAQLY 176 (513)
T ss_pred HHhhh
Confidence 66654
No 88
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.90 E-value=0.019 Score=61.00 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=47.8
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNRR 476 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~ 476 (493)
.++.|.++||+++++...+.+...||.++.. .. ..++.+.|||+.|+.-.|.++.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~---~~-~~e~~a~GaA~la~~~~G~~~~ 455 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVV---PE-SYESSCLGACILGLKALGLIED 455 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEe---cC-CCCcchHHHHHHHHHhcCccCC
Confidence 5789999999999999999999999999987 44 4468899999999988886544
No 89
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.89 E-value=0.042 Score=57.60 Aligned_cols=84 Identities=13% Similarity=0.005 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHH
Q 036352 386 TRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 386 tr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
+|.++-..+-+-+.--.+.+-+.|++. ....++.|.++||+++.+...+.+.+.+|.++.. . . .++.|.|||+
T Consensus 357 ~~~~l~RAv~Egva~~~r~~~e~l~~~--~~~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~---~-~-~e~~a~GaA~ 429 (454)
T TIGR02627 357 SDAELARCIFDSLALLYRQVLLELAEL--RGKPISQLHIVGGGSQNAFLNQLCADACGIRVIA---G-P-VEASTLGNIG 429 (454)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCcCEEEEECChhhhHHHHHHHHHHhCCceEc---C-C-chHHHHHHHH
Confidence 566654443332222223333444432 1124789999999999999999999999999965 3 3 5788999999
Q ss_pred HHhhhcccCCC
Q 036352 466 HGEKFRYVNRR 476 (493)
Q Consensus 466 ~a~~~~~~~~~ 476 (493)
.|+.-.|.++.
T Consensus 430 ~a~~~~G~~~~ 440 (454)
T TIGR02627 430 VQLMALDEIND 440 (454)
T ss_pred HHHHhcCCcCC
Confidence 99998887654
No 90
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.73 E-value=0.0073 Score=50.82 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=28.4
Q ss_pred EEEEEeC-CeeEEEEEEEe-CCeEEEEEecCC--CCCchHHHH--HHHHHHHHHHH
Q 036352 276 FAVYSFG-GTFEFSILEIS-NGVIKVKAKRKS--LSHGGLDFD--LLLVRHLWREF 325 (493)
Q Consensus 276 vlVvDiG-gTtdvsv~~~~-~~~~~vl~~~~~--~~~GG~~id--~~l~~~l~~~~ 325 (493)
++++|+| +++.+.+++.+ .+.++++..... ..+=+.+|+ +.+.+-+...+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~ 56 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAI 56 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--H
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHH
Confidence 6899999 99999999874 334444322110 112278888 77777766553
No 91
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.72 E-value=0.057 Score=56.84 Aligned_cols=54 Identities=15% Similarity=0.016 Sum_probs=46.9
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNRR 476 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~ 476 (493)
.++.|.++||+++++...+.+...+|.++.. .. . ++.+.|||+.|+.-.|.++.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~---~~-~-ea~alGaa~~a~~a~G~~~~ 428 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIA---GP-V-EASTLGNIGIQLMTLDELNN 428 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeee---CC-h-hHHHHHHHHHHHHHcCCcCC
Confidence 4789999999999999999999999999966 43 3 78899999999998886654
No 92
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.70 E-value=0.04 Score=58.84 Aligned_cols=54 Identities=17% Similarity=0.039 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNR 475 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~ 475 (493)
.++.|.++||+++++...+.+...+|.++.. ..++ ++.++|||+.|+.-.|.++
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~---~~~~-e~~alGaA~lA~~~~G~~~ 462 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKV---PVVK-EATALGCAIAAGVGAGIYS 462 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEE---eccc-CchHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999987 4444 5789999999998887653
No 93
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.60 E-value=0.092 Score=47.88 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCeeeeccchHHHHHH
Q 036352 237 AQREAIKYAGDIAGLDIQGVVEDPVAAALA 266 (493)
Q Consensus 237 ~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~ 266 (493)
...+.+.++++.+|++...++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 568889999999999999999999998754
No 94
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=95.36 E-value=0.44 Score=47.95 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCC-CCCCChhHHHHhhHHHHHhhh
Q 036352 402 GAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKS-PRGVTPDEAVVIGAAIHGEKF 470 (493)
Q Consensus 402 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~-~~~~~p~~aVA~GAa~~a~~~ 470 (493)
...|.+.++... ...+.|+++||+++.|.|.++|++.++.++... .-..+++.-=|..-|++|...
T Consensus 273 A~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 273 AASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 344445554432 235689999999999999999999986333220 002445544456667666543
No 95
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=95.30 E-value=0.94 Score=43.99 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=58.4
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCeeeeccchHH-HHHHhcccCC---CCeEEEEEeC-CeeEEEEEEEeCCe
Q 036352 223 ATKAVISVPACFNEAQREAIKYA-GDIAGLDIQGVVEDPVA-AALAYGLDKR---DGLFAVYSFG-GTFEFSILEISNGV 296 (493)
Q Consensus 223 ~~~vvitVP~~~~~~~r~~l~~a-~~~aGl~~~~li~Ep~A-aa~~~~~~~~---~~~vlVvDiG-gTtdvsv~~~~~~~ 296 (493)
.....+|.|..-.++.|+.+.+. .+.....-+.+.-..+- .+..|...+- .-+-+|+|-| |-|.+- -+.++.
T Consensus 106 dh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvi--pvaEgy 183 (415)
T KOG0678|consen 106 DHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVI--PVAEGY 183 (415)
T ss_pred cceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEE--Eeecce
Confidence 35688999999889999988876 33334333333222222 2222222111 3356899999 988773 333443
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHH
Q 036352 297 IKVKAKRKSLSHGGLDFDLLLVRHLW 322 (493)
Q Consensus 297 ~~vl~~~~~~~~GG~~id~~l~~~l~ 322 (493)
. +.++-.+.++.|++++.-+...+.
T Consensus 184 V-igScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 184 V-IGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred E-EeeeeccccccCCchhHHHHHHhh
Confidence 2 233345589999999987766653
No 96
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.10 E-value=0.073 Score=53.70 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=47.2
Q ss_pred cCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 412 ANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 412 ~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.+....+...|++|||.|+...|-+.|.+.||.++.. .+-.++.|.|+|+.|+-
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~----~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 436 LGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYT----IEGPNSAALGGAYRAAY 489 (545)
T ss_pred ccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEe----ecCCchhhHHHHHHHHH
Confidence 3555557799999999999999999999999999998 47778999999999765
No 97
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.05 E-value=0.43 Score=50.56 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCeeeeccchHHHHHHh-cccCC---CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHH
Q 036352 238 QREAIKYAGDIAGLDIQGVVEDPVAAALAY-GLDKR---DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLD 312 (493)
Q Consensus 238 ~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~-~~~~~---~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~ 312 (493)
....+.++-+..|++. .+++-.+=|.+.| +.... .+..+|+|+| |+|.+++++-.+.. ...+.++|.-.
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vr 166 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT-----SLFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee-----eeeEEeccchH
Confidence 3455666667779998 5555444444433 33322 3468999999 99999987643322 23347888887
Q ss_pred HHHHHH
Q 036352 313 FDLLLV 318 (493)
Q Consensus 313 id~~l~ 318 (493)
+.+.+.
T Consensus 167 l~e~f~ 172 (496)
T PRK11031 167 WLERYF 172 (496)
T ss_pred HHHHhc
Confidence 766543
No 98
>PRK13318 pantothenate kinase; Reviewed
Probab=94.95 E-value=1 Score=43.26 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=17.2
Q ss_pred eEEEEcCCccEEEEEEeCC
Q 036352 88 VLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~ 106 (493)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 7899999999999999854
No 99
>PRK13320 pantothenate kinase; Reviewed
Probab=94.95 E-value=1.4 Score=41.91 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.6
Q ss_pred CceEEEEcCCccEEEEEEeCC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~ 106 (493)
++++.||+|+|+++.++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECC
Confidence 358999999999999999865
No 100
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.86 E-value=0.17 Score=49.04 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCeeee---ccchHHHHHHhccc----CCCCeEEEEEeC-CeeEEEEEEEe
Q 036352 225 KAVISVPACFNEAQREAIKYAGDIAGLDIQGV---VEDPVAAALAYGLD----KRDGLFAVYSFG-GTFEFSILEIS 293 (493)
Q Consensus 225 ~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~l---i~Ep~Aaa~~~~~~----~~~~~vlVvDiG-gTtdvsv~~~~ 293 (493)
.++||=-+--....|..+-.....+|==++.. -.|+.-|.-..+.. ++.-.++=+|+| ||++.+++.-+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~G 165 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAG 165 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeeccc
Confidence 45666555445556666655555555222111 23444443332222 115578889999 99999998755
No 101
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.49 E-value=0.41 Score=47.17 Aligned_cols=72 Identities=24% Similarity=0.189 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCeeeeccchHHHHHHhc-ccCC--CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 036352 240 EAIKYAGDIAGLDIQGVVEDPVAAALAYG-LDKR--DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDL 315 (493)
Q Consensus 240 ~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~-~~~~--~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~ 315 (493)
..+...-+..|++. .+++..+=|.+.|. .... ....+++|+| |+|.++++.-++.. ...+.++|...+.+
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~-----~~~Sl~lG~vrl~e 162 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG-----EGVSLPLGCVRLTE 162 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe-----EEEEEccceEEhHH
Confidence 34444555679988 66666655555443 2221 2335999999 99999987533222 23346777776665
Q ss_pred HH
Q 036352 316 LL 317 (493)
Q Consensus 316 ~l 317 (493)
.+
T Consensus 163 ~f 164 (300)
T TIGR03706 163 QF 164 (300)
T ss_pred hh
Confidence 53
No 102
>PRK13326 pantothenate kinase; Reviewed
Probab=94.45 E-value=3 Score=40.11 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.3
Q ss_pred CceEEEEcCCccEEEEEEeCCc
Q 036352 86 GNVLGIDLGTTYSRVAVMQGED 107 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~ 107 (493)
++++.||+|+|+++++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 5689999999999999998763
No 103
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=94.23 E-value=0.87 Score=43.34 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.7
Q ss_pred EEEEcCCccEEEEEEeCCc
Q 036352 89 LGIDLGTTYSRVAVMQGED 107 (493)
Q Consensus 89 vGIDlGTt~s~va~~~~~~ 107 (493)
+.||+|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 5799999999999998764
No 104
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=94.11 E-value=0.78 Score=43.71 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=42.5
Q ss_pred CCCCCEEEEecCCCCcHHHHHHHHHHhC--CCCCCCCCCCChhHHHHhhHHHHHhhhcccCCCC
Q 036352 416 RKDLDGILVVGGLGCVPSVREYMELFFG--KSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNRRE 477 (493)
Q Consensus 416 ~~~i~~VvLvGG~s~~p~v~~~l~~~fg--~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~ 477 (493)
+..+|.|+|+||.++...+-++|.+... .++.. .+..|-.+|.|.|+.. .|.|..+.+
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v-~PGE~EleALA~G~lR---VL~GeEk~k 353 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIV-YPGEDELEALAEGALR---VLRGEEKAK 353 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEe-cCCchHHHHHHhhhHH---Hhhcchhcc
Confidence 5679999999999999999999998863 22222 2367888899999863 344555444
No 105
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=94.08 E-value=1.8 Score=41.17 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCC
Q 036352 388 SEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGC 430 (493)
Q Consensus 388 ~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~ 430 (493)
+..+.+..-.+.....+|+..+++.......=..++++||.++
T Consensus 182 ~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 182 NTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 3445555566666666777666654322223459999999875
No 106
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=93.69 E-value=8 Score=38.32 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh---CCCCCCCCCCCChhHHHHhhH
Q 036352 388 SEFESLVSELIE-ETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF---GKSPLKSPRGVTPDEAVVIGA 463 (493)
Q Consensus 388 ~~~e~~~~~~i~-~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f---g~~~~~~~~~~~p~~aVA~GA 463 (493)
.++...++..+. -+.+.++..++.. .++.|+++||.+....+.+.|.+.. +.++..-....--|.++++|+
T Consensus 233 ~~iA~~~q~~l~~~l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ 307 (314)
T TIGR03723 233 ADIAASFQAAVVDVLVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAA 307 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHH
Confidence 344444444333 3334445555442 4678999999999999999999987 554444111124567778877
Q ss_pred H
Q 036352 464 A 464 (493)
Q Consensus 464 a 464 (493)
+
T Consensus 308 a 308 (314)
T TIGR03723 308 A 308 (314)
T ss_pred H
Confidence 6
No 107
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=93.51 E-value=8.4 Score=38.03 Aligned_cols=41 Identities=27% Similarity=0.195 Sum_probs=28.0
Q ss_pred HcCCCeeeeccchHHHHHHhcccC---CCCeEEEEEeC-CeeEEEEE
Q 036352 248 IAGLDIQGVVEDPVAAALAYGLDK---RDGLFAVYSFG-GTFEFSIL 290 (493)
Q Consensus 248 ~aGl~~~~li~Ep~Aaa~~~~~~~---~~~~vlVvDiG-gTtdvsv~ 290 (493)
..|+++ .+.++..|+|++..+.. ..++++++.+| |- -.+++
T Consensus 96 ~~~~pv-~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLPV-VVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCCE-EEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 447764 89999999988754432 25678888888 64 44444
No 108
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=93.45 E-value=3.2 Score=42.76 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
.+..+-+=||.++..++.+.....+|.++.+ ..-.|+.|.|||+.|..-.|.-
T Consensus 402 ~~~~LrvDGG~s~n~~lmQfqADilg~~V~R----p~~~EtTAlGaA~lAGla~G~w 454 (499)
T COG0554 402 KLTRLRVDGGASRNNFLMQFQADILGVPVER----PVVLETTALGAAYLAGLAVGFW 454 (499)
T ss_pred CceeEEEcCccccchhHHHHHHHHhCCeeec----cccchhhHHHHHHHHhhhhCcC
Confidence 5788889999999999999999999999998 4456789999999999988844
No 109
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=92.95 E-value=0.082 Score=54.37 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCCCC--CCCEEEEecCCCCcHHHHHHHHHHh------C--CCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 400 ETGAICQKCLEVANITRK--DLDGILVVGGLGCVPSVREYMELFF------G--KSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 400 ~i~~~i~~~l~~~~~~~~--~i~~VvLvGG~s~~p~v~~~l~~~f------g--~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
.|.+++...|.+...... .|..|+|+||.+.+|++.++|+..+ | .++.. ..||...+=+||+-+|+.
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~r---asdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVR---ASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEe---cCCcchhhhhhhHHhhcC
Confidence 445566666665432222 2789999999999999999998876 2 23444 889999999999999986
No 110
>PRK13324 pantothenate kinase; Reviewed
Probab=92.82 E-value=2.6 Score=40.41 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=17.2
Q ss_pred eEEEEcCCccEEEEEEeCC
Q 036352 88 VLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~ 106 (493)
++.||+|+|+++.++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 7899999999999999855
No 111
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=92.71 E-value=0.02 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.5
Q ss_pred eEEEEcCCccEEEEEEeCCce
Q 036352 88 VLGIDLGTTYSRVAVMQGEDP 108 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~~ 108 (493)
+++||+|++.+.++++..+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999987654
No 112
>PRK13322 pantothenate kinase; Reviewed
Probab=92.60 E-value=2 Score=41.01 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=16.4
Q ss_pred eEEEEcCCccEEEEEEeC
Q 036352 88 VLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~ 105 (493)
++-||+|+|+++.+++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 788999999999999875
No 113
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=92.56 E-value=1.2 Score=44.19 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhC----CCCCCCCCCCCh----hHHHHhhHHHHH
Q 036352 396 ELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFG----KSPLKSPRGVTP----DEAVVIGAAIHG 467 (493)
Q Consensus 396 ~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg----~~~~~~~~~~~p----~~aVA~GAa~~a 467 (493)
..++.+.+.|...+.. ..+++.|+|+|-.+++|-+.+.++..|+ .++.. ..+ ....|.|+|+.|
T Consensus 242 a~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~----l~~~~~~aKeaA~GaAiIA 313 (343)
T PF07318_consen 242 AMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRK----LEGLARKAKEAAQGAAIIA 313 (343)
T ss_pred HHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceee----cccccccchhhhhhHHHHh
Confidence 3444455555544433 3467899999999999999888887773 23332 222 234899999999
Q ss_pred hhhcccC
Q 036352 468 EKFRYVN 474 (493)
Q Consensus 468 ~~~~~~~ 474 (493)
.-+.|..
T Consensus 314 ~glaGG~ 320 (343)
T PF07318_consen 314 NGLAGGR 320 (343)
T ss_pred hhhhccc
Confidence 9888655
No 114
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=91.75 E-value=0.82 Score=42.94 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeCCCCCHH-HHHHHHHHHHHcCCCeeeeccchHHHHHHhc-----ccCCCCeEEEEEeC
Q 036352 209 AKMRAIGEVYLKESATKAVISVPACFNEA-QREAIKYAGDIAGLDIQGVVEDPVAAALAYG-----LDKRDGLFAVYSFG 282 (493)
Q Consensus 209 ~~l~~~~~~~~~~~~~~vvitVP~~~~~~-~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~-----~~~~~~~vlVvDiG 282 (493)
.++++.+++..+.+ ..++++-..|... .....++. |||.+.. .....+..++||+|
T Consensus 77 e~Ii~~v~~Af~~p--v~~v~~~G~~~ssEa~~~~~~v----------------AAaNW~Ata~~~~e~~~dsci~VD~G 138 (330)
T COG1548 77 EDIIDTVEKAFNCP--VYVVDVNGNFLSSEALKNPREV----------------AAANWVATARFLAEEIKDSCILVDMG 138 (330)
T ss_pred HHHHHHHHHhcCCc--eEEEeccCcCcChhHhcCHHHH----------------HHhhhHHHHHHHHHhcCCceEEEecC
Confidence 45566666666654 3778887777653 22223332 2222221 11126678999999
Q ss_pred -CeeEEEEE
Q 036352 283 -GTFEFSIL 290 (493)
Q Consensus 283 -gTtdvsv~ 290 (493)
.|+|+--+
T Consensus 139 STTtDIIPi 147 (330)
T COG1548 139 STTTDIIPI 147 (330)
T ss_pred CcccceEee
Confidence 99999544
No 115
>PRK09557 fructokinase; Reviewed
Probab=91.05 E-value=16 Score=35.70 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCC------CCCCCCCCChhHHHHhhHHHHH
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKS------PLKSPRGVTPDEAVVIGAAIHG 467 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~------~~~~~~~~~p~~aVA~GAa~~a 467 (493)
+++.|+|-||.+..+.+.+.+++.+... ...+....-...+.++|||...
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 4678888888887766666666554210 1101113334567899998764
No 116
>PRK14878 UGMP family protein; Provisional
Probab=90.64 E-value=19 Score=35.78 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHh---CCCCCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFF---GKSPLK 448 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~f---g~~~~~ 448 (493)
.++.|+|+||.+...++++.+.+.+ |.++..
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~ 274 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYV 274 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEC
Confidence 3678999999999999999999977 554444
No 117
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=89.97 E-value=0.21 Score=50.32 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCC-CCCCC-CCCCChhHHHHhhHHHHHhhh
Q 036352 394 VSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGK-SPLKS-PRGVTPDEAVVIGAAIHGEKF 470 (493)
Q Consensus 394 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~-~~~~~-~~~~~p~~aVA~GAa~~a~~~ 470 (493)
+.-+.+=+...|.+.++... .+++.|+++||+++.|.|.+.|++.++. ++... .-..+|+.-=|.+-|++|...
T Consensus 263 ~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~~ 338 (364)
T PF03702_consen 263 LATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYRR 338 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33333334445555555542 2378999999999999999999999954 33210 001233333345556666553
No 118
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=89.94 E-value=20 Score=34.91 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=91.5
Q ss_pred eeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEE---ecCCCCCchHHHHHHHHHHHHHHHhhh
Q 036352 253 IQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKA---KRKSLSHGGLDFDLLLVRHLWREFTRC 328 (493)
Q Consensus 253 ~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~---~~~~~~~GG~~id~~l~~~l~~~~~~~ 328 (493)
.+.+.++...|......+ ++. +|+=+| |+.-+.. .++...... ..-....+|.+|=..+.+.....+.
T Consensus 99 ~v~v~~Dg~iAl~ga~~~--~~G-ii~i~GTGSi~~~~---~gg~~~r~GG~Gf~IgDegSga~ig~~~L~~~lra~D-- 170 (301)
T COG2971 99 KVDVENDGLIALRGALGD--DDG-IIVIAGTGSIGYGR---KGGRRERVGGWGFPIGDEGSGAWIGREALQEALRAFD-- 170 (301)
T ss_pred eEEEecChHHHHhhccCC--CCC-EEEEecCCeEEEEE---eCCeeEEecCcCccccccchHHHHHHHHHHHHHHHhc--
Confidence 567777777665544333 223 444489 9866543 333222221 1122466889999888888877753
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccc-eEEEEcHHHHHH------HHHHHHHHH
Q 036352 329 HAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKD-LEVTITRSEFES------LVSELIEET 401 (493)
Q Consensus 329 ~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~itr~~~e~------~~~~~i~~i 401 (493)
+..... .-+++.+..|..+.+.-+. +.+.. ++.+ .--.+++.-|+- +--.++++.
T Consensus 171 -G~~~~t---------~L~d~v~~~f~~d~edlv~--~~y~a------~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~a 232 (301)
T COG2971 171 -GRREAT---------PLTDAVMAEFNLDPEDLVA--FIYKA------GPGDKKIAALAPAVFEAARKGDPVAIRILKEA 232 (301)
T ss_pred -CCccCC---------hHHHHHHHHhCCCHHHHHH--HHHhc------CCchHHHHHhhHHHHHHHHcCCHHHHHHHHHH
Confidence 222111 0122233332221110000 00000 0000 000112222221 112355555
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEecCCCCc-HHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhc
Q 036352 402 GAICQKCLEVANITRKDLDGILVVGGLGCV-PSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFR 471 (493)
Q Consensus 402 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~-p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~ 471 (493)
...|...++.... ......+.+.||.... +...+..++..-.+ |...+..||.+.|....
T Consensus 233 a~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~---------~~~D~~~GA~~~A~~~~ 293 (301)
T COG2971 233 AAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVP---------PIGDALSGAVLLALGRF 293 (301)
T ss_pred HHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCC---------ccccHHHHHHHHHHHhh
Confidence 5666666665432 2345689999998877 88888888775333 34457788888886543
No 119
>PRK13329 pantothenate kinase; Reviewed
Probab=89.25 E-value=12 Score=35.80 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.7
Q ss_pred eEEEEcCCccEEEEEEe
Q 036352 88 VLGIDLGTTYSRVAVMQ 104 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~ 104 (493)
++-||.|+|.++.++++
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 78899999999999887
No 120
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=89.17 E-value=26 Score=35.13 Aligned_cols=41 Identities=20% Similarity=0.473 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh
Q 036352 397 LIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF 442 (493)
Q Consensus 397 ~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f 442 (493)
.++-+.+.+.++++.. .++.++++||.+...+|++.+++..
T Consensus 247 v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 247 IFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 4455556666666653 4678999999999999999999987
No 121
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.92 E-value=5.6 Score=39.63 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=88.8
Q ss_pred CCeEEEEEeCCeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHhhhccCCC--CCCHHHHHHHHHHHHHH
Q 036352 273 DGLFAVYSFGGTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHAFDA--SHYPLVLQRFLGAAERA 350 (493)
Q Consensus 273 ~~~vlVvDiGgTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~--~~~~~~~~rL~~~~e~~ 350 (493)
+...+|+++||-..++++.-... ++ ..+..-|-.-||..+.++-.+.|.+.-..-. .-+.....+++ .
T Consensus 162 ~~~r~vlNiGGIaNlt~l~~~~~---v~--g~DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~ll~~ll-----~ 231 (371)
T COG2377 162 RERRAVLNIGGIANLTYLPPGGP---VL--GFDTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEALLARLL-----A 231 (371)
T ss_pred CCCeEEEeccceEEEEecCCCCc---ee--eeecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCHHHHHHHh-----h
Confidence 67899999998888887765543 33 3444567777888887776655432211100 11222333332 1
Q ss_pred HHHcCCCCceEEEEecccchhhhccccccceEEE-----------EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 036352 351 KVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVT-----------ITRSEFESLVSELIEETGAICQKCLEVANITRKDL 419 (493)
Q Consensus 351 K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i 419 (493)
+.-|+.. ..++.+...+... ++.+++...+.++- ..-|-+.+ ..-..+.
T Consensus 232 ~p~F~~~--------------~PkStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~elt---A~tIv~s~---~~~~~~p 291 (371)
T COG2377 232 HPYFALP--------------APKSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVELT---AATIVKSV---ATLQGDP 291 (371)
T ss_pred CCcccCC--------------CcccCCccccchhhHHHHHhhccCCCHHHHHHHHHHHH---HHHHHHHH---hhccCCC
Confidence 1111111 0111111222221 33333333222211 11122222 2224567
Q ss_pred CEEEEecCCCCcHHHHHHHHHHh-CCCCCCC-CCCCChhHHHHhhHHHHHhhh
Q 036352 420 DGILVVGGLGCVPSVREYMELFF-GKSPLKS-PRGVTPDEAVVIGAAIHGEKF 470 (493)
Q Consensus 420 ~~VvLvGG~s~~p~v~~~l~~~f-g~~~~~~-~~~~~p~~aVA~GAa~~a~~~ 470 (493)
+.++++||+.+.|.+.+.|...+ |..+... .-..+++.-=|.+-|+.|.+.
T Consensus 292 ~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 292 RRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 89999999999999999999999 5444320 013466666677778777765
No 122
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=34 Score=36.10 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=65.4
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHH-HHHHHHhCCCCCCCCCCCChhHHHHh
Q 036352 383 VTITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVR-EYMELFFGKSPLKSPRGVTPDEAVVI 461 (493)
Q Consensus 383 ~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~-~~l~~~fg~~~~~~~~~~~p~~aVA~ 461 (493)
....-.++...++..++++.-.+-..+.+.. ..+.+.+.||.+..-... +.+.+.+..++.. +|---|.-.|.
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV--~Pa~gD~G~Av 327 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFV--QPAMGDAGLAV 327 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEe--cCCCCCcchHH
Confidence 3444556777778888888777666666531 256999999988776666 6677766666665 24556678999
Q ss_pred hHHHHHhhhcccCCCCCCCCCCc
Q 036352 462 GAAIHGEKFRYVNRREPPNEGAL 484 (493)
Q Consensus 462 GAa~~a~~~~~~~~~~~~~~~~~ 484 (493)
|||+++....+.... |+....+
T Consensus 328 GAAl~~~~~~~~~~~-~~~l~~~ 349 (555)
T COG2192 328 GAALAVKRELGGAAR-PPRLEHV 349 (555)
T ss_pred HHHHHHHHHhcCCCC-ccccccc
Confidence 999999887766555 4344433
No 123
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=88.69 E-value=15 Score=38.72 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCeeeeccchHHHHHHhcc--cCC-CCeEEEEEeC-CeeEEEEEEE
Q 036352 239 REAIKYAGDIAGLDIQGVVEDPVAAALAYGL--DKR-DGLFAVYSFG-GTFEFSILEI 292 (493)
Q Consensus 239 r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~--~~~-~~~vlVvDiG-gTtdvsv~~~ 292 (493)
-+.+..+-+..|++.-.+--|-+|-..+.+. ... ....+|+|+| |+|.+++...
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecC
Confidence 4556667777899884444455554333332 223 6788999999 9999998763
No 124
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=88.66 E-value=4.9 Score=38.14 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=56.6
Q ss_pred CCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccCC---CCeEEEEEeC-CeeEEEEEEEe
Q 036352 220 KESATKAVI--SVPACFNEAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDKR---DGLFAVYSFG-GTFEFSILEIS 293 (493)
Q Consensus 220 ~~~~~~vvi--tVP~~~~~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~---~~~vlVvDiG-gTtdvsv~~~~ 293 (493)
+..+..++. .+|.+|+. .+.+++.+...|.+. .+.+--.||.+..+.+.. ...+++||+| |.|-.+++ .
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v--~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALV--K 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEE--e
Confidence 445567777 78887653 345555555556555 455555666666666544 6789999999 88777766 4
Q ss_pred CCeEEEEEecCCCCCchHHHHHHHH
Q 036352 294 NGVIKVKAKRKSLSHGGLDFDLLLV 318 (493)
Q Consensus 294 ~~~~~vl~~~~~~~~GG~~id~~l~ 318 (493)
++.+.-+.-.....+-.+.+...|.
T Consensus 186 ~~rI~GvfEHHT~~l~~~kL~~~l~ 210 (254)
T PF08735_consen 186 DGRIYGVFEHHTGMLTPEKLEEYLE 210 (254)
T ss_pred CCEEEEEEecccCCCCHHHHHHHHH
Confidence 4444333333334555554444433
No 125
>PRK09604 UGMP family protein; Validated
Probab=88.26 E-value=30 Score=34.62 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh---CCCCCCCCCCCChhHHHHhhHHHHHhhhccc
Q 036352 402 GAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF---GKSPLKSPRGVTPDEAVVIGAAIHGEKFRYV 473 (493)
Q Consensus 402 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f---g~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 473 (493)
.+.++..++. .+++.|+|+||.+....+++.|.+.+ |.++..-....--|.++++|++=+-....|.
T Consensus 243 ~~~~~~~~~~-----~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g~ 312 (332)
T PRK09604 243 VIKTKRALKQ-----TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAGE 312 (332)
T ss_pred HHHHHHHHHH-----hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 3444455443 34679999999999999999999988 5544441111245778899988666555563
No 126
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=88.11 E-value=2.3 Score=41.21 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=43.1
Q ss_pred CCEEEEecC--CCCcH-HHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCC
Q 036352 419 LDGILVVGG--LGCVP-SVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNR 475 (493)
Q Consensus 419 i~~VvLvGG--~s~~p-~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~ 475 (493)
...|+|+|- .++.| .+++.|++.|..++.. .+. +..|+|+|+.|.-+.+..+
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~----L~~-ksAA~G~AiIA~dI~gGk~ 317 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV----LDS-ESAAIGLALIAEDIFSGKR 317 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEE----ecc-hhhhhhHHHHHHHHhCCcc
Confidence 358999997 89999 9999999999877766 333 7899999999988776554
No 127
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=86.33 E-value=5.9 Score=36.69 Aligned_cols=54 Identities=20% Similarity=0.458 Sum_probs=35.7
Q ss_pred EEcHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh
Q 036352 384 TITRSEFESLVSE-LIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF 442 (493)
Q Consensus 384 ~itr~~~e~~~~~-~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f 442 (493)
..+.+++---+++ .+.-+.+.-++++..++ -+.|++|||.+..--+|+++....
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc 278 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMC 278 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHH
Confidence 4455554433333 44444555556666543 358999999999999999998776
No 128
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=86.27 E-value=0.11 Score=45.43 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=38.4
Q ss_pred hhccccCCCCCchhhhHHHHHhhhhhccccC-CCCCCceEEEEcCCccEEEEEEeCC
Q 036352 51 LANKVVSPEPKFVPAMHHCLVSSMSLARNFS-SKSQGNVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivGIDlGTt~s~va~~~~~ 106 (493)
-+-..| +|+|.++...+.+. ++.+.|+ .|.-.-++|+|+||+|+++++.++.
T Consensus 25 ~~~~~~--~p~w~~s~~~qn~a--~~sra~~~kp~~~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 25 SLAGNA--QPSWGSSYIGQNYA--SFSRAFGSKPVVNDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred HhhcCC--CCCccccccccchH--HHHHHhcCCCCccceeccCCCcchHHHHHHhcc
Confidence 344555 45788888888773 3455665 6777889999999999999887644
No 129
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=84.79 E-value=31 Score=37.84 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=18.9
Q ss_pred CCCCceEEEEcCCccEEEEEEe
Q 036352 83 KSQGNVLGIDLGTTYSRVAVMQ 104 (493)
Q Consensus 83 ~~~~~ivGIDlGTt~s~va~~~ 104 (493)
...++++|||+|.|++++|+++
T Consensus 15 ~~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 15 HADGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCCCEEEEEcCchhheeeeec
Confidence 4456799999999999999884
No 130
>PLN02405 hexokinase
Probab=83.77 E-value=16 Score=38.56 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHcCCC--eeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEE
Q 036352 235 NEAQREAIKYAGDIAGLD--IQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFS 288 (493)
Q Consensus 235 ~~~~r~~l~~a~~~aGl~--~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvs 288 (493)
...-.+.|++|++..|++ +..++++.++..++..+..+ .+.+-+=+| ||=-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~-~~~iG~IlGTGtNacY 259 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP-DVVAAVILGTGTNAAY 259 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC-CceEEEEEeCCeeeEE
Confidence 445688899999888874 57789999999887766553 344444478 654333
No 131
>PRK09698 D-allose kinase; Provisional
Probab=83.73 E-value=46 Score=32.53 Aligned_cols=34 Identities=15% Similarity=-0.011 Sum_probs=23.8
Q ss_pred cCCCeeeeccchHHHHHHhcccC--CCCeEEEEEeC-C
Q 036352 249 AGLDIQGVVEDPVAAALAYGLDK--RDGLFAVYSFG-G 283 (493)
Q Consensus 249 aGl~~~~li~Ep~Aaa~~~~~~~--~~~~vlVvDiG-g 283 (493)
.|+++ .+.++..|++++-.... ...+++.+.+| |
T Consensus 104 ~~~pv-~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG 140 (302)
T PRK09698 104 LNCPV-FFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG 140 (302)
T ss_pred hCCCE-EEcchHhHHHHHHHHhcCCCCceEEEEEecCc
Confidence 47765 88999999887644322 24578888888 5
No 132
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.52 E-value=5.9 Score=37.49 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=54.7
Q ss_pred eCCCCCHHHHHHHHHHHHH---cCCCeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCC
Q 036352 230 VPACFNEAQREAIKYAGDI---AGLDIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKS 305 (493)
Q Consensus 230 VP~~~~~~~r~~l~~a~~~---aGl~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~ 305 (493)
+|.+|+ .|+.++.. ++-. ..+.+.-.||+...+.+......+|||+| |.+..+++.- +.+.-+.....
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dpaa~palvVd~GngHttaalvde--dRI~gv~EHHT 257 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDE--DRIVGVYEHHT 257 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecC--CeEEEEeeccc
Confidence 566655 34443332 3333 35556666666666666666689999999 9988887753 34444444444
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 036352 306 LSHGGLDFDLLLVRHLWREF 325 (493)
Q Consensus 306 ~~~GG~~id~~l~~~l~~~~ 325 (493)
..+.-+.+...|.++..-++
T Consensus 258 ~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 258 IRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred ccCCHHHHHHHHHHHHhccc
Confidence 66677777666666665554
No 133
>PLN02596 hexokinase-like
Probab=83.49 E-value=6 Score=41.57 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHcCC--CeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEE
Q 036352 235 NEAQREAIKYAGDIAGL--DIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSIL 290 (493)
Q Consensus 235 ~~~~r~~l~~a~~~aGl--~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~ 290 (493)
...-.+.+++|++..|+ +++.++++.++..++..+..+ +..+-+=+| ||=-..+-
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~-~~~iG~I~GTGtNacY~E 261 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK-DTVAAVTLGMGTNAAYVE 261 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC-CeEEEEEEecccceEEEE
Confidence 34445566777766665 567889999999887777653 333333478 65433333
No 134
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=82.68 E-value=4.6 Score=40.85 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=58.7
Q ss_pred EEEcHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCC-CCCCCCCCChhHHHH
Q 036352 383 VTITRSEFESLVSELIEETG-AICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKS-PLKSPRGVTPDEAVV 460 (493)
Q Consensus 383 ~~itr~~~e~~~~~~i~~i~-~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~-~~~~~~~~~p~~aVA 460 (493)
..-.+.++...++..+++++ ..++..+++.+.+ +.|.|.||.+..-.....|.+..+.+ +.. .|.--|.-+|
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~----~~L~laGGvaLN~~~N~~l~~~~~~~~v~V--~Pa~gD~G~a 204 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTGID----NNLCLAGGVALNCKANGRLLEEPGFDNVFV--PPAAGDAGLA 204 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT------SEEEEESGGGG-HHHHHHHHTSTT-SEEE----TTTSGGGHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CeEEEechHHHHHHHHHHHHhcCCCCeEEE--CCCCCCcchH
Confidence 34577888888888887774 5666777765522 24999999999888888888875433 332 2556778899
Q ss_pred hhHHHHHhhhccc
Q 036352 461 IGAAIHGEKFRYV 473 (493)
Q Consensus 461 ~GAa~~a~~~~~~ 473 (493)
+|||+++....+.
T Consensus 205 iGaA~~~~~~~~~ 217 (360)
T PF02543_consen 205 IGAALYAWHELGG 217 (360)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999976655
No 135
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=82.40 E-value=4.8 Score=44.54 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=38.3
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhC---CCCCCCCCCCChhHHHHhhHHHHHh
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFG---KSPLKSPRGVTPDEAVVIGAAIHGE 468 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg---~~~~~~~~~~~p~~aVA~GAa~~a~ 468 (493)
.++.|+|+||.++...+.+.+.+.++ .++....+..-.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 47799999999999999999998873 3443311123457899999988874
No 136
>PTZ00107 hexokinase; Provisional
Probab=82.07 E-value=14 Score=38.68 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--CeeeeccchHHHHHHhcccCC---CCeEEEEEeC-Ce
Q 036352 231 PACFNEAQREAIKYAGDIAGL--DIQGVVEDPVAAALAYGLDKR---DGLFAVYSFG-GT 284 (493)
Q Consensus 231 P~~~~~~~r~~l~~a~~~aGl--~~~~li~Ep~Aaa~~~~~~~~---~~~vlVvDiG-gT 284 (493)
|..-...-.+.|++|+++.|+ +++.++++.+|..++..+..+ +...+-+=+| ||
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~ 248 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGS 248 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccc
Confidence 444445568889999998887 467889999999887776652 3334334467 65
No 137
>PRK00976 hypothetical protein; Provisional
Probab=81.97 E-value=8.9 Score=37.89 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=40.1
Q ss_pred CCCEEEEecCCCCcH--HHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 418 DLDGILVVGGLGCVP--SVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p--~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
+++.|+|-||.++.+ .+.+.+++.+...+. .-..++-++|||+.|....+..
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a-----~LG~dAGaiGAA~iA~~i~~G~ 316 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKVL-----VLGKESAAIGLALIARDIFNGK 316 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccccc-----ccCCchHHHHHHHHHHHHhCCC
Confidence 477999999999998 899999988854422 2344889999999998765443
No 138
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=81.66 E-value=17 Score=35.89 Aligned_cols=33 Identities=30% Similarity=0.175 Sum_probs=24.1
Q ss_pred cCCCeeeeccchHHHHHHhcccCC---CCeEEEEEeC
Q 036352 249 AGLDIQGVVEDPVAAALAYGLDKR---DGLFAVYSFG 282 (493)
Q Consensus 249 aGl~~~~li~Ep~Aaa~~~~~~~~---~~~vlVvDiG 282 (493)
.|+++ .+-++..|+|++-.+... ...++.+-+|
T Consensus 106 ~~~Pv-~veNDan~aalaE~~~g~~~~~~~~~~i~~g 141 (314)
T COG1940 106 LGLPV-FVENDANAAALAEAWFGAGRGIDDVVYITLG 141 (314)
T ss_pred HCCCE-EEecHHHHHHHHHHHhCCCCCCCCEEEEEEc
Confidence 46666 899999999998765432 4567777777
No 139
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=80.65 E-value=1.9 Score=41.99 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCeeeeccchHHHHHHh-c--ccC-CCCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHH
Q 036352 240 EAIKYAGDIAGLDIQGVVEDPVAAALAY-G--LDK-RDGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFD 314 (493)
Q Consensus 240 ~~l~~a~~~aGl~~~~li~Ep~Aaa~~~-~--~~~-~~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id 314 (493)
..+.+.-+..|++. .+++..+=|.+.| + ... .....+++|+| |+|.+++++-+... ...+.++|.-.+.
T Consensus 75 ~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vrl~ 148 (285)
T PF02541_consen 75 EFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV-----FSQSLPLGAVRLT 148 (285)
T ss_dssp HHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE-----EEEEES--HHHHH
T ss_pred HHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee-----EeeeeehHHHHHH
Confidence 33455556679988 5555444333332 1 111 36678999999 99999877532222 2334788988877
Q ss_pred HHH
Q 036352 315 LLL 317 (493)
Q Consensus 315 ~~l 317 (493)
+.+
T Consensus 149 e~~ 151 (285)
T PF02541_consen 149 ERF 151 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 140
>PLN02914 hexokinase
Probab=80.60 E-value=15 Score=38.60 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHcCC--CeeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEE
Q 036352 235 NEAQREAIKYAGDIAGL--DIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSIL 290 (493)
Q Consensus 235 ~~~~r~~l~~a~~~aGl--~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~ 290 (493)
...-.+.|++|++..|+ ++..++++.++..++..+..+ +..+-+=+| ||=-+.+-
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~-~~~iGlIlGTGtNacY~E 261 (490)
T PLN02914 204 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD-DVMVAVILGTGTNACYVE 261 (490)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC-CceEEEEEECCeeeEEEe
Confidence 44568889999888776 567789999999887766653 334444478 65444333
No 141
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=79.71 E-value=2.1 Score=40.64 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=17.4
Q ss_pred ceEEEEcCCccEEEEEEeCC
Q 036352 87 NVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~ 106 (493)
+++|||+|||+++++.++..
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 48999999999999998733
No 142
>PRK03011 butyrate kinase; Provisional
Probab=78.41 E-value=11 Score=38.09 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=38.7
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCC-CCCCCCCCCChhHHHHhhHHHHHhhhcccCCC
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGK-SPLKSPRGVTPDEAVVIGAAIHGEKFRYVNRR 476 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~-~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~ 476 (493)
+++.|+|+||.+..+.+.+.|++.+.. .+..+....+-.++.+.||+.. +.|....
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv---l~g~e~~ 351 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV---LRGEEEA 351 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH---HcCCccc
Confidence 689999999999999999999887732 1111122556678999997643 4454443
No 143
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=77.73 E-value=2.3 Score=33.83 Aligned_cols=19 Identities=42% Similarity=0.529 Sum_probs=16.6
Q ss_pred ceEEEEcCCccEEEEEEeC
Q 036352 87 NVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~ 105 (493)
.++|||+|.|++++|+.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3899999999999998853
No 144
>PLN02666 5-oxoprolinase
Probab=77.67 E-value=27 Score=41.31 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=51.0
Q ss_pred EEcHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCC-CCCCCCCCChhHHHHh
Q 036352 384 TITRSEFESLVSELIE-ETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKS-PLKSPRGVTPDEAVVI 461 (493)
Q Consensus 384 ~itr~~~e~~~~~~i~-~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~-~~~~~~~~~p~~aVA~ 461 (493)
.++-++..+-+..+.+ ...+.|+......+.++.+. .++..||++ |...-.|.+.+|.+ +.. +.+|.-..|+
T Consensus 453 g~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~viv---P~~~gv~sA~ 526 (1275)
T PLN02666 453 DMSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFV---HRYCGILSAY 526 (1275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEe---CCCccHHHHH
Confidence 4455555554444333 33445555555555554332 444456655 88899999999988 666 7889888999
Q ss_pred hHHHHHhh
Q 036352 462 GAAIHGEK 469 (493)
Q Consensus 462 GAa~~a~~ 469 (493)
|+++.-.+
T Consensus 527 G~~~ad~~ 534 (1275)
T PLN02666 527 GMGLADVV 534 (1275)
T ss_pred HHHhhhhh
Confidence 99875544
No 145
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=77.42 E-value=2.4 Score=41.51 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHH
Q 036352 395 SELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIH 466 (493)
Q Consensus 395 ~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~ 466 (493)
+-..+.+.+.|++.....+..+.+. .++.+||.+ |.+...+.+.+|.+... .+..|.-+.|.|+++-
T Consensus 218 ~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~--~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 218 RIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVV--PPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEE-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccc--cccccccccccccccc
Confidence 3344455555555544434443222 445556666 78888888888876554 1555678889999864
No 146
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=76.29 E-value=4.1 Score=39.50 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCEEEE-ecCCCCcHHHHHHHHHHhCCCC
Q 036352 400 ETGAICQKCLEVANITRKDLDGILV-VGGLGCVPSVREYMELFFGKSP 446 (493)
Q Consensus 400 ~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~v~~~l~~~fg~~~ 446 (493)
-+...+++.|+++++++.+||.+|+ +..++-.|.+..+|-+.||...
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr~ 133 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMRS 133 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCCc
Confidence 4567788889999999999998876 6678899999999999998654
No 147
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=75.75 E-value=1.2e+02 Score=32.51 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh---CCCCCCCCCCCChhHHHHhhHHHHHhhhccc
Q 036352 401 TGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF---GKSPLKSPRGVTPDEAVVIGAAIHGEKFRYV 473 (493)
Q Consensus 401 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f---g~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 473 (493)
+.+.+.++++.. .++.|+|+||.+...++++.|.+.+ +.++..-....-.|.++++|++.+.....+.
T Consensus 233 l~~~~~~~~~~~-----g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g~ 303 (535)
T PRK09605 233 LTEVTERALAHT-----GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAGD 303 (535)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcCC
Confidence 334444554443 3668999999999999999999665 4444441111246688899888765554443
No 148
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=75.07 E-value=86 Score=30.60 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCC------CCCCCCCCChhHHHHhhHHHHHh
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKS------PLKSPRGVTPDEAVVIGAAIHGE 468 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~------~~~~~~~~~p~~aVA~GAa~~a~ 468 (493)
+++.|+|-||.+..+.+.+.+++.+... ...+........+.++|||..+.
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 4678888777776666666666655211 11111134556788999998763
No 149
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=75.02 E-value=59 Score=28.72 Aligned_cols=40 Identities=28% Similarity=0.209 Sum_probs=27.6
Q ss_pred cCCCeeeeccchHHHHHHhcccCC---CCeEEEEEeC-CeeEEEEE
Q 036352 249 AGLDIQGVVEDPVAAALAYGLDKR---DGLFAVYSFG-GTFEFSIL 290 (493)
Q Consensus 249 aGl~~~~li~Ep~Aaa~~~~~~~~---~~~vlVvDiG-gTtdvsv~ 290 (493)
.++++ .+.++..|+|++...... ...++.+-+| | +-.+++
T Consensus 91 ~~~pv-~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 91 FGVPV-IIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HTSEE-EEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred cceEE-EEecCCCcceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 46655 889999999987765332 5678888888 6 344444
No 150
>PLN02362 hexokinase
Probab=74.94 E-value=41 Score=35.67 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHcCC--CeeeeccchHHHHHHhcccCCCCeEEEEEeC-Ce
Q 036352 235 NEAQREAIKYAGDIAGL--DIQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GT 284 (493)
Q Consensus 235 ~~~~r~~l~~a~~~aGl--~~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gT 284 (493)
...-.+.|.+|++..|+ ++..++++.++..++..+.. +++.+-+=+| ||
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~-~~~~iG~IlGTGt 255 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD-PDTVAAVIIGTGT 255 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC-CCceEEEEEECCc
Confidence 44568889999988886 56788999999988766654 3344444467 65
No 151
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=74.64 E-value=11 Score=37.25 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=35.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh
Q 036352 390 FESLVSE-LIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF 442 (493)
Q Consensus 390 ~e~~~~~-~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f 442 (493)
+..-+++ .++-+.+..+++++..+ .+.++++||.+....+|+++++..
T Consensus 237 ia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 237 IAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 4444443 55666667777777654 558999999999999999998865
No 152
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=74.57 E-value=91 Score=30.67 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh
Q 036352 387 RSEFESLVSE-LIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF 442 (493)
Q Consensus 387 r~~~e~~~~~-~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f 442 (493)
+.++...++. +.+-+.+.+++.++.. .++.|+|+||.+....+++.|.+.+
T Consensus 231 ~~~iAasfq~~l~~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 231 KEDIAYSFQETAFDHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3444444444 3333345555555543 4679999999999999999999887
No 153
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=74.49 E-value=3.9 Score=43.46 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.2
Q ss_pred CCceEEEEcCCccEEEEEEeCC
Q 036352 85 QGNVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 85 ~~~ivGIDlGTt~s~va~~~~~ 106 (493)
+.+++|||+|||++++..++.+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 4679999999999999998655
No 154
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.31 E-value=3.5 Score=35.31 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.5
Q ss_pred ceEEEEcCCccEEEEEEeCCc
Q 036352 87 NVLGIDLGTTYSRVAVMQGED 107 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~ 107 (493)
.++|||+|+..+++|+.+...
T Consensus 2 riL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTT
T ss_pred eEEEEEeCCCeEEEEEecCCC
Confidence 489999999999999987664
No 155
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=74.15 E-value=3.4 Score=41.78 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.3
Q ss_pred CceEEEEcCCccEEEEEEeCCc
Q 036352 86 GNVLGIDLGTTYSRVAVMQGED 107 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~~ 107 (493)
.+++|||+|++.|++.+.++++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 4699999999999999997664
No 156
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=72.81 E-value=4.3 Score=34.91 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=18.2
Q ss_pred CceEEEEcCCccEEEEEEeCC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~ 106 (493)
+.++|||+|+..+++|+.+..
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 459999999999999987653
No 157
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=70.24 E-value=3.8 Score=39.10 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=16.8
Q ss_pred eEEEEcCCccEEEEEEeCC
Q 036352 88 VLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~ 106 (493)
++|||+|||++++++++++
T Consensus 2 ~lGIDiGtts~K~vl~d~g 20 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDG 20 (248)
T ss_pred EEEEEcChhheEEEEEcCC
Confidence 7899999999999998743
No 158
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=69.40 E-value=4.8 Score=43.00 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.0
Q ss_pred CceEEEEcCCccEEEEEEeCC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~ 106 (493)
.+++|||+|||++++++++..
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 469999999999999998533
No 159
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=69.13 E-value=8.5 Score=37.46 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=61.1
Q ss_pred hhhhhhhhhhhh---cccccccccccccccccccHHHHHhhccccCCCCCchhhhHHHHHhhhhhccccCCCCCCceEEE
Q 036352 15 PKTLEKYEQLCE---LSRAYPLAKTSASSVSQGCREFLKLANKVVSPEPKFVPAMHHCLVSSMSLARNFSSKSQGNVLGI 91 (493)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivGI 91 (493)
-.+|.++.++|. +.+-.++ -|||=-.-.|+.+|++.+++..-=.-.....-....++++.....+ +.....+-|
T Consensus 41 ~~~L~~f~~~~~~~~v~~i~~v-ATsA~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l--~~~~~~lvi 117 (285)
T PF02541_consen 41 IDALKRFKEILKDYGVEKIRAV-ATSALREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSL--PPDKNGLVI 117 (285)
T ss_dssp HHHHHHHHHHHHHTTGSEEEEE-EEHHHHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS--TTTSSEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-hhHHHHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhc--cccCCEEEE
Confidence 346667777764 4556666 4777777889999999999865111133333344445554444333 345668889
Q ss_pred EcCCccEEEEEEeCCceE
Q 036352 92 DLGTTYSRVAVMQGEDPV 109 (493)
Q Consensus 92 DlGTt~s~va~~~~~~~~ 109 (493)
|+|..+|-+++.+++.+.
T Consensus 118 DIGGGStEl~~~~~~~~~ 135 (285)
T PF02541_consen 118 DIGGGSTELILFENGKVV 135 (285)
T ss_dssp EEESSEEEEEEEETTEEE
T ss_pred EECCCceEEEEEECCeee
Confidence 999999999999888653
No 160
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=68.92 E-value=1.3e+02 Score=29.92 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=31.6
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHh---CCCCCCCCCCCChhHHHHhh
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFF---GKSPLKSPRGVTPDEAVVIG 462 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~f---g~~~~~~~~~~~p~~aVA~G 462 (493)
.++.|+|+||.+....+.+.|.+.+ |.++..-....-.|.++++|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 3668999999999999999999965 44444311111346677777
No 161
>PLN02920 pantothenate kinase 1
Probab=68.64 E-value=64 Score=32.83 Aligned_cols=51 Identities=16% Similarity=0.009 Sum_probs=37.1
Q ss_pred CCCCCEEEEecCCCCcH-HHHHHHHHH---h---CCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 416 RKDLDGILVVGGLGCVP-SVREYMELF---F---GKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 416 ~~~i~~VvLvGG~s~~p-~v~~~l~~~---f---g~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
..+++.|+++|+..+.+ ..++.|... + +.+... .-+....-|+||.+....
T Consensus 295 ~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~F---LrHeGYlGAlGAfl~~~~ 352 (398)
T PLN02920 295 RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMF---LRHEGFLGALGAFMSYEK 352 (398)
T ss_pred HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEE---ecCcchhHHHHHHHhccc
Confidence 45688999999999988 777755433 2 234454 678888999999966544
No 162
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=68.38 E-value=28 Score=35.67 Aligned_cols=57 Identities=30% Similarity=0.491 Sum_probs=35.1
Q ss_pred cccccHHHHHhhccccCCCC-CchhhhHHHHHhhhhhccccCCCCCCceEEEEcCCccEEEEEE
Q 036352 41 VSQGCREFLKLANKVVSPEP-KFVPAMHHCLVSSMSLARNFSSKSQGNVLGIDLGTTYSRVAVM 103 (493)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivGIDlGTt~s~va~~ 103 (493)
.-+=..+|.....|+..|+. .+.+..-.+ + .+.=.+...+.++.||||.||.++|.+
T Consensus 35 l~~v~~~Fieel~kgL~~~~G~~l~MIP~~-v-----~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 35 LREVVKAFIEELEKGLQPKSGDFLPMIPTW-V-----APLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred HHHHHHHHHHHHHhccCCCCCCcccccccc-c-----cCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 44556788888888885431 111111111 1 111113566789999999999999987
No 163
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=66.69 E-value=7.5 Score=34.10 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=15.8
Q ss_pred eEEEEcCCccEEEEEEe
Q 036352 88 VLGIDLGTTYSRVAVMQ 104 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~ 104 (493)
|+|||.|++++..|+.+
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 89999999999999874
No 164
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=66.58 E-value=5.7 Score=42.21 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=17.2
Q ss_pred ceEEEEcCCccEEEEEEeC
Q 036352 87 NVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~ 105 (493)
.++|||+|||++++++++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 5999999999999999854
No 165
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=66.57 E-value=22 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=26.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 036352 225 KAVISVPACFNEAQREAIKYAGDIAGLDI 253 (493)
Q Consensus 225 ~vvitVP~~~~~~~r~~l~~a~~~aGl~~ 253 (493)
...++.|+.++..+|..+.+.|+..||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67889999999999999999999999865
No 166
>PRK07058 acetate kinase; Provisional
Probab=66.53 E-value=74 Score=32.47 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCC-CcHHHHHHHHHHhC
Q 036352 393 LVSELIEETGAICQKCLEVANITRKDLDGILVVGGLG-CVPSVREYMELFFG 443 (493)
Q Consensus 393 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~fg 443 (493)
+++-++.++.+.|-...... ..+|.|+++||-+ +.+.+++.+.+.++
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34445556666665555543 3599999999999 99999999998763
No 167
>PLN02377 3-ketoacyl-CoA synthase
Probab=66.28 E-value=9.4 Score=40.35 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEE-ecCCCCcHHHHHHHHHHhCCC
Q 036352 390 FESLVSELIEETGAICQKCLEVANITRKDLDGILV-VGGLGCVPSVREYMELFFGKS 445 (493)
Q Consensus 390 ~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~v~~~l~~~fg~~ 445 (493)
++...++..+-+...++++|+++++++.+||.|++ +.+....|.+..+|.+.+|..
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 44445555556678888999999999999999988 445556899999999999875
No 168
>PF13941 MutL: MutL protein
Probab=65.81 E-value=6.5 Score=40.86 Aligned_cols=42 Identities=33% Similarity=0.739 Sum_probs=31.5
Q ss_pred eEEEEcCCccEEEEEEe--CCceEEEEccCCCccccCCCcccceEEEEccCCcceecH
Q 036352 88 VLGIDLGTTYSRVAVMQ--GEDPVVIEEVEGGRYTKKSFRSMPSVVFFKPNGESWVGR 143 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~--~~~~~vi~~~~g~~~~~~~~~~iPS~i~~~~~~~~~~G~ 143 (493)
++.+|||||+|++..++ .+.++++... ..||.+ .+ +.+..|.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a-----------~apTTv--~~-~Dv~~G~ 45 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQA-----------EAPTTV--EP-GDVTIGL 45 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEE-----------eCCCCc--Cc-ccHHHHH
Confidence 68899999999999998 7788888433 667776 23 4566663
No 169
>PRK10331 L-fuculokinase; Provisional
Probab=65.70 E-value=5.4 Score=41.96 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=17.0
Q ss_pred ceEEEEcCCccEEEEEEeC
Q 036352 87 NVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~ 105 (493)
.++|||+|||++++++++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~ 21 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDR 21 (470)
T ss_pred eEEEEecCCCceEEEEEcC
Confidence 5899999999999999853
No 170
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=65.20 E-value=70 Score=27.93 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCC-----CCCCCEEEEecCCCCcHHHHHHHHHHhCCCCC-CCCCCCChhHHHHhhHHH
Q 036352 399 EETGAICQKCLEVANIT-----RKDLDGILVVGGLGCVPSVREYMELFFGKSPL-KSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 399 ~~i~~~i~~~l~~~~~~-----~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~-~~~~~~~p~~aVA~GAa~ 465 (493)
......+..++...+++ +..+...+.-=|.+.=.-++.++++.++.+.. . +.|...|.|.+.|-
T Consensus 81 ~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~~mv~~~l~~~~~~~---~~d~aDAlaiA~~~ 150 (154)
T cd00529 81 GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQHMVKRLLNLSEIPK---PDDAADALAVAITH 150 (154)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCHHHHHHHHHHH
Confidence 33455555566655544 45555555422555556788999999987654 3 56777777777553
No 171
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=64.52 E-value=7.3 Score=33.57 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=18.2
Q ss_pred CceEEEEcCCccEEEEEEeCC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~ 106 (493)
..++|||+|+..++||+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 469999999999999997654
No 172
>PLN02669 xylulokinase
Probab=63.53 E-value=8.4 Score=41.50 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.8
Q ss_pred CCCCCceEEEEcCCccEEEEEEeCC
Q 036352 82 SKSQGNVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 82 ~~~~~~ivGIDlGTt~s~va~~~~~ 106 (493)
-|....++|||+||+.+++++++..
T Consensus 4 ~~~~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 4 LPEDSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCCCCeEEEEecccCCeEEEEEcCC
Confidence 3566789999999999999998533
No 173
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=63.13 E-value=1.4e+02 Score=28.35 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=23.9
Q ss_pred cCCCeeeeccchHHHHHHhcccCC---CCeEEEEEeC
Q 036352 249 AGLDIQGVVEDPVAAALAYGLDKR---DGLFAVYSFG 282 (493)
Q Consensus 249 aGl~~~~li~Ep~Aaa~~~~~~~~---~~~vlVvDiG 282 (493)
.++++ .+.++..|+|++..+... .+.++.+-+|
T Consensus 96 ~~~pV-~leNDanaaAlaE~~~g~~~~~~~~v~i~lg 131 (256)
T PRK13311 96 IQREV-RIDNDANCFALSEAWDPEFRTYPTVLGLILG 131 (256)
T ss_pred HCCCE-EEEchhhHHHHHHHHhcCCCCCCcEEEEEEC
Confidence 47765 889999999987765432 5677777777
No 174
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=63.01 E-value=7.3 Score=40.92 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.4
Q ss_pred ceEEEEcCCccEEEEEEeCC
Q 036352 87 NVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~ 106 (493)
.++|||+|||++++++++..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 48999999999999999543
No 175
>PRK15027 xylulokinase; Provisional
Probab=61.60 E-value=7.5 Score=41.07 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=16.5
Q ss_pred eEEEEcCCccEEEEEEeC
Q 036352 88 VLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~ 105 (493)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_pred EEEEEecccceEEEEEcC
Confidence 799999999999999854
No 176
>PRK13328 pantothenate kinase; Reviewed
Probab=61.34 E-value=30 Score=33.13 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.6
Q ss_pred eEEEEcCCccEEEEEEeCC
Q 036352 88 VLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~ 106 (493)
++-||+|+|.++.++.+.+
T Consensus 3 ~LliDiGNTriKwa~~~~~ 21 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAG 21 (255)
T ss_pred EEEEEeCccceeEEEEcCC
Confidence 7889999999999988744
No 177
>PLN02192 3-ketoacyl-CoA synthase
Probab=61.06 E-value=14 Score=39.14 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEec-CCCCcHHHHHHHHHHhCCC
Q 036352 390 FESLVSELIEETGAICQKCLEVANITRKDLDGILVVG-GLGCVPSVREYMELFFGKS 445 (493)
Q Consensus 390 ~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvG-G~s~~p~v~~~l~~~fg~~ 445 (493)
+++..++.-.-+...++++|+++++++.+||.|++.. +....|.+..+|.+.+|..
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 3444444555567788899999999999999988753 2345899999999999865
No 178
>PRK04123 ribulokinase; Provisional
Probab=60.25 E-value=8.5 Score=41.38 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.3
Q ss_pred CceEEEEcCCccEEEEEEe
Q 036352 86 GNVLGIDLGTTYSRVAVMQ 104 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~ 104 (493)
.+++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 3699999999999999997
No 179
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=59.40 E-value=9.3 Score=40.97 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=16.9
Q ss_pred ceEEEEcCCccEEEEEEe
Q 036352 87 NVLGIDLGTTYSRVAVMQ 104 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~ 104 (493)
+++|||+||+.+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 489999999999999998
No 180
>PLN02854 3-ketoacyl-CoA synthase
Probab=59.39 E-value=14 Score=39.16 Aligned_cols=54 Identities=9% Similarity=0.077 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEE-ecCCCCcHHHHHHHHHHhCCC
Q 036352 392 SLVSELIEETGAICQKCLEVANITRKDLDGILV-VGGLGCVPSVREYMELFFGKS 445 (493)
Q Consensus 392 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~v~~~l~~~fg~~ 445 (493)
+..++.-.-+...++++|+++++++++||.||+ +.+....|.+..+|.+.+|..
T Consensus 183 ~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 183 EARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 333333444566777888999999999999997 445556899999999999865
No 181
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=59.35 E-value=8.8 Score=40.81 Aligned_cols=19 Identities=26% Similarity=0.677 Sum_probs=16.7
Q ss_pred ceEEEEcCCccEEEEEEeC
Q 036352 87 NVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~ 105 (493)
+++|||+|||++++++++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 3799999999999999854
No 182
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=59.35 E-value=25 Score=33.97 Aligned_cols=72 Identities=22% Similarity=0.149 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCCCC--CCCEEEEecCCCC-cHHHHHHHHHHh-C---CCCCCCCCCCChhHHHHhhHHHHHhhhc
Q 036352 399 EETGAICQKCLEVANITRK--DLDGILVVGGLGC-VPSVREYMELFF-G---KSPLKSPRGVTPDEAVVIGAAIHGEKFR 471 (493)
Q Consensus 399 ~~i~~~i~~~l~~~~~~~~--~i~~VvLvGG~s~-~p~v~~~l~~~f-g---~~~~~~~~~~~p~~aVA~GAa~~a~~~~ 471 (493)
+-+-..|..+|.+.+.... ..-.|+++||.-. ...+++-....+ + .+... ...|.+.-|.|||++|+.+.
T Consensus 242 ~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~---l~~~k~ssAvgAA~laa~~~ 318 (336)
T KOG1794|consen 242 ETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVE---LYRPKESSAVGAAILAASLD 318 (336)
T ss_pred HHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceE---EEeecccchHHHHHHhhhhc
Confidence 3344555666665543322 2458999999654 444444333332 1 12222 45688899999999999988
Q ss_pred cc
Q 036352 472 YV 473 (493)
Q Consensus 472 ~~ 473 (493)
+.
T Consensus 319 ~~ 320 (336)
T KOG1794|consen 319 NI 320 (336)
T ss_pred cc
Confidence 73
No 183
>PRK00047 glpK glycerol kinase; Provisional
Probab=59.08 E-value=9.7 Score=40.39 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.4
Q ss_pred CceEEEEcCCccEEEEEEeC
Q 036352 86 GNVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~ 105 (493)
.+++|||+|||++++++++.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CEEEEEecCCCceEEEEECC
Confidence 35999999999999999853
No 184
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=58.66 E-value=9.5 Score=40.42 Aligned_cols=19 Identities=47% Similarity=0.597 Sum_probs=16.9
Q ss_pred ceEEEEcCCccEEEEEEeC
Q 036352 87 NVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~ 105 (493)
.++|||+|||++++++++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred eEEEEecCCCceEEEEECC
Confidence 4899999999999999853
No 185
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=57.37 E-value=24 Score=36.74 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=44.7
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCC---eeeeccchHHHHHHhcccCCCCeEEEEEeC-CeeEEEEEEEe
Q 036352 230 VPACFNEAQREAIKYAGDIAGLD---IQGVVEDPVAAALAYGLDKRDGLFAVYSFG-GTFEFSILEIS 293 (493)
Q Consensus 230 VP~~~~~~~r~~l~~a~~~aGl~---~~~li~Ep~Aaa~~~~~~~~~~~vlVvDiG-gTtdvsv~~~~ 293 (493)
++......-.+.+.++++.-|+. +..++++.++...+..+.. +++++-|=+| ||=-.-+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-CCcEEEEEECCCccceeeeecc
Confidence 34445556678899999999886 5678899999887766655 4566667789 87655555444
No 186
>PLN02295 glycerol kinase
Probab=57.10 E-value=10 Score=40.40 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=16.3
Q ss_pred eEEEEcCCccEEEEEEeC
Q 036352 88 VLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~ 105 (493)
++|||+|||++++++++.
T Consensus 2 vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred EEEEecCCCceEEEEECC
Confidence 799999999999999853
No 187
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=56.99 E-value=3.3 Score=42.73 Aligned_cols=54 Identities=28% Similarity=0.263 Sum_probs=41.8
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCC----------CCCCC--CCCCChhHHHHhhHHHHHhhhc
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGK----------SPLKS--PRGVTPDEAVVIGAAIHGEKFR 471 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~----------~~~~~--~~~~~p~~aVA~GAa~~a~~~~ 471 (493)
-.+.|.+|||+...|++++.|++.... ++..+ .+.+||...+=.|||++|..-.
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 348899999999999999999987621 12222 2358999999999999998744
No 188
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=56.95 E-value=10 Score=40.66 Aligned_cols=18 Identities=28% Similarity=0.691 Sum_probs=16.3
Q ss_pred eEEEEcCCccEEEEEEeC
Q 036352 88 VLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~ 105 (493)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 799999999999999853
No 189
>PRK13331 pantothenate kinase; Reviewed
Probab=56.02 E-value=64 Score=30.82 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.6
Q ss_pred CCceEEEEcCCccEEEEEEeCCc
Q 036352 85 QGNVLGIDLGTTYSRVAVMQGED 107 (493)
Q Consensus 85 ~~~ivGIDlGTt~s~va~~~~~~ 107 (493)
...++.||+|+|+++++++++++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECCE
Confidence 34599999999999999998653
No 190
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=55.17 E-value=49 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=27.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 036352 224 TKAVISVPACFNEAQREAIKYAGDIAGLDI 253 (493)
Q Consensus 224 ~~vvitVP~~~~~~~r~~l~~a~~~aGl~~ 253 (493)
....++.|+.++..+|..+.+.|+..||..
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 367889999999999999999999999976
No 191
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=53.82 E-value=53 Score=33.10 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhC--CCCCCCCCCCChhHHHHhhHHH
Q 036352 393 LVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFG--KSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 393 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg--~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
+++.+...+...|-...... ..+++.|++.||.+..+.+.+.+.+.+. .++.. ....+-.++.|.||..
T Consensus 271 a~d~~~~~la~~Ia~l~~~l---~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~-~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 271 ILDAMAYQIAKEIGKMAVVL---KGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLV-YPGEDEMEALAEGALR 341 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEE-eCCcHHHHHHHHhHHH
Confidence 33444444444444444432 1257899999999999989999988873 33333 2245566788888763
No 192
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=53.62 E-value=6.1 Score=36.55 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCC---eeeeccchHHHHHHhcc
Q 036352 236 EAQREAIKYAGDIAGLD---IQGVVEDPVAAALAYGL 269 (493)
Q Consensus 236 ~~~r~~l~~a~~~aGl~---~~~li~Ep~Aaa~~~~~ 269 (493)
..-.+.+.++....|++ ++.++++.+|..++..+
T Consensus 168 ~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 168 KDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp SBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 34467778888888876 56778999998887654
No 193
>PLN03170 chalcone synthase; Provisional
Probab=51.70 E-value=34 Score=35.22 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCC-CcHHHHHHHHHHhCCCCC
Q 036352 396 ELIEETGAICQKCLEVANITRKDLDGILVVGGLG-CVPSVREYMELFFGKSPL 447 (493)
Q Consensus 396 ~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~fg~~~~ 447 (493)
...+=..+..+++|+++++++++|+.|+++-.+. .+|.+.-.|.+.+|.+..
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~ 157 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPS 157 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCcc
Confidence 3444456788999999999999999988766444 699999999999986553
No 194
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=51.61 E-value=17 Score=32.34 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.9
Q ss_pred CceEEEEcCCccEEEEEEe
Q 036352 86 GNVLGIDLGTTYSRVAVMQ 104 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~ 104 (493)
..++|||-|++++..|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 3599999999999999874
No 195
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=51.55 E-value=39 Score=33.16 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=56.5
Q ss_pred hhhhhhhhhhhc---ccccccccccccccccccHHHHHhhccccCCCCCchhhhHHHHHhhhhhccccCCCCCCceEEEE
Q 036352 16 KTLEKYEQLCEL---SRAYPLAKTSASSVSQGCREFLKLANKVVSPEPKFVPAMHHCLVSSMSLARNFSSKSQGNVLGID 92 (493)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivGID 92 (493)
.+|.++.|+|.- .+-.++ -|+|--...++.+|+..|++..--.-.+...--...+.+......+.. ...+-+|
T Consensus 56 ~~l~~f~~~~~~~~v~~i~~v-aTsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~---~~~~v~D 131 (300)
T TIGR03706 56 EALKRFAELLRGFPVDEVRAV-ATAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPI---ADGLVVD 131 (300)
T ss_pred HHHHHHHHHHHhCCCCeEEEE-EcHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCC---CCcEEEE
Confidence 567788877752 233455 455555678999999999886522224444444444544443333221 2259999
Q ss_pred cCCccEEEEEEeCCce
Q 036352 93 LGTTYSRVAVMQGEDP 108 (493)
Q Consensus 93 lGTt~s~va~~~~~~~ 108 (493)
+|..++-+++.+++.+
T Consensus 132 iGGGSte~~~~~~~~~ 147 (300)
T TIGR03706 132 IGGGSTELILGKDFEP 147 (300)
T ss_pred ecCCeEEEEEecCCCE
Confidence 9999999999877654
No 196
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=49.89 E-value=26 Score=30.53 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=13.6
Q ss_pred eEEEEcCCccEEEEEEe
Q 036352 88 VLGIDLGTTYSRVAVMQ 104 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~ 104 (493)
|+|||-|++++..|+.+
T Consensus 1 ILGIDPgl~~tG~avi~ 17 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIE 17 (149)
T ss_dssp EEEEE--SSEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEE
Confidence 68999999999999984
No 197
>PLN02932 3-ketoacyl-CoA synthase
Probab=49.05 E-value=35 Score=35.92 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEe-cCCCCcHHHHHHHHHHhCCC
Q 036352 389 EFESLVSELIEETGAICQKCLEVANITRKDLDGILVV-GGLGCVPSVREYMELFFGKS 445 (493)
Q Consensus 389 ~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLv-GG~s~~p~v~~~l~~~fg~~ 445 (493)
.++...++.-.-..+.++++|+++++++++|+.||++ ......|.+..+|.+.+|.+
T Consensus 140 ~~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lGlr 197 (478)
T PLN02932 140 NLAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFKLR 197 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhCCC
Confidence 4455555555566778899999999999999999763 33457999999999999875
No 198
>PRK00865 glutamate racemase; Provisional
Probab=48.57 E-value=42 Score=32.23 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=34.8
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHH
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHG 467 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a 467 (493)
.++.|+| |.+.+|++.+.+++.++.++. ..||.+++|.=+.-+.
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~~~v~----vIDp~~~~a~~~~~~l 220 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLGEGVT----LIDSGEAIARRVARLL 220 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcCCCCE----EECCHHHHHHHHHHHH
Confidence 5778877 889999999999999886654 3889888887776544
No 199
>PLN03173 chalcone synthase; Provisional
Probab=47.88 E-value=39 Score=34.62 Aligned_cols=50 Identities=8% Similarity=0.125 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCC-CcHHHHHHHHHHhCCCC
Q 036352 397 LIEETGAICQKCLEVANITRKDLDGILVVGGLG-CVPSVREYMELFFGKSP 446 (493)
Q Consensus 397 ~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~fg~~~ 446 (493)
..+=..+.++++|+++++++.+|+.|+++..+. ..|.+.-.|.+.+|...
T Consensus 102 a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 444446788999999999999999998876444 58999999999998655
No 200
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.84 E-value=22 Score=39.11 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=27.3
Q ss_pred eeeeccchHHHHHHhccc--CCCCeEEEEEeC-CeeEEEEEEE
Q 036352 253 IQGVVEDPVAAALAYGLD--KRDGLFAVYSFG-GTFEFSILEI 292 (493)
Q Consensus 253 ~~~li~Ep~Aaa~~~~~~--~~~~~vlVvDiG-gTtdvsv~~~ 292 (493)
...+.+=|.|..++..+- ...++++++|+| +|||++++.-
T Consensus 255 v~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~ 297 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIID 297 (674)
T ss_pred eeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeec
Confidence 334566777766654443 112269999999 9999998874
No 201
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=46.74 E-value=50 Score=34.00 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHH
Q 036352 391 ESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVR 435 (493)
Q Consensus 391 e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~ 435 (493)
+++-+-+++.+.+++.+.+.+++..+.+|..++++|-++-...+.
T Consensus 56 ~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLll 100 (412)
T PF14574_consen 56 EELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLL 100 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHc
Confidence 334455667888889999999999999999999999765444333
No 202
>PRK10854 exopolyphosphatase; Provisional
Probab=45.37 E-value=56 Score=34.86 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=60.7
Q ss_pred hhhhhhhhhhhh---cccccccccccccccccccHHHHHhhccccCCCCCchhhhHHHHHhhhhhccccCCCCCCceEEE
Q 036352 15 PKTLEKYEQLCE---LSRAYPLAKTSASSVSQGCREFLKLANKVVSPEPKFVPAMHHCLVSSMSLARNFSSKSQGNVLGI 91 (493)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivGI 91 (493)
-.+|.++.|+|. +.+-.+| -|+|=-...|+.+|++.+++..-=.-.....--...+++..+...+ +.....+-|
T Consensus 66 ~~~L~~F~~~~~~~~v~~v~~v-ATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l--~~~~~~lvv 142 (513)
T PRK10854 66 LNCLSLFAERLQGFSPANVCIV-GTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQ--PEKGRKLVI 142 (513)
T ss_pred HHHHHHHHHHHHhCCCCeEEEE-ehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhccc--CCCCCeEEE
Confidence 346777888774 2455666 6777778889999999999865112233333444445544433322 223468999
Q ss_pred EcCCccEEEEEEeCCceE
Q 036352 92 DLGTTYSRVAVMQGEDPV 109 (493)
Q Consensus 92 DlGTt~s~va~~~~~~~~ 109 (493)
|+|...|-+.+++++.+.
T Consensus 143 DIGGGStEl~~~~~~~~~ 160 (513)
T PRK10854 143 DIGGGSTELVIGENFEPI 160 (513)
T ss_pred EeCCCeEEEEEecCCCee
Confidence 999999999999887653
No 203
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=44.96 E-value=46 Score=24.08 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=26.5
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 036352 224 TKAVISVPACFNEAQREAIKYAGDIAGLDI 253 (493)
Q Consensus 224 ~~vvitVP~~~~~~~r~~l~~a~~~aGl~~ 253 (493)
..-.++.|+.+++.+|..+...|...|+..
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 356778899999999999999999999865
No 204
>PLN00415 3-ketoacyl-CoA synthase
Probab=43.34 E-value=35 Score=35.62 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEecCC-CCcHHHHHHHHHHhCCC
Q 036352 400 ETGAICQKCLEVANITRKDLDGILVVGGL-GCVPSVREYMELFFGKS 445 (493)
Q Consensus 400 ~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~v~~~l~~~fg~~ 445 (493)
-+...++++|+++++++.+||.|++++.. ...|.+...+.+.+|..
T Consensus 137 ~i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LGLr 183 (466)
T PLN00415 137 VIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLK 183 (466)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhCCC
Confidence 44567788889999999999998865433 25899999999999875
No 205
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=43.30 E-value=17 Score=30.87 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=14.9
Q ss_pred EEEEcCCccEEEEEEeC
Q 036352 89 LGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 89 vGIDlGTt~s~va~~~~ 105 (493)
+|||+|+..+++|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 58999999999998754
No 206
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.16 E-value=50 Score=31.51 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=43.2
Q ss_pred eEEEEEeC-CeeEEEEEEEeC-CeE----------------------EEEEecCCCCCchHHHHHHHHHHHHHHHhhhcc
Q 036352 275 LFAVYSFG-GTFEFSILEISN-GVI----------------------KVKAKRKSLSHGGLDFDLLLVRHLWREFTRCHA 330 (493)
Q Consensus 275 ~vlVvDiG-gTtdvsv~~~~~-~~~----------------------~vl~~~~~~~~GG~~id~~l~~~l~~~~~~~~~ 330 (493)
.+|++|+| ||.|+-.+.-.. ..+ .-+...| ...||--++.++.+++..- +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~G----~- 75 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKKG----T- 75 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhcC----C-
Confidence 57999999 999997765421 000 1122333 5779999999999888653 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 036352 331 FDASHYPLVLQRFLGAAERAKV 352 (493)
Q Consensus 331 ~~~~~~~~~~~rL~~~~e~~K~ 352 (493)
.+-...++...+.+..|+.++
T Consensus 76 -rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 76 -RVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred -eeEechhhhhhhhcCHHHHHh
Confidence 222233444445555565554
No 207
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=42.86 E-value=88 Score=30.33 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCC----CCCCCCCChhHHHHhhHHHHHh
Q 036352 393 LVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSP----LKSPRGVTPDEAVVIGAAIHGE 468 (493)
Q Consensus 393 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~----~~~~~~~~p~~aVA~GAa~~a~ 468 (493)
+++.....+-..+....... +++.|+|-|+.+..+.+.+.+++.+.... ..+........+.+.|||..+.
T Consensus 213 ~~~~~~~~la~~l~~l~~~~-----dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 213 LINRSAQAIARLIADLKATL-----DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 34444444444444444332 46789998887776666677766653211 0011133456788999998865
Q ss_pred h
Q 036352 469 K 469 (493)
Q Consensus 469 ~ 469 (493)
.
T Consensus 288 ~ 288 (291)
T PRK05082 288 G 288 (291)
T ss_pred c
Confidence 3
No 208
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=42.84 E-value=1.1e+02 Score=22.05 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=26.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCee
Q 036352 225 KAVISVPACFNEAQREAIKYAGDIAGLDIQ 254 (493)
Q Consensus 225 ~vvitVP~~~~~~~r~~l~~a~~~aGl~~~ 254 (493)
...+..|+.++..+|..+.+.|+..||...
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 367899999999999999999999998763
No 209
>PLN03172 chalcone synthase family protein; Provisional
Probab=42.34 E-value=48 Score=34.01 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCC-CcHHHHHHHHHHhCCCC
Q 036352 395 SELIEETGAICQKCLEVANITRKDLDGILVVGGLG-CVPSVREYMELFFGKSP 446 (493)
Q Consensus 395 ~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~fg~~~ 446 (493)
+...+=..+..+++|+++++++.+|+.|+++-.+. .+|.+.-.|.+.+|.+.
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 33444556788999999999999999998766544 69999999999998655
No 210
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=41.77 E-value=37 Score=35.79 Aligned_cols=20 Identities=50% Similarity=0.689 Sum_probs=17.7
Q ss_pred CceEEEEcCCccEEEEEEeC
Q 036352 86 GNVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~ 105 (493)
..++|||.|||.+++++++.
T Consensus 6 ~~~~gIDvGTtSaR~~v~~~ 25 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFNA 25 (516)
T ss_pred ceEEEEEcCCCceEEEEEec
Confidence 45999999999999999863
No 211
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=41.70 E-value=63 Score=30.82 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHH
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
+++.|+| |.+..|++.+.+++.++.++. ..||.+++|.=+.-
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v~----~IDp~~~la~~~~~ 213 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHVR----LVDSGVHTARRTAW 213 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCcE----EECCHHHHHHHHHH
Confidence 5778776 999999999999999987654 48998888876653
No 212
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=41.04 E-value=63 Score=34.29 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=58.2
Q ss_pred hhhhhhhhhhhc---ccccccccccccccccccHHHHHhhccccCCCCCchhhhHHHHHhhhhhccccCCCCCCceEEEE
Q 036352 16 KTLEKYEQLCEL---SRAYPLAKTSASSVSQGCREFLKLANKVVSPEPKFVPAMHHCLVSSMSLARNFSSKSQGNVLGID 92 (493)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivGID 92 (493)
.+|.++.++|.- .+-.+| -|||=-...++.+|++.+++..-=.-+....--+..+++..+...+ +.....+-||
T Consensus 62 ~~L~~F~~~~~~~~v~~i~~v-ATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l--~~~~~~lviD 138 (496)
T PRK11031 62 QCLRLFAERLQDIPPSQIRVV-ATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTT--GGADQRLVVD 138 (496)
T ss_pred HHHHHHHHHHHhCCCCeEEEE-EeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhcc--CCCCCEEEEE
Confidence 456777777743 234455 5677777889999999999976112233333344445544433332 2223589999
Q ss_pred cCCccEEEEEEeCCce
Q 036352 93 LGTTYSRVAVMQGEDP 108 (493)
Q Consensus 93 lGTt~s~va~~~~~~~ 108 (493)
+|...|-+.+++++.+
T Consensus 139 IGGGStEl~~~~~~~~ 154 (496)
T PRK11031 139 IGGASTELVTGTGAQA 154 (496)
T ss_pred ecCCeeeEEEecCCce
Confidence 9999999999887765
No 213
>PRK13331 pantothenate kinase; Reviewed
Probab=40.59 E-value=34 Score=32.68 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHH
Q 036352 391 ESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELF 441 (493)
Q Consensus 391 e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~ 441 (493)
+.+-.-.+.....+|+..+++......+. .|+++||.+ +.+...++..
T Consensus 177 ~ai~sGi~~g~~g~i~~~i~~~~~~~~~~-~vi~TGG~a--~~l~~~~~~~ 224 (251)
T PRK13331 177 EAIQSGVIYTILAGLRDFIEDWLSLFPDG-KIVLTGGDG--ELLHNYLQDL 224 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCCH--HHHHHHhhcc
Confidence 33333455555555555444321111122 799999976 4566655544
No 214
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=40.23 E-value=21 Score=35.32 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCC
Q 036352 397 LIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLK 448 (493)
Q Consensus 397 ~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~ 448 (493)
....+.+.++..+.+.+.+ . +..||.+ |.+...+.+.+|.+...
T Consensus 261 ~~~~m~~ai~~v~~~~G~D-----p-v~~gGaG--~~~a~~lA~~lg~~~v~ 304 (318)
T TIGR03123 261 QLEQLTEAIEEVLERYGLK-----T-VVAAGAG--EFLAKEAAARLGRECID 304 (318)
T ss_pred HHHHHHHHHHHHHHHcCCC-----C-eEEecch--HHHHHHHHHHcCCCeec
Confidence 3344555566665554444 3 5556666 88888888888766543
No 215
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=40.12 E-value=31 Score=30.99 Aligned_cols=18 Identities=28% Similarity=0.774 Sum_probs=16.0
Q ss_pred EEEEcCCccEEEEEEeCC
Q 036352 89 LGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 89 vGIDlGTt~s~va~~~~~ 106 (493)
||||.|.|+|=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999998888666
No 216
>PRK13327 pantothenate kinase; Reviewed
Probab=39.86 E-value=87 Score=29.73 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 390 FESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 390 ~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
-+.+..-.+......|+..+++.......--.|+++||.+. .+.+ .+.. . ..+|+ -|-.|..++|..
T Consensus 172 ~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~~~vilTGG~A~--~l~~----~l~~--~----~~~p~-LvL~GL~~~a~~ 238 (242)
T PRK13327 172 DDALTSGCDGAAVALIERSLQHAHRSLGQPVRLLVHGGGAP--PLLP----LLPD--A----EFRPA-LVLDGLATWATA 238 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HHHH----hCCC--C----EEccC-cHHHHHHHHHHh
Confidence 34444445555566666555543211111237999999874 3333 3321 1 23343 477888888764
No 217
>PRK12408 glucokinase; Provisional
Probab=39.81 E-value=22 Score=35.64 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.5
Q ss_pred CCCCceEEEEcCCccEEEEEEeC
Q 036352 83 KSQGNVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 83 ~~~~~ivGIDlGTt~s~va~~~~ 105 (493)
+.+..++|||+|.|++++++++.
T Consensus 13 ~~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 13 PRPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred cccccEEEEEcChhhhheeEEec
Confidence 45566999999999999999853
No 218
>PRK00292 glk glucokinase; Provisional
Probab=37.86 E-value=32 Score=33.92 Aligned_cols=36 Identities=31% Similarity=0.189 Sum_probs=26.1
Q ss_pred HHcCCCeeeeccchHHHHHHhccc---------C-C---CCeEEEEEeC
Q 036352 247 DIAGLDIQGVVEDPVAAALAYGLD---------K-R---DGLFAVYSFG 282 (493)
Q Consensus 247 ~~aGl~~~~li~Ep~Aaa~~~~~~---------~-~---~~~vlVvDiG 282 (493)
+..|++.+.+.++..|+|++-... . + ...++++-+|
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~G 136 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPG 136 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcC
Confidence 345887679999999999985431 1 1 2578888888
No 219
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=36.75 E-value=1.2e+02 Score=31.19 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCC-CcHHHHHHHHHHhC
Q 036352 393 LVSELIEETGAICQKCLEVANITRKDLDGILVVGGLG-CVPSVREYMELFFG 443 (493)
Q Consensus 393 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~fg 443 (493)
+++-++.++.+.|-...... ...+|.|+++||.+ +.+.|++.+.+.++
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33445555555555555443 14699999999999 99999999998774
No 220
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=34.60 E-value=1.1e+02 Score=21.69 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 036352 211 MRAIGEVYLKESATKAVISVPACFNEAQREAIKYAGDIAGLDI 253 (493)
Q Consensus 211 l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a~~~aGl~~ 253 (493)
+.+..+..+... .-.++.|+ .+..+|..+.+.|...|+..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 333444444332 55678998 89999999999999999865
No 221
>PLN03168 chalcone synthase; Provisional
Probab=34.41 E-value=68 Score=32.86 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCC-CCcHHHHHHHHHHhCCCC
Q 036352 395 SELIEETGAICQKCLEVANITRKDLDGILVVGGL-GCVPSVREYMELFFGKSP 446 (493)
Q Consensus 395 ~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~v~~~l~~~fg~~~ 446 (493)
+...+=..+..+++|+++++++++|+.|+++-.+ -.+|.+.-.|.+.+|.+.
T Consensus 99 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 99 VQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 3444445778899999999999999999875332 358999999999998654
No 222
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=34.11 E-value=2.3e+02 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=21.6
Q ss_pred EEEEEeC-CeeEEEEEEEeCCeEEEEEec
Q 036352 276 FAVYSFG-GTFEFSILEISNGVIKVKAKR 303 (493)
Q Consensus 276 vlVvDiG-gTtdvsv~~~~~~~~~vl~~~ 303 (493)
||-+|-| ..|-.++++..+..++.+.+.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G 29 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYG 29 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeC
Confidence 5789999 999999999988887776543
No 223
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=33.17 E-value=2.7e+02 Score=25.99 Aligned_cols=54 Identities=20% Similarity=0.133 Sum_probs=39.8
Q ss_pred CeEeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeee
Q 036352 195 FGIFSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYAGDIAGLDIQG 255 (493)
Q Consensus 195 ~~~~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~ 255 (493)
|+.++.++++... +..+..+ +...+.+|||....-.++..|-...+.+|.+.++
T Consensus 97 Gr~f~a~eVL~Lt-----~~tR~LL--P~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQ 150 (242)
T PF04481_consen 97 GRRFSAEEVLALT-----RETRSLL--PDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQ 150 (242)
T ss_pred CCeecHHHHHHHH-----HHHHHhC--CCCceEEecCccccHHHHHHHHHHHHHhCCcEEE
Confidence 5688888885543 3334434 3368999999999999988888888888876544
No 224
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=32.70 E-value=38 Score=33.12 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=25.6
Q ss_pred CeeeeccchHHHHHHhcc-cCCCCeEEEEEeC-CeeEEEEEE
Q 036352 252 DIQGVVEDPVAAALAYGL-DKRDGLFAVYSFG-GTFEFSILE 291 (493)
Q Consensus 252 ~~~~li~Ep~Aaa~~~~~-~~~~~~vlVvDiG-gTtdvsv~~ 291 (493)
+...+.+-|.|.+..... ....++++++|+| +|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAARLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH--HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhhhcCCCCCEEEEeCCCCEEEEEEEE
Confidence 455667778777766555 2226689999999 999999985
No 225
>PRK09604 UGMP family protein; Validated
Probab=32.45 E-value=1.4e+02 Score=29.81 Aligned_cols=67 Identities=24% Similarity=0.345 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHH------HHHHHhCCCCCCCCCCCChhHHHHhhHHH
Q 036352 395 SELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVRE------YMELFFGKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 395 ~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~------~l~~~fg~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
+...+.+...++++|+.++++..+|+.|.++.|=...++++- .|...+++++. ..+-.++-|..+.+
T Consensus 49 ~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~~ipl~----~v~h~~~ha~~a~~ 121 (332)
T PRK09604 49 RAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPLI----GVNHLEGHLLAPFL 121 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHhCCCEE----eecCHHHHHHhhhh
Confidence 456678888999999999999999999999998888888754 44444566654 46666666664443
No 226
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=32.31 E-value=97 Score=32.77 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=59.5
Q ss_pred hhhhhhhhhhcccccc---cccccccccccccHHHHHhhccccCCCCCchhhhHHHHHhhhhhccccCCCCCCceEEEEc
Q 036352 17 TLEKYEQLCELSRAYP---LAKTSASSVSQGCREFLKLANKVVSPEPKFVPAMHHCLVSSMSLARNFSSKSQGNVLGIDL 93 (493)
Q Consensus 17 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivGIDl 93 (493)
+|.++.++|+-..+=. + -|+|-=.-.++.+|+..|+|+.--.-+...--.+..++++.+...+.. ....+-||+
T Consensus 60 aL~~f~e~~~~~~~~~v~~v-ATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~--~~~~lv~DI 136 (492)
T COG0248 60 ALKRFAELLDGFGAEEVRVV-ATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR--KGDGLVIDI 136 (492)
T ss_pred HHHHHHHHHhhCCCCEEEEe-hhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC--CCCEEEEEe
Confidence 4556666665444433 4 466666778999999999999822222222223333554444433322 667999999
Q ss_pred CCccEEEEEEeCCce-EEEEccCC
Q 036352 94 GTTYSRVAVMQGEDP-VVIEEVEG 116 (493)
Q Consensus 94 GTt~s~va~~~~~~~-~vi~~~~g 116 (493)
|...|-++..++..+ ..++.+-|
T Consensus 137 GGGStEl~~g~~~~~~~~~Sl~~G 160 (492)
T COG0248 137 GGGSTELVLGDNFEIGLLISLPLG 160 (492)
T ss_pred cCCeEEEEEecCCccceeEEeecc
Confidence 999999998876665 33433333
No 227
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.70 E-value=1.8e+02 Score=31.98 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCCCEEEEecCCCCcHHHHHHHHHHhCC---CCCCCCCCCChhHHHHhhHHHHHh
Q 036352 417 KDLDGILVVGGLGCVPSVREYMELFFGK---SPLKSPRGVTPDEAVVIGAAIHGE 468 (493)
Q Consensus 417 ~~i~~VvLvGG~s~~p~v~~~l~~~fg~---~~~~~~~~~~p~~aVA~GAa~~a~ 468 (493)
..|+.|+|+||.....++.+.+.+.++. ++....+...-|-.++.|=++.++
T Consensus 692 ~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~~ 746 (750)
T COG0068 692 YGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAAA 746 (750)
T ss_pred cCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHHH
Confidence 4578999999999999999999888843 332211234456788899888874
No 228
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=30.53 E-value=33 Score=35.59 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=20.7
Q ss_pred cCCCCCCCCEEEEecC-CCCcH--HHHHHHHH
Q 036352 412 ANITRKDLDGILVVGG-LGCVP--SVREYMEL 440 (493)
Q Consensus 412 ~~~~~~~i~~VvLvGG-~s~~p--~v~~~l~~ 440 (493)
.|.+...++.|+-+|| .++.| ...+.++.
T Consensus 383 ~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~ 414 (463)
T TIGR01319 383 IGKDLLNVKCVIGSGGVLSHASQFDMGEILKA 414 (463)
T ss_pred cCCCchhCcEEEEeCcceeCCCCcCHHHHHhh
Confidence 3445567899999999 56776 66777754
No 229
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=29.85 E-value=2.8e+02 Score=29.31 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCeEEEEEeC-CeeEEEEEEEeCCeEEEEE-ecCCCCCchHHHHHHHH
Q 036352 273 DGLFAVYSFG-GTFEFSILEISNGVIKVKA-KRKSLSHGGLDFDLLLV 318 (493)
Q Consensus 273 ~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~-~~~~~~~GG~~id~~l~ 318 (493)
..+-+-+|+| +++-.-++.+..+...-.. +....--||+++|....
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 3456889999 9999999998877644433 33434459999887654
No 230
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=29.65 E-value=1.9e+02 Score=29.74 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCC-CcHHHHHHHHHHhC
Q 036352 395 SELIEETGAICQKCLEVANITRKDLDGILVVGGLG-CVPSVREYMELFFG 443 (493)
Q Consensus 395 ~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~fg 443 (493)
+-++.++.+.|-......+ ..+|.|+++||.+ +.+.|++.+.+.++
T Consensus 307 ~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 307 KMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3345555555555544432 2489999999999 89999999998764
No 231
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=29.57 E-value=1.8e+02 Score=28.52 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHH------HHHHHhCCCCCCCCCCCChhHHHHhhHHH
Q 036352 394 VSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVRE------YMELFFGKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 394 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~------~l~~~fg~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
.+...+.+..+++++|+.++++..+|+.|.++-|=...++++- .|...+++++.. .+-.++-|.-+.+
T Consensus 45 ~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~~~----v~hl~~ha~~a~~ 118 (305)
T TIGR00329 45 SRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPLIG----VNHLLGHIYAPRL 118 (305)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEee----cccHHHHHHHhhh
Confidence 3456778889999999999999999999999999888888874 344445666553 6666666654443
No 232
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=29.20 E-value=2.4e+02 Score=23.32 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHH-
Q 036352 317 LVRHLWREFTRCHAFDASHYPLVLQRFLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVS- 395 (493)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~- 395 (493)
|.+.+..-|.+.++-.+ .......+|.++++.-...++..... + |..+.+.++.++++.+..
T Consensus 8 lE~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~---a-------------PN~y~V~Ls~~D~~~l~~~ 70 (116)
T PF12401_consen 8 LERAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL---A-------------PNVYTVELSPEDYERLSPW 70 (116)
T ss_dssp -SS--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B-------------------EEEEEEEHHHHHHH-S-
T ss_pred HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE---c-------------CeeEEEEECHHHHHHHhhh
Confidence 33333334444454332 34566677777777765554443221 2 266789999999998775
Q ss_pred --HHHHHHHHHHHHHHHHcCCCC
Q 036352 396 --ELIEETGAICQKCLEVANITR 416 (493)
Q Consensus 396 --~~i~~i~~~i~~~l~~~~~~~ 416 (493)
.+.+++.+.+.+.....+...
T Consensus 71 ~~~l~~el~~~l~~~a~~qgy~~ 93 (116)
T PF12401_consen 71 GDRLARELADYLAEHAREQGYTF 93 (116)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-B-
T ss_pred HHHHHHHHHHHHHHHHHHCCCee
Confidence 577778888888777776653
No 233
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=29.18 E-value=5.2e+02 Score=24.78 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHh
Q 036352 397 LIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFF 442 (493)
Q Consensus 397 ~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f 442 (493)
.++.+...+..+++. ..+..++++||.+...++++.+++..
T Consensus 205 ~~~~l~~~~~~a~~~-----~~~~~lv~~GGVaaN~~lr~~l~~~~ 245 (268)
T PF00814_consen 205 IADHLAKKAPRALEK-----PRAKSLVVSGGVAANKYLREGLRKLC 245 (268)
T ss_dssp HHHHHHHHHHHHHHH-----HTCSEEEEESGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----hcccccchHHHHHHHHHHHHHHHHHH
Confidence 344555555666555 35679999999999999999998654
No 234
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=28.98 E-value=3.5e+02 Score=25.24 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=30.2
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeccchHHHHHHhccc
Q 036352 223 ATKAVISVPACFNEAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLD 270 (493)
Q Consensus 223 ~~~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~ 270 (493)
++.++|+ .|++--...+|+ .++++++.+..-....|..++..
T Consensus 70 vdaiiIa---Cf~DPgl~~~Re---~~~~PviGi~eAsv~~A~~vgrr 111 (230)
T COG4126 70 VDAIIIA---CFSDPGLAAARE---RAAIPVIGICEASVLAALFVGRR 111 (230)
T ss_pred CcEEEEE---ecCChHHHHHHH---HhCCCceehhHHHHHHHHHhcce
Confidence 4667775 466655555554 46889999999999998888754
No 235
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=28.87 E-value=5.4e+02 Score=26.05 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 036352 311 LDFDLLLVRHLWREF 325 (493)
Q Consensus 311 ~~id~~l~~~l~~~~ 325 (493)
+.||+.|.+.|.+++
T Consensus 13 D~iD~~iv~Ll~~R~ 27 (374)
T PRK11199 13 DEVDKQLLELLAKRL 27 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999998888775
No 236
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=28.28 E-value=90 Score=26.48 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.4
Q ss_pred eEEEEcCCccEEEEEEeCCc
Q 036352 88 VLGIDLGTTYSRVAVMQGED 107 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~ 107 (493)
+||||+|-....+++.+.+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999886655
No 237
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=28.09 E-value=1.9e+02 Score=27.91 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=35.3
Q ss_pred CCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHH
Q 036352 418 DLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIH 466 (493)
Q Consensus 418 ~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~ 466 (493)
++|.++| |.+.-|++++.|++.+|.++.. +||..++|......
T Consensus 177 ~~DtlVL--GCTHyPll~~~i~~~~~~~v~l----ids~~~~a~~~~~~ 219 (269)
T COG0796 177 GPDTLVL--GCTHYPLLKPEIQQVLGEHVAL----IDSGAETARRLARL 219 (269)
T ss_pred CCCEEEE--eCcCcHHHHHHHHHHhCCCceE----eCCHHHHHHHHHHH
Confidence 4888888 9999999999999999987765 77777777666543
No 238
>PTZ00288 glucokinase 1; Provisional
Probab=28.03 E-value=58 Score=33.49 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.6
Q ss_pred CCCCceEEEEcCCccEEEEEEeC
Q 036352 83 KSQGNVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 83 ~~~~~ivGIDlGTt~s~va~~~~ 105 (493)
....+++|+|+|.|++++++++.
T Consensus 23 ~~~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 23 SSGPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred ccCCeEEEEEecCCceEEEEEec
Confidence 34567999999999999999854
No 239
>PRK14878 UGMP family protein; Provisional
Probab=27.85 E-value=2e+02 Score=28.49 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHH------HHHHHHhCCCCCCCCCCCChhHHHHhhH
Q 036352 394 VSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVR------EYMELFFGKSPLKSPRGVTPDEAVVIGA 463 (493)
Q Consensus 394 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~------~~l~~~fg~~~~~~~~~~~p~~aVA~GA 463 (493)
.+...+.+...++++|++++++..+||.|.++-|=...++++ +.|...+++++.. .+-.++=+..|
T Consensus 41 ~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p~~~----v~h~~~Ha~sa 112 (323)
T PRK14878 41 AQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKPLVP----VNHCIAHIEIG 112 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHhCCCccc----cchHHHHHHhh
Confidence 345667788899999999999999999999998766666555 4455556776554 56555555433
No 240
>PF13941 MutL: MutL protein
Probab=27.71 E-value=1.3e+02 Score=31.43 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=29.4
Q ss_pred EEEEEeC-CeeEEEEEEEeCCeEEEEEecCCC-CCchHHHHHHHHHH
Q 036352 276 FAVYSFG-GTFEFSILEISNGVIKVKAKRKSL-SHGGLDFDLLLVRH 320 (493)
Q Consensus 276 vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~-~~GG~~id~~l~~~ 320 (493)
+|++||| .+|-++++....+..++++..... .+.-.++..-+.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A 48 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNA 48 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHH
Confidence 7999999 999999999666666666544322 22113555555443
No 241
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=27.48 E-value=3.9e+02 Score=25.40 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCCceEEEEecccchhhhccccccceEEEEcHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 036352 343 FLGAAERAKVRLSSEPQVEVKLHNLLNIQVKKSLVQKDLEVTITRSEFESLVSELIEETG-----------AICQKCLEV 411 (493)
Q Consensus 343 L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~-----------~~i~~~l~~ 411 (493)
+.+.++.+++.-..+....+.+-.-++| |+|+.++++.+.+.+. +.+.+.|..
T Consensus 119 ~~~~i~~~e~~t~~~~~~~l~~a~nYGG----------------R~eI~~avr~ia~~v~~g~l~~~~I~e~~i~~~L~~ 182 (245)
T COG0020 119 VREAIEKAEEKTKNNTGLTLNIAVNYGG----------------RDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYT 182 (245)
T ss_pred HHHHHHHHHHhccCCCceEEEEeeCCCC----------------HHHHHHHHHHHHHHHHcCCCChHHcCHHHHHHhhcc
Confidence 3455555555544555566666555544 6788888887776663 345555555
Q ss_pred cCCCCCCCCEEEEecCCCCcHH
Q 036352 412 ANITRKDLDGILVVGGLGCVPS 433 (493)
Q Consensus 412 ~~~~~~~i~~VvLvGG~s~~p~ 433 (493)
.+++ ++|-++=+||--|+..
T Consensus 183 ~~~p--dpDLlIRTsGe~RlSn 202 (245)
T COG0020 183 SGLP--DPDLLIRTSGEQRLSN 202 (245)
T ss_pred cCCC--CCCEEEeCCCcccccc
Confidence 4433 7899999999777544
No 242
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=26.97 E-value=71 Score=29.34 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=16.5
Q ss_pred eEEEEcCCccEEEEEEeCCc
Q 036352 88 VLGIDLGTTYSRVAVMQGED 107 (493)
Q Consensus 88 ivGIDlGTt~s~va~~~~~~ 107 (493)
++-||+|+|+++++++++++
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 47899999999999998774
No 243
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=26.87 E-value=32 Score=35.97 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.9
Q ss_pred EEEEcCCccEEEEEEeC
Q 036352 89 LGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 89 vGIDlGTt~s~va~~~~ 105 (493)
+|||+|||+++++.++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998843
No 244
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=26.70 E-value=2.2e+02 Score=28.18 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHH------HHHHHHhCCCCCCCCCCCChhHHHHh
Q 036352 394 VSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVR------EYMELFFGKSPLKSPRGVTPDEAVVI 461 (493)
Q Consensus 394 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~------~~l~~~fg~~~~~~~~~~~p~~aVA~ 461 (493)
.+...+.+...++++|++++++..+||.|.++-|=...++++ +.|...+++++.. .+-.++=+.
T Consensus 42 ~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~p~~~----v~h~~aHa~ 111 (322)
T TIGR03722 42 AEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKLNKPLVG----VNHCVAHIE 111 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHhCCCeec----hhhHHHHHH
Confidence 345667788889999999999999999999998766666655 4444555666543 555555444
No 245
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.67 E-value=2e+02 Score=27.34 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=36.2
Q ss_pred CCCCCEEEEecCCCCcHH---HHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 416 RKDLDGILVVGGLGCVPS---VREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 416 ~~~i~~VvLvGG~s~~p~---v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
....+.|+|.|..+-+.. +++.++......+.. -|-+..+.|.|+.|.-.....
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~~~-----l~~esaaiG~a~IA~DI~~Gk 322 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKVAV-----LPPESAAIGLALIARDIASGK 322 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHHHhh-----cCchhhhhhhHHHHHHHHcCc
Confidence 456789999997777666 777776665433322 244558999998887655433
No 246
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=26.53 E-value=44 Score=35.12 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=15.2
Q ss_pred EEEEcCCccEEEEEEeC
Q 036352 89 LGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 89 vGIDlGTt~s~va~~~~ 105 (493)
+|||+||+++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999999853
No 247
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=26.18 E-value=2.7e+02 Score=27.09 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=48.4
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHH
Q 036352 384 TITRSEFESLVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAV 459 (493)
Q Consensus 384 ~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aV 459 (493)
.++.++|++..-|.+.+|.+.+++.+.+.++. .|--|+..-|+.- .-+.+... |.+++.+.=+.||.++.
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~--~vPmi~fakG~g~---~Le~l~~t-G~DVvgLDWTvdp~ear 288 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLA--PVPMILFAKGSGG---ALEELAQT-GYDVVGLDWTVDPAEAR 288 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCC--CCceEEEEcCcch---HHHHHHhc-CCcEEeecccccHHHHH
Confidence 67889999999999999999999999987554 4567777666552 23333322 55555433356776654
No 248
>PRK11024 colicin uptake protein TolR; Provisional
Probab=25.87 E-value=3.7e+02 Score=22.91 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=42.5
Q ss_pred CCCCceEEEeCCeE---eCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeccch
Q 036352 184 GFKGEAWVETEFGI---FSPAKIQAFILAKMRAIGEVYLKESATKAVISVPACFNEAQREAIKYAGDIAGLDIQGVVEDP 260 (493)
Q Consensus 184 ~~~g~~~~~~~~~~---~~~~~v~~~~L~~l~~~~~~~~~~~~~~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~li~Ep 260 (493)
+.+|...+..++.. ++.+++... +...... .+...+++..-..-.....-.+.++++.+|+..+.+..+|
T Consensus 68 ~~~g~~~~~~n~~~~~~v~~~~L~~~----l~~~~~~---~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~t~~ 140 (141)
T PRK11024 68 SGVGQYTVVVDKDRMEQLPEEQVVAE----AKSRFKA---NPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQP 140 (141)
T ss_pred eCCCcEEEeeCCccccccCHHHHHHH----HHHHHhh---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 34666665556532 455554332 2222111 1223566666666667777778889999999988887665
No 249
>PLN03171 chalcone synthase-like protein; Provisional
Probab=25.86 E-value=1.2e+02 Score=31.13 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCC-CCcHHHHHHHHHHhCCCC
Q 036352 396 ELIEETGAICQKCLEVANITRKDLDGILVVGGL-GCVPSVREYMELFFGKSP 446 (493)
Q Consensus 396 ~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~v~~~l~~~fg~~~ 446 (493)
...+=..+..+++|+++++++.+|+.|+++-.+ -.+|...-.+.+.+|.+.
T Consensus 107 ~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LGl~~ 158 (399)
T PLN03171 107 AVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLGLRP 158 (399)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhCCCc
Confidence 355556788999999999999999999982211 237999999999998654
No 250
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=25.65 E-value=59 Score=29.18 Aligned_cols=54 Identities=20% Similarity=0.403 Sum_probs=35.7
Q ss_pred CCCCCEEEEecCCCCc-----H---HHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcccCCCC
Q 036352 416 RKDLDGILVVGGLGCV-----P---SVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVNRRE 477 (493)
Q Consensus 416 ~~~i~~VvLvGG~s~~-----p---~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~ 477 (493)
..++|.|++.||.... + .+.+.|+...... -|..+|+.|.-+.+..+.|.....
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~--------~pilgiC~G~q~l~~~lGG~v~~~ 105 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAG--------KPVLGICLGHQLLARALGGKVGRN 105 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCC--------CCEEEECccHHHHHHHhCCEEecC
Confidence 4578999999997643 3 3444555544221 266788999988888877655433
No 251
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=25.27 E-value=2.8e+02 Score=26.92 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=36.7
Q ss_pred CCCCEEEEecCCCCcHH----HHHHHHHHh-----CCCCCCCCCCCChhHHHHhhHHHHHhhhcccC
Q 036352 417 KDLDGILVVGGLGCVPS----VREYMELFF-----GKSPLKSPRGVTPDEAVVIGAAIHGEKFRYVN 474 (493)
Q Consensus 417 ~~i~~VvLvGG~s~~p~----v~~~l~~~f-----g~~~~~~~~~~~p~~aVA~GAa~~a~~~~~~~ 474 (493)
...+.|+|.|-++++|- +++.|++.| +..+..+- ..--.--.|.|||+.|.-++|..
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le-~~~K~KeaA~GaAiiAnaiAGG~ 337 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLE-SRAKAKEAAEGAAIIANAIAGGL 337 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhh-hhhhhhhhccchhhhhhhhcchh
Confidence 35678999999999765 455666555 33443311 11222346899999998888754
No 252
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=24.78 E-value=59 Score=36.73 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=17.5
Q ss_pred ceEEEEcCCccEEEEEEeCC
Q 036352 87 NVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~ 106 (493)
+++|+|+||+.++-|+.+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 58999999999999998544
No 253
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=24.08 E-value=2.5e+02 Score=27.78 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHH------HHHhCCCCCCCCCCCChhHHHHhhHHH
Q 036352 394 VSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYM------ELFFGKSPLKSPRGVTPDEAVVIGAAI 465 (493)
Q Consensus 394 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l------~~~fg~~~~~~~~~~~p~~aVA~GAa~ 465 (493)
.+..-+.+...|+++|+.++++..+|+.|.++-|=...++++=-+ ...+++++. ..+-.++.|..+.+
T Consensus 46 ~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~~~p~~----~v~h~~aha~~a~~ 119 (314)
T TIGR03723 46 SRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPLI----GVNHLEGHLLAPFL 119 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEE----ecccHHHHHHhhhh
Confidence 455677888899999999999999999999999988888886544 333455554 46777776654443
No 254
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=23.84 E-value=6.1e+02 Score=26.34 Aligned_cols=29 Identities=10% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCeEEEEEeC-CeeEEEEEEEe-CCeEEEEE
Q 036352 273 DGLFAVYSFG-GTFEFSILEIS-NGVIKVKA 301 (493)
Q Consensus 273 ~~~vlVvDiG-gTtdvsv~~~~-~~~~~vl~ 301 (493)
.+.+|++|+| ..+-++++++. ++.+++..
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~ 104 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQ 104 (466)
T ss_pred CCCEEEEecCCceEEEEEEEeCCCCCccccc
Confidence 7789999999 99999999997 55555443
No 255
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=23.59 E-value=1e+02 Score=26.66 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.8
Q ss_pred ceEEEEcCCccEEEEEEeC
Q 036352 87 NVLGIDLGTTYSRVAVMQG 105 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~ 105 (493)
.+++||+|+-|...+..+.
T Consensus 2 ii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred eEEEEecCCCceeEEEEEc
Confidence 4899999999999998864
No 256
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=23.47 E-value=1.7e+02 Score=28.56 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=31.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeeeccchHHHHHHhcccC
Q 036352 224 TKAVISVPACFNEAQREAIKYAGDIAGLDIQGVVEDPVAAALAYGLDK 271 (493)
Q Consensus 224 ~~vvitVP~~~~~~~r~~l~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~ 271 (493)
.++|+|--- .+...++.|.+-.-..|++.-+++-+|+.+|+.|+.+.
T Consensus 251 ~H~VLswt~-~D~N~qk~LNrkllk~gl~r~~IVMDPTTcALGYGiey 297 (403)
T COG2069 251 DHVVLSWTQ-MDVNMQKTLNRKLLKRGLPRDRIVMDPTTCALGYGIEY 297 (403)
T ss_pred CceEEEeec-cChHHHHHHHHHHHHccCChhheeeccchhhhccceee
Confidence 567776432 22233333444444568999999999999999999874
No 257
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=23.18 E-value=94 Score=25.58 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCc--HHHHHHHHHHhCC
Q 036352 398 IEETGAICQKCLEVANITRKDLDGILVVGGLGCV--PSVREYMELFFGK 444 (493)
Q Consensus 398 i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~--p~v~~~l~~~fg~ 444 (493)
-..+.+.|+++|+++++++.+|+.|..-|-++.. +.=.+.+.+.|+.
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 3456778999999999999999999988877764 3334467777854
No 258
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=23.00 E-value=2.2e+02 Score=27.31 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCeEEEEEeC-CeeEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q 036352 273 DGLFAVYSFG-GTFEFSILEISNGVIKVKAKRKSLSHGGLDFDLLLVRHLWREF 325 (493)
Q Consensus 273 ~~~vlVvDiG-gTtdvsv~~~~~~~~~vl~~~~~~~~GG~~id~~l~~~l~~~~ 325 (493)
.+.++++|+| +++-+.+.+.....+.+.......--.|.-+|..-...+.+++
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~ 76 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDFIGAVTIVRRL 76 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeHHHHHHHHHHH
Confidence 6789999999 9988887766554555555555445556666655554444444
No 259
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.67 E-value=6.3e+02 Score=24.19 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHcCCCCCCCCEEEEecCCCCc
Q 036352 387 RSEFESLVSELIEETG---------------AICQKCLEVANITRKDLDGILVVGGLGCV 431 (493)
Q Consensus 387 r~~~e~~~~~~i~~i~---------------~~i~~~l~~~~~~~~~i~~VvLvGG~s~~ 431 (493)
|+|+..+++.++++.. +.+.+.|...+. .++|-++=+||-.|+
T Consensus 155 r~EI~~A~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~L~~~~~--P~pDLlIRTsGE~RL 212 (256)
T PRK14828 155 RQEIVDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLYTGGQ--PDPDLVIRTSGEQRL 212 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhccccCCHHHHHHHhccCCC--CCCCEEEeCCCCCcc
Confidence 6777777776665432 345555543333 478999999997764
No 260
>PLN02920 pantothenate kinase 1
Probab=22.63 E-value=2.4e+02 Score=28.85 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhh
Q 036352 416 RKDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEK 469 (493)
Q Consensus 416 ~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~ 469 (493)
..++..|.++||++. .+.+.+++.++.++.. .|-.+|+..|+-..-..
T Consensus 94 ~~~~~~i~~TGGGA~--k~~~~~~~~~~i~~~k----~DEm~~li~Gl~fLl~~ 141 (398)
T PLN02920 94 THDKNFIKATGGGAY--KFADLFKEKLGISLDK----EDEMDCLVTGANFLLKA 141 (398)
T ss_pred CCCceEEEEECCcHH--HHHHHHHhhhCCCcee----ecHHHHHHHHHHHHHhh
Confidence 356789999999984 6788888888877665 78889999999877543
No 261
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=22.59 E-value=1.5e+02 Score=26.33 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=24.9
Q ss_pred ceEEEEcCCcc-EEEEEEeCCceEEEEccCCC
Q 036352 87 NVLGIDLGTTY-SRVAVMQGEDPVVIEEVEGG 117 (493)
Q Consensus 87 ~ivGIDlGTt~-s~va~~~~~~~~vi~~~~g~ 117 (493)
++.|||+|-.. +++|++.++..+++..+...
T Consensus 2 my~GIDla~k~~tavavl~~~~~~~i~~~s~~ 33 (178)
T COG2410 2 MYAGIDLAVKRSTAVAVLIEGRIEIISAWSSR 33 (178)
T ss_pred cccccccccCCCceEEEEECCEEEEEEccccc
Confidence 48899998776 58888899998998777553
No 262
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=22.55 E-value=2.8e+02 Score=25.79 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCEEEEecCCCC--cHHHHHHHHHHhCCC
Q 036352 401 TGAICQKCLEVANITRKDLDGILVVGGLGC--VPSVREYMELFFGKS 445 (493)
Q Consensus 401 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~--~p~v~~~l~~~fg~~ 445 (493)
....++++|+++++++.+|+.|++...... .|.....+...+|.+
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~ 57 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS 57 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCC
Confidence 356778889999999899999998665444 688888999999874
No 263
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.92 E-value=7e+02 Score=23.79 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHcCCCCCCCCEEEEecCCCCcH
Q 036352 387 RSEFESLVSELIEETG-----------AICQKCLEVANITRKDLDGILVVGGLGCVP 432 (493)
Q Consensus 387 r~~~e~~~~~~i~~i~-----------~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p 432 (493)
|+|+..+++.++..+. +.+.+.|...+. .++|-++=+||-.|+.
T Consensus 153 r~EI~~A~~~~~~~v~~~~~~~~~i~~~~i~~~L~~~~~--pdpDLlIRTsGe~RLS 207 (250)
T PRK14840 153 KDELVRAFKKLHQDLANKKISSDDISEELISSYLDTSGL--PDPDLLIRTGGEMRVS 207 (250)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhCCHHHHHHHhccCCC--CCCCEEEeCCCCcccc
Confidence 6777777766654432 344555543333 4789999999987753
No 264
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=21.77 E-value=72 Score=31.99 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=38.5
Q ss_pred CCCCEEEEecCCCCcHHHHHHHHHHhCCCCCCCCCCCChhHHHHhhHHHHHhhhcc
Q 036352 417 KDLDGILVVGGLGCVPSVREYMELFFGKSPLKSPRGVTPDEAVVIGAAIHGEKFRY 472 (493)
Q Consensus 417 ~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~~~~~~~~p~~aVA~GAa~~a~~~~~ 472 (493)
.....|..+||++ -...+.+++.++.++.+ .|-.+|+..|+-..-.....
T Consensus 82 ~~~~~I~aTGGGA--~Ky~~~~~~~Lgv~v~K----~DEm~clI~Gl~fLl~~i~~ 131 (341)
T PF03630_consen 82 QKITKICATGGGA--FKYADLFKEKLGVEVQK----EDEMECLIKGLNFLLKNIPD 131 (341)
T ss_dssp GCSSEEEEESTTH--HHHHCHHHCTSTSEEEE------HHHHHHHHHHHHHHTTB-
T ss_pred ccceEEEEeCCcH--HHHHHHHHHhcCCCeeE----ehHHHHHHhhHHHHHhcCCc
Confidence 4567999999999 45788888888887777 78888999999988774443
No 265
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.20 E-value=1.6e+02 Score=23.94 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCC--CEEEEecCCCCcHHHHHHHHHHhC
Q 036352 394 VSELIEETGAICQKCLEVANITRKDL--DGILVVGGLGCVPSVREYMELFFG 443 (493)
Q Consensus 394 ~~~~i~~i~~~i~~~l~~~~~~~~~i--~~VvLvGG~s~~p~v~~~l~~~fg 443 (493)
+......+.+.|+..|+.++.+..+| -.|+++.-....+.+.+...++|+
T Consensus 31 ~~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 31 FEAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 34556667777888888888887777 345667655788899999999997
No 266
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.81 E-value=2.3e+02 Score=27.72 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEEecCCCCcHHHHHHHHHHhCCCCC
Q 036352 393 LVSELIEETGAICQKCLEVANITRKDLDGILVVGGLGCVPSVREYMELFFGKSPL 447 (493)
Q Consensus 393 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~fg~~~~ 447 (493)
++...++.+.+.++++|++++++..+|+.+++-.++ +.+.+.+.+.+|.+..
T Consensus 219 ~~~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~~~~ 270 (325)
T PRK12879 219 VFKWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGIPME 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCCCHH
Confidence 334445667788999999999999999999987765 4445677888776543
No 267
>PRK03011 butyrate kinase; Provisional
Probab=20.54 E-value=1e+02 Score=31.12 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=20.9
Q ss_pred ceEEEEcCCccEEEEEEeCCceEEE
Q 036352 87 NVLGIDLGTTYSRVAVMQGEDPVVI 111 (493)
Q Consensus 87 ~ivGIDlGTt~s~va~~~~~~~~vi 111 (493)
.|+.|.-|+|.|++|++++.++..-
T Consensus 3 ~il~inpgststk~a~~~~~~~~~~ 27 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDEKPIFE 27 (358)
T ss_pred EEEEEcCCCchheEEEEcCCceeee
Confidence 4899999999999999987765433
No 268
>PRK06840 hypothetical protein; Validated
Probab=20.24 E-value=2e+02 Score=28.55 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEecCCC---CcHHHHHHHHHHhCCCC
Q 036352 399 EETGAICQKCLEVANITRKDLDGILVVGGLG---CVPSVREYMELFFGKSP 446 (493)
Q Consensus 399 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s---~~p~v~~~l~~~fg~~~ 446 (493)
+=..+.++++|+++++++.+|+.++.++-.. ..|.....|...+|.+.
T Consensus 55 ~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lGl~~ 105 (339)
T PRK06840 55 DMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGAKN 105 (339)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhCCCC
Confidence 3345778889999999999999998765322 36666677888887643
No 269
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=20.20 E-value=90 Score=33.01 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.3
Q ss_pred CceEEEEcCCccEEEEEEeCC
Q 036352 86 GNVLGIDLGTTYSRVAVMQGE 106 (493)
Q Consensus 86 ~~ivGIDlGTt~s~va~~~~~ 106 (493)
.++|||||||..-++++++-.
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~ 23 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQ 23 (544)
T ss_pred cEEEEEeecCCceeEEEEEcC
Confidence 469999999999999999544
Done!