Query 036354
Match_columns 88
No_of_seqs 116 out of 256
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 11:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 7.3E-31 1.6E-35 183.9 8.2 88 1-88 22-120 (154)
2 PF04535 DUF588: Domain of unk 99.9 5.1E-27 1.1E-31 162.0 8.4 88 1-88 29-127 (149)
3 PF01284 MARVEL: Membrane-asso 77.8 16 0.00034 23.5 7.1 55 14-68 35-98 (144)
4 PF14147 Spore_YhaL: Sporulati 57.8 15 0.00034 21.8 2.8 24 18-41 1-24 (52)
5 PF10993 DUF2818: Protein of u 27.3 1.9E+02 0.0041 19.1 5.0 34 47-84 36-70 (95)
6 PF04906 Tweety: Tweety; Inte 24.1 1.6E+02 0.0034 23.6 4.5 10 73-82 79-88 (406)
7 PF07172 GRP: Glycine rich pro 22.9 1.2E+02 0.0025 19.7 3.0 17 54-70 12-28 (95)
8 PF06376 DUF1070: Protein of u 17.2 2E+02 0.0043 15.6 2.6 15 51-65 13-27 (34)
9 PF13962 PGG: Domain of unknow 16.8 1.8E+02 0.0039 18.6 2.9 23 19-41 50-72 (113)
10 PRK13245 hetR heterocyst diffe 16.0 1.1E+02 0.0024 23.7 1.9 13 51-63 15-27 (299)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=99.97 E-value=7.3e-31 Score=183.86 Aligned_cols=88 Identities=40% Similarity=0.677 Sum_probs=82.1
Q ss_pred CcceeeEE--EEEEEEeccCCchHHHHHHHHHHHHHHHHHHhc------cCC---chhhhhhhHHHHHHHHHHHHHHHHH
Q 036354 1 HEIATFFA--VSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFL------PLD---DLAIGCCFDMLFTMLLTSSISAALT 69 (88)
Q Consensus 1 ~~t~~~~~--i~~~a~ysd~~af~~fV~anai~~~Ysll~l~~------r~~---~~~~l~~~D~v~~~ll~sa~sAA~~ 69 (88)
|||.++++ +++++||+|+|+|+|||++|+|+++|+++|+++ |++ .+|++|++||+|+|+++||++||++
T Consensus 22 ~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~~f~~D~v~~~Ll~sa~sAA~a 101 (154)
T TIGR01569 22 RETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIALFFLDLVMLALLSSGTSAAAA 101 (154)
T ss_pred cceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 68999988 999999999999999999999999999999987 222 3579999999999999999999999
Q ss_pred HHHHHhcCcccCCccCcCC
Q 036354 70 IAQVGKKENSSTGWLSMCH 88 (88)
Q Consensus 70 i~yl~~~Gn~~~~W~~iC~ 88 (88)
++|++|+||+|++|+|+|+
T Consensus 102 v~~l~~~G~~~~~W~~iC~ 120 (154)
T TIGR01569 102 VAYVGKLGNKEAGWLKICG 120 (154)
T ss_pred HHHHHHccccccchhhHHH
Confidence 9999999999999999996
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.94 E-value=5.1e-27 Score=161.95 Aligned_cols=88 Identities=36% Similarity=0.588 Sum_probs=81.6
Q ss_pred CcceeeEEEEEEEEeccCCchHHHHHHHHHHHHHHHHHHhc------c--C---CchhhhhhhHHHHHHHHHHHHHHHHH
Q 036354 1 HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFL------P--L---DDLAIGCCFDMLFTMLLTSSISAALT 69 (88)
Q Consensus 1 ~~t~~~~~i~~~a~ysd~~af~~fV~anai~~~Ysll~l~~------r--~---~~~~~l~~~D~v~~~ll~sa~sAA~~ 69 (88)
|||.+++.+++++||+|+|+|+|+|++|+|+++|+++|++. + . ...|++|++||+++|+++||++||++
T Consensus 29 ~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~ 108 (149)
T PF04535_consen 29 KQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLRSKLLAWFLFILDQVLAYLLFSAASAAAA 108 (149)
T ss_pred CCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999999999887 2 1 12469999999999999999999999
Q ss_pred HHHHHhcCcccCCccCcCC
Q 036354 70 IAQVGKKENSSTGWLSMCH 88 (88)
Q Consensus 70 i~yl~~~Gn~~~~W~~iC~ 88 (88)
++|++++||+|++|+++|+
T Consensus 109 ~~~~~~~g~~~~~W~~vC~ 127 (149)
T PF04535_consen 109 VAYLGKKGNSHVQWSKVCS 127 (149)
T ss_pred HHHHHHhccccccchhhcc
Confidence 9999999999999999996
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=77.77 E-value=16 Score=23.51 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=39.2
Q ss_pred EeccCCchHHHHHHHHHHHHHHHHHHhc------c-CC--chhhhhhhHHHHHHHHHHHHHHHH
Q 036354 14 KYSAMPAFKFFVIANAIVSIYGFLVLFL------P-LD--DLAIGCCFDMLFTMLLTSSISAAL 68 (88)
Q Consensus 14 ~ysd~~af~~fV~anai~~~Ysll~l~~------r-~~--~~~~l~~~D~v~~~ll~sa~sAA~ 68 (88)
..+..+...|.+.+.++...+++..++. + ++ .++..++.|.++..+-+.+..+-+
T Consensus 35 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~il~l~a~~~~a 98 (144)
T PF01284_consen 35 YGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIPWPLVEFIFDAVFAILWLAAFIALA 98 (144)
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888887776655 1 12 234788999999999888655443
No 4
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=57.83 E-value=15 Score=21.76 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=19.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhc
Q 036354 18 MPAFKFFVIANAIVSIYGFLVLFL 41 (88)
Q Consensus 18 ~~af~~fV~anai~~~Ysll~l~~ 41 (88)
+|=.+|||++-.+.++|.++-...
T Consensus 1 ~PwWvY~vi~gI~~S~ym~v~t~~ 24 (52)
T PF14147_consen 1 IPWWVYFVIAGIIFSGYMAVKTAK 24 (52)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Confidence 466799999999999998886443
No 5
>PF10993 DUF2818: Protein of unknown function (DUF2818); InterPro: IPR016768 There is currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain transmembrane segments.
Probab=27.31 E-value=1.9e+02 Score=19.10 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCcccCC-cc
Q 036354 47 AIGCCFDMLFTMLLTSSISAALTIAQVGKKENSSTG-WL 84 (88)
Q Consensus 47 ~~l~~~D~v~~~ll~sa~sAA~~i~yl~~~Gn~~~~-W~ 84 (88)
.-.-++..+..|++..+.+-..| ++.||.+.| |.
T Consensus 36 ~~~rl~El~~~y~~vg~la~~lE----~~~G~v~~QgWe 70 (95)
T PF10993_consen 36 FWWRLLELLVLYFLVGLLAFLLE----ARAGQVHPQGWE 70 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhcCCcCCCCcc
Confidence 45557889999999988777776 788887765 64
No 6
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=24.06 E-value=1.6e+02 Score=23.56 Aligned_cols=10 Identities=50% Similarity=0.431 Sum_probs=7.6
Q ss_pred HHhcCcccCC
Q 036354 73 VGKKENSSTG 82 (88)
Q Consensus 73 l~~~Gn~~~~ 82 (88)
+|-+||++++
T Consensus 79 vG~yGN~e~~ 88 (406)
T PF04906_consen 79 VGFYGNSETN 88 (406)
T ss_pred cccccchhhh
Confidence 4889998764
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.88 E-value=1.2e+02 Score=19.66 Aligned_cols=17 Identities=41% Similarity=0.419 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036354 54 MLFTMLLTSSISAALTI 70 (88)
Q Consensus 54 ~v~~~ll~sa~sAA~~i 70 (88)
.+.+.||+|+..+|.+.
T Consensus 12 ~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 12 LLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHhhhhhHHh
Confidence 34444555555555444
No 8
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=17.23 E-value=2e+02 Score=15.58 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHH
Q 036354 51 CFDMLFTMLLTSSIS 65 (88)
Q Consensus 51 ~~D~v~~~ll~sa~s 65 (88)
..||...|+++-++-
T Consensus 13 aiDqgiay~Lm~~Al 27 (34)
T PF06376_consen 13 AIDQGIAYMLMLVAL 27 (34)
T ss_pred hhhHHHHHHHHHHHH
Confidence 469999999986543
No 9
>PF13962 PGG: Domain of unknown function
Probab=16.85 E-value=1.8e+02 Score=18.57 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc
Q 036354 19 PAFKFFVIANAIVSIYGFLVLFL 41 (88)
Q Consensus 19 ~af~~fV~anai~~~Ysll~l~~ 41 (88)
..|..|.+.|.++...|+...++
T Consensus 50 ~~f~~F~~~nt~af~~S~~~i~~ 72 (113)
T PF13962_consen 50 SAFKAFLISNTIAFFSSLAAIFL 72 (113)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999887654
No 10
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=16.03 E-value=1.1e+02 Score=23.68 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHH
Q 036354 51 CFDMLFTMLLTSS 63 (88)
Q Consensus 51 ~~D~v~~~ll~sa 63 (88)
..||+|+||-+||
T Consensus 15 amDqiml~LAFsA 27 (299)
T PRK13245 15 AMDQIMLYLAFSA 27 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 5899999999986
Done!