Query 036354
Match_columns 88
No_of_seqs 116 out of 256
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 20:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1emz_A Envelope glycoprotein E 15.8 34 0.0012 16.8 0.1 15 69-87 9-23 (26)
2 3qoe_A Heterocyst differentiat 10.8 60 0.0021 24.1 0.2 13 51-63 18-30 (302)
3 1m93_A Serine proteinase inhib 9.7 89 0.0031 17.0 0.7 15 65-79 24-38 (55)
4 1jb0_X Photosystem I subunit P 8.6 2.7E+02 0.0091 14.4 2.2 15 22-36 17-31 (35)
5 2k9p_A Pheromone alpha factor 6.6 4.7E+02 0.016 15.5 4.4 18 44-61 45-62 (80)
6 3h0g_C DNA-directed RNA polyme 5.4 2E+02 0.0069 21.2 0.9 11 77-87 165-175 (297)
7 1r1f_A Palicourein; cyclotide, 5.1 2.7E+02 0.0093 14.5 1.1 10 77-87 4-13 (37)
8 2wsw_A BCCT family betaine/car 4.8 4.1E+02 0.014 21.0 2.4 27 51-77 416-442 (509)
9 3j01_B Preprotein translocase 4.8 6.3E+02 0.022 15.8 3.0 23 62-84 39-61 (116)
10 2l02_A Uncharacterized protein 4.5 3.8E+02 0.013 16.2 1.6 14 65-78 38-51 (82)
No 1
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=15.83 E-value=34 Score=16.78 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=9.5
Q ss_pred HHHHHHhcCcccCCccCcC
Q 036354 69 TIAQVGKKENSSTGWLSMC 87 (88)
Q Consensus 69 ~i~yl~~~Gn~~~~W~~iC 87 (88)
+++|.+..|| |-|+|
T Consensus 9 glayfsm~gn----WaKVl 23 (26)
T 1emz_A 9 GIAYFSMVGN----WAKXX 23 (26)
T ss_dssp HHHHHHHHHH----HHC--
T ss_pred HHHHHHHhhH----Hhhhc
Confidence 4778877776 77765
No 2
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=10.79 E-value=60 Score=24.07 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHH
Q 036354 51 CFDMLFTMLLTSS 63 (88)
Q Consensus 51 ~~D~v~~~ll~sa 63 (88)
.+||+|+||-+||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999999986
No 3
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=9.72 E-value=89 Score=16.97 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcCcc
Q 036354 65 SAALTIAQVGKKENS 79 (88)
Q Consensus 65 sAA~~i~yl~~~Gn~ 79 (88)
+.|.++.|+|-+|++
T Consensus 24 ~~aLaml~~GA~g~T 38 (55)
T 1m93_A 24 SSVLTILYYGANGST 38 (55)
T ss_dssp HHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhhccchH
Confidence 445556666666654
No 4
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=8.60 E-value=2.7e+02 Score=14.38 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 036354 22 KFFVIANAIVSIYGF 36 (88)
Q Consensus 22 ~~fV~anai~~~Ysl 36 (88)
..|+..|-+|++|=+
T Consensus 17 lllLaINflVAayYF 31 (35)
T 1jb0_X 17 VLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367888988888853
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=6.57 E-value=4.7e+02 Score=15.50 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=12.1
Q ss_pred CchhhhhhhHHHHHHHHH
Q 036354 44 DDLAIGCCFDMLFTMLLT 61 (88)
Q Consensus 44 ~~~~~l~~~D~v~~~ll~ 61 (88)
|+|-.+|++.|+...+..
T Consensus 45 krrspiF~lN~~~L~l~i 62 (80)
T 2k9p_A 45 SRKTPIFIINQVSLFLII 62 (80)
T ss_dssp CSCCCHHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHHHHHH
Confidence 444456888888776655
No 6
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=5.38 E-value=2e+02 Score=21.18 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=6.9
Q ss_pred CcccCCccCcC
Q 036354 77 ENSSTGWLSMC 87 (88)
Q Consensus 77 Gn~~~~W~~iC 87 (88)
|-.|+-|.|+|
T Consensus 165 G~~HAKwsPv~ 175 (297)
T 3h0g_C 165 AKEHAKWSPTS 175 (297)
T ss_dssp GGGCTTSCCBC
T ss_pred eccccccCcce
Confidence 44567777665
No 7
>1r1f_A Palicourein; cyclotide, plant protein; NMR {Palicourea condensata} SCOP: g.3.3.4
Probab=5.11 E-value=2.7e+02 Score=14.54 Aligned_cols=10 Identities=10% Similarity=0.481 Sum_probs=6.1
Q ss_pred CcccCCccCcC
Q 036354 77 ENSSTGWLSMC 87 (88)
Q Consensus 77 Gn~~~~W~~iC 87 (88)
|++. -|.|+|
T Consensus 4 GEsC-v~iP~C 13 (37)
T 1r1f_A 4 GETC-RVIPVC 13 (37)
T ss_dssp SSCC-SSSCSC
T ss_pred ccce-EEcccc
Confidence 4544 377777
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=4.81 E-value=4.1e+02 Score=21.03 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036354 51 CFDMLFTMLLTSSISAALTIAQVGKKE 77 (88)
Q Consensus 51 ~~D~v~~~ll~sa~sAA~~i~yl~~~G 77 (88)
.+=.++....+|+-|++..++.+..+|
T Consensus 416 ~iil~~~FfvTSaDS~s~vi~~~ss~g 442 (509)
T 2wsw_A 416 FFILCFIATVTLINACSYTLAMSTCRS 442 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHcCC
Confidence 344567889999999999999999888
No 9
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=4.77 E-value=6.3e+02 Score=15.80 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhcCcccCCcc
Q 036354 62 SSISAALTIAQVGKKENSSTGWL 84 (88)
Q Consensus 62 sa~sAA~~i~yl~~~Gn~~~~W~ 84 (88)
.+..+|..+++.-++|++-.++.
T Consensus 39 ~~~~~a~~v~~~t~~g~~~~~F~ 61 (116)
T 3j01_B 39 ILIAAAGGVALLTTKGKATVAFA 61 (116)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCS
T ss_pred HHHHHHHHHHHHccccchHHHHH
Confidence 34456677888889998765554
No 10
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=4.54 E-value=3.8e+02 Score=16.20 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcCc
Q 036354 65 SAALTIAQVGKKEN 78 (88)
Q Consensus 65 sAA~~i~yl~~~Gn 78 (88)
-.+.+|++|+|.|.
T Consensus 38 el~lAIGWLaREdK 51 (82)
T 2l02_A 38 STALAVGWLARENK 51 (82)
T ss_dssp HHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhccCc
Confidence 35678999998875
Done!