Query 036354
Match_columns 88
No_of_seqs 116 out of 256
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 20:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036354.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036354hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b5id1 g.18.1.1 (D:1-64) Inte 18.1 20 0.0015 19.7 0.9 13 76-88 47-60 (64)
2 d3beca2 e.3.1.1 (A:4-262) Peni 7.9 96 0.007 20.0 2.1 25 48-72 93-117 (259)
3 d2owna2 d.38.1.8 (A:150-258) P 7.0 74 0.0054 17.3 1.0 15 7-21 12-26 (109)
4 d1ppje2 f.23.12.1 (E:1-69) Iro 7.0 2E+02 0.015 15.4 3.1 15 54-68 33-47 (69)
5 d1xuba2 d.21.1.2 (A:129-278) P 6.5 1.3E+02 0.0093 17.6 2.0 17 63-79 84-100 (150)
6 d1s5ua_ d.38.1.1 (A:) Hypothet 6.4 77 0.0056 17.4 0.9 17 5-21 1-17 (129)
7 d2iy5a1 a.2.7.2 (A:15-84) Phen 6.1 85 0.0062 16.4 0.9 12 67-78 6-17 (70)
8 d1xp4a2 e.3.1.1 (A:25-293) D,D 6.1 1.3E+02 0.0098 19.4 2.1 23 50-72 83-105 (269)
9 d2tpta2 c.27.1.1 (A:71-335) Th 5.9 33 0.0024 22.6 -1.3 16 66-81 32-47 (265)
10 d1uoua2 c.27.1.1 (A:101-373) T 5.3 35 0.0026 22.6 -1.5 20 62-81 29-48 (273)
No 1
>d2b5id1 g.18.1.1 (D:1-64) Interleukin-2 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.06 E-value=20 Score=19.74 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=7.1
Q ss_pred cCc-ccCCccCcCC
Q 036354 76 KEN-SSTGWLSMCH 88 (88)
Q Consensus 76 ~Gn-~~~~W~~iC~ 88 (88)
.|| +|..|..-|+
T Consensus 47 ~GnsSHssWen~Cq 60 (64)
T d2b5id1 47 TGNSSHSSWDNQCQ 60 (64)
T ss_dssp C-----CCBSCCCC
T ss_pred cCCCCCchhhccee
Confidence 466 5788998885
No 2
>d3beca2 e.3.1.1 (A:4-262) Penicillin-binding protein 5, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.93 E-value=96 Score=20.05 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 036354 48 IGCCFDMLFTMLLTSSISAALTIAQ 72 (88)
Q Consensus 48 ~l~~~D~v~~~ll~sa~sAA~~i~y 72 (88)
-+-+-|.+-+.++-|++-||.+++.
T Consensus 93 ~~tv~dLl~a~ll~S~NdAA~aLA~ 117 (259)
T d3beca2 93 QVPVSQLIRGINLQSGNDACVAMAD 117 (259)
T ss_dssp EEEHHHHHHHHHHHCCHHHHHHHHH
T ss_pred EEEhHHhhhhhhhhhcChHHHHHHH
Confidence 3446699999999999999999996
No 3
>d2owna2 d.38.1.8 (A:150-258) Putative oleoyl-ACP thioesterase LP0708 {Lactobacillus plantarum [TaxId: 1590]}
Probab=7.00 E-value=74 Score=17.26 Aligned_cols=15 Identities=0% Similarity=0.215 Sum_probs=12.5
Q ss_pred EEEEEEEEeccCCch
Q 036354 7 FAVSFEAKYSAMPAF 21 (88)
Q Consensus 7 ~~i~~~a~ysd~~af 21 (88)
++.+++++|+|.+.+
T Consensus 12 ~~~~~~Vr~~D~D~~ 26 (109)
T d2owna2 12 ITKPYHVRFFDIDPN 26 (109)
T ss_dssp EEEEEECCGGGBCTT
T ss_pred EEEEEEecHHHcCCC
Confidence 567889999999875
No 4
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.98 E-value=2e+02 Score=15.40 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q 036354 54 MLFTMLLTSSISAAL 68 (88)
Q Consensus 54 ~v~~~ll~sa~sAA~ 68 (88)
..+.|++.++++++.
T Consensus 33 k~fsYl~~g~~~v~~ 47 (69)
T d1ppje2 33 KGFSYLVTATTTVGV 47 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ceehhhhhhhHHHHH
Confidence 567787777666554
No 5
>d1xuba2 d.21.1.2 (A:129-278) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]}
Probab=6.55 E-value=1.3e+02 Score=17.58 Aligned_cols=17 Identities=6% Similarity=0.048 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCcc
Q 036354 63 SISAALTIAQVGKKENS 79 (88)
Q Consensus 63 a~sAA~~i~yl~~~Gn~ 79 (88)
++++++-.+|+.++|..
T Consensus 84 GSa~~aLa~yl~~~~~~ 100 (150)
T d1xuba2 84 GSAAGPLAIHLARHGQI 100 (150)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHHhCCC
Confidence 44555557899998863
No 6
>d1s5ua_ d.38.1.1 (A:) Hypothetical protein YbgC {Escherichia coli [TaxId: 562]}
Probab=6.43 E-value=77 Score=17.45 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=13.0
Q ss_pred eeEEEEEEEEeccCCch
Q 036354 5 TFFAVSFEAKYSAMPAF 21 (88)
Q Consensus 5 ~~~~i~~~a~ysd~~af 21 (88)
++|..+.+++|+|.++.
T Consensus 1 t~f~~~~~Vr~~d~D~~ 17 (129)
T d1s5ua_ 1 TLFRWPVRVYYEDTDAG 17 (129)
T ss_dssp CCEEEEEECCGGGBCTT
T ss_pred CceEEEEEeCHHHcCCC
Confidence 46777888888888775
No 7
>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]}
Probab=6.13 E-value=85 Score=16.41 Aligned_cols=12 Identities=42% Similarity=0.401 Sum_probs=9.1
Q ss_pred HHHHHHHHhcCc
Q 036354 67 ALTIAQVGKKEN 78 (88)
Q Consensus 67 A~~i~yl~~~Gn 78 (88)
..-+-|+|++|.
T Consensus 6 ~~r~~~lGKkG~ 17 (70)
T d2iy5a1 6 ALKARYLGKKGL 17 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhCchhH
Confidence 345789999985
No 8
>d1xp4a2 e.3.1.1 (A:25-293) D,D-carboxypeptidase DacA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=6.11 E-value=1.3e+02 Score=19.39 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 036354 50 CCFDMLFTMLLTSSISAALTIAQ 72 (88)
Q Consensus 50 ~~~D~v~~~ll~sa~sAA~~i~y 72 (88)
-+-|.+-..++-|++-||.+++.
T Consensus 83 tv~dLl~~~l~~S~NdAA~aLA~ 105 (269)
T d1xp4a2 83 TVEELLEATLVSSANSAAIALAE 105 (269)
T ss_dssp EHHHHHHHHHHHCCHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688889999999999999986
No 9
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=5.94 E-value=33 Score=22.63 Aligned_cols=16 Identities=6% Similarity=-0.151 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCcccC
Q 036354 66 AALTIAQVGKKENSST 81 (88)
Q Consensus 66 AA~~i~yl~~~Gn~~~ 81 (88)
+|++-..++|+||+.+
T Consensus 32 ~Aa~Gv~VaKHGNRsv 47 (265)
T d2tpta2 32 VAACGGYIPMISGRGL 47 (265)
T ss_dssp HHHTTCBEEEEECCCC
T ss_pred HHhCCCceecccCCCC
Confidence 4444457889999864
No 10
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.26 E-value=35 Score=22.60 Aligned_cols=20 Identities=10% Similarity=-0.125 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhcCcccC
Q 036354 62 SSISAALTIAQVGKKENSST 81 (88)
Q Consensus 62 sa~sAA~~i~yl~~~Gn~~~ 81 (88)
++.-+|++-.-++|+||+.+
T Consensus 29 ~a~VaAa~Gv~VaKHGNRsi 48 (273)
T d1uoua2 29 LAPALAACGCKVPMISGRGL 48 (273)
T ss_dssp HHHHHHTTTCBEEEECCCCB
T ss_pred HHHHHHhCCCccccccCCcc
Confidence 33344444557899999865
Done!