BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036355
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 132 NENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEI 191
N +S+ Y +R+ N + H I F QR NET+I+ + N + NA
Sbjct: 100 NPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARD 159
Query: 192 LKLRYRQKAMLVDLFMTGDVGF 213
L+ + + +++++T V +
Sbjct: 160 LRAEKSKGTIEMEVYITARVSY 181
>sp|A1TFQ5|HOA3_MYCVP 4-hydroxy-2-oxovalerate aldolase 3 OS=Mycobacterium vanbaalenii
(strain DSM 7251 / PYR-1) GN=Mvan_5234 PE=3 SV=1
Length = 350
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ S G CR T
Sbjct: 61 GGSSFNYGFSKTPEQELIKLAAETAKESKIAFLMLPGVGTK-EDIKEAQSNGGSICRIAT 119
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGILRSS 95
C +S+ F + LG VG L S
Sbjct: 120 HCTEADVSIQHFG-LARELGLETVGFLMMS 148
>sp|B2HI25|HOA2_MYCMM 4-hydroxy-2-oxovalerate aldolase 2 OS=Mycobacterium marinum (strain
ATCC BAA-535 / M) GN=MMAR_5021 PE=3 SV=1
Length = 347
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + Q + ++AF +PG T EDI++ G CR T
Sbjct: 54 GGSSFNYGFSKTPEQELIKLAAQTAKEAKIAFLMLPGVGT-KEDIKEAQDNGGSICRIAT 112
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGIL 92
C +S+ F + LG VG L
Sbjct: 113 HCTEADVSIQHFG-LARELGLETVGFL 138
>sp|A4T7U4|HOA_MYCGI 4-hydroxy-2-oxovalerate aldolase OS=Mycobacterium gilvum (strain
PYR-GCK) GN=Mflv_1522 PE=3 SV=1
Length = 352
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ + G CR T
Sbjct: 61 GGSSFNYGFSKTPEQELIKLAAETAKESKIAFLMLPGVGTK-EDIKEAQNNGGSICRIAT 119
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGILRSS 95
C +S+ F + LG VG L S
Sbjct: 120 HCTEADVSIQHFG-LARELGLETVGFLMMS 148
>sp|Q1B2X1|HOA1_MYCSS 4-hydroxy-2-oxovalerate aldolase 1 OS=Mycobacterium sp. (strain
MCS) GN=Mmcs_4659 PE=3 SV=1
Length = 353
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ + G CR T
Sbjct: 61 GGSSFNYGFSKTPEQELIKLAAETAKEAKIAFLMLPGVGT-KEDIKEAQNNGGSICRIAT 119
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGILRSS 95
C +S+ F + LG VG L S
Sbjct: 120 HCTEADVSIQHFG-LARELGLETVGFLMMS 148
>sp|A1UM80|HOA1_MYCSK 4-hydroxy-2-oxovalerate aldolase 1 OS=Mycobacterium sp. (strain
KMS) GN=Mkms_4747 PE=3 SV=1
Length = 353
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ + G CR T
Sbjct: 61 GGSSFNYGFSKTPEQELIKLAAETAKEAKIAFLMLPGVGT-KEDIKEAQNNGGSICRIAT 119
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGILRSS 95
C +S+ F + LG VG L S
Sbjct: 120 HCTEADVSIQHFG-LARELGLETVGFLMMS 148
>sp|Q743Q8|HOA_MYCPA 4-hydroxy-2-oxovalerate aldolase OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=MAP_0533 PE=3 SV=1
Length = 352
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ + G CR T
Sbjct: 60 GGSSFNYGFSKTPEQELIKLAAETAKDAKIAFLMLPGVGTK-EDIKEAQNNGGSICRIAT 118
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGILRSS 95
C +S+ F + LG VG L S
Sbjct: 119 HCTEADVSIQHFG-LARELGLETVGFLMMS 147
>sp|A3Q6M9|HOA2_MYCSJ 4-hydroxy-2-oxovalerate aldolase 2 OS=Mycobacterium sp. (strain
JLS) GN=Mjls_5042 PE=3 SV=1
Length = 353
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ + G CR T
Sbjct: 61 GGSSFNYGFSKTPEQELIKLAAETAKEAKIAFLMLPGVGT-KEDIKEAQNNGGSICRIAT 119
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGILRSS 95
C +S+ F + LG VG L S
Sbjct: 120 HCTEADVSIQHFG-LARELGLETVGFLMMS 148
>sp|A3Q4B9|HOA1_MYCSJ 4-hydroxy-2-oxovalerate aldolase 1 OS=Mycobacterium sp. (strain
JLS) GN=Mjls_4224 PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ + G CR T
Sbjct: 60 GGSSFNYGFSKTPEQELIKLAAETAKEAKIAFLMLPGVGT-KEDIKEAQNNGGSICRIAT 118
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGILRSS 95
C +S+ F + LG VG L S
Sbjct: 119 HCTEADVSIQHFG-LARELGLETVGFLMMS 147
>sp|A0QAG9|HOA_MYCA1 4-hydroxy-2-oxovalerate aldolase OS=Mycobacterium avium (strain
104) GN=MAV_0627 PE=3 SV=1
Length = 352
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ + G CR T
Sbjct: 60 GGSSFNYGFSKTPEQELIKLAAETAKEAKIAFLMLPGVGT-KEDIKEAQNNGGSICRIAT 118
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGILRSS 95
C +S+ F + LG VG L S
Sbjct: 119 HCTEADVSIQHFG-LARELGLETVGFLMMS 147
>sp|A0R4S6|HOA2_MYCS2 4-hydroxy-2-oxovalerate aldolase 2 OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=bphI-2 PE=3 SV=1
Length = 349
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 6 GASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFT 65
G SS + P L + + + ++AF +PG T EDI++ + G CR T
Sbjct: 59 GGSSFNYGFSKTPEQELIKIAAETAKESKIAFLMLPGVGT-KEDIKEAQNNGGSICRIAT 117
Query: 66 CCAWICISVTAFLIIIFVLGFVAVGIL 92
C +S+ F + LG VG L
Sbjct: 118 HCTEADVSIQHFG-LARELGLETVGFL 143
>sp|Q2JKL5|AMPA_SYNJB Probable cytosol aminopeptidase OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=pepA PE=3 SV=1
Length = 510
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 136 KMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLR 195
++ LH+ + EN+ GH PG + N+ I+VN T R+ A+A + +
Sbjct: 316 QVELHF----IVAATENMISGHAIHPGDILTASNQKTIEVNNTDAEGRLTLADALVFAEK 371
Query: 196 YRQKAMLVDLFMTGDVGFSFGGLNIKGL--PFEVNCQKVNEA 235
A+L +TG + G I GL P E Q++ +A
Sbjct: 372 LGVDAILDLATLTGACVIALGE-EIAGLFTPDETLAQELQQA 412
>sp|A3KMY4|CTL4_BOVIN Choline transporter-like protein 4 OS=Bos taurus GN=SLC44A4 PE=2
SV=1
Length = 707
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 12/44 (27%)
Query: 52 DPNSKG---HRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGIL 92
DP+ +G +RSC CC L +F+LG++AVGIL
Sbjct: 19 DPSFRGPIRNRSCTDIICCV---------LFFLFILGYIAVGIL 53
>sp|P20676|NUP1_YEAST Nucleoporin NUP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP1 PE=1 SV=1
Length = 1076
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Query: 125 SVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRI 184
++K E + DK S+ + + +N P + +G K V T+
Sbjct: 315 TLKKNIEPKKDKESIVLPTVGFDFIKDNETPSKKTSPKATSSAGAVFKSSVEMGKTDKST 374
Query: 185 DDANAEILKLRYRQKA---MLVDLFMTGDVGFSFGG----LNIKGLPFEVN-CQKVNEAY 236
A A L + QKA VD + F+FGG + PF+ + +E +
Sbjct: 375 KTAEAPTLSFNFSQKANKTKAVDNTVPSTTLFNFGGKSDTVTSASQPFKFGKTSEKSENH 434
Query: 237 IKSDDPPKCYTKLLSF 252
+SD PPK + SF
Sbjct: 435 TESDAPPKSTAPIFSF 450
>sp|P69811|PTFAH_ECOLI Multiphosphoryl transfer protein OS=Escherichia coli (strain K12)
GN=fruB PE=1 SV=1
Length = 376
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 84 LGFVAVGILRSSLPHINVLKVHS---SNISISESSRQKFLTMEISVKLEFENENDKMSLH 140
+ +VA+GI SS H+ +L+ + S+ S++E + E+ L E +++++ L
Sbjct: 92 VAYVAIGIAASSDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLD 151
Query: 141 YEKLRVEIKAENV 153
E L ++I A ++
Sbjct: 152 NEMLTLDIVASDL 164
>sp|P69812|PTFAH_ECO57 Multiphosphoryl transfer protein OS=Escherichia coli O157:H7
GN=fruB PE=3 SV=1
Length = 376
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 84 LGFVAVGILRSSLPHINVLKVHS---SNISISESSRQKFLTMEISVKLEFENENDKMSLH 140
+ +VA+GI SS H+ +L+ + S+ S++E + E+ L E +++++ L
Sbjct: 92 VAYVAIGIAASSDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLD 151
Query: 141 YEKLRVEIKAENV 153
E L ++I A ++
Sbjct: 152 NEMLTLDIVASDL 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,028,691
Number of Sequences: 539616
Number of extensions: 3436449
Number of successful extensions: 12626
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 12613
Number of HSP's gapped (non-prelim): 43
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)