Query 036355
Match_columns 255
No_of_seqs 156 out of 818
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 11:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 4.7E-37 1E-41 266.9 26.3 192 52-249 25-217 (219)
2 PF03168 LEA_2: Late embryogen 99.5 1.7E-13 3.6E-18 103.8 9.0 98 127-230 1-100 (101)
3 smart00769 WHy Water Stress an 98.5 2E-06 4.3E-11 65.7 11.5 81 119-205 12-94 (100)
4 PF12751 Vac7: Vacuolar segreg 98.4 3.8E-06 8.3E-11 77.8 11.6 92 52-156 289-381 (387)
5 PF07092 DUF1356: Protein of u 98.1 0.00013 2.9E-09 63.9 15.5 85 92-179 96-181 (238)
6 COG5608 LEA14-like dessication 97.4 0.022 4.9E-07 46.7 16.7 116 95-226 31-148 (161)
7 PLN03160 uncharacterized prote 95.9 0.1 2.3E-06 45.5 10.5 111 52-172 28-147 (219)
8 PF14155 DUF4307: Domain of un 90.2 3.3 7.2E-05 32.3 9.0 82 85-182 19-103 (112)
9 KOG3950 Gamma/delta sarcoglyca 87.1 0.93 2E-05 40.1 4.3 24 118-141 104-127 (292)
10 TIGR03602 streptolysinS bacter 84.0 0.14 3.1E-06 33.8 -1.6 10 60-69 25-34 (56)
11 PF06072 Herpes_US9: Alphaherp 83.4 0.59 1.3E-05 32.2 1.1 14 60-73 29-42 (60)
12 TIGR02588 conserved hypothetic 81.2 5.6 0.00012 31.6 6.0 57 69-136 5-63 (122)
13 PF09624 DUF2393: Protein of u 79.0 18 0.00039 29.1 8.6 67 83-161 32-100 (149)
14 PRK13150 cytochrome c-type bio 78.0 23 0.00051 29.4 9.0 65 124-195 78-146 (159)
15 COG1580 FliL Flagellar basal b 77.3 9.3 0.0002 31.7 6.5 26 67-92 17-42 (159)
16 PF09307 MHC2-interact: CLIP, 70.7 1.4 3E-05 34.6 0.0 32 62-94 27-58 (114)
17 PRK05529 cell division protein 67.7 11 0.00023 33.6 5.1 47 96-143 58-128 (255)
18 PF12273 RCR: Chitin synthesis 66.7 3.2 7E-05 33.0 1.4 10 69-78 2-11 (130)
19 PF10907 DUF2749: Protein of u 66.1 5.9 0.00013 27.8 2.4 17 79-95 12-28 (66)
20 PRK07021 fliL flagellar basal 65.3 17 0.00037 30.0 5.5 29 126-156 67-95 (162)
21 COG2332 CcmE Cytochrome c-type 62.8 42 0.00091 27.6 7.1 36 125-160 73-109 (153)
22 PRK13159 cytochrome c-type bio 60.5 82 0.0018 26.1 8.6 54 134-195 82-139 (155)
23 PF11906 DUF3426: Protein of u 60.1 57 0.0012 26.0 7.7 75 100-178 49-135 (149)
24 PF09911 DUF2140: Uncharacteri 59.6 13 0.00028 31.6 3.9 29 69-97 3-31 (187)
25 PF12505 DUF3712: Protein of u 58.7 85 0.0018 24.4 8.4 67 154-226 2-70 (125)
26 PF03100 CcmE: CcmE; InterPro 54.1 38 0.00082 26.9 5.5 7 146-152 84-90 (131)
27 PF00424 REV: REV protein (ant 53.3 2 4.4E-05 32.3 -1.8 20 14-33 19-38 (91)
28 PRK12785 fliL flagellar basal 52.6 42 0.0009 27.9 5.7 29 126-155 74-102 (166)
29 PF05478 Prominin: Prominin; 52.2 15 0.00033 38.1 3.7 23 63-85 137-159 (806)
30 PHA02819 hypothetical protein; 51.6 23 0.00049 25.3 3.3 18 67-84 44-61 (71)
31 PF05473 Herpes_UL45: UL45 pro 50.7 32 0.00069 29.5 4.9 6 53-58 37-42 (200)
32 PF04806 EspF: EspF protein re 49.1 6.6 0.00014 25.3 0.3 20 13-32 9-29 (47)
33 cd07912 Tweety_N N-terminal do 48.8 14 0.00031 35.4 2.7 6 57-62 75-80 (418)
34 PF05545 FixQ: Cbb3-type cytoc 47.6 12 0.00026 24.5 1.4 19 77-96 16-34 (49)
35 PRK10893 lipopolysaccharide ex 47.3 1.2E+02 0.0027 25.7 7.9 21 93-113 37-57 (192)
36 PRK06531 yajC preprotein trans 47.1 9.5 0.00021 29.9 1.0 12 87-98 15-26 (113)
37 COG4698 Uncharacterized protei 45.1 21 0.00045 30.3 2.8 30 85-114 27-59 (197)
38 PRK13183 psbN photosystem II r 44.6 28 0.0006 22.8 2.7 24 71-94 9-32 (46)
39 PF03929 PepSY_TM: PepSY-assoc 44.4 33 0.00072 19.8 2.8 21 69-89 7-27 (27)
40 CHL00020 psbN photosystem II p 44.3 21 0.00046 23.0 2.1 24 71-94 6-29 (43)
41 PF05478 Prominin: Prominin; 43.2 16 0.00036 37.8 2.3 19 70-88 141-159 (806)
42 PHA03054 IMV membrane protein; 43.0 31 0.00068 24.7 3.0 18 67-84 46-63 (72)
43 PF12505 DUF3712: Protein of u 42.3 67 0.0015 25.0 5.2 26 121-147 99-124 (125)
44 PRK01844 hypothetical protein; 42.2 26 0.00057 25.2 2.5 20 69-88 4-23 (72)
45 PF04790 Sarcoglycan_1: Sarcog 41.9 2.6E+02 0.0057 25.1 10.1 19 118-136 82-100 (264)
46 PF09604 Potass_KdpF: F subuni 41.5 14 0.0003 21.0 0.8 17 80-96 8-24 (25)
47 PRK07718 fliL flagellar basal 41.1 42 0.00092 27.0 4.0 15 140-154 63-77 (142)
48 PF02468 PsbN: Photosystem II 39.8 25 0.00055 22.7 1.9 23 72-94 7-29 (43)
49 PF04478 Mid2: Mid2 like cell 39.8 29 0.00062 28.7 2.7 19 81-99 64-82 (154)
50 PF15050 SCIMP: SCIMP protein 38.9 16 0.00034 29.0 1.1 25 68-93 8-32 (133)
51 PF07787 DUF1625: Protein of u 38.5 35 0.00075 30.1 3.3 12 83-94 237-248 (248)
52 PHA02975 hypothetical protein; 38.5 44 0.00095 23.8 3.1 12 68-79 43-54 (69)
53 PHA02844 putative transmembran 38.1 30 0.00064 25.0 2.3 24 67-90 46-69 (75)
54 PF14283 DUF4366: Domain of un 38.0 24 0.00052 30.8 2.2 16 84-99 175-190 (218)
55 PHA02650 hypothetical protein; 37.7 29 0.00062 25.4 2.2 23 67-89 47-69 (81)
56 PF12273 RCR: Chitin synthesis 37.6 32 0.0007 27.1 2.7 11 69-79 5-15 (130)
57 PRK13254 cytochrome c-type bio 36.9 1.6E+02 0.0036 24.0 6.8 13 183-195 127-139 (148)
58 PF15145 DUF4577: Domain of un 36.8 32 0.00068 27.0 2.4 22 73-94 67-88 (128)
59 PTZ00382 Variant-specific surf 36.7 14 0.0003 28.0 0.4 14 80-93 79-92 (96)
60 COG5325 t-SNARE complex subuni 36.6 34 0.00073 31.0 2.9 13 61-73 257-269 (283)
61 PF04415 DUF515: Protein of un 36.3 31 0.00067 33.0 2.8 21 74-94 38-58 (416)
62 PF06024 DUF912: Nucleopolyhed 36.0 48 0.001 25.2 3.3 8 86-93 80-88 (101)
63 KOG0810 SNARE protein Syntaxin 35.6 13 0.00027 34.1 0.1 8 53-60 263-270 (297)
64 PF13396 PLDc_N: Phospholipase 35.2 46 0.00099 21.1 2.7 15 81-95 32-46 (46)
65 PRK00523 hypothetical protein; 34.9 47 0.001 23.9 2.9 16 72-87 8-23 (72)
66 PF03302 VSP: Giardia variant- 34.7 17 0.00037 34.5 0.8 22 71-92 371-392 (397)
67 PF12734 CYSTM: Cysteine-rich 34.6 44 0.00096 20.7 2.4 9 19-27 2-10 (37)
68 PF10177 DUF2371: Uncharacteri 34.5 48 0.0011 27.0 3.3 30 62-95 35-64 (141)
69 PF11669 WBP-1: WW domain-bind 34.3 44 0.00096 25.5 2.9 14 69-82 22-35 (102)
70 PF06129 Chordopox_G3: Chordop 34.2 53 0.0011 25.6 3.3 31 124-154 51-87 (109)
71 COG5353 Uncharacterized protei 34.1 24 0.00053 29.0 1.5 26 69-94 8-33 (161)
72 cd01324 cbb3_Oxidase_CcoQ Cyto 33.9 28 0.00061 22.9 1.5 15 81-96 21-35 (48)
73 PRK05696 fliL flagellar basal 33.4 53 0.0011 27.2 3.5 26 126-154 76-101 (170)
74 PRK13165 cytochrome c-type bio 33.3 2.8E+02 0.0062 23.0 8.9 14 181-194 132-145 (160)
75 PF08693 SKG6: Transmembrane a 32.7 45 0.00096 21.2 2.2 12 83-94 27-38 (40)
76 PHA02692 hypothetical protein; 32.5 54 0.0012 23.4 2.8 9 67-75 43-51 (70)
77 PF00927 Transglut_C: Transglu 32.1 1.4E+02 0.003 22.3 5.4 59 119-178 12-75 (107)
78 PF01102 Glycophorin_A: Glycop 32.0 22 0.00049 28.2 1.0 24 80-103 77-101 (122)
79 PF04505 Dispanin: Interferon- 31.8 64 0.0014 23.5 3.3 6 65-70 27-32 (82)
80 KOG0810 SNARE protein Syntaxin 31.5 20 0.00044 32.8 0.7 14 62-75 268-281 (297)
81 TIGR02115 potass_kdpF K+-trans 31.4 14 0.0003 21.3 -0.3 16 81-96 8-23 (26)
82 PHA03049 IMV membrane protein; 28.9 25 0.00055 24.8 0.7 18 77-94 8-25 (68)
83 PRK14759 potassium-transportin 28.6 32 0.0007 20.3 1.0 16 81-96 13-28 (29)
84 PRK05886 yajC preprotein trans 28.5 23 0.0005 27.5 0.5 12 85-96 15-26 (109)
85 COG3763 Uncharacterized protei 28.5 68 0.0015 23.0 2.8 18 69-86 4-21 (71)
86 PF02009 Rifin_STEVOR: Rifin/s 28.5 32 0.00068 31.6 1.4 16 78-93 265-280 (299)
87 PF01299 Lamp: Lysosome-associ 27.4 56 0.0012 29.7 2.9 19 78-96 281-299 (306)
88 PRK08455 fliL flagellar basal 27.1 27 0.00058 29.5 0.7 15 140-154 103-117 (182)
89 PF11337 DUF3139: Protein of u 27.1 56 0.0012 23.8 2.3 12 83-94 19-30 (85)
90 PF08999 SP_C-Propep: Surfacta 27.0 99 0.0021 22.8 3.5 6 83-88 50-55 (93)
91 PF15012 DUF4519: Domain of un 26.3 65 0.0014 22.0 2.3 14 82-95 43-56 (56)
92 COG5294 Uncharacterized protei 26.3 1.3E+02 0.0029 23.4 4.3 15 122-136 52-66 (113)
93 PF10969 DUF2771: Protein of u 26.3 69 0.0015 26.5 3.0 23 81-103 16-41 (161)
94 PF07184 CTV_P33: Citrus trist 26.0 35 0.00076 29.5 1.2 24 64-87 278-301 (303)
95 PF10694 DUF2500: Protein of u 26.0 3E+02 0.0065 20.9 7.0 46 94-140 30-81 (110)
96 KOG4331 Polytopic membrane pro 25.9 31 0.00066 35.8 0.9 34 62-95 128-178 (865)
97 PF08113 CoxIIa: Cytochrome c 25.0 46 0.00099 20.3 1.2 8 82-89 16-23 (34)
98 PF01102 Glycophorin_A: Glycop 25.0 36 0.00079 27.0 1.0 18 76-93 70-87 (122)
99 PF11395 DUF2873: Protein of u 24.7 55 0.0012 20.5 1.5 7 86-92 26-32 (43)
100 PF14927 Neurensin: Neurensin 24.5 2.3E+02 0.0051 23.0 5.6 18 79-98 55-73 (140)
101 PF06092 DUF943: Enterobacteri 24.5 51 0.0011 27.4 1.8 9 86-94 20-28 (157)
102 PF12321 DUF3634: Protein of u 24.5 38 0.00082 26.3 1.0 16 86-101 11-28 (108)
103 PTZ00116 signal peptidase; Pro 24.4 2.9E+02 0.0063 23.6 6.4 55 94-152 36-93 (185)
104 PF09865 DUF2092: Predicted pe 24.2 4.7E+02 0.01 22.6 9.1 38 118-156 35-74 (214)
105 PF07509 DUF1523: Protein of u 24.0 4.3E+02 0.0094 22.3 7.3 21 93-113 25-45 (175)
106 COG3354 FlaG Putative archaeal 23.6 1.2E+02 0.0025 25.0 3.7 31 122-153 68-98 (154)
107 PF05961 Chordopox_A13L: Chord 22.7 49 0.0011 23.5 1.2 18 78-95 9-26 (68)
108 TIGR01655 yxeA_fam conserved h 22.6 3.6E+02 0.0079 20.7 6.3 13 124-136 55-67 (114)
109 PRK11875 psbT photosystem II r 22.2 63 0.0014 19.3 1.4 17 82-98 12-28 (31)
110 CHL00031 psbT photosystem II p 22.0 74 0.0016 19.3 1.7 17 82-98 12-28 (33)
111 PRK14758 hypothetical protein; 22.0 1E+02 0.0022 17.7 2.2 14 77-90 13-26 (27)
112 PF14055 NVEALA: NVEALA protei 21.9 41 0.00088 23.4 0.7 26 84-109 15-40 (65)
113 PF06919 Phage_T4_Gp30_7: Phag 21.9 1.9E+02 0.0042 22.4 4.4 38 132-170 40-78 (121)
114 PF04573 SPC22: Signal peptida 21.9 3.7E+02 0.0081 22.5 6.6 30 119-152 65-95 (175)
115 PF07790 DUF1628: Protein of u 21.9 3E+02 0.0064 19.4 7.7 24 128-152 56-79 (80)
116 PF07705 CARDB: CARDB; InterP 21.7 3E+02 0.0065 19.4 6.3 53 121-178 18-70 (101)
117 PLN03132 NADH dehydrogenase (u 21.7 52 0.0011 32.1 1.5 22 7-28 4-26 (461)
118 COG1862 YajC Preprotein transl 21.5 45 0.00098 25.4 0.9 13 84-96 19-31 (97)
119 PF11322 DUF3124: Protein of u 21.3 3.9E+02 0.0084 21.3 6.1 54 119-175 20-75 (125)
120 PF12606 RELT: Tumour necrosis 21.2 52 0.0011 22.0 1.0 20 77-96 9-28 (50)
121 PF05297 Herpes_LMP1: Herpesvi 21.1 32 0.00069 31.5 0.0 12 82-93 175-186 (381)
122 COG4736 CcoQ Cbb3-type cytochr 21.1 44 0.00096 23.2 0.7 10 87-96 25-34 (60)
123 PF07423 DUF1510: Protein of u 20.7 54 0.0012 28.7 1.3 7 190-196 153-159 (217)
124 KOG4433 Tweety transmembrane/c 20.6 92 0.002 30.5 2.9 12 56-67 78-89 (526)
125 PF13706 PepSY_TM_3: PepSY-ass 20.5 1E+02 0.0022 18.8 2.2 20 69-88 10-29 (37)
126 cd07912 Tweety_N N-terminal do 20.4 1.3E+02 0.0028 29.0 3.9 6 60-65 64-69 (418)
127 PHA03283 envelope glycoprotein 20.4 1.4E+02 0.0031 29.4 4.2 16 79-94 410-425 (542)
128 PHA03093 EEV glycoprotein; Pro 20.1 99 0.0021 26.3 2.7 24 128-152 94-117 (185)
129 PF14654 Epiglycanin_C: Mucin, 20.0 1.4E+02 0.003 22.9 3.2 13 76-88 27-39 (106)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=266.92 Aligned_cols=192 Identities=13% Similarity=0.198 Sum_probs=156.2
Q ss_pred CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhheeeeeeeCCCEEEEeeEEEeeeeecCCCC-ceeEeEEEEEEEEE
Q 036355 52 DPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSR-QKFLTMEISVKLEF 130 (255)
Q Consensus 52 ~~~~~~~~~~~c~~cc~~~~~~i~~liil~~~a~li~~lv~rPk~P~f~V~s~~v~~f~~s~~~~-~~~l~~~l~~tl~~ 130 (255)
.++.+++++.+|.+||+|++++++++ ++++++++|++||||+|+|+|+++++++|++++++. ...+|+++++++++
T Consensus 25 ~~~~~~~~r~~~~~c~~~~~a~~l~l---~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v 101 (219)
T PLN03160 25 TNHLKKTRRRNCIKCCGCITATLLIL---ATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSV 101 (219)
T ss_pred CcchhccccccceEEHHHHHHHHHHH---HHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEE
Confidence 34554333333445666666554333 456667789999999999999999999999975321 35789999999999
Q ss_pred ecCCCeeeEEEeCeEEEEEECCeEEeeccCCCccccCCCeEEEEEEEEEeeeecChHHHHHHHHHhcCceEEEEEEEEEE
Q 036355 131 ENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGD 210 (255)
Q Consensus 131 ~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp~F~Q~~~ntt~v~~~l~~~~~~v~~~~~~~L~~d~~~g~v~l~v~v~~~ 210 (255)
+|||. ++|+|++++++++|+|+.+|.+.+|+|+|++++++.+.+++......+.+ ...|.+|+.+|.++|+++++.+
T Consensus 102 ~NPN~-~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~ 178 (219)
T PLN03160 102 KNPNV-ASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIG 178 (219)
T ss_pred ECCCc-eeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEE
Confidence 99996 89999999999999999999999999999999999999998766554433 2579999999999999999999
Q ss_pred EEEEEeEEEEeeeeEEEEeeeeeeccccCCCCCCCeEEE
Q 036355 211 VGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKL 249 (255)
Q Consensus 211 vr~kvg~~~s~~~~v~V~C~~v~~~~~~~~~~~~C~v~~ 249 (255)
+++++|.+.++++.++++|++.+...-...+.++|..++
T Consensus 179 gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~~ 217 (219)
T PLN03160 179 GKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHV 217 (219)
T ss_pred EEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEecccc
Confidence 999999999999999999997776544555678998774
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.48 E-value=1.7e-13 Score=103.77 Aligned_cols=98 Identities=17% Similarity=0.324 Sum_probs=75.2
Q ss_pred EEEEecCCCeeeEEEeCeEEEEEECCeEEe-eccCCCccccCCCeEEEEEEEEEeeeecChHHHHHHHHHhcCceEEEEE
Q 036355 127 KLEFENENDKMSLHYEKLRVEIKAENVRIG-HTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDL 205 (255)
Q Consensus 127 tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg-~~~vp~F~Q~~~ntt~v~~~l~~~~~~v~~~~~~~L~~d~~~g~v~l~v 205 (255)
+|+++|||. ++++|++++++++|+|..+| ....++|+|++++++.+.+.+..+...+ .+.+.++. +|...+++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence 689999997 99999999999999999999 8899999999999999999888775433 56677777 66777777
Q ss_pred EEEEEEEEEE-eEEEEeeeeEEEEee
Q 036355 206 FMTGDVGFSF-GGLNIKGLPFEVNCQ 230 (255)
Q Consensus 206 ~v~~~vr~kv-g~~~s~~~~v~V~C~ 230 (255)
.+++++++++ +.....+..+.++|+
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 7788888884 433333455555554
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.52 E-value=2e-06 Score=65.73 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=66.4
Q ss_pred eEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCC-CccccCCCeEEEEEEEEEeeeecChHHHHHHHHHhc
Q 036355 119 FLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIP-GFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYR 197 (255)
Q Consensus 119 ~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp-~F~Q~~~ntt~v~~~l~~~~~~v~~~~~~~L~~d~~ 197 (255)
.++.++.+++.++||| .+.+.|++++..++|+|..+|++..+ ++..++++++.+.++++.+ . .....+..++.
T Consensus 12 ~~~~~~~l~l~v~NPN-~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~----~~~~~~~~~l~ 85 (100)
T smart00769 12 GLEIEIVLKVKVQNPN-PFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-L----FLAEALIWHIA 85 (100)
T ss_pred ceEEEEEEEEEEECCC-CCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-h----hHhHHHHHhhc
Confidence 5789999999999999 59999999999999999999999996 7999999999999988873 2 22455556666
Q ss_pred Cce-EEEEE
Q 036355 198 QKA-MLVDL 205 (255)
Q Consensus 198 ~g~-v~l~v 205 (255)
+|. +++++
T Consensus 86 ~~~~~~y~l 94 (100)
T smart00769 86 NGEEIPYRL 94 (100)
T ss_pred cCCCccEEE
Confidence 663 44444
No 4
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=98.38 E-value=3.8e-06 Score=77.82 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=58.0
Q ss_pred CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhheeeeeeeCCCEEEEeeEEEeeee-ecCCCCceeEeEEEEEEEEE
Q 036355 52 DPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNIS-ISESSRQKFLTMEISVKLEF 130 (255)
Q Consensus 52 ~~~~~~~~~~~c~~cc~~~~~~i~~liil~~~a~li~~lv~rPk~P~f~V~s~~v~~f~-~s~~~~~~~l~~~l~~tl~~ 130 (255)
+++.++++++|.++++|.+ +.|++|+++.+++++++.. -+| ++++.|..+. +-.+ .--.-|+++|.+
T Consensus 289 e~~~~r~r~~~~r~~~c~~-~~i~~lL~ig~~~gFv~At-tKp------L~~v~v~~I~NVlaS----~qELmfdl~V~A 356 (387)
T PF12751_consen 289 EYQQYRQRSWFSRFASCIY-LSILLLLVIGFAIGFVFAT-TKP------LTDVQVVSIQNVLAS----EQELMFDLTVEA 356 (387)
T ss_pred chhhhccccHHhhhhHHHH-HHHHHHHHHHHHHHhhhhc-Ccc------cccceEEEeeeeeec----cceEEEeeEEEE
Confidence 3344445566655655544 3344455566777776543 355 4455444332 1111 236779999999
Q ss_pred ecCCCeeeEEEeCeEEEEEECCeEEe
Q 036355 131 ENENDKMSLHYEKLRVEIKAENVRIG 156 (255)
Q Consensus 131 ~NPN~k~~i~Y~~~~v~v~Y~g~~Lg 156 (255)
.||| .+.|.-++++++|+-+..-+|
T Consensus 357 ~NPn-~~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 357 FNPN-WFTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred ECCC-eEEEEeccceeeeEecCCccC
Confidence 9999 699999999999988765554
No 5
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.15 E-value=0.00013 Score=63.90 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=63.7
Q ss_pred eeeCCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCCCc-cccCCCe
Q 036355 92 LRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGF-SQRSGNE 170 (255)
Q Consensus 92 ~rPk~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp~F-~Q~~~nt 170 (255)
+-|+.-.++-.++......++... ..+..++.-++.+.||| ...+.-.++++++.|....+|.+..... ..+|++.
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~~--~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~ 172 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPDK--STVQLNITNTLNISNPN-FYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSS 172 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCCC--CEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCC
Confidence 458766666555544444444432 47899999999999999 8999999999999999999998877644 5577777
Q ss_pred EEEEEEEEE
Q 036355 171 TKIDVNTTT 179 (255)
Q Consensus 171 t~v~~~l~~ 179 (255)
..+..++..
T Consensus 173 ~q~~~tV~t 181 (238)
T PF07092_consen 173 KQVNYTVKT 181 (238)
T ss_pred ceEEEEeeE
Confidence 766666554
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.45 E-value=0.022 Score=46.66 Aligned_cols=116 Identities=18% Similarity=0.320 Sum_probs=81.1
Q ss_pred CCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccC-CCccccCCCeEEE
Q 036355 95 SLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAI-PGFSQRSGNETKI 173 (255)
Q Consensus 95 k~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~v-p~F~Q~~~ntt~v 173 (255)
++|.+.--.+...... . ....+-.++.++|||. +.+--..++..++-+|..+|.+.. -++..++++..++
T Consensus 31 ~~p~ve~~ka~wGkvt--~------s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tv 101 (161)
T COG5608 31 KKPGVESMKAKWGKVT--N------SETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETV 101 (161)
T ss_pred CCCCceEEEEEEEEEe--c------cceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEE
Confidence 6677665555554433 2 2567999999999994 899999999999999999998876 5699999999999
Q ss_pred EEEEEEeeeecChHHHHHHHHHhcCce-EEEEEEEEEEEEEEEeEEEEeeeeEE
Q 036355 174 DVNTTTTNTRIDDANAEILKLRYRQKA-MLVDLFMTGDVGFSFGGLNIKGLPFE 226 (255)
Q Consensus 174 ~~~l~~~~~~v~~~~~~~L~~d~~~g~-v~l~v~v~~~vr~kvg~~~s~~~~v~ 226 (255)
.+.+..+...+ -+.+...+.+|. -++++++++. +++|... ..+.++
T Consensus 102 dv~l~~d~~~~----ke~w~~hi~ngErs~Ir~~i~~~--v~vg~~d-~eVpi~ 148 (161)
T COG5608 102 DVPLRLDNSKI----KEWWVTHIENGERSTIRVRIKGV--VKVGGMD-YEVPIK 148 (161)
T ss_pred EEEEEEehHHH----HHHHHHHhhccCcccEEEEEEEE--EEEccEE-EEEEEE
Confidence 99998775433 344555666664 2444444443 3455444 234443
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.87 E-value=0.1 Score=45.47 Aligned_cols=111 Identities=12% Similarity=0.134 Sum_probs=58.3
Q ss_pred CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhheeeeeeeC--CCEEEEeeEEEee-------eeecCCCCceeEeE
Q 036355 52 DPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSS--LPHINVLKVHSSN-------ISISESSRQKFLTM 122 (255)
Q Consensus 52 ~~~~~~~~~~~c~~cc~~~~~~i~~liil~~~a~li~~lv~rPk--~P~f~V~s~~v~~-------f~~s~~~~~~~l~~ 122 (255)
.+.+++|++++|+.|+|-++++++++++++. .++++ -=+|+ .-.++++++.++. +|++-..+=..=|.
T Consensus 28 ~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~--~~vfr-Pk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NP 104 (219)
T PLN03160 28 LKKTRRRNCIKCCGCITATLLILATTILVLV--FTVFR-VKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNP 104 (219)
T ss_pred hhccccccceEEHHHHHHHHHHHHHHHHhee--eEEEE-ccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECC
Confidence 3445566666555566655555566655332 24544 35663 4566666666532 22110000001134
Q ss_pred EEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCCCccccCCCeEE
Q 036355 123 EISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETK 172 (255)
Q Consensus 123 ~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp~F~Q~~~ntt~ 172 (255)
|. +.+... |..+.++|+...+.- ..+..+.++++.+..-+.+.
T Consensus 105 N~-~~~~Y~--~~~~~v~Y~g~~vG~----a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 105 NV-ASFKYS--NTTTTIYYGGTVVGE----ARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred Cc-eeEEEc--CeEEEEEECCEEEEE----EEcCCcccCCCCeEEEEEEE
Confidence 44 445544 345899998865543 34556677777777666664
No 8
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=90.19 E-value=3.3 Score=32.25 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=39.0
Q ss_pred Hhheeeeee-eCCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEe--eccCC
Q 036355 85 GFVAVGILR-SSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIG--HTAIP 161 (255)
Q Consensus 85 ~li~~lv~r-Pk~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg--~~~vp 161 (255)
+++.|+.|. ...|.++- ...+|++.+++ +.++++.++-. |.. ..+.- --...|++..+| ...+|
T Consensus 19 ~~~~w~~~~~~~~~~v~~---~~~gf~vv~d~-----~v~v~f~Vtr~-~~~--~a~C~--VrA~~~d~aeVGrreV~vp 85 (112)
T PF14155_consen 19 AVVAWFGYSQFGSPPVSA---EVIGFEVVDDS-----TVEVTFDVTRD-PGR--PAVCI--VRALDYDGAEVGRREVLVP 85 (112)
T ss_pred HHHhHhhhhhccCCCceE---EEEEEEECCCC-----EEEEEEEEEEC-CCC--CEEEE--EEEEeCCCCEEEEEEEEEC
Confidence 334455555 44555433 33345554442 33333333333 553 33221 122346778888 45566
Q ss_pred CccccCCCeEEEEEEEEEeee
Q 036355 162 GFSQRSGNETKIDVNTTTTNT 182 (255)
Q Consensus 162 ~F~Q~~~ntt~v~~~l~~~~~ 182 (255)
+ +...+..+..++.....
T Consensus 86 ~---~~~~~~~~~v~v~Tt~~ 103 (112)
T PF14155_consen 86 P---SGERTVRVTVTVRTTAR 103 (112)
T ss_pred C---CCCcEEEEEEEEEecCC
Confidence 6 44455555666554443
No 9
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=87.15 E-value=0.93 Score=40.09 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=19.5
Q ss_pred eeEeEEEEEEEEEecCCCeeeEEE
Q 036355 118 KFLTMEISVKLEFENENDKMSLHY 141 (255)
Q Consensus 118 ~~l~~~l~~tl~~~NPN~k~~i~Y 141 (255)
..+...=+++++++|||+++.=++
T Consensus 104 l~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 104 LYLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred eEEEeccCeeEEccCCCCceeeeE
Confidence 567788899999999999875443
No 10
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=83.97 E-value=0.14 Score=33.83 Aligned_cols=10 Identities=40% Similarity=1.411 Sum_probs=4.9
Q ss_pred cccchhhHHH
Q 036355 60 SCRCFTCCAW 69 (255)
Q Consensus 60 ~~~c~~cc~~ 69 (255)
.|||++||||
T Consensus 25 gcccccc~cc 34 (56)
T TIGR03602 25 GCCCCCCCCC 34 (56)
T ss_pred CeEEEeccEE
Confidence 4655444443
No 11
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=83.36 E-value=0.59 Score=32.24 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=6.4
Q ss_pred cccchhhHHHHHHH
Q 036355 60 SCRCFTCCAWICIS 73 (255)
Q Consensus 60 ~~~c~~cc~~~~~~ 73 (255)
+..|..|....+++
T Consensus 29 rRrc~~~v~~v~~~ 42 (60)
T PF06072_consen 29 RRRCRLAVAIVFAV 42 (60)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455455444433
No 12
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=81.20 E-value=5.6 Score=31.57 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhheeee--eeeCCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCe
Q 036355 69 WICISVTAFLIIIFVLGFVAVGI--LRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDK 136 (255)
Q Consensus 69 ~~~~~i~~liil~~~a~li~~lv--~rPk~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k 136 (255)
|+.+.|.++ ++++++++++|.. -+++.|.+.+......+ .....+-+-++++|--.+
T Consensus 5 Wvt~~Is~~-ill~viglv~y~~l~~~~~pp~l~v~~~~~~r----------~~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 5 WVTFGISTL-ILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER----------MQTGQYYVPFAIHNLGGT 63 (122)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHhhccCCCCCeEEEeehheeE----------EeCCEEEEEEEEEeCCCc
Confidence 554444333 3345556666544 45688999887765543 234457777788887754
No 13
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=78.98 E-value=18 Score=29.14 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=41.2
Q ss_pred HHHhheeeeeee--CCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccC
Q 036355 83 VLGFVAVGILRS--SLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAI 160 (255)
Q Consensus 83 ~a~li~~lv~rP--k~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~v 160 (255)
+..+++|.++.. +.+..++.+.. .++. +-.+.+..+++|-. +..+..=.+++.+..++...++...
T Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~--~l~~---------~~~~~v~g~V~N~g-~~~i~~c~i~~~l~~~~~~~~n~~~ 99 (149)
T PF09624_consen 32 LIPFFGYYWLDKYLKKIELTLTSQK--RLQY---------SESFYVDGTVTNTG-KFTIKKCKITVKLYNDKQVSGNKFK 99 (149)
T ss_pred HHHHHHHHHHhhhcCCceEEEeeee--eeee---------ccEEEEEEEEEECC-CCEeeEEEEEEEEEeCCCccCchhh
Confidence 355555655555 44555544433 2332 33477889999998 4788877788888886655554433
Q ss_pred C
Q 036355 161 P 161 (255)
Q Consensus 161 p 161 (255)
.
T Consensus 100 ~ 100 (149)
T PF09624_consen 100 E 100 (149)
T ss_pred h
Confidence 3
No 14
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=78.01 E-value=23 Score=29.41 Aligned_cols=65 Identities=6% Similarity=0.155 Sum_probs=31.9
Q ss_pred EEEEEEEecCCCeeeEEEeCeEEEEEECCeE-EeeccCCCccccCCCeEEEEE---EEEEeeeecChHHHHHHHHH
Q 036355 124 ISVKLEFENENDKMSLHYEKLRVEIKAENVR-IGHTAIPGFSQRSGNETKIDV---NTTTTNTRIDDANAEILKLR 195 (255)
Q Consensus 124 l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~-Lg~~~vp~F~Q~~~ntt~v~~---~l~~~~~~v~~~~~~~L~~d 195 (255)
+.+.+.+...+..+.+.|..+-=+++=+|+. ++.+.+- +.+ ++.+ ...=....++++++.+|++.
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~----~~g---~F~A~evLAKhdekYmPpEv~~al~~~ 146 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTLE----KGN---HVLAHEVLAKHDENYTPPEVEKAMQEN 146 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEEC----CCC---EEEEeEEEeCCCCCCCCHHHHHHHHHh
Confidence 3455555555555666666554455544443 3445442 111 1222 11222345677777777653
No 15
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=77.29 E-value=9.3 Score=31.73 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeeee
Q 036355 67 CAWICISVTAFLIIIFVLGFVAVGIL 92 (255)
Q Consensus 67 c~~~~~~i~~liil~~~a~li~~lv~ 92 (255)
-.|+++++++++++++.++..+|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 45777777777777888888888765
No 16
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=70.74 E-value=1.4 Score=34.62 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhheeeeeee
Q 036355 62 RCFTCCAWICISVTAFLIIIFVLGFVAVGILRS 94 (255)
Q Consensus 62 ~c~~cc~~~~~~i~~liil~~~a~li~~lv~rP 94 (255)
.|..++.|..+.+++.++|+|-+..+ |++|.=
T Consensus 27 s~sra~~vagltvLa~LLiAGQa~Ta-Yfv~~Q 58 (114)
T PF09307_consen 27 SCSRALKVAGLTVLACLLIAGQAVTA-YFVFQQ 58 (114)
T ss_dssp ---------------------------------
T ss_pred CccchhHHHHHHHHHHHHHHhHHHHH-HHHHHh
Confidence 35677888888888888888877666 445553
No 17
>PRK05529 cell division protein FtsQ; Provisional
Probab=67.74 E-value=11 Score=33.58 Aligned_cols=47 Identities=6% Similarity=0.036 Sum_probs=28.4
Q ss_pred CCEEEEeeEEEeeeeecC------------CCCc------------eeEeEEEEEEEEEecCCCeeeEEEeC
Q 036355 96 LPHINVLKVHSSNISISE------------SSRQ------------KFLTMEISVKLEFENENDKMSLHYEK 143 (255)
Q Consensus 96 ~P~f~V~s~~v~~f~~s~------------~~~~------------~~l~~~l~~tl~~~NPN~k~~i~Y~~ 143 (255)
.|.|.|..+.|++-..-+ +.+- ..+-.-=+++++-+.|| .+.|.-.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~-tl~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPG-TIVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCC-EEEEEEEE
Confidence 489999999998543211 1000 11223346788888999 47777644
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=66.74 E-value=3.2 Score=32.95 Aligned_cols=10 Identities=10% Similarity=0.617 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 036355 69 WICISVTAFL 78 (255)
Q Consensus 69 ~~~~~i~~li 78 (255)
|++++|++++
T Consensus 2 W~l~~iii~~ 11 (130)
T PF12273_consen 2 WVLFAIIIVA 11 (130)
T ss_pred eeeHHHHHHH
Confidence 5544443333
No 19
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=66.12 E-value=5.9 Score=27.85 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=13.6
Q ss_pred HHHHHHHhheeeeeeeC
Q 036355 79 IIIFVLGFVAVGILRSS 95 (255)
Q Consensus 79 il~~~a~li~~lv~rPk 95 (255)
++++.++.+.|++.+|+
T Consensus 12 avaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 12 AVAAAAGAATWVIVQPR 28 (66)
T ss_pred HHHhhhceeEEEEECCC
Confidence 35666888899999998
No 20
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=65.31 E-value=17 Score=29.97 Aligned_cols=29 Identities=3% Similarity=0.133 Sum_probs=17.2
Q ss_pred EEEEEecCCCeeeEEEeCeEEEEEECCeEEe
Q 036355 126 VKLEFENENDKMSLHYEKLRVEIKAENVRIG 156 (255)
Q Consensus 126 ~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg 156 (255)
++++...++. +.+|=.+.+++.+.+....
T Consensus 67 f~VNL~~~~~--~~rylkv~i~L~~~~~~~~ 95 (162)
T PRK07021 67 FTVNLQPDDD--ADRVLYVGLTLRLPDEATR 95 (162)
T ss_pred EEEEcCCCCC--CceEEEEEEEEEECCHHHH
Confidence 4444433332 4678788888877765443
No 21
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=62.78 E-value=42 Score=27.64 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=21.6
Q ss_pred EEEEEEecCCCeeeEEEeCeEEEEEECCeE-EeeccC
Q 036355 125 SVKLEFENENDKMSLHYEKLRVEIKAENVR-IGHTAI 160 (255)
Q Consensus 125 ~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~-Lg~~~v 160 (255)
.+.+.+..-|.++.+.|..+-=+++=+|+- ++.+.+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 73 KVSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred EEEEEEecCCceEEEEEeccCchhhhcCCeEEEEEEe
Confidence 333344466667888887766666666664 335554
No 22
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=60.48 E-value=82 Score=26.08 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=25.9
Q ss_pred CCeeeEEEeCeEEEEEECCeE-EeeccCCCccccCCCeEEEEE-EE--EEeeeecChHHHHHHHHH
Q 036355 134 NDKMSLHYEKLRVEIKAENVR-IGHTAIPGFSQRSGNETKIDV-NT--TTTNTRIDDANAEILKLR 195 (255)
Q Consensus 134 N~k~~i~Y~~~~v~v~Y~g~~-Lg~~~vp~F~Q~~~ntt~v~~-~l--~~~~~~v~~~~~~~L~~d 195 (255)
+..+.+.|..+-=+++=+|+. ++.+.+. + + ++.+ ++ +=....++++++.+|++.
T Consensus 82 ~~~v~V~Y~GilPDlFrEGqgVVaeG~~~----~-g---~F~A~~vLAKHde~YmP~Ev~~al~~~ 139 (155)
T PRK13159 82 NAATQVEYTGILPDLFRDNQSVIANGRMQ----G-G---RFVANEVLAKHDETYMPKELKDAMAEG 139 (155)
T ss_pred CcEEEEEEccCCCccccCCCeEEEEEEEc----C-C---EEEEeEEEecCCCcCCCHHHHHHHHhc
Confidence 445666666554444444442 4455543 1 1 2222 11 122345677777777654
No 23
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=60.14 E-value=57 Score=25.98 Aligned_cols=75 Identities=9% Similarity=0.105 Sum_probs=47.5
Q ss_pred EEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEE-ECCeEEeeccC-C----------CccccC
Q 036355 100 NVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIK-AENVRIGHTAI-P----------GFSQRS 167 (255)
Q Consensus 100 ~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~-Y~g~~Lg~~~v-p----------~F~Q~~ 167 (255)
.++.+++.+..+.... .-.-.+.++.+++|..+ ....|-.+.+++. .+|+.+++-.+ | .-..++
T Consensus 49 ~~~~l~i~~~~~~~~~---~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~p 124 (149)
T PF11906_consen 49 DIDALKIESSDLRPVP---DGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPP 124 (149)
T ss_pred CcceEEEeeeeEEeec---CCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCC
Confidence 4455555443333221 12556888999999995 7888988999998 67888885444 4 223455
Q ss_pred CCeEEEEEEEE
Q 036355 168 GNETKIDVNTT 178 (255)
Q Consensus 168 ~ntt~v~~~l~ 178 (255)
+.+..+.+.+.
T Consensus 125 g~~~~~~~~~~ 135 (149)
T PF11906_consen 125 GESVPFRLRLE 135 (149)
T ss_pred CCeEEEEEEee
Confidence 55655555554
No 24
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=59.57 E-value=13 Score=31.57 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhheeeeeeeCCC
Q 036355 69 WICISVTAFLIIIFVLGFVAVGILRSSLP 97 (255)
Q Consensus 69 ~~~~~i~~liil~~~a~li~~lv~rPk~P 97 (255)
|-.++++++.+++++++.+++.+++|..|
T Consensus 3 WK~aF~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHHHHHhheeeEEEccCCC
Confidence 44444445555666677777888899866
No 25
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=58.73 E-value=85 Score=24.41 Aligned_cols=67 Identities=21% Similarity=0.363 Sum_probs=39.1
Q ss_pred EEeeccCCCccccCCCeEEEEEEEEEeeeec-ChHHHHHHHHHhcC-ceEEEEEEEEEEEEEEEeEEEEeeeeEE
Q 036355 154 RIGHTAIPGFSQRSGNETKIDVNTTTTNTRI-DDANAEILKLRYRQ-KAMLVDLFMTGDVGFSFGGLNIKGLPFE 226 (255)
Q Consensus 154 ~Lg~~~vp~F~Q~~~ntt~v~~~l~~~~~~v-~~~~~~~L~~d~~~-g~v~l~v~v~~~vr~kvg~~~s~~~~v~ 226 (255)
.+|...+|+..- +++.+. .. ..+...+ +.+...++.+++-. .++.+.++ +....++|.++...+.++
T Consensus 2 ~f~~~~lP~~~~-~~~~~~-~~--~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~--g~~~~~~g~l~~~~i~~~ 70 (125)
T PF12505_consen 2 PFATLDLPQIKI-KGNGTI-SI--IDQTLTITDQDAFTQFVTALLFNEEVTLTLR--GKTDTHLGGLPFSGIPFD 70 (125)
T ss_pred ceEEEECCCEEe-cCCceE-EE--eeeeEEecCHHHHHHHHHHHHhCCcEEEEEE--EeeeEEEccEEEEEEeec
Confidence 578889999988 333221 11 1222232 44555777777654 45666665 445788899876545443
No 26
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=54.13 E-value=38 Score=26.91 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=3.2
Q ss_pred EEEEECC
Q 036355 146 VEIKAEN 152 (255)
Q Consensus 146 v~v~Y~g 152 (255)
+.|.|.|
T Consensus 84 i~V~Y~G 90 (131)
T PF03100_consen 84 IPVVYTG 90 (131)
T ss_dssp EEEEEES
T ss_pred EEEEECC
Confidence 4444444
No 27
>PF00424 REV: REV protein (anti-repression trans-activator protein); InterPro: IPR000625 REV is a viral anti-repression trans-activator protein, which appears to act post-transcriptionally [] to relieve negative repression of GAG and ENV production. It is a phosphoprotein [, ] whose state of phosphorylation is mediated by a specific serine kinase activity present in the nucleus []. REV accumulates in the nucleoli [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ETF_B 1ETG_B 1ULL_B 3LPH_B 2X7L_R.
Probab=53.30 E-value=2 Score=32.27 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=10.7
Q ss_pred cccCCCCCCCCCcccccccc
Q 036355 14 HLQNPNPPLPQHQHQQQRTK 33 (255)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (255)
-||..||+|.++.|.+.|++
T Consensus 19 ~LyqsnPyP~~~GTr~aRRn 38 (91)
T PF00424_consen 19 ILYQSNPYPSPEGTRQARRN 38 (91)
T ss_dssp HHHHTS-S--S-S-HHHHHH
T ss_pred HHHccccCCCCCCccccccc
Confidence 58989988887777655544
No 28
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=52.57 E-value=42 Score=27.86 Aligned_cols=29 Identities=14% Similarity=0.441 Sum_probs=16.9
Q ss_pred EEEEEecCCCeeeEEEeCeEEEEEECCeEE
Q 036355 126 VKLEFENENDKMSLHYEKLRVEIKAENVRI 155 (255)
Q Consensus 126 ~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~L 155 (255)
++++...+++. ..+|=.+.+++.+.+...
T Consensus 74 fvVNL~~~~~~-~~ryLkv~i~L~~~~~~~ 102 (166)
T PRK12785 74 MLVNLAGDPGE-RVQYLKLKVVLEVKDEKV 102 (166)
T ss_pred EEEECCCCCCC-cceEEEEEEEEEECCHHH
Confidence 44444333321 357878888888776543
No 29
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=52.22 E-value=15 Score=38.12 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=12.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 036355 63 CFTCCAWICISVTAFLIIIFVLG 85 (255)
Q Consensus 63 c~~cc~~~~~~i~~liil~~~a~ 85 (255)
|+++|+.++++++++++++|++.
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVIC 159 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666553
No 30
>PHA02819 hypothetical protein; Provisional
Probab=51.58 E-value=23 Score=25.35 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036355 67 CAWICISVTAFLIIIFVL 84 (255)
Q Consensus 67 c~~~~~~i~~liil~~~a 84 (255)
-.|..+++++++++++++
T Consensus 44 ~~~~~~ii~l~~~~~~~~ 61 (71)
T PHA02819 44 FLRYYLIIGLVTIVFVII 61 (71)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 355555554444333333
No 31
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=50.72 E-value=32 Score=29.55 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.4
Q ss_pred CCCCCC
Q 036355 53 PNSKGH 58 (255)
Q Consensus 53 ~~~~~~ 58 (255)
.+++++
T Consensus 37 ~~~~~~ 42 (200)
T PF05473_consen 37 TRREKR 42 (200)
T ss_pred cccccc
Confidence 334444
No 32
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=49.07 E-value=6.6 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=2.7
Q ss_pred ccccC-CCCCCCCCccccccc
Q 036355 13 QHLQN-PNPPLPQHQHQQQRT 32 (255)
Q Consensus 13 ~~~~~-~~~~~~~~~~~~~~~ 32 (255)
.|+-. |++|.|+|++|..-.
T Consensus 9 ehipp~P~rPAPpPPtQNnQs 29 (47)
T PF04806_consen 9 EHIPPTPNRPAPPPPTQNNQS 29 (47)
T ss_dssp SS-----SS------------
T ss_pred hcCCCCCCCCCCCCCCccccc
Confidence 34544 899999999984433
No 33
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=48.85 E-value=14 Score=35.36 Aligned_cols=6 Identities=17% Similarity=-0.080 Sum_probs=2.3
Q ss_pred CCCccc
Q 036355 57 GHRSCR 62 (255)
Q Consensus 57 ~~~~~~ 62 (255)
++.+|+
T Consensus 75 k~~s~~ 80 (418)
T cd07912 75 PRHSIC 80 (418)
T ss_pred CCCCcc
Confidence 333433
No 34
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=47.55 E-value=12 Score=24.50 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=10.4
Q ss_pred HHHHHHHHHhheeeeeeeCC
Q 036355 77 FLIIIFVLGFVAVGILRSSL 96 (255)
Q Consensus 77 liil~~~a~li~~lv~rPk~ 96 (255)
+++.+.++++++|. |+|++
T Consensus 16 v~~~~~F~gi~~w~-~~~~~ 34 (49)
T PF05545_consen 16 VLFFVFFIGIVIWA-YRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHH-Hcccc
Confidence 33344455556664 68863
No 35
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=47.27 E-value=1.2e+02 Score=25.69 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=17.0
Q ss_pred eeCCCEEEEeeEEEeeeeecC
Q 036355 93 RSSLPHINVLKVHSSNISISE 113 (255)
Q Consensus 93 rPk~P~f~V~s~~v~~f~~s~ 113 (255)
.++.|.|.+++++...|+.++
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G 57 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG 57 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC
Confidence 467799999999988887654
No 36
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=47.07 E-value=9.5 Score=29.89 Aligned_cols=12 Identities=8% Similarity=0.013 Sum_probs=7.7
Q ss_pred heeeeeeeCCCE
Q 036355 87 VAVGILRSSLPH 98 (255)
Q Consensus 87 i~~lv~rPk~P~ 98 (255)
++|+++||+.=+
T Consensus 15 i~yf~iRPQkKr 26 (113)
T PRK06531 15 LIFFMQRQQKKQ 26 (113)
T ss_pred HHHheechHHHH
Confidence 356679996443
No 37
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.14 E-value=21 Score=30.32 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=18.3
Q ss_pred HhheeeeeeeCCCEEEEeeEEE---eeeeecCC
Q 036355 85 GFVAVGILRSSLPHINVLKVHS---SNISISES 114 (255)
Q Consensus 85 ~li~~lv~rPk~P~f~V~s~~v---~~f~~s~~ 114 (255)
.+++.+++.|+.|...+...+= ..|.++++
T Consensus 27 ~~i~~~vlsp~ee~t~~~~a~~~~~~~fqittt 59 (197)
T COG4698 27 VLIALFVLSPREEPTHLEDASEKSEKSFQITTT 59 (197)
T ss_pred HHhheeeccCCCCCchhhccCcccceeEEEEcc
Confidence 4555667889997766665543 24555543
No 38
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=44.58 E-value=28 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhheeeeeee
Q 036355 71 CISVTAFLIIIFVLGFVAVGILRS 94 (255)
Q Consensus 71 ~~~i~~liil~~~a~li~~lv~rP 94 (255)
.++|++..+++++.+..+|..|-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 345566667778888888888877
No 39
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=44.37 E-value=33 Score=19.78 Aligned_cols=21 Identities=14% Similarity=0.496 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhee
Q 036355 69 WICISVTAFLIIIFVLGFVAV 89 (255)
Q Consensus 69 ~~~~~i~~liil~~~a~li~~ 89 (255)
|+..+..++.+++++.|+++|
T Consensus 7 w~~~i~al~~lv~~iTGl~l~ 27 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLILW 27 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 554444445555666776654
No 40
>CHL00020 psbN photosystem II protein N
Probab=44.31 E-value=21 Score=23.04 Aligned_cols=24 Identities=4% Similarity=0.128 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhheeeeeee
Q 036355 71 CISVTAFLIIIFVLGFVAVGILRS 94 (255)
Q Consensus 71 ~~~i~~liil~~~a~li~~lv~rP 94 (255)
.++|++..+++++.+..+|..|-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 344555666778888888888877
No 41
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=43.19 E-value=16 Score=37.85 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q 036355 70 ICISVTAFLIIIFVLGFVA 88 (255)
Q Consensus 70 ~~~~i~~liil~~~a~li~ 88 (255)
++.++++++.++.++|+++
T Consensus 141 ~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 141 CLGILLLLLTLIILFGVIC 159 (806)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445554444454455543
No 42
>PHA03054 IMV membrane protein; Provisional
Probab=42.97 E-value=31 Score=24.67 Aligned_cols=18 Identities=22% Similarity=0.753 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036355 67 CAWICISVTAFLIIIFVL 84 (255)
Q Consensus 67 c~~~~~~i~~liil~~~a 84 (255)
-.|..+++++++++++++
T Consensus 46 ~~~~~~ii~l~~v~~~~l 63 (72)
T PHA03054 46 WGWYWLIIIFFIVLILLL 63 (72)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 355555554444333333
No 43
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=42.26 E-value=67 Score=24.99 Aligned_cols=26 Identities=4% Similarity=0.319 Sum_probs=20.0
Q ss_pred eEEEEEEEEEecCCCeeeEEEeCeEEE
Q 036355 121 TMEISVKLEFENENDKMSLHYEKLRVE 147 (255)
Q Consensus 121 ~~~l~~tl~~~NPN~k~~i~Y~~~~v~ 147 (255)
..++..++.+.||. .+++..+.+.++
T Consensus 99 g~~~~~~~~l~NPS-~~ti~lG~v~~~ 124 (125)
T PF12505_consen 99 GINLNATVTLPNPS-PLTIDLGNVTLN 124 (125)
T ss_pred cEEEEEEEEEcCCC-eEEEEeccEEEe
Confidence 56678888889999 588877776654
No 44
>PRK01844 hypothetical protein; Provisional
Probab=42.16 E-value=26 Score=25.19 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhe
Q 036355 69 WICISVTAFLIIIFVLGFVA 88 (255)
Q Consensus 69 ~~~~~i~~liil~~~a~li~ 88 (255)
|+.+++.++.+++|+++.+|
T Consensus 4 ~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55444444555566655543
No 45
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=41.86 E-value=2.6e+02 Score=25.10 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=14.7
Q ss_pred eeEeEEEEEEEEEecCCCe
Q 036355 118 KFLTMEISVKLEFENENDK 136 (255)
Q Consensus 118 ~~l~~~l~~tl~~~NPN~k 136 (255)
..+..+=+++++++|.|..
T Consensus 82 l~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 82 LVIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEEecCceEEEEecCCCc
Confidence 4566666788899999886
No 46
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=41.51 E-value=14 Score=21.05 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=10.1
Q ss_pred HHHHHHhheeeeeeeCC
Q 036355 80 IIFVLGFVAVGILRSSL 96 (255)
Q Consensus 80 l~~~a~li~~lv~rPk~ 96 (255)
.+++++-++|..+||.+
T Consensus 8 ~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 8 AVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 34555556666778753
No 47
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=41.14 E-value=42 Score=27.03 Aligned_cols=15 Identities=7% Similarity=0.496 Sum_probs=9.7
Q ss_pred EEeCeEEEEEECCeE
Q 036355 140 HYEKLRVEIKAENVR 154 (255)
Q Consensus 140 ~Y~~~~v~v~Y~g~~ 154 (255)
+|=..++.+.+++..
T Consensus 63 ~ylk~~i~l~~~~~~ 77 (142)
T PRK07718 63 NFIRIQFKIETDSKK 77 (142)
T ss_pred CEEEEEEEEEECCHH
Confidence 466677777776544
No 48
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=39.77 E-value=25 Score=22.72 Aligned_cols=23 Identities=4% Similarity=0.245 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhheeeeeee
Q 036355 72 ISVTAFLIIIFVLGFVAVGILRS 94 (255)
Q Consensus 72 ~~i~~liil~~~a~li~~lv~rP 94 (255)
+++++..+++++.+..+|..|-|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 34555666778888888988876
No 49
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=39.77 E-value=29 Score=28.68 Aligned_cols=19 Identities=16% Similarity=0.210 Sum_probs=13.4
Q ss_pred HHHHHhheeeeeeeCCCEE
Q 036355 81 IFVLGFVAVGILRSSLPHI 99 (255)
Q Consensus 81 ~~~a~li~~lv~rPk~P~f 99 (255)
+++++++||+.+|+++-.|
T Consensus 64 l~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 64 LGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHhheeEEEecccCcc
Confidence 4566677888888877543
No 50
>PF15050 SCIMP: SCIMP protein
Probab=38.94 E-value=16 Score=28.99 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeeee
Q 036355 68 AWICISVTAFLIIIFVLGFVAVGILR 93 (255)
Q Consensus 68 ~~~~~~i~~liil~~~a~li~~lv~r 93 (255)
+|+++++.|++ +-..+|+|+|-++|
T Consensus 8 FWiiLAVaII~-vS~~lglIlyCvcR 32 (133)
T PF15050_consen 8 FWIILAVAIIL-VSVVLGLILYCVCR 32 (133)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 57766665443 34456777776655
No 51
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=38.50 E-value=35 Score=30.07 Aligned_cols=12 Identities=17% Similarity=-0.081 Sum_probs=8.4
Q ss_pred HHHhheeeeeee
Q 036355 83 VLGFVAVGILRS 94 (255)
Q Consensus 83 ~a~li~~lv~rP 94 (255)
++.++.|++|||
T Consensus 237 ~~Ia~aW~~yRP 248 (248)
T PF07787_consen 237 LTIALAWLFYRP 248 (248)
T ss_pred HHHHHhheeeCc
Confidence 334466999998
No 52
>PHA02975 hypothetical protein; Provisional
Probab=38.46 E-value=44 Score=23.79 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 036355 68 AWICISVTAFLI 79 (255)
Q Consensus 68 ~~~~~~i~~lii 79 (255)
.|..++++++++
T Consensus 43 ~~~~~ii~i~~v 54 (69)
T PHA02975 43 LSIILIIFIIFI 54 (69)
T ss_pred hHHHHHHHHHHH
Confidence 455544443333
No 53
>PHA02844 putative transmembrane protein; Provisional
Probab=38.14 E-value=30 Score=25.03 Aligned_cols=24 Identities=4% Similarity=-0.121 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhheee
Q 036355 67 CAWICISVTAFLIIIFVLGFVAVG 90 (255)
Q Consensus 67 c~~~~~~i~~liil~~~a~li~~l 90 (255)
-.|..+++++++++++++..++||
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444444433333333343
No 54
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=38.03 E-value=24 Score=30.80 Aligned_cols=16 Identities=0% Similarity=-0.054 Sum_probs=8.5
Q ss_pred HHhheeeeeeeCCCEE
Q 036355 84 LGFVAVGILRSSLPHI 99 (255)
Q Consensus 84 a~li~~lv~rPk~P~f 99 (255)
.++.++-++|||....
T Consensus 175 Ga~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 175 GAYYYFKFYKPKQEEK 190 (218)
T ss_pred ceEEEEEEeccccccc
Confidence 3334444667766543
No 55
>PHA02650 hypothetical protein; Provisional
Probab=37.66 E-value=29 Score=25.41 Aligned_cols=23 Identities=22% Similarity=0.024 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhee
Q 036355 67 CAWICISVTAFLIIIFVLGFVAV 89 (255)
Q Consensus 67 c~~~~~~i~~liil~~~a~li~~ 89 (255)
-.|..+++++++++++++.+++|
T Consensus 47 ~~~~~~ii~i~~v~i~~l~~flY 69 (81)
T PHA02650 47 FNGQNFIFLIFSLIIVALFSFFV 69 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544444433333333333
No 56
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=37.62 E-value=32 Score=27.14 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 036355 69 WICISVTAFLI 79 (255)
Q Consensus 69 ~~~~~i~~lii 79 (255)
|.++++++||+
T Consensus 5 ~~iii~~i~l~ 15 (130)
T PF12273_consen 5 FAIIIVAILLF 15 (130)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 57
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.91 E-value=1.6e+02 Score=24.00 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=7.2
Q ss_pred ecChHHHHHHHHH
Q 036355 183 RIDDANAEILKLR 195 (255)
Q Consensus 183 ~v~~~~~~~L~~d 195 (255)
..++++..+|+++
T Consensus 127 Y~p~ev~~~~~~~ 139 (148)
T PRK13254 127 YMPKEVADALKKA 139 (148)
T ss_pred CCCHHHHHHHHHh
Confidence 3455555566654
No 58
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=36.78 E-value=32 Score=26.96 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhheeeeeee
Q 036355 73 SVTAFLIIIFVLGFVAVGILRS 94 (255)
Q Consensus 73 ~i~~liil~~~a~li~~lv~rP 94 (255)
+++++++-++++.++++++++-
T Consensus 67 lii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 67 LIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHheeec
Confidence 3444444455566666776653
No 59
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=36.68 E-value=14 Score=28.02 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.4
Q ss_pred HHHHHHhheeeeee
Q 036355 80 IIFVLGFVAVGILR 93 (255)
Q Consensus 80 l~~~a~li~~lv~r 93 (255)
+++++++++|++++
T Consensus 79 v~~lv~~l~w~f~~ 92 (96)
T PTZ00382 79 VGGLVGFLCWWFVC 92 (96)
T ss_pred HHHHHHHHhheeEE
Confidence 33444445555443
No 60
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=36.57 E-value=34 Score=30.97 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.6
Q ss_pred ccchhhHHHHHHH
Q 036355 61 CRCFTCCAWICIS 73 (255)
Q Consensus 61 ~~c~~cc~~~~~~ 73 (255)
..|++||+.++++
T Consensus 257 ~k~~~~~Llil~v 269 (283)
T COG5325 257 KKCRFYLLLILLV 269 (283)
T ss_pred ccchhhHHHHHHH
Confidence 3456666544333
No 61
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=36.34 E-value=31 Score=33.03 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhheeeeeee
Q 036355 74 VTAFLIIIFVLGFVAVGILRS 94 (255)
Q Consensus 74 i~~liil~~~a~li~~lv~rP 94 (255)
++++++++.+.++-+|+.++|
T Consensus 38 Vl~iIii~~~~~~Y~~~~~~~ 58 (416)
T PF04415_consen 38 VLIIIIIFIVYNIYYFLQNQP 58 (416)
T ss_pred hHhHHHHHHHHHHHHHhhhhH
Confidence 444444444444444555665
No 62
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=35.98 E-value=48 Score=25.20 Aligned_cols=8 Identities=38% Similarity=0.289 Sum_probs=3.6
Q ss_pred hhee-eeee
Q 036355 86 FVAV-GILR 93 (255)
Q Consensus 86 li~~-lv~r 93 (255)
+|+| +++|
T Consensus 80 ~IyYFVILR 88 (101)
T PF06024_consen 80 AIYYFVILR 88 (101)
T ss_pred hheEEEEEe
Confidence 3444 4444
No 63
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.61 E-value=13 Score=34.10 Aligned_cols=8 Identities=13% Similarity=0.060 Sum_probs=3.4
Q ss_pred CCCCCCCc
Q 036355 53 PNSKGHRS 60 (255)
Q Consensus 53 ~~~~~~~~ 60 (255)
+++|-|+.
T Consensus 263 ~qkkaRK~ 270 (297)
T KOG0810|consen 263 YQKKARKW 270 (297)
T ss_pred HHHHhhhc
Confidence 34444443
No 64
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=35.18 E-value=46 Score=21.08 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=11.2
Q ss_pred HHHHHhheeeeeeeC
Q 036355 81 IFVLGFVAVGILRSS 95 (255)
Q Consensus 81 ~~~a~li~~lv~rPk 95 (255)
+-++|.++|++++.+
T Consensus 32 ~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 32 FPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHhheEEEeCC
Confidence 467778889988764
No 65
>PRK00523 hypothetical protein; Provisional
Probab=34.90 E-value=47 Score=23.91 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 036355 72 ISVTAFLIIIFVLGFV 87 (255)
Q Consensus 72 ~~i~~liil~~~a~li 87 (255)
+.+.++++++|+++.+
T Consensus 8 I~l~i~~li~G~~~Gf 23 (72)
T PRK00523 8 LGLGIPLLIVGGIIGY 23 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344445555444
No 66
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=34.66 E-value=17 Score=34.50 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhheeeee
Q 036355 71 CISVTAFLIIIFVLGFVAVGIL 92 (255)
Q Consensus 71 ~~~i~~liil~~~a~li~~lv~ 92 (255)
-|.|.++|++.|+++|+.|.++
T Consensus 371 GIsvavvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 371 GISVAVVVVVGGLVGFLCWWFI 392 (397)
T ss_pred eeeehhHHHHHHHHHHHhhhee
Confidence 4455666677788888887554
No 67
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=34.63 E-value=44 Score=20.73 Aligned_cols=9 Identities=33% Similarity=0.349 Sum_probs=4.3
Q ss_pred CCCCCCCcc
Q 036355 19 NPPLPQHQH 27 (255)
Q Consensus 19 ~~~~~~~~~ 27 (255)
.+|.|++|.
T Consensus 2 pp~~Y~~~~ 10 (37)
T PF12734_consen 2 PPPGYPQQP 10 (37)
T ss_pred cCCCCCCCC
Confidence 445555433
No 68
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=34.48 E-value=48 Score=26.98 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=13.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhheeeeeeeC
Q 036355 62 RCFTCCAWICISVTAFLIIIFVLGFVAVGILRSS 95 (255)
Q Consensus 62 ~c~~cc~~~~~~i~~liil~~~a~li~~lv~rPk 95 (255)
||..-|.|+.+=++++ ++|++-++ +=|+|+
T Consensus 35 l~s~Sg~~l~lG~lvl--lvGiaMAv--~GYwp~ 64 (141)
T PF10177_consen 35 LCSPSGLFLLLGILVL--LVGIAMAV--LGYWPK 64 (141)
T ss_pred EecHHHHHHHHHHHHH--HHhhHhhe--eecccc
Confidence 4555555554433333 34444333 335676
No 69
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=34.33 E-value=44 Score=25.51 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 036355 69 WICISVTAFLIIIF 82 (255)
Q Consensus 69 ~~~~~i~~liil~~ 82 (255)
|.++++.++|++++
T Consensus 22 w~FWlv~~liill~ 35 (102)
T PF11669_consen 22 WYFWLVWVLIILLS 35 (102)
T ss_pred HHHHHHHHHHHHHH
Confidence 55444434444333
No 70
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=34.22 E-value=53 Score=25.58 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEEEEecCC----CeeeEEEeC--eEEEEEECCeE
Q 036355 124 ISVKLEFENEN----DKMSLHYEK--LRVEIKAENVR 154 (255)
Q Consensus 124 l~~tl~~~NPN----~k~~i~Y~~--~~v~v~Y~g~~ 154 (255)
.--++-+.||| +.+.++|+. ..|.+.|+|..
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~k 87 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNKK 87 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEEECCcE
Confidence 44556677887 346677765 44677776643
No 71
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.07 E-value=24 Score=29.02 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhheeeeeee
Q 036355 69 WICISVTAFLIIIFVLGFVAVGILRS 94 (255)
Q Consensus 69 ~~~~~i~~liil~~~a~li~~lv~rP 94 (255)
|..+++++++++++.+++.+|....|
T Consensus 8 ~i~ii~viflai~~s~~~~~~~s~~P 33 (161)
T COG5353 8 IIIIILVIFLAIILSIALFFWKSMKP 33 (161)
T ss_pred eehhHHHHHHHHHHHHHHHHhHhcCc
Confidence 44455555566667777777877666
No 72
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=33.88 E-value=28 Score=22.90 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=8.9
Q ss_pred HHHHHhheeeeeeeCC
Q 036355 81 IFVLGFVAVGILRSSL 96 (255)
Q Consensus 81 ~~~a~li~~lv~rPk~ 96 (255)
+..+++++| +|+|+.
T Consensus 21 ~~Figiv~w-a~~p~~ 35 (48)
T cd01324 21 LFFLGVVVW-AFRPGR 35 (48)
T ss_pred HHHHHHHHH-HhCCCc
Confidence 345556666 478854
No 73
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=33.40 E-value=53 Score=27.23 Aligned_cols=26 Identities=4% Similarity=0.133 Sum_probs=17.4
Q ss_pred EEEEEecCCCeeeEEEeCeEEEEEECCeE
Q 036355 126 VKLEFENENDKMSLHYEKLRVEIKAENVR 154 (255)
Q Consensus 126 ~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~ 154 (255)
++++...++ +.+|=...+++.+++..
T Consensus 76 fvvNl~~~~---~~ryLkv~i~l~~~d~~ 101 (170)
T PRK05696 76 FVFNVPGNG---RDRLVQIKVQLMVRGSD 101 (170)
T ss_pred EEEEecCCC---CceEEEEEEEEEECCHH
Confidence 555554444 46788888888887654
No 74
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.31 E-value=2.8e+02 Score=23.02 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=8.6
Q ss_pred eeecChHHHHHHHH
Q 036355 181 NTRIDDANAEILKL 194 (255)
Q Consensus 181 ~~~v~~~~~~~L~~ 194 (255)
...++++++.+|++
T Consensus 132 ekYmPpEv~~al~~ 145 (160)
T PRK13165 132 ENYTPPEVEEAMKK 145 (160)
T ss_pred CCCCCHHHHHHHHh
Confidence 34466777766654
No 75
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=32.75 E-value=45 Score=21.24 Aligned_cols=12 Identities=33% Similarity=0.229 Sum_probs=6.2
Q ss_pred HHHhheeeeeee
Q 036355 83 VLGFVAVGILRS 94 (255)
Q Consensus 83 ~a~li~~lv~rP 94 (255)
++++++|+++|-
T Consensus 27 vl~~~l~~~~rR 38 (40)
T PF08693_consen 27 VLGAFLFFWYRR 38 (40)
T ss_pred HHHHHhheEEec
Confidence 334455566664
No 76
>PHA02692 hypothetical protein; Provisional
Probab=32.48 E-value=54 Score=23.42 Aligned_cols=9 Identities=11% Similarity=0.553 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 036355 67 CAWICISVT 75 (255)
Q Consensus 67 c~~~~~~i~ 75 (255)
-.|..++++
T Consensus 43 ~~~~~~ii~ 51 (70)
T PHA02692 43 VPWTTVFLI 51 (70)
T ss_pred cchHHHHHH
Confidence 345544443
No 77
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=32.07 E-value=1.4e+02 Score=22.28 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=35.0
Q ss_pred eEeEEEEEEEEEecCCCeeeEE---EeCeEEEEEECCeEEe--eccCCCccccCCCeEEEEEEEE
Q 036355 119 FLTMEISVKLEFENENDKMSLH---YEKLRVEIKAENVRIG--HTAIPGFSQRSGNETKIDVNTT 178 (255)
Q Consensus 119 ~l~~~l~~tl~~~NPN~k~~i~---Y~~~~v~v~Y~g~~Lg--~~~vp~F~Q~~~ntt~v~~~l~ 178 (255)
.+.-++++.+++.||... .++ -.=....+.|.|.... .........+|+.+..+.+.+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~-~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSE-PLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS--EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred cCCCCEEEEEEEEeCCcC-ccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 456679999999999842 222 1113456688888653 3334455567777777776654
No 78
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.04 E-value=22 Score=28.18 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=8.0
Q ss_pred HHHHHHhheeeeee-eCCCEEEEee
Q 036355 80 IIFVLGFVAVGILR-SSLPHINVLK 103 (255)
Q Consensus 80 l~~~a~li~~lv~r-Pk~P~f~V~s 103 (255)
++|++++|+|++-| -|++...++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34455556666654 3555555544
No 79
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=31.83 E-value=64 Score=23.51 Aligned_cols=6 Identities=50% Similarity=1.874 Sum_probs=3.1
Q ss_pred hhHHHH
Q 036355 65 TCCAWI 70 (255)
Q Consensus 65 ~cc~~~ 70 (255)
.||||-
T Consensus 27 l~Cc~P 32 (82)
T PF04505_consen 27 LCCCWP 32 (82)
T ss_pred HHHHhh
Confidence 455553
No 80
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.52 E-value=20 Score=32.76 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=6.6
Q ss_pred cchhhHHHHHHHHH
Q 036355 62 RCFTCCAWICISVT 75 (255)
Q Consensus 62 ~c~~cc~~~~~~i~ 75 (255)
++-.||||.|++++
T Consensus 268 RK~k~i~ii~~iii 281 (297)
T KOG0810|consen 268 RKWKIIIIIILIII 281 (297)
T ss_pred hhceeeeehHHHHH
Confidence 44455555544443
No 81
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=31.36 E-value=14 Score=21.30 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=9.2
Q ss_pred HHHHHhheeeeeeeCC
Q 036355 81 IFVLGFVAVGILRSSL 96 (255)
Q Consensus 81 ~~~a~li~~lv~rPk~ 96 (255)
+++.+-++|..+||.+
T Consensus 8 ~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 8 VGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHhCHHh
Confidence 3444555566678753
No 82
>PHA03049 IMV membrane protein; Provisional
Probab=28.88 E-value=25 Score=24.81 Aligned_cols=18 Identities=22% Similarity=0.678 Sum_probs=12.1
Q ss_pred HHHHHHHHHhheeeeeee
Q 036355 77 FLIIIFVLGFVAVGILRS 94 (255)
Q Consensus 77 liil~~~a~li~~lv~rP 94 (255)
+++-++++++|+|.+|+-
T Consensus 8 ~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334456677888888874
No 83
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=28.58 E-value=32 Score=20.30 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=9.0
Q ss_pred HHHHHhheeeeeeeCC
Q 036355 81 IFVLGFVAVGILRSSL 96 (255)
Q Consensus 81 ~~~a~li~~lv~rPk~ 96 (255)
+++++-+++.++||.+
T Consensus 13 ~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 13 LGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHhCccc
Confidence 3444445566678853
No 84
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=28.46 E-value=23 Score=27.54 Aligned_cols=12 Identities=17% Similarity=-0.161 Sum_probs=7.4
Q ss_pred HhheeeeeeeCC
Q 036355 85 GFVAVGILRSSL 96 (255)
Q Consensus 85 ~li~~lv~rPk~ 96 (255)
++++|+++||+.
T Consensus 15 ~i~yF~~iRPQk 26 (109)
T PRK05886 15 GGFMYFASRRQR 26 (109)
T ss_pred HHHHHHHccHHH
Confidence 344556789964
No 85
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.46 E-value=68 Score=22.96 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 036355 69 WICISVTAFLIIIFVLGF 86 (255)
Q Consensus 69 ~~~~~i~~liil~~~a~l 86 (255)
|+.++++++.+++|+++.
T Consensus 4 ~lail~ivl~ll~G~~~G 21 (71)
T COG3763 4 WLAILLIVLALLAGLIGG 21 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444445555666655
No 86
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.46 E-value=32 Score=31.57 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=9.3
Q ss_pred HHHHHHHHhheeeeee
Q 036355 78 LIIIFVLGFVAVGILR 93 (255)
Q Consensus 78 iil~~~a~li~~lv~r 93 (255)
|+++.++-+|+||++|
T Consensus 265 IliIVLIMvIIYLILR 280 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445556688776
No 87
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=27.38 E-value=56 Score=29.65 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=12.1
Q ss_pred HHHHHHHHhheeeeeeeCC
Q 036355 78 LIIIFVLGFVAVGILRSSL 96 (255)
Q Consensus 78 iil~~~a~li~~lv~rPk~ 96 (255)
++++.++++|.|+|.|=|.
T Consensus 281 La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 281 LAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHHHHhheeEeccc
Confidence 3344556677898887543
No 88
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.08 E-value=27 Score=29.55 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=9.8
Q ss_pred EEeCeEEEEEECCeE
Q 036355 140 HYEKLRVEIKAENVR 154 (255)
Q Consensus 140 ~Y~~~~v~v~Y~g~~ 154 (255)
+|=.+.+++.+.+..
T Consensus 103 ryLkv~i~Le~~~~~ 117 (182)
T PRK08455 103 RYLKTSISLELSNEK 117 (182)
T ss_pred eEEEEEEEEEECCHh
Confidence 677777777666543
No 89
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.07 E-value=56 Score=23.80 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=5.7
Q ss_pred HHHhheeeeeee
Q 036355 83 VLGFVAVGILRS 94 (255)
Q Consensus 83 ~a~li~~lv~rP 94 (255)
+++..+|....|
T Consensus 19 i~~~~~~~~~~~ 30 (85)
T PF11337_consen 19 IIGIYYFFNGNP 30 (85)
T ss_pred HHHHHHhhcCch
Confidence 444455544444
No 90
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=27.04 E-value=99 Score=22.84 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.2
Q ss_pred HHHhhe
Q 036355 83 VLGFVA 88 (255)
Q Consensus 83 ~a~li~ 88 (255)
++++++
T Consensus 50 ivg~LL 55 (93)
T PF08999_consen 50 IVGALL 55 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 91
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=26.29 E-value=65 Score=22.01 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=8.3
Q ss_pred HHHHhheeeeeeeC
Q 036355 82 FVLGFVAVGILRSS 95 (255)
Q Consensus 82 ~~a~li~~lv~rPk 95 (255)
.++++++|+.-||+
T Consensus 43 ~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 43 LFIVVFVYLKTRPR 56 (56)
T ss_pred HHHhheeEEeccCC
Confidence 34445667777774
No 92
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.28 E-value=1.3e+02 Score=23.44 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=11.5
Q ss_pred EEEEEEEEEecCCCe
Q 036355 122 MEISVKLEFENENDK 136 (255)
Q Consensus 122 ~~l~~tl~~~NPN~k 136 (255)
.-.+.++.+.|-|++
T Consensus 52 ~~y~y~i~ayn~~Gk 66 (113)
T COG5294 52 PGYEYTITAYNKNGK 66 (113)
T ss_pred ccceeeehhhccCCc
Confidence 356788999998874
No 93
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=26.27 E-value=69 Score=26.52 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHhheeeeee---eCCCEEEEee
Q 036355 81 IFVLGFVAVGILR---SSLPHINVLK 103 (255)
Q Consensus 81 ~~~a~li~~lv~r---Pk~P~f~V~s 103 (255)
+++++...|..-+ |+.|++++.+
T Consensus 16 ~a~~g~~~~~~~~~~~p~~p~It~~s 41 (161)
T PF10969_consen 16 AAVVGVGWWQLRRGSDPQDPEITAYS 41 (161)
T ss_pred HHHHHHHHHHhCCCCCCCCcEEEEEE
Confidence 3344444565444 6777777653
No 94
>PF07184 CTV_P33: Citrus tristeza virus P33 protein; InterPro: IPR010803 This family consists of several Citrus tristeza virus (CTV) P33 proteins. The function of P33 is unclear although it is known that the protein is not needed for virion formation [].
Probab=26.00 E-value=35 Score=29.52 Aligned_cols=24 Identities=29% Similarity=0.694 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 036355 64 FTCCAWICISVTAFLIIIFVLGFV 87 (255)
Q Consensus 64 ~~cc~~~~~~i~~liil~~~a~li 87 (255)
+.||-..|..++-++++-|++++|
T Consensus 278 rvccyavcvlvvs~limsgllaii 301 (303)
T PF07184_consen 278 RVCCYAVCVLVVSLLIMSGLLAII 301 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcchheE
Confidence 455656677676677777766655
No 95
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=25.96 E-value=3e+02 Score=20.94 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=23.0
Q ss_pred eCCCEEEEeeEEEeeeee-cCCCCc-----eeEeEEEEEEEEEecCCCeeeEE
Q 036355 94 SSLPHINVLKVHSSNISI-SESSRQ-----KFLTMEISVKLEFENENDKMSLH 140 (255)
Q Consensus 94 Pk~P~f~V~s~~v~~f~~-s~~~~~-----~~l~~~l~~tl~~~NPN~k~~i~ 140 (255)
=+.|..++...-+++=.. ...... ..-+..+-+++...|-. +..+.
T Consensus 30 ~~aP~~sv~a~Vv~Kr~~~~~~~~~~~~~~~~~~~~YyvtFe~e~G~-r~ef~ 81 (110)
T PF10694_consen 30 NNAPVRSVPATVVDKRTEVSTHRRSRQREVGSESTEYYVTFEFESGD-RREFR 81 (110)
T ss_dssp ----EEEEEEEEEEEEEEEEEESGG--SS-SS-EEEEEEEEEESSSS-SEEEE
T ss_pred CCCCcEEEEEEEEEeEeEEeCCCCCCCCccCCCceEEEEEEEECCCC-EEEEE
Confidence 356888887766664222 111100 12466777888888876 44444
No 96
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=25.90 E-value=31 Score=35.80 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=0.0
Q ss_pred cchhhHH-----------------HHHHHHHHHHHHHHHHHhheeeeeeeC
Q 036355 62 RCFTCCA-----------------WICISVTAFLIIIFVLGFVAVGILRSS 95 (255)
Q Consensus 62 ~c~~cc~-----------------~~~~~i~~liil~~~a~li~~lv~rPk 95 (255)
||++||+ ..|.-+.+++++++.+..|++.+.+-|
T Consensus 128 ccc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i~~ligv~~~fvtnk 178 (865)
T KOG4331|consen 128 CCCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAIELLIGVFRAFVTNK 178 (865)
T ss_pred heeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
No 97
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=25.04 E-value=46 Score=20.30 Aligned_cols=8 Identities=13% Similarity=-0.168 Sum_probs=3.5
Q ss_pred HHHHhhee
Q 036355 82 FVLGFVAV 89 (255)
Q Consensus 82 ~~a~li~~ 89 (255)
++..+++|
T Consensus 16 t~~ILvFW 23 (34)
T PF08113_consen 16 TAFILVFW 23 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.97 E-value=36 Score=26.99 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhheeeeee
Q 036355 76 AFLIIIFVLGFVAVGILR 93 (255)
Q Consensus 76 ~liil~~~a~li~~lv~r 93 (255)
++-+++|++++|++++|.
T Consensus 70 i~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344556666666555443
No 99
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=24.75 E-value=55 Score=20.50 Aligned_cols=7 Identities=14% Similarity=-0.178 Sum_probs=3.6
Q ss_pred hheeeee
Q 036355 86 FVAVGIL 92 (255)
Q Consensus 86 li~~lv~ 92 (255)
+|+|+++
T Consensus 26 iif~f~l 32 (43)
T PF11395_consen 26 IIFWFSL 32 (43)
T ss_pred HHHHHHH
Confidence 3556543
No 100
>PF14927 Neurensin: Neurensin
Probab=24.50 E-value=2.3e+02 Score=22.99 Aligned_cols=18 Identities=6% Similarity=-0.007 Sum_probs=8.2
Q ss_pred HHHHHH-HhheeeeeeeCCCE
Q 036355 79 IIIFVL-GFVAVGILRSSLPH 98 (255)
Q Consensus 79 il~~~a-~li~~lv~rPk~P~ 98 (255)
+++|++ .++.|++ |++++
T Consensus 55 Ll~Gi~~l~vgY~v--P~~~e 73 (140)
T PF14927_consen 55 LLLGIVALTVGYLV--PPKIE 73 (140)
T ss_pred HHHHHHHHHhhccc--CCcce
Confidence 334443 3445653 64444
No 101
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=24.47 E-value=51 Score=27.36 Aligned_cols=9 Identities=22% Similarity=0.206 Sum_probs=7.4
Q ss_pred hheeeeeee
Q 036355 86 FVAVGILRS 94 (255)
Q Consensus 86 li~~lv~rP 94 (255)
.++|+.+||
T Consensus 20 y~~W~~~rp 28 (157)
T PF06092_consen 20 YFLWLTLRP 28 (157)
T ss_pred HhhhhccCC
Confidence 677888898
No 102
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=24.45 E-value=38 Score=26.33 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=8.2
Q ss_pred hheeeeeeeC--CCEEEE
Q 036355 86 FVAVGILRSS--LPHINV 101 (255)
Q Consensus 86 li~~lv~rPk--~P~f~V 101 (255)
+++||++--+ .|.|.|
T Consensus 11 li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHccccCceEEEE
Confidence 5556554433 366654
No 103
>PTZ00116 signal peptidase; Provisional
Probab=24.44 E-value=2.9e+02 Score=23.56 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=29.4
Q ss_pred eCCCEEEEeeEEEeeeeecCC--CCceeEeEEEEEEEEE-ecCCCeeeEEEeCeEEEEEECC
Q 036355 94 SSLPHINVLKVHSSNISISES--SRQKFLTMEISVKLEF-ENENDKMSLHYEKLRVEIKAEN 152 (255)
Q Consensus 94 Pk~P~f~V~s~~v~~f~~s~~--~~~~~l~~~l~~tl~~-~NPN~k~~i~Y~~~~v~v~Y~g 152 (255)
.+.|...++=-.|.+|.+.+. .+...++.++++.++- -|=|.|.-+-| +.+.|.+
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy----v~a~Y~t 93 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLY----VLVTYET 93 (185)
T ss_pred CCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEEE----EEEEEcC
Confidence 345555555445566664432 2234555555555543 57777765554 4455643
No 104
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=24.16 E-value=4.7e+02 Score=22.62 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=31.8
Q ss_pred eeEeEEEEEEEEEecCCCeeeEEEeC--eEEEEEECCeEEe
Q 036355 118 KFLTMEISVKLEFENENDKMSLHYEK--LRVEIKAENVRIG 156 (255)
Q Consensus 118 ~~l~~~l~~tl~~~NPN~k~~i~Y~~--~~v~v~Y~g~~Lg 156 (255)
..+...-+.+|.++=|| |+.+.+.. .+..++|+|..+.
T Consensus 35 qklq~~~~~~v~v~RPd-klr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPD-KLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred ceEEEEEEEEEEEeCCC-eEEEEEEcCCcceEEEECCCEEE
Confidence 36788889999999999 69999953 6788999998875
No 105
>PF07509 DUF1523: Protein of unknown function (DUF1523); InterPro: IPR011088 This entry is represented by Bacteriophage phiNM3, A0EWY4 from SWISSPROT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are restricted to the Gammaproteobacteria and Epsilonproteobacteria, the function of these proteins is unknown.
Probab=24.00 E-value=4.3e+02 Score=22.31 Aligned_cols=21 Identities=0% Similarity=0.115 Sum_probs=15.2
Q ss_pred eeCCCEEEEeeEEEeeeeecC
Q 036355 93 RSSLPHINVLKVHSSNISISE 113 (255)
Q Consensus 93 rPk~P~f~V~s~~v~~f~~s~ 113 (255)
-|+.=...|++..+.+.+++.
T Consensus 25 lP~~dvvrItgtevkR~d~~~ 45 (175)
T PF07509_consen 25 LPQYDVVRITGTEVKRMDLDK 45 (175)
T ss_pred CCcceEEEEeceEEEEecCCc
Confidence 477777777888888776654
No 106
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=23.62 E-value=1.2e+02 Score=24.96 Aligned_cols=31 Identities=6% Similarity=0.151 Sum_probs=25.1
Q ss_pred EEEEEEEEEecCCCeeeEEEeCeEEEEEECCe
Q 036355 122 MEISVKLEFENENDKMSLHYEKLRVEIKAENV 153 (255)
Q Consensus 122 ~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~ 153 (255)
...++++-++|-- +-.+-+++.+++|.-+|.
T Consensus 68 g~~t~t~yiKNtG-~~~~~fd~~sitVliDG~ 98 (154)
T COG3354 68 GPYTYTFYIKNTG-SDSIAFDNTSITVLIDGN 98 (154)
T ss_pred CceEEEEEEecCC-CcccccCCCeEEEEEcCc
Confidence 4567888899988 578889998888888774
No 107
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.67 E-value=49 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=11.7
Q ss_pred HHHHHHHHhheeeeeeeC
Q 036355 78 LIIIFVLGFVAVGILRSS 95 (255)
Q Consensus 78 iil~~~a~li~~lv~rPk 95 (255)
++-++++++|+|.+|+-+
T Consensus 9 ~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 334456677888888753
No 108
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=22.57 E-value=3.6e+02 Score=20.74 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=8.2
Q ss_pred EEEEEEEecCCCe
Q 036355 124 ISVKLEFENENDK 136 (255)
Q Consensus 124 l~~tl~~~NPN~k 136 (255)
...++.+.|-|++
T Consensus 55 y~Y~~~~yd~~G~ 67 (114)
T TIGR01655 55 YEYKLDAYDSSGK 67 (114)
T ss_pred EEEEEEEECCCCC
Confidence 6666677666653
No 109
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=22.20 E-value=63 Score=19.31 Aligned_cols=17 Identities=18% Similarity=0.129 Sum_probs=6.6
Q ss_pred HHHHhheeeeeeeCCCE
Q 036355 82 FVLGFVAVGILRSSLPH 98 (255)
Q Consensus 82 ~~a~li~~lv~rPk~P~ 98 (255)
+.++++++.++--..|+
T Consensus 12 ~tlgiiFFAIfFRepPr 28 (31)
T PRK11875 12 LALVTLFFAIAFRDPPK 28 (31)
T ss_pred HHHHHHHHhhhccCCCC
Confidence 33444444333323344
No 110
>CHL00031 psbT photosystem II protein T
Probab=22.02 E-value=74 Score=19.31 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=6.8
Q ss_pred HHHHhheeeeeeeCCCE
Q 036355 82 FVLGFVAVGILRSSLPH 98 (255)
Q Consensus 82 ~~a~li~~lv~rPk~P~ 98 (255)
+.++++++.++--..|+
T Consensus 12 ~tlgilFFAI~FRePPr 28 (33)
T CHL00031 12 STLGIIFFAIFFREPPK 28 (33)
T ss_pred HHHHHHHHhheecCCCC
Confidence 33444444333333344
No 111
>PRK14758 hypothetical protein; Provisional
Probab=22.02 E-value=1e+02 Score=17.71 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=6.6
Q ss_pred HHHHHHHHHhheee
Q 036355 77 FLIIIFVLGFVAVG 90 (255)
Q Consensus 77 liil~~~a~li~~l 90 (255)
++++-+++++-+|+
T Consensus 13 vlIlCalia~~fy~ 26 (27)
T PRK14758 13 ILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHhcc
Confidence 33444455555553
No 112
>PF14055 NVEALA: NVEALA protein
Probab=21.95 E-value=41 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=16.2
Q ss_pred HHhheeeeeeeCCCEEEEeeEEEeee
Q 036355 84 LGFVAVGILRSSLPHINVLKVHSSNI 109 (255)
Q Consensus 84 a~li~~lv~rPk~P~f~V~s~~v~~f 109 (255)
++++.|-++..+.-+..+.++.+.+.
T Consensus 15 ~~~ag~~~~~~~~~~~~lsdL~L~NV 40 (65)
T PF14055_consen 15 AAVAGYNVYQSQNKEVNLSDLALANV 40 (65)
T ss_pred hhheeeeEEEeccCccccchHHHHhH
Confidence 45566777777665555666666543
No 113
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=21.88 E-value=1.9e+02 Score=22.37 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=29.2
Q ss_pred cCCCeeeEEEeC-eEEEEEECCeEEeeccCCCccccCCCe
Q 036355 132 NENDKMSLHYEK-LRVEIKAENVRIGHTAIPGFSQRSGNE 170 (255)
Q Consensus 132 NPN~k~~i~Y~~-~~v~v~Y~g~~Lg~~~vp~F~Q~~~nt 170 (255)
||| .+-+.|++ .++++.|+|..+--+.-..|.++.-.+
T Consensus 40 ~pN-Yvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~RDLgT 78 (121)
T PF06919_consen 40 TPN-YVFMRFENGITVSVTYNGSIFKIGLDDDHRERDLGT 78 (121)
T ss_pred CCC-EEEEEecCCCEEEEEecCcEEEEEecCchhhcccCC
Confidence 999 78999987 899999998877666666666654333
No 114
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.86 E-value=3.7e+02 Score=22.52 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=14.8
Q ss_pred eEeEEEEEEEEE-ecCCCeeeEEEeCeEEEEEECC
Q 036355 119 FLTMEISVKLEF-ENENDKMSLHYEKLRVEIKAEN 152 (255)
Q Consensus 119 ~l~~~l~~tl~~-~NPN~k~~i~Y~~~~v~v~Y~g 152 (255)
.++.++++.++- -|=|.|.-+-| +.+.|.+
T Consensus 65 ~i~fdl~aDls~lfnWNtKq~Fvy----v~A~Y~t 95 (175)
T PF04573_consen 65 KITFDLDADLSPLFNWNTKQLFVY----VTAEYET 95 (175)
T ss_pred EEEEEeccCcccceeeeeeEEEEE----EEEEECC
Confidence 444444444432 56666655444 4455654
No 115
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=21.85 E-value=3e+02 Score=19.43 Aligned_cols=24 Identities=13% Similarity=0.399 Sum_probs=12.1
Q ss_pred EEEecCCCeeeEEEeCeEEEEEECC
Q 036355 128 LEFENENDKMSLHYEKLRVEIKAEN 152 (255)
Q Consensus 128 l~~~NPN~k~~i~Y~~~~v~v~Y~g 152 (255)
+.++|--.. .+..+++.+.+.-+|
T Consensus 56 v~i~h~gGd-~l~~~~l~i~v~~~~ 79 (80)
T PF07790_consen 56 VTITHEGGD-PLDVDDLKIVVDGNG 79 (80)
T ss_pred EEEEEcCCC-CcccceEEEEEecCC
Confidence 555554443 455555555554443
No 116
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=21.74 E-value=3e+02 Score=19.41 Aligned_cols=53 Identities=13% Similarity=0.315 Sum_probs=31.0
Q ss_pred eEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCCCccccCCCeEEEEEEEE
Q 036355 121 TMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTT 178 (255)
Q Consensus 121 ~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp~F~Q~~~ntt~v~~~l~ 178 (255)
.-.+.+++.++|.-.. . -+...+.++.+|..++...++.+. ++.+..+.+.+.
T Consensus 18 g~~~~i~~~V~N~G~~-~--~~~~~v~~~~~~~~~~~~~i~~L~--~g~~~~v~~~~~ 70 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTA-D--AENVTVRLYLDGNSVSTVTIPSLA--PGESETVTFTWT 70 (101)
T ss_dssp TSEEEEEEEEEE-SSS----BEEEEEEEEETTEEEEEEEESEB---TTEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCC-C--CCCEEEEEEECCceeccEEECCcC--CCcEEEEEEEEE
Confidence 3457788889997532 2 334677777788888776665444 344444444443
No 117
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=21.73 E-value=52 Score=32.05 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=11.4
Q ss_pred CCccccccccC-CCCCCCCCccc
Q 036355 7 ASSSQQQHLQN-PNPPLPQHQHQ 28 (255)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~ 28 (255)
|+|.|-+.--. |+||||||++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (461)
T PLN03132 4 AFSTQAAATAATPQPPPPPPPPE 26 (461)
T ss_pred ccccccccccCCCCCcccCCCCc
Confidence 44444443333 66666666654
No 118
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=21.55 E-value=45 Score=25.37 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=8.0
Q ss_pred HHhheeeeeeeCC
Q 036355 84 LGFVAVGILRSSL 96 (255)
Q Consensus 84 a~li~~lv~rPk~ 96 (255)
.++.+++++||..
T Consensus 19 ~~ifyFli~RPQr 31 (97)
T COG1862 19 FAIFYFLIIRPQR 31 (97)
T ss_pred HHHHHHhhcCHHH
Confidence 3344555889964
No 119
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=21.29 E-value=3.9e+02 Score=21.33 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=35.7
Q ss_pred eEeEEEEEEEEEecCCCeeeEEEeCeEEEEEE--CCeEEeeccCCCccccCCCeEEEEE
Q 036355 119 FLTMEISVKLEFENENDKMSLHYEKLRVEIKA--ENVRIGHTAIPGFSQRSGNETKIDV 175 (255)
Q Consensus 119 ~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y--~g~~Lg~~~vp~F~Q~~~ntt~v~~ 175 (255)
....+|+++|++||.+.+-.++-.+.+ +| +|..+-+---.+.+.+|-.+..+-+
T Consensus 20 ~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 20 HRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred CceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 357889999999999887666544222 34 3666655544577777777766554
No 120
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.17 E-value=52 Score=21.97 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=10.7
Q ss_pred HHHHHHHHHhheeeeeeeCC
Q 036355 77 FLIIIFVLGFVAVGILRSSL 96 (255)
Q Consensus 77 liil~~~a~li~~lv~rPk~ 96 (255)
++++++++++.++-+++-+.
T Consensus 9 i~iv~~lLg~~I~~~~K~yg 28 (50)
T PF12606_consen 9 IFIVMGLLGLSICTTLKAYG 28 (50)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 33445566666665555443
No 121
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.12 E-value=32 Score=31.49 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHhheeeeee
Q 036355 82 FVLGFVAVGILR 93 (255)
Q Consensus 82 ~~a~li~~lv~r 93 (255)
.++++++|+.++
T Consensus 175 LFlaiLIWlY~H 186 (381)
T PF05297_consen 175 LFLAILIWLYVH 186 (381)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhc
Confidence 455666787766
No 122
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=44 Score=23.17 Aligned_cols=10 Identities=20% Similarity=-0.034 Sum_probs=6.5
Q ss_pred heeeeeeeCC
Q 036355 87 VAVGILRSSL 96 (255)
Q Consensus 87 i~~lv~rPk~ 96 (255)
++|.+|||++
T Consensus 25 vi~~ayr~~~ 34 (60)
T COG4736 25 VIYFAYRPGK 34 (60)
T ss_pred HHHHHhcccc
Confidence 3456789964
No 123
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.71 E-value=54 Score=28.66 Aligned_cols=7 Identities=0% Similarity=-0.211 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 036355 190 EILKLRY 196 (255)
Q Consensus 190 ~~L~~d~ 196 (255)
.+|.+.+
T Consensus 153 ~Em~~Ai 159 (217)
T PF07423_consen 153 NEMLKAI 159 (217)
T ss_pred HHHHHHH
Confidence 3444433
No 124
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=20.62 E-value=92 Score=30.49 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=5.8
Q ss_pred CCCCcccchhhH
Q 036355 56 KGHRSCRCFTCC 67 (255)
Q Consensus 56 ~~~~~~~c~~cc 67 (255)
|+++++||..||
T Consensus 78 ~~~~~~~c~s~~ 89 (526)
T KOG4433|consen 78 RKRRRVRCLSWS 89 (526)
T ss_pred CCCCCcceeeeh
Confidence 444456554443
No 125
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=20.55 E-value=1e+02 Score=18.82 Aligned_cols=20 Identities=30% Similarity=0.735 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhe
Q 036355 69 WICISVTAFLIIIFVLGFVA 88 (255)
Q Consensus 69 ~~~~~i~~liil~~~a~li~ 88 (255)
|+-+++.++++++++.|.+.
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 55555555666666666654
No 126
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=20.38 E-value=1.3e+02 Score=28.98 Aligned_cols=6 Identities=17% Similarity=0.157 Sum_probs=3.1
Q ss_pred cccchh
Q 036355 60 SCRCFT 65 (255)
Q Consensus 60 ~~~c~~ 65 (255)
+|||+.
T Consensus 64 ~CCcr~ 69 (418)
T cd07912 64 RCCDRK 69 (418)
T ss_pred hccCCC
Confidence 455554
No 127
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.38 E-value=1.4e+02 Score=29.45 Aligned_cols=16 Identities=13% Similarity=0.220 Sum_probs=9.7
Q ss_pred HHHHHHHhheeeeeee
Q 036355 79 IIIFVLGFVAVGILRS 94 (255)
Q Consensus 79 il~~~a~li~~lv~rP 94 (255)
++++++++++|.-.+.
T Consensus 410 ~~~~~~~l~vw~c~~~ 425 (542)
T PHA03283 410 CAALLVALVVWGCILY 425 (542)
T ss_pred HHHHHHHHhhhheeee
Confidence 3355666777776663
No 128
>PHA03093 EEV glycoprotein; Provisional
Probab=20.12 E-value=99 Score=26.30 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=13.1
Q ss_pred EEEecCCCeeeEEEeCeEEEEEECC
Q 036355 128 LEFENENDKMSLHYEKLRVEIKAEN 152 (255)
Q Consensus 128 l~~~NPN~k~~i~Y~~~~v~v~Y~g 152 (255)
-...|.+= -||.|+..-..+.++.
T Consensus 94 ~~~~~~~C-~GI~~~~~C~~~~~ep 117 (185)
T PHA03093 94 QYKHKESC-KGIVYDGSCYIFHSEP 117 (185)
T ss_pred cccccCcC-CCeecCCEeEEecCCC
Confidence 33445552 4777776555555543
No 129
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.02 E-value=1.4e+02 Score=22.90 Aligned_cols=13 Identities=0% Similarity=0.048 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhe
Q 036355 76 AFLIIIFVLGFVA 88 (255)
Q Consensus 76 ~liil~~~a~li~ 88 (255)
.+++.+|+.+.++
T Consensus 27 sVvvavGl~aGLf 39 (106)
T PF14654_consen 27 SVVVAVGLFAGLF 39 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
Done!