Query 036355
Match_columns 255
No_of_seqs 156 out of 818
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 20:25:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.2 4.8E-06 1.6E-10 68.9 9.4 101 95-209 43-145 (174)
2 3but_A Uncharacterized protein 98.0 0.00014 4.7E-09 57.8 13.7 72 121-193 17-89 (136)
3 1xo8_A AT1G01470; structural g 98.0 5.4E-06 1.8E-10 67.1 5.3 101 95-209 20-122 (151)
4 2rqw_B 24-meric peptide from s 73.8 2.3 8E-05 23.4 2.2 21 10-30 2-22 (26)
5 3ukx_C Bimax2 peptide; arm rep 66.8 4.4 0.00015 22.1 2.3 9 52-60 18-26 (28)
6 3j1r_A Archaeal adhesion filam 58.4 3.9 0.00013 22.5 1.1 15 77-91 10-24 (26)
7 3lph_A Protein REV; helix-loop 54.4 1.7 5.7E-05 30.1 -1.0 19 14-32 23-41 (72)
8 1wlp_A Cytochrome B-245 light 45.8 6.3 0.00022 21.7 0.7 16 17-32 8-23 (26)
9 2x7l_M HIV REV; nuclear export 43.0 4.3 0.00015 30.6 -0.4 20 14-33 20-39 (115)
10 4hw8_A Bacterial extracellular 38.3 6.7 0.00023 34.9 0.0 6 43-48 4-9 (420)
11 2kxc_B ESPF-like protein; IRTK 29.6 22 0.00077 22.5 1.4 14 18-31 32-45 (48)
12 2yev_C CAA3-type cytochrome ox 33.6 13 0.00044 24.9 0.0 30 76-105 6-35 (66)
13 1afo_A Glycophorin A; integral 27.5 21 0.00072 21.6 1.0 17 74-90 14-30 (40)
14 2l6w_A Beta-type platelet-deri 32.8 14 0.00046 22.5 0.0 17 84-100 23-39 (39)
15 2knc_B Integrin beta-3; transm 22.6 59 0.002 22.6 2.7 13 77-89 20-32 (79)
16 2rdd_B UPF0092 membrane protei 22.4 14 0.00047 22.0 -0.6 9 87-95 16-24 (37)
17 3arc_T Photosystem II reaction 20.7 26 0.00087 20.3 0.4 13 86-98 16-28 (32)
18 1nrp_R Receptor based peptide 20.5 17 0.00058 19.5 -0.4 15 128-142 6-20 (26)
19 3vmt_A Monofunctional glycosyl 20.4 80 0.0027 27.2 3.6 7 68-74 38-44 (263)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.24 E-value=4.8e-06 Score=68.93 Aligned_cols=101 Identities=17% Similarity=0.104 Sum_probs=78.8
Q ss_pred CCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCC-CccccCCCeEEE
Q 036355 95 SLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIP-GFSQRSGNETKI 173 (255)
Q Consensus 95 k~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp-~F~Q~~~ntt~v 173 (255)
+.|+++++++.+.+++. ...+|.+.++++|||. ..+-+..++.++.-+|..|+++..+ ++..++.+++.+
T Consensus 43 ~~PeV~v~~v~~~~~~l--------~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v 113 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTR--------DGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVL 113 (174)
T ss_dssp CCCEEEEEEEEEEEECS--------SSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEE
T ss_pred CCCEEEEEEeEEecccc--------ceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEE
Confidence 77999999999987653 2577999999999995 9999999999999999999999887 588899999999
Q ss_pred EEEEEEeeeecChHHHHHHHHHhcCc-eEEEEEEEEE
Q 036355 174 DVNTTTTNTRIDDANAEILKLRYRQK-AMLVDLFMTG 209 (255)
Q Consensus 174 ~~~l~~~~~~v~~~~~~~L~~d~~~g-~v~l~v~v~~ 209 (255)
.+.++... .....+..++..+ .++.++++..
T Consensus 114 ~Vpv~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L 145 (174)
T 1yyc_A 114 DVPVKVAY-----SIAVSLMKDMCTDWDIDYQLDIGL 145 (174)
T ss_dssp EEEEEESH-----HHHHHTCCCCCSSEEECEEEEEEE
T ss_pred EEEEEEEH-----HHHHHHHHhcCCCCccceEEEEEE
Confidence 99887652 2223333455443 4666664433
No 2
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.04 E-value=0.00014 Score=57.82 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=62.2
Q ss_pred eEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeecc-CCCccccCCCeEEEEEEEEEeeeecChHHHHHHH
Q 036355 121 TMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTA-IPGFSQRSGNETKIDVNTTTTNTRIDDANAEILK 193 (255)
Q Consensus 121 ~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~-vp~F~Q~~~ntt~v~~~l~~~~~~v~~~~~~~L~ 193 (255)
.+.|.+.+.+.||| .+.+.++.++..+..+|..||++. ...+..++.+++.+.+.+..+...+.+.....++
T Consensus 17 ~t~~~~~l~V~NPN-~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ 89 (136)
T 3but_A 17 QTEIVALAKVRNED-VVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA 89 (136)
T ss_dssp EEEEEEEEEEECCS-SSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred EEEEEEEEEEeCCC-CcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence 78899999999999 599999999999999999999887 5689999999999999999887666555555554
No 3
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.02 E-value=5.4e-06 Score=67.10 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=77.4
Q ss_pred CCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCC-CccccCCCeEEE
Q 036355 95 SLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIP-GFSQRSGNETKI 173 (255)
Q Consensus 95 k~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp-~F~Q~~~ntt~v 173 (255)
+.|+++++++.+.+++. ...++.+.++++|||. ..+.+..++.++.-+|..++++..+ ++..++++++.+
T Consensus 20 ~~P~v~v~~v~~~~~~~--------~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v 90 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR--------DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTAL 90 (151)
T ss_dssp CSCCCBCSEEEECCCTT--------TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEE
T ss_pred CCCEEEEEEeEEeccCc--------ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEE
Confidence 67999999998876542 3567999999999995 8999999999999999999999887 688899999999
Q ss_pred EEEEEEeeeecChHHHHHHHHHhc-CceEEEEEEEEE
Q 036355 174 DVNTTTTNTRIDDANAEILKLRYR-QKAMLVDLFMTG 209 (255)
Q Consensus 174 ~~~l~~~~~~v~~~~~~~L~~d~~-~g~v~l~v~v~~ 209 (255)
.+.++.... ...++..++. .+.++.+++++.
T Consensus 91 ~vpv~v~~~-----~l~~~~~~l~~~~~i~Y~l~g~l 122 (151)
T 1xo8_A 91 DIPVVVPYS-----ILFNLARDVGVDWDIDYELQIGL 122 (151)
T ss_dssp EECCCEEHH-----HHHHHHHHHHHHSEEEEEEEEEE
T ss_pred EEEEEEEHH-----HHHHHHHhcccCCcccEEEEEEE
Confidence 988776532 2233334433 345666665444
No 4
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=73.77 E-value=2.3 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=15.2
Q ss_pred cccccccCCCCCCCCCccccc
Q 036355 10 SQQQHLQNPNPPLPQHQHQQQ 30 (255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (255)
++-.+-+.|+||+|.||.+..
T Consensus 2 ~~~~eKFiPsRPAPKPP~s~t 22 (26)
T 2rqw_B 2 SSANGKFIPSRPAPKPPSSAS 22 (26)
T ss_dssp CCCCCSSCCSSCCCCCSSCSC
T ss_pred cccccccccCCCCCCCCCCCc
Confidence 344556889999999986543
No 5
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=66.85 E-value=4.4 Score=22.13 Aligned_cols=9 Identities=33% Similarity=0.398 Sum_probs=4.9
Q ss_pred CCCCCCCCc
Q 036355 52 DPNSKGHRS 60 (255)
Q Consensus 52 ~~~~~~~~~ 60 (255)
++.+|++|+
T Consensus 18 ddppkkrrr 26 (28)
T 3ukx_C 18 DDPPKKRRR 26 (28)
T ss_dssp SSCCSCCCC
T ss_pred CCchhhhhc
Confidence 455666553
No 6
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=58.43 E-value=3.9 Score=22.50 Aligned_cols=15 Identities=7% Similarity=0.157 Sum_probs=6.8
Q ss_pred HHHHHHHHHhheeee
Q 036355 77 FLIIIFVLGFVAVGI 91 (255)
Q Consensus 77 liil~~~a~li~~lv 91 (255)
+++++.+++.++|+.
T Consensus 10 LIviav~aaVllylW 24 (26)
T 3j1r_A 10 LILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444455543
No 7
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=54.43 E-value=1.7 Score=30.14 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=13.8
Q ss_pred cccCCCCCCCCCccccccc
Q 036355 14 HLQNPNPPLPQHQHQQQRT 32 (255)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (255)
.||.+||+|.|..|.|.++
T Consensus 23 iLyQSNP~P~p~GTrqaRR 41 (72)
T 3lph_A 23 FLYQSNPPPNPEGTRQARR 41 (72)
T ss_dssp HHHHTCCCCCCCSCHHHHH
T ss_pred HHHccCCCCCCCCchHHHH
Confidence 4799999888877755443
No 8
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=45.83 E-value=6.3 Score=21.70 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=9.9
Q ss_pred CCCCCCCCCccccccc
Q 036355 17 NPNPPLPQHQHQQQRT 32 (255)
Q Consensus 17 ~~~~~~~~~~~~~~~~ 32 (255)
.|+-|+|||+...|+-
T Consensus 8 pP~nPPPRpPae~r~k 23 (26)
T 1wlp_A 8 PPSNPPPRPPAEARKK 23 (26)
T ss_dssp CCSSCCCCCCHHHHHC
T ss_pred CCCCcCCCCchHHccc
Confidence 3556677777666553
No 9
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=43.05 E-value=4.3 Score=30.59 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=14.4
Q ss_pred cccCCCCCCCCCcccccccc
Q 036355 14 HLQNPNPPLPQHQHQQQRTK 33 (255)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (255)
-||..||+|.+..+.|.|++
T Consensus 20 iLyQSNPyP~peGTRqaRRN 39 (115)
T 2x7l_M 20 FLYQSNPPPNPEGTRQARRN 39 (115)
T ss_dssp HHHHSSCCCCCCCCTTTHHH
T ss_pred HHHccCCCCCCCCchhhhHh
Confidence 47888988888777665543
No 10
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=38.31 E-value=6.7 Score=34.91 Aligned_cols=6 Identities=0% Similarity=-0.147 Sum_probs=0.0
Q ss_pred cccccc
Q 036355 43 KRTMYE 48 (255)
Q Consensus 43 ~~~~~~ 48 (255)
-+|||+
T Consensus 4 ~~~~~~ 9 (420)
T 4hw8_A 4 SHHHHH 9 (420)
T ss_dssp ------
T ss_pred cccccc
Confidence 334433
No 11
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=29.55 E-value=22 Score=22.46 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=6.9
Q ss_pred CCCCCCCCcccccc
Q 036355 18 PNPPLPQHQHQQQR 31 (255)
Q Consensus 18 ~~~~~~~~~~~~~~ 31 (255)
|++|+|+|+.+...
T Consensus 32 Pa~P~Pt~~~~~~~ 45 (48)
T 2kxc_B 32 PNWPAPTPPVQNEQ 45 (48)
T ss_pred CCCCCCCCcccccc
Confidence 45555555544433
No 12
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=33.56 E-value=13 Score=24.89 Aligned_cols=30 Identities=10% Similarity=-0.008 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhheeeeeeeCCCEEEEeeEE
Q 036355 76 AFLIIIFVLGFVAVGILRSSLPHINVLKVH 105 (255)
Q Consensus 76 ~liil~~~a~li~~lv~rPk~P~f~V~s~~ 105 (255)
++.+.+.+...++|++++|+.-...=+++.
T Consensus 6 lF~iGa~lVt~~~Yl~lnPR~late~e~~D 35 (66)
T 2yev_C 6 LFALGAALVTLFFYLILNPRVLTTEGETFD 35 (66)
Confidence 345566677788999999986654444443
No 13
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.48 E-value=21 Score=21.65 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhheee
Q 036355 74 VTAFLIIIFVLGFVAVG 90 (255)
Q Consensus 74 i~~liil~~~a~li~~l 90 (255)
++++.+++|+++.++++
T Consensus 14 lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566666666543
No 14
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=32.77 E-value=14 Score=22.50 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=9.8
Q ss_pred HHhheeeeeeeCCCEEE
Q 036355 84 LGFVAVGILRSSLPHIN 100 (255)
Q Consensus 84 a~li~~lv~rPk~P~f~ 100 (255)
..+|+.++.+=++|+|.
T Consensus 23 isLIiLi~~w~qKPrYe 39 (39)
T 2l6w_A 23 ISLIILIMLWQKKPRYE 39 (39)
Confidence 33444455566888763
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.59 E-value=59 Score=22.63 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhee
Q 036355 77 FLIIIFVLGFVAV 89 (255)
Q Consensus 77 liil~~~a~li~~ 89 (255)
.++++|++.+++|
T Consensus 20 gilliGllllliw 32 (79)
T 2knc_B 20 AILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555555
No 16
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=22.37 E-value=14 Score=21.99 Aligned_cols=9 Identities=33% Similarity=0.290 Sum_probs=5.5
Q ss_pred heeeeeeeC
Q 036355 87 VAVGILRSS 95 (255)
Q Consensus 87 i~~lv~rPk 95 (255)
.+++++||.
T Consensus 16 fYFl~iRPQ 24 (37)
T 2rdd_B 16 FYFMILRPQ 24 (37)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHhhhH
Confidence 445667874
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=20.72 E-value=26 Score=20.35 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=4.8
Q ss_pred hheeeeeeeCCCE
Q 036355 86 FVAVGILRSSLPH 98 (255)
Q Consensus 86 li~~lv~rPk~P~ 98 (255)
++++.++-...|+
T Consensus 16 iiFFAI~FRePPr 28 (32)
T 3arc_T 16 LFFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHhhhhcCCCC
Confidence 3333333333344
No 18
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=20.50 E-value=17 Score=19.46 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=10.0
Q ss_pred EEEecCCCeeeEEEe
Q 036355 128 LEFENENDKMSLHYE 142 (255)
Q Consensus 128 l~~~NPN~k~~i~Y~ 142 (255)
+..+|||+|..-.++
T Consensus 6 fllrnpndkyepfwe 20 (26)
T 1nrp_R 6 FLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhcCCCcccCcccc
Confidence 346899988654443
No 19
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=20.37 E-value=80 Score=27.17 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 036355 68 AWICISV 74 (255)
Q Consensus 68 ~~~~~~i 74 (255)
.|+++++
T Consensus 38 ~~~~~~~ 44 (263)
T 3vmt_A 38 LKILLTI 44 (263)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 3444333
Done!