BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036356
(462 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 165/423 (39%), Positives = 213/423 (50%), Gaps = 120/423 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------------KW 160
+P+V L NA+I GY+ + + +A++++ K
Sbjct: 131 EPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKR 190
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---- 216
+ I + + ++V V L+ +YAKCG V+ A + F+ D+++V ++MI GYG
Sbjct: 191 VHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGL 250
Query: 217 -LHEWSAFGSFDGLLSNEENEY---GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
+ FG N + ++ + L D+E LEQGK +HG ++K+GLE E DLL
Sbjct: 251 PMEALRIFGQMRQ--RNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLL 308
Query: 273 ISLTA---------VCRY------QPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
ISLTA V R PNV +WNAMISGYAKNGY EAV LF
Sbjct: 309 ISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIR 368
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
KWM YI K+EYRN+V VNT LIDM+AKCGSVDLA
Sbjct: 369 TDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREV 428
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLG----------------------------------- 372
FDRTLDKDVV+ SAM VGYGLHG G
Sbjct: 429 FDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLV 488
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
EEGW LFH ++ +GIE RHQHYA VVDLL R+G+ N A+ FI MPIE +SV ALL A
Sbjct: 489 EEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGA 548
Query: 433 WKI 435
KI
Sbjct: 549 CKI 551
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 154/299 (51%), Gaps = 89/299 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LVCY------ 45
MQ + V P+G T P VLKAC +P L +G RVHGQIF LGF LV
Sbjct: 160 MQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGR 219
Query: 46 ------LFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG------------ 87
+F+GL DR IV W+ + S +G +GL +G
Sbjct: 220 VEQARIVFEGLDDRNIV------SWT-SMISGYGQ-NGLPMEALRIFGQMRQRNVKPDWI 271
Query: 88 ---TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCRY----- 130
+ L D+E LEQGK +HG ++K+GLE E DLLISLTA V R
Sbjct: 272 ALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQM 331
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLF------------------------------PK 159
PNV + NAMISGYAKNGY EAV LF K
Sbjct: 332 EIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAK 391
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
WM YI K+EYRN+V VNT LIDM+AKCGSVDLA FDRTLDKDVV+ SAMIVGYGLH
Sbjct: 392 WMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLH 450
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 115/264 (43%), Gaps = 55/264 (20%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEEN 235
T ++ G + A FD + V + +A+I GY H + A + + ++ N
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166
Query: 236 EYGTALDC---SCD-LEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-RYQP---- 283
G L C +C + LE GK VHG + +LG E + + L++L A C R +
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIV 226
Query: 284 -------NVTLWNAMISGYAKNGYAEEAVKLF---------PKWM-------------DY 314
N+ W +MISGY +NG EA+++F P W+ D
Sbjct: 227 FEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDL 286
Query: 315 YIGKS----------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
GKS E+ +++++ L MYAKCG V +A FFD+ +V+M +AM
Sbjct: 287 EQGKSIHGCVVKMGLEFEPDLLIS--LTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMIS 344
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIE 388
GY +G E LF + I
Sbjct: 345 GYAKNGYTNEAVGLFQEMISKNIR 368
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 161/420 (38%), Positives = 213/420 (50%), Gaps = 116/420 (27%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKL---------------FP---------------KWM 161
P+V L NA++ Y+++G+ A+++ FP + +
Sbjct: 136 PDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRV 195
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--E 219
I + + ++V V L+ +YAKCG + A F R +D+ +V +++I GY +
Sbjct: 196 HGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQP 255
Query: 220 WSAFGSFDGLL-SNEENEY---GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
A F + +N ++ + L D+E LE GK +HG +IK+GLE E DLLISL
Sbjct: 256 IEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISL 315
Query: 276 T---AVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF------------ 308
T A C + P++ WNAMISGY KNGYAEEA++LF
Sbjct: 316 TSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDS 375
Query: 309 ------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+WMD YI SE+RN+VIVNT LID YAKCGSVD+A FDR
Sbjct: 376 ITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDR 435
Query: 351 TLDKDVVMRSAMTVGYGLHGLG-----------------------------------EEG 375
DKDVV+ SAM VGYGLHG G EEG
Sbjct: 436 IPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEG 495
Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
W LFH +R +GIEPRHQHYA VVDLL RAG+ + A+ F+MNMPIE +SV ALLSA KI
Sbjct: 496 WDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKI 555
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 150/305 (49%), Gaps = 101/305 (33%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LVCY------ 45
MQVA V+P+G + P VLKAC ALP+L MG RVHGQIF GF LV
Sbjct: 164 MQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGE 223
Query: 46 ------LFDGLFDRTIV---------------------FLDLYHLWSRTEWSAFGSFDGL 78
+F L DRTIV F ++ R +W A S
Sbjct: 224 IVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVS---- 279
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVCRY----- 130
L D+E LE GK +HG +IK+GLE E DLLISLT A C +
Sbjct: 280 ----------VLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVAR 329
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLF-------------------------- 157
P++ NAMISGY KNGYAEEA++LF
Sbjct: 330 LFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIG 389
Query: 158 ----PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+WMD YI SE+RN+VIVNT LID YAKCGSVD+A FDR DKDVV+ SAM+V
Sbjct: 390 SLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMV 449
Query: 214 GYGLH 218
GYGLH
Sbjct: 450 GYGLH 454
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 113/265 (42%), Gaps = 59/265 (22%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL--------LS 231
L++ + G V A FD+ D DV + +A++ Y H + FG + +S
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF--FGHAIEMYARMQVACVS 170
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC--------- 279
+ + L L LE G+ VHG + + G E + + L++L A C
Sbjct: 171 PDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAV 230
Query: 280 ---RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWM-------------DY 314
+ W ++ISGYA+NG EA+++F P W+ D
Sbjct: 231 FGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDL 290
Query: 315 YIGKS----------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
GKS E +++++ L +YAKCG V +A +FF++ + ++ +AM
Sbjct: 291 EHGKSIHGCVIKMGLECEFDLLIS--LTSLYAKCGHVMVARLFFNQVENPSLIFWNAMIS 348
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEP 389
GY +G EE LF ++ I P
Sbjct: 349 GYVKNGYAEEAIELFRLMKSKNIRP 373
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 203/421 (48%), Gaps = 116/421 (27%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKS 168
+P++ L NA+I GY + + ++++ P + IGK
Sbjct: 62 EPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ 121
Query: 169 --------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-- 218
+ +NV V L+ MYAK G + A + FD+ D+ VV +++I GY +
Sbjct: 122 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 181
Query: 219 EWSAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
A F + AL ++E L QGK +HG + KLGLE E D++IS
Sbjct: 182 PMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS 241
Query: 275 LTA---------VCRY------QPNVTLWNAMISGYAKNGYAEEAVKLF----------- 308
LT V R+ +PN+ LWNAMISGYA NGY EEA+KLF
Sbjct: 242 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVD 301
Query: 309 -------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+W+D YI KSEYR++ VNT LIDMYAKCGS+ LA FD
Sbjct: 302 SITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFD 361
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEE----------------------------------- 374
R DKDVV+ S M +GYGLHG G+E
Sbjct: 362 RVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKE 421
Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
GW LFH + HGIEP HQHY+ VVDLL RAGY N A+ FIM+MPI+ +SV ALLSA K
Sbjct: 422 GWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACK 481
Query: 435 I 435
I
Sbjct: 482 I 482
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 150/337 (44%), Gaps = 107/337 (31%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------L 42
MQ++ V PN T VLKAC +G ++HGQ F GF
Sbjct: 91 MQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQ 150
Query: 43 VCY---LFDGLFDRTI---------------------VFLDLYHLWSRTEWSAFGSFDGL 78
+ Y +FD L DRT+ VF ++ + +W A S
Sbjct: 151 ISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA 210
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCR 129
+N E+ L QGK +HG + KLGLE E D++ISLT V R
Sbjct: 211 YTNVED--------------LGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVAR 256
Query: 130 Y------QPNVTLRNAMISGYAKNGYAEEAVKLF-------------------------- 157
+ +PN+ L NAMISGYA NGY EEA+KLF
Sbjct: 257 FFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG 316
Query: 158 ----PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+W+D YI KSEYR++ VNT LIDMYAKCGS+ LA FDR DKDVV+ S MI+
Sbjct: 317 SLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIM 376
Query: 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
GYGLH G L NE + G C D F+
Sbjct: 377 GYGLH---GHGQEAICLYNEMKQAGV---CPNDGTFI 407
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 207/421 (49%), Gaps = 116/421 (27%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKS 168
+P++ L NA+I GY + + ++++ P + IGK
Sbjct: 47 EPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ 106
Query: 169 --------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-- 218
+ +NV V L+ MYAK G + A + FD+ D+ VV +++I GY +
Sbjct: 107 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 166
Query: 219 EWSAFGSFDGLLS-NEENEY---GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
A F + N + ++ + + ++E L QGK +HG + KLGLE E D++IS
Sbjct: 167 PMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS 226
Query: 275 LTA---------VCRY------QPNVTLWNAMISGYAKNGYAEEAVKLF----------- 308
LT V R+ +PN+ LWNAMISGYA NGY EEA+KLF
Sbjct: 227 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVD 286
Query: 309 -------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+W+D YI KSEYR++ VNT LIDMYAKCGS+ LA FD
Sbjct: 287 SITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFD 346
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEE----------------------------------- 374
R DKDVV+ S M +GYGLHG G+E
Sbjct: 347 RVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKE 406
Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
GW LFH + HGIEP HQHY+ VVDLL RAGY N A+ FIM+MPI+ +SV ALLSA K
Sbjct: 407 GWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACK 466
Query: 435 I 435
I
Sbjct: 467 I 467
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 150/337 (44%), Gaps = 107/337 (31%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------L 42
MQ++ V PN T VLKAC +G ++HGQ F GF
Sbjct: 76 MQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQ 135
Query: 43 VCY---LFDGLFDRTI---------------------VFLDLYHLWSRTEWSAFGSFDGL 78
+ Y +FD L DRT+ VF ++ + +W A S
Sbjct: 136 ISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTA 195
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCR 129
+N E+ L QGK +HG + KLGLE E D++ISLT V R
Sbjct: 196 YTNVED--------------LGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVAR 241
Query: 130 Y------QPNVTLRNAMISGYAKNGYAEEAVKLF-------------------------- 157
+ +PN+ L NAMISGYA NGY EEA+KLF
Sbjct: 242 FFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG 301
Query: 158 ----PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+W+D YI KSEYR++ VNT LIDMYAKCGS+ LA FDR DKDVV+ S MI+
Sbjct: 302 SLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIM 361
Query: 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
GYGLH G L NE + G C D F+
Sbjct: 362 GYGLH---GHGQEAICLYNEMKQAGV---CPNDGTFI 392
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 164/487 (33%), Positives = 227/487 (46%), Gaps = 136/487 (27%)
Query: 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-------AVCRYQ-- 131
N ++ Y + +D S L+Q +H ++ GL+ L+ L +C +
Sbjct: 54 NSDSFYASLIDNSTHKRHLDQ---IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKL 110
Query: 132 ------PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY---------------------- 163
P+V + NA+I Y++N + V+++ +WM +
Sbjct: 111 FDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMY-RWMRWTGVHPDGFTFPYVLKACTELLD 169
Query: 164 ---------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
I K + ++V V L+ +YAKCG + +A + FD + +V +++I G
Sbjct: 170 FGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISG 229
Query: 215 YGLHEWS--AFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELE 268
Y + + A F + +N AL D++ LEQG+ +HGF+IK+GLE E
Sbjct: 230 YAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDE 289
Query: 269 SDLLISLTAV---C------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF----- 308
LLISLTA C NV +WNAMISGYAKNG+AEEAV LF
Sbjct: 290 PALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMIS 349
Query: 309 -------------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+WMD Y+ KS Y +++ VNT LIDMYAKCGSV+
Sbjct: 350 RNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEF 409
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------------- 372
A FDR DKDVVM SAM +GYGLHG G
Sbjct: 410 ARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNH 469
Query: 373 ----EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRA 428
+EGW LFH ++ I PR++HY+ VVDLL RAGY A FIM +PIE +SV A
Sbjct: 470 SGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGA 529
Query: 429 LLSAWKI 435
LLSA KI
Sbjct: 530 LLSACKI 536
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 148/484 (30%), Positives = 220/484 (45%), Gaps = 140/484 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-AVCRY-------------- 130
Y + +D S L Q +H ++ LGL+ L+ L A Y
Sbjct: 24 YASLIDSSTHKAQLRQ---IHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLP 80
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPK--------------------------WMDYY 164
+P V NA+I GY++N + ++A+ ++ K M +
Sbjct: 81 RPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRF 140
Query: 165 IGKSEYR----NNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYG-- 216
+ +R +V V LI +YAKC + A F+ ++ +V +A++ Y
Sbjct: 141 VHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQN 200
Query: 217 ------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
L +S D + + + L+ L+ LEQG+ +H ++K+GLE E D
Sbjct: 201 GEPVEALEIFSQMRKMD--VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPD 258
Query: 271 LLISLT---AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
LLISL A C PN+ LWNAMISGYAKNG+A++A+ LF
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD 318
Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+WMD Y+ +S+YR++V +++ LIDM+AKCGSV+ A
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECAR 378
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG------------------------LG--------- 372
FDRTLD+DVV+ SAM VGYGLHG LG
Sbjct: 379 SVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSG 438
Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
EGW F+ + H I P+ QHYA ++DLL RAG+ + A++ I MP++ ++V ALL
Sbjct: 439 MVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498
Query: 431 SAWK 434
SA K
Sbjct: 499 SACK 502
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 185/411 (45%), Gaps = 121/411 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------- 41
MQ+A V+P+ T P +LKAC L L MG VH Q+F LGF
Sbjct: 110 MQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRR 169
Query: 42 LVC--YLFDG--LFDRTIVFLDLYHLWSRTEWSAFGS--------FDGL-LSNEENEYGT 88
L C +F+G L +RTIV W+A S + L + ++ +
Sbjct: 170 LGCARTVFEGLPLPERTIV-----------SWTAIVSAYAQNGEPVEALEIFSQMRKMDV 218
Query: 89 ALDC----------SCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC------- 128
DC +C L+ LEQG+ +H ++K+GLE E DLLISL A C
Sbjct: 219 KPDCVALVSVLNAFTC-LQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAK 277
Query: 129 -----RYQPNVTLRNAMISGYAKNGYAEEAVKLF-------------------------- 157
PN+ L NAMISGYAKNG+A++A+ LF
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVG 337
Query: 158 ----PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+WMD Y+ +S+YR++V +++ LIDM+AKCGSV+ A FDRTLD+DVV+ SAMIV
Sbjct: 338 SLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIV 397
Query: 214 GYGLHEWSAFG-------SFDGLLSNEENEYGTALDCS---------------CDLEFLE 251
GYGLH + DG+ N+ G + C+ D +
Sbjct: 398 GYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINP 457
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
Q + + LG D + QP VT+W A++S K+ + E
Sbjct: 458 QQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 145/484 (29%), Positives = 218/484 (45%), Gaps = 140/484 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
Y + +D + L+Q +H ++ LGL+ L+ L
Sbjct: 24 YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FPKWMDYYIGKSE------ 169
+P + NA+I GY++N + ++A+ + FP + G S
Sbjct: 81 RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140
Query: 170 ---------YRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYG-- 216
+ +V V LI +YAKC + A F+ ++ +V +A++ Y
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200
Query: 217 ------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
L +S D + + + L+ L+ L+QG+ +H ++K+GLE+E D
Sbjct: 201 GEPMEALEIFSQMRKMD--VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258
Query: 271 LLISLT---AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
LLISL A C PN+ LWNAMISGYAKNGYA EA+ +F
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD 318
Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+ M Y+G+S+YR++V +++ LIDM+AKCGSV+ A
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR 378
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG------------------------LG--------- 372
+ FDRTLD+DVV+ SAM VGYGLHG LG
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSG 438
Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
EGW F+ + H I P+ QHYA V+DLL RAG+ + A++ I MP++ ++V ALL
Sbjct: 439 MVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498
Query: 431 SAWK 434
SA K
Sbjct: 499 SACK 502
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 183/413 (44%), Gaps = 125/413 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY----- 45
MQ+A V+P+ T P +LKAC L L MG VH Q+F LGF + Y
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169
Query: 46 ------LFDG--LFDRTIV---------------------FLDLYHLWSRTEWSAFGSFD 76
+F+G L +RTIV F + + + +W A S
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVS-- 227
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC----- 128
L+ L+ L+QG+ +H ++K+GLE+E DLLISL A C
Sbjct: 228 ------------VLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275
Query: 129 -------RYQPNVTLRNAMISGYAKNGYAEEAVKLF------------------------ 157
PN+ L NAMISGYAKNGYA EA+ +F
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335
Query: 158 ------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
+ M Y+G+S+YR++V +++ LIDM+AKCGSV+ A + FDRTLD+DVV+ SAM
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395
Query: 212 IVGYGLH-----EWSAFGSFD--GLLSNEENEYGTALDCS---------------CDLEF 249
IVGYGLH S + + + G+ N+ G + C+ D +
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKI 455
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
Q + + LG D + QP VT+W A++S K+ + E
Sbjct: 456 NPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/266 (41%), Positives = 148/266 (55%), Gaps = 51/266 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL- 229
+V V L+ YAKC + LA + F R D+ +V +++I GY + A F+ +
Sbjct: 179 DVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQNGQPIEALRIFNQMR 238
Query: 230 ---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQ- 282
+ ++ + L D+E LE GK +HG +IK+GLE E DLLISLTA+ C
Sbjct: 239 EVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEIDLLISLTAMYAKCGQVM 298
Query: 283 -----------PNVTLWNAMISGYAKNGYAEEAVKLF----------------------- 308
PN+ LWNAMISGYAKNGYAEEA++LF
Sbjct: 299 FARLFFDQVRIPNLILWNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILACA 358
Query: 309 -------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
+WM YIG+SE+RN+ V++ LIDM++KCGSVDLA FDR LDKDVV+ S+
Sbjct: 359 QMGSLELARWMSDYIGRSEFRNDAFVSSALIDMFSKCGSVDLARDVFDRALDKDVVLWSS 418
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGI 387
M +GYGLHG G+E LF +R+ GI
Sbjct: 419 MIMGYGLHGRGQESINLFEAMRQAGI 444
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 153/292 (52%), Gaps = 74/292 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVA-LPSLLMGPRVHGQIFSLGF------------------ 41
MQ+A + P+G T PLVLKAC A L L +G RVHGQ F G
Sbjct: 135 MQIACIRPDGFTFPLVLKACTASLAFLDIGRRVHGQAFRHGLEADVFVQNGLVTFYAKCR 194
Query: 42 ---LVCYLFDGLFDRTIV-FLDLYHLWSRT--EWSAFGSFDGL----LSNEENEYGTALD 91
L +F L DR+IV + + +++ A F+ + + ++ + L
Sbjct: 195 KISLANIVFGRLSDRSIVSWTSIISGYAQNGQPIEALRIFNQMREVNVKPDQIALVSVLR 254
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQ------------PNVTL 136
D+E LE GK +HG +IK+GLE E DLLISLTA+ C PN+ L
Sbjct: 255 AYTDVEDLEHGKSIHGCVIKMGLEFEIDLLISLTAMYAKCGQVMFARLFFDQVRIPNLIL 314
Query: 137 RNAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIG 166
NAMISGYAKNGYAEEA++LF +WM YIG
Sbjct: 315 WNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILACAQMGSLELARWMSDYIG 374
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+SE+RN+ V++ LIDM++KCGSVDLA FDR LDKDVV+ S+MI+GYGLH
Sbjct: 375 RSEFRNDAFVSSALIDMFSKCGSVDLARDVFDRALDKDVVLWSSMIMGYGLH 426
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 121/305 (39%), Gaps = 76/305 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
++ + +Y +I T L++ A G + A FD D DV + +A+I Y
Sbjct: 70 FVSRLQYNGFLI--TKLVNCCATLGEIRYARNVFDYYPDPDVFLWNAIIRCY-------- 119
Query: 224 GSFDGLLSNEENEYG----------------TALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
+ L N Y C+ L FL+ G+ VHG + GLE
Sbjct: 120 -TRQNLFCNAIEMYARMQIACIRPDGFTFPLVLKACTASLAFLDIGRRVHGQAFRHGLEA 178
Query: 268 E---SDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ + L++ A CR ++ W ++ISGYA+NG EA+++F +
Sbjct: 179 DVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQNGQPIEALRIFNQMR 238
Query: 313 DYYI----------------------GKS----------EYRNNVIVNTVLIDMYAKCGS 340
+ + GKS E+ +++++ L MYAKCG
Sbjct: 239 EVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEIDLLIS--LTAMYAKCGQ 296
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
V A +FFD+ ++++ +AM GY +G EE LF + P V+
Sbjct: 297 VMFARLFFDQVRIPNLILWNAMISGYAKNGYAEEALELFRRMITMNFGPDSITITSVILA 356
Query: 401 LARAG 405
A+ G
Sbjct: 357 CAQMG 361
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 44/183 (24%)
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPK-------------------------WMDYYIG 317
P+V LWNA+I Y + A++++ + ++D IG
Sbjct: 107 PDVFLWNAIIRCYTRQNLFCNAIEMYARMQIACIRPDGFTFPLVLKACTASLAFLD--IG 164
Query: 318 K----SEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+ +R+ +V V L+ YAKC + LA + F R D+ +V +++ GY +
Sbjct: 165 RRVHGQAFRHGLEADVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQN 224
Query: 370 GLGEEGWVLFHHIRKHGIEPRH-------QHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
G E +F+ +R+ ++P + Y V DL G S H M + E+
Sbjct: 225 GQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDL--EHGKSIHGCVIKMGLEFEID 282
Query: 423 LSV 425
L +
Sbjct: 283 LLI 285
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 217/482 (45%), Gaps = 136/482 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
Y + +D + L+Q +H ++ LGL+ L+ L
Sbjct: 24 YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FPKWMDYYIGKSE------ 169
+P + NA+I GY++N + ++A+ + FP + G S
Sbjct: 81 RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140
Query: 170 ---------YRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYGLH 218
+ +V V LI +YAKC + A F+ ++ +V +A++ Y +
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200
Query: 219 --EWSAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
A F + + AL + L+ L+QG+ +H ++K+GLE+E DLL
Sbjct: 201 GEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260
Query: 273 ISLT---AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
ISL A C PN+ LWNAMISGYAKNGYA EA+ +F
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 320
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ M Y+G+S+YR++V +++ LIDM+AKCGSV+ A +
Sbjct: 321 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLV 380
Query: 348 FDRTLDKDVVMRSAMTVGYGLHG------------------------LG----------- 372
FDRTLD+DVV+ SAM VGYGLHG LG
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
EGW F+ + H I P+ QHYA V+DLL RAG+ + A++ I MP++ ++V ALLSA
Sbjct: 441 REGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500
Query: 433 WK 434
K
Sbjct: 501 CK 502
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 185/405 (45%), Gaps = 109/405 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY----- 45
MQ+A V+P+ T P +LKAC L L MG VH Q+F LGF + Y
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169
Query: 46 ------LFDG--LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCD-- 95
+F+G L +RTIV W+ + + + + + E + +D D
Sbjct: 170 LGSARTVFEGLPLPERTIVS------WTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWV 223
Query: 96 -----------LEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC------------R 129
L+ L+QG+ +H ++K+GLE+E DLLISL A C
Sbjct: 224 ALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKM 283
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLF------------------------------PK 159
PN+ L NAMISGYAKNGYA EA+ +F +
Sbjct: 284 KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQAR 343
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH- 218
M Y+G+S+YR++V +++ LIDM+AKCGSV+ A + FDRTLD+DVV+ SAMIVGYGLH
Sbjct: 344 SMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHG 403
Query: 219 ----EWSAFGSFD--GLLSNEENEYGTALDCS---------------CDLEFLEQGKIVH 257
S + + + G+ N+ G + C+ D + Q +
Sbjct: 404 RAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYA 463
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
+ LG D + QP VT+W A++S K+ + E
Sbjct: 464 CVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 128/458 (27%), Positives = 197/458 (43%), Gaps = 132/458 (28%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNA 139
DL+ L+ G+++H + K GL+L+ L+ + CR + ++
Sbjct: 42 DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTV 101
Query: 140 MISGYAKNGYAEEAVKLFPKW------------------------------MDYYIGKSE 169
MI GYA+ G A E++ LF K +D YI + +
Sbjct: 102 MIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK 161
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
++ +VI+ T +IDMYAKCG V+ A FDR +K+V+ SAMI YG H A F
Sbjct: 162 FQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFR 221
Query: 228 GLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR 280
+LS+ ++ + L DL+ L+ G+++H + K GL+L+ L+ + CR
Sbjct: 222 MMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCR 281
Query: 281 Y------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW----------------- 311
+ ++ W MI GYA+ G A E++ LF K
Sbjct: 282 EIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVF 341
Query: 312 -------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+D YI + +++ +VI+ T +IDM+AKCG V+ A FDR +K+V+
Sbjct: 342 ACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS 401
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
SAM YG HG G + LF + + GI P
Sbjct: 402 WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMW 461
Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+HY VVDLL RAG + A K I +M +E
Sbjct: 462 EDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVE 499
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 98/311 (31%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTL 136
CS DL+ L+ G+++H + K GL+L+ L+ + CR + ++
Sbjct: 242 CS-DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVT 300
Query: 137 RNAMISGYAKNGYAEEAVKLFPKW------------------------------MDYYIG 166
MI GYA+ G A E++ LF K +D YI
Sbjct: 301 WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 360
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
+ +++ +VI+ T +IDM+AKCG V+ A FDR +K+V+ SAMI YG H
Sbjct: 361 RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH-------- 412
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ ALD + M++ G+ L+SL C +
Sbjct: 413 --------GQGRKALD-------------LFPMMLRSGILPNKITLVSLLYACSHA---- 447
Query: 287 LWNAMISGYAKNGYAEEAVKLFP-KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
G EE ++ F W DY + R +V T ++D+ + G +D A
Sbjct: 448 ------------GLVEEGLRFFSLMWEDYSV-----RADVKHYTCVVDLLGRAGRLDEAL 490
Query: 346 MFFDR-TLDKD 355
+ T++KD
Sbjct: 491 KLIESMTVEKD 501
>gi|326504782|dbj|BAK06682.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 686
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 173/375 (46%), Gaps = 101/375 (26%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIV-----GYGLHEWSAFG 224
+ ++ LI MY CG A FD R ++DVV +++I G L F
Sbjct: 221 DTRFLHNSLIPMYFSCGDAGRARRVFDGMRDCERDVVSWTSLISRLVQSGSPLQALRLFA 280
Query: 225 SFDGLLSNEENEYG---TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV--- 278
+ + + ++ T L +L+ L + H ++K G + E D++ +LTA+
Sbjct: 281 AM--MCCDVRPDFVLLVTVLKAYMELDDLPGAQSAHSLVVKGGFDDEQDVVTTLTAMYAK 338
Query: 279 --C---------RYQP---NVTLWNAMISGYAKNGYAEEAVKLFPK-------------- 310
C R P NV LWNAMISGY+KNG A EAV LF +
Sbjct: 339 FGCIVAARALFDRIPPPRVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVT 398
Query: 311 ------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR-- 350
WM+ Y+ +SE R +V+VNT LIDMYAK GS+ A F++
Sbjct: 399 LRSVIMACAQLGSTELAVWMEDYVRRSECREDVLVNTALIDMYAKSGSIAHARRVFEQMH 458
Query: 351 TLDKDVVMRSAMTVGYGLHG------------------------LG-----------EEG 375
++DVV+ SA+ GYG HG LG E+G
Sbjct: 459 AQERDVVVWSALISGYGAHGHLAEAVGLFEDMKLAGVKPNDVTFLGLLSACNHAGAVEKG 518
Query: 376 WVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
W FH ++ H IEPRHQHYA VVDLLARAG + A++FI++MPI+ +SV ALL K
Sbjct: 519 WFYFHSMKPDHKIEPRHQHYACVVDLLARAGQLDRAYRFILDMPIKPEMSVWGALLHGCK 578
Query: 435 IPMQQWENMLQTIRG 449
M + NM R
Sbjct: 579 --MHEHSNMAMAERA 591
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 89/182 (48%), Gaps = 51/182 (28%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-----C---------RYQP- 132
T L +L+ L + H ++K G + E D++ +LTA+ C R P
Sbjct: 296 TVLKAYMELDDLPGAQSAHSLVVKGGFDDEQDVVTTLTAMYAKFGCIVAARALFDRIPPP 355
Query: 133 --NVTLRNAMISGYAKNGYAEEAVKLFPK------------------------------- 159
NV L NAMISGY+KNG A EAV LF +
Sbjct: 356 RVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELA 415
Query: 160 -WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR--TLDKDVVMRSAMIVGYG 216
WM+ Y+ +SE R +V+VNT LIDMYAK GS+ A F++ ++DVV+ SA+I GYG
Sbjct: 416 VWMEDYVRRSECREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYG 475
Query: 217 LH 218
H
Sbjct: 476 AH 477
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 146/493 (29%), Positives = 209/493 (42%), Gaps = 151/493 (30%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLRNAMISG 143
L++GK +HG +I G ++++ A CR + ++ N MISG
Sbjct: 46 LKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISG 105
Query: 144 YAKNGYAEEA-------------------VKLFPKWMDY-----------YIGKSEYRNN 173
YA+NG+A+ A V + P D Y+ ++ + +
Sbjct: 106 YAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESL 165
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF------- 226
V V+T L+DMY+KCGSV +A + FD + VV ++MI GY + A G+
Sbjct: 166 VNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGY-VQSGDAEGAMLIFQKML 224
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAVCR 280
+G+ G AL DL LE+GK VH + +L +L+SD+ LIS+ + C+
Sbjct: 225 DEGVQPTNVTVMG-ALHACADLGDLERGKFVHKLVDQL--KLDSDVSVMNSLISMYSKCK 281
Query: 281 YQP----------NVTL--WNAMISGYAKNGYAEEAVKLF-------------------- 308
N TL WNAMI GYA+NG EA+ F
Sbjct: 282 RVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIP 341
Query: 309 ----------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
KW+ + + NV V T L+DMYAKCG++ A FD + V+
Sbjct: 342 ALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVIT 401
Query: 359 RSAMTVGYGLHGLG-----------------------------------EEGWVLFHHIR 383
+AM GYG HGLG EEG F ++
Sbjct: 402 WNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMK 461
Query: 384 K-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWEN 442
K +GIEP HY +VDLL RAG N A+ FI MPI+ ++V A+L A KI
Sbjct: 462 KDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIH------ 515
Query: 443 MLQTIRGIDEGEK 455
+ +D GEK
Sbjct: 516 -----KNVDLGEK 523
>gi|326528345|dbj|BAJ93354.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 609
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 172/371 (46%), Gaps = 101/371 (27%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIV-----GYGLHEWSAFGSFDG 228
++ LI MY CG A FD R ++DVV +++I G L F +
Sbjct: 148 LHNSLIPMYFSCGDAGRARRVFDGMRDCERDVVSWTSLISRLVQSGSPLQALRLFAAM-- 205
Query: 229 LLSNEENEYG---TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-----C- 279
+ + ++ T L +L+ L + H ++K G + E D++ +LTA+ C
Sbjct: 206 MCCDVRPDFVLLVTVLKAYMELDDLPGAQSAHSLVVKGGFDDEQDVVTTLTAMYAKFGCI 265
Query: 280 --------RYQP---NVTLWNAMISGYAKNGYAEEAVKLFPK------------------ 310
R P NV LWNAMISGY+KNG A EAV LF +
Sbjct: 266 VAARALFDRIPPPRVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSV 325
Query: 311 --------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR--TLDK 354
WM+ Y+ +SE R +V+VNT LIDMYAK GS+ A F++ ++
Sbjct: 326 IMACAQLGSTELAVWMEDYVRRSECREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQER 385
Query: 355 DVVMRSAMTVGYGLHG------------------------LG-----------EEGWVLF 379
DVV+ SA+ GYG HG LG E+GW F
Sbjct: 386 DVVVWSALISGYGAHGHLAEAVGLFEDMKLAGVKPNDVTFLGLLSACNHAGAVEKGWFYF 445
Query: 380 HHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQ 438
H ++ H IEPRHQHYA VVDLLARAG + A++FI++MPI+ +SV ALL K+
Sbjct: 446 HSMKPDHKIEPRHQHYACVVDLLARAGQLDRAYRFILDMPIKPEMSVWGALLHGCKV--H 503
Query: 439 QWENMLQTIRG 449
+ NM R
Sbjct: 504 EHSNMAMAERA 514
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 89/182 (48%), Gaps = 51/182 (28%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-----C---------RYQP- 132
T L +L+ L + H ++K G + E D++ +LTA+ C R P
Sbjct: 219 TVLKAYMELDDLPGAQSAHSLVVKGGFDDEQDVVTTLTAMYAKFGCIVAARALFDRIPPP 278
Query: 133 --NVTLRNAMISGYAKNGYAEEAVKLFPK------------------------------- 159
NV L NAMISGY+KNG A EAV LF +
Sbjct: 279 RVNVILWNAMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELA 338
Query: 160 -WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR--TLDKDVVMRSAMIVGYG 216
WM+ Y+ +SE R +V+VNT LIDMYAK GS+ A F++ ++DVV+ SA+I GYG
Sbjct: 339 VWMEDYVRRSECREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYG 398
Query: 217 LH 218
H
Sbjct: 399 AH 400
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 139/495 (28%), Positives = 210/495 (42%), Gaps = 147/495 (29%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLRNAMISG 143
L++GK +HG +I ++++ A CR + ++ N +I+G
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222
Query: 144 YAKNGYAEEAVKLFPKWMD----------------------YYIGKS--------EYRNN 173
+++NG+A++A++L + D +GKS +
Sbjct: 223 FSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLL 230
V ++T L DMY+KCGSV+ A + FD K VV ++M+ GY G E A F+ +L
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE-KAIAVFEKML 341
Query: 231 SNEENEYGT----ALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY-- 281
+ G AL DL LE+GK VH F+ +L L + + LIS+ + C+
Sbjct: 342 EEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD 401
Query: 282 -----------QPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+ +V+ WNAMI GYA+NG EA+ F
Sbjct: 402 IASDIFNNLNGRTHVS-WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPAL 460
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
KW+ I +S N+ V T L+DMY+KCG++ +A FD D+ V+ +
Sbjct: 461 AELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWN 520
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRK------------------------------------ 384
AM GYG HGLG LF ++K
Sbjct: 521 AMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQD 580
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENML 444
+G+EP HY +VDLL RAG A+ FI NMPI ++V A+L A KI
Sbjct: 581 YGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIH-------- 632
Query: 445 QTIRGIDEGEKTDKR 459
+ I+ GEK K+
Sbjct: 633 ---KNIEVGEKAAKK 644
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 56/317 (17%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHEWSAF---G 224
N + T L+ +++K GS++ A F+ DK + M+ GY L AF
Sbjct: 79 NEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM 138
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY 281
+D + N + L D L++GK +HG +I ++++ A CR
Sbjct: 139 RYDDVKPVVYN-FTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQ 197
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---------------- 313
+ ++ WN +I+G+++NG+A++A++L + D
Sbjct: 198 IDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPA 257
Query: 314 ------YYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+GKS + V ++T L DMY+KCGSV+ A + FD K VV
Sbjct: 258 AADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSW 317
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG---YSNHAFKFIMN 416
++M GY +G E+ +F + + GI+P + A G KF+
Sbjct: 318 NSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQ 377
Query: 417 MPIELRLSVRRALLSAW 433
+ + +SV +L+S +
Sbjct: 378 LNLGSDISVMNSLISMY 394
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 202/472 (42%), Gaps = 139/472 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLI-----SLTAVCRYQPN------------VTLRNAMI 141
L++G+ +HG +I G E S+L + SL A CR N + ++
Sbjct: 161 LKKGREIHGLIITNGFE--SNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLV 218
Query: 142 SGYAKNGYAEEAVKL-------------------FPKWMDY-----------YIGKSEYR 171
+GYA+NG+A+ A++L P D Y +S +
Sbjct: 219 AGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFE 278
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
+ V V L+DMY KCGS +A + F K VV + MI G + S AF +F +
Sbjct: 279 SLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKM 338
Query: 230 LSNEE-----NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY 281
L E G L C+ +L LE+G VH + KL L+ + LIS+ + C+
Sbjct: 339 LDEGEVPTRVTMMGVLLACA-NLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKR 397
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
+ NVT WNAMI GYA+NG +EA+ LF
Sbjct: 398 VDIAASIFNNLEKTNVT-WNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456
Query: 309 ---------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
KW+ ++ NNV V+T L+DMYAKCG++ A FD ++ V+
Sbjct: 457 LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITW 516
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI-------------------------------- 387
+AM GYG HG+G+E LF+ ++K +
Sbjct: 517 NAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQE 576
Query: 388 ----EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP HY+ +VDLL RAG + A+ FI MPI+ +SV A+L A KI
Sbjct: 577 DYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKI 628
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 127/418 (30%), Positives = 178/418 (42%), Gaps = 123/418 (29%)
Query: 138 NAMISGYAKNGYAEEA-------------------VKLFPKWMDY-----------YIGK 167
N +ISGYA+NG+ + A V + P D Y +
Sbjct: 245 NTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMR 304
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
+ + + V V+T L+DMY+KCGSV A + FDR K VV ++MI GY + +A
Sbjct: 305 AGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEI 364
Query: 226 FDGLLSNEENEYGT-----ALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISL 275
F ++ +E+ E AL DL +EQG+ VH + +L EL SD+ LIS+
Sbjct: 365 FQKMM-DEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQL--ELGSDVSVMNSLISM 421
Query: 276 TAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF--------------- 308
+ C+ + WNAMI GYA+NG EA+ F
Sbjct: 422 YSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTM 481
Query: 309 ---------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
KW+ + ++ NV V T L+DMYAKCG+V A FD +
Sbjct: 482 VSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDE 541
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK----------------------------- 384
+ V +AM GYG HGLG+ LF ++K
Sbjct: 542 RHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQY 601
Query: 385 -------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+G+EP HY +VDLL RA N A+ FI MPIE +SV A+L A +I
Sbjct: 602 FGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRI 659
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 136/348 (39%), Gaps = 81/348 (23%)
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGK------ 167
L + M+ GYA+N ++AV F + D GK
Sbjct: 142 LYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQL 201
Query: 168 --SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
+ + +NV T +++MYAKC V+ A FDR ++D+V + +I GY + +
Sbjct: 202 IVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTAL 261
Query: 226 FDGLLSNEENEYGTA------LDCSCDLEFLEQGKIVHGFMIKLGLEL---ESDLLISLT 276
L EE + + L D+ L G+ +HG+ ++ G E S L+ +
Sbjct: 262 ELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMY 321
Query: 277 AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS----- 319
+ C V WN+MI GY +NG A+++F K MD + +
Sbjct: 322 SKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVM 381
Query: 320 -------------------------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
E ++V V LI MY+KC VD+A F+ K
Sbjct: 382 GALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHK 441
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+V +AM +GY +G E F ++ I+P V+ LA
Sbjct: 442 TLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALA 489
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 116/295 (39%), Gaps = 81/295 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------- 41
MQ P+ T +L A + SL +G +HG GF
Sbjct: 267 MQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGS 326
Query: 42 --LVCYLFDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGT-----AL 90
+FD + +T+V +D Y + + +A F ++ +E+ E AL
Sbjct: 327 VGTARLIFDRMTGKTVVSWNSMIDGY-VQNGDPGAAMEIFQKMM-DEQVEMTNVTVMGAL 384
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAVCR------------YQPN 133
DL +EQG+ VH + +L EL SD+ LIS+ + C+
Sbjct: 385 HACADLGDVEQGRFVHKLLDQL--ELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKT 442
Query: 134 VTLRNAMISGYAKNGYAEEAVKLF------------------------------PKWMDY 163
+ NAMI GYA+NG EA+ F KW+
Sbjct: 443 LVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHG 502
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ ++ NV V T L+DMYAKCG+V A FD ++ V +AMI GYG H
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTH 557
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 37/182 (20%)
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGK------ 318
L++ M+ GYA+N ++AV F + D GK
Sbjct: 142 LYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQL 201
Query: 319 --SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
+ + +NV T +++MYAKC V+ A FDR ++D+V + + GY +G G+
Sbjct: 202 IVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTAL 261
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVRRALLS 431
L +++ G P ++ +A R G S H + M E ++V AL+
Sbjct: 262 ELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYS--MRAGFESFVNVSTALVD 319
Query: 432 AW 433
+
Sbjct: 320 MY 321
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 181/421 (42%), Gaps = 116/421 (27%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD----------------------YYIG-- 166
+ + L N MISG+++N Y E+++++F +D Y +G
Sbjct: 176 ERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMG 235
Query: 167 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL-HE 219
K ++V V T LI +Y+KCG + FD+ D++ +AMI GY HE
Sbjct: 236 IQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHE 295
Query: 220 W-SAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
SA F LL++ + + L L+ +++ +K+G+ L+ + +
Sbjct: 296 TESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTA 355
Query: 275 LTAV-CRYQ------------PNVTL--WNAMISGYAKNGYAEEAVKLFP---------- 309
LT V CR P +L WNAMISGY +NG + A+ LF
Sbjct: 356 LTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNP 415
Query: 310 -------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
KW+ I +NV V+T L+DMYAKCGS+ A FD
Sbjct: 416 VTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDL 475
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI----------------------- 387
+DK+VV +AM GYGLHG G+E LF+ + + GI
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEG 535
Query: 388 -------------EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+P +HYA +VD+L RAG +A +FI MP+E +V ALL A
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595
Query: 435 I 435
I
Sbjct: 596 I 596
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQ------------PNVTLR--NAMISG 143
L+ +++ +K+G+ L+ + +LT V CR P +L NAMISG
Sbjct: 331 LQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISG 390
Query: 144 YAKNGYAEEAVKLFP-----------------------------KWMDYYIGKSEYRNNV 174
Y +NG + A+ LF KW+ I +NV
Sbjct: 391 YTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNV 450
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V+T L+DMYAKCGS+ A FD +DK+VV +AMI GYGLH
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLH 494
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 126/336 (37%), Gaps = 86/336 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF----------PKWMDYYIGKSEYR--------- 171
+P++ L N +I G++ NG + ++ L+ P Y S
Sbjct: 74 KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGV 133
Query: 172 ------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
+N+ V + ++D+Y K +LA FD ++D V+ + MI G+ +
Sbjct: 134 LLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNS 193
Query: 220 WSA------FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-- 271
+ D LS + T L +L+ G + K G L SD+
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKG--LHSDVYV 251
Query: 272 ---LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF-------- 308
LISL + C QP++ +NAMISGY N E AV LF
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ 311
Query: 309 -----------PKWMDY-YIGKSEYRNNV----------IVNTVLIDMYAKCGSVDLAPM 346
P ++ + ++ S N+ V+T L +Y + V A
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ 371
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
FD + +K + +AM GY +GL + LF +
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM 407
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 102/265 (38%), Gaps = 60/265 (22%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEE 234
T L + G+V F++ D+ + + +I G+ GL + S F L +
Sbjct: 50 TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIF--LYTHLRKKT 107
Query: 235 N------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------- 281
N Y A+ + LE G ++H I G+ S+L + V Y
Sbjct: 108 NLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVA--SNLFVGSAIVDLYFKFTRAE 165
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------------------ 313
+ + LWN MISG+++N Y E+++++F +D
Sbjct: 166 LARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
Query: 314 ----YYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
Y +G K ++V V T LI +Y+KCG + FD+ D++ +A
Sbjct: 226 ELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNA 285
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHG 386
M GY + E LF + G
Sbjct: 286 MISGYTFNHETESAVTLFRELLASG 310
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 181/421 (42%), Gaps = 116/421 (27%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD----------------------YYIG-- 166
+ + L N MISG+++N Y E+++++F +D Y +G
Sbjct: 176 ERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMG 235
Query: 167 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL-HE 219
K ++V V T LI +Y+KCG + FD+ D++ +AMI GY HE
Sbjct: 236 IQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHE 295
Query: 220 W-SAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
SA F LL++ + + L L+ +++ +K+G+ L+ + +
Sbjct: 296 TESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTA 355
Query: 275 LTAV-CRYQ------------PNVTL--WNAMISGYAKNGYAEEAVKLFP---------- 309
LT V CR P +L WNAMISGY +NG + A+ LF
Sbjct: 356 LTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNP 415
Query: 310 -------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
KW+ I +NV V+T L+DMYAKCGS+ A FD
Sbjct: 416 VTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDL 475
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI----------------------- 387
+DK+VV +AM GYGLHG G+E LF+ + + GI
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEG 535
Query: 388 -------------EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+P +HYA +VD+L RAG +A +FI MP+E +V ALL A
Sbjct: 536 NEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595
Query: 435 I 435
I
Sbjct: 596 I 596
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQ------------PNVTLR--NAMISG 143
L+ +++ +K+G+ L+ + +LT V CR P +L NAMISG
Sbjct: 331 LQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISG 390
Query: 144 YAKNGYAEEAVKLFP-----------------------------KWMDYYIGKSEYRNNV 174
Y +NG + A+ LF KW+ I +NV
Sbjct: 391 YTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNV 450
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V+T L+DMYAKCGS+ A FD +DK+VV +AMI GYGLH
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLH 494
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 126/336 (37%), Gaps = 86/336 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF----------PKWMDYYIGKSEYR--------- 171
+P++ L N +I G++ NG + ++ L+ P Y S
Sbjct: 74 KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGV 133
Query: 172 ------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
+N+ V + ++D+Y K +LA FD ++D V+ + MI G+ +
Sbjct: 134 LLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNS 193
Query: 220 WSA------FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-- 271
+ D LS + T L +L+ G + K G L SD+
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKG--LHSDVYV 251
Query: 272 ---LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF-------- 308
LISL + C QP++ +NAMISGY N E AV LF
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ 311
Query: 309 -----------PKWMDY-YIGKSEYRNNV----------IVNTVLIDMYAKCGSVDLAPM 346
P ++ + ++ S N+ V+T L +Y + V A
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ 371
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
FD + +K + +AM GY +GL + LF +
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM 407
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 103/264 (39%), Gaps = 58/264 (21%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL----- 229
T L + G+V F++ D+ + + +I G+ GL + S F + L
Sbjct: 50 TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIF-LYTHLRKXTN 108
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 281
L + Y A+ + LE G ++H I G+ S+L + V Y
Sbjct: 109 LRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVA--SNLFVGSAIVDLYFKFTRAEL 166
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------------------- 313
+ + LWN MISG+++N Y E+++++F +D
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226
Query: 314 ---YYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y +G K ++V V T LI +Y+KCG + FD+ D++ +AM
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHG 386
GY + E LF + G
Sbjct: 287 ISGYTFNHETESAVTLFRELLASG 310
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/472 (27%), Positives = 197/472 (41%), Gaps = 137/472 (29%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQPNVTLR-------------NAMIS 142
L G+ VH + GL L + L ++ A CR +P R NA+++
Sbjct: 241 LATGRAVHAQLAARGLSPEALAATALANMYAKCR-RPGDARRVFDRMPARDRVAWNALVA 299
Query: 143 GYAKNGYAEEAV--------------------KLFPKWMDY-----------YIGKSEYR 171
GYA+NG AE AV + P D + + +
Sbjct: 300 GYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFD 359
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL 229
V V+T ++D+Y KCG+VD A FD D++ V +AMI GY + A F +
Sbjct: 360 EQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRM 419
Query: 230 LSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR-- 280
+ + AL +L FL++G+ VH ++++GLE ++ LI++ C+
Sbjct: 420 VGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRT 479
Query: 281 -----------YQPNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
Y+ V+ WNAMI G +NG +E+AV+LF
Sbjct: 480 DLAAQVFDELGYKTRVS-WNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPA 538
Query: 309 ---------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+W+ Y + +V V T LIDMYAKCG V +A F+ D+ V+
Sbjct: 539 LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITW 598
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRK----------------------------------- 384
+AM GYG HG G+ LF ++
Sbjct: 599 NAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKE 658
Query: 385 -HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+G+EP +HY +VDLL RAG + A+ FI MP+E +SV A+L A K+
Sbjct: 659 DYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKL 710
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 47/177 (26%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR-------------YQ 131
AL +L FL++G+ VH ++++GLE ++ LI++ C+ Y+
Sbjct: 433 AALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYK 492
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLF------------------------------PKWM 161
V+ NAMI G +NG +E+AV+LF +W+
Sbjct: 493 TRVSW-NAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWI 551
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
Y + +V V T LIDMYAKCG V +A F+ D+ V+ +AMI GYG H
Sbjct: 552 HGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSH 608
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 138/495 (27%), Positives = 208/495 (42%), Gaps = 147/495 (29%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLRNAMISG 143
L++GK +HG +I ++++ A CR + ++ N +I+G
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222
Query: 144 YAKNGYAEEAVKLFPKWMD----------------------YYIGKS--------EYRNN 173
+++NG+A++A++L + D +GKS +
Sbjct: 223 FSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL 282
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLL 230
V ++T L DMY+KCGSV+ A + FD K VV ++M+ GY G E A F+ +L
Sbjct: 283 VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE-KAIAVFEKML 341
Query: 231 SNEENEYGT----ALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY-- 281
+ G AL DL LE+GK VH F+ +L L + + LIS+ + C+
Sbjct: 342 EEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVD 401
Query: 282 -----------QPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+ +V+ WNAMI GYA+NG EA+ F
Sbjct: 402 IASDIFNNLNGRTHVS-WNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPAL 460
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
KW+ I +S N+ V T L+DMY+KCG++ +A FD D+ V+ +
Sbjct: 461 AELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWN 520
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRK------------------------------------ 384
AM GYG HGLG LF ++K
Sbjct: 521 AMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQD 580
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENML 444
+G+EP HY +VDLL RAG A+ FI NMPI ++V A A KI
Sbjct: 581 YGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIH-------- 632
Query: 445 QTIRGIDEGEKTDKR 459
+ I+ GEK K+
Sbjct: 633 ---KNIEVGEKAAKK 644
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 56/317 (17%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHEWSAF---G 224
N + T L+ +++K GS++ A F+ DK + M+ GY L AF
Sbjct: 79 NEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM 138
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY 281
+D + N + L D L++GK +HG +I ++++ A CR
Sbjct: 139 RYDDVKPVVYN-FTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQ 197
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---------------- 313
+ ++ WN +I+G+++NG+A++A++L + D
Sbjct: 198 IDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPA 257
Query: 314 ------YYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+GKS + V ++T L DMY+KCGSV+ A + FD K VV
Sbjct: 258 AADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSW 317
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG---YSNHAFKFIMN 416
++M GY +G E+ +F + + GI+P + A G KF+
Sbjct: 318 NSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQ 377
Query: 417 MPIELRLSVRRALLSAW 433
+ + +SV +L+S +
Sbjct: 378 LNLGSDISVMNSLISMY 394
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 130/473 (27%), Positives = 196/473 (41%), Gaps = 140/473 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLT---AVCRY------------QPNVTLRNAMISG 143
L GK +HG ++K G L+ + L A CR + ++ N +++G
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAG 210
Query: 144 YAKNGYAEEA-------------------VKLFP-----------KWMDYYIGKSEYRNN 173
Y++NG A A V + P K + Y ++ + +
Sbjct: 211 YSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSL 270
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS 231
V + T L+DMYAKCGS+ A + FD L+++VV ++MI Y +E A F +L
Sbjct: 271 VNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLD 330
Query: 232 N----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-------LISLTAVCR 280
+ AL DL LE+G+ +H KL +ELE D LIS+ C+
Sbjct: 331 EGVKPTDVSVMGALHACADLGDLERGRFIH----KLSVELELDRNVSVVNSLISMYCKCK 386
Query: 281 ------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------- 309
+ WNAMI G+A+NG EA+ F
Sbjct: 387 EVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVIT 446
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
KW+ + ++ NV V T L+DMYAKCG++ +A + FD ++ V
Sbjct: 447 AIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRK---------------------------------- 384
+AM GYG HG+G+ LF ++K
Sbjct: 507 WNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMK 566
Query: 385 --HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ IEP HY +VDLL RAG N A+ FIM MP++ ++V A+L A +I
Sbjct: 567 ENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQI 619
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 137/354 (38%), Gaps = 83/354 (23%)
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------KS 168
M+ G+AK ++A+K F + D + KS
Sbjct: 105 TMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
+ ++ T L +MYAKC V A FDR ++D+V + ++ GY + +
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224
Query: 229 LLSNEEN------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC 279
L EEN + L L + GK +HG+ ++ G + ++ L+ + A C
Sbjct: 225 NLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKC 284
Query: 280 ------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------ 321
+ NV WN+MI Y +N +EA+ +F K +D + ++
Sbjct: 285 GSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGAL 344
Query: 322 -------------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
RN +VN+ LI MY KC VD A F + + +
Sbjct: 345 HACADLGDLERGRFIHKLSVELELDRNVSVVNS-LISMYCKCKEVDTAASMFGKLQSRTI 403
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
V +AM +G+ +G E F ++ ++P Y V+ +A ++HA
Sbjct: 404 VSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA 457
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 111/289 (38%), Gaps = 83/289 (28%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------------------LVCYL 46
P+ T VL A AL + +G +HG GF L
Sbjct: 234 PSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLL 293
Query: 47 FDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSN----EENEYGTALDCSCDLEF 98
FDG+ +R +V +D Y + + A F +L + AL DL
Sbjct: 294 FDGMLERNVVSWNSMIDAY-VQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGD 352
Query: 99 LEQGKIVHGFMIKLGLELESDL-------LISLTAVCR------------YQPNVTLRNA 139
LE+G+ +H KL +ELE D LIS+ C+ + NA
Sbjct: 353 LERGRFIH----KLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNA 408
Query: 140 MISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSE 169
MI G+A+NG EA+ F KW+ + ++
Sbjct: 409 MILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC 468
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
NV V T L+DMYAKCG++ +A + FD ++ V +AMI GYG H
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTH 517
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 129/470 (27%), Positives = 195/470 (41%), Gaps = 134/470 (28%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLT---AVCRYQPNVTLR-------------NAMIS 142
L GK +HG ++K G L+ + L A CR Q N + N +++
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR-QVNEARKVFDRMPERDLVSWNTIVA 209
Query: 143 GYAKNGYAEEA-------------------VKLFP-----------KWMDYYIGKSEYRN 172
GY++NG A A V + P K + Y +S + +
Sbjct: 210 GYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDS 269
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLL 230
V ++T L+DMYAKCGS++ A FD L+++VV ++MI Y +E A F +L
Sbjct: 270 LVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML 329
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR--- 280
+ AL DL LE+G+ +H ++LGL+ + LIS+ C+
Sbjct: 330 DEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVD 389
Query: 281 ---------YQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
+ WNAMI G+A+NG +A+ F
Sbjct: 390 TAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIA 449
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
KW+ + +S NV V T L+DMYAKCG++ +A + FD ++ V +A
Sbjct: 450 ELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNA 509
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR------------------------------- 390
M GYG HG G+ LF ++K I+P
Sbjct: 510 MIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENY 569
Query: 391 -----HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HY +VDLL RAG N A+ FIM MP++ ++V A+L A +I
Sbjct: 570 SIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQI 619
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 142/547 (25%), Positives = 228/547 (41%), Gaps = 135/547 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V P T P +LKAC +L +L +G +H LG L L+ T L H+++
Sbjct: 103 VTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILG-----LSMDLYVSTA----LLHMYA 153
Query: 66 RTE--WSAFGSFDGLLSNEENEYG-TALDCSCDLEFLEQGKIVHGF--MIKLGLELESDL 120
+ + A F+ + + + A+ + L + +H M + G+ S
Sbjct: 154 KCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHAL-HAQTIHSVAQMQQAGVTPNSST 212
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
L+S+ P + NA+ G A + Y YI ++ + +NV++ T L
Sbjct: 213 LVSIL------PTIGQANALHQGKAIHAY--------------YI-RNFFFDNVVLQTAL 251
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLL-----SNE 233
+DMYAKC + A F+ K+ V SAMI GY LH+ A +D +L +
Sbjct: 252 LDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPT 311
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRYQPN------ 284
T L L L++GK +H MIK G++L++ + LIS+ A C N
Sbjct: 312 PATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLD 371
Query: 285 ------VTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------------------ 314
++A+ISG +NGYAE+A+ +F +
Sbjct: 372 EMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQH 431
Query: 315 ------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
Y + N+ + +IDMY+KCG + ++ FDR ++D++ + M +GYG+
Sbjct: 432 GTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGI 491
Query: 369 HGLGEEGWVLFHHIRKHG------------------------------------IEPRHQ 392
HGL E LF ++ G I+PR
Sbjct: 492 HGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMA 551
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452
HY +VDLLARAG + A+ FI MP + + ALL+A + T + I+
Sbjct: 552 HYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACR-----------THKNIEM 600
Query: 453 GEKTDKR 459
GE+ K+
Sbjct: 601 GEQVSKK 607
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 154/586 (26%), Positives = 235/586 (40%), Gaps = 172/586 (29%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL-----DLYH-------- 62
+L+ C S+ G RV I S G ++ DG+ +VF+ DL
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMI----DGILGVKLVFMYVKCGDLKEGRMVFDKL 211
Query: 63 ------LWSR--TEWSAFGSFD------------GLLSNEENEYGTALDCSCDLEFLEQG 102
LW+ +E+S G++ G+ N + + L C + +E+G
Sbjct: 212 SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYT-FSSILKCFAAVARVEEG 270
Query: 103 KIVHGFMIKLGLELESDLLISLTAV--------CRYQ-------PNVTLRNAMISGYAKN 147
+ VHG + KLG + ++ SL + C + +V N+MISGY KN
Sbjct: 271 RQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKN 330
Query: 148 GYAEEAVKLFPKWM-------------------------------DYYIGKSEYRNNVIV 176
G + +++F K + Y I + V
Sbjct: 331 GLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRF 390
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNE 233
N L+DMY+KCG ++ A F+R +K VV ++MI GY GL + A FD + S
Sbjct: 391 NNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD-GAIKLFDEMKSRG 449
Query: 234 --ENEYG-TALDCSCDLE-FLEQGKIVHGFMIKLGLELES---DLLISLTAVC------- 279
+ Y T++ +C + L+ GKIVH ++ + LE S + L + A C
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAH 509
Query: 280 -----RYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------- 309
+ +V WN MI GY KN EA+ LF
Sbjct: 510 DVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPACASLAA 569
Query: 310 ----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ + Y ++ Y + V ++DMY KCG + LA FD +KD+V + M G
Sbjct: 570 LDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAG 629
Query: 366 YGLHGLG-----------------------------------EEGWVLFHHIRKH-GIEP 389
YG+HG G +EGW +F+ ++K IEP
Sbjct: 630 YGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEP 689
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDLLAR G A KFI MPI+ ++ ALL +I
Sbjct: 690 NLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRI 735
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 149/583 (25%), Positives = 245/583 (42%), Gaps = 167/583 (28%)
Query: 16 VLKACVALPSLLMGPRVHGQIFS--------LGFLVCYLF---------DGLFDRTIVFL 58
VL+ C SL G RVH I S LG + +++ +FD+ +
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDK--IMN 432
Query: 59 DLYHLWS--RTEWSAFGSFDGLLS--NEENEYGTALDC---SCDLE-FLEQGKI-----V 105
D LW+ +E++ G+F +S + + G +C +C L+ F GK+ V
Sbjct: 433 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 492
Query: 106 HGFMIKLGLELESDLLISLTAVC---------------RYQPNVTLRNAMISGYAKNGYA 150
HG+++KLG + ++ SL A +P+V N+MI+G NG++
Sbjct: 493 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 552
Query: 151 EEAVKLFPKWM----------------------DYYIG--------KSEYRNNVIVNTVL 180
+++F + + + +G K+ + V+ + L
Sbjct: 553 GNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTL 612
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD-----GLLSN 232
+DMY+KCG+++ A F + D +V ++ I Y GL+ A G FD G+ +
Sbjct: 613 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYS-DAIGLFDEMQSKGVRPD 671
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL-- 287
C+C L++G+ VH ++IK G+ ++ LI++ A C L
Sbjct: 672 IYTVTSIVHACACSSS-LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 730
Query: 288 ----------WNAMISGYAKNGYAEEAVKLF----------------------------- 308
WN MI GY++N EA++LF
Sbjct: 731 SKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDK 790
Query: 309 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ + +I + Y +++ V L+DMYAKCG + LA + FD KD++ + M GYG+
Sbjct: 791 GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGM 850
Query: 369 HGLGEE-----------------------------------GWVLFHHIRKH-GIEPRHQ 392
HG G E GW F+ +R G+EP+ +
Sbjct: 851 HGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLE 910
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA VVDLLAR G + A+KFI +MPI+ ++ LLS +I
Sbjct: 911 HYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRI 953
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/412 (21%), Positives = 162/412 (39%), Gaps = 109/412 (26%)
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------RNNVIVN 177
+NA I+ + + G A++L K Y +G + Y + +I N
Sbjct: 339 QNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISN 398
Query: 178 TVLID---------MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
+ ID MY CG + FD+ ++ V + + + + E++ G+F
Sbjct: 399 GISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLL-----MSEYAKIGNFRE 453
Query: 229 LLS--NEENEYGTALDC---SCDLE-FLEQGKI-----VHGFMIKLGLELESDLLISLTA 277
+S + + G +C +C L+ F GK+ VHG+++KLG + ++ SL A
Sbjct: 454 SVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 513
Query: 278 VC---------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM---------- 312
+P+V WN+MI+G NG++ +++F + +
Sbjct: 514 AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTT 573
Query: 313 ------------DYYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ +G K+ + V+ + L+DMY+KCG+++ A F +
Sbjct: 574 LVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 633
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-----GYS 407
D +V ++ Y GL + LF ++ G+ P +V A + G
Sbjct: 634 DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD 693
Query: 408 NHAFKFI----MNMPIELRL--------SVRRALLSAWKIPMQ---QWENML 444
H++ N+P+ L SV A L KIP++ W M+
Sbjct: 694 VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 745
>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
Length = 1241
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 150/603 (24%), Positives = 238/603 (39%), Gaps = 177/603 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ + P+G + +VL C L + G ++HG +++ +F+G + +
Sbjct: 538 MQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHG------YIIRNMFEGDPYLETALIGM 591
Query: 61 YHLWSRT--EWSAFGSFD------------------GLLSNEENEYGTALDCSCDL---- 96
Y SR WS FG + G+ Y A + +C L
Sbjct: 592 YSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSAS 651
Query: 97 -----------EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ-------------- 131
E L+ G+ VH +IK+ + + + SL +
Sbjct: 652 FTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVL 711
Query: 132 -PNVTLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS 168
V LRNAMIS + NG A +A+ L+ K Y G++
Sbjct: 712 DKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRT 771
Query: 169 EY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ ++NV + + L+ MY KCGS + A F ++DVV +MI G+ +
Sbjct: 772 VHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRR 831
Query: 221 --SAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
A F + + + + + + LE +E G ++HGF IK GLE SD+ ++
Sbjct: 832 FKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLE--SDVFVA 889
Query: 275 LTAVCRYQ---------------PNVTL--WNAMISGYAKNGYAEEAVKLFPKWMD--YY 315
+ V Y PN L WN+MIS Y+ NG E ++ L P+ + +Y
Sbjct: 890 CSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFY 949
Query: 316 I--------------------GKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ GK+ + +++ V LIDMY KCG + A +
Sbjct: 950 LDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLI 1009
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK----------------------- 384
F+ +++V ++M GYG HG EE LF +++
Sbjct: 1010 FENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMV 1069
Query: 385 -------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+G+EPR +HYA VVDLL RAG + A+ FI MPI+ SV LL
Sbjct: 1070 EEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLF 1129
Query: 432 AWK 434
A +
Sbjct: 1130 ACR 1132
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/433 (21%), Positives = 160/433 (36%), Gaps = 117/433 (27%)
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
L S+T SA L+ + + + L L L G+ +H ++ +GL+ SD
Sbjct: 427 ELHSKTPHSA-------LTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQ--SDPY 477
Query: 122 ISLTAVCRY----------------------QPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
I+ + + Y P++T+ N +I GY K G+ EE + F +
Sbjct: 478 IATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCR 537
Query: 160 WMDY------------------------------YIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ YI ++ + + + T LI MY+ C
Sbjct: 538 MQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSR 597
Query: 190 VDLAPMFFDRTLDK-DVVMRSAMIVGY---GLHEWSAFGSFDGLLSNE-----ENEYGTA 240
A F + ++ ++V + MI G+ G+ W L NE + A
Sbjct: 598 PMEAWSLFGKLENRSNIVAWNVMIGGFVENGM--WEKSLELYSLAKNENCKLVSASFTGA 655
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNV 285
E L+ G+ VH +IK+ + + + SL + V
Sbjct: 656 FTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEV 715
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKSEY-- 321
L NAMIS + NG A +A+ L+ K Y G++ +
Sbjct: 716 ELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAE 775
Query: 322 ------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
++NV + + L+ MY KCGS + A F ++DVV +M G+ + ++
Sbjct: 776 VIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDA 835
Query: 376 WVLFHHIRKHGIE 388
LF + K G++
Sbjct: 836 LDLFRAMEKEGVK 848
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDK-----DVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ T LI+MY KCG + A FD+ + D+ + + + GY +G EEG F
Sbjct: 478 IATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCR 537
Query: 382 IRKHGIEPRHQHYARVVDLLAR-----AGYSNHAFKFIMNMPIELRLSVRRALL---SAW 433
+++ GI P + V+ + R AG H + I NM E + AL+ S+
Sbjct: 538 MQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGY-IIRNM-FEGDPYLETALIGMYSSC 595
Query: 434 KIPMQQW 440
PM+ W
Sbjct: 596 SRPMEAW 602
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 149/583 (25%), Positives = 246/583 (42%), Gaps = 167/583 (28%)
Query: 16 VLKACVALPSLLMGPRVHGQIFS--------LGFLVCYLF---------DGLFDRTIVFL 58
VL+ C SL G RVH I S LG + +++ +FD+ +
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDK--IMN 157
Query: 59 DLYHLWS--RTEWSAFGSFDGLLS--NEENEYGTALDC---SCDLE-FLEQGKI-----V 105
D LW+ +E++ G+F +S + + G +C +C L+ F GK+ V
Sbjct: 158 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 217
Query: 106 HGFMIKLGLELESDLLISLTAVC---------------RYQPNVTLRNAMISGYAKNGYA 150
HG+++KLG + ++ SL A +P+V N+MI+G NG++
Sbjct: 218 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 277
Query: 151 EEAVKLFPKWM----------------------DYYIG--------KSEYRNNVIVNTVL 180
+++F + + + +G K+ + V+ + L
Sbjct: 278 GNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTL 337
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD-----GLLSN 232
+DMY+KCG+++ A F + D +V +++I Y GL+ A G FD G+ +
Sbjct: 338 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYS-DAIGLFDEMQSKGVRPD 396
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL-- 287
C+C L++G+ VH ++IK G+ ++ LI++ A C L
Sbjct: 397 IYTVTSIVHACACS-SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 455
Query: 288 ----------WNAMISGYAKNGYAEEAVKLF----------------------------- 308
WN MI GY++N EA++LF
Sbjct: 456 SKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDK 515
Query: 309 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ + +I + Y +++ V L+DMYAKCG + LA + FD KD++ + M GYG+
Sbjct: 516 GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGM 575
Query: 369 HGLGEE-----------------------------------GWVLFHHIRKH-GIEPRHQ 392
HG G E GW F+ +R G+EP+ +
Sbjct: 576 HGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLE 635
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA VVDLLAR G + A+KFI +MPI+ ++ LLS +I
Sbjct: 636 HYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRI 678
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 87/412 (21%), Positives = 163/412 (39%), Gaps = 109/412 (26%)
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------RNNVIVN 177
+NA I+ + + G A++L K Y +G + Y + +I N
Sbjct: 64 QNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISN 123
Query: 178 TVLID---------MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
+ +D MY CG + FD+ ++ V + + + + E++ G+F
Sbjct: 124 GISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLL-----MSEYAKIGNFRE 178
Query: 229 LLS--NEENEYGTALDC---SCDLE-FLEQGKI-----VHGFMIKLGLELESDLLISLTA 277
+S + + G +C +C L+ F GK+ VHG+++KLG + ++ SL A
Sbjct: 179 SVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 238
Query: 278 VC---------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM---------- 312
+P+V WN+MI+G NG++ +++F + +
Sbjct: 239 AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTT 298
Query: 313 ------------DYYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ +G K+ + V+ + L+DMY+KCG+++ A F +
Sbjct: 299 LVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 358
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-----GYS 407
D +V +++ Y GL + LF ++ G+ P +V A + G
Sbjct: 359 DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD 418
Query: 408 NHAFKFI----MNMPIELRL--------SVRRALLSAWKIPMQ---QWENML 444
H++ N+P+ L SV A L KIP++ W M+
Sbjct: 419 VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 470
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 133/551 (24%), Positives = 223/551 (40%), Gaps = 135/551 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
VAPN T P LKAC AL G +H G F+ L D ++ + D
Sbjct: 121 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLD-MYVKCACLPDA 179
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
H+++ +++ +L+ + G H L ++++
Sbjct: 180 AHIFATMPARDLVAWNAMLAG----------------YAHHGMYHHAVAHLLSMQMQMH- 222
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI-----GKSEYRNNVI 175
R +PN + A++ A+ G + + + + KS+ + V+
Sbjct: 223 --------RLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVL 274
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN- 232
+ T L+DMYAKCGS+ A FD ++ V SA+I G+ L AF F +L+
Sbjct: 275 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 334
Query: 233 ----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL--------TA 277
+AL L+ L G+ +H + K G+ + + L+S+ A
Sbjct: 335 LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394
Query: 278 VCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------- 316
+ + + ++A++SGY +NG AEEA +F K +
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454
Query: 317 -----GKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
G+ + + +I + LIDMYAKCG +DL+ F+ +D+V + M
Sbjct: 455 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 514
Query: 364 VGYGLHGLGEEGWVLF----------------------------------HHIRKHG--I 387
GYG+HGLG+E LF H+ +HG +
Sbjct: 515 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGL 574
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTI 447
PR +HY +VDLL+R G+ + A++FI +MP+ + V ALL A ++
Sbjct: 575 TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRV-----------Y 623
Query: 448 RGIDEGEKTDK 458
+ ID G+K +
Sbjct: 624 KNIDLGKKVSR 634
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 152/596 (25%), Positives = 235/596 (39%), Gaps = 176/596 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------------C-----YL 46
P+ T P V+KAC L S+ +G VH +I +GF + C YL
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204
Query: 47 FDGLFDRTIVFLD--LYHLWSRTEW-SAFGSFDGLLSNEENEYGTALDCS---CDLEFLE 100
FD + + V + L +W +A G F + E N C C E +
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMI 264
Query: 101 Q-GKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLRNAMISGY 144
G +HG ++ GLE++S + L+++ A C + + ++ N MISGY
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGY 324
Query: 145 AKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNNV 174
+NG+ +EA LF K + YI ++ +V
Sbjct: 325 VQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDV 384
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN 232
+ + LID+Y KC V++A FD+ D+V+ +AMI GY L+ + A F LL
Sbjct: 385 FLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE 444
Query: 233 EEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLG--------------------LELE 268
+ L L L GK +HG ++K G L+L
Sbjct: 445 RMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 504
Query: 269 SDLLISLT---AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
I ++ AVC WN+MI+ ++NG EEA+ LF
Sbjct: 505 HQTFIGISDKDAVC--------WNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISA 556
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + ++ + +R+++ + LIDMY+KCG++DLA FD +K+
Sbjct: 557 ALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKN 616
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------ 391
V +++ YG HG ++ LFH + GI+P H
Sbjct: 617 EVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFR 676
Query: 392 ------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDL RAG N AF I +MP V LL A ++
Sbjct: 677 CMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRL 732
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 139/525 (26%), Positives = 216/525 (41%), Gaps = 120/525 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M + V + T V K+ +L S+ G ++HG I GF G + L
Sbjct: 35 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF-------GERNSVGNSLVA 87
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
++L ++ SA FD + + + + ++ E+G V M+ G+E++
Sbjct: 88 FYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 147
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
++S+ A C ++L A+ S K ++ R + NT L
Sbjct: 148 IVSVFAGCADSRLISLGRAVHSIGVKACFS--------------------REDRFCNT-L 186
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE---- 236
+DMY+KCG +D A F D+ VV ++MI GY + G L E E
Sbjct: 187 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA--GEAVKLFEEMEEEGISP 244
Query: 237 ----YGTALDCSCDLEFLEQGKIVHGFMIK--LGLEL-ESDLLISLTAVCRYQPNVTL-- 287
L+C L++GK VH ++ + LG ++ S+ L+ + A C L
Sbjct: 245 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 304
Query: 288 ----------WNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 314
WN +I GY+KN YA EA+ LF ++
Sbjct: 305 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 364
Query: 315 --------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
YI ++ Y ++ V L+DMYAKCG++ LA M FD KD+V + M GY
Sbjct: 365 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 424
Query: 367 GLHGLGEEGWVLFHHIRKHGIE------------------------------------PR 390
G+HG G+E LF+ +R+ GIE P
Sbjct: 425 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 484
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VD+LAR G A++FI NMPI ++ ALL +I
Sbjct: 485 VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 529
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 133/551 (24%), Positives = 222/551 (40%), Gaps = 135/551 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
VAPN T P LKAC AL G +H G F+ L D ++ + D
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLD-MYVKCACLPDA 64
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
H+++ +++ +L+ + G H L ++++
Sbjct: 65 AHIFATMPARDLVAWNAMLAG----------------YAHHGMYHHAVAHLLSMQMQMH- 107
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI-----GKSEYRNNVI 175
R +PN + A++ A+ G + + + + KS+ + V+
Sbjct: 108 --------RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL 159
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN- 232
+ T L+DMYAKCGS+ A FD ++ V SA+I G+ L AF F +L+
Sbjct: 160 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 219
Query: 233 ----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL--------TA 277
+AL L+ L G+ +H + K G+ + + L+S+ A
Sbjct: 220 LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279
Query: 278 VCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------- 316
+ + + ++A++SGY +NG AEEA +F K +
Sbjct: 280 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 339
Query: 317 -----GKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
G+ + + +I + LIDMYAKCG +DL+ F+ +D+V + M
Sbjct: 340 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 399
Query: 364 VGYGLHGLGEEGWVLF----------------------------------HHIRKHG--I 387
GYG+HGLG+E LF H+ HG +
Sbjct: 400 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 459
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTI 447
PR +HY +VDLL+R G+ + A++FI +MP+ + V ALL A ++
Sbjct: 460 TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRV-----------Y 508
Query: 448 RGIDEGEKTDK 458
+ ID G+K +
Sbjct: 509 KNIDLGKKVSR 519
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 139/525 (26%), Positives = 216/525 (41%), Gaps = 120/525 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M + V + T V K+ +L S+ G ++HG I GF G + L
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF-------GERNSVGNSLVA 238
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
++L ++ SA FD + + + + ++ E+G V M+ G+E++
Sbjct: 239 FYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 298
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
++S+ A C ++L A+ S K ++ R + NT L
Sbjct: 299 IVSVFAGCADSRLISLGRAVHSIGVKACFS--------------------REDRFCNT-L 337
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE---- 236
+DMY+KCG +D A F D+ VV ++MI GY + G L E E
Sbjct: 338 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA--GEAVKLFEEMEEEGISP 395
Query: 237 ----YGTALDCSCDLEFLEQGKIVHGFMIK--LGLEL-ESDLLISLTAVCRYQPNVTL-- 287
L+C L++GK VH ++ + LG ++ S+ L+ + A C L
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 455
Query: 288 ----------WNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 314
WN +I GY+KN YA EA+ LF ++
Sbjct: 456 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 515
Query: 315 --------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
YI ++ Y ++ V L+DMYAKCG++ LA M FD KD+V + M GY
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 575
Query: 367 GLHGLGEEGWVLFHHIRKHGIE------------------------------------PR 390
G+HG G+E LF+ +R+ GIE P
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 635
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VD+LAR G A++FI NMPI ++ ALL +I
Sbjct: 636 VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 133/551 (24%), Positives = 222/551 (40%), Gaps = 135/551 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
VAPN T P LKAC AL G +H G F+ L D ++ + D
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLD-MYVKCACLPDA 64
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
H+++ +++ +L+ + G H L ++++
Sbjct: 65 AHIFATMPARDLVAWNAMLAG----------------YAHHGMYHHAVAHLLSMQMQMH- 107
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI-----GKSEYRNNVI 175
R +PN + A++ A+ G + + + + KS+ + V+
Sbjct: 108 --------RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL 159
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN- 232
+ T L+DMYAKCGS+ A FD ++ V SA+I G+ L AF F +L+
Sbjct: 160 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 219
Query: 233 ----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL--------TA 277
+AL L+ L G+ +H + K G+ + + L+S+ A
Sbjct: 220 LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279
Query: 278 VCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------- 316
+ + + ++A++SGY +NG AEEA +F K +
Sbjct: 280 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 339
Query: 317 -----GKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
G+ + + +I + LIDMYAKCG +DL+ F+ +D+V + M
Sbjct: 340 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 399
Query: 364 VGYGLHGLGEEGWVLF----------------------------------HHIRKHG--I 387
GYG+HGLG+E LF H+ HG +
Sbjct: 400 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 459
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTI 447
PR +HY +VDLL+R G+ + A++FI +MP+ + V ALL A ++
Sbjct: 460 TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRV-----------Y 508
Query: 448 RGIDEGEKTDK 458
+ ID G+K +
Sbjct: 509 KNIDLGKKVSR 519
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 133/551 (24%), Positives = 222/551 (40%), Gaps = 135/551 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
VAPN T P LKAC AL G +H G F+ L D ++ + D
Sbjct: 121 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLD-MYVKCACLPDA 179
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
H+++ +++ +L+ + G H L ++++
Sbjct: 180 AHIFATMPARDLVAWNAMLAG----------------YAHHGMYHHAVAHLLSMQMQMH- 222
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI-----GKSEYRNNVI 175
R +PN + A++ A+ G + + + + KS+ + V+
Sbjct: 223 --------RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL 274
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN- 232
+ T L+DMYAKCGS+ A FD ++ V SA+I G+ L AF F +L+
Sbjct: 275 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 334
Query: 233 ----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL--------TA 277
+AL L+ L G+ +H + K G+ + + L+S+ A
Sbjct: 335 LCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394
Query: 278 VCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------- 316
+ + + ++A++SGY +NG AEEA +F K +
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454
Query: 317 -----GKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
G+ + + +I + LIDMYAKCG +DL+ F+ +D+V + M
Sbjct: 455 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 514
Query: 364 VGYGLHGLGEEGWVLF----------------------------------HHIRKHG--I 387
GYG+HGLG+E LF H+ HG +
Sbjct: 515 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 574
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTI 447
PR +HY +VDLL+R G+ + A++FI +MP+ + V ALL A ++
Sbjct: 575 TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRV-----------Y 623
Query: 448 RGIDEGEKTDK 458
+ ID G+K +
Sbjct: 624 KNIDLGKKVSR 634
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 138/525 (26%), Positives = 220/525 (41%), Gaps = 126/525 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
V PN T P VLKAC AL L G +H ++G F+ L D L+ R F
Sbjct: 95 VPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALID-LYIRCARFGPA 153
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+++++ +++ +L+ N Y A+ D++ ++G GL +
Sbjct: 154 ANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ--DRG----------GLRPNA 201
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+SL P + A+ G + + Y A Y+ ++E V++ T
Sbjct: 202 STLVSLL------PLLAQHGALFQGTSVHAYCLRA----------YLDQNE--EQVLIGT 243
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-----DGLLS 231
L+DMYAKC + A F ++ V SA+I G+ L + AF F +G+
Sbjct: 244 ALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCF 303
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL- 287
+AL L L G +H + K G+ + + L+S+ A T+
Sbjct: 304 LSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATML 363
Query: 288 -----------WNAMISGYAKNGYAEEAVKLFPKWMDYYI-------------------- 316
+ A++SGY +NG AEEA +F K +
Sbjct: 364 FDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAAL 423
Query: 317 --GKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
G+ + + +I + LIDMYAKCG +DL+ FD+ +D+V + M GY
Sbjct: 424 QHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGY 483
Query: 367 GLHGLGEEGWVLFHHIR------------------------------------KHGIEPR 390
G+HGLG+E LF ++ K+GI PR
Sbjct: 484 GIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR 543
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDLLAR G+ + A++FI +MP++ + V ALL A +I
Sbjct: 544 MEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRI 588
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 143/571 (25%), Positives = 244/571 (42%), Gaps = 139/571 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY----- 45
M + V N T VLKAC + L +G +VHG + GF +V Y
Sbjct: 148 MHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDE 207
Query: 46 ------LFDGLFDRTIVFLD-LYHLWSRTEW--SAFGSF-DGLLSN-EENEY--GTALDC 92
LFD + +R +V + L+ + + ++ A G F + +LS + NE+ + ++
Sbjct: 208 FLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNA 267
Query: 93 SCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR------------YQPNVTLR 137
L +GKI+HG++IKLG + ++ L+ + A QP++
Sbjct: 268 CTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSW 327
Query: 138 NAMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
NA+I+G + + E+A++L + + + K + +++ V+ L+DMY+KC ++ A
Sbjct: 328 NAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDAR 387
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSF-----DGLLSNEENEYGTALDCSCDL 247
M F+ +KD++ +A+I GY + + A F +G+ N + T L + L
Sbjct: 388 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFN-QTTLSTILKSTAGL 446
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTLWNA 290
+ + + VHG +K G SD+ + + + Y ++ + +
Sbjct: 447 QVVHVCRQVHGLSVKSG--FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 504
Query: 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV-------------------- 330
MI+ YA+ G EEA+KLF + D + + + ++N
Sbjct: 505 MITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG 564
Query: 331 ----------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
L++MYAKCGS+D A F ++ +V SAM G HG G + LF+
Sbjct: 565 FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFN 624
Query: 381 HIRKHGIEPRH------------------------------------QHYARVVDLLARA 404
+ K G+ P H +HYA ++DLL RA
Sbjct: 625 QMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRA 684
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G N A + + MP E SV ALL A +I
Sbjct: 685 GKINEAVELVNKMPFEANASVWGALLGAARI 715
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 166/371 (44%), Gaps = 69/371 (18%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------ 130
Y L C + L G +H + K GL + + LI+L + CR
Sbjct: 59 YSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESS 118
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGK- 167
+P++ +A+ISGYA+NG A+ F + D IGK
Sbjct: 119 EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ 178
Query: 168 -------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
S + +V V L+ MYAKC + FD +++VV +A+ Y ++
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDF 238
Query: 221 --SAFGSF-DGLLSN-EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDL 271
A G F + +LS + NE+ + ++ L +GKI+HG++IKLG + ++
Sbjct: 239 CGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANA 298
Query: 272 LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF---PKWMDYYI 316
L+ + A QP++ WNA+I+G + + E+A++L + + +
Sbjct: 299 LVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSL 358
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
K + +++ V+ L+DMY+KC ++ A M F+ +KD++ +A+ GY + E
Sbjct: 359 MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEAL 418
Query: 377 VLFHHIRKHGI 387
LF + K GI
Sbjct: 419 SLFVEMHKEGI 429
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 45/198 (22%)
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------ 281
Y L C + L G +H + K GL + + LI+L + CR
Sbjct: 59 YSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESS 118
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGK- 318
+P++ W+A+ISGYA+NG A+ F + D IGK
Sbjct: 119 EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ 178
Query: 319 -------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
S + +V V L+ MYAKC + FD +++VV +A+ Y
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDF 238
Query: 372 GEEGWVLFHHIRKHGIEP 389
E LF+ + GI+P
Sbjct: 239 CGEAVGLFYEMVLSGIKP 256
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 178/424 (41%), Gaps = 138/424 (32%)
Query: 140 MISGYAKNGYAEEAVKLF--------PKW---------------MDYYIG--------KS 168
MISG+ KN E+++++F P++ + +G K
Sbjct: 1 MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF 226
+ ++V + T LI +++KCG V++A + F KD++ +AMI G+ + + + F
Sbjct: 61 GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120
Query: 227 DGLLSNEE--------------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
LLS+ E + +G + C+C +HGF +KLG+ S +
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNC----------IHGFCVKLGIVSHSSVS 170
Query: 273 ISLTAV-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------- 309
+LT V CR + + WNAMISG +NG + A+ LF
Sbjct: 171 TALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVN 230
Query: 310 ----------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+W+ I + + +NV V+T LIDMYAKCGS+ +A
Sbjct: 231 PNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVAREL 290
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH--------------------------- 380
FD +K+ V +AM GYGLHG G+E LF+
Sbjct: 291 FDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLV 350
Query: 381 -------HIRKH--GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
H H G EP +HYA +VD+L RAG A +FI MP+E V ALL
Sbjct: 351 KEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLG 410
Query: 432 AWKI 435
A I
Sbjct: 411 ACMI 414
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 55/178 (30%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQPNVTLR------- 137
+G + C+C +HGF +KLG+ S + +LT V CR + R
Sbjct: 145 FGHSYLCNC----------IHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESA 194
Query: 138 -------NAMISGYAKNGYAEEAVKLFP------------------------------KW 160
NAMISG +NG + A+ LF +W
Sbjct: 195 EKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEW 254
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ I + + +NV V+T LIDMYAKCGS+ +A FD +K+ V +AMI GYGLH
Sbjct: 255 VHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLH 312
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 140/529 (26%), Positives = 216/529 (40%), Gaps = 128/529 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M + V + T V K+ +L S+ G ++HG I GF G + L
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGF-------GERNSVGNSLVA 238
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
++L + SA FD + + + + ++ E+G V M+ G+E++
Sbjct: 239 FYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLAT 298
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
++S+ A C ++L A+ K ++ R + NT L
Sbjct: 299 IVSVFAGCADSRLISLGRAVHCFGVKACFS--------------------REDRFCNT-L 337
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE---- 236
+DMY+KCG +D A + F + VV ++MI GY + G L E E
Sbjct: 338 LDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLA--GEAVKLFEEMEEEGISP 395
Query: 237 ----YGTALDCSCDLEFLEQGKIVH--------GFMI-----------KLGLELESDLLI 273
L+C L++GK VH GF I K G E++L+
Sbjct: 396 DVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVF 455
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------ 309
S V ++ WN +I GY+KN YA EA+ LF
Sbjct: 456 SEMRV----KDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACAS 511
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
+ + YI ++ Y ++ V L+DMYAKCG++ LA + FD KD+V + M
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVM 571
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEP----------------------------RHQ-- 392
GYG+HG G+E LF+ +R+ GIEP RH+
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631
Query: 393 ------HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA +VD+LAR G + A++FI NMPI ++ ALL +I
Sbjct: 632 IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRI 680
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 127/481 (26%), Positives = 207/481 (43%), Gaps = 83/481 (17%)
Query: 12 TPPLVLKACVALPSLL-MGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWS 70
T V AC P+L G VHG + G Y D ++V ++Y ++SR
Sbjct: 158 TFTFVFTACSRHPTLRGYGENVHGMVVKDG----YESDIFVGNSLV--NMYSIFSRMV-D 210
Query: 71 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 130
A FD + + + + + +G + G L+ +D+L
Sbjct: 211 AKRVFDEMPQRDVITWTSVV----------KGYAMRGEFYNEALQCFNDMLCHDEV---- 256
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+PN + +++S A G ++ KW+ YI K+ + ++T LIDMYAKCG +
Sbjct: 257 KPNEAVLVSILSACAHLGALDQG-----KWIHVYIDKNRILLSSNISTALIDMYAKCGRI 311
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--FGSFDGLLS---NEENEYGTALDCSC 245
D A FD +D++ ++MI G +H A +F +L+ ++ + C
Sbjct: 312 DCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGC 371
Query: 246 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------------QPNVTLWNA 290
L + +IVHG ++K G E + S+ +C + +V W +
Sbjct: 372 SHSGLVEEEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTS 431
Query: 291 MISGYAKNGYAEEAVKLF--------------------------------PKWMDYYIGK 318
++ GYAK+G + A F W+ YI K
Sbjct: 432 LLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDK 491
Query: 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW-- 376
R + ++T LIDMYAKCG +D A F+ +DV+ ++M G HGLG++
Sbjct: 492 IGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRG 551
Query: 377 --VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+L + GI P+ +HY +DLL RAGY A + + MP+E + + RALLSA +
Sbjct: 552 SSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASR 611
Query: 435 I 435
I
Sbjct: 612 I 612
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 22/186 (11%)
Query: 123 SLTAVC------RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
SLT C R PN + ++S A G ++ W+ YI K R + +
Sbjct: 446 SLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQG-----NWIHLYIDKIGIRQSSNI 500
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YGLHEWSAFGSFDGLLSNE 233
+T LIDMYAKCG +D A F+ +DV+ ++MI G +GL + + GS +L+N
Sbjct: 501 STALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRGS--SILANM 558
Query: 234 ENEYGTALDCS---CDLEFL-EQGKIVHGFMIKLGLELESDLLI--SLTAVCRYQPNVTL 287
E+ +G A C ++ L G + + + +E D++I +L + R NV L
Sbjct: 559 ESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNL 618
Query: 288 WNAMIS 293
+IS
Sbjct: 619 GEQIIS 624
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 134/493 (27%), Positives = 205/493 (41%), Gaps = 149/493 (30%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLRNAMISG 143
L +G+ +HG +I G + +++L A CR Q ++ N +++G
Sbjct: 158 LRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAG 217
Query: 144 YAKNGYAEEAVKL-------------------FPKWMDY---YIGKS----------EYR 171
YA+NG+A AV++ P D IG+S EY
Sbjct: 218 YAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM 277
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF--- 226
NV T ++D Y KCGSV A + F ++VV + MI GY + S AF +F
Sbjct: 278 VNVA--TAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKM 335
Query: 227 --DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM--IKLGLELES-DLLISLTAVCRY 281
+G+ + G AL +L LE+G+ VH + K+G ++ + LIS+ + C+
Sbjct: 336 LDEGVEPTNVSMMG-ALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKR 394
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
V WNAMI GYA+NG EA+ LF
Sbjct: 395 VDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA 454
Query: 309 ---------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
KW+ ++ NV V T LID +AKCG++ A FD ++ V+
Sbjct: 455 LADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITW 514
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRK----------------------------------- 384
+AM GYG +G G E LF+ ++
Sbjct: 515 NAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKE 574
Query: 385 -HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENM 443
+G+EP HY +VDLL RAG + A+KFI +MP++ ++V A+L A +I
Sbjct: 575 NYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIH------- 627
Query: 444 LQTIRGIDEGEKT 456
+ ++ GEKT
Sbjct: 628 ----KNVELGEKT 636
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 149/366 (40%), Gaps = 82/366 (22%)
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGK------ 167
L + M+ GYAKN +AV+ + + +D G+
Sbjct: 109 LYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMV 168
Query: 168 --SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
+ +++N+ T ++++YAKC ++ A F+R +D+V + ++ GY + ++
Sbjct: 169 ITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAV 228
Query: 226 FDGLLSNEENEYG------TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL---- 275
L E + + L DL+ L G+ +HG+ + G E ++ ++
Sbjct: 229 QVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTY 288
Query: 276 -------TAVCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI-------- 316
+A ++ NV WN MI GYA+NG +EEA F K +D +
Sbjct: 289 FKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMM 348
Query: 317 --------------GKSEYR--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
G+ +R +V V LI MY+KC VD+A F K
Sbjct: 349 GALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHK 408
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
VV +AM +GY +G E LF ++ H I+P V+ LA + A K+I
Sbjct: 409 TVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQA-KWI 467
Query: 415 MNMPIE 420
+ I
Sbjct: 468 HGLAIR 473
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 117/291 (40%), Gaps = 77/291 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY----- 45
MQ A P+ T VL A L +L +G +HG F GF L Y
Sbjct: 234 MQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGS 293
Query: 46 ------LFDGLFDRTIV----FLDLYHLWSRTEWSAFGSF-----DGLLSNEENEYGTAL 90
+F G+ R +V +D Y +E AF +F +G+ + G AL
Sbjct: 294 VRSARLVFKGMSSRNVVSWNTMIDGYAQNGESE-EAFATFLKMLDEGVEPTNVSMMG-AL 351
Query: 91 DCSCDLEFLEQGKIVHGFM--IKLGLELES-DLLISLTAVCRY------------QPNVT 135
+L LE+G+ VH + K+G ++ + LIS+ + C+ V
Sbjct: 352 HACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVV 411
Query: 136 LRNAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYI 165
NAMI GYA+NG EA+ LF KW+
Sbjct: 412 TWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLA 471
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
++ NV V T LID +AKCG++ A FD ++ V+ +AMI GYG
Sbjct: 472 IRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYG 522
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 116/278 (41%), Gaps = 55/278 (19%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
I K+ + N + T LI ++ K S+ A F+ K V+ M+ GY + A
Sbjct: 67 IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDA 126
Query: 223 FGSFDGLLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISL 275
++ + +E ++ L S + L +G+ +HG +I G + +++L
Sbjct: 127 VRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNL 186
Query: 276 TAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKL---------------- 307
A CR Q ++ WN +++GYA+NG+A AV++
Sbjct: 187 YAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITL 246
Query: 308 ---FPKWMDY---YIGKS----------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
P D IG+S EY NV T ++D Y KCGSV A + F
Sbjct: 247 VSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVA--TAMLDTYFKCGSVRSARLVFKGM 304
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
++VV + M GY +G EE + F + G+EP
Sbjct: 305 SSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEP 342
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 139/536 (25%), Positives = 219/536 (40%), Gaps = 124/536 (23%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T P VLKAC AL L VH G L LF T +D+Y +
Sbjct: 127 PNNYTFPFVLKACSALLDLRSARAVHCHAARAG-----LHADLFVST-ALVDVYAKCASF 180
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGF---MIKLGLELESDLLISL 124
+A F + + + + L G +HG I L ++ D +
Sbjct: 181 RHAA-TVFRRMPARDVVAWNAML----------AGYALHGKYSDTIACLLLMQDDHAPNA 229
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
+ + P + A+ G A + Y+ A L ++++ V+V T L+DMY
Sbjct: 230 STLVALLPLLAQHGALSQGRAVHAYSVRACSLH-----------DHKDGVLVGTALLDMY 278
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN-----EENEY 237
AKCG + A F+ ++ V SA++ G+ L AF F +L+
Sbjct: 279 AKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSV 338
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL------- 287
+AL +L L GK +H + K GL + + L+S+ A T
Sbjct: 339 ASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVV 398
Query: 288 -----WNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKSE 320
++A++SGY +NG A+EA ++F K + GK
Sbjct: 399 KDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCG 458
Query: 321 YRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ + ++ + LIDMYAKCG +DL+ FD +D+V + M GYG+HGLG
Sbjct: 459 HGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLG 518
Query: 373 EEGWVLFHHIR------------------------------------KHGIEPRHQHYAR 396
+E LF ++ K+GI PR +HY
Sbjct: 519 KEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIG 578
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM-----QQWENMLQTI 447
+VDLLAR G+ + A++FI MP++ + V ALL A ++ +Q +M+Q +
Sbjct: 579 MVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQL 634
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 148/597 (24%), Positives = 231/597 (38%), Gaps = 164/597 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIF----SLGFLVCYLFDGLFDRTIV 56
M A + P VL C + +G ++H +F SL VC L+ R
Sbjct: 204 MHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPN 263
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSN--EENEYGTAL-------------DCSCDLEFLE- 100
F+ ++S+ + SF+ L+S ++ AL DC L
Sbjct: 264 FVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSA 323
Query: 101 --------QGKIVHGFMIKLGLELESDL-----LISLTAVCR------------YQPNVT 135
+G+ +H ++IK G+ SD+ L+ L C NV
Sbjct: 324 CASNGALCKGEQLHSYVIKAGIS--SDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVV 381
Query: 136 LRNAMISGYAKNGYAEEAVKLF---------PKWMDY---------------------YI 165
L N M+ + K E+ ++F P Y +
Sbjct: 382 LWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQV 441
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAF 223
K+ ++ NV V +VLIDMYAK G +D A + + DVV +A+I GY H A
Sbjct: 442 IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEAL 501
Query: 224 GSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLT 276
F +L+ ++ + +A+ ++ L QG+ +H G + + L+SL
Sbjct: 502 KHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLY 561
Query: 277 AVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFP--------------- 309
A C L WN +ISG+A++GY E+A+K+F
Sbjct: 562 ARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFG 621
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
K + I K + +++ V+ LI YAKCGS++ A F +K
Sbjct: 622 SAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEK 681
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------------ 384
+ V +AM GY HG G E LF +++
Sbjct: 682 NDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYF 741
Query: 385 ------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HG+ P+ HYA VVDL++RAG+ + A KFI MPIE ++ R LLSA +
Sbjct: 742 ESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTV 798
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/404 (21%), Positives = 152/404 (37%), Gaps = 97/404 (24%)
Query: 99 LEQGKIVHGFMIKLGLELESDL-------------LISLTAVCRYQPNVTLR--NAMISG 143
L + K +HG ++KLG ES L L + V PN ++R + +ISG
Sbjct: 26 LVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISG 85
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSE------------------YRNNV----------- 174
+ + + + LF ++ + +E Y +
Sbjct: 86 FMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLC 145
Query: 175 --IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLL 230
I++ LI +YAK G + A FD KD V AMI G+ +E A F +
Sbjct: 146 SPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMH 205
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV- 285
+ + + L ++ + G+ +H + K G LE+ + +L + PN
Sbjct: 206 TAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFV 265
Query: 286 --------------TLWNAMISGYAKNGYAEEAVKLFPKWM-DY---------------- 314
+N++ISG A+ G+++ A++LF K DY
Sbjct: 266 SAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACA 325
Query: 315 -------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
Y+ K+ +++IV L+D+Y C + A F ++VV+ +
Sbjct: 326 SNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNV 385
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
M V +G E + +F ++ G+ P Y ++ G
Sbjct: 386 MLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 151/599 (25%), Positives = 228/599 (38%), Gaps = 168/599 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
M + V P VL AC + +G ++HG I G VC L+ R
Sbjct: 204 MHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGN 263
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSN--EENEYGTAL-------------DCSCDLEFLE- 100
+ ++S+ S++ L+S + AL DC L
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323
Query: 101 --------QGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVT 135
+GK +H ++IK+G+ SDL+I + + Y NV
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMS--SDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381
Query: 136 LRNAMISGYAKNGYAEEAVKLF---------PKWMDY---------------------YI 165
L N M+ Y + G E+ +F P Y +
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
KS ++ NV V +VLIDMYAK G +D A R ++DVV +AMI GY H+ F
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDL--FAE 499
Query: 226 FDGLLSNEENE--------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
L EN+ + +A+ ++ L QG+ +H G + + L+S
Sbjct: 500 ALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVS 559
Query: 275 LTAVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFP------------- 309
L A C + L WNA+ISG+A++G+ EEA+++F
Sbjct: 560 LYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFT 619
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
K + + K+ Y + + VLI +Y+KCGS++ A F
Sbjct: 620 FGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP 679
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK---------------------------- 384
+K+VV +AM GY HG G E LF +++
Sbjct: 680 EKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLS 739
Query: 385 --------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HG+ P+ +HY VVDLL RA A +FI MPIE + R LLSA +
Sbjct: 740 YFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTV 798
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 116/511 (22%), Positives = 200/511 (39%), Gaps = 131/511 (25%)
Query: 6 VAPNGCTPPLVLKACVALPS-LLMGPRVHGQIFSLGF----LVC------YLFDGLFDRT 54
V P+ T VL+AC + + ++H +I GF LVC Y +G D
Sbjct: 107 VTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLA 166
Query: 55 IVFLDLYHLWSRTEWSAFGSFDGLLSN-EENE-------------------YGTALDCSC 94
+ + L W A S GL N E+E + + L
Sbjct: 167 KLVFERLFLKDSVSWVAMIS--GLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACT 224
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR---------------NA 139
+E + G+ +HGF++K GL E+ + +L + N+ N+
Sbjct: 225 KIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNS 284
Query: 140 MISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSE 169
+ISG A+ G+++ A++LF K + Y+ K
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMG 344
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHE--WSAF 223
+++I+ L+D+Y KC ++ A +F T ++VV+ + M+V YG L E W
Sbjct: 345 MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFL 404
Query: 224 G-SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA-- 277
+GL+ N+ Y + L L L+ G+ +H +IK G + +LI + A
Sbjct: 405 QMQIEGLMPNQYT-YPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKH 463
Query: 278 ----VCR------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK--------- 318
R + +V W AMI+GY ++ EA+KLF + + I
Sbjct: 464 GELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAI 523
Query: 319 ---------------------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
S Y ++ + L+ +YA+CG A + F++ KD +
Sbjct: 524 SACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNI 583
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+A+ G+ G EE +F + + G+E
Sbjct: 584 SWNALISGFAQSGHCEEALQVFSQMNQAGVE 614
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 51/282 (18%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSN 232
+V LID+Y+K G VDLA + F+R KD V AMI G + E A F + +
Sbjct: 148 LVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKS 207
Query: 233 ----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL- 287
+ + L +E + G+ +HGF++K GL E+ + +L + N+
Sbjct: 208 AVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAA 267
Query: 288 --------------WNAMISGYAKNGYAEEAVKLFP------------------------ 309
+N++ISG A+ G+++ A++LF
Sbjct: 268 EQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASV 327
Query: 310 ------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
K + Y+ K +++I+ L+D+Y KC ++ A +F T ++VV+ + M
Sbjct: 328 GAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVML 387
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
V YG G E + +F ++ G+ P Y ++ G
Sbjct: 388 VAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 31/138 (22%)
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------GKSEYR---- 322
NV+ WN +ISG A + + LF + + GK+ ++
Sbjct: 74 SNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQ 133
Query: 323 -----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
++ +V LID+Y+K G VDLA + F+R KD V AM G +G
Sbjct: 134 IHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGR 193
Query: 372 GEEGWVLFHHIRKHGIEP 389
+E +LF + K + P
Sbjct: 194 EDEAILLFCQMHKSAVIP 211
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 172/391 (43%), Gaps = 91/391 (23%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+P+ TL N ++ + G +E K + +++ S +++++++ L+ MYA+CGS+
Sbjct: 71 EPDRTLYNTLLKRCTQLGKLKEG-----KLVHFHVLNSNFKHDLVIQNSLLFMYARCGSL 125
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN--EENEY--GTALDCS 244
+ A FD +D+V ++MI GY ++ + A F +LS+ E NE+ + + C
Sbjct: 126 EGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCC 185
Query: 245 CDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQ------------PNVTLWN 289
+ G+ +H K G L+ + A C Y N WN
Sbjct: 186 GYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWN 245
Query: 290 AMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKS 319
A+I+GYA+ G EEA+ LF KW+ ++ KS
Sbjct: 246 ALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKS 305
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------- 372
+ V L+ MYAK GS+ A FD+ + DVV ++M +GY HGLG
Sbjct: 306 SQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQF 365
Query: 373 ----------------------------EEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404
+EG F +RK+ IEP+ HYA +VDLL RA
Sbjct: 366 DEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRA 425
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G + A FI MPIE +++ ALL A K+
Sbjct: 426 GLLDQAKSFIEEMPIEPTVAIWGALLGASKM 456
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 47/250 (18%)
Query: 201 LDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
+D ++R ++ GLH G L + Y T L L L++GK+VH +
Sbjct: 43 IDDRNLLRPSLNSKTGLHVLDLIDC--GSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHV 100
Query: 261 I----KLGLELESDLLI------SLTAVCRY-----QPNVTLWNAMISGYAKNGYAEEAV 305
+ K L +++ LL SL R ++ W +MI+GYA+N A +A+
Sbjct: 101 LNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDAL 160
Query: 306 KLFPKWM----------------------DYYIGKSEY--------RNNVIVNTVLIDMY 335
LFP+ + Y G+ + +NV V + L+DMY
Sbjct: 161 LLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMY 220
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA 395
A+CG + A + FD+ K+ V +A+ GY G GEE LF +++ G P Y+
Sbjct: 221 ARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYS 280
Query: 396 RVVDLLARAG 405
++ + G
Sbjct: 281 ALLSSCSSMG 290
>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
Length = 1008
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/528 (23%), Positives = 214/528 (40%), Gaps = 131/528 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIF----------SLGFLVCYLFDGL 50
MQ P+ + +L AC L ++L+G H F S L Y G
Sbjct: 449 MQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGK 508
Query: 51 FDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMI 110
+ L + W+ S G + N + + AL L ++Q K
Sbjct: 509 LSSSFKLFQKMPLRNAISWNTLIS--GCVHNGDTKKAVAL-----LHKMQQEK------- 554
Query: 111 KLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 170
+EL+ LIS+ +CR N +I G +GYA K+ +
Sbjct: 555 ---MELDLVTLISIIPICRVAEN------LIQGMTLHGYAI---------------KTGF 590
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDG 228
+V + LI MY CG ++ F+ + +V +A+I GY H + SF
Sbjct: 591 ACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQ 650
Query: 229 LL-SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQ---- 282
++ ++ Y T L+ L QGK +H F ++ G+ +E+ ++ SL ++ R++
Sbjct: 651 MIREGQKPNYVTLLNLLPSCRTLLQGKSIHAFAVRTGVIVETPIITSLISMYARFENINS 710
Query: 283 ----------PNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY--------- 314
++ LWNA++S Y + A+E+V F P ++ +
Sbjct: 711 FIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQ 770
Query: 315 ------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y+ + + +++++ LID++A+CG++ +A F+ KD V S M
Sbjct: 771 LSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTM 830
Query: 363 TVGYGLHGLGE-----------------------------------EGWVLFHHIRKHGI 387
GYGLHG E +GW++F+ + + G+
Sbjct: 831 INGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVEEGV 890
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R +HYA +VDLL R G N A+ F+ +P + +S+ +LL A I
Sbjct: 891 PRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLLGACII 938
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 148/322 (45%), Gaps = 60/322 (18%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
++ + N+++ T L+D YAK G + A + D+ D+V +A+I GY L+ + F
Sbjct: 183 RTSFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDK-EVF 241
Query: 227 DGLLSNEE-------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLT 276
+ L E + + + + ++ L+ GK +HGF++K G E + LIS+
Sbjct: 242 EVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMY 301
Query: 277 A------VCR------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------ 312
A + R + NV +WN+MIS YA+N + EA K+F + +
Sbjct: 302 AGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFV 361
Query: 313 ----------DYYIGKS------EYR--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
+++ GKS +YR + + V T L+ MYAK G ++ A F + +
Sbjct: 362 SIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRR 421
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR-----AGYSNH 409
+++ ++M GYG +GL E F ++ G +P ++ ++ G + H
Sbjct: 422 NLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAH 481
Query: 410 AFKFIMNMPIELRLSVRRALLS 431
AF F + L++ ALL+
Sbjct: 482 AFSF--RKEFDSNLNISNALLA 501
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 142/579 (24%), Positives = 226/579 (39%), Gaps = 146/579 (25%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF---LVC-------YLFDGLFDRTIVFLDLY 61
T P V+KAC AL ++ + VH + F LV Y G + + LD
Sbjct: 157 TFPFVIKACTALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVKARLVLDKI 216
Query: 62 HLWSRTEWSAFGS------FD-------------GLLSNEENEYGTALDCSCDLEFLEQG 102
W+A S FD GL N + + + ++ L+ G
Sbjct: 217 SQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVST-FASIIPLCTRMKCLDIG 275
Query: 103 KIVHGFMIKLGL---ELESDLLISLTA------VCR------YQPNVTLRNAMISGYAKN 147
K +HGF++K G E + LIS+ A + R + NV + N+MIS YA+N
Sbjct: 276 KSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQN 335
Query: 148 GYAEEAVKLFPKWM----------------------DYYIGKS------EYR--NNVIVN 177
+ EA K+F + + +++ GKS +YR + + V
Sbjct: 336 QKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVA 395
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS--AFG--SFDGLL 230
T L+ MYAK G ++ A F + ++++ ++MI GY GL E S AF F+G
Sbjct: 396 TALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFD 455
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP------- 283
+ + CS LE + GK H F + E +S+L IS + Y
Sbjct: 456 PDAISIVNILSACS-KLEAILLGKAAHAFSFR--KEFDSNLNISNALLAFYSDCGKLSSS 512
Query: 284 ----------NVTLWNAMISGYAKNGYAEEAVKLFPKW---------------------- 311
N WN +ISG NG ++AV L K
Sbjct: 513 FKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVA 572
Query: 312 --------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+ Y K+ + +V + LI MY CG ++ F+ + +V +A+
Sbjct: 573 ENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALI 632
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-----GYSNHAFKFIMNMP 418
GY H L E F + + G +P +Y +++LL G S HAF +
Sbjct: 633 TGYRFHYLQNEVMASFCQMIREGQKP---NYVTLLNLLPSCRTLLQGKSIHAFAVRTGVI 689
Query: 419 IELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTD 457
+E + +L+S + ++EN+ I + G K D
Sbjct: 690 VE--TPIITSLISMYA----RFENINSFIFLFEMGGKED 722
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 149/585 (25%), Positives = 238/585 (40%), Gaps = 171/585 (29%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLV--------------C-------YLFDGLFDRT 54
VL+ C L SL G RVH I S G + C +FDG+ +
Sbjct: 63 VLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDK 122
Query: 55 IVFLDLYHLWSRTEWSAFGSFD---GLLS--NEENEYGTALDCSCDLE-FLEQGKI---- 104
I +L +E++ G++ GL E G + +C L+ F K+
Sbjct: 123 IFLWNLL----MSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECK 178
Query: 105 -VHGFMIKLGLELESDLLISLTAV---CR------------YQPNVTLRNAMISGYAKNG 148
VHG+++KLG + ++ SL A C +V N+MISG NG
Sbjct: 179 RVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNG 238
Query: 149 YAEEAVKLFPKWMDY------------------------------YIGKSEYRNNVIVNT 178
++ ++ F + ++ Y K+ + V+ N
Sbjct: 239 FSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNN 298
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD-----GLL 230
L+DMY+KCG+++ A F + + +V +++I + GLH + A G FD GL
Sbjct: 299 TLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLH-YEAIGLFDEMQSKGLR 357
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIK--LGLELE-SDLLISLTAVCRYQ----- 282
+ C+C L++G+ VH + K +G L S+ L+++ A C
Sbjct: 358 PDIYAVTSVVHACACS-NSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANL 416
Query: 283 -------PNVTLWNAMISGYAKNGYAEEAVKLF--------------------------- 308
N+ WN MI GY++N EA++LF
Sbjct: 417 IFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAAL 476
Query: 309 --PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ + +I + Y +++ V L+DMY KCG + LA FD KD+++ + M GY
Sbjct: 477 EKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGY 536
Query: 367 GLHGLGEE-----------------------------------GWVLFHHIRKH-GIEPR 390
G+HG G+E GW LF ++ IEP+
Sbjct: 537 GMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPK 596
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDLL R+G + A+KFI MPI+ ++ ALLS +I
Sbjct: 597 LEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRI 641
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 124/299 (41%), Gaps = 75/299 (25%)
Query: 92 CSCDLEFLEQGKIVHGFMIK--LGLELE-SDLLISLTAVCRYQ------------PNVTL 136
C+C L++G+ VH + K +G L S+ L+++ A C N+
Sbjct: 370 CACS-NSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVS 428
Query: 137 RNAMISGYAKNGYAEEAVKLF-----------------------------PKWMDYYIGK 167
N MI GY++N EA++LF + + +I +
Sbjct: 429 WNTMIGGYSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILR 488
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGS 225
Y +++ V L+DMY KCG + LA FD KD+++ + MI GYG+H + A +
Sbjct: 489 KGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAIST 548
Query: 226 FDGL----LSNEENEYGTALDCSCDLEFLEQG-KIVHGFMIKLGLE--LES-----DLLI 273
F+ + + EE+ + + L L++G K+ + +E LE DLLI
Sbjct: 549 FEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLI 608
Query: 274 SLTAVCR---------YQPNVTLWNAMISGYA-------KNGYAEEAVKLFPKWMDYYI 316
+ R +P+ +W A++SG AE +L P+ YY+
Sbjct: 609 RSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYV 667
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 83/219 (37%), Gaps = 47/219 (21%)
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR--------- 280
E N Y + L +L+ LE GK VH + G+ ++ L L+ + C
Sbjct: 56 ELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIF 115
Query: 281 ---YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY---------------- 321
+ LWN ++S YAK G E+V LF K + I Y
Sbjct: 116 DGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVR 175
Query: 322 ---------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
N +VN+ LI Y KCG V+ A + FD D+DVV ++M G
Sbjct: 176 ECKRVHGYVLKLGFGSYNAVVNS-LIAAYFKCGEVESARILFDELSDRDVVSWNSMISGC 234
Query: 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
++G G F + G++ V+ A G
Sbjct: 235 TMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVG 273
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 153/592 (25%), Positives = 230/592 (38%), Gaps = 160/592 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHG----QIFSLGFLVCYLFDGLFDRTIV 56
M + V P VL AC + +G ++HG Q FSL VC L+ R
Sbjct: 262 MHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGN 321
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENE----------YGTALDC-------------S 93
F+ +++ S++ L+S + LDC +
Sbjct: 322 FIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSA 381
Query: 94 CD-LEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR------------YQPNVTLR 137
C + L GK H + IK G+ + L L+ L C NV L
Sbjct: 382 CSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLW 441
Query: 138 NAMISGYAKNGYAEEAVKLF---------PKWMDY---------------------YIGK 167
N M+ Y E+ K+F P Y + K
Sbjct: 442 NVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLK 501
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGS 225
+ ++ NV V++VLIDMYAK G +D A F R +KDVV +AMI GY HE A
Sbjct: 502 TGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNL 561
Query: 226 F----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
F D + ++ + +A+ ++ L QG+ +H G + + L+SL A
Sbjct: 562 FKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYAR 621
Query: 279 CR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------- 309
C + + WN++ISG+A++G+ EEA+ LF
Sbjct: 622 CGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPA 681
Query: 310 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
K + I K+ + + V+ VLI +YAKCG++D A F +K+
Sbjct: 682 VSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNE 741
Query: 357 VMRSAMTVGYGLHGLG-----------------------------------EEGWVLFHH 381
+ +AM GY HG G +EG F
Sbjct: 742 ISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQS 801
Query: 382 IRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+R+ HG+ P+ +HYA VVDLL R+G + A +F+ MPI+ V R LLSA
Sbjct: 802 MREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSA 853
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 123/280 (43%), Gaps = 51/280 (18%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFD 227
Y N++ V LID+Y K G ++ A FD +D V AM+ G E A F
Sbjct: 201 YENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFC 260
Query: 228 GLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISL-TAVC 279
+ ++ + + L +EF + G+ +HG ++K G LE+ + L++L + +
Sbjct: 261 QMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLG 320
Query: 280 RYQPNVTLWNAM-----------ISGYAKNGYAEEAVKLFP------------------- 309
+ P ++NAM ISG ++ GY+++A++LF
Sbjct: 321 NFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLS 380
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K Y K+ +++I+ L+D+Y KC + A FF T ++VV+
Sbjct: 381 ACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVL 440
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+ M V YGL E + +F ++ GIEP Y ++
Sbjct: 441 WNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSIL 480
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 17/155 (10%)
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
Y N++ V LID+Y K G ++ A FD +D V AM G G EE +LF
Sbjct: 201 YENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFC 260
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGY---SNHAFKFIMNMPIELRLSVRRALLSAWK--- 434
+ G+ P ++ V+ + + ++ L V AL++ +
Sbjct: 261 QMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLG 320
Query: 435 --IPMQQWEN-MLQT--------IRGIDEGEKTDK 458
IP +Q N MLQ I G+ + +DK
Sbjct: 321 NFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDK 355
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 170/422 (40%), Gaps = 117/422 (27%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------ 166
+ + L N M+SG KN +EA+ +F + IG
Sbjct: 169 ERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMG 228
Query: 167 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
K + ++ V T L +Y+KCG ++ A + F + D+V +AMI GY +
Sbjct: 229 IQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNE 288
Query: 221 --SAFGSFDGLLSNEENEYGTALDCSCDLEF----LEQGKIVHGFMIKLGLELESDLLIS 274
S+ F LL + E +++ + F L + +HGF K G+ S + +
Sbjct: 289 TESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTA 348
Query: 275 LTAVCR---------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP---------- 309
LT V + ++ WNAMISGYA+NG E+A+ LF
Sbjct: 349 LTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPN 408
Query: 310 --------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
KW+ I + + +N+ V+T LIDMYAKCGS+ A F
Sbjct: 409 PVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFS 468
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH---------------------------- 381
+K+ V +AM GYGLHG G E LF+
Sbjct: 469 MMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVRE 528
Query: 382 --------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ HG EP +HYA +VDLL RAG + A FI MP+E V ALL A
Sbjct: 529 GDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGAC 588
Query: 434 KI 435
I
Sbjct: 589 MI 590
>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 852
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 203/448 (45%), Gaps = 101/448 (22%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------- 130
G+ L L +++G+++HG+++K G E + L+ + A CR+
Sbjct: 216 GSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAF 275
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------------- 170
+ N L AM++GYA+NG +A++ F + +++
Sbjct: 276 NKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGE 335
Query: 171 -------RN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH- 218
RN N V + L+DMYAKCG + A + D DVV ++MIVG H
Sbjct: 336 QVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHG 395
Query: 219 -EWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESD 270
E A F + + + + + L+C C + ++ GK VH +IK G E L S+
Sbjct: 396 FEEEAILLFKKMHARNMKIDHYTFPSVLNC-CIVGRID-GKSVHCLVIKTGFENYKLVSN 453
Query: 271 LLISLTAV-----CRY-------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------ 312
L+ + A C Y + +V W ++++GY +NG EE++K F
Sbjct: 454 ALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSP 513
Query: 313 DYYI----------------GKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFF 348
D +I GK + R+++ VN L+ MYAKCG +D A F
Sbjct: 514 DQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIF 573
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYS 407
+DV+ +A+ VGY +G G + F ++K +GIEP +HYA ++DL R G
Sbjct: 574 VSMHVRDVITWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHYACMIDLFGRLGKL 633
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ A + + M ++ +V +ALL+A ++
Sbjct: 634 DEAKEILNQMDVKPDATVWKALLAACRV 661
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 114/477 (23%), Positives = 193/477 (40%), Gaps = 110/477 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFD------- 52
M++ P+ T +L+ C AL + G +HG + GF Y+ GL D
Sbjct: 203 MRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRH 262
Query: 53 ---RTIVFLDL------YHLWSR--------------TEWSAFGSFDGLLSNEENEYGTA 89
I+F L + LW+ E+ + +G+ SN+ + +
Sbjct: 263 ISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFT-FPSI 321
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC-------RYQPN-----V 134
L + G+ VHG +++ G + L+ + A C R N V
Sbjct: 322 LTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDV 381
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKW------MDYY----------------------IG 166
N+MI G ++G+ EEA+ LF K +D+Y +
Sbjct: 382 VSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVI 441
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAF 223
K+ + N +V+ L+DMYAK ++ A F++ +KDV+ ++++ GY G HE S
Sbjct: 442 KTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLK 501
Query: 224 GSFDGLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
D +S ++ + L +L LE GK VH IKLGL ++ L+++ A
Sbjct: 502 TFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYA 561
Query: 278 VC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY---IGKSEYR 322
C + +V W A+I GYA+NG +++K F + Y G Y
Sbjct: 562 KCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHY- 620
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDR-TLDKDVVMRSAMTVGYGLHG---LGEEG 375
+ID++ + G +D A ++ + D + A+ +HG LGE
Sbjct: 621 ------ACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGERA 671
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/439 (22%), Positives = 182/439 (41%), Gaps = 103/439 (23%)
Query: 75 FDGLLSN-EENEYGTALDCSCDLEFLEQGKIV----HGFMIKLGLELESDLLISLTA--- 126
++G+L N E AL SCD +++ F+I LG + + L + L+A
Sbjct: 31 YEGILYNINTEESSIALRNSCDSHLDNDLRLILFTLSLFLIPLGYYISTALSVLLSASPS 90
Query: 127 -----------------VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 169
+ ++ N +++G +K+G ++A +LF K + + E
Sbjct: 91 LNEDSDDTGVQQVVMHNIADSYQSIFHSNQLLNGLSKSGQIDDARELFDKMLQ----RDE 146
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFD 227
Y N +V+ YA G + A F+ + + S++I GY + AF F
Sbjct: 147 YTWNTMVSG-----YANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFK 201
Query: 228 --GLLSNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR 280
L + ++Y G+ L L +++G+++HG+++K G E + L+ + A CR
Sbjct: 202 RMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCR 261
Query: 281 Y--------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY----- 321
+ + N LW AM++GYA+NG +A++ F + +++
Sbjct: 262 HISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSI 321
Query: 322 ---------------------RN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
RN N V + L+DMYAKCG + A + D DV
Sbjct: 322 LTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDV 381
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD--------------LLA 402
V ++M VG HG EE +LF + ++ H + V++ L+
Sbjct: 382 VSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVI 441
Query: 403 RAGYSNHAFKFIMNMPIEL 421
+ G+ N +K + N +++
Sbjct: 442 KTGFEN--YKLVSNALVDM 458
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 167/396 (42%), Gaps = 97/396 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+P+ T+ N ++ G ++ K + ++ S++RN++++ ++ MYAKCGS+
Sbjct: 88 EPDRTIYNKLLKRCTMLGKLKQG-----KLVHTHLMNSKFRNDLVIKNSILFMYAKCGSL 142
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF----------DGLLSNEENEYGTA 240
++A FD KDVV ++MI GY +++ + DGL NE +
Sbjct: 143 EIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNE-FALSSL 201
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNV 285
+ C L GK +HG K G + L+ + A C N
Sbjct: 202 VKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNE 261
Query: 286 TLWNAMISGYAKNGYAEEAVKLF------------------------------PKWMDYY 315
WNA+ISG+A+ G EEA+ LF KW+ +
Sbjct: 262 VSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAH 321
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
+ KS + V L+ MYAK G++ A FDR + DVV ++M +GY HGLG+E
Sbjct: 322 MMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEA 381
Query: 376 WVLFHHI------------------------------------RKHGIEPRHQHYARVVD 399
LF + +K+G+EP+ HY VVD
Sbjct: 382 VELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVD 441
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L RAG + A FI MPIE ++ ALL A K+
Sbjct: 442 LFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKM 477
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 73/188 (38%), Gaps = 46/188 (24%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY-- 130
DGL NE + + C L GK +HG K G + L+ + A C
Sbjct: 189 DGLRPNE-FALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELR 247
Query: 131 ----------QPNVTLRNAMISGYAKNGYAEEAVKLF----------------------- 157
N NA+ISG+A+ G EEA+ LF
Sbjct: 248 ESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSS 307
Query: 158 -------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
KW+ ++ KS + V L+ MYAK G++ A FDR + DVV ++
Sbjct: 308 TTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNS 367
Query: 211 MIVGYGLH 218
M++GY H
Sbjct: 368 MLIGYAQH 375
>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
Length = 673
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 205/510 (40%), Gaps = 120/510 (23%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
L LKACV G R+H + G ++ + L D DL + A
Sbjct: 128 LALKACVRSADFRYGRRLHCDVVKAGGADGFVMNSLVDMYAKAGDLEN--------ARKV 179
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 134
FD + + + L S E+G ++ M + + ++S+ A C
Sbjct: 180 FDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAAC------ 233
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
AM+ G + +W+ + K N ++ L+DMYAKC V+ A
Sbjct: 234 ----AMLGGLHQG-----------RWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDAR 278
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEWSA-------FGSFDGLLSNEENEYGTALDCSCDL 247
FD D+V+ +AMIVGY ++ F ++ N T + S L
Sbjct: 279 RVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVT-IATVISASAQL 337
Query: 248 EFLEQGKIVHGFMIKLGLELESDL----LISLTAVCRYQP------------NVTLWNAM 291
L G+ VH +KLG +ESD+ L+ + A C+ P +V WN+M
Sbjct: 338 RHLPLGRSVHAIGVKLG-TMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSM 396
Query: 292 ISGYAKNGYAEEAVKLFPKW----------------------MDYYIGKS--------EY 321
++GY++NG A E++ LF + D +IGK +
Sbjct: 397 MAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAF 456
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+N+ VNT L+++Y+KC + A F+ D++ V SAM GYG+ G LF+
Sbjct: 457 MSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNE 516
Query: 382 IRKHGIEP-----------------------------RH-------QHYARVVDLLARAG 405
+ K I P RH +HYA +VD++ARAG
Sbjct: 517 MLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAG 576
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A +FI NMPI+ +SV + L K+
Sbjct: 577 NLEEALEFIQNMPIKAGISVWGSFLHGCKL 606
>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
[Vitis vinifera]
Length = 836
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 175/420 (41%), Gaps = 121/420 (28%)
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKSEY- 170
V LRNAMIS + NG A +A+ L+ K Y G++ +
Sbjct: 310 VELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHA 369
Query: 171 -------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--S 221
++NV + + L+ MY KCGS + A F ++DVV +MI G+ +
Sbjct: 370 EVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKD 429
Query: 222 AFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A F + + + + + + LE +E G ++HGF IK GLE SD+ ++ +
Sbjct: 430 ALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLE--SDVFVACSL 487
Query: 278 VCRYQ---------------PNVTL--WNAMISGYAKNGYAEEAVKLFPKWMDY------ 314
V Y PN L WN+MIS Y+ NG E ++ L P+ + +
Sbjct: 488 VDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDS 547
Query: 315 ------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
Y + + +++ V LIDMY KCG + A + F+
Sbjct: 548 VSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFEN 607
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-------------------------- 384
+++V ++M GYG HG EE LF +++
Sbjct: 608 MPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEG 667
Query: 385 ----------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+G+EPR +HYA VVDLL RAG + A+ FI MPI+ SV LL A +
Sbjct: 668 LNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACR 727
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 122/534 (22%), Positives = 215/534 (40%), Gaps = 128/534 (23%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLG----------FLVCYLFDGLFDRTIVFLDLY 61
T P +LK C +L +L G +H I ++G + Y+ GL + D
Sbjct: 57 TFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKM 116
Query: 62 HLWSR------TEWSAFGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGL 114
SR T W+ DG E G A C +L + G+ +HG++I+
Sbjct: 117 S-ESRDSAPDITVWNPV--IDGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMF 173
Query: 115 E----LESDLLISLTAVCR------------YQPNVTLRNAMISGYAKNGYAEEAVKL-- 156
E LE+ L+ ++ R + N+ N MI G+ +NG E++++L
Sbjct: 174 EGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYS 233
Query: 157 ----------------------------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
F + + + K ++++ V T L+ MYAK G
Sbjct: 234 LAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSG 293
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSFDGLLSNE---ENEYGTALD 242
SV+ A FD+ LDK+V +R+AMI +G G + A G ++ + + E ++ ++L
Sbjct: 294 SVEDAKKVFDQVLDKEVELRNAMISAFIGNG-RAYDALGLYNKMKAGETPVDSFTISSLL 352
Query: 243 CSCD-LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPN 284
C + + G+ VH +IK ++S++ I + Y + +
Sbjct: 353 SGCSVVGSYDFGRTVHAEVIK--RSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERD 410
Query: 285 VTLWNAMISGYAKNGYAEEAVKLF-----------PKWMDYYIG---------------- 317
V W +MI+G+ +N ++A+ LF M I
Sbjct: 411 VVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHG 470
Query: 318 ---KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
K ++V V L+DMY+K G + A M F +K++V ++M Y +GL E
Sbjct: 471 FAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEM 530
Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARA-----GYSNHAFKFIMNMPIELRL 423
L I +HG V+ ++ G + HA++ + +P +L++
Sbjct: 531 SINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQV 584
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 92/414 (22%), Positives = 160/414 (38%), Gaps = 98/414 (23%)
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
L S+T SA L+ + + + L L L G+ +H ++ +GL+ SD
Sbjct: 41 ELHSKTPHSA-------LTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQ--SDPY 91
Query: 122 ISLTAVCRY----------------------QPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
I+ + + Y P++T+ N +I GY K G+ EE + F +
Sbjct: 92 IATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCR 151
Query: 160 WMDY-----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVM 207
+ YI ++ + + + T LI MY+ C A F + ++ ++V
Sbjct: 152 MQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVA 211
Query: 208 RSAMIVGY---GLHEWSAFGSFDGLLSNE-----ENEYGTALDCSCDLEFLEQGKIVHGF 259
+ MI G+ G+ W L NE + A E L+ G+ VH
Sbjct: 212 WNVMIGGFVENGM--WEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCD 269
Query: 260 MIKLGLELESDLLISLTAVCRYQ---------------PNVTLWNAMISGYAKNGYAEEA 304
+IK+ + + + SL + V L NAMIS + NG A +A
Sbjct: 270 VIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDA 329
Query: 305 VKLFPKWM----------------------DYYIGKSEY--------RNNVIVNTVLIDM 334
+ L+ K Y G++ + ++NV + + L+ M
Sbjct: 330 LGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTM 389
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
Y KCGS + A F ++DVV +M G+ + ++ LF + K G++
Sbjct: 390 YYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVK 443
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 127/514 (24%), Positives = 218/514 (42%), Gaps = 142/514 (27%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL----VCYLFDGLFDRTIVFLDLYHLW 64
+G T PLV++AC + S ++G +HG + +GF V G++ + D HL+
Sbjct: 41 DGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLF 100
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
R ++ S++ ++S Y DC+ LE ++ +ES+ +
Sbjct: 101 DRMSVRSYISWNTMVS----AYAFNYDCNGALEIFQR--------------MESEGM--- 139
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
+PN+ ++IS YA++G+ EEA++LF + E + V+I +
Sbjct: 140 ------EPNLVTWTSLISSYARSGWHEEAMELFGL---MRMKGVEVSGEAL--AVVISIC 188
Query: 185 AKCGSVDLAPMFFDRTL----DKDVVMRSAMIVGYGLH-----EWSAF--------GSFD 227
A G+ A + + + ++ ++SA+I YG H W+ F S++
Sbjct: 189 ADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWN 248
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
L+++ + A C LE Q LE D R +PNV
Sbjct: 249 ALITS----HAEAGLCDEALEIFSQ------------LERSGD-------CPRLRPNVVS 285
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDY------------------------------YIG 317
W+A+I G+A G +EA++LF + ++
Sbjct: 286 WSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVV 345
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG----- 372
++ NN++V L++MYAKCG + M F++T KD++ ++M GYG+HGLG
Sbjct: 346 RAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALE 405
Query: 373 ------------------------------EEGWVLFHH-IRKHGIEPRHQHYARVVDLL 401
EG LF ++K+ IEP+ +HYA +VDLL
Sbjct: 406 TFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLL 465
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG A + + NMP+ V ALL++ ++
Sbjct: 466 GRAGLLREASEIVKNMPVAPNACVWGALLNSCRM 499
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 195/472 (41%), Gaps = 131/472 (27%)
Query: 97 EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLRNAMI 141
E LEQGK VH M ++G + E ++S+ C NV AMI
Sbjct: 326 EALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385
Query: 142 SGYAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYR 171
+G+A++G +EA F K ++ +I ++ Y
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL 229
++ V T L+ MYAKCGS+ A F++ ++VV +AMI Y HE +A +F L
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505
Query: 230 LSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC--- 279
L + + + L+ + LE GK VH ++K GLE + S+ L+S+ C
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL 565
Query: 280 ---------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+ ++ WN +I+G+ ++G + A F
Sbjct: 566 MSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+ + I ++ + +V+V T LI MY KCGS++ A F + K+V +
Sbjct: 626 ASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWT 685
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------------- 386
+M GY HG G+E LF+ +++ G
Sbjct: 686 SMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEF 745
Query: 387 -IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM 437
IEPR +HY +VDL RAG N A +FI+ M +E V ALL A ++ +
Sbjct: 746 NIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL 797
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 126/278 (45%), Gaps = 53/278 (19%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEW 220
+I KS + ++ + LI+MYAKCG+ A FD +KDV + ++ GY GL+E
Sbjct: 135 HIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE- 193
Query: 221 SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
AF + ++ + ++ + + L+ D +++G+ ++ ++K G + + LI
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253
Query: 274 SLTAVCRYQPNVT------------LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE- 320
++ C + T W +MI+G A++G ++A LF + + + +
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKV 313
Query: 321 -----------------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ + V T ++ MY KCGS++ A FD
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLV 373
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
++VV +AM G+ HG +E ++ F+ + + GIEP
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP 411
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 65/257 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMD------------------------------YYIGK 167
N ++ GY ++G EEA KL + + I K
Sbjct: 180 NLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+ + ++ V T LI+M+ KCG + A FD +D+V ++MI G H F
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH--GRFKQAC 297
Query: 228 GLLSNEENE--------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
L E E + + L E LEQGK VH M ++G + E
Sbjct: 298 NLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE----------- 346
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ + A++S Y K G E+A+++F D G+ NV+ T +I +A+ G
Sbjct: 347 -----IYVGTAILSMYTKCGSMEDALEVF----DLVKGR-----NVVSWTAMIAGFAQHG 392
Query: 340 SVDLAPMFFDRTLDKDV 356
+D A +FF++ ++ +
Sbjct: 393 RIDEAFLFFNKMIESGI 409
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
+I KS + ++ + LI+MYAKCG+ A FD +KDV + + GY HGL EE
Sbjct: 135 HIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEE 194
Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARA 404
+ L + + ++P + + +++ A A
Sbjct: 195 AFKLHEQMVQDSVKPDKRTFVSMLNACADA 224
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 132/510 (25%), Positives = 212/510 (41%), Gaps = 126/510 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
V PN T P VLKAC AL L G +H ++G F+ L D L+ R F
Sbjct: 95 VPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALID-LYIRCARFGPA 153
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+++++ +++ +L+ N Y A+ D++ ++G GL +
Sbjct: 154 ANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ--DRG----------GLRPNA 201
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+SL P + A+ G + + Y A Y+ ++E V++ T
Sbjct: 202 STLVSLL------PLLAQHGALFQGTSVHAYCLRA----------YLDQNE--EQVLIGT 243
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-----DGLLS 231
L+DMYAKC + A F ++ V SA+I G+ L + AF F +G+
Sbjct: 244 ALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCF 303
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL- 287
+AL L L G +H + K G+ + + L+S+ A T+
Sbjct: 304 LSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATML 363
Query: 288 -----------WNAMISGYAKNGYAEEAVKLFPKWMDYYI-------------------- 316
+ A++SGY +NG AEEA +F K +
Sbjct: 364 FDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAAL 423
Query: 317 --GKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
G+ + + +I + LIDMYAKCG +DL+ FD+ +D+V + M GY
Sbjct: 424 QHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGY 483
Query: 367 GLHGLGEEGWVLFHHIR------------------------------------KHGIEPR 390
G+HGLG+E LF ++ K+GI PR
Sbjct: 484 GIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR 543
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+HY +VDLLAR G+ + A++FI +MP++
Sbjct: 544 MEHYICMVDLLARGGFLDEAYQFIQSMPLK 573
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 195/472 (41%), Gaps = 131/472 (27%)
Query: 97 EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLRNAMI 141
E LEQGK VH M ++G + E ++S+ C NV AMI
Sbjct: 326 EALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385
Query: 142 SGYAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYR 171
+G+A++G +EA F K ++ +I ++ Y
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL 229
++ V T L+ MYAKCGS+ A F++ ++VV +AMI Y HE +A +F L
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505
Query: 230 LSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC--- 279
L + + + L+ + LE GK VH ++K GLE + S+ L+S+ C
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL 565
Query: 280 ---------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+ ++ WN +I+G+ ++G + A F
Sbjct: 566 MSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+ + I ++ + +V+V T LI MY KCGS++ A F + K+V +
Sbjct: 626 ASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWT 685
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------------- 386
+M GY HG G+E LF+ +++ G
Sbjct: 686 SMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEF 745
Query: 387 -IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM 437
IEPR +HY +VDL RAG N A +FI+ M +E V ALL A ++ +
Sbjct: 746 NIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL 797
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 126/278 (45%), Gaps = 53/278 (19%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEW 220
+I KS + ++ + LI+MYAKCG+ A FD +KDV + ++ GY GL+E
Sbjct: 135 HIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE- 193
Query: 221 SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
AF + ++ + ++ + + L+ D +++G+ ++ ++K G + + LI
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253
Query: 274 SLTAVCRYQPNVT------------LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE- 320
++ C + T W +MI+G A++G ++A LF + + + +
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKV 313
Query: 321 -----------------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ + V T ++ MY KCGS++ A FD
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLV 373
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
++VV +AM G+ HG +E ++ F+ + + GIEP
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP 411
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 65/257 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------K 167
N ++ GY ++G EEA KL + + + K
Sbjct: 180 NLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+ + ++ V T LI+M+ KCG + A FD +D+V ++MI G H F
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH--GRFKQAC 297
Query: 228 GLLSNEENE--------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
L E E + + L E LEQGK VH M ++G + E
Sbjct: 298 NLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTE----------- 346
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ + A++S Y K G E+A+++F D G+ NV+ T +I +A+ G
Sbjct: 347 -----IYVGTAILSMYTKCGSMEDALEVF----DLVKGR-----NVVSWTAMIAGFAQHG 392
Query: 340 SVDLAPMFFDRTLDKDV 356
+D A +FF++ ++ +
Sbjct: 393 RIDEAFLFFNKMIESGI 409
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
+I KS + ++ + LI+MYAKCG+ A FD +KDV + + GY HGL EE
Sbjct: 135 HIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEE 194
Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARA 404
+ L + + ++P + + +++ A A
Sbjct: 195 AFKLHEQMVQDSVKPDKRTFVSMLNACADA 224
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 147/587 (25%), Positives = 228/587 (38%), Gaps = 159/587 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------------------LVCYL 46
PN V++AC L + G ++HG + GF + +
Sbjct: 35 PNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLV 94
Query: 47 FDGLFDRTIV----FLDLYHLWSRTEWSA--FGSFDGLLSNEENEYGTALDCSCD-LEFL 99
FD L ++T V + Y R+ S F + +++ +C LEFL
Sbjct: 95 FDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFL 154
Query: 100 EQGKIVHGFMIKLGLELES---DLLISLTAVCR------------YQPNVTLRNAMISGY 144
E GK +H ++++ G E++ ++LI C N+ MISGY
Sbjct: 155 EGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY 214
Query: 145 AKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNV 174
+N + EA+KLF + + Y K+ +N
Sbjct: 215 MQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNE 274
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDG---- 228
V LIDMYAK + A FD +++V+ +AMI GY E A F
Sbjct: 275 FVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVR 334
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY---- 281
L + + L S L LE K +HG +IK G+ L+ LI + + C Y
Sbjct: 335 LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDA 394
Query: 282 --------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------KWMDYYIGK-------- 318
+ ++ +WNAM GY ++ EEA+KL+ K ++
Sbjct: 395 RHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNL 454
Query: 319 ------SEYRNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
++ N ++ V L+DMYAKCGS++ A F+ ++ +DVV ++M
Sbjct: 455 ASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMI 514
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------------------- 391
+ HG EE +F + K GI+P +
Sbjct: 515 STHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIK 574
Query: 392 ---QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA VV LL R+G A +FI MPIE V R+LLSA +I
Sbjct: 575 PGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRI 621
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 128/478 (26%), Positives = 191/478 (39%), Gaps = 133/478 (27%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR--------- 137
L C L +E G++VHG + KLG + + L++ A + L
Sbjct: 203 LKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDV 262
Query: 138 ---NAMISGYAKNGYAEEAVKLFPK-WMDY-----------------------------Y 164
N+MISG NG ++A++LF + W++ Y
Sbjct: 263 ISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGY 322
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS 221
K+ + + + VL+DMY+ C F + K+VV +AMI Y GL++
Sbjct: 323 SVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKV 382
Query: 222 AFGSFD--GLLSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLIS 274
A G F GL + + +AL E L+ GK VHG+ I+ G+E ++ L+
Sbjct: 383 A-GLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALME 441
Query: 275 LTAVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFP------------- 309
+ C L WN +I GY++N A EA LF
Sbjct: 442 MYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAVTM 501
Query: 310 ----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+ M Y + Y + V LIDMY KCG++ LA FDR +
Sbjct: 502 TCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSN 561
Query: 354 KDVVMRSAMTVGYGLHGLG-----------------------------------EEGWVL 378
K+++ + M GYG+HG G +EGW
Sbjct: 562 KNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRF 621
Query: 379 FHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
F +RK H IEPR +HY +VDLL G A++FI +MPIE S+ +LL +I
Sbjct: 622 FDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRI 679
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 105/271 (38%), Gaps = 60/271 (22%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGYGLHEWSAFGSFDGLL--- 230
++ L+ MY KCG ++ A FD DV + +A++ GY A +G+L
Sbjct: 130 VLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYA----KAGDLREGVLLFR 185
Query: 231 -------SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR 280
+ L C L +E G++VHG + KLG + + L++ A
Sbjct: 186 KMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSN 245
Query: 281 YQPNVTL------------WNAMISGYAKNGYAEEAVKLFPK-WMD-------------- 313
+ L WN+MISG NG ++A++LF + W++
Sbjct: 246 RTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLP 305
Query: 314 ---------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
Y K+ + + + VL+DMY+ C F + K+VV
Sbjct: 306 ACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVS 365
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+AM Y GL ++ LF + G P
Sbjct: 366 WTAMITSYTRAGLYDKVAGLFQEMGLEGTRP 396
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 140/592 (23%), Positives = 232/592 (39%), Gaps = 164/592 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSL----------GFLVCYLFDGLFDRTIVF 57
P+ T P V+KAC L L +G +HG + + Y GL + +
Sbjct: 99 PDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKV 158
Query: 58 LDLYHLWSRTEWSA--------------FGSFDGLLSNEEN------EYGTALDCSCDLE 97
+ + W++ F +F +L EE+ T L E
Sbjct: 159 FEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEE 218
Query: 98 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMIS 142
+E+G VHG +KLGL E ++ LI + + CR+ + N+ N+MI
Sbjct: 219 DIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIG 278
Query: 143 GYAKNG------------YAEEA---------VKLFP-----------KWMDYYIGKSEY 170
GYA+ E+A + + P K + Y +
Sbjct: 279 GYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGL 338
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-- 226
++N +V I Y +CG++ + FD K V +A++ GY + A +
Sbjct: 339 QSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQ 398
Query: 227 --DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA--VCRYQ 282
D L + G+ L ++ L G+ +HGF ++ GL ++ + ISL + +C +
Sbjct: 399 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGK 458
Query: 283 P-------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMD-----YYIG------- 317
P ++ WN MI+GY++NG +EA+ LF + + Y I
Sbjct: 459 PFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGA 518
Query: 318 ------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K+ ++ V++ +IDMYAK G + L+ FDR +KDV
Sbjct: 519 CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 578
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRK----------------------------------- 384
+ + GYG+HG G+E LF + +
Sbjct: 579 NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLN 638
Query: 385 -HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H IEP+ +HY VVD+L RAG + A + I MP + + +LLS+ +I
Sbjct: 639 LHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRI 690
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 64/261 (24%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAF 223
+++ N+ ++NT +I MY+ CGS + M FD+ K++ +A++ Y +E A
Sbjct: 26 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 85
Query: 224 GSFDGLLSNEENEYGT-ALDC---SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F L+S E++ L C +C L L G+I+HG K ++L SD+ + +
Sbjct: 86 SIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATK--MDLVSDVFVGNALI 143
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321
Y + N+ WN++I G+++NG+ +E+ F + + +G+ +
Sbjct: 144 AMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQES---FNAFREMLVGEESF 200
Query: 322 RNNV-----------------------------------IVNTVLIDMYAKCGSVDLAPM 346
+V +VN LIDMY+KC + A +
Sbjct: 201 VPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQL 260
Query: 347 FFDRTLDKDVVMRSAMTVGYG 367
FD+ K++V ++M GY
Sbjct: 261 LFDKNDKKNIVSWNSMIGGYA 281
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 178/415 (42%), Gaps = 91/415 (21%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC---------- 128
+E + L L+ L +G+ +H ++K G + LI + A C
Sbjct: 123 DEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVF 182
Query: 129 --RYQPNVTLRNAMISGYAKNGYAEEAVKLFPK--------------------------- 159
+ NV N+M +GY K+G EE VKLF +
Sbjct: 183 DEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLE 242
Query: 160 ---WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
W++ Y+ + + N + T L+DMYAKCG VD A FD+ +DVV SAMI GY
Sbjct: 243 LGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYS 302
Query: 217 -----------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
HE + D NE C+ L LE GK VH F+ K +
Sbjct: 303 QASRCREALDLFHEMQK-ANID---PNEITMVSILSSCAV-LGALETGKWVHFFIKKKRM 357
Query: 266 ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
+L VTL A++ YAK G E ++++F GK + NV
Sbjct: 358 KL----------------TVTLGTALMDFYAKCGSVESSIEVF--------GKMPVK-NV 392
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHH 381
+ TVLI A G A +F L+K+V +G GL +EG LF
Sbjct: 393 LSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVS 452
Query: 382 I-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ R GIEPR +HY +VD+L RAG AF+FI NMPI+ + R LL++ K+
Sbjct: 453 MSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKV 507
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/424 (27%), Positives = 176/424 (41%), Gaps = 136/424 (32%)
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
N+MISGY NG +E+ + LF + + Y K
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIK 279
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFG 224
+ + + +N L+DMY+K G+++ A F+ ++ VV ++MI GY GL + S
Sbjct: 280 ASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSV-- 337
Query: 225 SFDGLLSNEENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
L +E + G + D C+C LE GK VH ++ + +++SDL +S
Sbjct: 338 ----RLFHEMEKEGISPDIFTITTILHACACT-GLLENGKDVHNYIKEN--KMQSDLFVS 390
Query: 275 LTAVCRYQP-----------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY--- 314
+ Y ++ WN MI GY+KN EA+ LF + M Y
Sbjct: 391 NALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVE-MQYNSK 449
Query: 315 ---------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+I ++ + + V L+DMY KCG++ LA +
Sbjct: 450 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 509
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------ 389
FD +KD+V + M GYG+HG G E F+ +R GIEP
Sbjct: 510 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 569
Query: 390 ------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+ +HYA +VDLLARAG + A+KFI MPIE ++ ALL
Sbjct: 570 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 629
Query: 432 AWKI 435
+I
Sbjct: 630 GCRI 633
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 129/323 (39%), Gaps = 87/323 (26%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR--------- 129
E Y + L DL+ ++ G+ +H + +E++ L L+ + C
Sbjct: 100 ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIF 159
Query: 130 ---YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
V L N +++GYAK G E++ LF + + I +
Sbjct: 160 DKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR------------------- 200
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCD 246
V+ A FD D+DV+ ++MI GY +SN +E G
Sbjct: 201 ---VESARKLFDELGDRDVISWNSMISGY--------------VSNGLSEKG-------- 235
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK 306
L+ EQ M+ LG+ + ++S+ A C + L G A +GYA
Sbjct: 236 LDLFEQ-------MLLLGINTDLATMVSVVAGCSNTGMLLL------GRALHGYAI---- 278
Query: 307 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
K+ + + +N L+DMY+K G+++ A F+ ++ VV ++M GY
Sbjct: 279 -----------KASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGY 327
Query: 367 GLHGLGEEGWVLFHHIRKHGIEP 389
GL + LFH + K GI P
Sbjct: 328 AREGLSDMSVRLFHEMEKEGISP 350
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 124/474 (26%), Positives = 191/474 (40%), Gaps = 140/474 (29%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCRYQPNVTLR------NAM 140
+ L G ++HG + G + SL A + R NV L+ N M
Sbjct: 197 MSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTM 256
Query: 141 ISGYAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEY 170
ISG+ +NG EEA+ +F MD + K+
Sbjct: 257 ISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHL 316
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG---- 224
+ + V L+DMY++CG +D A + F T +KDV+ ++MI GY ++ SA
Sbjct: 317 QEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPA 376
Query: 225 -SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-- 281
DG++ N + L L L+QGK +H ++++ +L+SD+L+ + Y
Sbjct: 377 MQLDGVVPNAVT-LASLLSACASLCCLKQGKSLHAWVMRK--KLDSDVLVVTALIDMYAK 433
Query: 282 ---------------QPNVTLWNAMISGYAKNGYAEEAVKLF------------------ 308
WNA++SG N A EAV LF
Sbjct: 434 CNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSV 493
Query: 309 -PKW-----------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR--TLDK 354
P + + Y+ +S + + + V T LIDMY+KCGS+D A FD +K
Sbjct: 494 IPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEK 553
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------- 391
D+++ S + GYG+HG GE +LF+ + G++P
Sbjct: 554 DIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLF 613
Query: 392 -------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
HY VVDLL RAG + A+ I +MP + S+ ALL A
Sbjct: 614 KYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGA 667
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 117/286 (40%), Gaps = 59/286 (20%)
Query: 184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSN-----EEN 235
YA CG V LA FD D + + +A+I Y G H + A FD ++ + ++
Sbjct: 127 YAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFH-FDALRVFDSMICSGKCWPDKY 185
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCRYQPNVT 286
+ + + L G ++HG + G + SL A + R NV
Sbjct: 186 TFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVM 245
Query: 287 L------WNAMISGYAKNGYAEEAVKLFPKWMDY-------------------------- 314
L WN MISG+ +NG EEA+ +F MD
Sbjct: 246 LKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGI 305
Query: 315 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ K+ + + V L+DMY++CG +D A + F T +KDV+ ++M GY ++G
Sbjct: 306 KVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNG 365
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAF 411
+ L ++ G+ P A ++ A + G S HA+
Sbjct: 366 NAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAW 411
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 94/240 (39%), Gaps = 60/240 (25%)
Query: 250 LEQGKIVHGFMIKLGL-------ELESDLLISLTAVC------------RYQPNVTLWNA 290
L + KI+HG I GL L S L +S A C P++ LWNA
Sbjct: 95 LNKTKILHGHTITSGLLHSPNFIHLPSHLAVSY-AFCGCVPLARKLFDDLSDPSLFLWNA 153
Query: 291 MISGYAKNGYAEEAVKLFPK-------WMDYYI---------------------GK---S 319
+I Y G+ +A+++F W D Y G+ S
Sbjct: 154 IIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVS 213
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+ +N+ V L+ MY CG V LA F+ L + VV + M G+ +G EE +F
Sbjct: 214 GFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVF 273
Query: 380 HHIRKHGIEPRHQHYARVVDLLARAGYSNH------AFKFIMNMPIELRLSVRRALLSAW 433
+ + +EP A +V L G+ K + ++ ++ VR AL+ +
Sbjct: 274 NSMMDARVEPDS---ATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMY 330
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/471 (25%), Positives = 194/471 (41%), Gaps = 135/471 (28%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQPNVTLR-------------NAMIS 142
L G+ VH + G++ L + L ++ A CR +P R NA+++
Sbjct: 75 LATGRAVHAQLAARGIDSEALAATALANMYAKCR-RPADARRVFDRMPVRDRVAWNALVA 133
Query: 143 GYAKNGYAEEAVKLFPKWMD-------------------------------YYIGKSEYR 171
GYA+NG A A+++ + + + +S
Sbjct: 134 GYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLE 193
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
V V T ++D Y KCG + A + FD K+ V +AMI GY + S A F+ +
Sbjct: 194 ELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRM 253
Query: 230 LSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY- 281
+ + AL +L L++G VH ++++GL+ + LI++ + C+
Sbjct: 254 VEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRV 313
Query: 282 -----------QPNVTLWNAMISGYAKNGYAEEAVKLF---------------------- 308
+ WNAMI G A+NG +E+AV+LF
Sbjct: 314 DLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL 373
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+W+ Y + +V V T LIDMYAKCG V++A + F+ ++ V+ +
Sbjct: 374 ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWN 433
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRK------------------------------------ 384
AM GYG HG G+ LF ++
Sbjct: 434 AMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKED 493
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+G+EP +HY +VDLL RAG + A+ FI MP++ LSV A+L A K+
Sbjct: 494 YGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKL 544
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/471 (25%), Positives = 194/471 (41%), Gaps = 135/471 (28%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQPNVTLR-------------NAMIS 142
L G+ VH + G++ L + L ++ A CR +P R NA+++
Sbjct: 75 LATGRAVHAQLAARGIDSEALAATALANMYAKCR-RPADARRVFDRMPVRDRVAWNALVA 133
Query: 143 GYAKNGYAEEAVKLFPKWMD-------------------------------YYIGKSEYR 171
GYA+NG A A+++ + + + +S
Sbjct: 134 GYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLE 193
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
V V T ++D Y KCG + A + FD K+ V +AMI GY + S A F+ +
Sbjct: 194 ELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRM 253
Query: 230 LSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY- 281
+ + AL +L L++G VH ++++GL+ + LI++ + C+
Sbjct: 254 VEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRV 313
Query: 282 -----------QPNVTLWNAMISGYAKNGYAEEAVKLF---------------------- 308
+ WNAMI G A+NG +E+AV+LF
Sbjct: 314 DLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPAL 373
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+W+ Y + +V V T LIDMYAKCG V++A + F+ ++ V+ +
Sbjct: 374 ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWN 433
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRK------------------------------------ 384
AM GYG HG G+ LF ++
Sbjct: 434 AMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKED 493
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+G+EP +HY +VDLL RAG + A+ FI MP++ LSV A+L A K+
Sbjct: 494 YGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKL 544
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 175/407 (42%), Gaps = 85/407 (20%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC------RY------ 130
+ + L ++ L +G+ VH ++K G E + LI + A C R+
Sbjct: 124 FSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMP 183
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD---------------------------- 162
+ ++ N+M+SGY KNG +E VKLF K ++
Sbjct: 184 ERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGEL 243
Query: 163 ---YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
Y + K RNN + T LIDMYAKCG VD A FD +DVV SAMI GY +
Sbjct: 244 IGEYIVSKGLRRNNTLT-TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQAD 302
Query: 220 W--SAFGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
A F + NE C+ L E GK VH ++ K ++L
Sbjct: 303 RCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAM-LGAYETGKWVHFYIKKKKMKL----- 356
Query: 273 ISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 332
VTL +I YAK GY + +V++F K M + NV T LI
Sbjct: 357 -----------TVTLGTQLIDFYAKCGYIDRSVEVF-KEMSF--------KNVFTWTALI 396
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIRKH-GI 387
A G +A FF L+ DV +G L ++G LF+ +R+ I
Sbjct: 397 QGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDI 456
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
EPR +HY +VD+L RAG+ A++FI NMP V R LL++ +
Sbjct: 457 EPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCR 503
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 215/515 (41%), Gaps = 120/515 (23%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
P+ T P V+KAC L + G +HG LV LF L +Y
Sbjct: 120 PDNYTYPFVIKACSELLLVEYGRVLHGLT-----LVSKFGSHLFVLN-SLLAMYMNCGEV 173
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
E A FD + + T ++ F +V M+ G+E++ ++S+
Sbjct: 174 E-EARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPA 232
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
C Y + + G +G EE V +GK IV+ L+DMYAKC
Sbjct: 233 CGYLKELEV------GRRVHGLVEEKV----------LGKK------IVSNALVDMYAKC 270
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSF-----DGLLSNEENEYGTA 240
GS+D A + FD +++DVV ++MI GY L+ SA F +GL N
Sbjct: 271 GSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALIL 330
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGL----ELESDLL----------ISLTAVCRYQPNVT 286
L C+ L L+ G+ +HG+++K L +E+ L+ +S + R T
Sbjct: 331 LACA-SLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKT 389
Query: 287 L-WNAMISGYAKNGYAEEAVKLFPKWM------------------------------DYY 315
+ WNA++SG N A EA+ LF K + + Y
Sbjct: 390 VPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSY 449
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LD-KDVVMRSAMTVGYGLHGLGE 373
+ +S + +N+ V T LID+Y+KCGS++ A F+ +D +D+ + S + GYG+HG GE
Sbjct: 450 LMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGE 509
Query: 374 EGWVLFHHIRKHGIEPR------------------------------HQ------HYARV 397
LF + + G++P HQ HY +
Sbjct: 510 TAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCM 569
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
VDLL RAG + A+ I MP +V ALL A
Sbjct: 570 VDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGA 604
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 155/426 (36%), Gaps = 135/426 (31%)
Query: 78 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR 137
LL+ + +Y + L + L K +H +I GL ++ +R
Sbjct: 16 LLAPKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGL-----------------LSIDIR 58
Query: 138 NAMISGYAKNGYAEEAVKLFPK-----------WMDYYIGKSEY---------------- 170
+ +++ YA GY A KLF + + YI K +Y
Sbjct: 59 SVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDC 118
Query: 171 -----------------------------------RNNVIVNTVLIDMYAKCGSVDLAPM 195
+++ V L+ MY CG V+ A
Sbjct: 119 CPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARK 178
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDC--------SCD- 246
FD +K VV + MI GY + F + ++ N+ + G +D +C
Sbjct: 179 VFDAMKEKSVVSWNTMINGY---FKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGY 235
Query: 247 LEFLEQGKIVHGFMIK--LGLELESDLLISLTAVC------------RYQPNVTLWNAMI 292
L+ LE G+ VHG + + LG ++ S+ L+ + A C + +V W +MI
Sbjct: 236 LKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMI 295
Query: 293 SGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYR 322
+GY NG A+ A+ LF + + ++ K
Sbjct: 296 NGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLY 355
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+ V V T LIDMYAKC + L+ F RT K V +A+ G + L E LF +
Sbjct: 356 SEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKM 415
Query: 383 RKHGIE 388
G+E
Sbjct: 416 LMEGVE 421
>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 117/447 (26%), Positives = 193/447 (43%), Gaps = 98/447 (21%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------- 130
G+ L L L GK++H + IK+ LE + L+ + + C+
Sbjct: 138 GSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPD 197
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD----------------------YYIGK- 167
+ N AM++GYA+NG + +A++ F + + Y G+
Sbjct: 198 RKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQ 257
Query: 168 -------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
S + NV V + L+DMYAKCG + A M D DVV ++MIVG H +
Sbjct: 258 VHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGY 317
Query: 221 --SAFGSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
A F + + + + Y + L + L+ G+ VH IK G + + +
Sbjct: 318 MEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNA 377
Query: 275 LTAVCRYQPNVTL---------------WNAMISGYAKNGYAEEAVKLFPKW------MD 313
L + Q N++ W ++++GY NG+ E+A++LF +D
Sbjct: 378 LVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLD 437
Query: 314 YYIGKS-----------EYRNNVIVNTV-------------LIDMYAKCGSVDLAPMFFD 349
++ E+ V N + LI MYAKCG ++ A FD
Sbjct: 438 QFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFD 497
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSN 408
++V+ +A+ VGY +GL E G F + K +GI+P HYA ++DLL RAG N
Sbjct: 498 SMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKIN 557
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKI 435
A + M +E ++ ++LLSA ++
Sbjct: 558 EAEHLLNRMDVEPDATIWKSLLSACRV 584
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 151/353 (42%), Gaps = 71/353 (20%)
Query: 107 GFMIKLGLELESDLLI-SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
F K + L I + + Y N+ N ++S +KNG +EA KLF +
Sbjct: 10 NFFTKCNFHFKHPLFIRCIHGIAHYSSNLD-SNQLLSELSKNGRVDEARKLFDQM----- 63
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GL 217
YR+ N ++I YA G++ A F+ T K+ + S+++ GY GL
Sbjct: 64 ---PYRDKYTWN-IMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGL 119
Query: 218 HEWSAFGSFDGLLSNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLL 272
++S S DG + ++Y G+ L L L GK++H + IK+ LE + L
Sbjct: 120 RQFSQMWS-DG---QKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGL 175
Query: 273 ISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------ 313
+ + + C+ + N W AM++GYA+NG + +A++ F + +
Sbjct: 176 VDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESN 235
Query: 314 ----------------YYIGK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
Y G+ S + NV V + L+DMYAKCG + A M D
Sbjct: 236 HFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILD 295
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
DVV ++M VG HG EE VLFH + I Y V+ LA
Sbjct: 296 TMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLA 348
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 122/299 (40%), Gaps = 61/299 (20%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGKSEY 170
+V N+MI G +GY EEA+ LF K + IG+S +
Sbjct: 301 DVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVH 360
Query: 171 RNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE 219
+ V+ L+DMYAK G++ A F++ LDKDV+ ++++ GY G HE
Sbjct: 361 SLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHE 420
Query: 220 WSAFGSFDGLLSNEENEYGTALDC---SC-DLEFLEQGKIVHGFMIKLG---LELESDLL 272
A F + + + + C +C +L +E G+ VH IK L + L
Sbjct: 421 -KALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSL 479
Query: 273 ISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
I++ A C NV W A+I GYA+NG E F Y K
Sbjct: 480 ITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPA 539
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMTVGYGLHG---LGEEG 375
+ +ID+ + G ++ A +R ++ D + ++ +HG LGE
Sbjct: 540 SDHYA----CMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERA 594
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 146/588 (24%), Positives = 230/588 (39%), Gaps = 161/588 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LVCY------------L 46
PN V++AC L + G ++HG + GF L+ + +
Sbjct: 127 PNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLV 186
Query: 47 FDGLFDRT-IVFLDLYHLWSRTEWSAFGSFDGLLSNEENEY-------GTALDCSCDLEF 98
FD L ++T + + + +++ SA S + E + L LEF
Sbjct: 187 FDQLSEKTAVTWTTIIAGYTKCGRSAV-SLELFAQMRETNVVPDRYVVSSVLSACSMLEF 245
Query: 99 LEQGKIVHGFMIKLGLELES---DLLISLTAVCR------------YQPNVTLRNAMISG 143
LE GK +H ++++ G E++ ++LI C N+ MISG
Sbjct: 246 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 305
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
Y +N + EA+KLF + + Y K+ ++
Sbjct: 306 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 365
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDG--- 228
V LIDMYAK + A FD +++V+ +AMI GY E A F
Sbjct: 366 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 425
Query: 229 -LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY--- 281
L + + L S L LE K +HG +IK G+ L+ LI + + C Y
Sbjct: 426 RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKD 485
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------KWMDYYIGK------- 318
+ ++ +WNAM GY ++ EEA+KL+ K ++
Sbjct: 486 ARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASN 545
Query: 319 -------SEYRNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
++ N ++ V L+DMYAKCGS++ A F+ ++ +DVV ++M
Sbjct: 546 LASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSM 605
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------------- 391
+ HG EE +F + K GI+P +
Sbjct: 606 ISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGI 665
Query: 392 ----QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA VV LL R+G A +FI MPIE V R+LLSA +I
Sbjct: 666 KPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRI 713
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 56/276 (20%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-----A 222
S +++ + +LI++ +K VD A + FD+ K+++ S+M+ Y +S
Sbjct: 56 SGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMV 115
Query: 223 FGSFDGLLSNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F NE+ + + L +E+G +HGF+++ G + D+ + + +
Sbjct: 116 FVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSG--FDQDVYVGTSLIDF 173
Query: 281 YQPN-----------------VTLWNAMISGYAKNGYAEEAVKLFP-------------- 309
Y N W +I+GY K G + +++LF
Sbjct: 174 YSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVV 233
Query: 310 ----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
K + Y+ + +V V VLID Y KC V FD+ +
Sbjct: 234 SSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 293
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
K+++ + M GY + E LF + + G +P
Sbjct: 294 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKP 329
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 46/206 (22%)
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 281
L + E+ L S + KI+HG +I GL+ ++ L L VC
Sbjct: 23 LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNAR 82
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLF-------------------------- 308
N+ W++M+S Y++ GY+EEA+ +F
Sbjct: 83 VVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQL 142
Query: 309 -----PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+ ++ +S + +V V T LID Y+K G+++ A + FD+ +K V + +
Sbjct: 143 GVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTII 202
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEP 389
GY G LF +R+ + P
Sbjct: 203 AGYTKCGRSAVSLELFAQMRETNVVP 228
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 126/544 (23%), Positives = 213/544 (39%), Gaps = 124/544 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL----VCYLFDGLFDRTIV 56
M ++ ++P VL AC + +G ++H +F GF VC L+ R
Sbjct: 281 MHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGN 340
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENE------------------------YGTALDC 92
F+ ++S+ + S++ L+S + + L
Sbjct: 341 FISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSA 400
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELE--------------SDLLISLTAVCRYQP-NVTLR 137
++ L +G+ +H + IK G+ L+ SD+ + Q NV L
Sbjct: 401 CASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLW 460
Query: 138 NAMISGYAKNGYAEEAVKLF---------PKWMDY---------------------YIGK 167
N M+ Y + ++ +F P Y K
Sbjct: 461 NVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTCTSFGALDLGEQIHSQAIK 520
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGS 225
+ + NV V +VLIDMYAK G +D+A R ++DVV +A+I GY H+ A
Sbjct: 521 TGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVVSWTALIAGYTQHDLFTEALNL 580
Query: 226 FDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
FD +L+ ++ + +A+ ++ L QG+ +H G + + L+SL A
Sbjct: 581 FDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQSYISGYSEDLSIGNALVSLYAR 640
Query: 279 CRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFP----------------- 309
C L WNA++SG+A++GY EEA+K+F
Sbjct: 641 CGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSA 700
Query: 310 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
K + I K+ + + + V+ LI +YAKCG +D A F +K+
Sbjct: 701 VSAAANMANIKQGKQIHAMIMKTGFDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNE 760
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
+ +AM GY HG G E LF +++ G +P H + V+ + G N + +
Sbjct: 761 ISWNAMITGYSQHGCGIEAVNLFQKMKQVGAKPNHVTFVGVISACSHVGLVNEGLAYFES 820
Query: 417 MPIE 420
M E
Sbjct: 821 MSKE 824
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 145/381 (38%), Gaps = 88/381 (23%)
Query: 139 AMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG--------KS 168
A+IS Y++NG+ EEA++LF K + IG K
Sbjct: 260 AVISSYSQNGFGEEAIRLFCEMHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKC 319
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF 226
+ V L+ +Y++ G+ A F + KD V +++I G S A F
Sbjct: 320 GFFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELF 379
Query: 227 DGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-------------- 268
+ L + + L ++ L +G+ +H + IK G+ L+
Sbjct: 380 KKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKC 439
Query: 269 SDLLISLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY---- 314
SD+ + Q NV LWN M+ Y + ++ +F P Y
Sbjct: 440 SDITTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSIL 499
Query: 315 -----------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
K+ + NV V +VLIDMYAK G +D+A R ++DVV
Sbjct: 500 RTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVV 559
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFK 412
+A+ GY H L E LF + GI+ + ++ + A G HA
Sbjct: 560 SWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQS 619
Query: 413 FIMNMPIELRLSVRRALLSAW 433
+I + LS+ AL+S +
Sbjct: 620 YISGYSED--LSIGNALVSLY 638
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 51/270 (18%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL----LSNE 233
LID+YAK G + A FD KD V A+I Y + + A F + LS
Sbjct: 230 LIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMHISGLSPT 289
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-------- 285
+ + L +E + G+ +H + K G LE+ + +L + N
Sbjct: 290 PYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGNFISAQQVFS 349
Query: 286 -------TLWNAMISGYAKNGYAEEAVKLFPK---------------------------- 310
+N++ISG ++ G ++ A++LF K
Sbjct: 350 KIKCKDEVSYNSLISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSK 409
Query: 311 --WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ Y K+ ++I+ L+D+Y KC + A FF T ++VV+ + M V YG
Sbjct: 410 GEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQ 469
Query: 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+ + +F ++ G+ P Y ++
Sbjct: 470 LDNLSKSFCIFRQMQIEGLIPNQFTYPSIL 499
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 46/196 (23%)
Query: 254 KIVHGFMIKLGLELESDL-------------LISLTAVCRYQPNVTL--WNAMISGYAKN 298
K +H ++K+G + ES L L S+ V P+ +L WN ++SG N
Sbjct: 107 KKLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVAN 166
Query: 299 GYAEEAVKLFPKWMDYYIGKSEYR-------------------------------NNVIV 327
+ + LF + ++ + +E + I
Sbjct: 167 KTSNRVLGLFAQMVEENVNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSIA 226
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
LID+YAK G + A FD KD V A+ Y +G GEE LF + G+
Sbjct: 227 CNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMHISGL 286
Query: 388 EPRHQHYARVVDLLAR 403
P ++ V+ A+
Sbjct: 287 SPTPYVFSSVLSACAK 302
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 182/445 (40%), Gaps = 117/445 (26%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL----TAVCRYQP----------- 132
+ L LEF++ GK +HG +++ G+E++ + L T + Q
Sbjct: 147 SVLGACSQLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADR 206
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLF------------------------------PKWMD 162
NV AMI+GY +N + EAVKLF + +
Sbjct: 207 NVISWTAMIAGYMQNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVH 266
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-- 220
Y K +++ + LIDMYAKCGS++ A FD ++VV +A+I GY E
Sbjct: 267 AYSIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLS 326
Query: 221 SAFGSF----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
A F G+LS + + L S L LE GK +H + K G+ +E LI
Sbjct: 327 EAMNLFREMRHGMLSPSFLTFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALI 386
Query: 274 SLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWM 312
+ C + ++ +WNAM+ GY + EEA+KL+ P +
Sbjct: 387 DFYSKCSCLMDARLVFDKMTEKDIVVWNAMLFGYTQQLENEEALKLYTELQISEPKPNVV 446
Query: 313 DY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ +I K+ ++ LIDMYAKCGS++ A F
Sbjct: 447 TFAALTTAASNLASLQHGQQFHNHIIKTGLDSHPFTTNSLIDMYAKCGSLEDARKAFGHV 506
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAF 411
D GLH F + K I+P +HYA VV LL R+G A
Sbjct: 507 KD-------------GLH--------YFESMPKFSIKPGTEHYACVVSLLGRSGKLYEAK 545
Query: 412 KFIMNMPIELRLSVRRALLSAWKIP 436
+FI MP E V R+LLSA ++
Sbjct: 546 EFIEKMPTEPEAVVWRSLLSACRVS 570
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 132/314 (42%), Gaps = 59/314 (18%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
C PN + ++IS + G + K M + KS + NV V T L+D+YAK
Sbjct: 36 CNENPNEYILASVISACVQVGGS------IDKQMHGFAVKSGFDRNVYVGTSLVDLYAKG 89
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSFDGLLSNEENEYG----TA 240
G++D A + FD L+K V + +I V G E S F + G +
Sbjct: 90 GNIDEARLVFDGLLEKSAVTWTTIITACVKRGRSEVS-LQLFSQMRETNVVPDGYILSSV 148
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL----TAVCRYQP-----------NV 285
L LEF++ GK +HG +++ G+E++ + L T + Q NV
Sbjct: 149 LGACSQLEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNV 208
Query: 286 TLWNAMISGYAKNGYAEEAVKLF------------------------------PKWMDYY 315
W AMI+GY +N + EAVKLF + + Y
Sbjct: 209 ISWTAMIAGYMQNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAY 268
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
K +++ + LIDMYAKCGS++ A FD ++VV +A+ GY E
Sbjct: 269 SIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLSEA 328
Query: 376 WVLFHHIRKHGIEP 389
LF +R + P
Sbjct: 329 MNLFREMRHGMLSP 342
>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
Length = 610
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 126/475 (26%), Positives = 191/475 (40%), Gaps = 142/475 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQPNVTLR-------------NAMIS 142
L G+ VH + GL ES +L + CR +P R NA+++
Sbjct: 75 LATGRAVHAQLTARGLASESLAATALANMYFKCR-RPVDARRVFDRMPARDRVAWNALVA 133
Query: 143 GYAKNGY---AEEAV------------------KLFPKWMDYYI--------------GK 167
GYA+NG A EAV + P D + G
Sbjct: 134 GYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADARVLGACREVHAFALRAGL 193
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
E N V+T ++D Y KCG+V+ A FD ++ V +AMI GY + A
Sbjct: 194 DELVN---VSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYAENGNASEALAL 250
Query: 226 FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAV 278
F ++ + AL +L L++ + VH ++++GL+ + LI+ +
Sbjct: 251 FWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLKSNVSVMNALITTYSK 310
Query: 279 CR-------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPK--------------- 310
C+ + WNAMI G+ +NG +E+A +LF +
Sbjct: 311 CKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFARMQLENVKPDSFTLVS 370
Query: 311 ---------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
W+ Y + + ++ V T LIDMY+KCG V +A FD D+
Sbjct: 371 VIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGRVTIARKLFDSARDRH 430
Query: 356 VVMRSAMTVGYGLHGLGE-----------------------------------EGWVLFH 380
V+ +AM GYG HG G+ EG F
Sbjct: 431 VITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGRKYFA 490
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++ +G+EP +HY +VDLL RAG + A+ FI NMPIE +SV A+L A K+
Sbjct: 491 SMKDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPIEPGISVYGAMLGACKL 545
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 133/590 (22%), Positives = 241/590 (40%), Gaps = 160/590 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------------CY---- 45
V P+ T P V+K C L ++ +G + I +GF + C
Sbjct: 6 VFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDAR 65
Query: 46 -LFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEEN----EYGTALDCSCDLE 97
FD + D+ V ++ ++ SA F ++S+E + L SC
Sbjct: 66 RFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEA 125
Query: 98 FLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLRNAMIS 142
+E G+ +HG +++ GL+ L + L+++ + R Q ++ + N MI
Sbjct: 126 MVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIG 185
Query: 143 GYAKNGYAEEAVKLF---------PKWMDY---------------------YIGKSEYRN 172
GY +NG+ ++A LF P + + YI +
Sbjct: 186 GYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVIL 245
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V +N+ LID+Y KC +A F+ + D+V+ +AMI GY L+ + A F LL
Sbjct: 246 DVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLL 305
Query: 231 SNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRYQ- 282
+ + + L L ++ G+ +HG++IK LE + + ++++ A C
Sbjct: 306 QKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLD 365
Query: 283 -----------PNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
+ WN++I+ ++++G EEA+ LF
Sbjct: 366 LAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACA 425
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
K + ++ K + +++ + LI+MYAKCG +++A + F+ +K+ V ++
Sbjct: 426 NIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNS 485
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------------ 391
+ YG HG + LFH++ + GI+P H
Sbjct: 486 IIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEY 545
Query: 392 ------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA + DL RAG+ + AF+ I +MP SV LL A ++
Sbjct: 546 GIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRV 595
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 177/404 (43%), Gaps = 97/404 (24%)
Query: 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------ 128
N Y L + L +GK VH M E + +++LIS+ + C
Sbjct: 52 NFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQS 111
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLF------------------------PKWMDY- 163
+V NAMISGYA +G +EAV LF P +++
Sbjct: 112 MEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFG 171
Query: 164 -----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+I K+ Y ++V V+T LI+MY KCGS++LA F+ +++VV +AMI GY H
Sbjct: 172 EQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQH 231
Query: 219 EWS--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---S 269
S AF F L+ + + + + L + LEQG +H ++ + GLE E
Sbjct: 232 GDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVG 291
Query: 270 DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP-------- 309
+ LIS+ A C PN WNAMI+GY + G+ EEA +LF
Sbjct: 292 NALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQ 350
Query: 310 ----------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
K + I ++ + +V V T LI MYAKCGS++ A
Sbjct: 351 PDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKV 410
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391
F++ +K+ V +A HG +E + +F +R+ + P H
Sbjct: 411 FNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDH 454
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 133/537 (24%), Positives = 210/537 (39%), Gaps = 125/537 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------- 41
MQ + PN + +L AC L G ++H I G+
Sbjct: 143 MQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGS 202
Query: 42 --LVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSN----EENEYGTALDC 92
L +F+ + +R +V ++ AF F L+ + + + + L
Sbjct: 203 LELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGA 262
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLR 137
+ LEQG +H ++ + GLE E + LIS+ A C PN
Sbjct: 263 CTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSW 322
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
NAMI+GY + G+ EEA +LF K + I +
Sbjct: 323 NAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVR 381
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
+ + +V V T LI MYAKCGS++ A F++ +K+ V +A I H E AF
Sbjct: 382 TAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQV 441
Query: 226 FDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAV 278
F + ++ + T L+ E E+G+ +HG + + G+ L ++ LIS+
Sbjct: 442 FKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGR 501
Query: 279 CR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------DYY----- 315
C + ++ WNAMI+ Y ++G A LF K+ D Y
Sbjct: 502 CGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINV 561
Query: 316 -------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+ K+ ++ + T LI MY+KCGS+ A F +KDV
Sbjct: 562 LRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDV 621
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
V +AM Y G++ LF +R G+ P Y V++ AR G H KF
Sbjct: 622 VCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKF 678
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 144/325 (44%), Gaps = 57/325 (17%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WS 221
++ +++ ++ +N +LI MY+KCGS++ A F DKDVV +AMI GY LH
Sbjct: 76 HMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQE 135
Query: 222 AFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
A F +GL N+ N + + L LE G+ +H + K G E + S LI
Sbjct: 136 AVDLFYQMQREGLKPNQ-NSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALI 194
Query: 274 SLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW---------- 311
++ C + NV W AMISGY ++G ++EA LF K
Sbjct: 195 NMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKV 254
Query: 312 --------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ YI ++ V+V LI MYA+CGS+ A FD
Sbjct: 255 SFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNL 314
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAF 411
+ V +AM GYG G EE + LF +++ G +P YA ++ + A N
Sbjct: 315 RSPNRVSWNAMIAGYG-EGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGK 373
Query: 412 KF---IMNMPIELRLSVRRALLSAW 433
+ I+ E ++V AL+S +
Sbjct: 374 ELHSQIVRTAWEADVTVATALISMY 398
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 48/247 (19%)
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------ 279
N Y L + L +GK VH M E + +++LIS+ + C
Sbjct: 52 NFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQS 111
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLF------------------------PKWMDY- 314
+V WNAMISGYA +G +EAV LF P +++
Sbjct: 112 MEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFG 171
Query: 315 -----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+I K+ Y ++V V+T LI+MY KCGS++LA F+ +++VV +AM GY H
Sbjct: 172 EQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQH 231
Query: 370 GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK---FIMNMPIELRLSVR 426
G +E +VLF + + G +P +A ++ K +I +E + V
Sbjct: 232 GDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVG 291
Query: 427 RALLSAW 433
AL+S +
Sbjct: 292 NALISMY 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 51/233 (21%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRYQPNVT-----LR-- 137
T L+ E E+G+ +HG + + G+ L ++ LIS+ C + +R
Sbjct: 459 TLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRR 518
Query: 138 -----NAMISGYAKNGYAEEAVKLFPKWM------DYY---------------------- 164
NAMI+ Y ++G A LF K+ D Y
Sbjct: 519 DLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIH 578
Query: 165 --IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEW 220
+ K+ ++ + T LI MY+KCGS+ A F +KDVV +AM+ Y H
Sbjct: 579 GLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHSDHGQ 638
Query: 221 SAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
A F + ++ + Y + L+ L +E GK H + + +E ++
Sbjct: 639 DALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEAAMETDT 691
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 194/493 (39%), Gaps = 141/493 (28%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRYQPNVT 135
++ +E+ L C L G + HG+++KLG + + LIS A N
Sbjct: 406 ITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAV 465
Query: 136 LR------------NAMISGYAKNGYAEEAVKLFPK-WMD-------------------- 162
L N++ISG NG EA++LF + WM
Sbjct: 466 LVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSH 525
Query: 163 -YYIGKSEYRNNVIVNTV--------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+++G+ + +V + L+DMY+ C F K+VV +AMI
Sbjct: 526 YWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMIT 585
Query: 214 GYG-----------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262
Y L E G + + +G A D E L+QGK VHG+ I+
Sbjct: 586 SYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGD-----ESLKQGKSVHGYAIR 640
Query: 263 LGLEL---ESDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKL 307
G+E ++ L+ + CR ++ WN +I GY++N +A E+ L
Sbjct: 641 NGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSL 700
Query: 308 FP-----------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKC 338
F + + Y + + + + L+DMY KC
Sbjct: 701 FSDMLLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKC 760
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE------------------------- 373
G++ +A + FDR K+++ + M GYG+HG G+
Sbjct: 761 GALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAIL 820
Query: 374 ----------EGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
EGW F+ +RK + IEP+ +HY +VDLL+ G AF+FI +MPIE
Sbjct: 821 YACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPD 880
Query: 423 LSVRRALLSAWKI 435
S+ +LL +I
Sbjct: 881 SSIWVSLLHGCRI 893
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 95/418 (22%), Positives = 158/418 (37%), Gaps = 108/418 (25%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------- 128
+S + + L C L + +G+++HG + KLGL ++ LI+L + C
Sbjct: 194 VSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAM 253
Query: 129 -----RYQPNVTLRNAMISGYAKNGYAEEAVKLFPK-WMD-------------------- 162
+ + N+ ISGY NG+ + AV LF K W +
Sbjct: 254 QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELG 313
Query: 163 -YYIGKSEYRNNV-----------------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
+GK + ++ + + L+ MY KCG + A FD K
Sbjct: 314 FELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKG 373
Query: 205 VVMRSAMIVGYGLHEWSAFGS----FDGL----LSNEENEYGTALDCSCDLEFLEQGKIV 256
V +I+G G + + F F+ + ++ +E+ L C L G +
Sbjct: 374 NVHVWNLIMG-GYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVA 432
Query: 257 HGFMIKLGLELES---DLLISLTAVCRYQPNVTL------------WNAMISGYAKNGYA 301
HG+++KLG + + LIS A N L WN++ISG NG
Sbjct: 433 HGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLN 492
Query: 302 EEAVKLFPK-WMD---------------------YYIGKSEYRNNVIVNTV--------L 331
EA++LF + WM +++G+ + +V + L
Sbjct: 493 SEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANAL 552
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+DMY+ C F K+VV +AM Y GL ++ L + GI+P
Sbjct: 553 LDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKP 610
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 116/293 (39%), Gaps = 63/293 (21%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNE 233
V LI +Y++CG ++ A FD +D + ++ I GY + W A F + S E
Sbjct: 235 VANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWS-E 293
Query: 234 ENEYGTA-----LDCSCDLEFLEQGKIVHGFMIKLGL--ELES----------DLLISLT 276
E + L +L F GK+VHG+ +K GL +LES L+ +
Sbjct: 294 GTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMY 353
Query: 277 AVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-- 321
C + NV +WN ++ GYAK EE++ LF + + I E+
Sbjct: 354 VKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHAL 413
Query: 322 -------------RNNVI---------------VNTVLIDMYAKCGSVDLAPMFFDRTLD 353
R+ ++ V LI YAK +D A + FDR
Sbjct: 414 SCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPH 473
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
+D + +++ G +GL E LF + G E V+ AR+ Y
Sbjct: 474 QDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHY 526
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 80/330 (24%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAMIVGYGLHEWSAFGSF-DGL-- 229
++ L+ Y KCG + A M FD + DV + ++++ Y + G F +G+
Sbjct: 131 VLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAY-----AKAGDFQEGVSL 185
Query: 230 --------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
+S + + L C L + +G+++HG + KLGL ++ LI+L +
Sbjct: 186 FRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSR 245
Query: 279 C------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK-WMD------------ 313
C + + WN+ ISGY NG+ + AV LF K W +
Sbjct: 246 CGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSV 305
Query: 314 ---------YYIGKSEYRNNV-----------------IVNTVLIDMYAKCGSVDLAPMF 347
+GK + ++ + + L+ MY KCG + A
Sbjct: 306 LPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRV 365
Query: 348 FDRTLDK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL----- 401
FD K +V + + + GY EE +LF + + GI P + ++ +
Sbjct: 366 FDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSC 425
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
AR G H +++ + + +V AL+S
Sbjct: 426 ARDGLVAHG--YLVKLGFGTQCAVCNALIS 453
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 146/580 (25%), Positives = 224/580 (38%), Gaps = 171/580 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDR--- 53
M A P+ T P VLKAC LPS G HG I GF +C ++ R
Sbjct: 146 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 205
Query: 54 ----TIVFLDLY----------------HLWSRTEWSAFGSFDGLL-------SNEENEY 86
+++F ++ H+ S W+A F + +NE ++
Sbjct: 206 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 265
Query: 87 GTALDC--SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG 143
+ ++ +C L+ + Q K VHG I+ G P+V + NA+I
Sbjct: 266 ISIVNILPACGSLKAVPQTKEVHGNAIRNGT----------------FPDVFVGNALIDA 309
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD----R 199
YAK G E AVK+F M++ +V+ ++ Y++ G+ + A F
Sbjct: 310 YAKCGLMENAVKVF-NMMEF--------KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKE 360
Query: 200 TLDKDVVMRSAMIVGYGLHEWSAFG-------SFDGLLSNEENEYGTALDCSCDLEFLEQ 252
+ DVV +A+I GY S F G L N C+ L Q
Sbjct: 361 NIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACA-SLGAFSQ 419
Query: 253 GKIVHGFMIK-LGLELESDL------------LISLTAVCRY--------------QPNV 285
G +H + +K L L++D LI + + CR + NV
Sbjct: 420 GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 479
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMD--YYIGKSEYRNNVI----------------- 326
W MI G+A+ G + +A+KLF + + Y + + Y + I
Sbjct: 480 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 539
Query: 327 ---------------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
V LIDMY+KCG VD A FD K + ++M GYG+HG
Sbjct: 540 AYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR 599
Query: 372 GEEGWVLFHHIRK------------------------------------HGIEPRHQHYA 395
G E +F +RK +G+ PR +HYA
Sbjct: 600 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 659
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+DLLAR+G + A++ + +MP+E V ALLSA ++
Sbjct: 660 CAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRV 699
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 146/580 (25%), Positives = 224/580 (38%), Gaps = 171/580 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDR--- 53
M A P+ T P VLKAC LPS G HG I GF +C ++ R
Sbjct: 153 MLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 212
Query: 54 ----TIVFLDLY----------------HLWSRTEWSAFGSFDGLL-------SNEENEY 86
+++F ++ H+ S W+A F + +NE ++
Sbjct: 213 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 272
Query: 87 GTALDC--SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG 143
+ ++ +C L+ + Q K VHG I+ G P+V + NA+I
Sbjct: 273 ISIVNILPACGSLKAVPQTKEVHGNAIRNGT----------------FPDVFVGNALIDA 316
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD----R 199
YAK G E AVK+F M++ +V+ ++ Y++ G+ + A F
Sbjct: 317 YAKCGLMENAVKVF-NMMEF--------KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKE 367
Query: 200 TLDKDVVMRSAMIVGYGLHEWSAFG-------SFDGLLSNEENEYGTALDCSCDLEFLEQ 252
+ DVV +A+I GY S F G L N C+ L Q
Sbjct: 368 NIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACA-SLGAFSQ 426
Query: 253 GKIVHGFMIK-LGLELESDL------------LISLTAVCRY--------------QPNV 285
G +H + +K L L++D LI + + CR + NV
Sbjct: 427 GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 486
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMD--YYIGKSEYRNNVI----------------- 326
W MI G+A+ G + +A+KLF + + Y + + Y + I
Sbjct: 487 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 546
Query: 327 ---------------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
V LIDMY+KCG VD A FD K + ++M GYG+HG
Sbjct: 547 AYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR 606
Query: 372 GEEGWVLFHHIRK------------------------------------HGIEPRHQHYA 395
G E +F +RK +G+ PR +HYA
Sbjct: 607 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 666
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+DLLAR+G + A++ + +MP+E V ALLSA ++
Sbjct: 667 CAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRV 706
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 135/586 (23%), Positives = 225/586 (38%), Gaps = 175/586 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCY--------------- 45
MQ V P+ P VLKAC +L + +G VHG + +GF C
Sbjct: 173 MQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGV 232
Query: 46 ------LFDGLFDRTIV---------------------FLDL-------YHLWSRTEWSA 71
+FD + ++ +V F D+ + + SA
Sbjct: 233 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 292
Query: 72 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 131
+ D L+ ++ + A+ S DL+ + I++ F K+GL +++L+ S +
Sbjct: 293 SANLDALIEGKQG-HAIAILNSLDLDNILGSSIIN-FYSKVGLIEDAELVFSRM----LE 346
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKL------------------------------FPKWM 161
+V N +IS Y ++ +A+ + K
Sbjct: 347 KDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEG 406
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
Y + ++V+V +IDMYAKC +D A FD T ++D+V+ + ++ Y S
Sbjct: 407 HCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLS 466
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEF-------LEQGKIVHGFMIKLGLELESDLLIS 274
G AL ++F + ++ GF+ + G E+ + S
Sbjct: 467 ----------------GEALKLFYQMQFDSVPPNVISWNSVILGFL-RNGQVNEAKDMFS 509
Query: 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY-------------------- 314
+QPN+ W +ISG A++G+ EA+ F K +
Sbjct: 510 QMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIP 569
Query: 315 ----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+I + E+ +V V T L+DMYAKCGS+D A F K++ + +AM
Sbjct: 570 SLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMIS 629
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEP------------------------------RH--- 391
Y LHG E LF H++K GIEP +H
Sbjct: 630 AYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMN 689
Query: 392 ---QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HY VV LL+R G + A + I+ MP + + +LL+A +
Sbjct: 690 PIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACR 735
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 104/258 (40%), Gaps = 58/258 (22%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+ K+EY V T L+ YAKC ++A F R ++V +A IVG +
Sbjct: 111 FFAKNEY-----VETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAA-IVGLQCRMGFSE 164
Query: 224 GSFDGLLSNEENEY-------GTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLI 273
+ G + +EN L L+ + GK VHG+++K+G S L+
Sbjct: 165 DALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLV 224
Query: 274 SLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------------- 308
+ C + NV WN+MI GY +NG +EA+ +F
Sbjct: 225 DMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRV 284
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTV---------LIDMYAKCGSVDLAPMFFDRT 351
+D I + I+N++ +I+ Y+K G ++ A + F R
Sbjct: 285 TVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRM 344
Query: 352 LDKDVVMRSAMTVGYGLH 369
L+KDVV + + Y H
Sbjct: 345 LEKDVVTWNLLISSYVQH 362
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 149/329 (45%), Gaps = 60/329 (18%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA---- 222
KS Y ++ V L+D+Y K G +D A F+ KDV+ S MI Y + S
Sbjct: 268 KSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVE 327
Query: 223 --FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
F L+ + + + L +E L G +H +IK+GL + S+ L+ + A
Sbjct: 328 MFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYA 387
Query: 278 VC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE---- 320
C ++ +VT WN +I G+ + G E+A++LF ++Y + +E
Sbjct: 388 KCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYS 447
Query: 321 --------------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
+ +++V LIDMYAKCGS+ A + FD +
Sbjct: 448 SALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQ 507
Query: 355 DVVMRSAMTVGYGLHGLG-------EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGY 406
D V +AM GY +HGL ++G F I+ HGIEP +HY +V LL R G+
Sbjct: 508 DEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGH 567
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ A K I +P + + V RALL A I
Sbjct: 568 LDKAVKLIDEIPFQPSVMVWRALLGACVI 596
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 162/414 (39%), Gaps = 98/414 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFM--IKLGLELESDLLISLTAVCRYQP--NV 134
+ +E G L C E L++G + F I L + ++SD L + + P N
Sbjct: 49 IQKDEPSRGKGLHC----EILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNT 104
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPK-----------------------------W-MDYY 164
+I GYA++ EA++LF + W +
Sbjct: 105 ISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHAC 164
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
I K + +N V T LID Y+ CG VD+A FD L KD+V + M+ + E F
Sbjct: 165 IFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFA--ENDCFK 222
Query: 225 SFDGLLSN--------EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
L S + + LE + GK VHG +K EL DL + +
Sbjct: 223 EALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYEL--DLYVGVA 280
Query: 277 AVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PK 310
+ Y + +V W+ MI+ YA++ ++EAV++F P
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340
Query: 311 WMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ ++ K ++V V+ L+D+YAKCG ++ + F
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFA 400
Query: 350 RTLDK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ + DV + + VG+ G GE+ LF ++ ++ ++ Y+ + A
Sbjct: 401 ESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 454
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 141/368 (38%), Gaps = 79/368 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFS----------LGFLVCYLFDGL 50
M++ PN T V KAC+ L + +G VHG + L Y G
Sbjct: 231 MRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGD 290
Query: 51 FDRTIVFLDLYHLWSRTEWSA------------------FGSFDGLLSNEENEYGTALDC 92
D + WS F L+ + + + L
Sbjct: 291 IDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQA 350
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------------RYQPNVTL 136
+E L G +H +IK+GL + S+ L+ + A C ++ +VT
Sbjct: 351 CATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTP 410
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------------- 169
N +I G+ + G E+A++LF ++Y + +E
Sbjct: 411 WNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV 470
Query: 170 ---YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
+ +++V LIDMYAKCGS+ A + FD +D V +AMI GY +H + +
Sbjct: 471 KTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLACANA- 529
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
GLL ++ Y T++ +E + +++ G L D + L +QP+V
Sbjct: 530 -GLL-DQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHL--DKAVKLIDEIPFQPSVM 585
Query: 287 LWNAMISG 294
+W A++
Sbjct: 586 VWRALLGA 593
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 167/415 (40%), Gaps = 117/415 (28%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPK------------------------------WMD 162
NV +MISG +NG+A + + LF K WM
Sbjct: 230 NVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMH 289
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EW 220
+ K +N ++ L+DMY KCG +D A FD D+V+ + MIVGY +
Sbjct: 290 GSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPL 349
Query: 221 SAFGSF-DGLLSN-EENEYGTA--LDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLI 273
A F D +N N TA L S L L GK +HG +KLGL + + L+
Sbjct: 350 DALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALV 409
Query: 274 SLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------- 312
+ A C+ +V WN+MISGYA+N ++A+ LF +
Sbjct: 410 DMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAI 469
Query: 313 -------------DYYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
D IGKS + +N+ V+T L+++Y KCG + A FD
Sbjct: 470 SVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEM 529
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------------------- 386
D++ V AM GYG+ G LF + K G
Sbjct: 530 NDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGK 589
Query: 387 -----------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
I P +HYA +VD+LARAG A +FI NMP++ SV A L
Sbjct: 590 RYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFL 644
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 127/299 (42%), Gaps = 66/299 (22%)
Query: 153 AVKLFPKWMDYYIGKSEYRNNVIVN-------TVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
A+K + +Y G+S + + + V L+DMYAK ++ A F+R D++V
Sbjct: 172 ALKACIRSAEYSYGRSLHCDAIKVGGADGFVMNSLVDMYAKAEDLECARKVFERIPDRNV 231
Query: 206 VMRSAMIVGYGLHEWSAFGSFDGLL----------SNEENEYGTALDCSCDLEFLEQGKI 255
V ++MI G + F S DGLL E T + L L QG+
Sbjct: 232 VSWTSMISGC---VQNGFAS-DGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRW 287
Query: 256 VHGFMIKLGLELESDLLISLT-----------AVCRYQP----NVTLWNAMISGYAKNGY 300
+HG +IK GL S + +L A C + ++ LW MI GY +NG
Sbjct: 288 MHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGN 347
Query: 301 AEEAVKLF----------------------PKWMDYYIGKSEYRNNV--------IVNTV 330
+A++LF + D +GKS + V +V
Sbjct: 348 PLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNA 407
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
L+DMYAKC +V A F R +KDVV ++M GY + +G++ +LF + G P
Sbjct: 408 LVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSP 466
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 100/415 (24%), Positives = 155/415 (37%), Gaps = 105/415 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTI 55
V P+ T V+ AC AL L G +HG + G F+ L D G D
Sbjct: 262 VPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHAR 321
Query: 56 VFLDLYHLWSRTEWSAF--------GSFDGL----------LSNEENEYGTALDCSCDLE 97
D W+ D L ++ T L S L
Sbjct: 322 CVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLR 381
Query: 98 FLEQGKIVHGFMIKLGL---ELESDLLISLTAVCR------------YQPNVTLRNAMIS 142
L GK +HG +KLGL + + L+ + A C+ +V N+MIS
Sbjct: 382 DLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMIS 441
Query: 143 GYAKNGYAEEAVKLFPKWM----------------------DYYIGKS--------EYRN 172
GYA+N ++A+ LF + D IGKS + +
Sbjct: 442 GYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVS 501
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSF- 226
N+ V+T L+++Y KCG + A FD D++ V AMI GYG+ SA FG
Sbjct: 502 NIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEML 561
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGK-----IVHGFMIKLGLELESDLLISLTAVCR 280
DG+ N+ + + L + GK + F I ++ + ++ L
Sbjct: 562 KDGVYPNDI-AFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGN 620
Query: 281 ------------YQPNVTLWNAMISG---YAKNGYAEEAVK----LFPKWMDYYI 316
Q + ++W A + G +++ +AEEA+K L P+ D Y+
Sbjct: 621 LEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYV 675
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 304 AVKLFPKWMDYYIGKSEYRNNVIVN-------TVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
A+K + +Y G+S + + + V L+DMYAK ++ A F+R D++V
Sbjct: 172 ALKACIRSAEYSYGRSLHCDAIKVGGADGFVMNSLVDMYAKAEDLECARKVFERIPDRNV 231
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
V ++M G +G +G +LF+ +R+ + P A V+
Sbjct: 232 VSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVI 273
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 123/472 (26%), Positives = 193/472 (40%), Gaps = 137/472 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTLRNAMI 141
LE+GK +HG L ++SD+L++ + Y ++ +A+I
Sbjct: 345 LEKGKEIHG--CALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402
Query: 142 SGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYR 171
+ + GY EEA+ LF K + + K++
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD 462
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGL 229
+++ T L+ MYAKCG A F+R +D+V +++I GY ++A F L
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522
Query: 230 -LSNEENEYGTALDC--SCDL-EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQ 282
LS + GT + +C L L+QG +HG ++KLG E + + LI + A C
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582
Query: 283 PNVTL-------------WNAMISGYAKNGYAEEAVKLF---------PKWMDYY----- 315
P+ WN +I+ Y +NG+A+EA+ F P + +
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 642
Query: 316 ----------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
I + + +N +V LIDMYAKCG +D + F+ KD V
Sbjct: 643 AAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSW 702
Query: 360 SAMTVGYGLHGLG-----------------------------------EEGWVLFHHIR- 383
+AM GY +HG G EEG +FH +
Sbjct: 703 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSD 762
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K+ I+P +HYA +VDLL RAG + FI MP+E V ALL + ++
Sbjct: 763 KYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRM 814
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 55/267 (20%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL-LSN 232
V+ LID+Y+KCG VD+A FD+ +D+D V M+ GY + FD + L N
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324
Query: 233 EENEYGTALD---CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP------ 283
+A+ + + LE+GK +HG L ++SD+L++ + Y
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHG--CALQQRIDSDILVATPLMVMYAKCGETEK 382
Query: 284 -----------NVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
++ W+A+I+ + GY EEA+ LF
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
K + + K++ +++ T L+ MYAKCG A F+R +D+V +++
Sbjct: 443 LSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSL 502
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEP 389
GY G +F+ +R I P
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINP 529
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 132/329 (40%), Gaps = 58/329 (17%)
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
W I + +V + L+DMY+K G + A FD+ +DVV +AMI G E
Sbjct: 150 WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 209
Query: 220 --WSAFGSFDGL-LSNEENEYGTALDC---SCDLEFLEQGKIVHGFMIKLGLELE-SDLL 272
A F + L E + L+ C L +E + +HG++ + S+ L
Sbjct: 210 DPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGL 269
Query: 273 ISLTAVCR-------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKW-------- 311
I L + C Q +V+ W M++GYA NG E ++LF K
Sbjct: 270 IDLYSKCGDVDVARRVFDQMVDQDDVS-WGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328
Query: 312 --------------MDYYIGK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+D GK ++++V T L+ MYAKCG + A F
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV----DL-LARA 404
+D+V SA+ G EE LF ++ ++P ++ DL L +
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKL 448
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAW 433
G S H F +M + LS AL+S +
Sbjct: 449 GKSIHCFTVKADMDSD--LSTGTALVSMY 475
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 138/358 (38%), Gaps = 99/358 (27%)
Query: 96 LEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR-------------NA 139
L L+QG +HG ++KLG E + + LI + A C P+ N
Sbjct: 544 LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603
Query: 140 MISGYAKNGYAEEAVKLF---------PKWMDYY---------------------IGKSE 169
+I+ Y +NG+A+EA+ F P + + I +
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG 663
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +N +V LIDMYAKCG +D + F+ KD V +AM+ GY +H G D
Sbjct: 664 FLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVH-----GHGDRA 718
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
++ + M + ++++S +S+ + CR+
Sbjct: 719 IA------------------------LFSLMQESQVQIDSVSFVSVLSACRHA------- 747
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
G EE K+F D Y K + + ++D+ + G D F
Sbjct: 748 ---------GLVEEGRKIFHSMSDKYHIKPDLEH----YACMVDLLGRAGLFDETLGFIK 794
Query: 350 -RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-QHYARVVDLLARAG 405
++ D + A+ +H + G V H+ K +EPR+ H+ + + A++G
Sbjct: 795 VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVK--LEPRNPAHFVVLSSIYAQSG 850
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 133/517 (25%), Positives = 206/517 (39%), Gaps = 129/517 (24%)
Query: 14 PLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLYHLWSRTEW 69
P VLKAC +PS L+G VHG + GF VC ++ L+ + E
Sbjct: 128 PSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIEN 187
Query: 70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-LISLTAVC 128
S+ ++ + + LD E L+ + +H +K S++ +IS+T V
Sbjct: 188 KDVVSWSTMIRSYDRS--GLLD-----EALDLLRDMHVMRVK-----PSEIGMISITHVL 235
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
++ L AM + +NG GKS V + T LIDMY KC
Sbjct: 236 AELADLKLGKAMHAYVMRNGKC---------------GKS----GVPLCTALIDMYVKCE 276
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGY----GLHEW-----SAFGSFDGLLSNEENEYGT 239
++ A FD ++ +AMI Y L+E G +G+ NE
Sbjct: 277 NLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLG--EGMFPNEITMLSL 334
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPN 284
+C LE GK++H F ++ G L + I + C +
Sbjct: 335 VKECG-TAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKD 393
Query: 285 VTLWNAMISGYAKNGYAEEAVKLF------------------------------PKWMDY 314
+ +W+AMIS YA+N +EA +F KW+
Sbjct: 394 LMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHS 453
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE- 373
YI K + ++I+ T +DMYA CG +D A F D+D+ M +AM G+ +HG GE
Sbjct: 454 YIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEA 513
Query: 374 ----------------------------------EGWVLFHH-IRKHGIEPRHQHYARVV 398
EG LFH + + G P+ +HY +V
Sbjct: 514 ALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMV 573
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLL RAG + A + I +MP+ ++V + L+A K+
Sbjct: 574 DLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKL 610
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 141/525 (26%), Positives = 214/525 (40%), Gaps = 126/525 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
VAPN T P VLKAC AL L G +H + G F+ L D L+ R F
Sbjct: 96 VAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALID-LYIRCARFGPA 154
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+++++ +++ +L+ N Y A+ D++ HG GL +
Sbjct: 155 RNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ-------DHG-----GLRPNA 202
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+SL P + A+ G + + Y A + V++ T
Sbjct: 203 STLVSLL------PLLAQHGALFQGTSIHAYCLRACL------------EQNEEQVLIGT 244
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-----DGLLS 231
L+DMYAKC + A F ++ V SA+I G+ L + AF F +GL
Sbjct: 245 ALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCF 304
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL- 287
+AL L L G +H + K G+ + S+ L+S+ A T+
Sbjct: 305 LSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMF 364
Query: 288 -----------WNAMISGYAKNGYAEEAVKLFPKWMDYYI-------------------- 316
+ A++SG +NG AEEA +F K +
Sbjct: 365 FDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAAL 424
Query: 317 --GKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
GK + + +I + LIDMYAKCG +DL+ FD+ +DVV + M GY
Sbjct: 425 QHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGY 484
Query: 367 GLHGLGEEGWVLFHHIR------------------------------------KHGIEPR 390
G+HGLG+E LF ++ K+GI PR
Sbjct: 485 GIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR 544
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDLLAR G + A++FI +MP++ + V ALL A +I
Sbjct: 545 MEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRI 589
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 135/586 (23%), Positives = 225/586 (38%), Gaps = 175/586 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCY--------------- 45
MQ V P+ P VLKAC +L + +G VHG + +GF C
Sbjct: 1268 MQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGV 1327
Query: 46 ------LFDGLFDRTIV---------------------FLDL-------YHLWSRTEWSA 71
+FD + ++ +V F D+ + + SA
Sbjct: 1328 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 1387
Query: 72 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 131
+ D L+ ++ + A+ S DL+ + I++ F K+GL +++L+ S +
Sbjct: 1388 SANLDALIEGKQG-HAIAILNSLDLDNILGSSIIN-FYSKVGLIEDAELVFSRM----LE 1441
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKL------------------------------FPKWM 161
+V N +IS Y ++ +A+ + K
Sbjct: 1442 KDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEG 1501
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
Y + ++V+V +IDMYAKC +D A FD T ++D+V+ + ++ Y S
Sbjct: 1502 HCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLS 1561
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEF-------LEQGKIVHGFMIKLGLELESDLLIS 274
G AL ++F + ++ GF+ + G E+ + S
Sbjct: 1562 ----------------GEALKLFYQMQFDSVPPNVISWNSVILGFL-RNGQVNEAKDMFS 1604
Query: 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY-------------------- 314
+QPN+ W +ISG A++G+ EA+ F K +
Sbjct: 1605 QMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIP 1664
Query: 315 ----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+I + E+ +V V T L+DMYAKCGS+D A F K++ + +AM
Sbjct: 1665 SLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMIS 1724
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEP------------------------------RH--- 391
Y LHG E LF H++K GIEP +H
Sbjct: 1725 AYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMN 1784
Query: 392 ---QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HY VV LL+R G + A + I+ MP + + +LL+A +
Sbjct: 1785 PIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACR 1830
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 110/277 (39%), Gaps = 58/277 (20%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+ K+EY V T L+ YAKC ++A F R ++V +A IVG +
Sbjct: 1206 FFAKNEY-----VETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAA-IVGLQCRMGFSE 1259
Query: 224 GSFDGLLSNEENEY-------GTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLI 273
+ G + +EN L L+ + GK VHG+++K+G S L+
Sbjct: 1260 DALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLV 1319
Query: 274 SLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------------- 308
+ C + NV WN+MI GY +NG +EA+ +F
Sbjct: 1320 DMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRV 1379
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTV---------LIDMYAKCGSVDLAPMFFDRT 351
+D I + I+N++ +I+ Y+K G ++ A + F R
Sbjct: 1380 TVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRM 1439
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
L+KDVV + + Y H + + H +R +
Sbjct: 1440 LEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLR 1476
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 143/598 (23%), Positives = 244/598 (40%), Gaps = 166/598 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY----- 45
M + V N T VLKAC + L +G +VHG + GF +V Y
Sbjct: 148 MHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDE 207
Query: 46 ------LFDGLFDRTIVFLD-LYHLWSRTEW--SAFGSF-DGLLSN-EENEYG--TALDC 92
LFD + +R +V + L+ + + ++ A G F + +LS + NE+ + ++
Sbjct: 208 FLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNA 267
Query: 93 SCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR------------YQPNVTLR 137
L +GKI+HG++IKLG + ++ L+ + A QP++
Sbjct: 268 CTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSW 327
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
NA+I+G + + E+A++L + + + K
Sbjct: 328 NAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMK 387
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
+ +++ V+ L+DMY+KC ++ A M F+ +KD++ +A+I GY + + A
Sbjct: 388 MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSL 447
Query: 226 F-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F +G+ N+ T L + L+ + + VHG +K G SD+ + + +
Sbjct: 448 FVEMHKEGIGFNQTT-LSTILKSTAGLQVVHVCRQVHGLSVKSGFH--SDIYVVNSLIDS 504
Query: 281 YQP-----------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323
Y ++ + +MI+ YA+ G EEA+KLF + D + +
Sbjct: 505 YGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVC 564
Query: 324 NVIVNTV------------------------------LIDMYAKCGSVDLAPMFFDRTLD 353
+ ++N L++MYAKCGS+D A F +
Sbjct: 565 SSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTE 624
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------------- 391
+ +V SAM G HG G + LF+ + K G+ P H
Sbjct: 625 RGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLY 684
Query: 392 --------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA ++DLL RAG N A + + MP E SV ALL A +I
Sbjct: 685 FESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARI 742
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 166/398 (41%), Gaps = 96/398 (24%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR------------Y 130
Y L C + L G +H + K GL + + LI+L + CR
Sbjct: 59 YSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESS 118
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGK- 167
+P++ +A+ISGYA+NG A+ F + D IGK
Sbjct: 119 EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQ 178
Query: 168 -------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
S + +V V L+ MYAKC + FD +++VV +A+ Y ++
Sbjct: 179 VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDF 238
Query: 221 --SAFGSF-DGLLSN-EENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDL 271
A G F + +LS + NE+ + ++ L +GKI+HG++IKLG + ++
Sbjct: 239 CGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANA 298
Query: 272 LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKL------------ 307
L+ + A QP++ WNA+I+G + + E+A++L
Sbjct: 299 LVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPN 358
Query: 308 ------------------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ + + K + +++ V+ L+DMY+KC ++ A M F+
Sbjct: 359 IFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFN 418
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+KD++ +A+ GY + E LF + K GI
Sbjct: 419 LLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGI 456
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
+I KS ++ + LI++Y+KC + A D + + D+V SA+ GY +GLG
Sbjct: 81 HITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGG 140
Query: 375 GWVLFHHIRKHGIEPRHQHYARVV 398
+ FH + G++ ++ V+
Sbjct: 141 ALMAFHEMHLLGVKCNEFTFSSVL 164
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 144/347 (41%), Gaps = 87/347 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSN 232
V T LI +Y+KCG V+ A + F R D++ +AMI G+ G E S + L S
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305
Query: 233 EENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---------CR 280
E T + L +HGF +K G+ L + + TA+ R
Sbjct: 306 ERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLAR 365
Query: 281 Y------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------- 309
+ + V WNAMISGY +NG E A+ LF
Sbjct: 366 HLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
KW+ + I N+ V+T L+DMYAKCG++ A FD +K+ V + M
Sbjct: 426 SLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIF 485
Query: 365 GYGLHGLGE-----------------------------------EGWVLFHH-IRKHGIE 388
GYGLHG G EG +FH+ + K+ IE
Sbjct: 486 GYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIE 545
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P +HYA +VD+L R+G A +FI MP+E +V LL A I
Sbjct: 546 PLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMI 592
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 45/161 (27%)
Query: 105 VHGFMIKLGLELESDLLISLTAV---------CRY------QPNVTLRNAMISGYAKNGY 149
+HGF +K G+ L + + TA+ R+ + V NAMISGY +NG
Sbjct: 332 IHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGS 391
Query: 150 AEEAVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTV 179
E A+ LF KW+ + I N+ V+T
Sbjct: 392 TETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTA 451
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
L+DMYAKCG++ A FD +K+ V + MI GYGLH +
Sbjct: 452 LVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGY 492
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 117/289 (40%), Gaps = 55/289 (19%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS---- 225
Y +NV V + L+D+Y K V A FD ++D V+ + MI GL + F
Sbjct: 139 YGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMI--NGLVKNCCFDDSIQL 196
Query: 226 FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAV 278
F ++++ + + L + +L+ L+ G + +K+G + LISL +
Sbjct: 197 FREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSK 256
Query: 279 CR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------DYYIG- 317
C +P++ +NAMISG+ NG E +VKLF + + +G
Sbjct: 257 CGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGL 316
Query: 318 ---------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
KS N V+T +Y K +DLA FD + +K V
Sbjct: 317 IPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTV 376
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
V +AM GY +G E LF + K P ++ A+ G
Sbjct: 377 VAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 130/471 (27%), Positives = 199/471 (42%), Gaps = 137/471 (29%)
Query: 99 LEQGKIVHGFMIKLGLELE----SDLLI---------SLTAVCRYQP--NVTLRNAMISG 143
L +G+ VHG +IK GL+L+ + L+I S V R P ++ N+MISG
Sbjct: 142 LAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISG 201
Query: 144 YAKNGYAEEAVKLFPKW------MDYY--IG----------------------KSEYRNN 173
Y G ++ F + +D + IG +S +
Sbjct: 202 YVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELD 261
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
V+V T L+DMYAKCG +D A FD+ DK +V +AMI GY L+ S F SF + +
Sbjct: 262 VMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQS-FESFAYVRKMQ 320
Query: 234 EN-----EYGTALD----CSCDLEFLEQGKIVHGFMIKLG----LELESDLLISLTAVCR 280
E ++ T ++ C+ LE + GK VHGF I+ G L LE+ L+ +
Sbjct: 321 EGGKLHPDWITMINLLPPCA-QLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGK 379
Query: 281 YQP-----------NVTLWNAMISGYAKNGYAEEAVKLF-------------------PK 310
+P N+ WNAMI+ Y KNG +A+ LF P
Sbjct: 380 LKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPA 439
Query: 311 WMDY-----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ + Y+ K + +N V+ ++ MY KCG++ A FDR KDV+
Sbjct: 440 YAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISW 499
Query: 360 SAMTVGYGLHGLGE-----------------------------------EGWVLFHHI-R 383
+ + + Y +HG G EGW F+ + R
Sbjct: 500 NTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKR 559
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ I P +HY ++DL+ R G +HA FI MP+ + +LL+A +
Sbjct: 560 DYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASR 610
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 121/283 (42%), Gaps = 56/283 (19%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
RN+V + T + Y + G + A F+ D + + MI G+ GL W A +
Sbjct: 58 RNSVSL-TRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLF-WDAVDFYH 115
Query: 228 ----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE----SDLLI------ 273
G + + Y + L L +G+ VHG +IK GL+L+ + L+I
Sbjct: 116 RMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIG 175
Query: 274 ---SLTAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKW------MDYY--IG--- 317
S V R P ++ WN+MISGY G ++ F + +D + IG
Sbjct: 176 CIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILG 235
Query: 318 -------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+S +V+V T L+DMYAKCG +D A FD+ DK +V
Sbjct: 236 ACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVA 295
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
+AM GY L+ E + +++ G H + +++LL
Sbjct: 296 WNAMIGGYSLNAQSFESFAYVRKMQEGG--KLHPDWITMINLL 336
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 138/548 (25%), Positives = 220/548 (40%), Gaps = 139/548 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLY 61
V PN T P VLKAC L ++ G +H G VC + + + ++
Sbjct: 105 VRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQ 164
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCD--LEFLEQGKIVHGFMIKLGLELESD 119
L+S +++ +++ G +L CD ++ + Q M + G+ S
Sbjct: 165 RLFSSMSHRDVVAWNAMIA------GCSLYGLCDDAVQLIMQ-------MQEEGICPNSS 211
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
++ + P V A+ G A +GY + + N V+V T
Sbjct: 212 TIVGVL------PTVGEAKALGHGKALHGYCV---------------RRSFDNGVVVGTG 250
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENE- 236
L+DMYAKC + A FD ++ V SAMI GY + A FD ++ + +
Sbjct: 251 LLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDP 310
Query: 237 ----YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------RY- 281
G+ L L L +G+ +H ++IKLG L+ + L+S+ A C R+
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFF 370
Query: 282 ---QPNVTL-WNAMISGYAKNGYAEEAVKLF---------PKWMDY-------------- 314
P ++ ++A++SG +NG A A+ +F P
Sbjct: 371 DXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430
Query: 315 -------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
Y+ + + ++ LIDMY+KCG + A F+R D+V +AM +GYG
Sbjct: 431 HGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 490
Query: 368 LHGLGEEGWVLFHHI------------------------------------RKHGIEPRH 391
+HGLG E LFH + R I PR
Sbjct: 491 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRM 550
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGID 451
+H +VD+L RAG + A FI NMP E + + ALLSA +I + I+
Sbjct: 551 EHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH-----------KNIE 599
Query: 452 EGEKTDKR 459
GE+ K+
Sbjct: 600 LGEEVSKK 607
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 141/525 (26%), Positives = 214/525 (40%), Gaps = 126/525 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
VAPN T P VLKAC AL L G +H + G F+ L D L+ R F
Sbjct: 96 VAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALID-LYIRCARFGPA 154
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+++++ +++ +L+ N Y A+ D++ HG GL +
Sbjct: 155 RNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ-------DHG-----GLRPNA 202
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+SL P + A+ G + + Y A + V++ T
Sbjct: 203 STLVSLL------PLLAQHGALFQGTSIHAYCLRACL------------EQNEEQVLIGT 244
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-----DGLLS 231
L+DMYAKC + A F ++ V SA+I G+ L + AF F +GL
Sbjct: 245 ALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCF 304
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL- 287
+AL L L G +H + K G+ + S+ L+S+ A T+
Sbjct: 305 LSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMF 364
Query: 288 -----------WNAMISGYAKNGYAEEAVKLFPKWMDYYI-------------------- 316
+ A++SG +NG AEEA +F K +
Sbjct: 365 FDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAAL 424
Query: 317 --GKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
GK + + +I + LIDMYAKCG +DL+ FD+ +DVV + M GY
Sbjct: 425 QHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGY 484
Query: 367 GLHGLGEEGWVLFHHIR------------------------------------KHGIEPR 390
G+HGLG+E LF ++ K+GI PR
Sbjct: 485 GIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR 544
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDLLAR G + A++FI +MP++ + V ALL A +I
Sbjct: 545 MEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRI 589
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 142/592 (23%), Positives = 220/592 (37%), Gaps = 172/592 (29%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIV 56
APN L+AC ++ G +VHG +G + Y G D ++
Sbjct: 111 APNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAML 170
Query: 57 FLDLYHLWSRTEWSA-----------------FGSFDGLLSNEENEY--GTALDCSCDLE 97
D + + W+A FG GL + + +A+ L
Sbjct: 171 VFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKM-GLDGVRPDRFVLASAVSACSALG 229
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAV---------------CRYQPNVTLRNAMIS 142
FLE G+ HG+ ++ +E ++ ++ +L + C N+ MI+
Sbjct: 230 FLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIA 289
Query: 143 GYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRN 172
GY +N EA+ +F + + + K+ +
Sbjct: 290 GYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLES 349
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL--- 229
+ V LIDMYAKC + A F+ + D + +AMI GY S G G
Sbjct: 350 DEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY-----SRLGDLAGAIDV 404
Query: 230 --------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE----SDLL----- 272
L + + L S +E K +HG ++K G L+ S L+
Sbjct: 405 FSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSK 464
Query: 273 ISLTAVCR------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY----- 321
SL + + ++ +WNAMI G A+N EEAVKLF + + +E+
Sbjct: 465 FSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVAL 524
Query: 322 ----------------RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+I V+ LIDMYAKCG + + F+ TL KDV
Sbjct: 525 VTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDV 584
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------------RH--- 391
+ ++M Y HG EE +F + G+EP RH
Sbjct: 585 ICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDF 644
Query: 392 -----------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+HYA VV+L R+G + A +FI MPIE +V R+LLSA
Sbjct: 645 MKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSA 696
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 107/270 (39%), Gaps = 53/270 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--------WSAFG 224
++ + +L+ Y+K G V A FDR K++V + I + H ++AF
Sbjct: 45 DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA---- 277
G + E +AL + G+ VHG +++GL+ LI+L A
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGC 164
Query: 278 ------VCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKW------MDYYIGKSE--- 320
V P N W A+I+GY++ G A++LF K D ++ S
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224
Query: 321 ---------------YRNNVIVNT------VLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
Y + V T LID+Y KC + LA FD ++++V
Sbjct: 225 CSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSW 284
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ M GY + E +F + + G +P
Sbjct: 285 TTMIAGYMQNSCDAEAMAMFWQLSQEGWQP 314
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 39/186 (20%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------- 322
N+ W + IS +A++G E+AV LF + G++
Sbjct: 74 HKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFG 133
Query: 323 -------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
NV V T LI++YAK G +D A + FD K+ V +A+ GY
Sbjct: 134 QQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQI 193
Query: 370 GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY-----SNHAFKFIMNMPIELRLS 424
G G LF + G+ P A V + G+ H + + + +E S
Sbjct: 194 GQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAY--RIAVETDAS 251
Query: 425 VRRALL 430
V AL+
Sbjct: 252 VINALI 257
>gi|255585042|ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526949|gb|EEF29150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 575
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 155/352 (44%), Gaps = 62/352 (17%)
Query: 116 LESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP---KWMDYYIG------ 166
L + ++ L VC Y+ ++ L MISG + + + P + + +G
Sbjct: 183 LYNTMISGLVRVCCYEDSIRLFKYMISGNGPQFDSTTVLAVLPALAELQELRLGTEIQCL 242
Query: 167 --KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG--YGLHEWSA 222
K + +++ V T LI +Y+KCG VD A + F KD++ +AMI G + S+
Sbjct: 243 AIKLGFLSHISVVTGLISLYSKCGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESS 302
Query: 223 FGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F+ L + E +++ C +L +HGF +K G+ S + +LT V
Sbjct: 303 VRLFEEWLDSGEKVNSSSIVGLIPVYCPFGYLPLTNCIHGFGVKSGIVSHSSVATALTTV 362
Query: 279 CR---------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------- 309
+ + WNAMI+GY +NG E+A+ LF
Sbjct: 363 YSRLNEMEAARQLFDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQMYNISPNPVTV 422
Query: 310 ----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
KW+ + + NV V+T LIDMYAKCGS+ A FD +
Sbjct: 423 TSILSACAQLGALTLGKWIHGLVKFKSFEYNVYVSTALIDMYAKCGSILEARRLFDSMPE 482
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
K+ V +A+ GYGLHGLG+E LF+ + GI+P + V+ + AG
Sbjct: 483 KNEVTWNAIISGYGLHGLGQEALKLFYEMLNCGIQPTRVTFLSVLYACSHAG 534
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 138/359 (38%), Gaps = 85/359 (23%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF----------PKWMDYYIGKSEYRN-------- 172
+P++ L N +I G++ N A+ LF P Y S RN
Sbjct: 76 KPDLFLFNVLIKGFSNNNSPLSAISLFTHLRKSTDLYPDNFTYAFVVSAARNFGDAKIGF 135
Query: 173 -------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YG 216
++ V + L+DMY K D+A FD+ ++D ++ + MI G
Sbjct: 136 SLHGRVIVDGLSSDLFVGSALVDMYFKLSREDIALKVFDKLPERDTILYNTMISGLVRVC 195
Query: 217 LHEWSAFGSFDGLLSNEENEYGTA-----LDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
+E + F ++S ++ + L +L+ L G + IKLG +
Sbjct: 196 CYE-DSIRLFKYMISGNGPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFLSHISV 254
Query: 272 ---LISLTAVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFPKWMD--- 313
LISL + C ++ +NAMISG NG E +V+LF +W+D
Sbjct: 255 VTGLISLYSKCGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESSVRLFEEWLDSGE 314
Query: 314 -----YYIG----------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+G KS ++ V T L +Y++ ++ A
Sbjct: 315 KVNSSSIVGLIPVYCPFGYLPLTNCIHGFGVKSGIVSHSSVATALTTVYSRLNEMEAARQ 374
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
FD + +K + +AM GY +G E+ LF ++ + I P ++ A+ G
Sbjct: 375 LFDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQMYNISPNPVTVTSILSACAQLG 433
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 126/488 (25%), Positives = 196/488 (40%), Gaps = 139/488 (28%)
Query: 84 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA-- 139
NE+ + + L +E+G +HGF+++ G + D+ + + + Y N + A
Sbjct: 150 NEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFD--QDVYVGTSLIDFYSKNGNIEEARL 207
Query: 140 ---------------MISGYAKNGYAEEAVKLFP-------------------------- 158
+I+GY K G + +++LF
Sbjct: 208 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 267
Query: 159 ----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
K + Y+ + +V V VLID Y KC V FD+ + K+++ + MI G
Sbjct: 268 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 327
Query: 215 Y--GLHEWSA---FGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLE-- 266
Y +W A FG + L + T++ SC E LEQG+ VH + IK LE
Sbjct: 328 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 387
Query: 267 -----------LESDLLISLTAV--CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313
+S+LLI V + NV +NAMI GY+ EA++LF + M
Sbjct: 388 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHE-MR 446
Query: 314 YYIGK----------------------SEYRNNVI---------VNTVLIDMYAKCGSVD 342
+ K ++ N ++ V L+DMYAKCGS++
Sbjct: 447 VRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIE 506
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------- 391
A F+ ++ +DVV ++M + HG EE +F + K GI+P +
Sbjct: 507 EARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 566
Query: 392 ------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
+HYA VV LL R+G A +FI MPIE V R
Sbjct: 567 HAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWR 626
Query: 428 ALLSAWKI 435
+LLSA +I
Sbjct: 627 SLLSACRI 634
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/433 (23%), Positives = 166/433 (38%), Gaps = 99/433 (22%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 130
L + E+ L S + KI+HG +I GL+ ++ L L VC
Sbjct: 45 LRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNAR 104
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLF-------------------------- 157
N+ ++M+S Y++ GY+EEA+ +F
Sbjct: 105 VVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQL 164
Query: 158 -----PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI 212
+ ++ +S + +V V T LID Y+K G+++ A + FD+ +K V + +I
Sbjct: 165 GVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTII 224
Query: 213 VGYGLHEWSAFGSFDGLLSNEENE-------YGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
GY SA S + E + L LEFLE GK +H ++++ G
Sbjct: 225 AGYTKCGRSAV-SLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGT 283
Query: 266 ELE---SDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF-- 308
E++ ++LI C N+ W MISGY +N + EA+KLF
Sbjct: 284 EMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGE 343
Query: 309 ----------------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+ + Y K+ ++ V LIDMYAK
Sbjct: 344 MNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNL 403
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
+ A FD +++V+ +AM GY E LFH +R +P +A ++
Sbjct: 404 LIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITA 463
Query: 401 LARAGYSNHAFKF 413
+ H +F
Sbjct: 464 ASNLASLRHGQQF 476
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 117/292 (40%), Gaps = 75/292 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFD------- 48
M+ V P+ VL AC L L G ++H + G +V L D
Sbjct: 243 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNR 302
Query: 49 -----GLFDRTIV-------FLDLYHLWSRTEWSA---FGSFDGLLSNEENEYGTALDCS 93
LFD+ +V + ++ + +W A FG + L + T++ S
Sbjct: 303 VKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTS 362
Query: 94 C-DLEFLEQGKIVHGFMIKLGLE-------------LESDLLISLTAV--CRYQPNVTLR 137
C E LEQG+ VH + IK LE +S+LLI V + NV
Sbjct: 363 CGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISY 422
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGK----------------------SEYRNNVI 175
NAMI GY+ EA++LF + M + K ++ N ++
Sbjct: 423 NAMIEGYSSQEKLSEALELFHE-MRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLV 481
Query: 176 ---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V L+DMYAKCGS++ A F+ ++ +DVV ++MI + H
Sbjct: 482 KMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQH 533
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 146/613 (23%), Positives = 231/613 (37%), Gaps = 179/613 (29%)
Query: 3 VAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVC------YLFDGLFD 52
VA AP+GCT VLKAC A G VHG G LV Y GL D
Sbjct: 156 VAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLD 215
Query: 53 RTI--------------------------VFLDLYHLWSRTEWSAFGSFDGLLSNEENEY 86
+ +FL+ L+ R + DG N
Sbjct: 216 SALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQ------SDGFSMNSYTTV 269
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVCRYQPNVTLR------- 137
G C+ +L L G+ +H ++K G E ++ + L+ + A C + + LR
Sbjct: 270 GVLQVCA-ELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGW-VDSALRVFREIGD 327
Query: 138 ------NAMISGYAKNGYAEEAVKLFPKWMD----------------------------- 162
N+M+S Y +N EA+ F + +
Sbjct: 328 KDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREV 387
Query: 163 -YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
Y K +++ + L+DMY KC SV+ + FDR KD V + +I Y + S
Sbjct: 388 HAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYA--QSS 445
Query: 222 AFGSFDGLLSNEENE--------YGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDL 271
+ G + E G+ L+ L+ + K VH + I+ GL + +
Sbjct: 446 RYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNR 505
Query: 272 LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----- 314
+I + C + ++ W +M++ +A+NG EAV LF K ++
Sbjct: 506 IIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPD 565
Query: 315 -------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
++ + ++ V + L+DMY+ CGS++ A FD
Sbjct: 566 SVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFD 625
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------ 391
KDVV+ +AM G+HG G++ +F + + G+ P H
Sbjct: 626 EAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDE 685
Query: 392 ------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+HYA VVDLL R+G + A+KFI +MP+E + V ALL A
Sbjct: 686 GKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGAC 745
Query: 434 KIPMQQWENMLQT 446
+I M+ T
Sbjct: 746 RIHKNHELAMIAT 758
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 113/288 (39%), Gaps = 66/288 (22%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE---WSAFGSFDGLLSNEE 234
T L+ MY KCG + A FD + V +A+I G L A G + + ++E
Sbjct: 97 TKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALI-GACLSSGGAGEAVGVYRAMRASEP 155
Query: 235 NEYGTALDCSCDLEFLEQ----------GKIVHGFMIKLGLE---LESDLLISLTAVC-- 279
G A D C L + + G VHG +K GL+ L ++ L+ + A C
Sbjct: 156 VA-GAAPD-GCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGL 213
Query: 280 -----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----- 323
R +V WN+ ISG +NG EA+ LF + + Y
Sbjct: 214 LDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQ 273
Query: 324 -------------------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
N+ N +L+ MYA+CG VD A F DKD +
Sbjct: 274 VCAELAQLNHGRELHAALLKCGTEFNIQCNALLV-MYARCGWVDSALRVFREIGDKDYIS 332
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
++M Y + L E F + ++G P H A +V LL+ G+
Sbjct: 333 WNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDH---ACIVSLLSAVGH 377
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 148/571 (25%), Positives = 222/571 (38%), Gaps = 163/571 (28%)
Query: 2 QVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVF 57
++ W+ P+ T P VLKAC +PSL G VH + + G +C ++ R
Sbjct: 120 RLGWL-PDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGAL 178
Query: 58 LDLYHLWSRT---EWSAFGSFDGLLSN--EENEYGTALDCS------------------- 93
D + ++ + S++ +L+ + + TAL +
Sbjct: 179 DDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLV 238
Query: 94 -----CDLEF-LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKN 147
C F L+ GK VHGF ++ GL +V + NA++S YAK
Sbjct: 239 NILPACASVFALQHGKQVHGFSVRNGL----------------VDDVFVGNALVSMYAKC 282
Query: 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF----DRTLDK 203
EA K+F + + +V+ ++ Y++ GS D A F + +
Sbjct: 283 SKMNEANKVF---------EGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKL 333
Query: 204 DVVMRSAMIVGYGL--HEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVH 257
DV+ SA+I GY H + A F + L + L + L GK H
Sbjct: 334 DVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 393
Query: 258 GFMIKLGLEL-----ESDLL-----ISLTAVCRY--------------QPNVTLWNAMIS 293
++IK L L E DLL I + A C+ NV W MI
Sbjct: 394 AYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIG 453
Query: 294 GYAKNGYAEEAVKLFP--------------------------------KWMDYYIGKSEY 321
GYA++G A +A+KLF + + Y ++E
Sbjct: 454 GYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNEN 513
Query: 322 RNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ V+ V LIDMY+K G +D A FD ++VV +++ GYG+HG GEE LF
Sbjct: 514 ESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFD 573
Query: 381 HIRK------------------------------------HGIEPRHQHYARVVDLLARA 404
++K GI P +HYA +VDLL RA
Sbjct: 574 QMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRA 633
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G N A + I NM +E V ALLSA +I
Sbjct: 634 GRLNEAMELIKNMSMEPTAVVWVALLSASRI 664
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 137/548 (25%), Positives = 218/548 (39%), Gaps = 139/548 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLY 61
V PN T P VLKAC L ++ G +H G VC + + + ++
Sbjct: 105 VRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQ 164
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCD--LEFLEQGKIVHGFMIKLGLELESD 119
L+S +++ +++ G +L CD ++ + Q M + G+ S
Sbjct: 165 RLFSSMSHRDVVAWNAMIA------GCSLYGLCDDAVQLIMQ-------MQEEGICPNSS 211
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
++ + P V A+ G A +GY + + N V+V T
Sbjct: 212 TIVGVL------PTVGEAKALGHGKALHGYCV---------------RRSFDNGVVVGTG 250
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENE- 236
L+DMYAKC + A FD ++ V SAMI GY + A FD ++ + +
Sbjct: 251 LLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDP 310
Query: 237 ----YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC---------- 279
G+ L L L +G+ +H ++IKLG L+ + L+S+ A C
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFF 370
Query: 280 -RYQPNVTL-WNAMISGYAKNGYAEEAVKLF---------PKWMDY-------------- 314
P ++ ++A++SG +NG A A+ +F P
Sbjct: 371 DEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430
Query: 315 -------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
Y+ + + ++ LIDMY+KCG + A F+R D+V +AM +GYG
Sbjct: 431 HGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 490
Query: 368 LHGLGEEGWVLFHHI------------------------------------RKHGIEPRH 391
+HGLG E LFH + R I PR
Sbjct: 491 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRM 550
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGID 451
+H +VD+L RAG + A FI NMP E + + ALLSA +I + I+
Sbjct: 551 EHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH-----------KNIE 599
Query: 452 EGEKTDKR 459
GE+ K+
Sbjct: 600 LGEEVSKK 607
>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 817
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 130/564 (23%), Positives = 225/564 (39%), Gaps = 145/564 (25%)
Query: 42 LVCYLFDGLFDRTIVFLDLYHLW-SRTE--WSAFGSFDGLLS----NEENEYGTALDCSC 94
LV +FD + RT+V + W RTE A F ++ +
Sbjct: 162 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 221
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLR 137
L + +VHG ++KLG E +DL + +A+ Y + N +
Sbjct: 222 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVW 281
Query: 138 NAMISGYAKNGYAEEAVKLF-------------------------------PKWMDYYIG 166
N MIS + +N ++ E ++LF + + ++
Sbjct: 282 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 341
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAF 223
K+ V V LI MY++C S+D + FD +KDVV + MI + GL++ +
Sbjct: 342 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 401
Query: 224 GSFDGLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE--SDLLISLTAV 278
++ + + L + DL + GK HG++++ G++ E LI + A
Sbjct: 402 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAK 461
Query: 279 C--------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI-------- 316
++ + WN+M+SGY +NG ++A + + +D +
Sbjct: 462 SGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLA 521
Query: 317 --------------GKS----EYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
GK RN NV V T LIDMY+K GS+ A F + +K
Sbjct: 522 SILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEK 581
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------- 386
+V S M +GYG HG+GE +FH ++K G
Sbjct: 582 SIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIF 641
Query: 387 --------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR-LSVRRALLSAWKIPM 437
I+P +H+ V D+L RAG + A++F++ + + + + +LL+A +I
Sbjct: 642 ESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRI-H 700
Query: 438 QQWENMLQTIRGIDEGEKTDKRPG 461
+Q+E + + E EK + + G
Sbjct: 701 KQFELGKLVAKKLLEMEKINGKTG 724
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 107/280 (38%), Gaps = 67/280 (23%)
Query: 175 IVNTVLIDMYAKCGSV-------------DLAPMFFDRTLDKDVVMRSAMIVGYGLHE-- 219
IV L++MY+ C S DL FD + VV + +I Y E
Sbjct: 132 IVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERY 191
Query: 220 WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
A F ++ + L + +VHG ++KLG E +DL +
Sbjct: 192 AEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVS 251
Query: 276 TAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------- 308
+A+ Y + N +WN MIS + +N ++ E ++LF
Sbjct: 252 SAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAA 311
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ + ++ K+ V V LI MY++C S+D +
Sbjct: 312 IDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKI 371
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
FD +KDVV + M + +GL +E +LF+ ++K +
Sbjct: 372 FDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDL 411
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 133/586 (22%), Positives = 221/586 (37%), Gaps = 178/586 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M+ + PN T P+++ +C L + G +HG + LG LF G F+ +
Sbjct: 124 MRASEALPNHFTIPMIVASCAELELVNYGRSIHGLVSKLG-----LFSGSSAVGSSFVYM 178
Query: 61 YHLWSRTEWSAFGSFD---------------GLLSNEENEYGTALDCSCDLE-------- 97
Y E A+G FD G + N E++ G L+C C++
Sbjct: 179 YSKCGVLE-EAYGVFDEILFRDVVAWTALVIGCVQNGESKMG--LECLCEMHRIGGDGER 235
Query: 98 -----------------FLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRYQPNVTLR 137
L +G+ +HG ++K G+ ++ LL+S+ + C P R
Sbjct: 236 PNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCG-NPEEAHR 294
Query: 138 N-------------AMISGYAKNGYAEEAVKLF--------------------------- 157
+ +MIS Y++ G+A E + +F
Sbjct: 295 SFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMR 354
Query: 158 ---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
K I + Y + +V L+ MY K G + LA FF R +++ + M+ G
Sbjct: 355 VFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSG 414
Query: 215 YGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
YG ++ C +++ V+ +I + +L I+
Sbjct: 415 YG-----------------ATHLARSIHCYMIKNLMDENVSVNNSLIDM-YGKSGNLTIA 456
Query: 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM---------------------- 312
CR ++ WN +IS YA G+ EA+ L+ K +
Sbjct: 457 RRIFCRIPRDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLA 516
Query: 313 --------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
YI ++ N+ + T LIDMYAKCG ++ + F+ ++DV+ + M
Sbjct: 517 SLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMIS 576
Query: 365 GYGLHG-----------------------------------LGEEGWVLFHHIRKHGIEP 389
GYG+HG L +EG LF ++ + + P
Sbjct: 577 GYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAP 636
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDLL R+G A +++MPI V ALLS+ KI
Sbjct: 637 NLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKI 682
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 154/354 (43%), Gaps = 94/354 (26%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL 229
N+V V T L+DMY+ G A + FD + ++ +AMI GY + ++ F L
Sbjct: 279 NDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRL 338
Query: 230 LSNEEN-EYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--- 281
+ + + GT + CS LE G+I+H +I+ ELES L++S V Y
Sbjct: 339 VQSGSGFDSGTLVSLIRGCS-QTSDLENGRILHSCIIRK--ELESHLVLSTAIVDMYSKC 395
Query: 282 --------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------- 320
+ NV W AM+ G ++NGYAE+A+KLF + + + +
Sbjct: 396 GAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLV 455
Query: 321 -----------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDV 356
Y + ++ + LIDMYAKCG + A F+ KDV
Sbjct: 456 HCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDV 515
Query: 357 VMRSAMTVGYGLHGLG-----------------------------------EEGWVLFHH 381
++ ++M +GYG+HG G EEG LFH
Sbjct: 516 ILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHS 575
Query: 382 I-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ R H + P+H+HYA +VDL +RAG A + + MP + V ALLS +
Sbjct: 576 MERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCR 629
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 135/358 (37%), Gaps = 87/358 (24%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKSE 169
P + NAMI+G+ +N E +LF +D +G
Sbjct: 108 PETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEI 167
Query: 170 YRNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLH 218
R V V + +++ K G + A FD +KDVV +++I GY GL
Sbjct: 168 IRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLF 227
Query: 219 EWSAFGSF----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
W + F G L L + G H +++ LG+ + +L S
Sbjct: 228 -WESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTS 286
Query: 275 LT-----------------AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
L ++C ++ WNAMISGY +NG E+ LF + + G
Sbjct: 287 LVDMYSNLGDTGSAALVFDSMC--SRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSG 344
Query: 318 ------------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ E ++++++T ++DMY+KCG++ A +
Sbjct: 345 FDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIV 404
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
F R K+V+ +AM VG +G E+ LF +++ + +V A G
Sbjct: 405 FGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLG 462
>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 793
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 116/500 (23%), Positives = 204/500 (40%), Gaps = 138/500 (27%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAMI 141
+ +VHG ++KLG E +DL + +A+ Y + N + N MI
Sbjct: 202 FKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMI 261
Query: 142 SGYAKNGYAEEAVKLF-------------------------------PKWMDYYIGKSEY 170
S + +N ++ E ++LF + + ++ K+
Sbjct: 262 SAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVA 321
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
V V LI MY++C S+D + FD +KDVV + MI + GL++ + ++
Sbjct: 322 VTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYE 381
Query: 228 GLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE--SDLLISLTAVC--- 279
+ + L + DL + GK HG++++ G++ E LI + A
Sbjct: 382 MKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLI 441
Query: 280 -----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------------ 316
++ + WN+M+SGY +NG ++A + + +D +
Sbjct: 442 EAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILP 501
Query: 317 ----------GKS----EYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
GK RN NV V T LIDMY+K GS+ A F + +K +V
Sbjct: 502 ACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVT 561
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHG-------------------------------- 386
S M +GYG HG+GE +FH ++K G
Sbjct: 562 YSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMR 621
Query: 387 ----IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR-LSVRRALLSAWKIPMQQWE 441
I+P +H+ V D+L RAG + A++F++ + + + + +LL+A +I +Q+E
Sbjct: 622 TVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIH-KQFE 680
Query: 442 NMLQTIRGIDEGEKTDKRPG 461
+ + E EK + + G
Sbjct: 681 LGKLVAKKLLEMEKINGKTG 700
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 107/280 (38%), Gaps = 67/280 (23%)
Query: 175 IVNTVLIDMYAKCGSV-------------DLAPMFFDRTLDKDVVMRSAMIVGYGLHE-- 219
IV L++MY+ C S DL FD + VV + +I Y E
Sbjct: 108 IVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERY 167
Query: 220 WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
A F ++ + L + +VHG ++KLG E +DL +
Sbjct: 168 AEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVS 227
Query: 276 TAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------- 308
+A+ Y + N +WN MIS + +N ++ E ++LF
Sbjct: 228 SAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAA 287
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ + ++ K+ V V LI MY++C S+D +
Sbjct: 288 IDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKI 347
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
FD +KDVV + M + +GL +E +LF+ ++K +
Sbjct: 348 FDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDL 387
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 172/422 (40%), Gaps = 117/422 (27%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FP---------------KW 160
+ +V L N +I GYA G EEA+ L FP K
Sbjct: 90 KRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKE 149
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ I K + ++V V + L+ MY++ G + F + +++V +A+I GY + +
Sbjct: 150 VHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRY 209
Query: 221 --SAFGSFDGLLSNEENEYG----TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--- 271
G F ++ + + L LEFL GK++HG+ IKLG++ + L
Sbjct: 210 FKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNA 269
Query: 272 LISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK--------- 310
LI+L C N+ WNAMI+ Y +N AVKLF +
Sbjct: 270 LIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFD 329
Query: 311 ---------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
WM + + NV + LIDMYAKCG++DLA F+
Sbjct: 330 YITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFE 389
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------RH------ 391
R + VV ++M HG GE+ LF ++ G++P RH
Sbjct: 390 RLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEE 449
Query: 392 ------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+H A +VDLL RAG A++FI MP+E +SV ALL +
Sbjct: 450 GRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSC 509
Query: 434 KI 435
+I
Sbjct: 510 RI 511
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 113/291 (38%), Gaps = 73/291 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LVC------- 44
M A + P+ T P V+++C L +L G VH I GF LV
Sbjct: 119 MHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGE 178
Query: 45 -----YLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYG----TALDC 92
+F + R IV ++ +R G F ++ + + L
Sbjct: 179 TLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPA 238
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLR-------------- 137
LEFL GK++HG+ IKLG++ + L +L A+ NV T R
Sbjct: 239 CAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSW 298
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
NAMI+ Y +N AVKLF +WM + +
Sbjct: 299 NAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKR 358
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
NV + LIDMYAKCG++DLA F+R + VV ++MI H
Sbjct: 359 KGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASH 409
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 129/326 (39%), Gaps = 73/326 (22%)
Query: 172 NNVIVNTVLIDMYAKC--GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
N++++T LI + A C ++D A FD+ +DV + + +I GY + G +
Sbjct: 59 QNLLLSTKLI-ITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGY-----ADAGPCEEA 112
Query: 230 LSNEENEYGTAL------------DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
L+ N +G L C+ L L +GK VH ++K G +SD+ + +
Sbjct: 113 LALYSNMHGAGLFPDNYTFPFVVRSCAV-LSALREGKEVHCNIVKHG--FDSDVFVQSSL 169
Query: 278 VCRYQP-----------------NVTLWNAMISGYAKNGYAEEAVKLFP----------- 309
V Y N+ W A+I+GY +N Y +E + +F
Sbjct: 170 VAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNA 229
Query: 310 -------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
K + Y K +V + LI +Y KCG+V+ A FD
Sbjct: 230 VTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDG 289
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
+ +++V +AM Y + G LF ++ ++ + V+ A G N
Sbjct: 290 MVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTG 349
Query: 411 ---FKFIMNMPIELRLSVRRALLSAW 433
+ + +E+ +S+ AL+ +
Sbjct: 350 RWMHELVKRKGLEINVSITNALIDMY 375
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 139/568 (24%), Positives = 225/568 (39%), Gaps = 163/568 (28%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYL------------------ 46
V + T P +LKAC +L +G +H +I G L Y+
Sbjct: 65 VPSDAYTFPSLLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINFYAKFGFADVAR 124
Query: 47 --FDGLFDRTIV-FLDLYHLWSRTEW--SAFGSFD-----GLLSNEENEYGTALDCS--C 94
FD + +R +V + + +SRT AF FD G+ + S
Sbjct: 125 KVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELA 184
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------QPNVTLRNAMIS 142
++ L I++GFM + L S+ ++S+ CR Q ++ N+++S
Sbjct: 185 HVQCLHGSAILYGFMSDINL---SNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVS 241
Query: 143 GYAKNGYAEEAVKLF-----------PKWMDYYIGKSEYRN------------------- 172
YA+ GY E + L P+ + + R
Sbjct: 242 AYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDL 301
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+ V T LI MY K G++D+A F+R+LDKDVV+ +AMI G + + A F +L
Sbjct: 302 DAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQML 361
Query: 231 S----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY-- 281
+ + + L G VHG+M + L ++ + L+++ A C +
Sbjct: 362 KFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLD 421
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
+ N+ WNAMI+GYA+NGY +A+ LF
Sbjct: 422 QSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCA 481
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
KW+ ++ ++ R ++V+T L+DMY KCG +D+A F++ D+V SA
Sbjct: 482 STGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSA 541
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------------ 391
+ VGYG HG GE + + G++P H
Sbjct: 542 IIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDF 601
Query: 392 ------QHYARVVDLLARAGYSNHAFKF 413
+H+A VVDLL+RAG A+
Sbjct: 602 GIAPNLEHHACVVDLLSRAGRVEEAYNL 629
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 156/362 (43%), Gaps = 90/362 (24%)
Query: 109 MIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 168
+ LGL L +L+S ++ Y + +++I+ YAK G+A+ A K+F D+ +
Sbjct: 84 LFSLGLSLHQRILVSGLSLDAY-----IASSLINFYAKFGFADVARKVF----DFMPER- 133
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG--YGLHEWSAFGSF 226
NV+ T +I Y++ G V A FD + + S ++ +G+ E
Sbjct: 134 ----NVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSE------- 182
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY----- 281
L++ + +G+A I++GFM + L S+ ++S+ CR
Sbjct: 183 ---LAHVQCLHGSA--------------ILYGFMSDINL---SNSMLSMYGKCRNIEYSR 222
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLF-----------PKWMDYYIGKSEYRN 323
Q ++ WN+++S YA+ GY E + L P+ + + R
Sbjct: 223 KLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRG 282
Query: 324 -------------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ V T LI MY K G++D+A F+R+LDKDVV+ +AM
Sbjct: 283 ELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMIS 342
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSN-----HAFKFIMNMPI 419
G +G ++ +F + K G++ A V+ A+ G N H + F +P+
Sbjct: 343 GLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPM 402
Query: 420 EL 421
++
Sbjct: 403 DI 404
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 137/585 (23%), Positives = 221/585 (37%), Gaps = 160/585 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSL----------GFLVCYLFDGLFDRTIVF 57
PN VL+AC ++ +G +VHG L + Y G D ++
Sbjct: 118 PNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLV 177
Query: 58 LDLYHLWSRTEWS--------------AFGSFD--GLLSNEENEY--GTALDCSCDLEFL 99
+ + W+ A FD G+ + + +A+ L FL
Sbjct: 178 FHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFL 237
Query: 100 EQGKIVHGFMIKLGLELES---DLLISLTAVCRYQP------------NVTLRNAMISGY 144
E G+ +HG+ + E ++ ++LI L C N+ MISGY
Sbjct: 238 EGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGY 297
Query: 145 AKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNNV 174
+N + EA+ +F + + ++ K++ +
Sbjct: 298 MQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADE 357
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL--- 229
V LIDMYAKC + A FD + D + +AMI GY + A F +
Sbjct: 358 YVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFF 417
Query: 230 -LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR----- 280
L + + L S +E K +HG +IK G L+ + LI + + C
Sbjct: 418 SLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDA 477
Query: 281 -------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------------------- 312
+ ++ +WN+MI G+A+N EEA+KLF + +
Sbjct: 478 KTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTL 537
Query: 313 ---------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+I K+ N+ V+ LIDMYAKCG + M F+ T +DV+ ++M
Sbjct: 538 ASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMI 597
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------------------- 391
Y HG EE +F + + +EP +
Sbjct: 598 TTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDI 657
Query: 392 ----QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+HYA VV+L R+G + A +FI MPI+ +V R+LLSA
Sbjct: 658 EPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSA 702
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 147/588 (25%), Positives = 239/588 (40%), Gaps = 160/588 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY-----------L 46
P+G T P V+K+C AL +L +G VH +LG + Y +
Sbjct: 145 PDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREV 204
Query: 47 FDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDC---SCDLEF-L 99
FDG+ +R V ++ ++ + SA G F + ++ + L C C E L
Sbjct: 205 FDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADL 264
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGY 144
G +H +K GLE E ++ L+S+ A C+ + ++ N MISG
Sbjct: 265 LSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGC 324
Query: 145 AKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNNV 174
+NG ++A++LF K + YI ++ +V
Sbjct: 325 VQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDV 384
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLS- 231
+ + L+D+Y KC V +A FD T DVV+ S MI GY L+ S A F LL+
Sbjct: 385 FLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLAL 444
Query: 232 ---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLTAVCRYQ-- 282
+ L + + G+ +HG+++K E +ES L+ + R
Sbjct: 445 GIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLS 504
Query: 283 ---------PNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------------------- 312
+ WN+MIS +A+NG EEA+ LF + +
Sbjct: 505 HYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGL 564
Query: 313 --DYY-------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
YY I K R ++ + LIDMY KCG+++LA F+ +K+ V +++
Sbjct: 565 PAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSII 624
Query: 364 VGYGLHGLGEEGWVLFHHIRKHG------------------------------------I 387
YG HGL +E L +++ G I
Sbjct: 625 SAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHI 684
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP+ +H + +VDL +RAG + A +FI +MP + + ALL A ++
Sbjct: 685 EPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRV 732
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 184/429 (42%), Gaps = 103/429 (24%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC-------RYQPNVTLR-- 137
+ + +LE L GK HG +IK+ L + +L SL A C R N+ R
Sbjct: 143 IKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDV 202
Query: 138 ---NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 164
N+MI+ + + G EEA++LF +W+ Y
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEW-SA 222
I ++ ++ ++ ++DMY KCGSV+ A FD+ +KD+V + M+VGY + E+ +A
Sbjct: 263 IERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAA 322
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
G FD + + + + + + + GK K LEL +L +S TA +
Sbjct: 323 QGIFDAMPNQDIAAWNALISA-----YEQCGK------PKEALELFHELQLSKTA----K 367
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
P+ + +S A+ G + W+ YI K + N + T LIDMY KCG +
Sbjct: 368 PDEVTLVSTLSACAQLGAMD-----LGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQ 422
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------ 384
A M F KDV + SAM G +HG G++ LF +++
Sbjct: 423 KALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACS 482
Query: 385 ------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
+G+ P +HYA +VD+L RAG A + I MP+ SV
Sbjct: 483 HVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVW 542
Query: 427 RALLSAWKI 435
ALL A I
Sbjct: 543 GALLGACTI 551
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 192/472 (40%), Gaps = 137/472 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTLRNAMI 141
LE+GK +HG L ++SD+L++ + Y ++ +A+I
Sbjct: 345 LEKGKEIHG--CALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402
Query: 142 SGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYR 171
+ + GY EEA+ LF K + + K++
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD 462
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGL 229
+++ T L+ MYAKCG A F+R +D+V +++I GY ++A F L
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522
Query: 230 -LSNEENEYGTALDC--SCDL-EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQ 282
LS + GT + +C L L+QG +HG ++KLG E + + LI + A C
Sbjct: 523 RLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSL 582
Query: 283 PNVTL-------------WNAMISGYAKNGYAEEAVKLF---------PKWMDYY----- 315
P+ WN +I+ Y +NG+A+EA+ F P + +
Sbjct: 583 PSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA 642
Query: 316 ----------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
I + + +N +V LIDMYAKCG + + F+ KD V
Sbjct: 643 AAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSW 702
Query: 360 SAMTVGYGLHGLG-----------------------------------EEGWVLFHHIR- 383
+AM GY +HG G EEG +FH +
Sbjct: 703 NAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSD 762
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K+ I+P +HYA +VDLL RAG + FI MP+E V ALL + ++
Sbjct: 763 KYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRM 814
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 55/267 (20%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL-LSN 232
V+ LID+Y+KCG VD+A FD+ +D+D V M+ GY + FD + L N
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324
Query: 233 EENEYGTALD---CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP------ 283
+A+ + + LE+GK +HG L ++SD+L++ + Y
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHG--CALQQRIDSDILVATPLMVMYAKCGETEK 382
Query: 284 -----------NVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
++ W+A+I+ + GY EEA+ LF
Sbjct: 383 AKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACAD 442
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
K + + K++ +++ T L+ MYAKCG A F+R +D+V +++
Sbjct: 443 LSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSL 502
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEP 389
GY G +F+ +R I P
Sbjct: 503 INGYAQIGDPYNAIDMFYKLRLSAINP 529
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 132/329 (40%), Gaps = 58/329 (17%)
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
W I + +V + L+DMY+K G + A FD+ +DVV +AMI G E
Sbjct: 150 WFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 209
Query: 220 --WSAFGSFDGL-LSNEENEYGTALDC---SCDLEFLEQGKIVHGFMIKLGLELE-SDLL 272
A F + L E + L+ C L +E + +HG++ + S+ L
Sbjct: 210 DPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGL 269
Query: 273 ISLTAVCR-------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKW-------- 311
I L + C Q +V+ W M++GYA NG E ++LF K
Sbjct: 270 IDLYSKCGDVDVARRVFDQMVDQDDVS-WGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328
Query: 312 --------------MDYYIGK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+D GK ++++V T L+ MYAKCG + A F
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV----DL-LARA 404
+D+V SA+ G EE LF ++ ++P ++ DL L +
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKL 448
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAW 433
G S H F +M + LS AL+S +
Sbjct: 449 GKSIHCFTVKADMDSD--LSTGTALVSMY 475
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 137/358 (38%), Gaps = 99/358 (27%)
Query: 96 LEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR-------------NA 139
L L+QG +HG ++KLG E + + LI + A C P+ N
Sbjct: 544 LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603
Query: 140 MISGYAKNGYAEEAVKLF---------PKWMDYY---------------------IGKSE 169
+I+ Y +NG+A+EA+ F P + + I +
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMG 663
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +N +V LIDMYAKCG + + F+ KD V +AM+ GY +H G D
Sbjct: 664 FLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVH-----GHGDRA 718
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
++ + M + ++++S +S+ + CR+
Sbjct: 719 IA------------------------LFSLMQESQVQIDSVSFVSVLSACRHX------- 747
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
G EE K+F D Y K + + ++D+ + G D F
Sbjct: 748 ---------GLVEEGRKIFHSMSDKYHIKPDLEH----YACMVDLLGRAGLFDETLGFIK 794
Query: 350 -RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-QHYARVVDLLARAG 405
++ D + A+ +H + G V H+ K +EPR+ H+ + + A++G
Sbjct: 795 VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVK--LEPRNPAHFVVLSSIYAQSG 850
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 189/473 (39%), Gaps = 137/473 (28%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQPNVTLR-------------NAMIS 142
L G+ VH + GL ES +L + CR +P R NA+++
Sbjct: 32 LATGRAVHAQLEARGLASESIASTALANMYFKCR-RPADARRVFDRMPSRDRVAWNAVVA 90
Query: 143 GYAKNGYAEEA---------------------VKLFPKWMDY-----------YIGKSEY 170
GYA+NG A V + P D + ++
Sbjct: 91 GYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGL 150
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDG 228
V V+T ++D Y KCG+V+ A FD ++ V +AMI GY + A F
Sbjct: 151 DELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWR 210
Query: 229 LLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY 281
++ + AL +L +L++ + VH ++++GL ++ LI+ A C+
Sbjct: 211 MVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKR 270
Query: 282 -------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------ 310
+ WNAMI G+ +N E+A +LF +
Sbjct: 271 ADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIP 330
Query: 311 ------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
W+ Y + + +V V T LIDMY+KCG V +A FD D+ V+
Sbjct: 331 AVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVIT 390
Query: 359 RSAMTVGYGLHGLGE-----------------------------------EGWVLFHHIR 383
+AM GYG HG G+ EG F ++
Sbjct: 391 WNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMK 450
Query: 384 K-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K +G+EP +HY +VDLL RAG + A+ FI NMPIE +SV A+L A K+
Sbjct: 451 KDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKL 503
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 137/583 (23%), Positives = 234/583 (40%), Gaps = 163/583 (27%)
Query: 14 PLVLKACVALPSLLMGPRVHGQIFSLGFL---------------------VCYLFDGLFD 52
P VLKAC L +G +VHG++ GF C FD +
Sbjct: 104 PSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPI 163
Query: 53 RTIVF---LDLYHLWSRTEWSAFGSFDGLLSNE-ENEYGTALD----CSCDLEFLEQGKI 104
R +V + L + + F ++S E + T L CS +L L G+
Sbjct: 164 RDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACS-ELGSLRLGRS 222
Query: 105 VHGFMIKLGLELESDL----------LISLTAVCRYQPNVTLR-----NAMISGYAKNGY 149
VHG++++ +E + L L L + R NV R MIS Y ++G
Sbjct: 223 VHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGC 282
Query: 150 AEEAVKLFPKWMDY-----------------YIGKSEYRNNV--------------IVNT 178
+EA+ +F K ++ +G+ + +V +
Sbjct: 283 FQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGP 342
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAF----GSFDGLLS 231
L+++YA G++ F+ +K ++ + +I + G E + GL+
Sbjct: 343 ALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMP 402
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVCRY-------- 281
+ + + C + F + G +HG++IK G + + LI + A C +
Sbjct: 403 DSYSLASSLSACG-TISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMF 461
Query: 282 ----QPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------------- 309
+ ++ WN+MI G+++NGY+ EA+ LF
Sbjct: 462 EKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLE 521
Query: 310 --KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
KW+ + + R + ++T L DMY+KCG + +A FDR ++ +V S M GYG
Sbjct: 522 KGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYG 581
Query: 368 LHG------------LG-----------------------EEGWVLFHHIRKHGIEPRHQ 392
+HG LG EEG + F+ + + G+EP+H
Sbjct: 582 MHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHD 641
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H+A +VDLL+RAG N A++ I ++P S+ ALL+ +I
Sbjct: 642 HFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRI 684
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 110/306 (35%), Gaps = 63/306 (20%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSN 232
+T LI+ YA+ G + + FD D M +I Y G E A + ++
Sbjct: 35 ASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFE-EAVSLYHEMVYQ 93
Query: 233 EENE-----YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP---- 283
++ + + + L L G VHG +IK G ESD ++ + +C Y
Sbjct: 94 DQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCG--FESDAVVETSLLCMYGEMSCL 151
Query: 284 -------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------------- 314
+V W++++ + +NG A E + +F + +
Sbjct: 152 DDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEAC 211
Query: 315 --------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
Y+ + E +N +N LI MY K G + A F+ + +
Sbjct: 212 SELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWT 271
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR-----AGYSNHAFKFIM 415
M Y G +E +F +++ +EP V+ AR G S H F
Sbjct: 272 PMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRR 331
Query: 416 NMPIEL 421
M EL
Sbjct: 332 AMDPEL 337
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 135/570 (23%), Positives = 230/570 (40%), Gaps = 158/570 (27%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFL---------------------VCY---LFDGLF 51
+++ C+ S G +H Q+ S G+ +CY LF+ +
Sbjct: 77 LIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMP 136
Query: 52 DRTIVFLDLYHL-WSRTE--WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKI 104
+R + + L ++R + A+G FD +L + + +AL L + GK
Sbjct: 137 ERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQ 196
Query: 105 VHGFMIKLGLELES---DLLISLTAVCRYQP------------NVTLRNAMISGYAKNGY 149
VH +I G + ++ + LI + A C + N N++IS A+ G+
Sbjct: 197 VHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH 256
Query: 150 AEEAVKLFPKWMDYYIG--------------------------------KSEYRNNVIVN 177
+A+ LF + + G ++ N+IV
Sbjct: 257 FNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 316
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSNEEN 235
T L+ MY++CG ++ A F+R +++ ++MI GY + A F + N
Sbjct: 317 TELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLN--- 373
Query: 236 EYGTALDC--------SC-DLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---- 279
G DC SC L ++G+ +H F+++ +E E L L+ + A C
Sbjct: 374 --GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMD 431
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------- 322
+ N LWN++++GYA G +E+ F + ++ I EY
Sbjct: 432 YAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDI---EYDVLTMVTI 488
Query: 323 -NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
N +++ T L+DMY+KCG++ A FD K++V +AM GY HG +E +L+
Sbjct: 489 VNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEE 548
Query: 382 IRKHG------------------------------------IEPRHQHYARVVDLLARAG 405
+ K G IE + +HY +VDLL RAG
Sbjct: 549 MPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAG 608
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A +F+ MPIE +S ALL A ++
Sbjct: 609 RLEDAKEFVEKMPIEPEVSTWGALLGACRV 638
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 86/358 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WS 221
+I +S +R+++++ L++MYAKCGS++ A F++ +D V + +I GY H+
Sbjct: 85 HILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCD 144
Query: 222 AFGSFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A F+ +L S E + + + G +HGF +K G + + +L
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204
Query: 278 V-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
+ RY N WNA+I+G+A+ E+A++LF
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KW+ Y+ KS + L+DMYAK GS+ A FDR
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324
Query: 353 DKDVVMRSAMTVGYGLHGLG-----------------------------------EEGWV 377
+DVV +++ Y HG G +EGW
Sbjct: 325 KRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ ++K GI P HY VVDLL RAG N A +FI MPIE ++ +ALL+A ++
Sbjct: 385 YYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 442
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 43/194 (22%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIV 56
+PN T V+KA A G ++HG GF L Y GL D +
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQL 217
Query: 57 FLDLYHLWSRTEWSAFGS--------------FDGLLSN----EENEYGTALDCSCDLEF 98
D + W+A + F G+L + Y + F
Sbjct: 218 VFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGF 277
Query: 99 LEQGKIVHGFMIKLGLEL---ESDLLISLTAVCRY------------QPNVTLRNAMISG 143
LEQGK VH +MIK G +L + L+ + A + +V N++++
Sbjct: 278 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 337
Query: 144 YAKNGYAEEAVKLF 157
YA++G+ +EAV F
Sbjct: 338 YAQHGFGKEAVWWF 351
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 153/358 (42%), Gaps = 86/358 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WS 221
++ +S +R+++++N L++MYAKCGS++ A FD+ ++D V + +I GY H+ +
Sbjct: 76 HLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFD 135
Query: 222 AFGSFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A F+ +L S E + + + G +HGF +K G + + +L
Sbjct: 136 ALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 195
Query: 278 V-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
+ RY N WNA+I+G+A+ E+A++LF
Sbjct: 196 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFS 255
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KW+ Y+ KS + L+DMYAK GS+ A FDR
Sbjct: 256 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 315
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------- 391
+DVV +++ Y HG G E F +R+ GI P
Sbjct: 316 KRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWH 375
Query: 392 --------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HY +VDLL RAG N A +FI MPIE ++ +ALL+A ++
Sbjct: 376 YYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 433
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 80/220 (36%), Gaps = 53/220 (24%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIV 56
+PN T V+KA A G ++HG GF L Y GL D +
Sbjct: 149 SPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQL 208
Query: 57 FLDLYHLWSRTEWSAFGS--------------FDGLLSN----EENEYGTALDCSCDLEF 98
D + W+A + F G+L Y + F
Sbjct: 209 VFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGF 268
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
LEQGK VH +MIK G + L++ N ++ YAK+G +A K+F
Sbjct: 269 LEQGKWVHAYMIKSG-----EKLVAFAG-----------NTLLDMYAKSGSIHDARKIFD 312
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
+ + +V+ L+ YA+ G + A +F+
Sbjct: 313 RLA---------KRDVVSWNSLLTAYAQHGFGNEAVCWFE 343
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 86/358 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WS 221
+I +S +R+++++ L++MYAKCGS++ A F++ +D V + +I GY H+
Sbjct: 85 HILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCD 144
Query: 222 AFGSFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A F+ +L S E + + + G +HGF +K G + + +L
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204
Query: 278 V-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
+ RY N WNA+I+G+A+ E+A++LF
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KW+ Y+ KS + L+DMYAK GS+ A FDR
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324
Query: 353 DKDVVMRSAMTVGYGLHGLG-----------------------------------EEGWV 377
+DVV +++ Y HG G +EGW
Sbjct: 325 KRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ ++K GI P HY VVDLL RAG N A +FI MPIE ++ +ALL+A ++
Sbjct: 385 YYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 442
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 43/191 (22%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIV 56
+PN T V+KA A G ++HG GF L Y GL D +
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQL 217
Query: 57 FLDLYHLWSRTEWSAFGS--------------FDGLLSN----EENEYGTALDCSCDLEF 98
D + W+A + F G+L + Y + F
Sbjct: 218 VFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGF 277
Query: 99 LEQGKIVHGFMIKLGLEL---ESDLLISLTAVCRY------------QPNVTLRNAMISG 143
LEQGK VH +MIK G +L + L+ + A + +V N++++
Sbjct: 278 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 337
Query: 144 YAKNGYAEEAV 154
YA++G+ +EAV
Sbjct: 338 YAQHGFGKEAV 348
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 121/501 (24%), Positives = 205/501 (40%), Gaps = 142/501 (28%)
Query: 78 LLSNEENEYGTALDCSCDL------EFLEQGKIVHGFMIKLGLELESDL---LISLTAVC 128
LL+ EN + +C L EF+ GK VH IK+G E + + L+++ C
Sbjct: 230 LLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKC 289
Query: 129 RY------------QPNVTLRNAMISGYAKNGYAEEAVKLFP------------------ 158
+ + L NA+IS Y NGYA +A++++
Sbjct: 290 QMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVL 349
Query: 159 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
+ + I K ++++ + + L+ MY+K G + A F ++DVV
Sbjct: 350 TSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVV 409
Query: 207 MRSAMIVGYGLHE-----WSAFGSFDGLLSNEENEYGTALDCSCD-LEFLEQGKIVHGFM 260
++I G+ + F + + L +++ ++ +C LE ++ G +HGF+
Sbjct: 410 AWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFV 469
Query: 261 IKLGLELESDLLISLTAVCRYQP-----------------NVTLWNAMISGYAKNGYAEE 303
IK GL+L D+ ++ + + Y N+ WN++IS Y +N +
Sbjct: 470 IKSGLQL--DVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDL 527
Query: 304 AVKLFPKWM--DYYIGKSEYRN----------------------------NVIVNTVLID 333
++ LF + + D Y + + ++ V LID
Sbjct: 528 SINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLID 587
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG----------------------- 370
MY KCG + A F+R +K++V ++M GYG HG
Sbjct: 588 MYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVT 647
Query: 371 ------------LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
L EEG LF ++ K GIEPR +HY +VDL RAG A+ F+ NM
Sbjct: 648 FLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNM 707
Query: 418 PIELRLSVRRALLSAWKIPMQ 438
P+E S+ +LL + KI +
Sbjct: 708 PVEPDRSIWLSLLCSCKIHLN 728
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/436 (22%), Positives = 172/436 (39%), Gaps = 91/436 (20%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP------------- 132
Y + L L L+ GK +H +I GL SD I+ + + Y
Sbjct: 56 YPSLLKACASLSNLQYGKTIHSSIITTGLH--SDQYITSSLINIYVKCGTFTDAVKVFDQ 113
Query: 133 ---------NVTLRNAMISGYAKNGYAEEAVKLFP----------KWMDYYIGKSEYRNN 173
+VT+ N++I GY + G EE + F K + YI ++ +
Sbjct: 114 LPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKEGKQIHSYIVRNMLNFD 173
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHE-WSAFGSFDGLLS 231
+ T LID Y KCG A F + D+ ++V + MI G+G + W + LL+
Sbjct: 174 PFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEY-YLLA 232
Query: 232 NEENEYGTALDCSCDL------EFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY- 281
EN + +C L EF+ GK VH IK+G E + + L+++ C+
Sbjct: 233 KTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMI 292
Query: 282 -----------QPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+ LWNA+IS Y NGYA +A++++
Sbjct: 293 ESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSS 352
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+ + I K ++++ + + L+ MY+K G + A F ++DVV
Sbjct: 353 SMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWG 412
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL---LARAGYSNHAFKFIMNM 417
++ G+ + +E F + ++P A ++ L + F++
Sbjct: 413 SVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKS 472
Query: 418 PIELRLSVRRALLSAW 433
++L + V +LL +
Sbjct: 473 GLQLDVFVASSLLDMY 488
>gi|147779768|emb|CAN71727.1| hypothetical protein VITISV_003014 [Vitis vinifera]
Length = 1167
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 166/388 (42%), Gaps = 104/388 (26%)
Query: 114 LELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 173
+EL+ LIS+ +CR N +I G +GYA K+ + +
Sbjct: 714 MELDLVTLISIIPICRVXEN------LIQGMTLHGYAI---------------KTGFACD 752
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLL- 230
V + LI MY CG ++ F+ + +V +A+I GY H + SF ++
Sbjct: 753 VSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIX 812
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQ------- 282
++ Y T L+ L QGK +H F ++ G+ +E+ ++ SL ++ R++
Sbjct: 813 EGQKPNYVTLLNLLPSCXTLLQGKSIHAFAVRTGVIVETPIITSLISMYARFENINSFIF 872
Query: 283 -------PNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY------------ 314
++ LWNA++S Y + A+E+V F P ++ +
Sbjct: 873 LFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSS 932
Query: 315 ---------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
Y+ + + +++++ LID++A+CG++ +A F+ KD V S M G
Sbjct: 933 LNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTMING 992
Query: 366 YGLHGLGE-----------------------------------EGWVLFHHIRKHGIEPR 390
YGLHG E +GW++F+ + + G+ R
Sbjct: 993 YGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVEEGVPRR 1052
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMP 418
+HYA +VDLL R G N A+ F+ +P
Sbjct: 1053 MEHYACMVDLLGRTGQLNEAYDFVEKLP 1080
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 59/315 (18%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
++ + N+++ T L+D YAK G + A + D+ D+V +A+I GY L+ + F
Sbjct: 373 RTAFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDK-EVF 431
Query: 227 DGL-------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLT 276
+ L L + + + + ++ L+ GK +HGF++K G E + LIS+
Sbjct: 432 EVLRQILEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMY 491
Query: 277 A------VCR------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------ 312
A + R + NV +WN+MIS YA+N + EA K+F + +
Sbjct: 492 AGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFV 551
Query: 313 ----------DYYIGKS------EYR--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
+++ GKS +YR + + V T L+ MYAK G + A F + + +
Sbjct: 552 SIIPCCENSANFWXGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDXNSAXFIFYQ-MPR 610
Query: 355 DVVMRSAMTVGYGLHGLGEE-GWV--LFHHIRKHGIE--PRHQHYARVVDLLARAGYSNH 409
R +M GYG+ +G WV L H K G E ++ + G +
Sbjct: 611 KTSYRDSMISGYGIMSMGRPFFWVRLLMHLAIKTGKEFDSXLNISNALLAFYSDCGKLSS 670
Query: 410 AFKFIMNMPIELRLS 424
+FK MP+ +S
Sbjct: 671 SFKLFQKMPLRNAIS 685
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 130/561 (23%), Positives = 211/561 (37%), Gaps = 141/561 (25%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF---LVC-------YLFDGLFDRTIVFLDLY 61
T P V+KAC AL ++ + VH + F LV Y G + + LD
Sbjct: 347 TFPFVIKACSALGAVWIAEGVHCIVLRTAFEENLVIQTALVDFYAKTGRMVKARLVLDKI 406
Query: 62 HLWSRTEWSAFGS------FD-------------GLLSNEENEYGTALDCSCDLEFLEQG 102
W+A S FD GL N + + + ++ L+ G
Sbjct: 407 SQPDLVTWNALISGYSLNGFDKEVFEVLRQILEMGLKPNVST-FASIIPLCTRMKCLDIG 465
Query: 103 KIVHGFMIKLGL---ELESDLLISLTA------VCR------YQPNVTLRNAMISGYAKN 147
K +HGF++K G E + LIS+ A + R + NV + N+MIS YA+N
Sbjct: 466 KSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQN 525
Query: 148 GYAEEAVKLFPKWM----------------------DYYIGKS------EYR--NNVIVN 177
+ EA K+F + + +++ GKS +YR + + V
Sbjct: 526 QKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWXGKSLHAHVMKYRLDSQLSVA 585
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237
T L+ MYAK G + A F + + + R +MI GYG+ + LL + +
Sbjct: 586 TALLSMYAKLGDXNSAXFIFYQ-MPRKTSYRDSMISGYGIMSMGRPFFWVRLLMHLAIKT 644
Query: 238 GTALDCSCDLE------FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
G D ++ + + GK+ F + + L N WN +
Sbjct: 645 GKEFDSXLNISNALLAFYSDCGKLSSSFKLFQKMPLR---------------NAISWNTL 689
Query: 292 ISGYAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEY 321
ISG NG ++AV L K Y K+ +
Sbjct: 690 ISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVXENLIQGMTLHGYAIKTGF 749
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+V + LI MY CG ++ F+ + +V +A+ GY H L E F
Sbjct: 750 ACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQ 809
Query: 382 IRKHGIEPRHQHYARVVDLLARA-----GYSNHAFKFIMNMPIELRLSVRRALLSAWKIP 436
+ G +P +Y +++LL G S HAF + +E + +L+S +
Sbjct: 810 MIXEGQKP---NYVTLLNLLPSCXTLLQGKSIHAFAVRTGVIVE--TPIITSLISMYA-- 862
Query: 437 MQQWENMLQTIRGIDEGEKTD 457
++EN+ I + G K D
Sbjct: 863 --RFENINSFIFLFEMGGKED 881
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 113/274 (41%), Gaps = 72/274 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFDGLFDRTIVFLDLYHLWSRTEWS 70
++ C +L+ G +HG GF LV L F+ + + L+ W
Sbjct: 724 IIPICRVXENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKF-LFEVMPWR 782
Query: 71 AFGSFDGLLS---------------------NEENEYGTALDCSCDLEFLEQGKIVHGFM 109
+ S++ L++ ++ Y T L+ L QGK +H F
Sbjct: 783 SIVSWNALITGYRFHYLQNEVMASFCQMIXEGQKPNYVTLLNLLPSCXTLLQGKSIHAFA 842
Query: 110 IKLGLELESDLLISLTAV-CRYQ--------------PNVTLRNAMISGYAKNGYAEEAV 154
++ G+ +E+ ++ SL ++ R++ ++ L NA++S Y + A+E+V
Sbjct: 843 VRTGVIVETPIITSLISMYARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESV 902
Query: 155 KLF---------PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMY 184
F P ++ + Y+ + + +++++ LID++
Sbjct: 903 TFFCELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNALIDLF 962
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
A+CG++ +A F+ KD V S MI GYGLH
Sbjct: 963 ARCGNISIAKKIFEGLSSKDAVSWSTMINGYGLH 996
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 128/519 (24%), Positives = 211/519 (40%), Gaps = 126/519 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDR--TIVF 57
M+ + + T P V+KAC L +L++G +VHG++ +GF L Y+ + L D I F
Sbjct: 115 MECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGF 174
Query: 58 LDLYH-LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
++L ++ S++ ++S + + C E M++LG +
Sbjct: 175 IELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKE-----------MLRLGNKA 223
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
+ +IS C + LR+ M + + +SE +++V
Sbjct: 224 DRFGMISALGACSIEH--CLRSGM-------------------EIHCQVIRSELELDIMV 262
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE 236
T LIDMY KCG VD A F+R K++V +AMI G D ++ +
Sbjct: 263 QTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG--------MQEDDKVIPDVITM 314
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVC------------RY 281
CS LE GK +HGF I+ L + L+ + C
Sbjct: 315 INLLPSCSQSGALLE-GKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMN 373
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KW 311
+ N+ WN M++ Y +N +EA+K+F K
Sbjct: 374 EKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQ 433
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ YI K +N ++ ++ MYAKCG + A FFD + KDVV + M + Y +HG
Sbjct: 434 IHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGF 493
Query: 372 G-----------------------------------EEGWVLFHHIR-KHGIEPRHQHYA 395
G +EGW F+ ++ ++GI+P +HY
Sbjct: 494 GRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYG 553
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
++DLL R G + A FI MP+ + +LL+A +
Sbjct: 554 CMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASR 592
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 155/365 (42%), Gaps = 89/365 (24%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKC--GSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
K + ++ ++ + + + LI+ A G V A F T ++ M + +I GY
Sbjct: 24 KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYS 83
Query: 217 LHE--WSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
+ + +A + + +S +G L C L L +G+ +H ++K+GL+ E+
Sbjct: 84 ISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETP 143
Query: 271 L---LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------ 309
L LI L A C +P+ W+ M+SGYA+NG A EA+KLF
Sbjct: 144 LVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAEN 203
Query: 310 ------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
KW+ Y+ K + +V++ T L+ MY+KCGS+D A
Sbjct: 204 VSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNAL 263
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--------------------- 384
F ++DV S M GY +HG GE+ LF +++
Sbjct: 264 KVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSG 323
Query: 385 ---------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
+ I P+ +HY +VDL RAG HA KFI MPIE + + R L
Sbjct: 324 LVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTL 383
Query: 430 LSAWK 434
L A K
Sbjct: 384 LGACK 388
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 131/323 (40%), Gaps = 76/323 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY----- 130
+S +G L C L L +G+ +H ++K+GL+ E+ L LI L A C
Sbjct: 103 ISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYAC 162
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------- 158
+P+ + M+SGYA+NG A EA+KLF
Sbjct: 163 VMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLG 222
Query: 159 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
KW+ Y+ K + +V++ T L+ MY+KCGS+D A F ++DV S MI
Sbjct: 223 ALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIA 282
Query: 214 GYGLHEW--SAFGSFDGLLSNEE----NEYGTALDCSCDLEFLEQGKIV----------- 256
GY +H A FD + ++ + + L +E+G +
Sbjct: 283 GYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKIT 342
Query: 257 -----HGFMIKL----GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307
+G M+ L G+ + I + +PNV LW ++ +GY + +
Sbjct: 343 PQIKHYGCMVDLFCRAGMVGHAHKFIQTMPI---EPNVVLWRTLLGACKTHGYKDLGEHI 399
Query: 308 FPKWMDYYIGKSEYRNNVIVNTV 330
K + + S N V+V+ V
Sbjct: 400 SRKILK--LDPSSPENYVLVSNV 420
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 132/586 (22%), Positives = 223/586 (38%), Gaps = 170/586 (29%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLYHLWSR---- 66
+VLKAC AL MG +VHG + GF + G++ + D ++S
Sbjct: 186 VVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEK 245
Query: 67 --TEWSAFGSFDGLLSNEENEYGTAL---------------------DCSCDLEFLEQGK 103
WSA G + N+ N G L C+ L L GK
Sbjct: 246 NWVSWSAM--IAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAA-LSALRLGK 302
Query: 104 IVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNVTLR--NAMISGYAK 146
+H +K SD+++ + Y P +L+ NA+I GYA+
Sbjct: 303 ELHSHALKSAFG--SDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYAR 360
Query: 147 NGYAEEAVKLFPKWMDYYIG------------------------------KSEYRNNVIV 176
+ +A+K F + +G KS +N+ V
Sbjct: 361 SDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICV 420
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG--YGLHEWSAFGSFDGLLSN-- 232
++DMY KC ++ A FD +D V +A+I +E F ++ +
Sbjct: 421 ANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRM 480
Query: 233 --EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC-------- 279
++ YG+ L + L G +H +IK G+ +S L+ + C
Sbjct: 481 EPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADK 540
Query: 280 ----RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------ 317
Q + WNA+ISG++ +E+A K F + ++ +
Sbjct: 541 IHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLAT 600
Query: 318 ------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
K E +++V + + L+DMY+KCG++ + + F++ ++D V +AM G
Sbjct: 601 VGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCG 660
Query: 366 YGLHGLGEEGWVLFHHIR------------------------------------KHGIEP 389
Y HGLGEE LF ++ ++G++P
Sbjct: 661 YAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDP 720
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +HY+ +VD+L R+G + A + MP E + R LLS KI
Sbjct: 721 QSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKI 766
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 121/312 (38%), Gaps = 62/312 (19%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
C ++P + N ++ Y K Y + A K+F K Y +V+ +I YA C
Sbjct: 78 CGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM---------YLRDVVSYNSIISGYASC 128
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN-------EENEYGTA 240
G +D+A FF ++DVV +++I G+ L S D L +
Sbjct: 129 GEMDIARKFFYEMPERDVVSWNSVISGF-LQNGECRKSIDVFLEMGRCGVGFDRASLAVV 187
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNV 285
L LE + G VHG ++K G + + L+ + A C+ + N
Sbjct: 188 LKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNW 247
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG---------------------------- 317
W+AMI+G +N E ++LF + +G
Sbjct: 248 VSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSH 307
Query: 318 --KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
KS + +++IV T +DMYAKCG + A + +A+ VGY G +
Sbjct: 308 ALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQA 367
Query: 376 WVLFHHIRKHGI 387
F + K G+
Sbjct: 368 LKSFQLLLKTGL 379
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 54/224 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY------ 61
P+ T VLKAC +L G +H +I G FD +V D+Y
Sbjct: 482 PDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMG----FDSFVGAALV--DMYCKCGMI 535
Query: 62 ----HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGF---MIKLGL 114
+ RTE S++ ++S L+Q + H F M+++G+
Sbjct: 536 EKADKIHDRTEQKTMVSWNAIISG--------------FSLLQQSEDAHKFFSRMLEMGV 581
Query: 115 ELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174
++ ++ C N G K +A+ I K E +++V
Sbjct: 582 NPDNFTYAAVLDTCA--------NLATVGLGKQIHAQ-------------IIKQELQSDV 620
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ + L+DMY+KCG++ + + F++ ++D V +AM+ GY H
Sbjct: 621 YICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHH 664
>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
Length = 683
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 164/416 (39%), Gaps = 119/416 (28%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPK------------------------------WMD 162
NV +M+SG +NG+A + + LF K WM
Sbjct: 197 NVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMH 256
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----L 217
+ K +N ++ L+DMY KCG ++ A FD D+V+ + MIVGY L
Sbjct: 257 GSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPL 316
Query: 218 HEWSAF--GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLL 272
F F ++ N T L S L L G+ +HG +KLGL + + L
Sbjct: 317 DALRLFLDKKFANIVPNSVT-IATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNAL 375
Query: 273 ISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-------- 312
+ + A C+ +V WN+M+SGYA+N +A+ LF +
Sbjct: 376 VDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDA 435
Query: 313 --------------DYYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
D IGKS + +N+ V+T L+++Y KCG + A FD
Sbjct: 436 ISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDE 495
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------- 391
D++ V AM GYG+ G LF + K G+ P
Sbjct: 496 MNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAA 555
Query: 392 -----------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
+HYA +VD+LARAG A +FI NMP++ SV A L
Sbjct: 556 KRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFL 611
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 131/315 (41%), Gaps = 74/315 (23%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL----- 230
V L+DMYAK G ++ A F+R ++VV ++M+ G + ++A DGLL
Sbjct: 169 VMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAA----DGLLLFNKM 224
Query: 231 -----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL---------- 275
E T + L L QG+ +HG +IK GL S + +L
Sbjct: 225 RQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGEL 284
Query: 276 -TAVCRYQP----NVTLWNAMISGYAKNGYAEEAVKLF---------------------- 308
A C + ++ LW MI GY +NG +A++LF
Sbjct: 285 EDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSAS 344
Query: 309 PKWMDYYIGKS-----------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+ D +G+S EY V+VN L+DMYAKC +V A F +KDVV
Sbjct: 345 AQLRDLSLGRSIHGIAVKLGLVEY--TVVVNA-LVDMYAKCQAVSEANRIFGSISNKDVV 401
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-----HQHYARVV--DLLARAGYSNHA 410
++M GY + + + +LF + G P H A V DLL + +A
Sbjct: 402 AWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYA 461
Query: 411 FK--FIMNMPIELRL 423
K F+ N+ + L
Sbjct: 462 VKHAFLSNIYVSTAL 476
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 120/296 (40%), Gaps = 76/296 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD------GLFDRT 54
V P+ T V+ AC AL L G +HG + G F+ L D L D
Sbjct: 229 VPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQ 288
Query: 55 IVFLDLYH----LWSR--TEWSAFGS------------FDGLLSNEENEYGTALDCSCDL 96
VF +L + LW+ ++ G+ F ++ N T L S L
Sbjct: 289 CVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVT-IATVLSASAQL 347
Query: 97 EFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCR------------YQPNVTLRNAMI 141
L G+ +HG +KLGL + + L+ + A C+ +V N+M+
Sbjct: 348 RDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSML 407
Query: 142 SGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS--------EYR 171
SGYA+N +A+ LF + D IGKS +
Sbjct: 408 SGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFL 467
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+N+ V+T L+++Y KCG + A FD D++ V AMI GYG+ SA GS D
Sbjct: 468 SNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSA-GSID 522
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 144/599 (24%), Positives = 232/599 (38%), Gaps = 174/599 (29%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYL---------------- 46
A +P+ T P V+K+C AL ++ +G VH ++G Y+
Sbjct: 135 AAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGN 194
Query: 47 ----FDGLFDRTIVFLDLYHLWSRTEWSAF--GSFDGLLSNEENEYGTALD--------- 91
FDG+ +R V LW+ G DG + N + +
Sbjct: 195 ARDAFDGIPERDCV------LWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACF 248
Query: 92 ---CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPN 133
C+ D + L G +H +K GLE E ++ L+++ A C+ Q +
Sbjct: 249 LSVCATDADLLS-GAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDD 307
Query: 134 VTLRNAMISGYAKNGYAEEA-------------------VKLFPKWMDY----------- 163
+ N MISG +NG EA V L P D
Sbjct: 308 LVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHG 367
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-- 221
YI ++ +V + + L+D+Y KC V +A +D DVV+ S MI GY L+ S
Sbjct: 368 YIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEE 427
Query: 222 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
A F LL + L + L G+ +HG++++ E + L+
Sbjct: 428 ALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMD 487
Query: 275 LTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------KWMDYY 315
+ A C Q + WN+MIS +++NG +EA+ LF K+ +
Sbjct: 488 MYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNIT 547
Query: 316 IG-----------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
I K + ++ + LIDMYAKCG+++LA F+
Sbjct: 548 ISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMP 607
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-------------------------- 386
DK+ V +++ YG HGL +E L H +++ G
Sbjct: 608 DKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQ 667
Query: 387 ----------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I PR +H+A +VDL +R+G + A +FI +MP + + ALL A ++
Sbjct: 668 LFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRV 726
>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
Length = 848
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 118/498 (23%), Positives = 196/498 (39%), Gaps = 142/498 (28%)
Query: 78 LLSNEEN------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC 128
LL+ EN + + L C EF+ G VH ++KLG E + + L+++ + C
Sbjct: 245 LLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKC 304
Query: 129 RYQPN------------VTLRNAMISGYAKNGYAEEAVKL-------------------- 156
+ + L NAMIS Y NG + + +K+
Sbjct: 305 KLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVL 364
Query: 157 ----------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
F + + + K ++NV + + L+ MY+KCG+ D A F+ +DVV
Sbjct: 365 SSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVV 424
Query: 207 MRSAMIVGYG-----LHEWSAFGSFDGLLSNEENEYGTALDCSCD-LEFLEQGKIVHGFM 260
+MI G+ + + S +++ ++ +C L+ + G +HG
Sbjct: 425 AWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLA 484
Query: 261 IKLGLELESDLLISLTAVCRYQP-----------------NVTLWNAMISGYAKNGYAEE 303
IK GLE D+ ++ + V Y N+ WN++IS Y +NG +
Sbjct: 485 IKSGLE--QDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDL 542
Query: 304 AVKLFPKWMDY------------------------------YIGKSEYRNNVIVNTVLID 333
++ LF + Y Y+ + +++ + LID
Sbjct: 543 SISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALID 602
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG----------------------- 370
MY KCG + A F L ++V + M G G HG
Sbjct: 603 MYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDIT 662
Query: 371 ------------LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
EEG LF + +HGIEPR +HY +VDLL RAG + A+ F+ N+
Sbjct: 663 FISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNL 722
Query: 418 PIELRLSVRRALLSAWKI 435
PIE S+ +LL + ++
Sbjct: 723 PIEPDRSIWLSLLCSCRV 740
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 132/347 (38%), Gaps = 60/347 (17%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KDVVMRSAMIVGYGL-- 217
I K + ++ + T LI+ Y KCGS A FD+ + +DV ++++ GY
Sbjct: 76 ITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFG 135
Query: 218 HEWSAFGSFD--GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDL 271
H+ F L + Y + L K +HG+ ++ LES L
Sbjct: 136 HKKEGIAQFCRMQLFGVRPDAYSLCILLGASDGHLGYAKQIHGYSVRKVFYGDPFLESGL 195
Query: 272 LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAE-----------EAVKL- 307
+ + R + NV WN MI G+ +NG E E VKL
Sbjct: 196 IYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLV 255
Query: 308 ------------------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
F + + K + N+ V T L+ MY+KC V+ A FD
Sbjct: 256 SASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFD 315
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD---LLARAGY 406
+ K + +AM Y +G +G ++ ++ I P V+ L+ +
Sbjct: 316 QVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDF 375
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI--PMQQWENMLQTIRGID 451
++ PI+ ++++ ALL+ + ++ TI+G D
Sbjct: 376 GRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRD 422
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 125/501 (24%), Positives = 194/501 (38%), Gaps = 136/501 (27%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 130
L + Y A+ + G ++HG I G + S+LL+ V Y
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCD--SELLLGSNIVKMYFKFWRVED 172
Query: 131 ---------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK-------------- 167
+ + L N MISGY KN E++++F ++ +
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232
Query: 168 --SEYRNNVIVNTV---------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
E R + ++++ I +Y+KCG + +A F D+V +A
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNA 292
Query: 211 MIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
MI GY G E S + +LS + + T + L +HG+ +K
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLS 352
Query: 268 ESDLLISLTAVCRY-------------QPNVTL--WNAMISGYAKNGYAEEAVKLFP--- 309
+ + +LT V P +L WNAMISGY +NG E+A+ LF
Sbjct: 353 HTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412
Query: 310 ---------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
KW+ + +++ +++ V+T LI MYAKCGS+
Sbjct: 413 NSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIA 472
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH--------------------- 381
A FD K+ V + M GYGLHG G+E +F
Sbjct: 473 EARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACS 532
Query: 382 ---------------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
I ++G EP +HYA VVD+L RAG+ A +FI MPI+ SV
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVW 592
Query: 427 RALLSAWKIPMQQWENMLQTI 447
LL A +I + N+ +T+
Sbjct: 593 ETLLGACRI--HKDTNLARTV 611
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 121/444 (27%)
Query: 112 LGLELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWM-------- 161
+G+ ++ L+ V Y P N + M+SGYA G EEA+K+F ++
Sbjct: 160 VGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSD 219
Query: 162 -DY-------------YIG----------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
DY Y+G K+ V ++ L+ MY+KC S++ A F
Sbjct: 220 SDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMF 279
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN--EENEYGTA--LDCSCDLEFLE 251
D + D++ + SAM+ GY + S A F + S + +EY L+ D+ +LE
Sbjct: 280 DSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLE 339
Query: 252 QGKIVHGFMIKLGLE---LESDLLISLTAV------------CRYQPNVTLWNAMISGYA 296
+GK +H F++KLG E + L+ + A C + +V LW ++ISGY
Sbjct: 340 EGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYV 399
Query: 297 KNGYAEEAVKLFPKWMDYYI----------------------GKSEYRNN--------VI 326
+N EEA+ L+ + I GK + + V
Sbjct: 400 QNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 459
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE------------ 374
+ + L MY+KCGS++ + F RT +KDVV +AM G +G G+E
Sbjct: 460 IGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEG 519
Query: 375 -----------------------GWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHA 410
GW F+ + G++P+ HYA +VDLL+RAG A
Sbjct: 520 MEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEA 579
Query: 411 FKFIMNMPIELRLSVRRALLSAWK 434
+FI + I+ L + R LLSA K
Sbjct: 580 KEFIESANIDHGLCLWRILLSACK 603
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 129/314 (41%), Gaps = 59/314 (18%)
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-----EWSAFGSFDGLLSNE 233
VL++ YAKCG + A F+ + KDVV +++I GY + ++ F + + +
Sbjct: 54 VLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQD 113
Query: 234 --ENEYGTA--LDCSCDLEFLEQGKIVHGFMIKL-------------GLELESDLLISLT 276
N Y A L+ G+ H ++K+ G+ ++ L+
Sbjct: 114 ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGL 173
Query: 277 AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWM---------DY----------- 314
V Y P N W+ M+SGYA G EEA+K+F ++ DY
Sbjct: 174 KVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAA 233
Query: 315 --YIG----------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y+G K+ V ++ L+ MY+KC S++ A FD + D++ + SAM
Sbjct: 234 TIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAM 293
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY---SNHAFKFIMNMPI 419
GY +G E LF + GI+P V++ + Y F++ +
Sbjct: 294 VTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGF 353
Query: 420 ELRLSVRRALLSAW 433
E L AL+ +
Sbjct: 354 ERHLFATTALVDMY 367
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 152/401 (37%), Gaps = 101/401 (25%)
Query: 99 LEQGKIVHGFMIKLGLEL---ESDLLISLTAVCRYQP------------NVTLRNAMISG 143
L G+ VHG +I+ G +++L++ A C +V N++I+G
Sbjct: 30 LVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITG 89
Query: 144 YAKNGYAEEA---VKLFPKWMDYYIGKSEYR----------------------------- 171
Y++NG + ++LF + I + Y
Sbjct: 90 YSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSS 149
Query: 172 -NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDG 228
++ V+T L+ MY K G V+ F +++ S M+ GY A F+
Sbjct: 150 FGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNL 209
Query: 229 LLSNEENE------YGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVC 279
L +E + L ++ G+ +H IK LG S+ L+++ + C
Sbjct: 210 FLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKC 269
Query: 280 RY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------ 321
N W+AM++GY++NG + EAVKLF + I SEY
Sbjct: 270 ESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVL 329
Query: 322 ------------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
++ T L+DMYAK G + A FD ++DV
Sbjct: 330 NACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVA 389
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+ +++ GY + EE +L+ ++ GI P A V+
Sbjct: 390 LWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVL 430
>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 745
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 131/496 (26%), Positives = 199/496 (40%), Gaps = 107/496 (21%)
Query: 14 PLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLYHLWSRTEW 69
P +LKAC S +G +HG GF VC ++++ +
Sbjct: 92 PSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLV----------- 140
Query: 70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 129
SA FD + + + T L C + + + M +G++L LISL AV
Sbjct: 141 SARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFG 200
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ M SG A +GY V + + V + T LIDMY K G
Sbjct: 201 NLLD------MKSGRAVHGYIVRNV-------------GDEKMEVSMTTALIDMYCKGGC 241
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGY----GLHEWSAFGSFDGLLSNE--ENEYGTALDC 243
+ A FDR + VV + MI G L E + +F+ +L + NE T L
Sbjct: 242 LASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAK--NFNRMLEEKLFPNEI-TLLSL 298
Query: 244 SCDLEF---LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNV 285
+ F L+ GK H ++++ G + L LI + C + +V
Sbjct: 299 ITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDV 358
Query: 286 TLWNAMISGYAKNGYAEEAVKLF------------------------------PKWMDYY 315
+W+ +IS YA ++ LF KW Y
Sbjct: 359 KIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAY 418
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
I + +VI+ T LI+MYAKCG V +A F+ + +D+ M + M G+ +HG G+E
Sbjct: 419 INRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEA 478
Query: 376 WVLFHHIRKHGIEPRH----------------QHYARVVDLLARAGYSNHAFKFIMNMPI 419
LF + HG+EP +HY +VDLL RAG+ + A I NMP+
Sbjct: 479 LELFSEMESHGVEPNDITFVSIFHACSHSGLMEHYGCLVDLLGRAGHLDEAHNIIENMPM 538
Query: 420 ELRLSVRRALLSAWKI 435
+ ALL+A K+
Sbjct: 539 RPNTIIWGALLAACKL 554
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 124/476 (26%), Positives = 194/476 (40%), Gaps = 148/476 (31%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMD---------------------------YYI 165
N+ + MIS +A++G AV+LF + + YI
Sbjct: 415 NLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYI 474
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AF 223
K ++ V + L MY+KCGS++ + F++ DKD V ++MI G+ H+ + A
Sbjct: 475 LKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAV 534
Query: 224 GSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIK--LGLE-LESDLLISLT 276
F +L E + AL L LE+GK VHG+ ++ +G E L L+++
Sbjct: 535 QLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMY 594
Query: 277 AVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------WMDYY--- 315
+ C Q + ++++SGYA+NGY E+A+ LF + W+D +
Sbjct: 595 SKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVS 654
Query: 316 --IGKSEYRNN-------------------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
IG N+ V V + L+ MY+KCGS+D F++
Sbjct: 655 SVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKP 714
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------------ 384
D++ +AM V Y HG G E ++ +RK
Sbjct: 715 DLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHL 774
Query: 385 ------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL----------------- 421
+GIEP + HYA +VDLL R+G A +FI NMPIE
Sbjct: 775 NSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGD 834
Query: 422 ----RLSVRRAL------------LSAWKIPMQQWENMLQTIRGIDEGEKTDKRPG 461
RL+ +R + LS M WE++++ IR + EG K PG
Sbjct: 835 IELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMK-IRSLMEGTGVKKEPG 889
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 107/450 (23%), Positives = 179/450 (39%), Gaps = 101/450 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHG-----QIFSLGFLVCYLFDGLFDRTI 55
M+ + PN T VL AC AL S L G V+ FS G++ + D LF +
Sbjct: 138 MRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMID-LFAKLC 196
Query: 56 VFLDLYHLWSRTE------WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 109
F D ++ W+A S G + N EN ALD C +
Sbjct: 197 SFEDALRVFQDVLCENVVCWNAIIS--GAVKNREN--WVALDLFCQM------------- 239
Query: 110 IKLGLELESDLLISLTAVCRY-QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 168
CR+ PN +++++ A A E ++ F + + ++ K
Sbjct: 240 -----------------CCRFFMPNSFTFSSILTACA----ALEELE-FGRGVQGWVIKC 277
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF 226
+V V T +ID+YAKC +D A F R ++VV + +I G+ + SAF F
Sbjct: 278 GAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFF 337
Query: 227 DGL--LSNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---- 278
+ + + N Y + L + +++ +H ++ K G L+S++ +L +
Sbjct: 338 KEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKI 397
Query: 279 ------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------------- 313
N+ +W MIS +A++G AV+LF + +
Sbjct: 398 GVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSV 457
Query: 314 --------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
YI K ++ V + L MY+KCGS++ + F++ DKD V
Sbjct: 458 LSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSW 517
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
++M G+ H E+ LF + I P
Sbjct: 518 ASMITGFSEHDHAEQAVQLFREMLLEEIRP 547
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 45/175 (25%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIK--LGLE-LESDLLISLTAVCRY------------QPN 133
AL L LE+GK VHG+ ++ +G E L L+++ + C Q +
Sbjct: 555 ALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKD 614
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPK------WMDYY-----IGKSEYRNN--------- 173
++++SGYA+NGY E+A+ LF + W+D + IG N+
Sbjct: 615 QFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHA 674
Query: 174 ----------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V V + L+ MY+KCGS+D F++ D++ +AMIV Y H
Sbjct: 675 CVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQH 729
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 105/276 (38%), Gaps = 53/276 (19%)
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH---- 218
+++ + ++N + L+ Y K S+ A FD+T +V+ + +I G +
Sbjct: 70 HFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFE 129
Query: 219 -EWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL----ELESDL 271
W F F G N+ YG+ L L G++V+ +K G + + +
Sbjct: 130 DSWRNFCKMRFSGFDPNQFT-YGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGM 188
Query: 272 LISLTAVCRYQ-----------PNVTLWNAMISGYAKNGYAEEAVKLF---------PKW 311
+ +C ++ NV WNA+ISG KN A+ LF P
Sbjct: 189 IDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNS 248
Query: 312 MDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+ ++ K +V V T +ID+YAKC +D A F R
Sbjct: 249 FTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLR 308
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
++VV + + G+ + F +RK G
Sbjct: 309 MPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVG 344
>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
Length = 825
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 172/425 (40%), Gaps = 102/425 (24%)
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAV-----------------CRYQPNVTLRNAMIS 142
+ +++G ++KLG + D + +A+ C + N + N MI
Sbjct: 235 DNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIG 294
Query: 143 GYAKNGYAEEAVKLFPK-------------------------WMDY------YIGKSEYR 171
GY +N EA+ LF + W+D YI KS
Sbjct: 295 GYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTI 354
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD- 227
V++ +I MY++CGS+ + F L++DVV + M+ + GL + F+
Sbjct: 355 LQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEM 414
Query: 228 ---GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE------------SDLL 272
G + + L + +L E GK H ++I+ G++ E S L+
Sbjct: 415 QKQGFMVDSVT-LTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLI 473
Query: 273 ISLTAV----CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------------ 316
+ + Y + WNAMI+GY +NG +EE +F K ++ +
Sbjct: 474 TTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILP 533
Query: 317 ----------GKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
GK + NV V T L+DMY+K G++ A F TL+K+ V
Sbjct: 534 ACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVT 593
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+ M + YG HG+GE LFH + GI+P + ++ + AG + + +M
Sbjct: 594 YTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSME 653
Query: 419 IELRL 423
E ++
Sbjct: 654 REYKI 658
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 126/325 (38%), Gaps = 68/325 (20%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC- 187
R P+ + S K ++KL K + ++ +S + ++ IV L++MY+ C
Sbjct: 95 RASPSPKFDSYTFSSTLKACAQARSLKL-GKALHCHVLRSHFGSSRIVYNSLLNMYSTCL 153
Query: 188 ------------GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLS-- 231
+ DL FD ++VV + MI Y E AF F ++
Sbjct: 154 TEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG 213
Query: 232 --NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV----------- 278
+ + + +++G ++KLG + D + +A+
Sbjct: 214 IRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDF 273
Query: 279 ------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK---------------------- 310
C + N +WN MI GY +N EA+ LF +
Sbjct: 274 AREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAIS 333
Query: 311 ---WMDY------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
W+D YI KS V++ +I MY++CGS+ + F L++DVV +
Sbjct: 334 QLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNT 393
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHG 386
M + +GL +EG +L ++K G
Sbjct: 394 MVSAFVQNGLDDEGLMLVFEMQKQG 418
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 143/595 (24%), Positives = 218/595 (36%), Gaps = 180/595 (30%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIVF 57
PN L+AC + G +VHG LG + Y G D +
Sbjct: 135 PNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSV 194
Query: 58 LDLYHLWSRTEWSA-----------------FG--SFDGLLSNEENEYGTALDCSCDLEF 98
D + W+A FG DG+ + A CS L F
Sbjct: 195 FDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACS-GLGF 253
Query: 99 LEQGKIVHGFMIKLGLELESDL---LISLTAVC-------RYQPNVTLRN-----AMISG 143
+E G+ +HG+ + E ++ + LI L C R ++ RN MI+G
Sbjct: 254 VEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAG 313
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
Y +N EA+ +F + + ++ K++ ++
Sbjct: 314 YMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESD 373
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL---- 229
V LIDMYAKC + A F+ + D + +AMI GY + G G
Sbjct: 374 EYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY-----ARLGDLTGAVEIF 428
Query: 230 -------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-------------- 268
L + + L S LE K +HG ++K G L+
Sbjct: 429 GKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKF 488
Query: 269 -----SDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR- 322
+ L+ SL ++ +WNAMI G A+N EEAVKLF + + +E+
Sbjct: 489 SLVDDAKLVFSLM----QNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTF 544
Query: 323 -----------------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
++ ++ LIDMYAKCG ++ + F+ TL
Sbjct: 545 VALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLG 604
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLF--------------------------------HH 381
KDV+ ++M Y HG EE +F HH
Sbjct: 605 KDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHH 664
Query: 382 IR----KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
K+ +EP +HYA VV+L R+G + A +FI MPIE ++ R+LLSA
Sbjct: 665 FNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSA 719
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 144/347 (41%), Gaps = 87/347 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNE 233
V T LI +++KC VD A + F D+V +A+I G+ + + A F LL +
Sbjct: 241 VLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG 300
Query: 234 ENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR--------- 280
+ + + S L + GF +K G L+ + +LT +
Sbjct: 301 QRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLAR 360
Query: 281 ------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD--------------------- 313
+ V WNAMISGYA++G E A+ LF + M
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420
Query: 314 -YYIGKSEYR--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
GKS ++ N+ V+T LIDMYAKCG++ A FD T +K+ V + M
Sbjct: 421 ALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIF 480
Query: 365 GYGLHGLGEEGWVLFHH------------------------------------IRKHGIE 388
GYGLHG G+E LF+ + K+ IE
Sbjct: 481 GYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIE 540
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P +HYA +VD+L RAG A +FI MP+E +V LL A I
Sbjct: 541 PLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMI 587
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 125/318 (39%), Gaps = 54/318 (16%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
+ +N+ V + L+D+Y K V A FD+ D+D V+ + MI G + + F
Sbjct: 134 FDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFK 193
Query: 228 GLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR 280
+++ + T L +++ ++ G + +KLG + +L L +V C
Sbjct: 194 DMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCE 253
Query: 281 ------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM---------------- 312
+P++ +NA+ISG++ NG E AVK F + +
Sbjct: 254 DVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIP 313
Query: 313 --------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+ KS V+T L +Y++ +DLA FD + +K V
Sbjct: 314 VSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAA 373
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG---YSNHAFKFIM 415
+AM GY GL E LF + P ++ A+ G + + I
Sbjct: 374 WNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIK 433
Query: 416 NMPIELRLSVRRALLSAW 433
+ +E + V AL+ +
Sbjct: 434 SKNLEQNIYVSTALIDMY 451
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 45/161 (27%)
Query: 105 VHGFMIKLGLELESDLLISLTAVCR---------------YQPNVTLRNAMISGYAKNGY 149
+ GF +K G L+ + +LT + + V NAMISGYA++G
Sbjct: 327 IQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGL 386
Query: 150 AEEAVKLFPKWMD----------------------YYIGKSEYR--------NNVIVNTV 179
E A+ LF + M GKS ++ N+ V+T
Sbjct: 387 TEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTA 446
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
LIDMYAKCG++ A FD T +K+ V + MI GYGLH +
Sbjct: 447 LIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGY 487
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/483 (25%), Positives = 203/483 (42%), Gaps = 136/483 (28%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------- 130
G+ L L ++ G+++HGF++K G E + L+ + A C+
Sbjct: 166 GSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEF 225
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------------K 159
+ N L AM++GYA+NG +AV+ F +
Sbjct: 226 DRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGE 285
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH- 218
+ +I KS + +NV V + L+DMYAKCG + A + D DVV ++++VG+ H
Sbjct: 286 QVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHG 345
Query: 219 -EWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESD 270
E A F + + ++ + + L+C C + + K VHG +IK G E L S+
Sbjct: 346 LEEEALRLFKNMHGRNMKIDDYTFPSVLNC-CVVGSINP-KSVHGLIIKTGFENYKLVSN 403
Query: 271 LLISLTAV-----CRY-------QPNVTLWNAMISGYAKNGYAEEAVKLF---------- 308
L+ + A C Y + +V W ++++GYA+N EE++K+F
Sbjct: 404 ALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNP 463
Query: 309 --------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
K + KS R + V L+ MYAKCG +D A F
Sbjct: 464 DQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIF 523
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLG-----------------------------------E 373
KDV+ +A+ VGY +G G +
Sbjct: 524 VSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVD 583
Query: 374 EGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
EG F + K +GI+P +HYA ++DL R+G + A + + M ++ +V ++LLSA
Sbjct: 584 EGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSA 643
Query: 433 WKI 435
++
Sbjct: 644 CRV 646
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 137/318 (43%), Gaps = 65/318 (20%)
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
I T Y+ ++ N +++ +K+G +A KLF K K EY N ++++
Sbjct: 54 IHTTTAASYE-SIYQTNQLLNQLSKSGQVNDARKLFDKMPQ----KDEYSWNTMISS--- 105
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLL----SNEEN 235
Y G + A FD K + S++I GY + AF F + +
Sbjct: 106 --YVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQF 163
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY----------- 281
G+ L L ++ G+++HGF++K G E + L+ + A C+
Sbjct: 164 TLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGL 223
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------------- 309
+ N LW AM++GYA+NG +AV+ F
Sbjct: 224 EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCF 283
Query: 310 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ + +I KS + +NV V + L+DMYAKCG + A + D DVV +++ VG+
Sbjct: 284 GEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVR 343
Query: 369 HGLGEEGWVLFHHIRKHG 386
HGL EE LF ++ HG
Sbjct: 344 HGLEEEALRLFKNM--HG 359
>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 150/355 (42%), Gaps = 95/355 (26%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD-- 227
+ NNV V T LIDMY+KC VD + FD +DK+VV +AM+ Y +E
Sbjct: 190 FDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVR 249
Query: 228 -----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
G+ +N Y + L ++++ K VH +I+ GLE +L I+ T V Y
Sbjct: 250 EMMRLGIKANYVT-YNSLLSSFSGPKYMQYCKQVHCSIIRCGLE--CNLYIAATLVTVYS 306
Query: 283 ------------------PNVTLWNAMISGYAKNGYAEEAVKLFPKW------MDYY--- 315
+ WNA+I+GY+ G E+A+K F + MD+Y
Sbjct: 307 KCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKCFCEMRHANIKMDFYTFT 366
Query: 316 ---------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
I K+ Y ++V V L+ MYA+CG++D + F D
Sbjct: 367 SLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNGLVSMYARCGAIDDSKRVFWLMEDH 426
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------------- 389
DVV +A+ G HG G E LF +RK I+P
Sbjct: 427 DVVSWNALLTGCAHHGFGNEAVELFEQMRKTKIKPNSTTFLAVLSACSHVGSVDKGLEYF 486
Query: 390 ------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
R +HYA VVD+ RAGY + A I MP++ SV +ALLSA
Sbjct: 487 DFMRSDISLEPLRVEHYASVVDIFGRAGYLSEAEAIINCMPMDPGPSVYKALLSA 541
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 120/321 (37%), Gaps = 69/321 (21%)
Query: 130 YQPNVTLRNAMISGYAKNG------YAEEAVKLFPKWMDYYIG--------KSEYRNNVI 175
YQ T + + + +NG + + V K+ Y +G + + +NV
Sbjct: 46 YQYYQTFDSDLFAHLLRNGSFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVH 105
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLHEWSAFGSFDGLLSNEE 234
+ + ++DMYAKC + A F+ +++ V +++I GY + A
Sbjct: 106 ICSAVVDMYAKCSEIQSAHEVFNEMPERNDVTWNSLIFGYLNVMPTCAMRGVTSF----- 160
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR----------- 280
T L LE G VHG +KLG + LI + + C
Sbjct: 161 -SVSTCLVVCSQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVFDY 219
Query: 281 -YQPNVTLWNAMISGYAKNGYAEEAVKLF------------------------PKWMDY- 314
NV W AM++ YA+N +EA+ L PK+M Y
Sbjct: 220 MVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPKYMQYC 279
Query: 315 -----YIGKSEYRNNVIVNTVLIDMYAKCGS--VDLAPMFFDRTLDKDVVMRSAMTVGYG 367
I + N+ + L+ +Y+KC + D + L D + +A+ GY
Sbjct: 280 KQVHCSIIRCGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQL-SDQISWNAVIAGYS 338
Query: 368 LHGLGEEGWVLFHHIRKHGIE 388
GLGE+ F +R I+
Sbjct: 339 NLGLGEDALKCFCEMRHANIK 359
>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Glycine max]
Length = 666
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 131/517 (25%), Positives = 210/517 (40%), Gaps = 117/517 (22%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
P+ T P+V+KAC L + +G +HGQ F G Y D T+ L +Y
Sbjct: 111 PDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFG----YDSDTFVQNTL--LAMYMNAGEK 164
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
E + FD + + T ++ E V+G M+ +G+E + ++S+
Sbjct: 165 EAAQL-VFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPA 223
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
C NV L + + + G+ W N++V L+DMY KC
Sbjct: 224 CGLLKNVELGREVHTLVQEKGF----------W-----------GNIVVRNALVDMYVKC 262
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EWSAFGSFDGLLSNE---ENEYGTA--L 241
G + A + DKDVV + +I GY L+ + + G++ E N A L
Sbjct: 263 GQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLL 322
Query: 242 DCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVT 286
L +L GK +H + I+ +E E LI++ A C +
Sbjct: 323 SACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTA 382
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWM------DY------------------------YI 316
WNA++SG+ +N A EA++LF + + D+ Y+
Sbjct: 383 PWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYL 442
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMTVGYGLHGLGEE 374
+S + + V ++L+D+Y+KCGS+ A F+ DKD+++ SA+ YG HG G+
Sbjct: 443 IRSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKM 502
Query: 375 GWVLFHHIRKHGIEPRH------------------------------------QHYARVV 398
LF+ + + G++P H HY ++
Sbjct: 503 AVKLFNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMI 562
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLL RAG N A+ I MPI +V ALL A I
Sbjct: 563 DLLGRAGRLNDAYNLIRTMPITPNHAVWGALLGACVI 599
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 59/311 (18%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDK-----DVVMRSAMIVGYGLHEWSAFGSF--DGLLSN 232
L YA+C A FD+ + +MR + +G + F G
Sbjct: 52 LATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLP 111
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY----------- 281
++ Y + DL ++ G +HG K G + SD + T + Y
Sbjct: 112 DKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYD--SDTFVQNTLLAMYMNAGEKEAAQL 169
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY--------------------- 314
+ V WN MI+GY +N AE+AV ++ + MD
Sbjct: 170 VFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKN 229
Query: 315 ---------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ + + N++V L+DMY KCG + A + DKDVV + + G
Sbjct: 230 VELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLING 289
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA---FKFIMNMPIELR 422
Y L+G +L ++ G++P A ++ Y NH + + IE
Sbjct: 290 YILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESE 349
Query: 423 LSVRRALLSAW 433
+ V AL++ +
Sbjct: 350 VIVETALINMY 360
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 171/440 (38%), Gaps = 136/440 (30%)
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC----------- 128
E +G+AL L L G VH + K + LI + + C
Sbjct: 147 EYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFS 206
Query: 129 -RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD------------------------- 162
+ N+ N++I+ Y +NG A EA+++F + MD
Sbjct: 207 GMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKE 266
Query: 163 ------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
+ +++R+++++ L+DMYAKC V+ A FDR ++VV ++M
Sbjct: 267 GLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSM----- 321
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
V G+ ++ + +T
Sbjct: 322 ---------------------------------------VSGYARAASVKAARFMFSKMT 342
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------PKWMDYYIGKSEYRNNVIVNTV 330
Q NV WNA+I+GY +NG EEA++LF W +Y + ++++ V
Sbjct: 343 -----QRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNS 397
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------ 372
LIDMY KCGS++ F++ ++D V +A+ VGY +G G
Sbjct: 398 LIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPD 457
Query: 373 -----------------EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
EEG F + +HG+ P HY +VDLL RAG N A I
Sbjct: 458 HVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIE 517
Query: 416 NMPIELRLSVRRALLSAWKI 435
MP+ V +LL+A K+
Sbjct: 518 AMPVNPDAVVWGSLLAACKV 537
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 79/265 (29%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+++ + + LID+Y KC +D A FDR ++ +++I
Sbjct: 44 TQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLI--------------- 88
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
+L+ FL++ + G M +P+
Sbjct: 89 SVLTKSG--------------FLDEAARLFGSMP--------------------EPDQCS 114
Query: 288 WNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIG-------- 317
WN+M+SG+A++ EE+++ F K MD +G
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS Y +V + + LIDMY+KCGSV A F +++++V +++ Y +G E
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLA 402
+F + G+EP A VV A
Sbjct: 235 VFVRMMDSGLEPDEVTLASVVSACA 259
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 135/509 (26%), Positives = 200/509 (39%), Gaps = 118/509 (23%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
+VLKAC L G ++H QI +G ++ GL +D+Y E S
Sbjct: 143 IVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGL-------VDMYAKCREVEDSR-RV 194
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 134
FD +L + + + + L++G ++ M + +E L SL C
Sbjct: 195 FDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTAC------ 248
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
T A+ G KW+ Y+ KS + N + T L+D+Y KCG + A
Sbjct: 249 TKLGALHQG---------------KWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAF 293
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSF-----DGLLSNEENEYGTALDCSCDL 247
FD D+V +AMIVGY + A F LL N + L
Sbjct: 294 SVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTT-SSVLSACAQT 352
Query: 248 EFLEQGKIVHGFMIKLGLELES--DLLISLTAVCR------------YQPNVTLWNAMIS 293
L G+ VH IKLG E + + L+ + A C + +V WN++IS
Sbjct: 353 GSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIIS 412
Query: 294 GYAKNGYAEEAVKLFPKWMD----------------------YYIGKSEY---------R 322
GY +NGYA EA++LF + Y +G S +
Sbjct: 413 GYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLS 472
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+V V T L++ YAKCG + A + FD +K+ + SAM GYG+ G LF +
Sbjct: 473 GSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDM 532
Query: 383 RKHGIEPRH------------------------------------QHYARVVDLLARAGY 406
K +EP +HYA +VDLLARAG
Sbjct: 533 LKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGR 592
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A FI +PI+ +S+ A L ++
Sbjct: 593 LEEALDFIEKIPIQPDVSLLGAFLHGCRL 621
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 120/512 (23%), Positives = 186/512 (36%), Gaps = 135/512 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFDGLF---- 51
M+ V N T ++ AC L +L G VHG + GF LV L D F
Sbjct: 229 MREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGD 288
Query: 52 --DRTIVFLDLYHLWSRTEWSAF-------------------GSFDGLLSNEENEYGTAL 90
D VF +L + W+A + LL N + L
Sbjct: 289 IRDAFSVFDELSTI-DLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTT-SSVL 346
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELES--DLLISLTAVCR------------YQPNVTL 136
L G+ VH IKLG E + + L+ + A C + +V
Sbjct: 347 SACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIA 406
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMD----------------------YYIGKSEY---- 170
N++ISGY +NGYA EA++LF + Y +G S +
Sbjct: 407 WNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAI 466
Query: 171 -----RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
+V V T L++ YAKCG + A + FD +K+ + SAMI GYG+
Sbjct: 467 KAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQG------ 520
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
DCS LE G M+K LE PN
Sbjct: 521 ----------------DCSRSLELF-------GDMLKEKLE----------------PNE 541
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
++ ++S + +G E + F Y + ++ ++D+ A+ G ++ A
Sbjct: 542 VIFTTILSACSHSGMLGEGWRYFNTMCQVY----NFVPSMKHYACMVDLLARAGRLEEAL 597
Query: 346 MFFDRT-LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLAR 403
F ++ + DV + A G LH + G V + + + P + +Y + +L A
Sbjct: 598 DFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLE--LHPDKACYYVLMSNLYAS 655
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G + A N +EL A L W +
Sbjct: 656 EGRWSQA-----NQVMELMKQRGLAKLPGWSL 682
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/531 (23%), Positives = 206/531 (38%), Gaps = 139/531 (26%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQI----------FSLGFLVCYLFDGLFDRTI 55
+ PN T P VLKAC AL G +H I S + Y G D
Sbjct: 115 ITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAK 174
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 115
D H W++ S L +E +L ++
Sbjct: 175 EVFDKMHKRDVVAWNSMISGFSLHEGSYDEVA-----------------------RLLVQ 211
Query: 116 LESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 175
+++D+ + + + P V N++ G +G+ + + +V+
Sbjct: 212 MQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCV---------------RRGFVGDVV 256
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSN 232
V T ++D+Y KC +D A FD + K+ V SAM+ Y + ++ A F LL
Sbjct: 257 VGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLML 316
Query: 233 EEN-------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC--- 279
+++ T + +L L G +H + IK G L+ + L+S+ A C
Sbjct: 317 KDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGII 376
Query: 280 ----RYQPNVTL-----WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE---------- 320
R+ + L + A+ISGY +NG +EE +++F + I +
Sbjct: 377 NGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPAC 436
Query: 321 --------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+ + ++ LIDMYAKCG +D A FDR + +V +
Sbjct: 437 AHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWN 496
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------------------- 389
M + YG+HG+G E +LF +++ G++P
Sbjct: 497 TMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQD 556
Query: 390 -----RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R +HYA +VDLL+RAG FI MP+E + V ALLSA ++
Sbjct: 557 FGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRV 607
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 55/189 (29%)
Query: 236 EYGTALDCSC-DLEFLEQGKIVHGFMIK-LGLELESDL---------LISLTAVCR---- 280
EY T L SC + L +GK++H ++K L E++L L+ L C
Sbjct: 10 EYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKI 69
Query: 281 ---------YQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------- 321
++P NV LWN +I YA NG EEA+ L+ K + Y I + +
Sbjct: 70 ARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKAC 129
Query: 322 ---------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+NV V+T L+D YAKCG +D A FD+ +DVV +
Sbjct: 130 SALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWN 189
Query: 361 AMTVGYGLH 369
+M G+ LH
Sbjct: 190 SMISGFSLH 198
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/481 (25%), Positives = 187/481 (38%), Gaps = 142/481 (29%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---C----- 128
G+ N + L CS L+ L G+ +HG ++K GL++E L+ SL + C
Sbjct: 206 GIYPNRVACVSSILSCS-SLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKN 264
Query: 129 ------------RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM--------------- 161
+ N + N MISGY NG +A+ LF K M
Sbjct: 265 AENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLF 324
Query: 162 -------DYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
D GK + +NN+ V T L+DMY KCG + F R+ + +++
Sbjct: 325 SLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLI 384
Query: 207 MRSAMIVG--------YGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 258
M SA+I L + F DGL + L L +G +HG
Sbjct: 385 MWSAVISNCAQSGCPTKALELFYEFKMEDGLA--DSGILVAVLRACSSLTLKPEGMQIHG 442
Query: 259 FMIKLGLELE---SDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEE 303
K+G + L+ L A CR Q ++ WNA+ISGYA++ A+E
Sbjct: 443 LATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADE 502
Query: 304 AVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVLID 333
A+K F K + Y+ + + V+V+ LI
Sbjct: 503 ALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIA 562
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-- 391
YAKCG ++ + F++ +++ V +++ +G G+H +E VLF + GI+P H
Sbjct: 563 TYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVT 622
Query: 392 ----------------------------------QHYARVVDLLARAGYSNHAFKFIMNM 417
+ Y +VDLL RAG+ N A+ IM M
Sbjct: 623 FTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAM 682
Query: 418 P 418
P
Sbjct: 683 P 683
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 137/340 (40%), Gaps = 90/340 (26%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------------- 171
+V+ N +I Y ++G+ ++A+ ++ K +D + E+R
Sbjct: 72 SVSFANNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQI 131
Query: 172 ----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY------ 215
++V V L+ MY KCG V+ A F++ + D+V + MI G+
Sbjct: 132 HGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDY 191
Query: 216 --GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
L + + G+ N + L CS L+ L G+ +HG ++K GL++E L+
Sbjct: 192 TRSLMFFRSMVWEFGIYPNRVACVSSILSCS-SLQSLTHGREIHGVVVKSGLDVEEYLVS 250
Query: 274 SLTAV---C-----------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM- 312
SL + C + N +WN MISGY NG +A+ LF K M
Sbjct: 251 SLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMV 310
Query: 313 ---------------------DYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDL 343
D GK + +NN+ V T L+DMY KCG +
Sbjct: 311 WGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGT 370
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
F R+ + +++M SA+ G + LF+ +
Sbjct: 371 GLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFK 410
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/473 (26%), Positives = 182/473 (38%), Gaps = 139/473 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAV-----CRYQPNVTLR----------NAMISG 143
LE GK VHG +K GL+ + + SL + C Y N+MIS
Sbjct: 920 LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISS 979
Query: 144 YAKNGYAEEAVKLFPKWM------DYYIGKSEYRN------------------------- 172
A++ EE+V LF + D++ S R
Sbjct: 980 CAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIA 1039
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSF---- 226
+ V T LID+Y+K G ++ A F D D+ +AM+ GY G A F
Sbjct: 1040 DSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIH 1099
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-------------- 271
G S++ A C C L L+QGK +H IK G +SDL
Sbjct: 1100 KSGEKSDQITLATAAKACGC-LVLLDQGKQIHAHAIKAG--FDSDLHVNSGILDMYIKCG 1156
Query: 272 -LISLTAVCRY--QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------- 321
+++ V Y P+ W +MISG NG ++A++++ + + EY
Sbjct: 1157 DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 1216
Query: 322 --------------RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
NVI V T L+DMYAKCG+++ A F + +++ +
Sbjct: 1217 ASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 1276
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
+AM VG HG EE LF ++ HGIEP
Sbjct: 1277 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMP 1336
Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY+ +VD L RAG A K I MP + S+ RALL A +I
Sbjct: 1337 NDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRI 1389
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 49/212 (23%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239
L+ MY+KCGS+ A FD T ++D+V +A++ Y S D SN+ N
Sbjct: 662 LLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA-------ASVD---SNDGN---- 707
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG--YAK 297
+ GL L L SL + R L + SG +A
Sbjct: 708 ---------------------AQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
G A+K+ +W +V V+ L+++Y+KCG + A + FD ++DVV
Sbjct: 747 EGVHGYAIKIGLEW------------DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVV 794
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ + M GY GL +E + LF + G+ P
Sbjct: 795 LWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRP 826
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 50/174 (28%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDL---------------LISLTAVCRY--QPNV 134
C C L L+QGK +H IK G + SDL +++ V Y P+
Sbjct: 1117 CGC-LVLLDQGKQIHAHAIKAGFD--SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDD 1173
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY---------------------RNN 173
+MISG NG ++A++++ + + EY N
Sbjct: 1174 VAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHAN 1233
Query: 174 VI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
VI V T L+DMYAKCG+++ A F + +++ + +AM+VG H
Sbjct: 1234 VIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 1287
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 128/329 (38%), Gaps = 70/329 (21%)
Query: 113 GLELESDLLISLTAVCRYQPNVTLRNAMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEY 170
GL L L SL + R L+ + SG +A G A+K+ +W
Sbjct: 711 GLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEW---------- 760
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
+V V+ L+++Y+KCG + A + FD ++DVV+ + M+ GY GL E AF F
Sbjct: 761 --DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL-EKEAFQLFS 817
Query: 228 GL----LSNEENEYGTALDCSCDLEFLEQGK----IVHGFMIKLGLELESDLLISLTAVC 279
L +E L+ ++ + ++GK V + KL L ++
Sbjct: 818 EFHRSGLRPDEFSVQLILNGVSEVNW-DEGKWLADQVQAYAAKLSLSDDN---------- 866
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIG 317
P+V WN +S G A++ F D +G
Sbjct: 867 ---PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG 923
Query: 318 --------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
KS ++V V L++MY+K G A F+ D++ ++M
Sbjct: 924 KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983
Query: 370 GLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
L EE LF + G++P H A V+
Sbjct: 984 SLEEESVNLFIDLLHEGLKPDHFTLASVL 1012
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--------- 132
+E + T + S + LEQG+ +H +IKL + SD + + V Y
Sbjct: 1207 DEYTFATLIKASSCVTALEQGRQLHANVIKL--DCVSDPFVGTSLVDMYAKCGNIEDAYR 1264
Query: 133 --------NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
N+ L NAM+ G A++G AEEAV LF + I
Sbjct: 1265 LFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGI 1305
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 122/470 (25%), Positives = 187/470 (39%), Gaps = 141/470 (30%)
Query: 102 GKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLRNAMISGYAK 146
G +VHG+++K G + + LIS A Q ++ N++I G A
Sbjct: 3 GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62
Query: 147 NGYAEEAVKLFPK-WMD---------------------YYIGKSEY----RNNVIVNT-- 178
NG ++AV+LF + W++ +IG + R +I T
Sbjct: 63 NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122
Query: 179 --VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD--------- 227
L+DMY+ C F K+VV +AMI Y + G FD
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSY-----TRAGHFDKVAGLFQEM 177
Query: 228 GLLSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY- 281
GL + + +ALD E L+ GK VHG+ I+ G+E ++ L+ + C Y
Sbjct: 178 GLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYM 237
Query: 282 -----------QPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+ + WN +I GY+++ A EA LF
Sbjct: 238 EEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAA 297
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
+ M Y + Y + V L+DMY KCG++ LA FD +K+++ +
Sbjct: 298 SLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTI 357
Query: 362 MTVGYGLHGLG-----------------------------------EEGWVLFHHIR-KH 385
M GYG+HG G +EGW F+ +R +H
Sbjct: 358 MIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEH 417
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
IEP+ +HYA +VDLL G A++FI MPIE S+ +LL +I
Sbjct: 418 RIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRI 467
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 146/584 (25%), Positives = 220/584 (37%), Gaps = 165/584 (28%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------CYLFDGLFDRTIVFLDLY 61
T P V+KAC +G +HG + +G L+ Y G D +
Sbjct: 33 TFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYM 92
Query: 62 HLWSRTEWSAFGS-----------FDGLLSNEENEYGTALDCS--------CDLEF-LEQ 101
+ + W++ S FD L+ E G D + C E ++
Sbjct: 93 PVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQM 152
Query: 102 GKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYAK 146
G +HG +KLGL + ++ L+ + + C Y + N N MI G
Sbjct: 153 GIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCT 212
Query: 147 NGYAEEAVKLFP-------------------------------KWMDYYIGKSEYRNNVI 175
GY EA LF K + Y + ++ + +
Sbjct: 213 KGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDEL 272
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG-----SFDG 228
V + YAKCG + A F K V +A+I G + A ++ G
Sbjct: 273 VANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSG 332
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQPNV 285
L+ + G+ L S L+ L GK VHGF+++ GLE++S + ISL ++ C +
Sbjct: 333 LVPDWFT-IGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSA 391
Query: 286 TL------------WNAMISGYAKNGYAEEAVKLFPKWMD-------------------- 313
L WNAMISGY++NG E+A+ LF K +
Sbjct: 392 RLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQ 451
Query: 314 ----------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
Y K+ +V V IDMYAK G + + FD +KD+ +A+
Sbjct: 452 SALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAII 511
Query: 364 VGYGLHGLGEEGWVLFHHIRK------------------------------------HGI 387
YG+HG GEE LF +RK HGI
Sbjct: 512 AAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGI 571
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
EP+ +HYA V+D+L RAG + A + + MP + V +LLS
Sbjct: 572 EPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLS 615
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 187/490 (38%), Gaps = 135/490 (27%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRYQPNVT 135
++ +E+ L C L G + HG+++KLG + + LIS A +
Sbjct: 413 IAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAV 472
Query: 136 LR------------NAMISGYAKNGYAEEAVKLFPK-WMD-------------------- 162
L N++ISG + NG EA++LF + W
Sbjct: 473 LVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSR 532
Query: 163 -YYIGKSEYRNNVIVNTV--------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
++ G+ + +V + L+DMY+ C F K+VV +AMI
Sbjct: 533 YWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMIT 592
Query: 214 GYGLHEWSAFGSFDGLLSN--------EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
Y F GLL + +AL E L+QGK VHG+ I+ G+
Sbjct: 593 SY--MRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGM 650
Query: 266 EL---ESDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP- 309
E ++ L+ + CR +V WN +I GY++N + E+ LF
Sbjct: 651 EKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSD 710
Query: 310 ----------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ + Y + + + + L+DMY KCG++
Sbjct: 711 MLLQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGAL 770
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------ 389
+A + FDR K+++ + M GYG+HG G+ LF +R GIEP
Sbjct: 771 LVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYAC 830
Query: 390 ------------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
+ +HY +VDLL+R G A +FI +MPIE S+
Sbjct: 831 CHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSI 890
Query: 426 RRALLSAWKI 435
+LL +I
Sbjct: 891 WVSLLHGCRI 900
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 167/455 (36%), Gaps = 98/455 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGL 50
MQ V+P+ VLK +L SL G +HG + LG + Y G
Sbjct: 195 MQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGR 254
Query: 51 FDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMI 110
+ D H W++ G SN +GTA+D + M
Sbjct: 255 MEDAARVFDSMHPRDAISWNSM--IGGCFSN--GWHGTAVD-------------LFSKMW 297
Query: 111 KLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 170
G E+ S ++S+ C L +I G A +GY+ ++ L+ +D
Sbjct: 298 SQGTEISSVTVLSVLPAC-----AGLGYGLI-GKAVHGYSVKSGLLWG--LDSV---QSG 346
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
++ + + L+ MY KCG + A FD K V +I+G ++ G F+ L
Sbjct: 347 IDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMG----GYAKVGEFEESL 402
Query: 231 S-----------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLT 276
S +E+ L C L G + HG+++KLG + + LIS
Sbjct: 403 SLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFY 462
Query: 277 AVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFPK-WMD---------- 313
A + L WN++ISG + NG EA++LF + W
Sbjct: 463 AKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLL 522
Query: 314 -----------YYIGKSEYRNNVIVNTV--------LIDMYAKCGSVDLAPMFFDRTLDK 354
++ G+ + +V + L+DMY+ C F K
Sbjct: 523 SVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQK 582
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+VV +AM Y GL ++ L + GI P
Sbjct: 583 NVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRP 617
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 71/326 (21%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAMIVGYGLHE--WSAFGSFDGL- 229
++ L+ Y KCG + A FD + DV + ++++ Y A F +
Sbjct: 137 VLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQ 196
Query: 230 ---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC---- 279
+S + + L C L L +G+++HG + KLGL ++ LI++ + C
Sbjct: 197 CCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRME 256
Query: 280 --------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK-W------------------- 311
+ + WN+MI G NG+ AV LF K W
Sbjct: 257 DAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACA 316
Query: 312 -MDY-YIGKSEYR------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ Y IGK+ + ++ + + L+ MY KCG + A FD
Sbjct: 317 GLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAM 376
Query: 352 LDK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL-----ARAG 405
K +V + + + GY G EE LF + + GI P + ++ + AR G
Sbjct: 377 SSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDG 436
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLS 431
H +I+ + + +V AL+S
Sbjct: 437 LVAHG--YIVKLGFGAQCAVCNALIS 460
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 221/569 (38%), Gaps = 171/569 (30%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDR-------TIVFLDL 60
T P VLKAC LPS G HG I GF +C ++ R +++F ++
Sbjct: 119 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 178
Query: 61 Y----------------HLWSRTEWSAFGSFDGLL-------SNEENEYGTALDC--SC- 94
H+ S W+A F + +NE ++ + ++ +C
Sbjct: 179 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 238
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAV 154
L+ + Q K VHG I+ G L+ V + NA+I YAK G E AV
Sbjct: 239 SLKAVPQTKEVHGNAIRNGTFLD----------------VFVGNALIDAYAKCGLMENAV 282
Query: 155 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD----RTLDKDVVMRSA 210
K+F M++ +V+ ++ Y++ G+ A F + D+V +A
Sbjct: 283 KVF-NMMEF--------KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTA 333
Query: 211 MIVGYGL----HE-WSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK- 262
+I GY HE + F F G L N C+ L QG +H + +K
Sbjct: 334 VIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACA-SLGAFSQGMEIHAYSLKN 392
Query: 263 LGLELESDL------------LISLTAVCRY--------------QPNVTLWNAMISGYA 296
L L++D LI + + CR + NV W MI G+A
Sbjct: 393 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 452
Query: 297 KNGYAEEAVKLFPKWMD--YYIGKSEYRNNVI---------------------------- 326
+ G + +A+KLF + + Y + + Y + I
Sbjct: 453 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 512
Query: 327 ----VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
V LI+MY+KCG VD A FD K + ++M GYG+HG G E +F +
Sbjct: 513 SAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 572
Query: 383 RK------------------------------------HGIEPRHQHYARVVDLLARAGY 406
RK +G+ PR +HYA +DLLAR G
Sbjct: 573 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 632
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ A+K + +MP+E V ALLSA ++
Sbjct: 633 LDKAWKTVKDMPMEPTAVVWVALLSACRV 661
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 154/360 (42%), Gaps = 96/360 (26%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
S +R+++++ L+++YAKCG + A FD +DVV +A+I GY H+ D
Sbjct: 44 SRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQ----D 99
Query: 228 GLLSNEE--------NEYGTA--LDCSCDLEFLE--QGKIVHGFMIKLGLELE---SDLL 272
LL E N++ A L + + + QG+ +HG ++ G + S +
Sbjct: 100 ALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAI 159
Query: 273 ISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP----------- 309
+ + A C + N WNA+I+GYA+ G ++A LF
Sbjct: 160 LDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTH 219
Query: 310 -------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
KW+ + K + V L+DMYAK GS++ A FDR
Sbjct: 220 FTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDR 279
Query: 351 TLDKDVVMRSAMTVGYGLHGLG-----------------------------------EEG 375
+DVV ++M GY HGLG +EG
Sbjct: 280 LAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEG 339
Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
F ++K+ +EP+ HY +VDLL RAG+ + A +FI MPI+ +V ALL A ++
Sbjct: 340 RHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRM 399
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 45/163 (27%)
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYA 145
QG+ +HG ++ G + S ++ + A C + N NA+I+GYA
Sbjct: 136 QGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYA 195
Query: 146 KNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVI 175
+ G ++A LF KW+ + K +
Sbjct: 196 RKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAF 255
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V L+DMYAK GS++ A FDR +DVV ++M+ GY H
Sbjct: 256 VGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQH 298
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 163/392 (41%), Gaps = 104/392 (26%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
Q +V NAMI+GY +NG E+A+KLF + + +VI ++ YA+CG V
Sbjct: 226 QRDVVSWNAMIAGYVQNGLIEDALKLF---------QEIPKRDVITWNTMMAGYAQCGDV 276
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
+ A F++ ++++V + MI GY + + E + +
Sbjct: 277 ENAVELFEKMPEQNLVSWNTMIAGY-------------VQNGSVKEAFKLFQIMPERNVI 323
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF-- 308
++ GF +E E+ L C NV WNAMI+GY++NG AE A+KLF
Sbjct: 324 SWNAVISGFAQNGQVE-EALKLFKTMPEC----NVVSWNAMIAGYSQNGQAENALKLFGQ 378
Query: 309 -------PKWMDYYIG---------------------KSEYRNNVIVNTVLIDMYAKCGS 340
P + I +S ++++V+V L+ MYAKCGS
Sbjct: 379 MQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGS 438
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------- 391
++ A FDR +D SAM VGY ++G +E LF ++ G++P
Sbjct: 439 IEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSA 498
Query: 392 ---------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
+HY ++DLL RAG + A I MPI+
Sbjct: 499 CCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDAD 558
Query: 425 VRRALLSAWKIPMQQWENMLQTIRGIDEGEKT 456
+ +LLSA + T ID GEK
Sbjct: 559 MWGSLLSACR-----------THNNIDLGEKV 579
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 41/262 (15%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF----DGLLSNE 233
L+ +Y K GS+ A FD K+VV +AMI Y HE A G F D +
Sbjct: 106 LVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPN 165
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------ 281
+ + L DLE L + H ++K G E S++ + V Y
Sbjct: 166 HFTFASILPACTDLEVLGE---FHDEIVKGGFE--SNVFVGNGLVDMYAKRGCIEFAREL 220
Query: 282 -----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
Q +V WNAMI+GY +NG E+A+KLF + + +VI ++ YA
Sbjct: 221 FDKMPQRDVVSWNAMIAGYVQNGLIEDALKLF---------QEIPKRDVITWNTMMAGYA 271
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYAR 396
+CG V+ A F++ ++++V + M GY +G +E + LF + + + +
Sbjct: 272 QCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNV----ISWNA 327
Query: 397 VVDLLARAGYSNHAFKFIMNMP 418
V+ A+ G A K MP
Sbjct: 328 VISGFAQNGQVEEALKLFKTMP 349
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 130/532 (24%), Positives = 212/532 (39%), Gaps = 136/532 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ + N T +LK L + R+HG ++ LGF G ++ + L
Sbjct: 544 MQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGF-------GSYNTVVNSLIA 596
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI---VHGFMIKLGLELE 117
+ S SA FD L + + + + C + + V ++++G++L
Sbjct: 597 TYFKSGEVDSAHKLFDELGDRDVVSWNSMIS-GCVMNGFSHSALEFFVQMLILRVGVDLA 655
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177
+ L++ A C +++L A+ K ++ E V+ N
Sbjct: 656 T--LVNSVAACANVGSLSLGRALHGQGVKACFSRE---------------------VMFN 692
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL-LSNE 233
L+DMY+KCG+++ A F++ K VV +++I Y GL++ D + L E
Sbjct: 693 NTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYD-------DAIRLFYE 745
Query: 234 ENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGLEL---ESDLLISLTAVCR 280
G + D C+C L++G+ VH ++ K + L S+ L+ + A C
Sbjct: 746 MESKGVSPDVYSMTSVLHACACG-NSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCG 804
Query: 281 YQ------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY------------- 315
++ WN MI GY+KN EA+KLF +
Sbjct: 805 SMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLLPA 864
Query: 316 ----------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
I ++ Y + + V LIDMY KCGS+ A + FD +KD++
Sbjct: 865 CGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITW 924
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI-------------------------------- 387
+ M G G+HGLG E F +R GI
Sbjct: 925 TVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMIS 984
Query: 388 ----EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP+ +HYA +VDLLAR G + A+ I MPI+ ++ ALL +I
Sbjct: 985 ECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRI 1036
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 157/399 (39%), Gaps = 99/399 (24%)
Query: 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR----------- 129
N Y + L + + L++GK+VH + G+ +E L L+ + C
Sbjct: 452 NAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDH 511
Query: 130 --YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV----------- 176
V L N M+S YAK G E++ LF K I + Y + I+
Sbjct: 512 ILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGE 571
Query: 177 ----------------NTV---LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
NTV LI Y K G VD A FD D+DVV ++MI G +
Sbjct: 572 CKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVM 631
Query: 218 HEW--SAFGSFDGLL-----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-- 268
+ + SA F +L + + C+ ++ L G+ +HG +K E
Sbjct: 632 NGFSHSALEFFVQMLILRVGVDLATLVNSVAACA-NVGSLSLGRALHGQGVKACFSREVM 690
Query: 269 -SDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
++ L+ + + C Q V W ++I+ Y + G ++A++LF
Sbjct: 691 FNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKG 750
Query: 309 ---------------------PKWMDY--YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
K D YI K+ + V+ L+DMYAKCGS++ A
Sbjct: 751 VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAY 810
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ F + KD+V + M GY + L E LF ++K
Sbjct: 811 LVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK 849
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 221/569 (38%), Gaps = 171/569 (30%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDR-------TIVFLDL 60
T P VLKAC LPS G HG I GF +C ++ R +++F ++
Sbjct: 12 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71
Query: 61 Y----------------HLWSRTEWSAFGSFDGLL-------SNEENEYGTALDC--SC- 94
H+ S W+A F + +NE ++ + ++ +C
Sbjct: 72 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAV 154
L+ + Q K VHG I+ G L+ V + NA+I YAK G E AV
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLD----------------VFVGNALIDAYAKCGLMENAV 175
Query: 155 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD----RTLDKDVVMRSA 210
K+F M++ +V+ ++ Y++ G+ A F + D+V +A
Sbjct: 176 KVF-NMMEF--------KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTA 226
Query: 211 MIVGYGL----HE-WSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK- 262
+I GY HE + F F G L N C+ L QG +H + +K
Sbjct: 227 VIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACA-SLGAFSQGMEIHAYSLKN 285
Query: 263 LGLELESDL------------LISLTAVCRY--------------QPNVTLWNAMISGYA 296
L L++D LI + + CR + NV W MI G+A
Sbjct: 286 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 345
Query: 297 KNGYAEEAVKLFPKWMD--YYIGKSEYRNNVI---------------------------- 326
+ G + +A+KLF + + Y + + Y + I
Sbjct: 346 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 405
Query: 327 ----VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
V LI+MY+KCG VD A FD K + ++M GYG+HG G E +F +
Sbjct: 406 SAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 465
Query: 383 RK------------------------------------HGIEPRHQHYARVVDLLARAGY 406
RK +G+ PR +HYA +DLLAR G
Sbjct: 466 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 525
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ A+K + +MP+E V ALLSA ++
Sbjct: 526 LDKAWKTVKDMPMEPTAVVWVALLSACRV 554
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 131/523 (25%), Positives = 210/523 (40%), Gaps = 117/523 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ++ ++P+ T +L AC A+ L G ++H + G + Y+ +G LDL
Sbjct: 235 MQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEG------SLLDL 288
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
Y E A FD + L ++ L + + M+ G+
Sbjct: 289 YVKSGDIE-EALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFT 347
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
+ C + + L + S KNG+ ++++ V+ VL
Sbjct: 348 YPCMLRTCTHTGEIGLGEQIHSLTIKNGF---------------------QSDMYVSGVL 386
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLS----NEE 234
IDMY+K G +D A D +KDVV ++MI GY HE+ A +F + + +
Sbjct: 387 IDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDN 446
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------ 279
+A+ ++ + QG +H + G + + L+ L A C
Sbjct: 447 IGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEA 506
Query: 280 -RYQPNVTLWNAMISGYAKNGYAEEAVKLF------------------------------ 308
++ +T WN +ISG+A++G EEA+K+F
Sbjct: 507 IEHKEGIT-WNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQ 565
Query: 309 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM-FFDRTLDKDVVMRSAMTV--- 364
K + + K+ Y + ++ LI +Y KCGS++ A M FF+ T +V + +T
Sbjct: 566 GKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQ 625
Query: 365 -GYGLH------------------------------GLGEEGWVLFHHI-RKHGIEPRHQ 392
G GL GL EEG F + +HGI PR
Sbjct: 626 HGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPD 685
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA VVD+L RAG + A +F+ MPI V R LLSA K+
Sbjct: 686 HYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKV 728
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 153/400 (38%), Gaps = 106/400 (26%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCR-------------YQ 131
+ L E + G+++H + K G E+ + LISL CR Y
Sbjct: 148 SILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYC 207
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFP------------------------------KWM 161
+VT N +ISG+A+ G+ + A+ +F K +
Sbjct: 208 DSVTF-NTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQL 266
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
Y+ K+ + I+ L+D+Y K G ++ A FD +VV+ + M+V YG +
Sbjct: 267 HSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDL 326
Query: 222 AFGSFD--------GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
A SFD G+ N+ Y L + G+ +H IK G +SD+ +
Sbjct: 327 A-KSFDIFYRMLAAGVRPNKFT-YPCMLRTCTHTGEIGLGEQIHSLTIKNG--FQSDMYV 382
Query: 274 SLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------ 310
S + Y + +V W +MI+GY ++ + +EA++ F +
Sbjct: 383 SGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGI 442
Query: 311 WMD------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
W D + S Y +V + L+ +YA+CG A
Sbjct: 443 WPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFS 502
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
F+ K+ + + + G+ GL EE +F + + G
Sbjct: 503 SFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAG 542
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 114/284 (40%), Gaps = 62/284 (21%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
G S YR I+ +LID+YAK G V A F+ +D V A++ GY + G
Sbjct: 72 GLSGYR---IIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYA---QNGLGE 125
Query: 226 FDGLLSNEENEYG---------TALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLI 273
L E + G + L E + G+++H + K G E+ + LI
Sbjct: 126 EAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALI 185
Query: 274 SLTAVCR-------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP----------- 309
SL CR Y +VT +N +ISG+A+ G+ + A+ +F
Sbjct: 186 SLYLRCRSFRLADRVFCDMLYCDSVT-FNTLISGHAQCGHGDRALGIFDEMQLSGLSPDS 244
Query: 310 -------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
K + Y+ K+ + I+ L+D+Y K G ++ A FD
Sbjct: 245 VTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDS 304
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
+VV+ + M V YG + + +F+ + G+ P Y
Sbjct: 305 GDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTY 348
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 147/346 (42%), Gaps = 89/346 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF----DGL 229
V LI MY++CG + A FD +KD+V ++MI GY ++ A G F D
Sbjct: 163 VRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAG 222
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC------- 279
+E + L DL L G + GF+++ ++L S LI + C
Sbjct: 223 FEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSAR 282
Query: 280 -----RYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------- 309
+ +V WNAMI+GYA+NG ++EA+ LF
Sbjct: 283 RVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIG 342
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
KW+D Y + +N++ V+T LIDMYAKCGS+D A F+ K+ V +AM
Sbjct: 343 ALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMIS 402
Query: 365 GYGLHGLGEEGWVLFHHIRKH--------------------------------------G 386
HG +E LF + K G
Sbjct: 403 ALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFG 462
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+ P+ +H++ +VDLLARAG+ + A+ FI MP + V ALL A
Sbjct: 463 LVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGA 508
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 166/413 (40%), Gaps = 94/413 (22%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-------------------LVC-- 44
+ PN T P V AC L L G H + G L C
Sbjct: 122 IRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCAR 181
Query: 45 YLFDGLFDRTIV-FLDLYHLWSRTEWS--AFGSF----DGLLSNEENEYGTALDCSCDLE 97
+FD + ++ +V + + +SR ++ A G F D +E + L DL
Sbjct: 182 RVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLG 241
Query: 98 FLEQGKIVHGFMIKLGLELES---DLLISLTAVC------------RYQPNVTLRNAMIS 142
L G + GF+++ ++L S LI + C + +V NAMI+
Sbjct: 242 DLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMIT 301
Query: 143 GYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRN 172
GYA+NG ++EA+ LF KW+D Y + +N
Sbjct: 302 GYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQN 361
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS- 231
++ V+T LIDMYAKCGS+D A F+ K+ V +AMI H G LS
Sbjct: 362 DIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFH-----GRPQESLSL 416
Query: 232 -NEENEYGTALDCSCDLEFLEQ-GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
++ G A+ + D+ F+ VH ++ G +L DL+ S + P + +
Sbjct: 417 FKRMSKEGGAVRPN-DISFIGVLSACVHAGLVDEGRQL-FDLMSSSFGLV---PKIEHHS 471
Query: 290 AMISGYAKNGYAEEA---VKLFPKWMDYYI-----GKSEYRNNVIVNTVLIDM 334
M+ A+ G+ EA ++ P+ D + G + R NV V+ ++ M
Sbjct: 472 CMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHM 524
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 120/463 (25%), Positives = 184/463 (39%), Gaps = 139/463 (30%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCRYQPNVTLR----- 137
CS + L G ++HG + G + SL A + R NV L+
Sbjct: 194 CSV-MSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVS 252
Query: 138 -NAMISGYAKNGYAEEAVKLFPKWMDY------------------------------YIG 166
N MISG+ +NG EEA+ +F MD +
Sbjct: 253 WNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQ 312
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG 224
K+ + + V L+DMY++CG +D A + F T +KDV+ ++MI GY ++ SA
Sbjct: 313 KNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALA 372
Query: 225 -----SFDGLLSNEENEYGTALDCS--CDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
DG++ N C+ C + + + + + F + + T+
Sbjct: 373 LCPAMQLDGVVPNAVTLASLLSACASLCYM-YAKCNAVSYSFQV-----------FAKTS 420
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLF-------------------PKW------- 311
R P WNA++SG N A EAV LF P +
Sbjct: 421 KKRTVP----WNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLK 476
Query: 312 ----MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR--TLDKDVVMRSAMTVG 365
+ Y+ +S + + + V T LIDMY+KCGS+D A FD +KD+++ S + G
Sbjct: 477 QVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAG 536
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRH---------------------------------- 391
YG+HG GE +LF+ + G++P
Sbjct: 537 YGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSP 596
Query: 392 --QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
HY VVDLL RAG + A+ I +MP + S+ ALL A
Sbjct: 597 LPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGA 639
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 112/276 (40%), Gaps = 54/276 (19%)
Query: 184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSN-----EEN 235
YA CG V LA FD D + + +A+I Y G H + A FD ++ + ++
Sbjct: 127 YAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFH-FDALRVFDSMICSGKFWPDKY 185
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCRYQPNVT 286
+ + + L G ++HG + G + SL A + R NV
Sbjct: 186 TFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVM 245
Query: 287 L------WNAMISGYAKNGYAEEAVKLFPKWMDY-------------------------- 314
L WN MISG+ +NG EEA+ +F MD
Sbjct: 246 LKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGI 305
Query: 315 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ K+ + + V L+DMY++CG +D A + F T +KDV+ ++M GY ++G
Sbjct: 306 KVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNG 365
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
+ L ++ G+ P A ++ A Y
Sbjct: 366 NAKSALALCPAMQLDGVVPNAVTLASLLSACASLCY 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 99/261 (37%), Gaps = 71/261 (27%)
Query: 250 LEQGKIVHGFMIKLGL-------ELESDLLISLTAVC------------RYQPNVTLWNA 290
L + KI+HG I GL L S L +S A C P++ LWNA
Sbjct: 95 LNKTKILHGHTITSGLLHSPNFIHLPSHLAVSY-AFCGCVPLARKLFDDLSDPSLFLWNA 153
Query: 291 MISGYAKNGYAEEAVKLFPK-------WMDYYI---------------------GK---S 319
+I Y G+ +A+++F W D Y G+ S
Sbjct: 154 IIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVS 213
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+ +N+ V L+ MY CG V LA F+ L + VV + M G+ +G EE +F
Sbjct: 214 GFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVF 273
Query: 380 HHIRKHGIEPRHQHYARVVDLLARAGYSNH------AFKFIMNMPIELRLSVRRALLSAW 433
+ + +EP A +V L GY K + ++ ++ VR AL+
Sbjct: 274 NSMMDARVEPDS---ATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALV--- 327
Query: 434 KIPMQQWENMLQTIRGIDEGE 454
+M GIDE
Sbjct: 328 --------DMYSRCGGIDEAS 340
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 123/515 (23%), Positives = 199/515 (38%), Gaps = 125/515 (24%)
Query: 14 PLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTI----VFLDLYHLWSRTEW 69
P VLKAC + +G +HG + G DR + + +Y + E+
Sbjct: 98 PSVLKACGQVSWTQLGKEIHGFVLKKGL----------DRDVFVGNALMLMYGECACVEY 147
Query: 70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 129
+ FD ++ + + T + L E D+ + L
Sbjct: 148 ARL-VFDKMMERDVVSWSTMIR-------------------SLSRNKEFDMALELIREMN 187
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKC 187
+ AM+S N +A+ A K M Y+ ++ + V T L+DMYAKC
Sbjct: 188 FMQVRPSEVAMVS--MVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 245
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYG---TALDCS 244
G + LA F+ K VV +AMI G G+ + EEN + T L
Sbjct: 246 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 305
Query: 245 CDLEF---LEQGKIVHGFMIKLGLELESDL---LISLTAVCR------------YQPNVT 286
+ F L+ GK +H ++++ G + L L+ + C +V
Sbjct: 306 VECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVM 365
Query: 287 LWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYI 316
+W AM+S YA+ ++A LF KW+ YI
Sbjct: 366 IWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYI 425
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
K + I+NT L+DMYAKCG ++ A F + +D+ M +A+ G+ +HG GEE
Sbjct: 426 DKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEAL 485
Query: 377 VLFHHIRKHGIEPRH------------------------------------QHYARVVDL 400
+F + + G++P +HY +VDL
Sbjct: 486 DIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDL 545
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L RAG + A + I +MPI+ V AL++A ++
Sbjct: 546 LGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRL 580
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 147/591 (24%), Positives = 239/591 (40%), Gaps = 166/591 (28%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY-----------L 46
P+ T P V+K+C AL ++ +G VH +LG + Y +
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203
Query: 47 FDGLFDRTIVFLDLY---HLWSRTEWSAFGSF-DGLLSNEENEYGTALDCSCDLEFLEQ- 101
FDG+ +R V ++ ++ + + SA F D S E + T L C + E
Sbjct: 204 FDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFAT-LACFLSVSATESD 262
Query: 102 ---GKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
G +H +K GLE E ++ L+S+ A C+ + ++ N MISG
Sbjct: 263 LFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISG 322
Query: 144 YAKNGYAEEA-------------------VKLFPKWMDY-----------YIGKSEYRNN 173
+NG+ ++A V L P D YI ++ +
Sbjct: 323 CVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMD 382
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLS 231
V + + L+D+Y KC +V +A +D + DVV+ S MI GY L+ S A F LL
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442
Query: 232 N--EENEYGTA--LDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLTAVC---- 279
N A L + ++ G+ +H + +K E +ES L+ + A C
Sbjct: 443 QGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALM-DMYAKCGRLD 501
Query: 280 ---------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------KWMDYYIG------ 317
+ VT WN+MIS +A+NG EEA+ LF K+ + I
Sbjct: 502 LSHYIFSKISAKDEVT-WNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560
Query: 318 -----------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
K R ++ + LIDMY KCG+++ A F+ +K+ V +
Sbjct: 561 ASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWN 620
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------------- 386
++ YG +GL +E L H+++ G
Sbjct: 621 SIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE 680
Query: 387 --IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I PR +H+A +VDL +RAG + A + I++MP + + ALL A ++
Sbjct: 681 YQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRV 731
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/306 (19%), Positives = 118/306 (38%), Gaps = 43/306 (14%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-VCYLFDGLFDRTIVFLDLYHLW 64
+ PN VL AC ++ ++ +G +H + CY+ L +D+Y
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESAL-------MDMYAKC 497
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
R + S + F + + +E + + + E+ + M G++ + + S+
Sbjct: 498 GRLDLSHY-IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSV 556
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
+ C P + + K + + K R ++ + LIDMY
Sbjct: 557 LSACASLPAI---------------------YYGKEIHGVVIKGPIRADLFAESALIDMY 595
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALD 242
KCG+++ A F+ +K+ V +++I YG A+G +S E G D
Sbjct: 596 GKCGNLEWAHRVFESMPEKNEVSWNSIIASYG-----AYGLVKESVSLLRHMQEEGFKAD 650
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
L + H ++ GL L +T + P + + M+ Y++ G +
Sbjct: 651 HVTFLALVS--ACAHAGQVQEGLR----LFRCMTEEYQIAPRMEHFACMVDLYSRAGKLD 704
Query: 303 EAVKLF 308
+A++L
Sbjct: 705 KAMELI 710
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 147/591 (24%), Positives = 239/591 (40%), Gaps = 166/591 (28%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY-----------L 46
P+ T P V+K+C AL ++ +G VH +LG + Y +
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203
Query: 47 FDGLFDRTIVFLDLY---HLWSRTEWSAFGSF-DGLLSNEENEYGTALDCSCDLEFLEQ- 101
FDG+ +R V ++ ++ + + SA F D S E + T L C + E
Sbjct: 204 FDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFAT-LACFLSVSATESD 262
Query: 102 ---GKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
G +H +K GLE E ++ L+S+ A C+ + ++ N MISG
Sbjct: 263 LFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISG 322
Query: 144 YAKNGYAEEA-------------------VKLFPKWMDY-----------YIGKSEYRNN 173
+NG+ ++A V L P D YI ++ +
Sbjct: 323 CVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMD 382
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLS 231
V + + L+D+Y KC +V +A +D + DVV+ S MI GY L+ S A F LL
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442
Query: 232 N--EENEYGTA--LDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLTAVC---- 279
N A L + ++ G+ +H + +K E +ES L+ + A C
Sbjct: 443 QGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALM-DMYAKCGRLD 501
Query: 280 ---------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------KWMDYYIG------ 317
+ VT WN+MIS +A+NG EEA+ LF K+ + I
Sbjct: 502 LSHYIFSKISAKDEVT-WNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560
Query: 318 -----------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
K R ++ + LIDMY KCG+++ A F+ +K+ V +
Sbjct: 561 ASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWN 620
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------------- 386
++ YG +GL +E L H+++ G
Sbjct: 621 SIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE 680
Query: 387 --IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I PR +H+A +VDL +RAG + A + I++MP + + ALL A ++
Sbjct: 681 YQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRV 731
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 59/306 (19%), Positives = 118/306 (38%), Gaps = 43/306 (14%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-VCYLFDGLFDRTIVFLDLYHLW 64
+ PN VL AC ++ ++ +G +H + CY+ L +D+Y
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESAL-------MDMYAKC 497
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
R + S + F + + +E + + + E+ + M G++ + + S+
Sbjct: 498 GRLDLSHY-IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSV 556
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
+ C P + + K + + K R ++ + LIDMY
Sbjct: 557 LSACASLPAI---------------------YYGKEIHGVVIKGPIRADLFAESALIDMY 595
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALD 242
KCG+++ A F+ +K+ V +++I YG A+G +S E G D
Sbjct: 596 GKCGNLEWAHRVFESMPEKNEVSWNSIIASYG-----AYGLVKESVSLLRHMQEEGFKAD 650
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
L + H ++ GL L +T + P + + M+ Y++ G +
Sbjct: 651 HVTFLALVS--ACAHAGQVQEGLR----LFRCMTEEYQIAPRMEHFACMVDLYSRAGKLD 704
Query: 303 EAVKLF 308
+A++L
Sbjct: 705 KAMELI 710
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 103/423 (24%), Positives = 176/423 (41%), Gaps = 119/423 (28%)
Query: 132 PNVTLR--NAMISGYAKNGYAEEAVKLFPKWMDYYIG----------------------- 166
PN L+ NA+I GYA++ EA+ +F +G
Sbjct: 274 PNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGL 333
Query: 167 -------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GL 217
KS ++N+ V ++DMY KCG++ A + F+ + +D V +A+I +
Sbjct: 334 QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNG 393
Query: 218 HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-- 271
+E F +L + +E YG+ L + L G +H +IK + L+S +
Sbjct: 394 NEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGI 453
Query: 272 -LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---- 314
LI + + C + V WNA+ISG++ +EEA K F K ++
Sbjct: 454 ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 513
Query: 315 --------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
I K E +++ +++ L+DMY+KCG++ + F
Sbjct: 514 DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 573
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR------------------------- 383
++ ++D V +AM GY HGLGEE +F +++
Sbjct: 574 EKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVE 633
Query: 384 -----------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+G++P+ +HY+ VVD++ R+G + A + I MP E + R LLS
Sbjct: 634 KGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSX 693
Query: 433 WKI 435
KI
Sbjct: 694 CKI 696
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 156/381 (40%), Gaps = 71/381 (18%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLRN 138
+ + L LE G +HG +K+G + + L+ + A C Q N LR
Sbjct: 157 DRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQ-NDDLRG 215
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFF 197
+ A++L + K+++ +V++ T +DMY KC ++ D + F
Sbjct: 216 GLELFKEMQKAGVGALQLHGHAL-----KTDFGTDVVIGTATLDMYMKCNNLSDCSNQLF 270
Query: 198 DRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-----DGLLSNEENEYGTALDCSC---DL 247
+ + ++ +A+IVGY + A G F GL +E + G C+ DL
Sbjct: 271 NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDL 330
Query: 248 EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL------------WNAMI 292
E L+ VHG +K + ++ ++ + C L WNA+I
Sbjct: 331 EGLQ----VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAII 386
Query: 293 SGYAKNGYAEEAVKLFPKWM-------DYYIGKS---------------EYRNNVI---- 326
+ + +NG E+ + LF WM D + S E N +I
Sbjct: 387 AAHEQNGNEEKTLSLFV-WMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRM 445
Query: 327 -----VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
V LIDMY+KCG ++ A DR ++ VV +A+ G+ L EE F
Sbjct: 446 GLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSK 505
Query: 382 IRKHGIEPRHQHYARVVDLLA 402
+ + G++P + YA ++D A
Sbjct: 506 MLEMGVDPDNFTYATILDTCA 526
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 101/256 (39%), Gaps = 53/256 (20%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-----EWSA 222
+E++ V V LI MY KC + A FD +D V +AM+ GY
Sbjct: 71 TEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKL 130
Query: 223 FGSFDG-------LLSNEENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGL 265
F + G L GT D CS LE G +HG +K+G
Sbjct: 131 FDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCS-SLEDHGGGIQIHGLAVKMGF 189
Query: 266 ELESDLLISLTAVCRYQPNVTLWNAMISGYAK----NGYAEEAVKLFPKWMDYYIG---- 317
+ + V +A++ YAK N ++LF + +G
Sbjct: 190 DCD----------------VVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQL 233
Query: 318 -----KSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
K+++ +V++ T +DMY KC ++ D + F+ + ++ +A+ VGY
Sbjct: 234 HGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDK 293
Query: 372 GEEGWVLFHHIRKHGI 387
G E +F ++K G+
Sbjct: 294 GIEALGMFRLLQKSGL 309
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 47/195 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSL-----GFLVCYLFD-----GLFDRTIVF 57
P+ T VLKAC +L G +H +I F+ L D G+ ++
Sbjct: 412 PDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKL 471
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEEN------------------EYGTALDCSCDLEFL 99
D + W+A S L E Y T LD +L +
Sbjct: 472 HDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTV 531
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNVTLR--NAMIS 142
E GK +H +IK EL+SD IS T V Y PN NAM+
Sbjct: 532 ELGKQIHAQIIKK--ELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVC 589
Query: 143 GYAKNGYAEEAVKLF 157
GYA++G EEA+K+F
Sbjct: 590 GYAQHGLGEEALKIF 604
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 168/412 (40%), Gaps = 117/412 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW------MDYYIGKSEYRNNVIVNTV------------ 179
AM+S Y++N E +++F K ++ + S R V +++V
Sbjct: 601 TAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVK 660
Query: 180 ------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGS 225
L+DMYAKCG+++ A + F+ + DV++ S MI Y AF
Sbjct: 661 TLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFEL 720
Query: 226 FDGLL--SNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
F ++ S NE+ + L ++ L+ GK +H IK+G E E + LI L A
Sbjct: 721 FIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAK 780
Query: 279 CR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF--------PKWMDYY--- 315
C N WN +I GY+K+G+ E A+ +F P Y
Sbjct: 781 CSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSV 840
Query: 316 -------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
I KS + ++ IV+ LID YAKCG + A F+ + D+
Sbjct: 841 LRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDL 900
Query: 357 VMRSAMTVGYGLHG-----------------------------------LGEEGWVLFHH 381
V +A+ GY +HG L +G LF
Sbjct: 901 VSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDS 960
Query: 382 IR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+R HGIEP +HY +V LL RAG N A FI ++P V RALLS+
Sbjct: 961 MRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSS 1012
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 112/292 (38%), Gaps = 53/292 (18%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-----WSAFG 224
+ N V + LID Y+ CG V A FD + KD V +AM+ Y ++ F
Sbjct: 562 HDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFS 621
Query: 225 SFDGLLSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC 279
+S + N + + L + L + GK +H +K + E + L+ + A C
Sbjct: 622 KMRVAVS-KLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKC 680
Query: 280 R------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------ 321
+V LW+ MIS YA+ E+A +LF + M + +E+
Sbjct: 681 GNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVL 740
Query: 322 ------------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+ + V LID+YAKC ++ + F D + V
Sbjct: 741 QACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEV 800
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409
+ + VGY G GE +F +R + Y+ V+ A NH
Sbjct: 801 SWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINH 852
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 141/592 (23%), Positives = 226/592 (38%), Gaps = 160/592 (27%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL--------------------- 42
A V+P+ T P V+KAC L S+ MG VH + +G
Sbjct: 52 AGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSD 111
Query: 43 VCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCS---CDL 96
YLFD + + V ++ ++ + +A F + +E C C
Sbjct: 112 AQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCAS 171
Query: 97 E-FLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLRNAM 140
E L+ G +HG + GLEL+S + L+++ + C+ Q ++ N +
Sbjct: 172 EAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGI 231
Query: 141 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEY 170
ISGY +NG EA LF K + YI +
Sbjct: 232 ISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAV 291
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDG 228
+V + + LID+Y KC V++A ++ D V+ + MI GY L+ A +F
Sbjct: 292 VLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRW 351
Query: 229 LLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS---------- 274
L+ + + L L GK +HG +IK L+ + + +
Sbjct: 352 LVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGR 411
Query: 275 LTAVCRYQPNVT-----LWNAMISGYAKNGYAEEAVKLFP-------------------- 309
L CR +T WN+MI+ ++NG EA+ LF
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K + + K R+++ + LIDMYAKCG+++ + FDR +++ V
Sbjct: 472 CANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSW 531
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------------------ 389
+++ YG HG +E LFH + ++GI+P
Sbjct: 532 NSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTE 591
Query: 390 ------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R +HYA V D+ RAG + AF+ I +MP V LL A I
Sbjct: 592 EYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHI 643
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 152/357 (42%), Gaps = 85/357 (23%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWS 221
+I S + +++++ +++MYAKCGS++ A FD+ KD+V + +I GY
Sbjct: 130 HIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASE 189
Query: 222 AFGSFDGLL--SNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A F +L + NE+ + L S G+ +H F +K G ++ + SL
Sbjct: 190 ALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLD 249
Query: 278 V-CRYQ--------------PNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
+ R+ NV WNA+I+G+A+ G E ++LF
Sbjct: 250 MYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFT 309
Query: 310 ----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
KW+ ++ KS + + LIDMYAK GS+ A F R +
Sbjct: 310 YSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVK 369
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------------------- 382
+D+V +++ GY HGLG E LF +
Sbjct: 370 QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYY 429
Query: 383 ----RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+KH IE + H+ VVDLL RAG N A KFI MPI+ +V ALL A ++
Sbjct: 430 FELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRM 486
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 45/216 (20%)
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL---ISLTAVCRY--- 281
G L E Y L+ L L+QG+ +H + E + LL +++ A C
Sbjct: 99 GSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEE 158
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------ 320
++ W +ISGY+++G A EA+ LFPK + +E
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT 218
Query: 321 ------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y NV V + L+DMYA+ + A + F+ K+VV +A+
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNAL 278
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
G+ G GE LF + + G EP H Y+ V+
Sbjct: 279 IAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL 314
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 29/115 (25%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFP-----------------------------KWMDY 163
NV NA+I+G+A+ G E ++LF KW+
Sbjct: 271 NVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSLEQGKWVHA 330
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
++ KS + + LIDMYAK GS+ A F R + +D+V +++I GY H
Sbjct: 331 HVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH 385
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/501 (24%), Positives = 192/501 (38%), Gaps = 136/501 (27%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 130
L + Y A+ + G+++HG + G + S+LL+ V Y
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCD--SELLLGSNIVKMYFKFWRVED 172
Query: 131 ---------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK-------------- 167
+ + L N MISGY KN E++++F ++ +
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232
Query: 168 --SEYRNNVIVNTV---------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
E R + ++++ I +Y+KCG + + F D+V +A
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNA 292
Query: 211 MIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
MI GY G E S + +LS T + L +HG+ +K
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLS 352
Query: 268 ESDLLISLTAVCRY-------------QPNVTL--WNAMISGYAKNGYAEEAVKLFP--- 309
+ + +LT V P +L WNAMISGY +NG E+A+ LF
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412
Query: 310 ---------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
KW+ + +++ +++ V+T LI MYAKCGS+
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIA 472
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH--------------------- 381
A FD K+ V + M GYGLHG G+E +F+
Sbjct: 473 EARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532
Query: 382 ---------------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
I ++G EP +HYA +VD+L RAG+ A +FI M IE SV
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVW 592
Query: 427 RALLSAWKIPMQQWENMLQTI 447
LL A +I + N+ +T+
Sbjct: 593 ETLLGACRI--HKDTNLARTV 611
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 121/497 (24%), Positives = 192/497 (38%), Gaps = 162/497 (32%)
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYA 145
+G VHG ++K+GLE + + LI A C + + NV ++I GYA
Sbjct: 149 EGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYA 208
Query: 146 KNGYAEEAVKLFPKWMDY------------------------------YIGKSEYRNNVI 175
+ +EAV LF + ++ YIG+ + N +
Sbjct: 209 RGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKV 268
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN- 232
+ L+DMY KCG++D A FD +D+++V+ + ++ Y + A D +L
Sbjct: 269 MVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQG 328
Query: 233 ---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----------------------- 266
+ +A+ S L L GK+ HG++I+ GLE
Sbjct: 329 PRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMAC 388
Query: 267 ----LESDLLI----SLTA-------------VCRYQP--NVTLWNAMISGYAKNGYAEE 303
L S+ + SLTA V P N WN MISG + E+
Sbjct: 389 RVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFED 448
Query: 304 AVKLF------------------------------PKWMDYYIGKSEYRNNVIVNTVLID 333
A++LF KW+ YI K+ ++ +NT L+D
Sbjct: 449 AIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVD 508
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE-------------------- 373
M+A+CG A F++ ++DV +A + G GE
Sbjct: 509 MFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVL 568
Query: 374 ---------------EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+G +F + HGI P+ +HY +VDLL RAG AF I +MP
Sbjct: 569 FVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMP 628
Query: 419 IELRLSVRRALLSAWKI 435
+E V +LL+A ++
Sbjct: 629 MEPNDVVWGSLLAACRV 645
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 131/326 (40%), Gaps = 81/326 (24%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------------------------- 170
N++I GY+ G EA+ L+ + + + + Y
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159
Query: 171 ---RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGS 225
+V + LI YA+CG +D F+ +++VV +++I GY G A
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219
Query: 226 FDGLLSNEENEYGTALDC---SC-DLEFLEQGKIVHGFMIKLGLELES---DLLISLTAV 278
F ++ + C +C L L+ G+ V ++ +LGL+L + L+ +
Sbjct: 220 FFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMK 279
Query: 279 CR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF------------------ 308
C N+ L+N ++S YA+ G A EA+ +
Sbjct: 280 CGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSA 339
Query: 309 ----PKWMDYYIGKSEY----RNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+ +D + GK + RN + + V+IDMY KCG ++A FD +K V
Sbjct: 340 ISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTV 399
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHI 382
V +++T G+ +G E W +F+ I
Sbjct: 400 VSWNSLTAGFIRNGDVESAWEVFNQI 425
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 30/147 (20%)
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------------------- 321
+ N++I GY+ G EA+ L+ + + + + Y
Sbjct: 98 MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157
Query: 322 -----RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
+V + LI YA+CG +D F+ +++VV +++ GY +E
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLAR 403
LF + + GI P V+ A+
Sbjct: 218 SLFFEMVEAGIRPSSVTMVCVISACAK 244
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 139/600 (23%), Positives = 235/600 (39%), Gaps = 170/600 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV------CYL-------- 46
MQ +AP+ T L +C + +L G +H Q G L C L
Sbjct: 117 MQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGS 176
Query: 47 -------FDGLFDRTIVFLDL----YHLWSRTEWSAFGSF-----DGLLSNEENEYGTAL 90
FD + +++V + Y R+E +AF F +G++ N Y + L
Sbjct: 177 IEEAREVFDKMEKKSVVSWTITIGGYADCGRSE-TAFEIFQKMEQEGVVPNRIT-YISVL 234
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---------CRY------QPNVT 135
+ L+ GK VH ++ G E ++ + +L + CR ++
Sbjct: 235 NAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 294
Query: 136 LRNAMISGYAKNGYAEEAVKLF---------PKWMDYYI--------------------- 165
N MI G A+ GY EEA +++ P + Y I
Sbjct: 295 AWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRV 354
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
K+ + +++ V LI MY++CGS+ A + FD+ + KDV+ +AMI G S FG+
Sbjct: 355 AKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAK---SGFGA 411
Query: 226 FDGLLSNEENE---------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLI 273
+ E + Y + L+ LE G+ +H +++ GL ++ + L+
Sbjct: 412 EALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLV 471
Query: 274 SLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWM 312
++ ++C Q ++ +NAMI GYA + +EA+KLF P +
Sbjct: 472 NMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 531
Query: 313 DYY---------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
Y + K + ++ V L+ YAKCGS A + F++
Sbjct: 532 TYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM 591
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------RH-------- 391
++V+ +A+ G HG G++ LF ++ G++P H
Sbjct: 592 TKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGR 651
Query: 392 ----------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDLL RAG + A I MP + + ALL A +I
Sbjct: 652 RYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRI 711
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 148/345 (42%), Gaps = 85/345 (24%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYI-----------------GKSEYRN-------- 172
NAM+ GY + GY E+A+KL + + + G E+
Sbjct: 95 NAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQ 154
Query: 173 -----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFG 224
+V V +++MYAKCGS++ A FD+ K VV + I GY G E +AF
Sbjct: 155 AGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSE-TAFE 213
Query: 225 SF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV- 278
F +G++ N Y + L+ L+ GK VH ++ G E ++ + +L +
Sbjct: 214 IFQKMEQEGVVPNRIT-YISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMY 272
Query: 279 --------CRY------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY 315
CR ++ WN MI G A+ GY EEA +++ P + Y
Sbjct: 273 AKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYV 332
Query: 316 I---------------------GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
I K+ + +++ V LI MY++CGS+ A + FD+ + K
Sbjct: 333 ILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRK 392
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
DV+ +AM G G G E ++ +++ G+EP Y +++
Sbjct: 393 DVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 63/275 (22%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRT--LDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NE 233
LI+MY +CGS++ A + + +++ V +AM+VGY +G + L +
Sbjct: 62 NALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGY-----IQYGYIEKALKLLRQ 116
Query: 234 ENEYGTALDCSCDLEF---------LEQGKIVHGFMIKLGLELE---SDLLISLTAVC-- 279
++G A D + + F LE G+ +H ++ GL + ++ ++++ A C
Sbjct: 117 MQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGS 176
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+ +V W I GYA G +E A ++F
Sbjct: 177 IEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNA 236
Query: 310 -------KW---MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
KW + I + + ++ V T L+ MYAKCGS F++ +++D++
Sbjct: 237 FSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 296
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
+ M G G EE +++ +++ G+ P Y
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITY 331
>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
Length = 657
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 139/332 (41%), Gaps = 91/332 (27%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNE 233
V T L+ +Y+KCG +D A FDR D D+V +A+I GY ++ S+ F L +++
Sbjct: 249 VVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASD 308
Query: 234 ENEYGTALDCSCDL------EFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQ---- 282
+ L + E L + +H F++K L+ ++ + +LT + CR
Sbjct: 309 WRPNSSTLVAVIPVYSPFGHELL--ARCLHAFVVKARLDADALVSTALTTLYCRLNDMES 366
Query: 283 --------PNVTL--WNAMISGYAKNGYAEEAVKLFP----------------------- 309
P T+ WNAMISGYA+NG E AV+LF
Sbjct: 367 ARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQ 426
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
W+ I K NV V T LIDMYAKCGS+ A FDR +K+VV +AM
Sbjct: 427 LGALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAM 486
Query: 363 TVGYGLHGLGEEGWVLFHHIR------------------KHG------------------ 386
GYGLHG G E L+ + HG
Sbjct: 487 ISGYGLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYR 546
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
I P +H +VDLL RAG N A I P
Sbjct: 547 ISPGIEHCTCMVDLLGRAGKLNEALDLISEFP 578
>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 846
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 143/595 (24%), Positives = 227/595 (38%), Gaps = 170/595 (28%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------LVC--- 44
V+P+ T P V+KAC L ++ + VH SLGF +C
Sbjct: 141 VSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDAR 200
Query: 45 YLFDGLFDR-TIVFLDLYHLWSRTE--WSAFGSFDGLLSN----EENEYGTALDCSCDLE 97
+FD L R TI++ + H + ++ +A G+F G+ ++ Y L
Sbjct: 201 RVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRG 260
Query: 98 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMIS 142
G VHG +I G E + ++ L+++ + C Q + N +I+
Sbjct: 261 KFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIA 320
Query: 143 GYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRN 172
GY +NG+ +EA LF K + YI +
Sbjct: 321 GYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPF 380
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSF---- 226
+V + + LID+Y K G V++A F + DV + +AMI GY LH A +F
Sbjct: 381 DVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLI 440
Query: 227 -DGLLSNE--------------ENEYGTALDCSCDLEFLEQ----GKIVHGFMIKLG-LE 266
+G++ N + G L C + LE G + K G L+
Sbjct: 441 QEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLD 500
Query: 267 LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------- 309
L + ++ + + WN+MIS +++NG E AV LF
Sbjct: 501 LAYEFFRRMS-----ETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSA 555
Query: 310 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
K M Y+ ++ + ++ V + LIDMY+KCG + LA F+ K+
Sbjct: 556 LSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNE 615
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------- 391
V +++ YG HG E LFH + + G+ P H
Sbjct: 616 VSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHC 675
Query: 392 -----------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDL RAG + AF I +MP V LL A ++
Sbjct: 676 MTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRL 730
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 134/504 (26%), Positives = 193/504 (38%), Gaps = 120/504 (23%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
VLKAC + G +VH QI G ++F GL +D+Y E S
Sbjct: 109 VLKACSESRNFDEGRKVHCQIVKFGNPDSFVFTGL-------VDMYAKCGEIECSR---- 157
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
+ D + D ++ G++ L D L+ R + +
Sbjct: 158 ------------SVFDENLDRNVFSWSSMIAGYVQN---NLAQDGLVLFN---RMREELI 199
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
N + G + + KW+ Y+ K + T L+D+YAKCG V A
Sbjct: 200 EANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARS 259
Query: 196 FFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSF-----DGLLSNEENEYGTALDCSCDL 247
FD D+V +AMIVGY G E A F +L N+ CS L
Sbjct: 260 VFDELHGIDIVSWTAMIVGYTQNGCPE-EALKLFLQKEQVAVLPNDVTIASVFSSCS-QL 317
Query: 248 EFLEQGKIVHGFMIKLGLE--LESDLLISLTAVC------RY------QPNVTLWNAMIS 293
L G+ +HG IKLG + ++ L+ A C RY +V WN++IS
Sbjct: 318 LNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIIS 377
Query: 294 GYAKNGYAEEAVKLFPK-------------------------------WMDYYIGKSEYR 322
+++NG A EA++LF + + Y + +
Sbjct: 378 AFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLS 437
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE--------- 373
+NV V T L+ YAKCG + A + FD K V SAM GYG+ G G
Sbjct: 438 SNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDM 497
Query: 374 --------------------------EGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGY 406
EGW LF I + + + P +HY +VDLLARAG
Sbjct: 498 LKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGR 557
Query: 407 SNHAFKFIMNMPIELRLSVRRALL 430
A FI MP++ +S+ A L
Sbjct: 558 LKEALDFIQKMPVQPDVSLFGAFL 581
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 138/313 (44%), Gaps = 69/313 (22%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF------DGL 229
V T L+DMYAKCG ++ + FD LD++V S+MI GY + + G + L
Sbjct: 139 VFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREEL 198
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------- 279
+ + G + L L QGK +HG++IK G+EL S L L+ L A C
Sbjct: 199 IEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDAR 258
Query: 280 -----RYQPNVTLWNAMISGYAKNGYAEEAVKLF----------------------PKWM 312
+ ++ W AMI GY +NG EEA+KLF + +
Sbjct: 259 SVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLL 318
Query: 313 DYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ +G+S + R+ ++ N+ L+D YAKC A F+ D+DVV +++
Sbjct: 319 NLNLGRSIHGLSIKLGSRDPIVTNS-LVDFYAKCQMNRDARYVFETISDRDVVAWNSIIS 377
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPI 419
+ +G E LFH +R + P V+ A + G S HA+
Sbjct: 378 AFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAY-------- 429
Query: 420 ELRLSVRRALLSA 432
+V+R LLS+
Sbjct: 430 ----AVKRGLLSS 438
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 107/452 (23%), Positives = 164/452 (36%), Gaps = 130/452 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GL 50
M+ + N T +++ AC L +L G +HG + G +LV L D G+
Sbjct: 194 MREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGV 253
Query: 51 FDRTIVFLDLYHLWSRTEWSAF-------GSFD------------GLLSNEENEYGTALD 91
D H W+A G + +L N+
Sbjct: 254 VRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSS 313
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVC------RY------QPNVTLR 137
CS L L G+ +HG IKLG + ++ L+ A C RY +V
Sbjct: 314 CS-QLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAW 372
Query: 138 NAMISGYAKNGYAEEAVKLFPK-------------------------------WMDYYIG 166
N++IS +++NG A EA++LF + + Y +
Sbjct: 373 NSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVK 432
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
+ +NV V T L+ YAKCG + A + FD K V SAMI GYG+ G+
Sbjct: 433 RGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQ-----GNG 487
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
G LS + G M+K L +PN
Sbjct: 488 RGSLS------------------------IFGDMLKAEL----------------KPNEE 507
Query: 287 LWNAMISGYAKNGYAEEAVKLFPK-WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
++ +++S + G E +LF DY + S T ++D+ A+ G + A
Sbjct: 508 IFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKH-----YTCMVDLLARAGRLKEAL 562
Query: 346 MFFDRT-LDKDVVMRSAMTVGYGLHG---LGE 373
F + + DV + A G GLH LGE
Sbjct: 563 DFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGE 594
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 136/531 (25%), Positives = 204/531 (38%), Gaps = 143/531 (26%)
Query: 46 LFDGLFDR-TIVFLDLYHLWSRTEWSAFGSFDGLLSNEENE--------YGTALDCSCDL 96
LFD + DR T+ F+ L +S+ F GL S + E + T L
Sbjct: 101 LFDEMPDRNTVSFVTLIQGYSQC--LRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSA 158
Query: 97 EFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRYQ------------PNVTLRNAMI 141
E+ + G VH + KLG + ++ LI +VC Y ++ M+
Sbjct: 159 EWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMV 218
Query: 142 SGYAKNGYAEEAVKLFPKW---------------MDYYIG---------------KSEYR 171
+ Y +N EE++KLF + + +G K+ Y
Sbjct: 219 ACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYL 278
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF--- 226
+ V LID+Y K G VD A F+ DV+ S MI Y E S A F
Sbjct: 279 EELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRM 338
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC--- 279
GL+ + + L L L+ G +H ++K+GL++ S+ L+ + A C
Sbjct: 339 RRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRM 398
Query: 280 -------RYQPNVT--LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE---------- 320
PN T WN +I GY + G E+A+ LF ++ + +E
Sbjct: 399 ENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRAC 458
Query: 321 --------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
Y N +V LIDMYAKCG++ A + FD + D V +
Sbjct: 459 AGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWN 518
Query: 361 AMTVGYGLHGLGEEGWVLFHH------------------------------------IRK 384
AM GY +HGL E F + +
Sbjct: 519 AMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEE 578
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ IEP +HY +V LL R+G+ + A K + +P E + V RALLSA I
Sbjct: 579 YDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVI 629
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 127/333 (38%), Gaps = 67/333 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
++ N +L++ Y K S+ A FD D++ V +I GY + F GL S
Sbjct: 78 DLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYS--QCLRFSEAIGLFSR 135
Query: 233 EENE--------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY 281
+ E + T L E+ + G VH + KLG + ++ LI +VC Y
Sbjct: 136 LQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGY 195
Query: 282 Q------------PNVTLWNAMISGYAKNGYAEEAVKLFPKW---------------MDY 314
++ W M++ Y +N EE++KLF + +
Sbjct: 196 AECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKA 255
Query: 315 YIG---------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+G K+ Y + V LID+Y K G VD A F+ DV+
Sbjct: 256 CVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPW 315
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------QHYARVVDLLARAGYSNHAFK 412
S M Y EE +F +R+ + P Q A +VDL N
Sbjct: 316 SFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDL----QLGNQIHC 371
Query: 413 FIMNMPIELRLSVRRALLSAWKIPMQQWENMLQ 445
++ + +++ + V AL+ + + EN LQ
Sbjct: 372 HVVKVGLDMNVFVSNALMDMYA-KCGRMENSLQ 403
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 134/523 (25%), Positives = 212/523 (40%), Gaps = 128/523 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMG----PRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
V P+ T PLVLKAC +L +L +G +HG+ + ++ C + D +F + D
Sbjct: 129 VTPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCAVID-MFAKCGSVEDAR 187
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
++ S+ L+ GT + C LE L ++ M GL +S ++
Sbjct: 188 RMFEEMPDRDLASWTALIC------GTMWNGEC-LEAL----LLFRKMRSEGLMPDSVIV 236
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
S+ C V L A+ ++G+ +++ V+ +I
Sbjct: 237 ASILPACGRLEAVKLGMALQVCAVRSGF---------------------ESDLYVSNAVI 275
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---LHEWSA---FGSFDGLLSNEEN 235
DMY KCG A F + DVV S +I GY L++ S G + L+
Sbjct: 276 DMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAI 335
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV----------------- 278
+ L LE L+QGK +H F++K GL SD+++ +
Sbjct: 336 VATSVLPALGKLELLKQGKEMHNFVLKEGLM--SDVVVGSALIVMYANCGSIKEAESIFE 393
Query: 279 CRYQPNVTLWNAMISGYAKNGYAEEA-------------------VKLFP---------- 309
C ++ +WN+MI GY G E A V + P
Sbjct: 394 CTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQ 453
Query: 310 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
K + Y+ KS NV V LIDMY+KCG ++L F + + ++V + M G
Sbjct: 454 GKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGS 513
Query: 369 HGLGEEG-----------------------------------WVLFHH-IRKHGIEPRHQ 392
HG GE+G W+L++ I +GIEP +
Sbjct: 514 HGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNME 573
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HY+ +VDL+ RAG + A+KFI MP+ +V +LL A ++
Sbjct: 574 HYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRL 616
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 126/495 (25%), Positives = 196/495 (39%), Gaps = 144/495 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T P V+KA + SLL G +HG +
Sbjct: 129 PNSYTFPFVIKAATEVSSLLAGQAIHGMVMK----------------------------- 159
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
++FGS D +SN ++H F LG +L+S L+ V
Sbjct: 160 --ASFGS-DLFISNS---------------------LIH-FYSSLG-DLDSAYLVFSKIV 193
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK---------------------------- 159
+ ++ N+MISG+ + G EEA++LF +
Sbjct: 194 ---EKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEF 250
Query: 160 --WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG- 216
W YI ++ N+I++ ++DMY KCGS++ A FD+ +KD+V + MI GY
Sbjct: 251 GRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAK 310
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
+ ++ A ++ E+ AL S + + GK I L+L +
Sbjct: 311 VGDYDAARRVFDVMPREDITAWNALISS----YQQNGKPKEALAIFRELQLNKNT----- 361
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+PN + ++ A+ G + W+ YI K + N + T LIDMY+
Sbjct: 362 -----KPNEVTLASTLAACAQLGAMD-----LGGWIHVYIKKQGIKLNFHITTSLIDMYS 411
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------ 372
KCG ++ A F +DV + SAM G +HG G
Sbjct: 412 KCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTN 471
Query: 373 -----------EEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+EG + F+ +R +G+ P +HYA +VD+L RAG A + I MPI
Sbjct: 472 LLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIV 531
Query: 421 LRLSVRRALLSAWKI 435
SV ALL A +I
Sbjct: 532 PSASVWGALLGACRI 546
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 143/591 (24%), Positives = 237/591 (40%), Gaps = 162/591 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY---------- 45
V N T P VLKAC L MG +VHG GF +V Y
Sbjct: 78 VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSR 137
Query: 46 -LFDGLFDRTIVFLD-LYHLWSRTEW--SAFGSFDGLLSNE--ENEYGTA--LDCSCDLE 97
LF G+ +R +V + L+ + ++E A G F ++ + NE+ + L+ L+
Sbjct: 138 RLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQ 197
Query: 98 FLEQGKIVHGFMIKLGLELE---SDLLISL--------TAVCRYQ----PNVTLRNAMIS 142
+ G+ +HG M+K+GL+L+ ++ L+ + AV +Q P+V NA+I+
Sbjct: 198 EGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIA 257
Query: 143 G------------------------------YAKNGYAEEAVKLFPKWMDYYIGKSEYRN 172
G A A K + + + K + +
Sbjct: 258 GCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHS 317
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL 229
++ L+DMY+KC +D A +D KD++ +A+I GY G H A F +
Sbjct: 318 DLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDH-LDAVSLFSKM 376
Query: 230 LSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---C--- 279
S + + T L L+ ++ K +H IK G+ + ++ SL C
Sbjct: 377 FSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHI 436
Query: 280 ---------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD----------------- 313
R ++ + +MI+ Y++ G EEA+KL+ + D
Sbjct: 437 DEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNAC 496
Query: 314 -----YYIGKSEYRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
Y GK + + ++ + L++MYAKCGS++ A F ++ +V S
Sbjct: 497 ANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWS 556
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------------- 391
AM GY HG G+E LF+ + + G+ P H
Sbjct: 557 AMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVM 616
Query: 392 -------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA ++DLL R+G N A + + ++P E V ALL A +I
Sbjct: 617 FGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARI 667
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 161/394 (40%), Gaps = 96/394 (24%)
Query: 105 VHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLRNAMISGYAKNGY 149
+H +IK G + L L++L + CR + +V ++++SGY +NG+
Sbjct: 3 LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62
Query: 150 AEEAVKLFPKWM----------------------DYYIGK--------SEYRNNVIVNTV 179
EEA+ +F + D +G+ + + ++ V
Sbjct: 63 VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNE--EN 235
L+ MYAKCG +D + F ++++VV +A+ Y E A G F ++ + N
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182
Query: 236 EYGTA--LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL--------TAVCRYQ 282
E+ + L+ L+ + G+ +HG M+K+GL+L+ ++ L+ + AV +Q
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242
Query: 283 ----PNVTLWNAMISG------------------------------YAKNGYAEEAVKLF 308
P+V WNA+I+G A A K
Sbjct: 243 DIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKEL 302
Query: 309 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ + + K + +++ L+DMY+KC +D A +D KD++ +A+ GY
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQ 362
Query: 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
G + LF + I+ + V+ +A
Sbjct: 363 CGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVA 396
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 108/282 (38%), Gaps = 59/282 (20%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD-----GLLS 231
L+ +Y+KC A D + + DVV S+++ GY G E A F+ G+
Sbjct: 22 LVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVE-EALLVFNEMCLLGVKC 80
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------- 281
NE CS + L G+ VHG + G E SD ++ T V Y
Sbjct: 81 NEFTFPSVLKACSMKRD-LNMGRKVHGMAVVTGFE--SDGFVANTLVVMYAKCGLLDDSR 137
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT----- 329
+ NV WNA+ S Y ++ EAV LF + + I +E+ ++I+N
Sbjct: 138 RLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQ 197
Query: 330 -------------------------VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
L+DMY+K G ++ A F DVV +A+
Sbjct: 198 EGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIA 257
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
G LH + +L ++ G P + + A G+
Sbjct: 258 GCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299
>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 547
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 198/487 (40%), Gaps = 139/487 (28%)
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-- 120
++ + S+ +FD L+ ++ L QGK +H +I GL ++
Sbjct: 20 IYRSFQSSSLHTFDELIKTYTRDHA-----------LNQGKHLHARLIVSGLASSNNFAS 68
Query: 121 -LISLTAVCRY------------QPNVTLRNAMISGYAKNGYAEEAVKLFP--------- 158
LIS R +PN R +I Y+++G+ ++ + +F
Sbjct: 69 KLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQNERLRP 128
Query: 159 ---------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
K + I + + ++V+VNT LIDMY++C V+ A F
Sbjct: 129 NKFVIPSVLRACGHVFDLQTGKILHSVILRHLFESDVVVNTALIDMYSRCRHVEKARKVF 188
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D +KD+V +AM++GY + ++ +G L E+ + LD +L + ++
Sbjct: 189 DGMQEKDLVALNAMVLGYAQNGFAK----EGFLLVEQMQ---MLDIKPNL--VTWNTLIS 239
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---- 313
GF + G ++ L L ++ ++P+V W ++IS + +N + E A F + +
Sbjct: 240 GFA-QAGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAY 298
Query: 314 -----------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
+ IG E ++ V + ++DMY+KCG + A
Sbjct: 299 PNSATISSLLPACASLANVRHGRELHGYAFAIGVEE---DIYVRSAIVDMYSKCGLISEA 355
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-------------------H 385
M F + ++ V ++M GY HG +E LF+ + K H
Sbjct: 356 RMLFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLTACSH 415
Query: 386 G------------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
G I PR +HYA ++DLL RAG + A+ I MP+E L V
Sbjct: 416 GRLVELGQSLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTMPVEPDLFVWG 475
Query: 428 ALLSAWK 434
ALL A +
Sbjct: 476 ALLGACR 482
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 79/380 (20%), Positives = 140/380 (36%), Gaps = 91/380 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ + PN P VL+AC + L G +H I +LF+ +D+
Sbjct: 121 MQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILR------HLFESDVVVNTALIDM 174
Query: 61 YHLWSRTEWSAFGSFDGL------------LSNEENEYGTA----------LDCSCDLEF 98
Y E A FDG+ L +N + LD +L
Sbjct: 175 YSRCRHVE-KARKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPNL-- 231
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
+ ++ GF + G ++ L L ++ ++P+V ++IS + +N + E A F
Sbjct: 232 VTWNTLISGFA-QAGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFK 290
Query: 159 KWMD---------------------------------YYIGKSEYRNNVIVNTVLIDMYA 185
+ + + IG E ++ V + ++DMY+
Sbjct: 291 QMLQHGAYPNSATISSLLPACASLANVRHGRELHGYAFAIGVEE---DIYVRSAIVDMYS 347
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYG----T 239
KCG + A M F + ++ V ++MI GY H + A F+ + E + T
Sbjct: 348 KCGLISEARMLFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFT 407
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299
A+ +C HG +++LG L + + + P + + MI + G
Sbjct: 408 AVLTACS----------HGRLVELG----QSLFLLMHEKYKIVPRLEHYACMIDLLGRAG 453
Query: 300 YAEEA---VKLFPKWMDYYI 316
EA +K P D ++
Sbjct: 454 KLSEAYDMIKTMPVEPDLFV 473
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 142/592 (23%), Positives = 226/592 (38%), Gaps = 160/592 (27%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL--------------------- 42
A V+P+ T P V+KAC L S+ MG VH + +G
Sbjct: 52 AGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSD 111
Query: 43 VCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCS---CDL 96
YLFD + + V ++ ++ + +A F + +E C C
Sbjct: 112 AQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCAS 171
Query: 97 E-FLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLRNAM 140
E L+ G +HG + GLEL+S + L+++ + C+ Q ++ N +
Sbjct: 172 EAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGI 231
Query: 141 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEY 170
ISGY +NG EA LF K + YI +
Sbjct: 232 ISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAV 291
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDG 228
+V + + LID+Y KC V++A ++ D V+ + MI GY L+ A +F
Sbjct: 292 VLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRW 351
Query: 229 LLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS---------- 274
L+ + + L L GK +HG +IK L+ + + +
Sbjct: 352 LVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGR 411
Query: 275 LTAVCRYQPNVT-----LWNAMISGYAKNGYAEEAVKLFP-------------------- 309
L CR +T WN+MI+ ++NG EA+ LF
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K + + K R+++ + LIDMYAKCG+++ + FDR +K+ V
Sbjct: 472 CANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSW 531
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------------------ 389
+++ YG HG +E LFH + ++GI+P
Sbjct: 532 NSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTE 591
Query: 390 ------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R +HYA V D+ RAG + AF+ I +MP V LL A I
Sbjct: 592 EYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHI 643
>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Brachypodium distachyon]
Length = 678
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 109/426 (25%), Positives = 166/426 (38%), Gaps = 129/426 (30%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------------- 171
NV +M+SG +NG A+E + LF + I SEY
Sbjct: 192 NVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIH 251
Query: 172 ---------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
+N + ++DMY KCG + A FD D+V+ + MIVGY +
Sbjct: 252 GSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGY-----TQ 306
Query: 223 FGS-FDGLLSNEENEY----------GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
GS D LL ++++ T L S L L G+ +HG +KLG +E+D+
Sbjct: 307 NGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLG-AVENDV 365
Query: 272 ----LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP------ 309
L+ + A C+ +V WN++I+GYA+N +A+ LF
Sbjct: 366 VMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQG 425
Query: 310 ------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
K Y K + +N+ VNT L+++Y KC + A
Sbjct: 426 SLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQ 485
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------- 391
F D++ V AM GYG+ G LF+ + K I+P
Sbjct: 486 RVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTG 545
Query: 392 ----------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
+HYA +VD+LARAG A +FI MP++ S+ +A
Sbjct: 546 MVTVGKKCFESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAF 605
Query: 430 LSAWKI 435
L K+
Sbjct: 606 LHGCKL 611
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 55/270 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF------ 226
++ V L+DMYAK G + A FDR D++VV ++M+ G + + G
Sbjct: 161 DLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMR 220
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRYQ 282
+ +L +E + C+ L L QG+++HG ++K GL + ++ + C
Sbjct: 221 QESILPSEYTMASVLMACTM-LGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEA 279
Query: 283 P------------NVTLWNAMISGYAKNGYAEEAVKLF--PKWM---------------- 312
++ LW MI GY +NG +A+ LF K+M
Sbjct: 280 EDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSAS 339
Query: 313 ----DYYIGKSEY---------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ +G+S + N+V++N L+DMYAKC ++ A F R L+KDVV
Sbjct: 340 AQLRNLSLGRSIHGISVKLGAVENDVVMNA-LVDMYAKCKALSDAKGIFGRVLNKDVVTW 398
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+++ GY + +G + +LF H+R G P
Sbjct: 399 NSLIAGYAENDMGSDALMLFSHMRVQGSLP 428
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 152/386 (39%), Gaps = 88/386 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD------- 48
M+ + P+ T VL AC L SL G +HG + G F+ + D
Sbjct: 219 MRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGE 278
Query: 49 -----GLFDRTIVFLDLYHLWSR--TEWSAFGS-FDGLLSNEENEY----------GTAL 90
+FD + F+DL LW+ ++ GS D LL ++++ T L
Sbjct: 279 AEDARQVFDE-LSFVDLV-LWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVL 336
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR------------YQPNV 134
S L L G+ +HG +KLG +E+D+ L+ + A C+ +V
Sbjct: 337 SASAQLRNLSLGRSIHGISVKLG-AVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDV 395
Query: 135 TLRNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 164
N++I+GYA+N +A+ LF K Y
Sbjct: 396 VTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTY 455
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
K + +N+ VNT L+++Y KC + A F D++ V AMI GYG+ SA G
Sbjct: 456 AVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSA-G 514
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
S D L NE + + + L H M+ +G S+ P+
Sbjct: 515 SID--LFNEMLKDNIQPNEAVFTSILSTCS--HTGMVTVG----KKCFESMAHYFNITPS 566
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPK 310
+ + M+ A+ G EEA++ K
Sbjct: 567 MKHYACMVDVLARAGNLEEALEFIQK 592
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
++ V L+DMYAK G + A FDR D++VV ++M G +GL +EG VLF+ +R
Sbjct: 161 DLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMR 220
Query: 384 KHGIEPRHQHYARVV 398
+ I P A V+
Sbjct: 221 QESILPSEYTMASVL 235
>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 813
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 141/591 (23%), Positives = 224/591 (37%), Gaps = 162/591 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------CYLFDGLFDRTI 55
V+P+ T P V+KAC L ++ + VH SLGF V Y +G
Sbjct: 108 VSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDAR 167
Query: 56 VFLDLYHLWSRTEWSAF-------GSFD---GLLSNEENEYG--TALDCSCDLEFLEQ-- 101
D L W+ G FD G Y ++ +C L
Sbjct: 168 RVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRG 227
Query: 102 ----GKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMIS 142
G +HG +I G E + ++ L+++ + C Q + N +I+
Sbjct: 228 NFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIA 287
Query: 143 GYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRN 172
GY +NG+ +EA LF K + YI +
Sbjct: 288 GYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPF 347
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSF---- 226
+V + + LID+Y K G V++A F + + DV + +AMI GY LH A +F
Sbjct: 348 DVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLI 407
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC--- 279
+G+++N C+ + L+ GK +H ++K LE ++ ++T A C
Sbjct: 408 QEGMVTNSLTMASVLPACAA-VAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRL 466
Query: 280 ---------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+ WN+MIS +++NG E A+ LF
Sbjct: 467 DLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAA 526
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
K M Y+ ++ + ++ V + LIDMY+KCG++ LA F+ K+ V +
Sbjct: 527 ANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWN 586
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------------- 391
++ YG HG E L+H + + GI P H
Sbjct: 587 SIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTRE 646
Query: 392 -------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDL RAG + AF I +MP V LL A ++
Sbjct: 647 YGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRL 697
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 162/420 (38%), Gaps = 117/420 (27%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG-------------------------- 166
N+ NAMI GYA+N +A KLF +
Sbjct: 323 NLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLH 382
Query: 167 ----KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--- 219
KS +N+ V ++DMY KCG++ A FD +D V +A+I +E
Sbjct: 383 GLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEG 442
Query: 220 --WSAFGS-FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
S FG+ + +E YG+ L G VHG +IK G+ L+ L+
Sbjct: 443 KTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALV 502
Query: 274 SLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------ 309
+ + C + + WNA+ISG++ +E++ + F
Sbjct: 503 DMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNF 562
Query: 310 ------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
K + + K E ++V + + L+DMY+KCG++ + + F +
Sbjct: 563 TYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKA 622
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------- 391
+D V +AM G+ HGLGEE LF H+ I+P H
Sbjct: 623 PKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGL 682
Query: 392 ----------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY+ +VD+L R+G A + I +MP E + R LLS KI
Sbjct: 683 FYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKI 742
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 123/289 (42%), Gaps = 55/289 (19%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFG 224
K+++ ++VIV T +DMYAKC ++ A F D ++ +AMI+GY +E + AF
Sbjct: 286 KTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFK 345
Query: 225 SFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F L N +E AL + ++ +G +HG IK L S++ ++ +
Sbjct: 346 LFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSN--LSSNICVANAILDM 403
Query: 281 YQPNVTL-----------------WNAMISGYAKNGYAEEAV---------KLFPKWMDY 314
Y L WNA+I+ +N + + K+ P Y
Sbjct: 404 YGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTY 463
Query: 315 ------YIGKSEYRN---------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
G+ + N + V + L+DMY+KCG ++ A R +
Sbjct: 464 GSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEE 523
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ +V +A+ G+ L E+ F H+ + G+EP + YA V+D A
Sbjct: 524 QTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCA 572
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 49/196 (25%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDLYH 62
P+ T VLKAC + G VHG+I G F+ L D ++ + + +
Sbjct: 458 PDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVD-MYSKCGMMEEAEK 516
Query: 63 LWSRTEWSAFGSFDGLLS-------NEENE-----------------YGTALDCSCDLEF 98
+ R E S++ ++S +E+++ Y T LD +L
Sbjct: 517 IHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLAT 576
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR-----------------NAMI 141
+ GK +H MIK LEL SD+ I+ T V Y + NAMI
Sbjct: 577 VGLGKQIHAQMIK--LELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMI 634
Query: 142 SGYAKNGYAEEAVKLF 157
G+A +G EEA++LF
Sbjct: 635 CGFAYHGLGEEALELF 650
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 144/604 (23%), Positives = 227/604 (37%), Gaps = 182/604 (30%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTI 55
V P+ P V KAC L + +G V+ + S+GF L ++ G D
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIAR 245
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEF-------LEQGKIVHGF 108
F + W+ S G S + E+ AL C D++ + I+ G+
Sbjct: 246 RFFEEIEFKDVFMWNIMVS--GYTS--KGEFKKALKCISDMKLSGVKPDQVTWNAIISGY 301
Query: 109 MIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------- 161
E S + + + ++PNV A+I+G +NGY EA+ +F K +
Sbjct: 302 AQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPN 361
Query: 162 ------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
Y I E ++++V L+D YAKC SV++A F
Sbjct: 362 SITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKF 421
Query: 198 DRTLDKDVVMRSAMIVGYGL---HEWS----AFGSFDGL---------LSNEENEYGTAL 241
D+V +AM+ GY L HE + + F G+ L +YG
Sbjct: 422 GMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYG--- 478
Query: 242 DCSCDLEFLEQ----------------------------GKIVHGFMIKLGLELESDL-- 271
D LEF ++ GK +HG++++ +EL + +
Sbjct: 479 DGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGS 538
Query: 272 -LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------- 308
LIS+ + C +V +WN++IS A++G + A+ L
Sbjct: 539 ALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEV 598
Query: 309 ------------PKWMDYYIGKSEYR---------NNVIVNTVLIDMYAKCGSVDLAPMF 347
K GK ++ N I+N+ LIDMY +CGS+ +
Sbjct: 599 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS-LIDMYGRCGSIQKSRRI 657
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------- 391
FD +D+V + M YG+HG G + LF R G++P H
Sbjct: 658 FDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLI 717
Query: 392 --------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+ YA +VDLL+RAG N +FI MP E +V +LL
Sbjct: 718 EEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLG 777
Query: 432 AWKI 435
A +I
Sbjct: 778 ACRI 781
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 153/404 (37%), Gaps = 110/404 (27%)
Query: 108 FMIKLGLELESDLLISLTAVCRY--------------------------QPNVTLRNAMI 141
+ ++LG ++ + L+++ VC + + NV A++
Sbjct: 103 YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIM 162
Query: 142 SGYAKNGYAEEAVKLF---------------PK-------WMDYYIGKSEY--------R 171
Y G EE +KLF PK +Y +GK Y
Sbjct: 163 EMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFE 222
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
N V ++DM+ KCG +D+A FF+ KDV M + M+ GY
Sbjct: 223 GNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY---------------- 266
Query: 232 NEENEYGTALDCSCDLEF-------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
+ E+ AL C D++ + I+ G+ E S + + + ++PN
Sbjct: 267 TSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPN 326
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWM-------------------------------D 313
V W A+I+G +NGY EA+ +F K +
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHG 386
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
Y I E ++++V L+D YAKC SV++A F D+V +AM GY L G E
Sbjct: 387 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHE 446
Query: 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
E L ++ GIEP + +V + G A +F M
Sbjct: 447 EAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490
>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 701
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 120/484 (24%), Positives = 192/484 (39%), Gaps = 141/484 (29%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAVCRY------------Q 131
AL L+ LE GK++HGF+ K +++SD+ LI L + C +
Sbjct: 111 ALKSCSGLQKLELGKMIHGFLKK---KIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPK 167
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWM-----------------------DYYIGKS 168
P+V L ++I+GY +NG E A+ F + + D+ +G+S
Sbjct: 168 PDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRS 227
Query: 169 --------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-- 218
+ + + ++++Y K GS+ +A F KD++ S+M+ Y +
Sbjct: 228 VHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGA 287
Query: 219 EWSAFGSFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDL 271
E +A F+ ++ E N +AL LE+GK +H + G EL+ S
Sbjct: 288 ETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTA 347
Query: 272 LISLTAVCRYQP-------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMD----- 313
L+ + C + P +V W + SGYA+ G A +++ +F +
Sbjct: 348 LMDMYLKC-FSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRP 406
Query: 314 -------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
++ KS + NN + LI++YAKC S+D A F
Sbjct: 407 DAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVF 466
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----------------------- 385
DVV S++ YG HG GEE L H + H
Sbjct: 467 KGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLI 526
Query: 386 --GIE------------PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
GI+ P +HY +VDLL R G + A I NMP++ V ALL
Sbjct: 527 EEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLG 586
Query: 432 AWKI 435
A +I
Sbjct: 587 ACRI 590
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 119/477 (24%), Positives = 185/477 (38%), Gaps = 137/477 (28%)
Query: 94 CDLEFLEQ-GKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVT 135
C E L + G +HG +I G D L++ V Y NV
Sbjct: 83 CASEALSEFGNQLHGLVISCGFHF--DPLVANALVAMYSKFGQLSDALKLFNTMPDTNVV 140
Query: 136 LRNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYI 165
N MI+G+ +NG+ +EA LF K + YI
Sbjct: 141 TWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYI 200
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AF 223
+ +V + + LID+Y KC V +A F ++ + D+V+ +A+I GY L+ + A
Sbjct: 201 LRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDAL 260
Query: 224 GSFDGLLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLT 276
F LL + + + L L L GK +H ++K GL+ + ++ +
Sbjct: 261 EIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMY 320
Query: 277 AVC----------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFP--------------- 309
A C R P + WNA+I+ ++NG +EA+ LF
Sbjct: 321 AKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSIS 380
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
K + ++ K + + V + LIDMY KCG++ +A FD +K
Sbjct: 381 AALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREK 440
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------- 391
+ V +++ YG HG E LFH + + GI+P H
Sbjct: 441 NEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYF 500
Query: 392 -------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDL RAG N AF+ I NMP V LL A ++
Sbjct: 501 RCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRV 557
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 128/331 (38%), Gaps = 90/331 (27%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNE 233
V + LI +YA+ G ++ A FD+ +KD V+ + M+ G+ SA F+ + + +
Sbjct: 9 VGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQ 68
Query: 234 EN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP------ 283
+ + L E G +HG +I G D L++ V Y
Sbjct: 69 TKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHF--DPLVANALVAMYSKFGQLSD 126
Query: 284 -----------NVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
NV WN MI+G+ +NG+ +EA LF
Sbjct: 127 ALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTE 186
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
K + YI + +V + + LID+Y KC V +A F ++ + D+V+ +A+
Sbjct: 187 SASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAI 246
Query: 363 TVGYGLHGLGEEGWVLFH-----------------------------------HIRKHGI 387
GY L+GL + +F +I KHG+
Sbjct: 247 ISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGL 306
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+ R + ++D+ A+ G + A++ MP
Sbjct: 307 DERRHVGSAIMDMYAKCGRLDLAYQIFRRMP 337
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 127/474 (26%), Positives = 192/474 (40%), Gaps = 136/474 (28%)
Query: 96 LEFLEQGKIVHGFMIKLGLE----LESDLLI------SLTAVCRYQPNVTLRN-----AM 140
L LEQG+ VH ++K G++ LE+ LL SLT R + RN AM
Sbjct: 109 LRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAM 168
Query: 141 ISGYAKNGYAEEAVKLF---------PKWMDYY---------------------IGKSEY 170
I + EA K + P + + I K+
Sbjct: 169 IEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGL 228
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
V T L+ MYAKCG + A + FD+ +K+VV + +I GY + + + L
Sbjct: 229 ELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYA-QQGQVDVALELLE 287
Query: 231 SNEENE-------YGTALD-CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC 279
++ E Y + L C+ L LE GK VH ++I+ G E + LI++ C
Sbjct: 288 KMQQAEVAPNKITYTSILQGCTTPLA-LEHGKKVHRYIIQSGYGREIWVVNALITMYCKC 346
Query: 280 R------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
+V W AM++GYA+ G+ +EA+ LF + I
Sbjct: 347 GGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSAL 406
Query: 317 -----------GKSEYRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
GKS ++ +V + + L+ MYAKCGS+D A + F++ +++VV
Sbjct: 407 TSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVV 466
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------------RH---- 391
+AM G HG E F ++K GI+P +H
Sbjct: 467 AWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSM 526
Query: 392 ----------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY+ VDLL RAG+ A I+ MP + SV ALLSA +I
Sbjct: 527 YLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRI 580
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 43/202 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFD------G 49
MQ A VAPN T +L+ C +L G +VH I G+ +V L G
Sbjct: 289 MQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGG 348
Query: 50 LFDRTIVFLDLYH----LWSR--TEWSAFGSFDGL-----------LSNEENEYGTALDC 92
L + +F DL H W+ T ++ G D + ++ + +AL
Sbjct: 349 LKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTS 408
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLR 137
FL++GK +H ++ G L+ L+S+ A C + NV
Sbjct: 409 CSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAW 468
Query: 138 NAMISGYAKNGYAEEAVKLFPK 159
AMI+G A++G EA++ F +
Sbjct: 469 TAMITGCAQHGRCREALEYFEQ 490
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 151/356 (42%), Gaps = 100/356 (28%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFG 224
K+ ++ NV V++VLIDMYAK G +D A F R + DVV +AMI GY H+ A
Sbjct: 466 KTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALN 525
Query: 225 SF----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
F D + ++ + +A+ ++ L+QG+ +H G + + L+SL A
Sbjct: 526 LFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYA 585
Query: 278 VCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
C Y + WN+++SG+A++GY EEA+ +F
Sbjct: 586 RCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGS 645
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + I K+ Y + V+ LI +YAKCG++D D
Sbjct: 646 AVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTID------------D 693
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------------- 384
+ S M GY HG G E LF +++
Sbjct: 694 ISWNS-MITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFR 752
Query: 385 -----HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H + P+ +HYA VVDLL R+G + A +F+ MPI+ V R LLSA +
Sbjct: 753 SMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNV 808
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 108/481 (22%), Positives = 177/481 (36%), Gaps = 118/481 (24%)
Query: 15 LVLKACVA-LPSLLMGPRVHGQIFSLGF----LVC------YLFDGLFDRTIVFLDLYHL 63
+VL+ C S ++H + + GF +C Y +G + +L
Sbjct: 168 VVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFE--NL 225
Query: 64 WSRTEWSAFGSFDGLLSNEENEYGTALDC-----SC-DLEFLEQGKIVHGFMIKLGLELE 117
+R S GL N E L C +C +EF E GK +HG ++K G E
Sbjct: 226 KARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSE 285
Query: 118 SDLLISLTAV---------------CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK--- 159
+ + +L + C Q + N++ISG A+ GY A+ LF K
Sbjct: 286 TYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNL 345
Query: 160 ---------------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
Y K+ ++++V L+D+Y KC +
Sbjct: 346 DCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKT 405
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
A FF D + +S I +G++ N+ Y + L L +
Sbjct: 406 AHEFFLCYGQLDNLNKSFQIFTQM--------QIEGIVPNQFT-YPSILKTCTTLGATDL 456
Query: 253 GKIVHGFMIKLGLELE---SDLLISLTA-----------VCRYQPN-VTLWNAMISGYAK 297
G+ +H ++K G + S +LI + A R + N V W AMI+GY +
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQ 516
Query: 298 NGYAEEAVKLFPKWMDYYIGK------------------------------SEYRNNVIV 327
+ EA+ LF + D I S Y +++ +
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSI 576
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
L+ +YA+CG V A FD+ KD V +++ G+ G EE +F + K G+
Sbjct: 577 GNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL 636
Query: 388 E 388
E
Sbjct: 637 E 637
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 106/291 (36%), Gaps = 86/291 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGL 50
MQ+ + PN T P +LK C L + +G ++H Q+ GF + Y G
Sbjct: 429 MQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGK 488
Query: 51 FDRTIVFLDLYHLWSRTEWSA----------FGSFDGLLSNEENE--------YGTALDC 92
D + W+A F L +++ + +A+
Sbjct: 489 LDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISA 548
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLR 137
++ L+QG+ +H G + + L+SL A C Y +
Sbjct: 549 CAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSW 608
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
N+++SG+A++GY EEA+ +F K + I K
Sbjct: 609 NSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRK 668
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ Y + V+ LI +YAKCG++D D+ S MI GY H
Sbjct: 669 TGYDSETEVSNALITLYAKCGTID------------DISWNS-MITGYSQH 706
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLRNAMIS 142
+G+A+ + ++ + GK +HG + K G + E S+ LI+L A C +++ N+MI+
Sbjct: 643 FGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISW-NSMIT 701
Query: 143 GYAKNGYAEEAVKLF 157
GY+++G EA+KLF
Sbjct: 702 GYSQHGCGFEALKLF 716
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 118/425 (27%), Positives = 172/425 (40%), Gaps = 135/425 (31%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKS----------------------------- 168
N MI+GY KNG +EA+ +F D+ IGK
Sbjct: 193 NTMINGYFKNGCVKEALMVF----DWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA 248
Query: 169 --EYRN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWS 221
E +N ++ V L+DMYAKCG++D A M F +DVV + M+ GY L+ S
Sbjct: 249 LVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARS 308
Query: 222 AF-----GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
A F+ + N + L L L+ G+ +HG+ I+ LE E LI
Sbjct: 309 ALLLCQMMQFESVKPNFVT-LASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALI 367
Query: 274 SLTAVCRYQPNVTL---------------WNAMISGYAKNGYAEEAVKLFPKW------- 311
+ A C NV L WNA+ISG NG + +A++LF +
Sbjct: 368 DMYAKCN---NVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDP 424
Query: 312 -----------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
M Y+ +S + + + V T+LID+Y+KCGS++ A F
Sbjct: 425 NDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIF 484
Query: 349 D--RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------- 389
+ DKD++ SA+ GYG+HG GE LF + + G++P
Sbjct: 485 NGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGL 544
Query: 390 -------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
R HY V+DLL RAG A++ I M +V ALL
Sbjct: 545 VDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALL 604
Query: 431 SAWKI 435
+ I
Sbjct: 605 GSCVI 609
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 112/282 (39%), Gaps = 62/282 (21%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSN-- 232
+ L YA CG A FD + + +AMI Y GL + A G F +L++
Sbjct: 60 SSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGL-SYDALGLFVQMLASGR 118
Query: 233 ---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCR 280
+ Y + D E G ++H + G + ++ + SL A V R
Sbjct: 119 RWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVAR 178
Query: 281 ------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS--------------- 319
+ + WN MI+GY KNG +EA+ +F D+ IGK
Sbjct: 179 RVFDLMRERTLVSWNTMINGYFKNGCVKEALMVF----DWMIGKGIEPDCATVVSVLPVC 234
Query: 320 ----------------EYRN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
E +N ++ V L+DMYAKCG++D A M F +DVV +
Sbjct: 235 SYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWT 294
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
M GY L+G +L ++ ++P A V+ A
Sbjct: 295 TMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 55/230 (23%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR------ 137
+ L L L+ G+ +HG+ I+ LE E LI + A C N++ R
Sbjct: 329 ASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCN-NVNLSFRVFSKXS 387
Query: 138 -------NAMISGYAKNGYAEEAVKLFPKW------------------------------ 160
NA+ISG NG + +A++LF +
Sbjct: 388 KQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARN 447
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYGLH 218
M Y+ +S + + + V T+LID+Y+KCGS++ A F+ DKD++ SA+I GYG+H
Sbjct: 448 MHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMH 507
Query: 219 EW--SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIK 262
+A FD ++ + E + + L +++G + FM++
Sbjct: 508 GHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLE 557
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 153/411 (37%), Gaps = 112/411 (27%)
Query: 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTA---VCRYQPNVT--- 135
Y + L + + K +H I LGL LL SL A +C P+
Sbjct: 20 RYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLF 79
Query: 136 --LRN-------AMISGYAKNGYAEEAVKLF-------PKWMDYY--------------- 164
LRN AMI Y +G + +A+ LF +W D Y
Sbjct: 80 DELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLP 139
Query: 165 -IGK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
+G S + ++ V L+ MY CG +++A FD ++ +V + MI GY
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGY 199
Query: 216 GLHEW--SAFGSFDGLLSNEENEYGTALDCS--------CD-LEFLEQGKIVHGF--MIK 262
+ A FD ++ G DC+ C L+ LE G+ VH +
Sbjct: 200 FKNGCVKEALMVFDWMIGK-----GIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN 254
Query: 263 LGLELES-DLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP 309
LG ++ + L+ + A C + +V W M++GY NG A A+ L
Sbjct: 255 LGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-LLC 313
Query: 310 KWMDYYIGKSEY-------------------------------RNNVIVNTVLIDMYAKC 338
+ M + K + + VIV T LIDMYAKC
Sbjct: 314 QMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKC 373
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+V+L+ F + + +A+ G +GL + LF + ++P
Sbjct: 374 NNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDP 424
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 34/156 (21%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLF-------PKWMDYY----------------IGK 318
P++ WNAMI Y +G + +A+ LF +W D Y +G
Sbjct: 84 NPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGA 143
Query: 319 --------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
S + ++ V L+ MY CG +++A FD ++ +V + M GY +G
Sbjct: 144 LIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNG 203
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
+E ++F + GIEP A VV +L Y
Sbjct: 204 CVKEALMVFDWMIGKGIEP---DCATVVSVLPVCSY 236
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 152/358 (42%), Gaps = 86/358 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWS 221
+I S + +++++ +++MYAKCGS++ A FD+ KD+V + +I GY
Sbjct: 130 HIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASE 189
Query: 222 AFGSFDGLL--SNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A F +L + NE+ + L S G+ +H F +K G ++ + SL
Sbjct: 190 ALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLD 249
Query: 278 V-CRYQ--------------PNVTLWNAMISGYAKNGYAEEAVKLF-------------- 308
+ R+ NV WNA+I+G+A+ G E ++LF
Sbjct: 250 MYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFT 309
Query: 309 ----------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KW+ ++ KS + + LIDMYAK GS+ A F R +
Sbjct: 310 YSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLV 369
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------------------ 382
+D+V +++ GY HGLG E LF +
Sbjct: 370 KQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQY 429
Query: 383 -----RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+KH IE + H+ VVDLL RAG N A KFI MPI+ +V ALL + ++
Sbjct: 430 YFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRM 487
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 45/223 (20%)
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL---ISLTAVCRY--- 281
G L E Y L+ L L+QG+ +H + E + LL +++ A C
Sbjct: 99 GSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEE 158
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------ 320
++ W +ISGY+++G A EA+ LFPK + +E
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT 218
Query: 321 ------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y NV V + L+DMYA+ + A + F+ K+VV +A+
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNAL 278
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
G+ G GE LF + + G EP H Y+ V A +G
Sbjct: 279 IAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSG 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 30/116 (25%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLF------------------------------PKWMD 162
NV NA+I+G+A+ G E ++LF KW+
Sbjct: 271 NVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVH 330
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
++ KS + + LIDMYAK GS+ A F R + +D+V +++I GY H
Sbjct: 331 AHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQH 386
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 139/334 (41%), Gaps = 87/334 (26%)
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL----LSNEENEYGTAL 241
G V A F T ++ M + +I GY + + SA + + +S +G L
Sbjct: 15 GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74
Query: 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLL---ISLTAVCRY------------QPNVT 286
+ C L L +G+ +H ++K GL+ E+ LL I L A C +P+
Sbjct: 75 NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134
Query: 287 LWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYI 316
W+ M+SGY++NG A E +KL KW+ YI
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYI 194
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
K + +V++ T L+ MY+KCGS+D A F ++DV S M GY +HG E+
Sbjct: 195 DKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKAL 254
Query: 377 VLFHHIRK------------------------------------HGIEPRHQHYARVVDL 400
LF +++ + I P+ +HY +VDL
Sbjct: 255 QLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDL 314
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
RAG HA KFI MPIE + + R LL A K
Sbjct: 315 FCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACK 348
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 136/348 (39%), Gaps = 104/348 (29%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY----- 130
+S +G L+ C L L +G+ +H ++K GL+ E+ L LI L A C
Sbjct: 63 ISPNSYTFGFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYAC 122
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------- 158
+P+ + M+SGY++NG A E +KL
Sbjct: 123 VMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLG 182
Query: 159 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
KW+ YI K + +V++ T L+ MY+KCGS+D A F ++DV S MI
Sbjct: 183 VLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIA 242
Query: 214 GYGL--HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
GY + H+ A FD +++ KI+
Sbjct: 243 GYAIHGHDEKALQLFDA---------------------MKRSKII--------------- 266
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK-WMDYYIGKSEYRNNVIVNTV 330
PN + +++S Y+ +G E+ ++F W +Y I +
Sbjct: 267 -----------PNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITP-----QIKHYGC 310
Query: 331 LIDMYAKCGSVDLAPMFFDR-TLDKDVVMRSAM---TVGYGLHGLGEE 374
++D++ + G V A F ++ +VV+ + +G GLGE
Sbjct: 311 MVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEH 358
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 118/425 (27%), Positives = 172/425 (40%), Gaps = 135/425 (31%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKS----------------------------- 168
N MI+GY KNG +EA+ +F D+ IGK
Sbjct: 193 NTMINGYFKNGCVKEALMVF----DWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA 248
Query: 169 --EYRN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWS 221
E +N ++ V L+DMYAKCG++D A M F +DVV + M+ GY L+ S
Sbjct: 249 LVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARS 308
Query: 222 AF-----GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
A F+ + N + L L L+ G+ +HG+ I+ LE E LI
Sbjct: 309 ALLLCQMMQFESVKPNFVT-LASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALI 367
Query: 274 SLTAVCRYQPNVTL---------------WNAMISGYAKNGYAEEAVKLFPKW------- 311
+ A C NV L WNA+ISG NG + +A++LF +
Sbjct: 368 DMYAKCN---NVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDP 424
Query: 312 -----------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
M Y+ +S + + + V T+LID+Y+KCGS++ A F
Sbjct: 425 NDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIF 484
Query: 349 D--RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------- 389
+ DKD++ SA+ GYG+HG GE LF + + G++P
Sbjct: 485 NGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGL 544
Query: 390 -------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
R HY V+DLL RAG A++ I M +V ALL
Sbjct: 545 VDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALL 604
Query: 431 SAWKI 435
+ I
Sbjct: 605 GSCVI 609
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 55/230 (23%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR------ 137
+ L L L+ G+ +HG+ I+ LE E LI + A C N++ R
Sbjct: 329 ASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCN-NVNLSFRVFSKTS 387
Query: 138 -------NAMISGYAKNGYAEEAVKLFPKW------------------------------ 160
NA+ISG NG + +A++LF +
Sbjct: 388 KQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARN 447
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYGLH 218
M Y+ +S + + + V T+LID+Y+KCGS++ A F+ DKD++ SA+I GYG+H
Sbjct: 448 MHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMH 507
Query: 219 EW--SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIK 262
+A FD ++ + E + + L +++G + FM++
Sbjct: 508 GHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLE 557
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 134/347 (38%), Gaps = 94/347 (27%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF-------PKWMDYY----------------IGK 167
P++ NAMI Y +G + +A+ LF +W D Y +G
Sbjct: 84 NPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGA 143
Query: 168 --------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
S + ++ V L+ MY CG +++A FD ++ +V + MI GY +
Sbjct: 144 LIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNG 203
Query: 220 W--SAFGSFDGLLSNEENEYGTALDCS--------CD-LEFLEQGKIVHGF--MIKLGLE 266
A FD ++ G DC+ C L+ LE G+ VH + LG +
Sbjct: 204 CVKEALMVFDWMIGK-----GIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGED 258
Query: 267 LES-DLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313
+ + L+ + A C + +V W M++GY NG A A+ L + M
Sbjct: 259 ISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-LLCQMMQ 317
Query: 314 YYIGKSEY-------------------------------RNNVIVNTVLIDMYAKCGSVD 342
+ K + + VIV T LIDMYAKC +V+
Sbjct: 318 FESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVN 377
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
L+ F +T + +A+ G +GL + LF + ++P
Sbjct: 378 LSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDP 424
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 34/156 (21%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLF-------PKWMDYY----------------IGK 318
P++ WNAMI Y +G + +A+ LF +W D Y +G
Sbjct: 84 NPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGA 143
Query: 319 --------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
S + ++ V L+ MY CG +++A FD ++ +V + M GY +G
Sbjct: 144 LIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNG 203
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
+E ++F + GIEP A VV +L Y
Sbjct: 204 CVKEALMVFDWMIGKGIEP---DCATVVSVLPVCSY 236
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 145/618 (23%), Positives = 240/618 (38%), Gaps = 181/618 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------CYLFDGLFDRTIVF 57
P+ T P V+KAC + + +G +HG + +G ++ Y G D +
Sbjct: 144 PDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKV 203
Query: 58 LDLYHLWSRTEWSAF-----------GSFDGLLSNEENEYGTALD----------CSCDL 96
D + W++ SFD LL E G D C+ +
Sbjct: 204 FDFMPETNLVSWNSMICAFSENGFSRDSFD-LLMEMLGEEGLLPDVVTVVTILPVCAGEG 262
Query: 97 EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMI 141
E ++ G +HG +KLGL E ++ ++ + + C Y NV N MI
Sbjct: 263 E-VDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMI 321
Query: 142 SGYAKNGYAEEAVKLF---------------------PKWMDYYIGKS-------EYRN- 172
S ++ G EA L P +D +S +R+
Sbjct: 322 SAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHC 381
Query: 173 --NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
+V ++ I YAKCG+++ A F DK V +A+I G+ G + F
Sbjct: 382 FQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQ 441
Query: 228 GLLSNEENEYGT--ALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--- 281
S ++ ++ T +L +C L+ L+ GK +HG++++ GLE +D + + + Y
Sbjct: 442 MTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLE--TDFFVGTSLLSHYIHC 499
Query: 282 --------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------- 314
N+ WNAMISGY++NG E++ LF K +
Sbjct: 500 GKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVF 559
Query: 315 -----------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
Y+ K+ + V +IDMYAK G + + FD DK+V
Sbjct: 560 GACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVA 619
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------------------------- 386
+A+ V +G+HG G+E L+ ++K G
Sbjct: 620 SWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEM 679
Query: 387 -----IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWE 441
IEP+ +HYA ++D+LARAG + A + + MP E + +LL + +
Sbjct: 680 QNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCR------- 732
Query: 442 NMLQTIRGIDEGEKTDKR 459
T ++ GEK K+
Sbjct: 733 ----TFGALEIGEKVAKK 746
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 74/343 (21%)
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNG-----YAEEAVKLFPK----WMDYYIGK--- 167
L + A+C N+T +I +++N A+EA+ L + D G+
Sbjct: 8 FLQEIAALCE-TDNLTTALILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLH 66
Query: 168 ------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLH 218
+ YRN+ ++NT LI MYA CGS + + FD K+++ +A++ GY GL+
Sbjct: 67 KFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLY 126
Query: 219 EWSAFGSFDGLLSNEENE-----YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SD 270
F L+S+ + + + + + + + G+++HG +IK+GL L+ +
Sbjct: 127 -GDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGN 185
Query: 271 LLISLTAVC----------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWM------ 312
L+ + C + P N+ WN+MI +++NG++ ++ L + +
Sbjct: 186 ALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLL 245
Query: 313 -------------------DYYIG------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
D +G K V+VN ++ MY+KCG ++ A M
Sbjct: 246 PDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMS 305
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390
F + +K+VV + M + L G E + L ++ G E +
Sbjct: 306 FVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMK 348
>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Vitis vinifera]
Length = 751
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/416 (25%), Positives = 171/416 (41%), Gaps = 119/416 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWM------DYYIGKSEYR-------------------- 171
N+MI+ Y +NG ++EA+ ++ + + D + S ++
Sbjct: 145 NSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVV 204
Query: 172 -----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG 224
+NV V + L+DMYAK G + A + D+ + KDVV+ +A+IVGY H + +
Sbjct: 205 LGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQ 264
Query: 225 SFDGLLSN--EENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLI--- 273
F + E NEY + L C +LE L G+++HG ++K GLE ++ LL
Sbjct: 265 VFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYY 324
Query: 274 -------SLTAVCRY-QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
SL ++ PN W ++I G +NG E A+ F + + I + + +
Sbjct: 325 RCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSS 384
Query: 326 I------------------------------VNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ V LID Y KCGS ++A F+ L+ D
Sbjct: 385 VLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVD 444
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------ 391
VV ++M Y +G G E LF ++ G+EP +
Sbjct: 445 VVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFS 504
Query: 392 ------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA +VDLL RAG A I + I + + R LLSA +I
Sbjct: 505 SARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNIS-DVVIWRTLLSACRI 559
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 106/264 (40%), Gaps = 56/264 (21%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF-----DGLLSN 232
LID Y KCGSV A FD + +V ++MI Y + S A + DG+L +
Sbjct: 116 LIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPD 175
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ---------- 282
E + + DL + +G+ HG + LG+ + S++ + V Y
Sbjct: 176 EFT-FSSVFKAFSDLGLVHEGQRAHGQSVVLGVGV-SNVFVGSALVDMYAKFGKMRDARL 233
Query: 283 -------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------- 321
+V L+ A+I GY+ +G E++++F I +EY
Sbjct: 234 VSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLED 293
Query: 322 ----------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ V T L+ MY +CG VD + F + ++ + V +++ VG
Sbjct: 294 LTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVG 353
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEP 389
+G E + F + + I P
Sbjct: 354 LVQNGREEIALLKFRQMLRSSITP 377
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 96/447 (21%), Positives = 152/447 (34%), Gaps = 139/447 (31%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
+ P+ T V KA L + G R HGQ LG V +F G +D+Y +
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGS-----ALVDMYAKFG 226
Query: 66 RTEWSAFGS----------FDGLLSN----------------------EENEY--GTALD 91
+ + S F L+ E NEY + L
Sbjct: 227 KMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLV 286
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLE----LESDLLI----------SLTAVCRY-QPNVTL 136
C +LE L G+++HG ++K GLE ++ LL SL ++ PN
Sbjct: 287 CCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVT 346
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI--------------------- 175
++I G +NG E A+ F + + I + + + +
Sbjct: 347 WTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVM 406
Query: 176 ---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
V LID Y KCGS ++A F+ L+ DVV ++MI Y
Sbjct: 407 KFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYA---------- 456
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+N +G E ++ G M GLE PN
Sbjct: 457 -------QNGFGH-----------EALQLFSG-MKDTGLE----------------PNNV 481
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWM---DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
W ++S G EE +F + + K Y ++D+ + G +
Sbjct: 482 TWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHY-------ACMVDLLGRAGRLKE 534
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHG 370
A M ++ DVV+ + +HG
Sbjct: 535 AEMLINQVNISDVVIWRTLLSACRIHG 561
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 111/416 (26%), Positives = 165/416 (39%), Gaps = 124/416 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
E+G+ +HG ++KLG Y+P++ + ++IS YA+NG E+A K+F
Sbjct: 82 FEEGQQIHGHVLKLG----------------YEPDLYVHTSLISMYAQNGRLEDAHKVF- 124
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+S +R+ V+ T LI YA G++ A FD KDVV +AMI GY
Sbjct: 125 -------DRSSHRD-VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGY--- 173
Query: 219 EWSAFGSFDGLLS-----------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
+ GS+ L +E T L +E G+ VH ++ G
Sbjct: 174 --AETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGS 231
Query: 268 E---SDLLISLTAVCRYQ------------PNVTLWNAMISGYAKNGYAEEAVKLFP--- 309
+ LI L + C +V WN +I GY +EA+ LF
Sbjct: 232 NLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML 291
Query: 310 ---------------------------KWMDYYIGKS--EYRNNVIVNTVLIDMYAKCGS 340
+W+ YI K + N + T LIDMYAKCG
Sbjct: 292 RSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGD 351
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------- 389
++ A F+ L K + +AM G+ +HG G+ LF +RK+GIEP
Sbjct: 352 IEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSA 411
Query: 390 ----------RH---------------QHYARVVDLLARAGYSNHAFKFIMNMPIE 420
RH +HY ++DLL +G A + I MP+E
Sbjct: 412 CSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPME 467
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 158/390 (40%), Gaps = 90/390 (23%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P+ L + ++ + G E+ + +D + N++++ ++++MYAKCG +D
Sbjct: 85 PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHF----LDNHLVLQNIIVNMYAKCGCLD 140
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLL--SNEENEY--GTALDCSC 245
A FD KD+V +A+I G+ + A F +L + N + + L S
Sbjct: 141 DARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASG 200
Query: 246 DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTL------------WNA 290
L+ G +H F +K G + L+ + A C + L WNA
Sbjct: 201 SEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNA 260
Query: 291 MISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSE 320
+ISG+A+ G E A+ L KW+ ++ KS
Sbjct: 261 LISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSG 320
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG-------- 372
+ + L+DMYAK GS+D A FDR + DVV + M G HGLG
Sbjct: 321 LKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFE 380
Query: 373 ---------------------------EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+EG F ++K+ +EP HY VDLL R G
Sbjct: 381 QMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVG 440
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ A +FI MPIE +V ALL A ++
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLGACRM 470
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR------------NAMISG 143
L+ G +H F +K G + L+ + A C + L NA+ISG
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
+A+ G E A+ L KW+ ++ KS +
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLI 324
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ L+DMYAK GS+D A FDR + DVV + M+ G H
Sbjct: 325 AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 143/604 (23%), Positives = 225/604 (37%), Gaps = 182/604 (30%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTI 55
V P+ P V KAC L + +G V+ + S+GF L ++ G D
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIAR 245
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEF-------LEQGKIVHGF 108
F + W+ S G S + E+ AL C D++ + I+ G+
Sbjct: 246 RFFEEIEFKDVFMWNIMVS--GYTS--KGEFKKALKCISDMKLSGVKPDQVTWNAIISGY 301
Query: 109 MIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------- 161
E S + + + ++PNV A+I+G +NGY EA+ +F K +
Sbjct: 302 AQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPN 361
Query: 162 ------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
Y I E ++++V L+D YAKC SV++A F
Sbjct: 362 SITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKF 421
Query: 198 DRTLDKDVVMRSAMIVGYGLH-------EWSAFGSFDGL---------LSNEENEYGTAL 241
D+V +AM+ GY L E + F G+ L +YG
Sbjct: 422 GMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYG--- 478
Query: 242 DCSCDLEFLEQ----------------------------GKIVHGFMIKLGLELESDL-- 271
D LEF ++ GK +HG++++ +EL + +
Sbjct: 479 DGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGS 538
Query: 272 -LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------- 308
LIS+ + C +V +WN++IS A++G + A+ L
Sbjct: 539 ALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEV 598
Query: 309 ------------PKWMDYYIGKSEYR---------NNVIVNTVLIDMYAKCGSVDLAPMF 347
K GK ++ N I+N+ LIDMY +CGS+ +
Sbjct: 599 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS-LIDMYGRCGSIQKSRRI 657
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------- 391
FD +D+V + M YG+HG G + LF R G++P H
Sbjct: 658 FDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLI 717
Query: 392 --------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+ YA +VDLL+RAG N +FI MP E +V +LL
Sbjct: 718 EEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLG 777
Query: 432 AWKI 435
A +I
Sbjct: 778 ACRI 781
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 138/355 (38%), Gaps = 84/355 (23%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------------PK-------WMDYYIGKS 168
+ NV A++ Y G EE +KLF PK +Y +GK
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211
Query: 169 EY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
Y N V ++DM+ KCG +D+A FF+ KDV M + M+ GY
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY----- 266
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEF-------LEQGKIVHGFMIKLGLELESDLLI 273
+ E+ AL C D++ + I+ G+ E S +
Sbjct: 267 -----------TSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFL 315
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------------------- 312
+ + ++PNV W A+I+G +NGY EA+ +F K +
Sbjct: 316 EMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNL 375
Query: 313 ----------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y I E ++++V L+D YAKC SV++A F D+V +AM
Sbjct: 376 SLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAM 435
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
GY L G EE L ++ GIEP + +V + G A +F M
Sbjct: 436 LAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 173/414 (41%), Gaps = 117/414 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGK 167
N+++SGYA+ G E ++L K + +I +
Sbjct: 216 NSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILR 275
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGS 225
+ + + T LI MY KCG+V+ A F+ + KDV+ +AMI G ++ + A
Sbjct: 276 AGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTV 335
Query: 226 FDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
F +L + + L +L G VHG++++ ++L+ + L+++ A
Sbjct: 336 FRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAK 395
Query: 279 CRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP----------------- 309
C + + ++ WNA++SG+A+NG+ +A+ LF
Sbjct: 396 CGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSL 455
Query: 310 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
KW+ ++ KS ++++T L+DMY+KCG + A FDR +D+
Sbjct: 456 LQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDL 515
Query: 357 VMRSAMTVGYGLHGLGE-----------------------------------EGWVLFHH 381
V S++ GYG HG GE +G FH
Sbjct: 516 VSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHS 575
Query: 382 IRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ K GIEPR +H A +VDLL+RAG A+ F M + + V LL A +
Sbjct: 576 MTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACR 629
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/466 (21%), Positives = 186/466 (39%), Gaps = 95/466 (20%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSR- 66
P+ T P ++KAC +L G H ++ + DG + + L + +S+
Sbjct: 46 PDAHTFPSLVKACTSLDLFSHGLSFHQRV---------IVDGYSSDSYIATSLINFYSKF 96
Query: 67 -TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
SA FD + + T + C + G E D+ S+
Sbjct: 97 GHNQSARKVFDTMDDRNVVPWTTMIGC-----YTRAG--------------EHDVAFSMY 137
Query: 126 AVCR---YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
+ R QP+ ++SG E V L + + + + + ++V + +++
Sbjct: 138 NIMRRQGIQPSSVTMLGLLSGVL------ELVHL--QCLHACVIQYGFGSDVALANSMLN 189
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-------LHEWSAFGSFDGLLSNEEN 235
+Y KCG V+ A F+ +DV+ ++++ GY + + DG+ +++
Sbjct: 190 VYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQT 249
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---C------------R 280
+G+ + + L GK+VHG +++ GLE +S + SL + C
Sbjct: 250 -FGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY-------------------------- 314
+V W AMISG +N A+ AV +F + +
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGT 368
Query: 315 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
YI + + ++ L+ MYAKCG ++ + FDR +D+V +A+ G+ +G
Sbjct: 369 SVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNG 428
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
+ +LF+ +RK P ++ A G + H K+I N
Sbjct: 429 HLCKALLLFNEMRKARQRPDSITVVSLLQACASIG-ALHQGKWIHN 473
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 132/524 (25%), Positives = 227/524 (43%), Gaps = 116/524 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
MQ + P+ +L+ C+ L S+ +G VH QI GF V ++ +
Sbjct: 162 MQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQE 221
Query: 57 FLDLYHLWSR------TEWSA-----------FGSFD--------GLLSNEENEYGTALD 91
D Y +++ W+A +FD G+ + + G A
Sbjct: 222 IEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC------RYQPN---VTLR-- 137
L + + K V G+ ++LG++ L LI + + C R N +T R
Sbjct: 282 IGM-LRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFN 340
Query: 138 ---NAMISGYAKNGYAEEAVKLFPK------WMDYY----------------IGKSEYR- 171
NAMISGY ++G+ E+A++LF K ++D+Y +GK +
Sbjct: 341 APWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHAR 400
Query: 172 --------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEW-S 221
N V ++ + + YAKCGS++ F+R D+D++ ++++ Y EW
Sbjct: 401 AIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDK 460
Query: 222 AFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
A F +G+ N+ + C+ +L LE G+ VHG + K+GL+++
Sbjct: 461 AIEIFSNMRAEGIAPNQFTFSSVLVSCA-NLCLLEYGQQVHGIICKVGLDMDK------- 512
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+ +A++ YAK G +A K+F + + + + T +I +A
Sbjct: 513 ---------CIESALVDMYAKCGCLGDAKKVFNRISN---------ADTVSWTAIIAGHA 554
Query: 337 KCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRH 391
+ G VD A F R + + + V + GL EEG F ++K +G+ P
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEM 614
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDLL+R G+ N A +FI MP+E V + LL A ++
Sbjct: 615 EHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRV 658
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 119/298 (39%), Gaps = 63/298 (21%)
Query: 164 YIGKSEYRNN---VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE- 219
++ KS++ N+ V++N V Y+KC +D A FD+ ++ + +I G +
Sbjct: 93 FLLKSKFSNHHSLVLLNHV-AHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGL 151
Query: 220 -WSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDL 271
F F + S ++ Y L L+ +E G +VH ++ G S
Sbjct: 152 FLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTA 211
Query: 272 LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------- 312
L+++ A + + NV WNAMI+G+ N +A LF + M
Sbjct: 212 LLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPD 271
Query: 313 -DYYIGKSE----------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+IG ++ +N +V T LIDM +KCGS+ A F+
Sbjct: 272 AQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFN 331
Query: 350 RTLDKDVVMR-----SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ R +AM GY G E+ LF + ++ I H Y V + +A
Sbjct: 332 SHF---ITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIA 386
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 130/523 (24%), Positives = 226/523 (43%), Gaps = 114/523 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
MQ + P+ +L+ C+ L S+ +G VH QI GF V ++ +
Sbjct: 162 MQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQE 221
Query: 57 FLDLYHLWSR------TEWSA-----------FGSFD--------GLLSNEENEYGTALD 91
D Y +++ W+A +FD G+ + + G A
Sbjct: 222 IEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC------RYQPN---VTLR-- 137
L + + K V G+ ++LG++ L LI + + C R N +T R
Sbjct: 282 IGM-LRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFN 340
Query: 138 ---NAMISGYAKNGYAEEAVKLFPK------WMDYY----------------IGKSEYR- 171
NAMISGY ++G+ E+A++LF K ++D+Y +GK +
Sbjct: 341 APWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHAR 400
Query: 172 --------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEW-S 221
N V ++ + + YAKCGS++ F+R D+D++ ++++ Y EW
Sbjct: 401 AIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDK 460
Query: 222 AFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A F + ++ + + + L +L LE G+ VHG + K+GL+++
Sbjct: 461 AIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDK-------- 512
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+ +A++ YAK G +A K+F + + + + T +I +A+
Sbjct: 513 --------CIESALVDMYAKCGCLGDAKKVFNRISN---------ADTVSWTAIIAGHAQ 555
Query: 338 CGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQ 392
G VD A F R + + + V + GL EEG F ++K +G+ P +
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEME 615
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA +VDLL+R G+ N A +FI MP+E V + LL A ++
Sbjct: 616 HYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRV 658
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 119/298 (39%), Gaps = 63/298 (21%)
Query: 164 YIGKSEYRNN---VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE- 219
++ KS++ N+ V++N V Y+KC +D A FD+ ++ + +I G +
Sbjct: 93 FLLKSKFSNHHSLVLLNHV-AHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGL 151
Query: 220 -WSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDL 271
F F + S ++ Y L L+ +E G +VH ++ G S
Sbjct: 152 FLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTA 211
Query: 272 LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------- 312
L+++ A + + NV WNAMI+G+ N +A LF + M
Sbjct: 212 LLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPD 271
Query: 313 -DYYIGKSE----------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+IG ++ +N +V T LIDM +KCGS+ A F+
Sbjct: 272 AQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFN 331
Query: 350 RTLDKDVVMR-----SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ R +AM GY G E+ LF + ++ I H Y V + +A
Sbjct: 332 SHF---ITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIA 386
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 173/414 (41%), Gaps = 117/414 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGK 167
N+++SGYA+ G E ++L K + +I +
Sbjct: 216 NSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILR 275
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGS 225
+ + + T LI MY KCG+V+ A F+ + KDV+ +AMI G ++ + A
Sbjct: 276 AGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTV 335
Query: 226 FDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
F +L + + L +L G VHG++++ ++L+ + L+++ A
Sbjct: 336 FRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAK 395
Query: 279 CRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP----------------- 309
C + + ++ WNA++SG+A+NG+ +A+ LF
Sbjct: 396 CGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSL 455
Query: 310 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
KW+ ++ KS ++++T L+DMY+KCG + A FDR +D+
Sbjct: 456 LQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDL 515
Query: 357 VMRSAMTVGYGLHGLGE-----------------------------------EGWVLFHH 381
V S++ GYG HG GE +G FH
Sbjct: 516 VSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHS 575
Query: 382 IRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ K GIEPR +H A +VDLL+RAG A+ F M + + V LL A +
Sbjct: 576 MTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACR 629
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/466 (21%), Positives = 186/466 (39%), Gaps = 95/466 (20%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSR- 66
P+ T P ++KAC +L G H ++ + DG + + L + +S+
Sbjct: 46 PDAHTFPSLVKACTSLDLFSHGLSFHQRV---------IVDGYSSDSYIATSLINFYSKF 96
Query: 67 -TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
SA FD + + T + C + G E D+ S+
Sbjct: 97 GHNQSARKVFDTMDDRNVVPWTTMIGC-----YTRAG--------------EHDVAFSMY 137
Query: 126 AVCR---YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
+ R QP+ ++SG E V L + + + + + ++V + +++
Sbjct: 138 NIMRRQGIQPSSVTMLGLLSGVL------ELVHL--QCLHACVIQYGFGSDVALANSMLN 189
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-------LHEWSAFGSFDGLLSNEEN 235
+Y KCG V+ A F+ +DV+ ++++ GY + + DG+ +++
Sbjct: 190 VYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQT 249
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---C------------R 280
+G+ + + L GK+VHG +++ GLE +S + SL + C
Sbjct: 250 -FGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY-------------------------- 314
+V W AMISG +N A+ AV +F + +
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGT 368
Query: 315 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
YI + + ++ L+ MYAKCG ++ + FDR +D+V +A+ G+ +G
Sbjct: 369 SVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNG 428
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
+ +LF+ +RK P ++ A G + H K+I N
Sbjct: 429 HLCKALLLFNEMRKARQRPDSITVVSLLQACASIG-ALHQGKWIHN 473
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 137/340 (40%), Gaps = 107/340 (31%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD-----G 228
V T LI +Y+KCG V+ A FD D+V +A+I GY ++ S+ F G
Sbjct: 249 VLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLG 308
Query: 229 LLSNEE---------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV- 278
L N + +G L C +HGF++K G S + ++T +
Sbjct: 309 LWPNSSTLVALIPVHSPFGHDLLAQC----------LHGFVLKSGFTANSPVSTAITTLH 358
Query: 279 CRYQ------------PNVTL--WNAMISGYAKNGYAEEAVKLFP--------------- 309
CR P T+ WNAMISGYA+NG E AV LF
Sbjct: 359 CRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITIS 418
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
KW+ I + + NV V T LIDMYAKCGS+ A F+ +K
Sbjct: 419 STLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNK 478
Query: 355 DVVMRSAMTVGYGLHGLG-----------------------------------EEGWVLF 379
+VV +AM GYGLHG G EEGW +F
Sbjct: 479 NVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVF 538
Query: 380 HHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+ + I P +H +VDLL RAG AF+ I P
Sbjct: 539 RSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFP 578
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 45/162 (27%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAV-CRYQ------------PNVTLR--NAMISGYAK 146
+ +HGF++K G S + ++T + CR P T+ NAMISGYA+
Sbjct: 332 AQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQ 391
Query: 147 NGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVIV 176
NG E AV LF KW+ I + + NV V
Sbjct: 392 NGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYV 451
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
T LIDMYAKCGS+ A F+ +K+VV +AMI GYGLH
Sbjct: 452 MTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLH 493
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 160/393 (40%), Gaps = 97/393 (24%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P + +A I+ A++ ++A K+ ++ S + + ++ LI +Y KCGSV
Sbjct: 49 PTPRVYHAFITACAQSKNLDDARKIHA-----HLASSRFAGDAFLDNSLIHLYCKCGSVV 103
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYG-------TALD 242
A FD+ +KD+V +++I GY ++ A G G+L G A+
Sbjct: 104 EAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVG 163
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTL 287
D G +H +K + L+ + A C N
Sbjct: 164 AYADSGI---GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS 220
Query: 288 WNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIG 317
WNA+ISG+A+ G E A+ +F KW+ ++
Sbjct: 221 WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMI 280
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS + V ++DMYAK GS+ A F+R L+KD+V ++M + +GLG+E
Sbjct: 281 KSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVS 340
Query: 378 LFHHIRKHGI-----------------------------------EPRHQHYARVVDLLA 402
F +RK GI EP +HY VVDLL
Sbjct: 341 HFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLG 400
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG N+A FI MP+E +V ALL+A ++
Sbjct: 401 RAGLLNYALVFIFKMPMEPTAAVWGALLAACRM 433
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 136/592 (22%), Positives = 219/592 (36%), Gaps = 164/592 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFD-----RTIV-FL 58
VAP+ T ++LKAC L L +G ++H G + L D R++ L
Sbjct: 132 VAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDAL 191
Query: 59 DLYH-LWSRTEWSAFGSFDGLLSNEE--------------------NEYGTALDCSCDLE 97
+H + R S + G + NE+ Y + +
Sbjct: 192 RFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAIT 251
Query: 98 FLEQGKIVHGFMIK-------------LGLELESDLLISLTAVCRYQPNVTLR--NAMIS 142
L + +H IK + + ++D L+ PN T++ NAM+
Sbjct: 252 CLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMV 311
Query: 143 GYAKNGYAEEAVKLFPKWMDYYIG------------------------------KSEYRN 172
G + G EA++LF IG KS +
Sbjct: 312 GLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDV 371
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLL 230
+V V ++D+Y KC ++ A + F +D V +A+I +E + +L
Sbjct: 372 DVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEML 431
Query: 231 ----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY----- 281
++ YG+ L L+ LE G +VHG IK GL L D +S T V Y
Sbjct: 432 RYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGL--DAFVSSTVVDMYCKCGM 489
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY--------------- 314
+ WN++ISG++ N +EEA K F + +D
Sbjct: 490 ITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDT 549
Query: 315 ---------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
I K E + +++ L+DMYAKCG++ + + F++ D V
Sbjct: 550 CANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSW 609
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------------------- 391
+AM GY LHG G E +F +++ + P H
Sbjct: 610 NAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTS 669
Query: 392 --------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+H+A +VD+L R+ A KFI +MP+E + + LLS KI
Sbjct: 670 RYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKI 721
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 118/315 (37%), Gaps = 66/315 (20%)
Query: 127 VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
V + P + N ++ YA+ G A A +F +R+ V NT+L YA
Sbjct: 32 VSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVM--------PHRDTVSWNTMLT-AYAH 82
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSC- 245
G A F D DVV +A++ GY + F G LS E G A D +
Sbjct: 83 AGDTGAAASLFGAMPDPDVVSWNALLSGYC--QRGMFRDSVG-LSVEMARRGVAPDRTTL 139
Query: 246 --------DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------Q 282
LE L G +H +K GLE++ L+ + CR +
Sbjct: 140 AVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGE 199
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------- 317
N W A I+G +N ++LF + +G
Sbjct: 200 RNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQL 259
Query: 318 -----KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
K+++ + +V T ++D+YAK S+ A F + V +AM VG GLG
Sbjct: 260 HAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLG 319
Query: 373 EEGWVLFHHIRKHGI 387
E LF + + GI
Sbjct: 320 AEALQLFQFMTRSGI 334
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 159/390 (40%), Gaps = 91/390 (23%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P + +A I+ A++ ++A K+ ++ S + + ++ LI +Y KCGSV
Sbjct: 49 PTPRVYHAFITACAQSKNLDDARKIHG-----HLASSRFEGDAFLDNSLIHLYCKCGSVV 103
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYG----TALDCSC 245
A FD+ KD+V +++I GY ++ A G G+L G + L +
Sbjct: 104 EAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163
Query: 246 DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLWNA 290
G +H +K + L+ + A C N WNA
Sbjct: 164 AYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNA 223
Query: 291 MISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSE 320
+ISG+A+ G E A+ +F KW+ ++ KS
Sbjct: 224 LISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSR 283
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ V ++DMYAK GS+ A F+R L+KD+V ++M + +GLG+E F
Sbjct: 284 QKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343
Query: 381 HIRKHGI-----------------------------------EPRHQHYARVVDLLARAG 405
+RK GI EP +HY VVDLL RAG
Sbjct: 344 EMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAG 403
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
N+A FI MP+E +V ALL+A ++
Sbjct: 404 LLNYALVFIFKMPMEPTAAVWGALLAACRM 433
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 152/365 (41%), Gaps = 99/365 (27%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFD 227
Y +++ V + LIDMY+KCG ++ A FD +++VV ++MI GY +E + A F
Sbjct: 117 YGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFK 176
Query: 228 GLLSNEENEY---------------GTALDCSCDLEFLEQGKIVHGFMIKLGLE---LES 269
L +E +Y G + + + VHG +K G E
Sbjct: 177 EFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVG 236
Query: 270 DLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------- 309
+ L+ A C + +V WN++I+ YA+NG + EA LF
Sbjct: 237 NTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEV 296
Query: 310 -----------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
K + + K E +N++V T ++DMY KCG V++A
Sbjct: 297 RYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARK 356
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------- 391
FDR K+V + M GYG+HG G+E +F+ + + GI+P +
Sbjct: 357 AFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGL 416
Query: 392 ---------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
+HY+ +VDLL RAGY A+ I M ++ V +LL
Sbjct: 417 LKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLL 476
Query: 431 SAWKI 435
A +I
Sbjct: 477 GACRI 481
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 112/297 (37%), Gaps = 87/297 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LV-----C-------YL 46
PN T P +K+C +L L G ++H Q F G+ L+ C L
Sbjct: 84 PNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKL 143
Query: 47 FDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSNEENEY---------------G 87
FD + +R +V + Y R + F F L +E +Y G
Sbjct: 144 FDEIPERNVVSWTSMISGYVQNERAREAVF-LFKEFLLVDETDYDEIVGVGVGVDSVLLG 202
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC------------RYQP 132
+ + + VHG +K G E + L+ A C +
Sbjct: 203 CVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEET 262
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFP-------------------------------KWM 161
+V N++I+ YA+NG + EA LF K +
Sbjct: 263 DVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCI 322
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ K E +N++V T ++DMY KCG V++A FDR K+V + M+ GYG+H
Sbjct: 323 HDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMH 379
>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 125/513 (24%), Positives = 198/513 (38%), Gaps = 128/513 (24%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSA 71
T P VLKAC LPSL ++H I GF +F +T +D+Y ++
Sbjct: 30 TFPFVLKACAKLPSLEDATKLHSHILLTGFQA-----HVFVQT-ALVDVY-----SKCCC 78
Query: 72 FGS----FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
F S FD + + + + C ++Q + M LGLEL S A
Sbjct: 79 FHSARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLAS 138
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
C +++ YI K ++ + ++ MY +
Sbjct: 139 CSLPQGLSIHG-------------------------YITKLGLDLHLPLANSIMSMYIRL 173
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEWSAFGSFDGLLSNEENEYGTALD 242
+D A F K +V + ++ GY ++ F ++ L
Sbjct: 174 NQIDGALSVFYTLHQKSIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLI 233
Query: 243 CSCDLE-FLEQGKIVHGFMIKLGLELES---DLLISLTAVCR------------YQPNVT 286
C L L +VH ++K G + + +LL+++ A C+ ++ +V
Sbjct: 234 SCCKLSGNLLLAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVF 293
Query: 287 LWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYI 316
LW +MISGYA+ GY EA+ LF + ++ YI
Sbjct: 294 LWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYI 353
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
+ +++ V T LI M+ KCGS+ A F+R +KD+ + SAM GY +HG+G+E
Sbjct: 354 LLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEAL 413
Query: 377 VLFHHIRKH-------------------------------------GIEPRHQHYARVVD 399
LFH ++ GIEP QHY+ +VD
Sbjct: 414 NLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVD 473
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
LL RAGY A + I MP+ ++ V LSA
Sbjct: 474 LLGRAGYVELALRTIQEMPVLVQARVWAPFLSA 506
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 145/581 (24%), Positives = 218/581 (37%), Gaps = 171/581 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRT-- 54
M A P+ T P LKAC LPS G HG I GF VC ++ R+
Sbjct: 140 MLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGS 199
Query: 55 -----IVF-------LDLYHLWS------------RTEWSAFGSFDGLL----SNEENEY 86
+VF +D W+ RT F ++ +NE ++
Sbjct: 200 LEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDI 259
Query: 87 GTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG 143
+ L L+ L Q K +H + I+ G ++ VC NA+I
Sbjct: 260 ISIVNILPACASLKALPQTKEIHSYAIRNGTFADA-------FVC---------NALIDT 303
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD----R 199
YAK G ++AV +F M++ +V+ ++ Y + G A F
Sbjct: 304 YAKCGSMKDAVNVF-NVMEF--------KDVVSWNAMVTGYTQSGKFGAAFELFKNMRKE 354
Query: 200 TLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLL--SNEENEYG--TALDCSCDLEFLEQG 253
+ DV+ SA+I GY + A +F ++ +E N + L L L QG
Sbjct: 355 NIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQG 414
Query: 254 KIVHGFMIKLGLE---------------LESDLLISLTAVCRY--------------QPN 284
H + +K L + + LI + + CR + N
Sbjct: 415 METHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERN 474
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMD------------------------------- 313
V W MI GYA+ G + +A+KLF + +
Sbjct: 475 VVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQI 534
Query: 314 --YYIGKSEYRNNV-IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
Y EY ++V V LIDMY+KCG VD A FD ++ V ++M GYG+HG
Sbjct: 535 HAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHG 594
Query: 371 LGEEGWVLFHHIRKHGIEP------------------------------------RHQHY 394
G+E +F ++K G P QHY
Sbjct: 595 RGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHY 654
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A V+DLLAR+G + A+K I MP+E ++ ALLSA ++
Sbjct: 655 ACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRV 695
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 149/365 (40%), Gaps = 92/365 (25%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLID---MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
K + + K+ +++ V T I+ + S+ A FD+ D+V+ + M GY
Sbjct: 37 KQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGY 96
Query: 216 G-----LHEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
L ++ F F GL ++ + + L + LE+G+ +H IKLGL
Sbjct: 97 ARTDTPLRAFTLFTQILFSGLFPDDYT-FPSLLKACASCKALEEGRQLHCLAIKLGLSEN 155
Query: 269 ---SDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP---- 309
LI++ C ++P V +NAMI+GYA+ EA+ LF
Sbjct: 156 VYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQA 215
Query: 310 --------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
KWM Y+ K+ + V V+T LIDMYAKCGS+D
Sbjct: 216 RNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDD 275
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------ 391
A F+ +D SAM + Y +HG G + LF +RK G EP
Sbjct: 276 AVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSH 335
Query: 392 ------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
+HY +VDLL RAG A++FI+ +PI + R
Sbjct: 336 TGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWR 395
Query: 428 ALLSA 432
LLSA
Sbjct: 396 TLLSA 400
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 98/226 (43%), Gaps = 52/226 (23%)
Query: 45 YLFDGLFDRTIVFLD-LYHLWSRTE--WSAFGSFDGLLSN----EENEYGTALDCSCDLE 97
+LFD + IV + + ++RT+ AF F +L + ++ + + L +
Sbjct: 76 HLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCK 135
Query: 98 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMIS 142
LE+G+ +H IKLGL LI++ C ++P V NAMI+
Sbjct: 136 ALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMIT 195
Query: 143 GYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRN 172
GYA+ EA+ LF KWM Y+ K+ +
Sbjct: 196 GYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNR 255
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V V+T LIDMYAKCGS+D A F+ +D SAMI+ Y +H
Sbjct: 256 FVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIH 301
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 150/595 (25%), Positives = 228/595 (38%), Gaps = 164/595 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLD 59
M+ + P+ T P V+ +C + L +G VH +GF Y+ + L D F+D
Sbjct: 112 MREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVD 171
Query: 60 L-------YHLWSRTEWSAFGSFDGLLSN-----------EENEYGTALDC--------S 93
L + +R S G SN + G DC +
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231
Query: 94 C-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR--------------- 137
C L +++G VHG + K+G+ D++I + Y LR
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIA--GDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSV 289
Query: 138 --NAMISGYAKNGYAEEAVKLFPKWMD------------------------------YYI 165
N MI GYA+ G E +VKLF +D Y I
Sbjct: 290 TWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLI 349
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG- 224
G S + + + +LIDMYAKCG + A FD T KD V +++I GY + G
Sbjct: 350 G-SGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGL 408
Query: 225 -SFDGLLSNEENEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
SF + + + T L L + QG+ +H +IK G E E + L+ + A
Sbjct: 409 ESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYA 468
Query: 278 VC------------RYQPNVTLWNAMISGYAK-----------NGYAEE----------- 303
C ++ WN +I+ N E
Sbjct: 469 KCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLG 528
Query: 304 --------AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
AV+ K + YI KS + +NV + LI+MY+KCGS++ F +KD
Sbjct: 529 ILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKD 588
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI---------------------------- 387
VV +A+ +G++G G++ F + G+
Sbjct: 589 VVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFD 648
Query: 388 --------EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
EPR +HYA VVDLLAR+G A +FI++MP++ S+ ALLSA +
Sbjct: 649 RMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACR 703
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 36/239 (15%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
+GL+ +E G CS L QGK +HG++ K G E NV
Sbjct: 517 EGLMPDEATVLGILPMCSL-LAVRRQGKEIHGYIFKSGFE----------------SNVP 559
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+ NA+I Y+K G E +K+F K+M +V+ T LI + G A
Sbjct: 560 IGNALIEMYSKCGSLENCIKVF-KYMK--------EKDVVTWTALISAFGMYGEGKKALK 610
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE-FLEQGK 254
F V+ S + + F + E + + +LE +E
Sbjct: 611 AFQDMELSGVLPDSVAFIAF------IFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYA 664
Query: 255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313
V + + GL +++ I + +P+ +LW A++S G A ++ K ++
Sbjct: 665 CVVDLLARSGLLAQAEEFILSMPM---KPDASLWGALLSACRARGNTNIAQRVSKKILE 720
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 125/481 (25%), Positives = 180/481 (37%), Gaps = 138/481 (28%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL-------------ISLTAVCRYQPN 133
T L L FLE GK +H +++ GLE+++ L+ I+ + PN
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPN 312
Query: 134 VTLRN--AMISGYAKNGYAEEAVKLFPKWMDY---------------------------- 163
+ + ++SGY +N +EA++LF +
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQV 372
Query: 164 --YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----- 216
Y K+ N+ V LIDMYAKC + A FD DVV+ +AMI GY
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQ 432
Query: 217 --LHEWSAFGSFDG----LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-- 268
LHE A F L+ + + L S L L K +HG M K GL L+
Sbjct: 433 WELHE--ALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIF 490
Query: 269 -SDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
LI + + C ++ +WN+M +GY + EEA+ LF
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSR 550
Query: 309 --PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
P + + K N + L+DMYAKCGS + A
Sbjct: 551 ERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAH 610
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------------- 372
FD +DVV +++ Y HG G
Sbjct: 611 KAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAG 670
Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
E+G F + + GIEP +HY +V LL RAG N A + I MP + V R+LL
Sbjct: 671 LVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLL 730
Query: 431 S 431
S
Sbjct: 731 S 731
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 157/407 (38%), Gaps = 102/407 (25%)
Query: 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA----------VCRYQ 131
E+ L + L +VHG +I GLEL+ S++LI+L + V
Sbjct: 46 EFARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKM 105
Query: 132 P--NVTLRNAMISGYAKNGYAEEAVKLF-----------------------------PKW 160
P N+ + M+S +G EE++ +F +W
Sbjct: 106 PERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW 165
Query: 161 MDY----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
M + ++ KS + +V V T+LID Y K G++D A + FD +K V + MI G
Sbjct: 166 MVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCV 225
Query: 217 L--HEWSAFGSFDGLLSNEENEYG----TALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
+ + F L+ + G T L L FLE GK +H +++ GLE+++
Sbjct: 226 KMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDAS 285
Query: 271 L---LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY- 314
L LI C N+ W ++SGY +N +EA++LF +
Sbjct: 286 LMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFG 345
Query: 315 -----------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
Y K+ N+ V LIDMYAKC + A
Sbjct: 346 LKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDAR 405
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLG---EEGWVLFHHIRKHGIEP 389
FD DVV+ +AM GY G E +F +R I P
Sbjct: 406 KVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRP 452
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 104/282 (36%), Gaps = 67/282 (23%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNV 134
L S L L K +HG M K GL L+ LI + + C ++
Sbjct: 461 LRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 135 TLRNAMISGYAKNGYAEEAVKLF---------PKWMDY---------------------Y 164
+ N+M +GY + EEA+ LF P +
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSA 222
+ K N + L+DMYAKCGS + A FD +DVV +++I Y H A
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKA 640
Query: 223 FGSFDGLLSNE-ENEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
+ ++S E Y T L +E G M++ G+E E++ + + ++
Sbjct: 641 LQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSL 700
Query: 279 C----------------RYQPNVTLWNAMISGYAKNGYAEEA 304
+P +W +++SG AK G E A
Sbjct: 701 LGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELA 742
>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
Length = 773
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 130/524 (24%), Positives = 203/524 (38%), Gaps = 126/524 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V PN T L+AC L L G +HG + +G + D +V L+ ++S
Sbjct: 216 VRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVG---------IGDSPMVISALFSMYS 266
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI----VHGFMIKLGLELESDLL 121
+ Y T C+ LE E+ + + G + GL E+ L
Sbjct: 267 KC------------------YSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMEL 308
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
QP+ L + ++SG NG K I K + ++V++ LI
Sbjct: 309 FQQMMESGLQPDEILVSCVLSGLGNNGNVHGG-----KTFHAVITKRNFGDSVLIGNALI 363
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGLLSNEENEYGT 239
MY K VD A F +D + M+VGY + + + ++ E+
Sbjct: 364 SMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWC 423
Query: 240 ALDC------SCD-LEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC---------- 279
D SC L L G+ H + IK L+ +S ++LI + C
Sbjct: 424 VADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIF 483
Query: 280 ---RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------------ 312
+ + +V WN +IS YA G++ A+ L+ + +
Sbjct: 484 GLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVAL 543
Query: 313 ------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
Y+ + + +V +NT LIDMYAKCG + +A FD L DVV + M GY
Sbjct: 544 ERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGY 603
Query: 367 GLHG-----------------------------------LGEEGWVLFHHIRKHGIEPRH 391
G+HG L EEG +F + K+ +EP
Sbjct: 604 GMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGKYSLEPNL 663
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDLL ++G+ A ++ MPIE + LLSA K+
Sbjct: 664 KHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKL 707
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 55/250 (22%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG------- 224
++V V + L+ MYA+CG+V A F+ ++DVV +A+I G + S G
Sbjct: 148 DSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEM 207
Query: 225 ---SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAV 278
+ DG + + L+ L+ L G+ +HG+++K+G+ + L S+ +
Sbjct: 208 VRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSK 267
Query: 279 CRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------ 314
C + +V W ++I Y + G EA++LF + M+
Sbjct: 268 CYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCV 327
Query: 315 ------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
I K + ++V++ LI MY K VD A F +D
Sbjct: 328 LSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDA 387
Query: 357 VMRSAMTVGY 366
+ M VGY
Sbjct: 388 DSWNLMVVGY 397
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 187/483 (38%), Gaps = 137/483 (28%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------Q 131
AL L LE GK++HGF K E+ SD+ + V Y +
Sbjct: 109 ALKACAGLRMLELGKVIHGFA-KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQR 167
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKW--MDYYI------------------------ 165
P+ L +M++GY +N EEA+ LF + MD +
Sbjct: 168 PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSC 227
Query: 166 -----GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ E+ ++ + L+++YAK G +A F + +KDV+ S MI Y +E
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 287
Query: 221 S--AFGSFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDL 271
+ A F ++ E N +AL LE+GK +H + G EL+ S
Sbjct: 288 ANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTA 347
Query: 272 LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----- 314
LI + C + +V W A++SGYA+NG A +++ +F +
Sbjct: 348 LIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPD 407
Query: 315 -------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
Y+ +S + +NV V LI++Y+KCGS+ A F
Sbjct: 408 AVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFK 467
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG----------------------- 386
+ +DVV+ S+M YG+HG G E +F + K+
Sbjct: 468 GMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVE 527
Query: 387 --------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+ P +H+ +VDLL R G A I MPI V ALL A
Sbjct: 528 EGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGA 587
Query: 433 WKI 435
+I
Sbjct: 588 CRI 590
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 92/359 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
P L N MI G+A +G +++L+ K M+ + ++
Sbjct: 780 NPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKV 839
Query: 171 ----------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
N++ V+ L+DMYAKCG ++ A + FD+ +D+V ++MI GY + +
Sbjct: 840 IHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGY 899
Query: 221 SA--FGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
++ G FD G++ N + L C +L L +G+ H ++I+ G E D+L+
Sbjct: 900 NSETLGFFDLMRSSGVIPNRVSILSVLLACG-NLGALRKGEWFHSYVIQTGFEF--DILV 956
Query: 274 SLTAVCRYQ-----------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316
+ + Y ++ W+AMI+ Y +G+ +A+ LF + +
Sbjct: 957 ATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMV---- 1012
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
K+ R + + T ++ + G ++ M+F ++ V+ R
Sbjct: 1013 -KAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIAR----------------- 1054
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +YA +VDLL RAG + A I NMP+E S+ +LL A +I
Sbjct: 1055 -------------KLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRI 1100
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 108/278 (38%), Gaps = 56/278 (20%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EWSAFGS 225
K+ ++ T L +YAKC S+ A FD T +V + ++ + Y +W
Sbjct: 29 KTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLR 88
Query: 226 FDGLLSNEENE------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
L+ E AL L LE GK++HGF K E+ SD+ + V
Sbjct: 89 LFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA-KKNDEIGSDMFVGSALVE 147
Query: 280 RY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK--WMDYY----- 315
Y +P+ LW +M++GY +N EEA+ LF + MD
Sbjct: 148 LYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPV 207
Query: 316 ------------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ + E+ ++ + L+++YAK G +A F +
Sbjct: 208 TLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM 267
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+KDV+ S M Y + E LFH + + EP
Sbjct: 268 PEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEP 305
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 150/595 (25%), Positives = 228/595 (38%), Gaps = 164/595 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLD 59
M+ + P+ T P V+ +C + L +G VH +GF Y+ + L D F+D
Sbjct: 112 MREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVD 171
Query: 60 L-------YHLWSRTEWSAFGSFDGLLSN-----------EENEYGTALDC--------S 93
L + +R S G SN + G DC +
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231
Query: 94 C-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR--------------- 137
C L +++G VHG + K+G+ D++I + Y LR
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIA--GDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSV 289
Query: 138 --NAMISGYAKNGYAEEAVKLFPKWMD------------------------------YYI 165
N MI GYA+ G E +VKLF +D Y I
Sbjct: 290 TWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLI 349
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG- 224
G S + + + +LIDMYAKCG + A FD T KD V +++I GY + G
Sbjct: 350 G-SGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGL 408
Query: 225 -SFDGLLSNEENEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
SF + + + T L L + QG+ +H +IK G E E + L+ + A
Sbjct: 409 ESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYA 468
Query: 278 VC------------RYQPNVTLWNAMISGYAK-----------NGYAEE----------- 303
C ++ WN +I+ N E
Sbjct: 469 KCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLG 528
Query: 304 --------AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
AV+ K + YI KS + +NV + LI+MY+KCGS++ F +KD
Sbjct: 529 ILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKD 588
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI---------------------------- 387
VV +A+ +G++G G++ F + G+
Sbjct: 589 VVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFD 648
Query: 388 --------EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
EPR +HYA VVDLLAR+G A +FI++MP++ S+ ALLSA +
Sbjct: 649 RMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACR 703
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 36/239 (15%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
+GL+ +E G CS L QGK +HG++ K G E NV
Sbjct: 517 EGLMPDEATVLGILPMCSL-LAVRRQGKEIHGYIFKSGFE----------------SNVP 559
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+ NA+I Y+K G E +K+F K+M +V+ T LI + G A
Sbjct: 560 IGNALIEMYSKCGSLENCIKVF-KYMK--------EKDVVTWTALISAFGMYGEGKKALK 610
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE-FLEQGK 254
F V+ S + + F + E + + +LE +E
Sbjct: 611 AFQDMELSGVLPDSVAFIAF------IFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYA 664
Query: 255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313
V + + GL +++ I + +P+ +LW A++S G A ++ K ++
Sbjct: 665 CVVDLLARSGLLAQAEEFILSMPM---KPDASLWGALLSACRARGNTNIAQRVSKKILE 720
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 178/424 (41%), Gaps = 123/424 (29%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF------------------------PKWMDYYIG 166
+ N+ MISGYA A+EA+ +F P+++D G
Sbjct: 175 ERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDS--G 232
Query: 167 KSEY----RNNVI----VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL- 217
K + +N V+ V L+ MYAKCG+++ + M F+ DK+ + SA+I GY
Sbjct: 233 KQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQA 292
Query: 218 ---HEWSAFGS---FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE--- 268
H+ S + G + +E G CS D+ +E+GK HG+++K G E +
Sbjct: 293 GDSHKALKLFSKMHYAGFVPSEFTLVGVLKACS-DVAAIEEGKQTHGYLLKSGYETQIYT 351
Query: 269 SDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316
+ L+ + A + +P++ LW ++I+GY +NG EEA+ ++ + I
Sbjct: 352 ATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKI 411
Query: 317 ----------------------GKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPM 346
GK + + + + L MYAKCGS++ +
Sbjct: 412 LPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVL 471
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------- 391
F R L +D+V +AM G +G G E LF +R G +P H
Sbjct: 472 IFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGI 531
Query: 392 ---------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
+HYA +VD+L+RAG N A +FI + I+ + + R LL
Sbjct: 532 VKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILL 591
Query: 431 SAWK 434
A +
Sbjct: 592 PACR 595
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 142/327 (43%), Gaps = 66/327 (20%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
K+ ++V V + L++ Y K G V A FDR ++++V + MI GY + + A G
Sbjct: 140 KTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALG 199
Query: 225 SFD--GLLSNEENEYG-----TALDCSCDLEFLEQGKIVHGFMIKLG-LELESDL--LIS 274
F L+ NE+ +AL C EF++ GK VH ++K G LE S L L++
Sbjct: 200 VFGLMRLVEGNLNEFVFTSVLSALVCP---EFVDSGKQVHCVVVKNGVLEFVSVLNALVT 256
Query: 275 LTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY-------- 314
+ A C N W+A+I+GY++ G + +A+KLF K M Y
Sbjct: 257 MYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSK-MHYAGFVPSEF 315
Query: 315 -----------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
Y+ KS Y + T L+DMYAK G A FD
Sbjct: 316 TLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFL 375
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGY 406
L+ D+V+ +++ GY +G EE ++ ++ I P A V+ + G
Sbjct: 376 LEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGK 435
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAW 433
HA + E LS+R AL + +
Sbjct: 436 QIHARTIKYGLGPE--LSIRSALSTMY 460
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 47/204 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVF-- 57
M A P+ T VLKAC + ++ G + HG + G+ Y L D F
Sbjct: 305 MHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGF 364
Query: 58 -------LDLYHLWSRTEWSAFGSFDGLLSNEENE-----YG---------------TAL 90
D W++ G + N +NE YG + L
Sbjct: 365 TGDARKGFDFLLEPDLVLWTSI--IAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVL 422
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVT 135
+L LEQGK +H IK GL E + L ++ A C Q ++
Sbjct: 423 KACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIV 482
Query: 136 LRNAMISGYAKNGYAEEAVKLFPK 159
NAMISG ++NG+ EA++LF +
Sbjct: 483 SWNAMISGLSQNGHGREALELFEE 506
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 156/390 (40%), Gaps = 91/390 (23%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P + + I+ A++ E+A K+ ++G S + + ++ LI MY KC SV
Sbjct: 49 PTPRVYRSFITACAQSKNLEDARKIHA-----HLGSSRFAGDAFLDNSLIHMYCKCRSVL 103
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYG----TALDCSC 245
A FD+ KD+V +++I GY ++ A G G+L G + L +
Sbjct: 104 DARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163
Query: 246 DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLWNA 290
G+ +H +K G + L+ + A C N WNA
Sbjct: 164 AYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNA 223
Query: 291 MISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSE 320
+ISG+A+ G E A+ F KW+ ++ KS
Sbjct: 224 LISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSR 283
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ V L+DMYAK GS+ A FDR +KD+V ++M + +GLG+E F
Sbjct: 284 QKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343
Query: 381 HIRKHGI-----------------------------------EPRHQHYARVVDLLARAG 405
+RK G+ EP HY VV LL RAG
Sbjct: 344 EMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAG 403
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
N+A FI MP+E +V ALL+A ++
Sbjct: 404 LLNYALVFIFKMPMEPTAAVWGALLAACRM 433
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 139/332 (41%), Gaps = 91/332 (27%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNE 233
V T L+ +Y+KCG +D A FDR + D+V +A+I GY ++ S+ F L ++
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASG 308
Query: 234 ENEYGTALDCSCDL------EFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRY----- 281
+ L + E L + +H F++K L+ ++ + +LT + CR
Sbjct: 309 WRPNSSTLVAVIPVYSPFGHELL--ARCLHAFVVKARLDADALVSTALTTLYCRLNDMES 366
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
+ + WNAMISGYA+NG E AV LF
Sbjct: 367 ARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAH 426
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
KW+ I K + NV V T LIDMYAKCGS+ A FDR +K+VV +AM
Sbjct: 427 LGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAM 486
Query: 363 TVGYGLHGLGEEGWVLFHHIR------------------KHG------------------ 386
GYGLHG G E L+ + HG
Sbjct: 487 ISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYR 546
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
I P +H +VDLL RAG N A + I P
Sbjct: 547 ITPGIEHCTCMVDLLGRAGKLNEALELISEFP 578
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 155/363 (42%), Gaps = 95/363 (26%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
++ K+ ++ NV V +VLIDMYAK G + LA R + DVV +AMI GY H+ +
Sbjct: 488 HVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFS- 546
Query: 224 GSFDGLLSNEENEY----------GTALDCSCDLEFLEQGKIVHG--FMIKLGLELE-SD 270
+ L EE EY +A+ + L QG+ +H + G +L ++
Sbjct: 547 ---EALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN 603
Query: 271 LLISLTAVC-RYQ-----------PNVTLWNAMISGYAKNGYAEEAVKLFPKWM------ 312
LISL A C R Q N WN+++SG A++GY EEA+++F + +
Sbjct: 604 ALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV 663
Query: 313 ------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+ K+ Y + V+ LI +YAK GS+ A F
Sbjct: 664 NMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREF 723
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------- 391
+ +++V+ +AM GY HG G E LF ++ GI P H
Sbjct: 724 NDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVK 783
Query: 392 -------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+HY VVDLL RAG + A ++I MPI + R LLSA
Sbjct: 784 EGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSA 843
Query: 433 WKI 435
I
Sbjct: 844 CVI 846
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 112/487 (22%), Positives = 188/487 (38%), Gaps = 91/487 (18%)
Query: 6 VAPNGCTPPLVLKACVALP-SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLW 64
+ PNG T VLKACV + +VH + F GF L L +DLY
Sbjct: 155 ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLL------IDLY--- 205
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
S +G + + + + +C C + + ++ G + + GLE E+ LL
Sbjct: 206 ---------SKNGYIESAKKVF----NCICMKDIVTWVAMISG-LSQNGLEEEAILLFCD 251
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP--KWMDYYIGKSEYRNNVIVNTVLID 182
P + ++++S K ++LF + + + K + + V L+
Sbjct: 252 MHASEIFPTPYVLSSVLSASTK-------IQLFELGEQLHCLVIKWGFHSETYVCNGLVA 304
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL----LSNEENE 236
+Y++ + A F +D V +++I G +S A F + L +
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCIT 364
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RY 281
+ L + L +G +H IK G+ + L L+ L + C
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTE 424
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-------------YIG-- 317
N+ LWN M+ Y + ++ ++F P Y Y+G
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484
Query: 318 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
K+ ++ NV V +VLIDMYAK G + LA R + DVV +AM GY H +
Sbjct: 485 IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVR 426
E LF + GI+ + +A + A R G HA + + LS+
Sbjct: 545 FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD--LSIN 602
Query: 427 RALLSAW 433
AL+S +
Sbjct: 603 NALISLY 609
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 154/360 (42%), Gaps = 95/360 (26%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
++ K+ ++ NV V +VLIDMYAK G + LA R + DVV +AMI GY H+ +
Sbjct: 488 HVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFS- 546
Query: 224 GSFDGLLSNEENEY----------GTALDCSCDLEFLEQGKIVHG--FMIKLGLELE-SD 270
+ L EE EY +A+ + L QG+ +H + G +L ++
Sbjct: 547 ---EALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN 603
Query: 271 LLISLTAVC-RYQ-----------PNVTLWNAMISGYAKNGYAEEAVKLFPKWM------ 312
LISL A C R Q N WN+++SG A++GY EEA+++F + +
Sbjct: 604 ALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV 663
Query: 313 ------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+ K+ Y + V+ LI +YAK GS+ A F
Sbjct: 664 NMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREF 723
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------- 391
+ +++V+ +AM GY HG G E LF ++ GI P H
Sbjct: 724 NDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVK 783
Query: 392 -------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+HY VVDLL RAG + A ++I MPI + R LLSA
Sbjct: 784 EGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSA 843
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 112/487 (22%), Positives = 188/487 (38%), Gaps = 91/487 (18%)
Query: 6 VAPNGCTPPLVLKACVALP-SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLW 64
+ PNG T VLKACV + +VH + F GF L L +DLY
Sbjct: 155 ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLL------IDLY--- 205
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
S +G + + + + +C C + + ++ G + + GLE E+ LL
Sbjct: 206 ---------SKNGYIESAKKVF----NCICMKDIVTWVAMISG-LSQNGLEEEAILLFCD 251
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP--KWMDYYIGKSEYRNNVIVNTVLID 182
P + ++++S K ++LF + + + K + + V L+
Sbjct: 252 MHASEIFPTPYVLSSVLSASTK-------IQLFELGEQLHCLVIKWGFHSETYVCNGLVA 304
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL----LSNEENE 236
+Y++ + A F +D V +++I G +S A F + L +
Sbjct: 305 LYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCIT 364
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RY 281
+ L + L +G +H IK G+ + L L+ L + C
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTE 424
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-------------YIG-- 317
N+ LWN M+ Y + ++ ++F P Y Y+G
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ 484
Query: 318 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
K+ ++ NV V +VLIDMYAK G + LA R + DVV +AM GY H +
Sbjct: 485 IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVR 426
E LF + GI+ + +A + A R G HA + + LS+
Sbjct: 545 FSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD--LSIN 602
Query: 427 RALLSAW 433
AL+S +
Sbjct: 603 NALISLY 609
>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
Length = 788
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 132/570 (23%), Positives = 215/570 (37%), Gaps = 160/570 (28%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTIVF 57
P+ P V KAC AL G VHG + G F+ L D G+ D
Sbjct: 127 PDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKV 186
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENE--------------------YGTALDCSCDLE 97
D + W+A G + N NE T L S ++
Sbjct: 187 FDEIPERNVVAWNAL--MVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMG 244
Query: 98 FLEQGKIVHGFMIKLGLELESDLLIS-LTAVCRYQ--------------PNVTLRNAMIS 142
+E+GK H + GLEL++ L S L C+ +V N +IS
Sbjct: 245 GVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLLIS 304
Query: 143 GYAKNGYAEEAVKL------------------------------FPKWMDYYIGKSEYRN 172
GY + G E+A+++ K + Y + + +
Sbjct: 305 GYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFES 364
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
++++ + +DMYAKCGS+ A FD T+ KD+++ + ++ Y E G L
Sbjct: 365 DIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYA--ESGLSGEALRLFYE 422
Query: 233 EENEYGTALDCSCDL---EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+ E + +L L G++ K+ L+++S ++ P + W
Sbjct: 423 MQLESVPPNVITWNLIILSLLRNGQVDEAK--KMFLQMQSSGIV---------PTIVSWT 471
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDY----------------------YIGKSEY----RN 323
M++G +NG +EEA+ K +Y + G+S + RN
Sbjct: 472 TMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRN 531
Query: 324 -----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVL 378
+V + T L+DMYAKCG + A F R L ++ + +AM Y L+G EE L
Sbjct: 532 RLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMAL 591
Query: 379 FHH------------------------------------IRKHGIEPRHQHYARVVDLLA 402
+ + KHG++P +HY +VDLLA
Sbjct: 592 YRSLDDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLA 651
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
AG + A + + MP E + ++LL+
Sbjct: 652 SAGETEKALRLMEEMPYEPDARMIQSLLAT 681
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 53/258 (20%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSF 226
Y N + T L+ YAKC ++++A + F + ++V +A+I GL E + G F
Sbjct: 59 YAKNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMG-F 117
Query: 227 DGLLSNE---ENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC 279
+L +E +N + +C L++ G+ VHG++ K GL+ + L + C
Sbjct: 118 VEMLKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKC 177
Query: 280 RY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
+ NV WNA++ GY +NG EEA++L + +
Sbjct: 178 GVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCL 237
Query: 317 -----------GKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
GK + V I+ T +++ Y K G V+ A M FDR + KDVV
Sbjct: 238 SASANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVV 297
Query: 358 MRSAMTVGYGLHGLGEEG 375
+ + GY GL E+
Sbjct: 298 TWNLLISGYVQQGLVEDA 315
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/512 (23%), Positives = 204/512 (39%), Gaps = 129/512 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
+ ++ P+ T P VLKAC L + G VH + GF +V G++ + V
Sbjct: 289 LHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV 348
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
F D L FD + + + + C + + G+ + LEL
Sbjct: 349 FEDAIKL-----------FDEMPERDVASWNNVISC-----YYQDGQ------PEKALEL 386
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
++ +S ++P+ +IS A+ E K + + +S + + V
Sbjct: 387 FEEMKVS-----GFKPDSVTLTTVISSCARLLDLERG-----KEIHMELVRSGFALDGFV 436
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFD--GL 229
++ L+DMY KCG +++A F++ K+VV ++MI GY L S F D G+
Sbjct: 437 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 496
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 281
+ CS + L+ GK +HG++I+ +E+D+ ++ + + Y
Sbjct: 497 RPTLTTLSSILMACSRSVN-LQLGKFIHGYIIR--NRVEADIFVNSSLIDLYFKCGNIGS 553
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
+ NV WN MISGY K G EA+ +F
Sbjct: 554 AENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQ 613
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
K + +I +S+ N +V L+DMYAKCG+VD A F++ ++D V ++M
Sbjct: 614 LAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSM 673
Query: 363 TVGYGLHGLGEEGWVLFHH------------------------------------IRKHG 386
YG HG E LF I ++G
Sbjct: 674 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 733
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+P +HY+ ++DLL R G A++ + P
Sbjct: 734 FKPAVEHYSCLIDLLGRVGRLREAYEILQRTP 765
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 106/472 (22%), Positives = 185/472 (39%), Gaps = 108/472 (22%)
Query: 27 LMGPRVHGQIFSLG--------------FLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAF 72
L+G +H +I SLG + C+LF +VF + + T W
Sbjct: 212 LLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQS---AKLVFQTIENPLDITLW--- 265
Query: 73 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 132
+GL++ C+ + F+E ++ H + L+ ++ S+ C
Sbjct: 266 ---NGLMAA----------CTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKAC---- 308
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
SG + GY K + ++ KS + +V+V + + MYAKC +
Sbjct: 309 ---------SGLGRVGYG--------KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFED 351
Query: 193 APMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL----LSNEENEYGTALDCSC 245
A FD ++DV + +I Y G E A F+ + + T +
Sbjct: 352 AIKLFDEMPERDVASWNNVISCYYQDGQPE-KALELFEEMKVSGFKPDSVTLTTVISSCA 410
Query: 246 DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLWNA 290
L LE+GK +H +++ G L+ S L+ + C + NV WN+
Sbjct: 411 RLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNS 470
Query: 291 MISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSE 320
MI+GY+ G ++ ++LF K++ YI ++
Sbjct: 471 MIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR 530
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
++ VN+ LID+Y KCG++ A F +VV + M GY G E V+F
Sbjct: 531 VEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFT 590
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+RK G++P + V+ ++ K I N IE +L + ++ A
Sbjct: 591 DMRKAGVKPDAITFTSVLPACSQLAVLEKG-KEIHNFIIESKLEINEVVMGA 641
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/512 (23%), Positives = 205/512 (40%), Gaps = 129/512 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
+ ++ P+ T P VLKAC L + G VH + GF +V G++ + V
Sbjct: 97 LHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV 156
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
F D L FD + + + + C + + G+ + LEL
Sbjct: 157 FEDAIKL-----------FDEMPERDVASWNNVISC-----YYQDGQP------EKALEL 194
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
++ +S ++P+ +IS A+ E K + + +S + + V
Sbjct: 195 FEEMKVS-----GFKPDSVTLTTVISSCARLLDLERG-----KEIHMELVRSGFALDGFV 244
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFD--GL 229
++ L+DMY KCG +++A F++ K+VV ++MI GY L S F D G+
Sbjct: 245 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 304
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 281
+ CS + L+ GK +HG++I+ +E+D+ ++ + + Y
Sbjct: 305 RPTLTTLSSILMACSRSVN-LQLGKFIHGYIIR--NRVEADIFVNSSLIDLYFKCGNIGS 361
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
+ NV WN MISGY K G EA+ +F
Sbjct: 362 AENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQ 421
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
K + +I +S+ N +V L+DMYAKCG+VD A F++ ++D V ++M
Sbjct: 422 LAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSM 481
Query: 363 TVGYGLHGLGEEGWVLFHHIRK------------------------------------HG 386
YG HG E LF +++ +G
Sbjct: 482 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 541
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+P +HY+ ++DLL R G A++ + P
Sbjct: 542 FKPAVEHYSCLIDLLGRVGRLREAYEILQRTP 573
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 101/444 (22%), Positives = 179/444 (40%), Gaps = 101/444 (22%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR-YQP----------- 132
+ L D ++L+QGK++H ++ LGL+ L LI+L C +Q
Sbjct: 8 SLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENP 67
Query: 133 -NVTLRNAMISGYAKNGYAEEAVKLFPKWMDY---------------------------- 163
++TL N +++ KN E +++F + + +
Sbjct: 68 LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKM 127
Query: 164 ---YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GL 217
++ KS + +V+V + + MYAKC + A FD ++DV + +I Y G
Sbjct: 128 VHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQ 187
Query: 218 HEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SD 270
E A F+ + + T + L LE+GK +H +++ G L+ S
Sbjct: 188 PE-KALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 246
Query: 271 LLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP--------- 309
L+ + C + NV WN+MI+GY+ G ++ ++LF
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 306
Query: 310 ---------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
K++ YI ++ ++ VN+ LID+Y KCG++ A F
Sbjct: 307 TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF 366
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSN 408
+VV + M GY G E V+F +RK G++P + V+ ++
Sbjct: 367 QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLE 426
Query: 409 HAFKFIMNMPIELRLSVRRALLSA 432
K I N IE +L + ++ A
Sbjct: 427 KG-KEIHNFIIESKLEINEVVMGA 449
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 175/438 (39%), Gaps = 132/438 (30%)
Query: 108 FMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYA-KNGYAEEAVKLFPKWMDYYIG 166
+M KL +E++S ++ S+ C Q +V I G++ KNG
Sbjct: 99 YMRKLDIEVDSFIIPSVLKACS-QISVARMGKEIHGFSVKNGLV---------------- 141
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----------G 216
++V V L+ MY++CGS+ A + FD+ ++DVV S MI Y
Sbjct: 142 -----SDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRS 196
Query: 217 LHEWSAF------------GSFDGLLSNEENEYGT-----ALDCSCD-LEFLEQGKIVHG 258
+ W+A G + EEN + +L SC + ++ GK +H
Sbjct: 197 IVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHA 256
Query: 259 FMIKLGLELESDL---LISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEE 303
++++ G + L L+ + C +V W AMIS YA+ +
Sbjct: 257 YILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDY 316
Query: 304 AVKLF------------------------------PKWMDYYIGKSEYRNNVIVNTVLID 333
A +LF KW YI K +VI+ T LID
Sbjct: 317 AFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALID 376
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP---- 389
MYAKCG + A F +D+D+ + M GYG+HG GE+ LF + G++P
Sbjct: 377 MYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDIT 436
Query: 390 --------------------------------RHQHYARVVDLLARAGYSNHAFKFIMNM 417
+ +HY +VDLL RAG + A+K I +M
Sbjct: 437 FIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESM 496
Query: 418 PIELRLSVRRALLSAWKI 435
P+ +++ A+L+A KI
Sbjct: 497 PVTPNIAIWGAMLAACKI 514
>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 163/413 (39%), Gaps = 118/413 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMD----------------------YYIGKSEY----R 171
+A+I+ + ++GY +EA+ LF + +GKS + +
Sbjct: 58 SAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVK 117
Query: 172 NNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGS 225
NV V T L+ MYAKCG LA F+R KDVV +AMI GY + A
Sbjct: 118 ANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEM 177
Query: 226 FDGLLSNEEN-EYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAV 278
F L +E N GT L L L+QG +HG +IK G E E + LI + A
Sbjct: 178 FHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAK 237
Query: 279 CRY-------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW-------------- 311
C + + WN MI+GY +G+A +A F +
Sbjct: 238 CGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVT 297
Query: 312 ----------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ Y+ + +++ V LIDMYAKCG +D + F +KD
Sbjct: 298 VLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKD 357
Query: 356 VVMRSAMTVGYGLHGLGE-----------------------------------EGWVLFH 380
V + M GY +HG G EG +F
Sbjct: 358 TVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFD 417
Query: 381 HIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+ K H +EP +HYA + DLL RAG N I +MP+E V ALL A
Sbjct: 418 SMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGA 470
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 137/317 (43%), Gaps = 61/317 (19%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV-----GYGLHEWSAFGSF 226
++V V T ++ MYA+CG VD A F +D+V SA+I GY S F S
Sbjct: 21 SDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSM 80
Query: 227 --DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY 281
+GL +N+ + C+ ++ L+ GK +H +K ++L+ + L+S+ A C +
Sbjct: 81 QNEGLQANKVILLSSLPACA-EVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGF 139
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW------------------ 311
+V WNAMI+GYA+ G A+++F K
Sbjct: 140 FALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPA 199
Query: 312 ------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVM 358
+ I K + + V T LIDMYAKCGS+ A F RT KD V
Sbjct: 200 FALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVS 259
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKF 413
+ M GY G + + F ++ I+P V+ +A RAG + HA +
Sbjct: 260 WNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHA--Y 317
Query: 414 IMNMPIELRLSVRRALL 430
++ M + + V L+
Sbjct: 318 VIRMGFQSKTPVGNCLI 334
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
++V V T ++ MYA+CG VD A F +D+V SA+ + G +E LF +
Sbjct: 21 SDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSM 80
Query: 383 RKHGIEPRH-------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ G++ A V L + G S H N ++L +SV AL+S +
Sbjct: 81 QNEGLQANKVILLSSLPACAEVSSL--KLGKSMHCCAVKAN--VDLDISVGTALVSMY 134
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 101/365 (27%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----GLHEWSAFGS 225
+ +++ V++ LIDMY+KCG + A + FD +++V +++I GY HE A
Sbjct: 113 FESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHE--ALMV 170
Query: 226 FDGLL--SNEEN--EYGTALDCSCDLEFLEQ---------GKIVHGFMIKLGLE----LE 268
F L +E N E GT++D + L + VHG IK+GL+ +E
Sbjct: 171 FKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVE 230
Query: 269 SDLL--------ISLTAVC---RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
+ LL +SL+ + +V WN+MI+ YA+NG + +A ++F + G
Sbjct: 231 NTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGG 290
Query: 318 KSE-------------------------------YRNNVIVNTVLIDMYAKCGSVDLAPM 346
K Y NNVI+ T +IDMY KCG ++A
Sbjct: 291 KYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARN 350
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLG---------------------------------- 372
FD +K+V +AM GYG+HG
Sbjct: 351 AFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGF 410
Query: 373 -EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
EEGW F+ + ++ +EP +HY +VDLL RAGY A+ I +M + + +LL
Sbjct: 411 LEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLL 470
Query: 431 SAWKI 435
+A +I
Sbjct: 471 AACRI 475
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 115/298 (38%), Gaps = 87/298 (29%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFD-----GLFDRTI 55
+ PN T P +K+C AL L G + H Q GF + L D G
Sbjct: 78 IKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNAR 137
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSNEE--------------------NEYGTALDCSCD 95
V D + W++ G + N++ E GT++D
Sbjct: 138 VLFDEIPRRNIVTWTSL--ITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAM 195
Query: 96 LEFLEQ---------GKIVHGFMIKLGLE----LESDLL--------ISLTAVC---RYQ 131
+ L + VHG IK+GL+ +E+ LL +SL+ +
Sbjct: 196 ISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAE 255
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE---------------------- 169
+V N+MI+ YA+NG + +A ++F + GK
Sbjct: 256 KDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMC 315
Query: 170 ---------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
Y NNVI+ T +IDMY KCG ++A FD +K+V +AMI GYG+H
Sbjct: 316 LHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMH 373
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 130/555 (23%), Positives = 205/555 (36%), Gaps = 158/555 (28%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTIVF 57
P+ P V KAC AL G VHG + G F+ L D G+ D
Sbjct: 169 PDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKV 228
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENE--------------------YGTALDCSCDLE 97
D + W+A G + N NE T L S +++
Sbjct: 229 FDEIPERNVVAWNAL--MVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMD 286
Query: 98 FLEQGKIVHGFMIKLGLELESDLLIS-LTAVCRY--------------QPNVTLRNAMIS 142
+E+GK H I GLEL++ L S L C+ + +V N +IS
Sbjct: 287 GIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLIS 346
Query: 143 GYAKNGYAEEAVKL------------------------------FPKWMDYYIGKSEYRN 172
GY + G E+A+ + K + Y + + +
Sbjct: 347 GYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFAS 406
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
++++ + +DMYA CGS+ A FD L KD+++ + ++ Y S AF F
Sbjct: 407 DIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLF---- 462
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
Y L+ S + I+ F+ + G E+ + S PN+ W
Sbjct: 463 ------YEMQLE-SVPPNAITWNLIILSFL-RNGQVNEAKEIFSQMQSSGIFPNLVSWTT 514
Query: 291 MISGYAKNGYAEEAVKLFPKWMD-------------------------------YYIGKS 319
M++G +NG +EEA+ K + Y I
Sbjct: 515 MMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQ 574
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
++ ++V++ T L+DMYAKCG ++ A M F L D+ + +AM Y L+G +E L
Sbjct: 575 QHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALC 634
Query: 380 HH------------------------------------IRKHGIEPRHQHYARVVDLLAR 403
+ KHGI+P +HY +VD+LA
Sbjct: 635 RRLEDTGIKPDNITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDILAS 694
Query: 404 AGYSNHAFKFIMNMP 418
AG ++ A + I MP
Sbjct: 695 AGETDKALRLIEEMP 709
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 53/258 (20%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSF 226
Y N + T L+ YAKC + + + + F + ++V +A+I GL E + G F
Sbjct: 101 YAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKCRIGLCEEALMG-F 159
Query: 227 DGLLSNE---ENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC 279
+L NE +N + +C L++ G+ VHG+++K GL + L + C
Sbjct: 160 VEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKC 219
Query: 280 RY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
+ NV WNA++ GY +NG EEA++L I
Sbjct: 220 GVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCL 279
Query: 317 -----------GKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
GK + + I+ T ++ Y K G ++ A M FDR ++KDVV
Sbjct: 280 SASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVV 339
Query: 358 MRSAMTVGYGLHGLGEEG 375
+ + GY GL E+
Sbjct: 340 TWNLLISGYVQQGLVEDA 357
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 30/136 (22%)
Query: 284 NVTLWNAMISGYAKNGYAEEAV---------KLFP---------------KWMDY----- 314
NV W A+I + G EEA+ ++FP +W +
Sbjct: 135 NVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVH 194
Query: 315 -YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
Y+ KS + V V + L DMY KCG +D A FD +++VV +A+ VGY +G+ E
Sbjct: 195 GYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNE 254
Query: 374 EGWVLFHHIRKHGIEP 389
E L +RK GIEP
Sbjct: 255 EAIRLLSDMRKEGIEP 270
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 144/350 (41%), Gaps = 86/350 (24%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL 229
N++++ ++++MYAKCG +D A FD KD+V +A+I G+ + A F +
Sbjct: 121 NHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM 180
Query: 230 LS--NEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQ 282
L + N + + L S L+ G +H F +K G + L+ + A C +
Sbjct: 181 LRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHM 240
Query: 283 PNVTL------------WNAMISGYAKNGYAEEAVKLF---------------------- 308
L WNA+ISG+A+ G E A+ L
Sbjct: 241 DAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSAC 300
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
KW+ ++ KS + + L+DMYAK GS+D A FDR + DVV +
Sbjct: 301 ASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWN 360
Query: 361 AMTVGYGLHGLG-----------------------------------EEGWVLFHHIRKH 385
M G HGLG +EG F ++K+
Sbjct: 361 TMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKY 420
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+EP HY VDLL R G + A +FI MPIE +V ALL A ++
Sbjct: 421 KVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRM 470
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR------------NAMISG 143
L+ G +H F +K G + L+ + A C + L NA+ISG
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
+A+ G E A+ L KW+ ++ KS +
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLI 324
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ L+DMYAK GS+D A FDR + DVV + M+ G H
Sbjct: 325 AFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
P+ L++ ++ + G E+ + +D + N++++ ++++MYAKCG +D
Sbjct: 85 PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHF----LDNHLVLQNIIVNMYAKCGCLD 140
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391
A FD KD+V +A+ G+ + + +LF + + G +P H
Sbjct: 141 DARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNH 189
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 125/484 (25%), Positives = 192/484 (39%), Gaps = 117/484 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGFLV-CYLFDGLFDRTI 55
M+ V PNG T +L+AC +LL PR VHGQI GF ++ + L D
Sbjct: 101 MRAQGVPPNGFTFTFLLRAC----ALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMD--- 153
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSNEENEY----------GTALDCSCDLEFLEQGKIV 105
V+ + +A FD ++ + + G A E + + +V
Sbjct: 154 VYYRCGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVV 213
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQP-NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164
+ G D++ + T R N N MISGYA +G E A +F + MD
Sbjct: 214 SWNTVVAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR-MD-- 270
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
+ +V+ T ++ YAK G +D A FD K++V +AMI GY
Sbjct: 271 ------QKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGY--------- 315
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
N + Y AL + L LE R++P+
Sbjct: 316 -------NHNSRYDEALR-TFQLMMLEG---------------------------RFRPD 340
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
+++S A+ G E + W+ +IGKS V + LIDM+AKCG V A
Sbjct: 341 EATLVSVVSACAQLGSVE-----YCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRA 395
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLG-------------------------------- 372
F + + ++ + M G+ +GL
Sbjct: 396 QSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHG 455
Query: 373 ---EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRA 428
+EGW +F+ + ++ I+PR +HY VVDLL RAG A FI +MP+E + +
Sbjct: 456 GLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVT 515
Query: 429 LLSA 432
LLS+
Sbjct: 516 LLSS 519
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/481 (24%), Positives = 187/481 (38%), Gaps = 134/481 (27%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPN 133
AL L+ LE GK++HGF+ K ++ + LI L + C + +
Sbjct: 111 ALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQD 170
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWM-----------------------DYYIGKS-- 168
V L ++I+GY +NG E A+ F + + D+ +G+S
Sbjct: 171 VVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVH 230
Query: 169 ------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EW 220
+ + + ++++Y K GS+ A F KD++ S+M+ Y + E
Sbjct: 231 GFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAET 290
Query: 221 SAFGSFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
+A F+ ++ E N +AL LE+GK +H + G EL+ S L+
Sbjct: 291 NALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALM 350
Query: 274 SLTAVCRYQPN------------VTLWNAMISGYAKNGYAEEAVKLFPKWMDY------- 314
+ C N V W + SGYA+ G A +++ +F + Y
Sbjct: 351 DMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAI 410
Query: 315 -----------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
++ KS + NN + LI++YAKC S+D A F
Sbjct: 411 ALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGM 470
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-------------------------G 386
KDVV S++ YG HG GEE LF+ + H G
Sbjct: 471 RRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEG 530
Query: 387 IE------------PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I+ P +HY +VDLL R G + A I MP++ V ALL A +
Sbjct: 531 IKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACR 590
Query: 435 I 435
I
Sbjct: 591 I 591
>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 833
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 135/546 (24%), Positives = 218/546 (39%), Gaps = 136/546 (24%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTI------- 55
P+ T P V KAC + + +G +HG + LGF VC ++ +
Sbjct: 123 TPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARK 182
Query: 56 VFLDLYH--LWSRTEWSAFGSF----------DGLLSNEENEYGTALDCSCDLEFLEQ-- 101
VF +L + + W++ S L YG D + L
Sbjct: 183 VFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCG 242
Query: 102 -------GKIVHGFMIKLGLELE---SDLLISLTAVC-------------RYQPNVTLRN 138
G+ VHGF ++ GL + + L+ + A C R++ VT N
Sbjct: 243 YLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTW-N 301
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAP 194
AM++GY++NG E+A+ LF K + I ++V+ + +I YA+ C ++D+
Sbjct: 302 AMVTGYSQNGRFEDALSLFGKMREEKI-----ESDVVTWSSVISGYAQRGFGCEAMDVFR 356
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE--------YGTALDCSCD 246
+VV +++ SA S LL +E G D + D
Sbjct: 357 QMCGCRCRPNVVTLMSLL--------SACASVGALLHGKETHCYSVKFILKGEHNDDTDD 408
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK 306
L + ++ + LE+ + +C +V W MI GYA++G A A++
Sbjct: 409 LAVINA--LIDMYAKCKSLEVARAM---FDEICPKDRDVVTWTVMIGGYAQHGDANHALQ 463
Query: 307 LFPKWMD---------------------------------YYIGKSEYRNNVI-VNTVLI 332
LF + Y + +S ++V+ V LI
Sbjct: 464 LFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLI 523
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH------- 385
DMY+K G VD A + FD ++ V +++ GYG+HG E+ + +F +RK
Sbjct: 524 DMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGI 583
Query: 386 ----------------GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
G++P +HYA +VDLL RAG A + I +MPIE V AL
Sbjct: 584 TFLVVLYACSHSGMDFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIAL 643
Query: 430 LSAWKI 435
LSA +I
Sbjct: 644 LSACRI 649
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 139/630 (22%), Positives = 236/630 (37%), Gaps = 207/630 (32%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-VCYLFDGLFD---------RTI 55
V P+ T L+ C AL S G +VH ++ + GF ++ + L D +
Sbjct: 272 VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 331
Query: 56 VFLDLYHLWSRTEWSA-------FGSFDG----LLSNEENEY-------GTALDCSCDLE 97
D ++ W++ FG F+ L +E+ Y G+ L S L
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAM 140
+ +G+ +HG +++ L SD+++ V Y + N NA+
Sbjct: 392 DIGKGRELHGHLVRN--LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNAL 449
Query: 141 ISGYAKNGYAEEAVKLFP-------------------------------KWMDYYIGKSE 169
++GY + G AEEA++L+ + + ++ ++
Sbjct: 450 LAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN 509
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFD 227
N+IV T L+ MY++CG ++ A F+R +++ ++MI GY + A F
Sbjct: 510 ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFK 569
Query: 228 GLLSNEENEYGTALDC--------SC-DLEFLEQGKIVHGFMIKLGLELESDL---LISL 275
+ N G DC SC L ++G+ +H F+++ +E E L L+ +
Sbjct: 570 QMQLN-----GIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDM 624
Query: 276 TAVC-------------------------------------------RYQPNVTLWNAMI 292
A C Q N LWN+++
Sbjct: 625 YAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSIL 684
Query: 293 SGYAKNGYAEEAVKLFPKWMD-------------------------------YYIGKSEY 321
+GYA G +E+ F + ++ I K
Sbjct: 685 AGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFV 744
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+V++ T L+DMY+KCG++ A FD K++V +AM GY HG +E +L+
Sbjct: 745 NCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEE 804
Query: 382 IRKHG------------------------------------IEPRHQHYARVVDLLARAG 405
+ K G IE + +HY +VDLL RAG
Sbjct: 805 MPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAG 864
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A +F+ MPIE +S ALL A ++
Sbjct: 865 RLEDAKEFVEKMPIEPEVSTWGALLGACRV 894
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 169/395 (42%), Gaps = 95/395 (24%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
++PN ++++ +A G A + W+ + + NV V T L+DMY+K G
Sbjct: 118 FKPNAVTISSVLPAFANLGLIRIAKSVHCFWV-----RGGFEGNVFVETALVDMYSKFGC 172
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFD-----GLLSNEENEYGTALD 242
+ +A F+ +++VV +A++ GY H +S A F+ GLL + + +
Sbjct: 173 MGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIM-SLIP 231
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-----C----------RYQPNVTL 287
S + L+ G +HGF+I+ G E + + +L + C + +V
Sbjct: 232 ASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAA 291
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMD---------YYIG--------------------- 317
W M++G++ + + A+K F K + +G
Sbjct: 292 WTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALA 351
Query: 318 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
K+ + NN+ V + +IDMYA CG+++ A FF +KDVV +AM G G++G G +
Sbjct: 352 IKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAI 411
Query: 377 VLFHHIRKHGIEPRH------------------------------------QHYARVVDL 400
LF ++ G++P QHYA V+D+
Sbjct: 412 DLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDI 471
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L RAG + A+ FI NMP + V LL A +I
Sbjct: 472 LGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRI 506
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 146/593 (24%), Positives = 217/593 (36%), Gaps = 162/593 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
M V + P VL AC + SL +G ++HG + LGF VC L+
Sbjct: 262 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGS 321
Query: 57 FLDLYHLWSRTEWS---------------AFG----------SFDGLLSNEENEYGTALD 91
+ H++S +G DGL + +
Sbjct: 322 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVA 381
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR------------YQPNVTL 136
CS D G+ +H + KLG + L++L A C NV L
Sbjct: 382 CSSDGTLF-SGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVL 440
Query: 137 RNAMISGYA-----KNGYA-------EEAVK---LFPKWM-------DYYIG-------- 166
N M+ Y +N + EE V +P + D +G
Sbjct: 441 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 500
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
K+ ++ N V +VLIDMYAK G +D A R KDVV + MI GY + + A
Sbjct: 501 KTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALT 560
Query: 225 SFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
+F +L +E G A+ L+ L++G+ +H G + + L++L +
Sbjct: 561 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS 620
Query: 278 VCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFP---------------- 309
C L WNA++SG+ ++G EEA+++F
Sbjct: 621 KCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGS 680
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + I K+ Y + V +I MYAKCGS+ A F K+
Sbjct: 681 AVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKN 740
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHI--------------------------------- 382
V +AM Y HG G E F +
Sbjct: 741 EVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFE 800
Query: 383 ---RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
++G+ P+ +HY VVD+L RAG + A FI+ MPIE V R LLSA
Sbjct: 801 SMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSA 853
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 114/286 (39%), Gaps = 55/286 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL- 229
+ IV LID+Y++ G VD A FD KD AMI G +E A F +
Sbjct: 204 STIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMY 263
Query: 230 ---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY----- 281
+ + + L +E LE G+ +HG ++KLG SD + V Y
Sbjct: 264 VLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS--SDTYVCNALVSLYFHLGS 321
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------- 310
Q + +N +I+G ++ GY E+A++LF +
Sbjct: 322 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVA 381
Query: 311 -----------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ Y K + +N + L+++YAKC ++ A +F T ++VV+
Sbjct: 382 CSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLW 441
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+ M V YGL + +F ++ I P Y ++ R G
Sbjct: 442 NVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 122/327 (37%), Gaps = 64/327 (19%)
Query: 128 CRYQPNVTLRNAMISGYAK-NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
C +PN ++ G K NG +E KL + I K + NN ++ L+D Y
Sbjct: 61 CGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQ-----ILKLGFDNNACLSEKLLDFYLF 115
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSF--DGLLSNEENEYGT 239
G +D A FD ++ + + MI S FG + + NE G
Sbjct: 116 KGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGV 175
Query: 240 ALDC---SCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTA----VCR--------Y 281
C S + +EQ +H +I GL + + LI L + V R Y
Sbjct: 176 LEACRGGSVAFDVVEQ---IHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLY 232
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG-- 317
+ + W AMISG +KN EA++LF K IG
Sbjct: 233 LKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ 292
Query: 318 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
K + ++ V L+ +Y GS+ A F +D V + + G G
Sbjct: 293 LHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 352
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVV 398
GE+ LF ++ G+EP A +V
Sbjct: 353 GEKAMELFKRMQLDGLEPDSNTLASLV 379
>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Vitis vinifera]
Length = 773
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 137/523 (26%), Positives = 225/523 (43%), Gaps = 118/523 (22%)
Query: 2 QVAWVAP--NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDR-- 53
++ WV N T ++L+AC +L +L+ G ++HG + GF V ++ R
Sbjct: 169 EMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCG 228
Query: 54 ----------TIVFLDLYHL-WSRTEW-------SAFGSFDGLLSN--EENEYG-----T 88
+ + D+ L + +E+ A G F LL + E N+Y +
Sbjct: 229 DLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVIS 288
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV--------------CRY-QPN 133
A + D+E L +++HG IK G E + ++ +V C + N
Sbjct: 289 ACNGDIDVEVL---RVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERN 345
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG--------------------------- 166
+ A++SGY KNG ++A++ F + ++ +G
Sbjct: 346 LVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHG 405
Query: 167 ---KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLHEWSA 222
K Y ++V V T LID+YAKC + A + F LDK++V +A++ GY G E A
Sbjct: 406 FVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYIGADEEDA 465
Query: 223 FGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F L + + + L S D L +GK +H ++IK G E
Sbjct: 466 MALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFE------------ 513
Query: 279 CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 338
N ++ NA+I+ YAK G +A +LF Y +++ N V I YA
Sbjct: 514 ----ANPSVGNAVITMYAKCGSIGDACQLFYSM--------NYLDSISWNAV-ISAYALH 560
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTV-----GYGLHGLGEEGWVLFHHIR-KHGIEPRHQ 392
G A + F+ + K+ + +T+ GL EEG+ LF+ + K+GI+P +
Sbjct: 561 GQGRKALILFEE-MKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIE 619
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H+A +VDLL RAGY + A FI P + R L+ K+
Sbjct: 620 HFACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKL 662
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 160/377 (42%), Gaps = 90/377 (23%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC-------RYQPNVTLR-- 137
+ + +LE L GK HG +IK+ L + +L SL A C R N+ R
Sbjct: 143 IKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDV 202
Query: 138 ---NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
N+MI+ + + G EEA++LF + E +N++ ++ ++DMY KCGSV+ A
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEM--------ETQNSLTLSNAMLDMYTKCGSVEDAK 254
Query: 195 MFFDRTLDKDVVMRSAMIVGYG-LHEW-SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
FD+ +KD+V + M+VGY + E+ +A G FD + + +
Sbjct: 255 RLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQD------------------- 295
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ WNA+IS Y + G +EA++LF +
Sbjct: 296 --------------------------------IAAWNALISAYEQCGKPKEALELFHELQ 323
Query: 313 -------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
D K + N + T LIDMY KCG + A M F KDV + SAM G
Sbjct: 324 LSKTAKPDEVTLKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAG 383
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN-------MP 418
+HG G++ LF +++ ++P + ++ + G F MP
Sbjct: 384 LAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGKMP 443
Query: 419 IELRLSVRRALLSAWKI 435
+ SV ALL A I
Sbjct: 444 MAPAASVWGALLGACTI 460
>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
Length = 559
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 124/508 (24%), Positives = 198/508 (38%), Gaps = 136/508 (26%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLG-----LELESDLLI-----SLTAVCRY----- 130
Y + L C QGK VHG + L L + L+I A R
Sbjct: 14 YSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARKMFDGM 73
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYY---------------- 164
+V AM+SGYA+NG EA++LF P Y
Sbjct: 74 PHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGE 133
Query: 165 -----IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GL 217
K + ++ V + L+DM+ +CGSV+ A F KDVV +A+I G+
Sbjct: 134 QVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERG 193
Query: 218 HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
H+ A G F +L + G+AL + +++H +IKLG E ++
Sbjct: 194 HDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIG 253
Query: 274 SLT---AVCRY------------QPNVTLWNAMISGYAKN-GYAEEAVKLFPK------W 311
SL A CR +P++ A+ISGY + Y+E+A++LF K W
Sbjct: 254 SLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHRKGLW 313
Query: 312 MD------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+D Y+ K + ++ ++ L+DMYAK G A
Sbjct: 314 IDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFSDAKRA 373
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-------------------------- 381
FD ++V+ +++ G +G GE+ LF+
Sbjct: 374 FDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLT 433
Query: 382 ----------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+ ++GI+PR +HY+ +DLLAR G A+K + ++ S+ A+L
Sbjct: 434 NKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLG 493
Query: 432 AWKI--PMQQWENMLQTIRGIDEGEKTD 457
A K+ M E + + ID G +
Sbjct: 494 ACKLHGNMLLGETAAKNLFSIDPGSSVN 521
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 191/483 (39%), Gaps = 116/483 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGF----------LVCYL 46
M A V PNG T +L+AC +LL PR VHGQI GF L Y
Sbjct: 96 MLAAGVPPNGFTFTFLLRAC----ALLGFPRPCRCVHGQIVRWGFGSEVFVQNTLLDVYY 151
Query: 47 FDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 106
G R ++ + ++ S G+ + +Y A++ E + + +V
Sbjct: 152 RCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSS-GDYTGAMEL---FEAMPERNVVS 207
Query: 107 GFMIKLGLELESDLLISLTAVCRYQP-NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
+ G D++ + T R N N MISGYA +G E A +F + MD
Sbjct: 208 WNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDR-MDQ-- 264
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
+ +V+ T ++ YAK G +D A FD K++V +AMI GY
Sbjct: 265 -----KKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGY---------- 309
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
N + YG AL + L LE R++P+
Sbjct: 310 ------NHNSRYGEALR-TFQLMMLEG---------------------------RFRPDE 335
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+++S A+ G E + W+ +I KS + + LIDM+AKCG V A
Sbjct: 336 ATLVSVVSACAQLGSVE-----YCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQ 390
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------------- 372
F + ++ + M G+ +GL
Sbjct: 391 SIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGG 450
Query: 373 --EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
+EGW +F+ + ++ I+PR +HY VVDLL RAG A FI +MP+E + + L
Sbjct: 451 LLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATL 510
Query: 430 LSA 432
LS+
Sbjct: 511 LSS 513
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 162/389 (41%), Gaps = 108/389 (27%)
Query: 153 AVKLFPKWMDYYIGKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
A+K +D + G+ ++ +I V++ L+DMY+KCG + A FD ++
Sbjct: 158 AIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRN 217
Query: 205 VVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDC-----------SCDL---E 248
+V ++MI GY ++ A F L E G C +C +
Sbjct: 218 IVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEK 277
Query: 249 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLWNAMIS 293
+ +G VHGF+IK G E + + L+ A C + +V WN++I+
Sbjct: 278 SITEG--VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIA 335
Query: 294 GYAKNGYAEEAVKLFPKWM-----------------------DYYIGKSEY--------R 322
YA+NG + E++++F + + +GK +
Sbjct: 336 VYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE 395
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+NV V T +IDMY KCG V++A FDR +K+V SAM GYG+HG +E +F+ +
Sbjct: 396 SNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEM 455
Query: 383 RKHGIEPRH------------------------------------QHYARVVDLLARAGY 406
G++P + +HY +VDLL RAGY
Sbjct: 456 NMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGY 515
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
AF I M + V ALL A ++
Sbjct: 516 LKEAFDLIKGMKLRPDFVVWGALLGACRM 544
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 30/128 (23%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGKS 319
+ NV WN++I+ A++G + EA++ F +D + G+
Sbjct: 114 KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 173
Query: 320 EYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
++ +I V++ L+DMY+KCG + A FD +++V ++M GY +
Sbjct: 174 AHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDD 233
Query: 372 GEEGWVLF 379
+LF
Sbjct: 234 AHRALLLF 241
>gi|293333352|ref|NP_001168668.1| uncharacterized protein LOC100382456 [Zea mays]
gi|223950067|gb|ACN29117.1| unknown [Zea mays]
Length = 602
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 165/416 (39%), Gaps = 118/416 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIG- 166
N MIS Y ++ EEAV +F P Y +
Sbjct: 121 NCMISAYGRSSQVEEAVGVFNAMRRAEVRPSGSTVVGLLSGCADSVSARYPGVSVYGLTI 180
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLHEW-SAFG 224
KS +++V+ ++ M + G +D A + FDR +K VV SAM Y +W F
Sbjct: 181 KSGLDADLLVSNSVLTMLVRGGQLDSARLLFDRVENKSVVTWSAMASAYLQTGDWMEVFA 240
Query: 225 SFDGLLSNEENEYGTALD--CSCDLEFLEQ--GKIVHGFMIKLGLELESDLLISLTAVCR 280
F + E+ L + + F K VH IK+G + + DL SL +
Sbjct: 241 LFSSMRETEQPMDSVVLANLITAAMLFGNNLVAKGVHALAIKVGFDRQEDLAASLVNLYS 300
Query: 281 YQPN---------------VTLWNAMISGYAKNGYAEEAVKLF----------------- 308
N V +W +M++GY + GY +EA+ F
Sbjct: 301 KCGNLLAAREVFDSLQWKSVIMWTSMLNGYVECGYPDEALATFDAMLCAKVEPNKATVLA 360
Query: 309 -------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ ++ ++ E ++++ V T LIDMY KCGS+ A FD ++D
Sbjct: 361 VLSAGANLGSANVAQKVEEHVKAMELQSDLQVCTRLIDMYCKCGSIQRARKIFDSVPNRD 420
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------------------- 383
+ + SAM G+ +G G E VLF+ ++
Sbjct: 421 LAIWSAMINGHACNGEGSEAVVLFNEMQSKGVRPDAIVFTHILTACSHSGSVDEGLRCFH 480
Query: 384 ----KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HGIEP +HY ++DLL +AG+ + A KF MP+ LR V L+SA ++
Sbjct: 481 SMTAEHGIEPSVEHYMCMIDLLCKAGHLSSAIKFFGEMPVRLRNQVLAPLISAHRV 536
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/436 (25%), Positives = 176/436 (40%), Gaps = 131/436 (30%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVK 155
L+ L+ G+ +H +K G S VT+ N +++ Y K G
Sbjct: 105 LQDLKTGEQIHAAAVKFGYGSSS---------------VTVANTLVNMYGKCGG------ 143
Query: 156 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
IG + NN L+ MYAK G VD + F+ +D+D+V + MI +
Sbjct: 144 ---------IGDKTFTNNA-----LMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSF 189
Query: 216 GLHE-WSAFGSFDGLLSNEENEY-----GTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
+ +S +F L+ E E + L LE L+ GK +H ++++ +E+
Sbjct: 190 SQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIEN 249
Query: 270 DL----LISLTAVCRYQPN------------VTLWNAMISGYAKNGYAEEAVKLF----- 308
L+ + CR + + LWNAMISGYA+NG E+A+ LF
Sbjct: 250 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 309
Query: 309 ---------------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
K + Y ++ +++ V + L+DMYAKCG +
Sbjct: 310 VAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCL 369
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
+L+ F+ +K+V+ + + + G+HG GEE LF ++
Sbjct: 370 NLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFIT 429
Query: 383 ----------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
HG+EP HYA VVDLL RAG A++ + MP E
Sbjct: 430 VFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAE 489
Query: 421 L-RLSVRRALLSAWKI 435
++ +LL A +I
Sbjct: 490 FDKVGAWSSLLGACRI 505
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 150/626 (23%), Positives = 214/626 (34%), Gaps = 204/626 (32%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLDLYH----- 62
N T V++ C G VH Q+ LG + YL + L + F D+
Sbjct: 55 NSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVF 114
Query: 63 ----LWSRTEWS--------------AFGSF----DGLLSNEENEYGTALDCSCDLEFLE 100
L WS AF +F D + + + L + LE
Sbjct: 115 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILE 174
Query: 101 QGKIVHGFMIKLGLELESDLLISL----------TAVCRYQPNVTLRN-----AMISGYA 145
+G+ +H + +G+E + + +L + C +T RN A+I A
Sbjct: 175 KGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANA 234
Query: 146 KNGYAEEAVKLFPKWMD------------------------------YYIGKSEYRNNVI 175
++ EA +L+ + + +I + ++I
Sbjct: 235 QHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMI 294
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD-------- 227
V LI MY KC SV A FDR +DV+ SAMI GY + S D
Sbjct: 295 VANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLER 354
Query: 228 ----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL------------ 271
G+ N+ C+ LEQG+ +H + K+G EL+ L
Sbjct: 355 MRREGVFPNKVTFMSILRACTAH-GALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCG 413
Query: 272 --------------------------------LISLTAVCRYQP--NVTLWNAMISGYAK 297
L S V P NV WN MI+GYA+
Sbjct: 414 SIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQ 473
Query: 298 NGYAEEAVKLFP---------------------------------KWMDYYIGKSEYRNN 324
NG + VK+F K + K ++
Sbjct: 474 NG---DIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESD 530
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+V T LI MY+KCG V A FD+ ++D V +AM GYG HG G E LF + K
Sbjct: 531 TVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLK 590
Query: 385 HGIEP------------------------------------RHQHYARVVDLLARAGYSN 408
+ P R QHY +VDLL RAG
Sbjct: 591 ERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQ 650
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWK 434
A +FI +MP E +SV ALL A K
Sbjct: 651 EAEEFIQSMPCEPDISVWHALLGACK 676
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 126/504 (25%), Positives = 199/504 (39%), Gaps = 146/504 (28%)
Query: 70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG-LELESDLLISLTA-- 126
S+ +FD L + GT L + + L Q +H + G L + L L A
Sbjct: 15 SSTSTFDSL------QCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACY 68
Query: 127 -VCRYQP------------NVTLRNAMISGYAKNGYAEEAVKLFPKWMDY---------- 163
VC + P N L N+MI GYA N A+ L+ K + +
Sbjct: 69 AVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYP 128
Query: 164 ------------YIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 203
+G+ + +V V ++ MY K G V+ A + FDR L +
Sbjct: 129 FVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVR 188
Query: 204 DVVMRSAMIVGYGLHEWSAFGSF--------DGLLSNEENEYGTALDCSCDLEFLEQGKI 255
D+ + M+ G+ + A G+F DG + + C D+ L+ GK
Sbjct: 189 DLTSWNTMMSGF-VKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACG-DVMDLKVGKE 246
Query: 256 VHGFMIKLG----------LELESDLLISLTAV-CRYQ-------PNVTLWNAMISGYAK 297
+HG++++ G + D+ + +V C + +V WN++ISGY K
Sbjct: 247 IHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEK 306
Query: 298 NGYAEEAVKLFPKWM------------------------------DYYIGKSEYRNNVIV 327
G A +A++LF + + Y+ K Y NV+V
Sbjct: 307 CGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVV 366
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----- 382
T LI MYA CGS+ A FD +K++ + M G+G+HG G E +F+ +
Sbjct: 367 GTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGV 426
Query: 383 -------------------------------RKHGIEPRHQHYARVVDLLARAGYSNHAF 411
R + +EPR HY+ +VDLL RAGY + A+
Sbjct: 427 TPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAY 486
Query: 412 KFIMNMPIELRLSVRRALLSAWKI 435
I NM ++ V ALLSA ++
Sbjct: 487 AVIENMKLKPNEDVWTALLSACRL 510
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 172/417 (41%), Gaps = 119/417 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW-----------------------MDYYIG-------- 166
NA++S Y +N E+A+ +F + +D +G
Sbjct: 176 NAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMAT 235
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLA-PMFFDRTLDKDVVMRSAMIVGYGLHE--WSAF 223
K + ++V V LI MY KCG V+ A FD K V +A++ GY + A
Sbjct: 236 KMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKAL 295
Query: 224 GSF----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA-- 277
+ D L + G+ L ++ L G+ +HGF ++ GL ++ + ISL +
Sbjct: 296 DLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLY 355
Query: 278 VCRYQP-------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMD-----YYIG-- 317
+C +P ++ WN MI+GY++NG +EA+ LF + + Y I
Sbjct: 356 ICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIM 415
Query: 318 -----------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
K+ ++ V++ +IDMYAK G + L+ FDR +K
Sbjct: 416 CVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK 475
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------------ 384
DV + + GYG+HG G+E LF + +
Sbjct: 476 DVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYF 535
Query: 385 ------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H IEP+ +HY VVD+L RAG + A + I MP + + +LLS+ +I
Sbjct: 536 NQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRI 592
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 61/281 (21%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAF 223
+++ N+ ++NT +I MY+ CGS + M FD+ K++ +A++ Y +E A
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 192
Query: 224 GSFDGLLSNEENEYGT-ALDC---SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F L+S E++ L C +C L L G+I+HG K ++L SD+ + +
Sbjct: 193 SIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATK--MDLVSDVFVGNALI 250
Query: 279 CRY------------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKW 311
Y V+ WNA++ GYA+N +A+ L+ P W
Sbjct: 251 AMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDW 310
Query: 312 MDYYIG---------KSEY----------RNNVIVNTV----LIDMYAKCGSVDLAPMFF 348
+ IG KS + RN + V+ L+ +Y CG A + F
Sbjct: 311 --FTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLF 368
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
D + +V + M GY +GL +E LF + GI+P
Sbjct: 369 DGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 409
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 117/285 (41%), Gaps = 74/285 (25%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSL----------GFLVCYLFDGLFDRTIV- 56
P+ T P V+KAC L L +G +HG + + Y GL + +
Sbjct: 206 PDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKR 265
Query: 57 FLDLYHLWSRTEWSAF-----------GSFDGLLSNEEN-------EYGTALDCSCDLEF 98
DL + + W+A + D L ++ G+ L ++
Sbjct: 266 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 325
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTA--VCRYQP-------------NVTLRNAMISG 143
L G+ +HGF ++ GL ++ + ISL + +C +P ++ N MI+G
Sbjct: 326 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAG 385
Query: 144 YAKNGYAEEAVKLFPKWMD-----YYIG-------------------------KSEYRNN 173
Y++NG +EA+ LF + + Y I K+ +
Sbjct: 386 YSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTED 445
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ V++ +IDMYAK G + L+ FDR +KDV + +I GYG+H
Sbjct: 446 IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIH 490
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 47/206 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHG-------------QIFSLGFLVC--- 44
M + + P+ T +L AC + SL G +HG I L +C
Sbjct: 301 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGK 360
Query: 45 -----YLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSC-- 94
LFDG+ R++V ++ + + A F +LS+ Y A+ C C
Sbjct: 361 PFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGA 420
Query: 95 --DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVT 135
L L GK +H F +K L D+ +S + + Y + +V
Sbjct: 421 CSQLSALRLGKELHCFALK--AHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVA 478
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWM 161
N +I+GY +G +EA++LF K +
Sbjct: 479 SWNVIIAGYGIHGRGKEALELFEKML 504
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 137/563 (24%), Positives = 220/563 (39%), Gaps = 155/563 (27%)
Query: 6 VAPNGCTPPLVLKACVALPS-LLMGPRVHGQIFSLGF----LVC------YLFDGLFDRT 54
V P+ T VL+AC + + ++H +I GF LVC Y +G D
Sbjct: 107 VTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLA 166
Query: 55 IVFLDLYHLWSRTEWSAFGSFDGLLSN-EENE-------------------YGTALDCSC 94
+ + L W A S GL N E+E + + L
Sbjct: 167 KLVFERLFLKDSVSWVAMIS--GLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACT 224
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR---------------NA 139
+E + G+ +HGF++K GL E+ + +L + N+ N+
Sbjct: 225 KIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNS 284
Query: 140 MISGYAKNGYAEEAVKLFPK------------------------------WMDYYIGKSE 169
+ISG A+ G+++ A++LF K + Y+ K
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMG 344
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHE--WSAF 223
+++I+ L+D+Y KC ++ A +F T ++VV+ + M+V YG L E W
Sbjct: 345 MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFL 404
Query: 224 G-SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA-- 277
+GL+ N+ Y + L L L+ G+ +H +IK G + +LI + A
Sbjct: 405 QMQIEGLMPNQYT-YPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKH 463
Query: 278 ----VCR------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKW---------------- 311
R + +V W AMI+GY ++ EA+KLF +
Sbjct: 464 GELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAI 523
Query: 312 -----------------MDYYIGKSEYRN--NVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
Y G SE + N + + VLI +Y+KCGS++ A F
Sbjct: 524 SACAGIQALNQGQQIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMP 583
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK 412
+K+VV +AM GY HG G E LF +++ G+ P H
Sbjct: 584 EKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNH-------------------VT 624
Query: 413 FIMNMPIELRLSVRRALLSAWKI 435
F+ MPIE + R LLSA +
Sbjct: 625 FVGEMPIEPDAMIWRTLLSACTV 647
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 163/413 (39%), Gaps = 107/413 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
M + V P VL AC + +G ++HG I G VC L+ R
Sbjct: 204 MHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGN 263
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSN--EENEYGTAL-------------DCSCDLEFLE- 100
+ ++S+ S++ L+S + AL DC L
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323
Query: 101 --------QGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVT 135
+GK +H ++IK+G+ SDL+I + + Y NV
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMS--SDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381
Query: 136 LRNAMISGYAKNGYAEEAVKLF---------PKWMDY---------------------YI 165
L N M+ Y + G E+ +F P Y +
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
KS ++ NV V +VLIDMYAK G +D A R ++DVV +AMI GY H+ F
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDL--FAE 499
Query: 226 FDGLLSNEENE--------YGTALDCSCDLEFLEQGKIVH------GFM--IKLGLELES 269
L EN+ + +A+ ++ L QG+ +H G+ + +G L S
Sbjct: 500 ALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALAS 559
Query: 270 DLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++LI+L + C + NV WNAMI+GY+++GY EAV LF +
Sbjct: 560 NVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEE 612
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 31/137 (22%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------GKSEYR----- 322
NV+ WN +ISG A + + LF + + GK+ ++
Sbjct: 75 NVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQI 134
Query: 323 ----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
++ +V LID+Y+K G VDLA + F+R KD V AM G +G
Sbjct: 135 HAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGRE 194
Query: 373 EEGWVLFHHIRKHGIEP 389
+E +LF + K + P
Sbjct: 195 DEAILLFCQMHKSAVIP 211
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 136/601 (22%), Positives = 234/601 (38%), Gaps = 179/601 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVC-------YL 46
P+ T ++LK+C+ + +G VH ++ G + C +
Sbjct: 24 PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83
Query: 47 FDGLFDRTIVFLDLYHLWS---------RTEWSAFGSFDGLLS----NEENEYGTALDCS 93
F+G+ ++ DL WS EW A +F +L E + +
Sbjct: 84 FEGMGNKR----DLVS-WSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRAC 138
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------------QPNVT 135
+ + G+I++GF++K G LE+D+ + + + + N+
Sbjct: 139 SNANYAWVGEIIYGFVVKTGY-LEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLV 197
Query: 136 LRNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKSEYRN- 172
MI+ +A+ G A +A+ LF P Y +GK +
Sbjct: 198 TWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRV 257
Query: 173 -------NVIVNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE 219
+V V L+DMYAKC GSVD + F++ + +V+ +A+I Y G +
Sbjct: 258 IRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECD 317
Query: 220 WSAFGSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLL 272
A F ++S + + L +L G+ V+ + +KLG+ + L
Sbjct: 318 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 377
Query: 273 ISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG--- 317
IS+ A ++ N+ +NA++ GYAKN +EEA LF + D IG
Sbjct: 378 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 437
Query: 318 ---------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
K Y++N + LI MY++CG+++ A F+
Sbjct: 438 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 497
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI---------------------------- 382
D++V+ ++M G+ HG +FH +
Sbjct: 498 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 557
Query: 383 --------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
++HGI PR +HYA +VDLL R+G A +FI +MP+ V R LL A +
Sbjct: 558 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 617
Query: 435 I 435
+
Sbjct: 618 V 618
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 136/601 (22%), Positives = 234/601 (38%), Gaps = 179/601 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVC-------YL 46
P+ T ++LK+C+ + +G VH ++ G + C +
Sbjct: 42 PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101
Query: 47 FDGLFDRTIVFLDLYHLWS---------RTEWSAFGSFDGLLS----NEENEYGTALDCS 93
F+G+ ++ DL WS EW A +F +L E + +
Sbjct: 102 FEGMGNKR----DLVS-WSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRAC 156
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------------QPNVT 135
+ + G+I++GF++K G LE+D+ + + + + N+
Sbjct: 157 SNANYAWVGEIIYGFVVKTGY-LEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLV 215
Query: 136 LRNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKSEYRN- 172
MI+ +A+ G A +A+ LF P Y +GK +
Sbjct: 216 TWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRV 275
Query: 173 -------NVIVNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE 219
+V V L+DMYAKC GSVD + F++ + +V+ +A+I Y G +
Sbjct: 276 IRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECD 335
Query: 220 WSAFGSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLL 272
A F ++S + + L +L G+ V+ + +KLG+ + L
Sbjct: 336 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 395
Query: 273 ISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG--- 317
IS+ A ++ N+ +NA++ GYAKN +EEA LF + D IG
Sbjct: 396 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 455
Query: 318 ---------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
K Y++N + LI MY++CG+++ A F+
Sbjct: 456 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 515
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI---------------------------- 382
D++V+ ++M G+ HG +FH +
Sbjct: 516 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 575
Query: 383 --------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
++HGI PR +HYA +VDLL R+G A +FI +MP+ V R LL A +
Sbjct: 576 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 635
Query: 435 I 435
+
Sbjct: 636 V 636
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 172/425 (40%), Gaps = 124/425 (29%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF--------PKWMDYY------------------ 164
P+ + N MI GYA++ EAV L+ P +D Y
Sbjct: 73 NPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVP--VDNYTYPFVLAACARLGAVKLG 130
Query: 165 ------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
+ K+ + +++ V LI Y CGS A FD + +DVV + MI +
Sbjct: 131 RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNK 190
Query: 216 GLHEWSAFGSFDGL-----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-- 268
GL E AF D + L +E + + L LE+GK +H + +LGL+
Sbjct: 191 GLSE-KAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLR 249
Query: 269 -SDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPK----- 310
++ ++ + C + +V W +M+SG AK+GY +EA+ LF K
Sbjct: 250 VNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNK 309
Query: 311 -------------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
++ I K E ++++ T L+DMYAKCGS+DLA
Sbjct: 310 IELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLAL 369
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGE-------------------------------- 373
F R ++V +A+ G +HG GE
Sbjct: 370 QVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAG 429
Query: 374 ---EGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
EG +F ++ K IEPR +HY VVDLL RA + A FI NMPI+ + L
Sbjct: 430 LVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATL 489
Query: 430 LSAWK 434
L A +
Sbjct: 490 LGACR 494
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 74/281 (26%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF---------------------LVCYLFDGL 50
T P VL AC L ++ +G R H ++ GF C +FD
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172
Query: 51 FDRTIVFLDLY---HLWSRTEWSAFGSFDGL-----LSNEENEYGTALDCSCDLEFLEQG 102
R +V ++ HL AF D + L +E + + L LE+G
Sbjct: 173 TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232
Query: 103 KIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGYAKN 147
K +H + +LGL+ ++ ++ + C + +V +M+SG AK+
Sbjct: 233 KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKS 292
Query: 148 GYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVIVN 177
GY +EA+ LF K++ I K E ++++
Sbjct: 293 GYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLE 352
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
T L+DMYAKCGS+DLA F R ++V +A+I G +H
Sbjct: 353 TALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMH 393
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/430 (24%), Positives = 181/430 (42%), Gaps = 105/430 (24%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS------------LTAVCRY-----QP 132
+ + ++ L G+ +HG IK + SD+ ++ L + C+ +
Sbjct: 140 IKAAAEVSSLSLGQSLHGMAIKSAVG--SDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 197
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMD------------------------------ 162
+V N+MI+G+ + G ++A++LF K
Sbjct: 198 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVC 257
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-WS 221
YI ++ N+ + ++DMY KCGS++ A FD +KD V + M+ GY + E +
Sbjct: 258 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 317
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
A + ++ AL + + + GK ++ L+L+ ++ ++
Sbjct: 318 AAREVLNAMPKKDIVAWNALISA----YEQNGKPNEALLVFHELQLQKNIKLN------- 366
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+TL + + S A+ G E +W+ YI K+ + N V + LI MY+KCG +
Sbjct: 367 --QITLVSTL-SACAQVGALE-----LGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDL 418
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK----------------- 384
+ A F+ +DV + SAM G +HG G E +F+ +++
Sbjct: 419 EKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCAC 478
Query: 385 -------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
+GI P +HYA +VD+L R+GY A KFI MPI SV
Sbjct: 479 SHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV 538
Query: 426 RRALLSAWKI 435
ALL A KI
Sbjct: 539 WGALLGACKI 548
>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 559
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 124/508 (24%), Positives = 198/508 (38%), Gaps = 136/508 (26%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLG-----LELESDLLI-----SLTAVCRY----- 130
Y + L C QGK VHG + L L + L+I A R
Sbjct: 14 YSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGM 73
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYY---------------- 164
+V AM+SGYA+NG EA++LF P Y
Sbjct: 74 PHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGE 133
Query: 165 -----IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GL 217
K + ++ V + L+DM+ +CGSV+ A F KDVV +A+I G+
Sbjct: 134 QVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERG 193
Query: 218 HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
H+ A G F +L + G+AL + +++H +IKLG E ++
Sbjct: 194 HDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIG 253
Query: 274 SLT---AVCRY------------QPNVTLWNAMISGYAKN-GYAEEAVKLFPK------W 311
SL A CR +P++ A+ISGY + Y+E+A++LF K W
Sbjct: 254 SLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHRKGLW 313
Query: 312 MD------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+D Y+ K + ++ ++ L+DMYAK G A
Sbjct: 314 IDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSDAKRA 373
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-------------------------- 381
FD ++V+ +++ G +G GE+ LF+
Sbjct: 374 FDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLT 433
Query: 382 ----------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+ ++GI+PR +HY+ +DLLAR G A+K + ++ S+ A+L
Sbjct: 434 NKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLG 493
Query: 432 AWKI--PMQQWENMLQTIRGIDEGEKTD 457
A K+ M E + + ID G +
Sbjct: 494 ACKLHGNMLLGETAAKNLFSIDPGSSVN 521
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 168/395 (42%), Gaps = 95/395 (24%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
++PN ++++ +A G A + W+ + + NV V T L+DMY+K G
Sbjct: 118 FKPNAVTISSVLPAFANLGLIRIAKSVHCFWV-----RGGFEGNVFVETALVDMYSKFGC 172
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFD-----GLLSNEENEYGTALD 242
+ +A F+ +++VV +A++ GY H +S A F+ GLL + + +
Sbjct: 173 MGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIM-SLIP 231
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELES-------DLLISLTAVCRYQ--------PNVTL 287
S + L+ G +HGF+I+ G E + D+ +S V +V
Sbjct: 232 ASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAA 291
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYY---------IG--------------------- 317
W M++G++ + + A+K F K + +G
Sbjct: 292 WTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALA 351
Query: 318 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
K+ + NN+ V + +IDMYA CG+++ A FF +KDVV +AM G G++G G +
Sbjct: 352 IKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAI 411
Query: 377 VLFHHIRKHGIEPRH------------------------------------QHYARVVDL 400
LF ++ G++P QHYA V+D+
Sbjct: 412 DLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDI 471
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L RAG + A+ FI NMP + V LL A +I
Sbjct: 472 LGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRI 506
>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 164/426 (38%), Gaps = 129/426 (30%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-------------------- 172
NV +M+SG +NG+AEE + LF + + + SEY
Sbjct: 187 NVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVH 246
Query: 173 ----------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
N + ++DMY KCG V+ A FD D+V+ + MIVGY +
Sbjct: 247 GSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGY-----TQ 301
Query: 223 FGS-FDGLLSNEENEY----------GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
GS D LL + ++ T L S L L G+++H +KL L +E+D+
Sbjct: 302 NGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKL-LVIENDV 360
Query: 272 ----LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP------ 309
L+ + A C+ +V WN++I+GY +N EA+ LF
Sbjct: 361 VMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQG 420
Query: 310 ------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
K Y K + +NV VNT L+++Y KC + A
Sbjct: 421 SSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQ 480
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------- 391
F +++ V AM GYG+ G L + + K I+P
Sbjct: 481 RVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTG 540
Query: 392 ----------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
+HYA +VD+LARAG A +FI MP+ +S+ A
Sbjct: 541 MVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAF 600
Query: 430 LSAWKI 435
L K+
Sbjct: 601 LHGCKL 606
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 125/296 (42%), Gaps = 60/296 (20%)
Query: 153 AVKLFPKWMDYYIGKSEYRNNV-------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
A+K + D+ G+ + N V V L+DMYAK G ++ A FDR L ++V
Sbjct: 129 ALKASVRSADFRYGRRLHCNAVKAGGADGFVMNCLVDMYAKAGDLENARKVFDRILGRNV 188
Query: 206 VMRSAMIVGYGLHEWSAFG-------SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 258
V ++M+ G + ++ G + +L +E + C+ L L QG+ VHG
Sbjct: 189 VSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTM-LGSLHQGRWVHG 247
Query: 259 FMIKLGLELES-------DLLISLTAVCRYQP--------NVTLWNAMISGYAKNGYAEE 303
+IK G+ D+ + V + ++ LW MI GY +NG +
Sbjct: 248 SVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLD 307
Query: 304 AVKLFPKWMDYYI------------GKSEYRN------------------NVIVNTVLID 333
A+ LF +I ++ RN N +V L+D
Sbjct: 308 ALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVD 367
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
MYAKC ++ A F R +KDVV +++ GY + +G E +LF +R G P
Sbjct: 368 MYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSP 423
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 154/393 (39%), Gaps = 102/393 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD------- 48
M+ V P+ T VL AC L SL G VHG + G F+ + D
Sbjct: 214 MREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGE 273
Query: 49 -----GLFDRTIVFLDLYHLWSR--TEWSAFGS-FDGLLSNEENEY----------GTAL 90
LFD + F+DL LW+ ++ GS D LL + ++ T L
Sbjct: 274 VEDARRLFDE-LGFVDLV-LWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVL 331
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR------------YQPNV 134
S L L G+++H +KL L +E+D+ L+ + A C+ +V
Sbjct: 332 SASAQLRNLSLGRLIHAMSVKL-LVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDV 390
Query: 135 TLRNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 164
N++I+GY +N EA+ LF K Y
Sbjct: 391 VTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTY 450
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
K + +NV VNT L+++Y KC + A F +++ V AMI GYG+ SA G
Sbjct: 451 AVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSA-G 509
Query: 225 SFDGLLSN------EENEYG-TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
S D LL+ + NE T++ +C H M+ +G S+
Sbjct: 510 SID-LLNKMLKDNIQPNEVVFTSILSTCS----------HTGMVSVG----KMCFDSMAQ 554
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
P++ + M+ A+ G EEA++ K
Sbjct: 555 YFNITPSMKHYACMVDVLARAGNLEEALEFIQK 587
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 304 AVKLFPKWMDYYIGKSEYRNNV-------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
A+K + D+ G+ + N V V L+DMYAK G ++ A FDR L ++V
Sbjct: 129 ALKASVRSADFRYGRRLHCNAVKAGGADGFVMNCLVDMYAKAGDLENARKVFDRILGRNV 188
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
V ++M G +G EEG LF+ +R+ + P A V+
Sbjct: 189 VSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVL 230
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 145/348 (41%), Gaps = 94/348 (27%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237
L+DMYAKCG +D A + FD + VV +++I Y S L +E +
Sbjct: 37 NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAI---RLFHEMDRE 93
Query: 238 GTALD----------CSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQ-- 282
G + D C+C+ LE GK VH ++ + ++ + L+ + A C
Sbjct: 94 GVSPDIFTITTVLHACACNGS-LENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMED 152
Query: 283 ----------PNVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
++ WN MI GY+KN EA+ LF
Sbjct: 153 ANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASL 212
Query: 310 ------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
K + +I ++ + ++ V L+DMY KCG LA + FD KD++ + M
Sbjct: 213 ASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMI 272
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEP---------------------------------- 389
GYG+HG G F+ +R+ GIEP
Sbjct: 273 AGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNV 332
Query: 390 --RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +HYA +VDLLAR+G A+KFI +MPIE ++ ALLS +I
Sbjct: 333 KPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRI 380
>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
Length = 838
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 187/483 (38%), Gaps = 138/483 (28%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPN 133
AL L L GK++HGF+ K+ ++ LI L C +P+
Sbjct: 248 ALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPD 307
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWM-----------------------DYYIGKSEY 170
V L ++ISGY ++G E A+ F + + ++ +G+S +
Sbjct: 308 VVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVH 367
Query: 171 --------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EW 220
N + + L+ +Y K GS+ A F DKD++ S M+ Y + E
Sbjct: 368 GFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAET 427
Query: 221 SAFGSFDGLLSNE-ENEYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELE---SDLL 272
F+ +L + + T + C+C + LE+G +H + G E+E S L
Sbjct: 428 DVLDLFNEMLDKRIKPNWVTVVSVLRACAC-ISNLEEGMKIHELAVNYGFEMETTVSTAL 486
Query: 273 ISLTAVCRYQP-------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----- 314
+ + C + P +V W + SGYA NG E++ +F +
Sbjct: 487 MDMYMKC-FSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPD 545
Query: 315 -------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
++ K+ + NN + LI++YAKC S++ A F
Sbjct: 546 AIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFK 605
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH---------------------------- 381
KDVV S++ YG HG GEE LF+
Sbjct: 606 GMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIK 665
Query: 382 ---------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+ K+ ++P +HYA +VDLL R G + A I NMP++ + ALL A
Sbjct: 666 EGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGA 725
Query: 433 WKI 435
+I
Sbjct: 726 CRI 728
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 129/319 (40%), Gaps = 66/319 (20%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EW----SAFGSFDGL--L 230
T L +YA+ S+ A F T + V + +A++ Y EW S F + + +
Sbjct: 175 TKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSV 234
Query: 231 SNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY-- 281
S EE AL L L GK++HGF+ K+ ++ LI L C
Sbjct: 235 SIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMN 294
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------- 312
+P+V LW ++ISGY ++G E A+ F + +
Sbjct: 295 DAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASAC 354
Query: 313 ----DYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
++ +G+S + N + + L+ +Y K GS+ A F DKD++ S
Sbjct: 355 AQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWS 414
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL-ARAGYSN-----HAFKFI 414
M Y +G + LF+ + I+P ++ VV +L A A SN +
Sbjct: 415 TMVACYADNGAETDVLDLFNEMLDKRIKP---NWVTVVSVLRACACISNLEEGMKIHELA 471
Query: 415 MNMPIELRLSVRRALLSAW 433
+N E+ +V AL+ +
Sbjct: 472 VNYGFEMETTVSTALMDMY 490
>gi|449522919|ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like, partial [Cucumis sativus]
Length = 670
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 142/314 (45%), Gaps = 54/314 (17%)
Query: 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
F K M ++ + V T LIDMY K G V+ A F+ +++V + MI GY
Sbjct: 241 FGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYV 300
Query: 217 LHEW--SAFGSFDGLLSNEEN-EYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELES 269
+ F L+ ++ + GT + CS + L+ GKI+HGF+ + GL+L
Sbjct: 301 QNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTAD-LDGGKILHGFIYRRGLDLNL 359
Query: 270 DL---LISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314
L ++ L A C NV W AM+ G A+NG+A +A+KLF + +
Sbjct: 360 VLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNE 419
Query: 315 YI----------------------GKS--------EYRNNVIVNTVLIDMYAKCGSVDLA 344
+ G+S + + V+V T LIDMYAKC ++ A
Sbjct: 420 RVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSA 479
Query: 345 PMFFDRTLD-KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR 403
M F L KDV++ ++M GYG+HGLG + ++H + + G++P + ++ +
Sbjct: 480 EMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSH 539
Query: 404 AGYSNHAFKFIMNM 417
+G NM
Sbjct: 540 SGLVEEGIALFQNM 553
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 123/500 (24%), Positives = 197/500 (39%), Gaps = 131/500 (26%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFS--------LGFLVCYLFDGLFDRTI-VFLDLYH 62
T LKAC+ L MG V G LG + +GLF +FLD+
Sbjct: 157 TCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFLEGLFREGYNLFLDM-- 214
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLL 121
L+++ E SA +L SC ++ L GK +HGF++ G+ ++ +L
Sbjct: 215 LYNKIEPSAVTMI-------------SLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVL 261
Query: 122 ISLTAV-CRY--------------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG 166
+L + C+ N+ N MISGY +NG E ++LF K + +G
Sbjct: 262 TTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVG 321
Query: 167 KSE--------------------------YRN----NVIVNTVLIDMYAKCGSVDLAPMF 196
YR N+++ T ++D+YAKCGS+ A
Sbjct: 322 FDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSV 381
Query: 197 FDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNEENEYG-----TALDCSCDLEF 249
F+R +K+V+ +AM+VG H A FD + NE + + + C L
Sbjct: 382 FERMKNKNVISWTAMLVGLAQNGHARDALKLFDQ-MQNERVTFNALTLVSLVYCCTLLGL 440
Query: 250 LEQGKIVHGFMIKLGLELES---DLLISLTAVC----------RY---QPNVTLWNAMIS 293
L +G+ VH + + E LI + A C +Y +V L+N+MIS
Sbjct: 441 LREGRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMIS 500
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
GY +G +A+ ++ + + +E + + + + C
Sbjct: 501 GYGMHGLGHKALCVYHRMNREGLQPNE--------STFVSLLSACSH------------- 539
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFK 412
GL EEG LF + ++ H P + YA +VDLL+RAG A +
Sbjct: 540 ---------------SGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEE 584
Query: 413 FIMNMPIELRLSVRRALLSA 432
I MP + LL+
Sbjct: 585 LINQMPFTPTSGILETLLNG 604
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 129/306 (42%), Gaps = 50/306 (16%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
QP L NAM++GY +N + ++L ++ Y N + + + + G +
Sbjct: 117 QPKTVLCNAMVNGYLQNERYNDCIELLKMMSRCHLEFDSYTCNFALKACMFLLDYEMG-M 175
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT---ALDCSC-D 246
++ + + L + S+++ + F +L N+ +L SC +
Sbjct: 176 EVIGLAVCKGLAGGRFLGSSILNFLEGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGE 235
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRY--------------QPNVTLWNAM 291
+ L GK +HGF++ G+ ++ +L +L + C+ N+ WN M
Sbjct: 236 MRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVM 295
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------------YRN-- 323
ISGY +NG E ++LF K + +G YR
Sbjct: 296 ISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGL 355
Query: 324 --NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
N+++ T ++D+YAKCGS+ A F+R +K+V+ +AM VG +G + LF
Sbjct: 356 DLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQ 415
Query: 382 IRKHGI 387
++ +
Sbjct: 416 MQNERV 421
>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 142/314 (45%), Gaps = 54/314 (17%)
Query: 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
F K M ++ + V T LIDMY K G V+ A F+ +++V + MI GY
Sbjct: 274 FGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYV 333
Query: 217 LHEW--SAFGSFDGLLSNEEN-EYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELES 269
+ F L+ ++ + GT + CS + L+ GKI+HGF+ + GL+L
Sbjct: 334 QNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTAD-LDGGKILHGFIYRRGLDLNL 392
Query: 270 DL---LISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314
L ++ L A C NV W AM+ G A+NG+A +A+KLF + +
Sbjct: 393 VLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNE 452
Query: 315 YI----------------------GKS--------EYRNNVIVNTVLIDMYAKCGSVDLA 344
+ G+S + + V+V T LIDMYAKC ++ A
Sbjct: 453 RVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSA 512
Query: 345 PMFFDRTLD-KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR 403
M F L KDV++ ++M GYG+HGLG + ++H + + G++P + ++ +
Sbjct: 513 EMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSH 572
Query: 404 AGYSNHAFKFIMNM 417
+G NM
Sbjct: 573 SGLVEEGIALFQNM 586
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 166/410 (40%), Gaps = 107/410 (26%)
Query: 93 SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRY--------------QPNVTL 136
SC ++ L GK +HGF++ G+ ++ +L +L + C+ N+
Sbjct: 265 SCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVS 324
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------------Y 170
N MISGY +NG E ++LF K + +G Y
Sbjct: 325 WNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIY 384
Query: 171 RN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFG 224
R N+++ T ++D+YAKCGS+ A F+R +K+V+ +AM+VG H A
Sbjct: 385 RRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALK 444
Query: 225 SFDGLLSNEENEYG-----TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLT 276
FD + NE + + + C L L +G+ VH + + E + LI +
Sbjct: 445 LFDQ-MQNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTALIDMY 503
Query: 277 AVC----------RY---QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323
A C +Y +V L+N+MISGY +G +A+ ++ + + +E
Sbjct: 504 AKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNE--- 560
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-I 382
+ + + + C GL EEG LF + +
Sbjct: 561 -----STFVSLLSACSH----------------------------SGLVEEGIALFQNMV 587
Query: 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+ H P + YA +VDLL+RAG A + I MP + LL+
Sbjct: 588 KDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGILETLLNG 637
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 138/339 (40%), Gaps = 83/339 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV---------------- 174
QP L NAM++GY +N + ++L ++ Y N
Sbjct: 117 QPKTVLCNAMVNGYLQNERYNDCIELLKMMSRCHLEFDSYTCNFALKACMFLLDYEMGME 176
Query: 175 --------------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GL 217
+ + +++ K G + A FF + ++KDVV + MI G+ GL
Sbjct: 177 VIGLAVCKGLAGGRFLGSSILNFLVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGL 236
Query: 218 HEWSAFGSFDGLLSNEENEYGT---ALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLI 273
+ F +L N+ +L SC ++ L GK +HGF++ G+ ++ +L
Sbjct: 237 FR-EGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLT 295
Query: 274 SLTAV-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 318
+L + C+ N+ WN MISGY +NG E ++LF K + +G
Sbjct: 296 TLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGF 355
Query: 319 SE--------------------------YRN----NVIVNTVLIDMYAKCGSVDLAPMFF 348
YR N+++ T ++D+YAKCGS+ A F
Sbjct: 356 DSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVF 415
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+R +K+V+ +AM VG +G + LF ++ +
Sbjct: 416 ERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERV 454
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 172/416 (41%), Gaps = 128/416 (30%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
+++G+ VHGF+I+ ++ E D L A++ YA G + K+F
Sbjct: 515 VKEGRSVHGFVIRRAMDPELDFLGP---------------ALMELYADTGNLRDCHKVFE 559
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ ++ LI ++ + G + A + F V M++
Sbjct: 560 TIKE---------KTILSWNTLISIFTRNGQPEEALLLF-------VQMQT--------- 594
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--ELESDLLISLT 276
GL+ + + + C + F + G +HG++IK G + + LI +
Sbjct: 595 --------QGLMPDSYSLASSLSACGT-ISFSQLGAQIHGYIIKTGNFNDFVQNALIDMY 645
Query: 277 AVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP--------------- 309
A C + + ++ WN+MI G+++NGY+ EA+ LF
Sbjct: 646 AKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFL 705
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
KW+ + + R + ++T L DMY+KCG + +A FDR ++
Sbjct: 706 SVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER 765
Query: 355 DVVMRSAMTVGYGLHG------------LG-----------------------EEGWVLF 379
+V S M GYG+HG LG EEG + F
Sbjct: 766 SIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYF 825
Query: 380 HHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ + + G+EP+H H+A +VDLL+RAG N A++ I ++P S+ ALL+ +I
Sbjct: 826 NSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRI 881
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 112/271 (41%), Gaps = 78/271 (28%)
Query: 96 LEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVCRY------------QPNVTLRNAMI 141
+ F + G +HG++IK G + + LI + A C + + ++ N+MI
Sbjct: 614 ISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMI 673
Query: 142 SGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYR 171
G+++NGY+ EA+ LF KW+ + + R
Sbjct: 674 CGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLR 733
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
+ ++T L DMY+KCG + +A FDR ++ +V S MI GYG+H G + +S
Sbjct: 734 KDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMH-----GQINATIS 788
Query: 232 NEENEYGTALDCSCDLEFL------------EQGKIVHGFMIKLGLELESDLLISLTAVC 279
G+ + + D+ F+ E+GK+ M + G+E + D + +
Sbjct: 789 LFNQMLGSGIKPN-DITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLL 847
Query: 280 R----------------YQPNVTLWNAMISG 294
+ N ++W A+++G
Sbjct: 848 SRAGDLNGAYQIITSLPFPANSSIWGALLNG 878
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 130/599 (21%), Positives = 225/599 (37%), Gaps = 168/599 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF--------------LVCYL 46
M++ + + T +VLKAC + +G +VH +GF C
Sbjct: 161 MRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKK 220
Query: 47 FDGLFDRTIVFLDLYHLWSRTEWSAFGS------------------FDGLLSNEENEYGT 88
D F+ +F ++ S WSA + D + + + +
Sbjct: 221 LDHAFN---IFCEMPERNSVC-WSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFAS 276
Query: 89 ALDCSCDLEFLEQGKIVHGFMIK-------------LGLELESDLLISLTAVCRYQPNVT 135
A L E G +H + +K L + + D ++ V PN T
Sbjct: 277 AFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPT 336
Query: 136 LR--NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR---------------------- 171
+ NA+I GYA+ EA+++F Y+ E
Sbjct: 337 RQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHG 396
Query: 172 --------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--S 221
N+ V ++DMYAKCG++ A + FD KD V +A+I + +E
Sbjct: 397 LAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEE 456
Query: 222 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
F +L + ++ +G+ + + L G VHG +IK G+ L+ +I
Sbjct: 457 TLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIID 516
Query: 275 LTAVC-----------RYQPNVTL-WNAMISGYAKNGYAEEAVKLFPKWMDY-------- 314
+ C R + T+ WN++ISG++ E A+ F + +
Sbjct: 517 MYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFT 576
Query: 315 ----------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
I K + ++V + + ++DMY+KCG++ + + F++
Sbjct: 577 YATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP 636
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLF--------------------------------H 380
+D V SAM Y HGLGE+ LF H
Sbjct: 637 KRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLH 696
Query: 381 HIRK----HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ R+ +G++P+ +HY+ +VDLL R+G N A + I +MP E + R LL ++
Sbjct: 697 YFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRL 755
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/469 (20%), Positives = 174/469 (37%), Gaps = 110/469 (23%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFL-VCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
+ + C L ++ G + H QI GF+ ++ + L L+L + AF
Sbjct: 44 IFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNY--------AFNV 95
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 134
FD + + + T ++ G+ +E L S+ + +V
Sbjct: 96 FDKMPQRDVISWNT---------------MIFGYAGVGNMEFAQFLFDSMP-----ERDV 135
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIG------ 166
N+M+S Y +NG+ +++++F K DY +G
Sbjct: 136 VSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCL 195
Query: 167 --KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
+ + ++V+ T L+DMY+ C +D A F +++ V SA+I GY ++ G
Sbjct: 196 AIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEG 255
Query: 225 ------SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-------------LGL 265
D + + + +A L E G +H + +K L +
Sbjct: 256 LKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDM 315
Query: 266 ELESDLLISLTAVCRYQPNVTLW--NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR- 322
+ D ++ V PN T NA+I GYA+ EA+++F Y+ E
Sbjct: 316 YAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISL 375
Query: 323 -----------------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
N+ V ++DMYAKCG++ A + FD
Sbjct: 376 SGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEI 435
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
KD V +A+ + + EE LF + + +EP + VV A
Sbjct: 436 KDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACA 484
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 129/329 (39%), Gaps = 87/329 (26%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDLYH 62
P+ T V+KAC +L G VHG++ G F+ + D ++ + + ++
Sbjct: 471 PDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIID-MYCKCGMLVEAEK 529
Query: 63 LWSRTEWSAFGSFDGLLSNEENE------------------------YGTALDCSCDLEF 98
+ R E S++ ++S +E Y T LD +L
Sbjct: 530 IHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLAT 589
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN-----------------AMI 141
+E GK +HG ++K L+L SD+ I+ T V Y +++ AMI
Sbjct: 590 VELGKQIHGQILK--LQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMI 647
Query: 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201
YA +G E+A+KLF + + +N +T+ I + C + F D+
Sbjct: 648 CAYAYHGLGEDAIKLFEEM--------QLQNVKPNHTIFISVLRACAHMG----FVDK-- 693
Query: 202 DKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL-EQGKIVHGFM 260
GLH + S GL E+ SC ++ L G++
Sbjct: 694 --------------GLHYFREMRSHYGLDPQMEHY-------SCMVDLLGRSGQVNEALE 732
Query: 261 IKLGLELESDLLI--SLTAVCRYQPNVTL 287
+ + E+D +I +L +CR Q NV +
Sbjct: 733 LIESMPFEADDVIWRTLLGICRLQGNVEV 761
>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
Length = 749
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 162/401 (40%), Gaps = 121/401 (30%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWM------DYYIGKSEYR-------------------- 171
N+MI+ Y +NG ++EA+ ++ + + D + S ++
Sbjct: 146 NSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVV 205
Query: 172 -----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG 224
+NV V + L+DMYAK G + A + D+ + KDVV+ +A+IVGY H + +
Sbjct: 206 LGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQ 265
Query: 225 SFDGLLSN--EENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F + E NEY + L C +LE L G+++HG ++K GLE
Sbjct: 266 VFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLE-------------- 311
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI-------------- 326
+ W ++I G +NG E A+ F + + I + + + +
Sbjct: 312 ---SAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGK 368
Query: 327 ----------------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
V LID Y KCGS ++A F+ L+ DVV ++M Y +G
Sbjct: 369 QIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNG 428
Query: 371 LGEEGWVLFHHIRKHGIEPRH------------------------------------QHY 394
G E LF ++ G+EP + HY
Sbjct: 429 FGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHY 488
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A +VDLL RAG A I + I + + R LLSA +I
Sbjct: 489 ACMVDLLGRAGRLKEAEMLINQVNIS-DVVIWRTLLSACRI 528
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 116/312 (37%), Gaps = 80/312 (25%)
Query: 82 EENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQ----- 131
E NEY + L C +LE L G+++HG ++K GLE + +++ L R +
Sbjct: 276 EANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLK 335
Query: 132 ----------PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
PN ++++ + E+ ++ M + + +Y V LI
Sbjct: 336 FRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKY-----VGAALI 390
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTAL 241
D Y KCGS ++A F+ L+ DVV ++MI Y +N +G
Sbjct: 391 DFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYA-----------------QNGFGH-- 431
Query: 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA 301
E ++ G M GLE PN W ++S G
Sbjct: 432 ---------EALQLFSG-MKDTGLE----------------PNNVTWLGVLSACNNAGLL 465
Query: 302 EEAVKLFPKWM---DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
EE +F + + K Y ++D+ + G + A M ++ DVV+
Sbjct: 466 EEGCHIFSSARNSGNIELTKDHY-------ACMVDLLGRAGRLKEAEMLINQVNISDVVI 518
Query: 359 RSAMTVGYGLHG 370
+ +HG
Sbjct: 519 WRTLLSACRIHG 530
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 40/240 (16%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF-----DGLLSN 232
LID Y KCGSV A FD + +V ++MI Y + S A + DG+L +
Sbjct: 117 LIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPD 176
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ---------- 282
E + + DL + +G+ HG + LG+ + S++ + V Y
Sbjct: 177 EFT-FSSVFKAFSDLGLVHEGQRAHGQSVVLGVGV-SNVFVGSALVDMYAKFGKMRDARL 234
Query: 283 -------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335
+V L+ A+I GY+ +G E++++F I +EY +++VL+
Sbjct: 235 VSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEY----TLSSVLV--- 287
Query: 336 AKCGSV-DLAPMFFDRTLDKDVVMRSAMT-----VGYGLHGLGEEGWVLFHHIRKHGIEP 389
CG++ DL L + SA+T VG +G E + F + + I P
Sbjct: 288 -CCGNLEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITP 346
>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 585
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 152/359 (42%), Gaps = 90/359 (25%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS 221
I K + N+ V T L+DMYAKC + A FD+ ++++V ++MIVG+ L++
Sbjct: 36 IHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYD-R 94
Query: 222 AFGSFDGLLSNE-----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
A G F +L + E + L ++ L G+ VHG ++K GL + ++ SL
Sbjct: 95 AVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLM 154
Query: 277 AV---CRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWM 312
+ CR+ +V WN ++ G+ +N EEA F P
Sbjct: 155 DMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEA 214
Query: 313 DY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ I K Y N+ + LI MYAKCGS+ A F+
Sbjct: 215 SFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI 274
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------- 391
D +V+ +AM Y LHG + LF H+ GIEP H
Sbjct: 275 EDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGL 334
Query: 392 ----------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HYA +VDLL RAG+ + A +FI +MP++ SV ALL A +
Sbjct: 335 AHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACR 393
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 85/229 (37%), Gaps = 55/229 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVCYLFD--- 48
V PN + VL AC + L G +VHG + G + C FD
Sbjct: 108 VIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGV 167
Query: 49 GLF----DRTIV--------FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDL 96
LF DR +V F+ + +G+L +E + + T L S L
Sbjct: 168 KLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEAS-FSTVLHSSASL 226
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL 156
L QG +H +IKLG Y N+ + ++I+ YAK G +A ++
Sbjct: 227 AALHQGTAIHDQIIKLG----------------YVKNMCILGSLITMYAKCGSLVDAYQV 270
Query: 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
F D+ NVI T +I Y G + F+ L + +
Sbjct: 271 FEGIEDH---------NVISWTAMISAYQLHGCANQVIELFEHMLSEGI 310
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 151/374 (40%), Gaps = 99/374 (26%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
+V R MISGY + G EA +LF + R NVI T +I Y + G VD+
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEM---------PRRNVISWTTMISGYVQNGQVDV 220
Query: 193 APMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGLLSNEENEYGTALDCSC-DLEF 249
A F+ +K+ V +AM++GY G A FD + + C+ L F
Sbjct: 221 ARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAM------PVKAVVACNAMILGF 274
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+ G++ + + + D W+AMI Y + G+ EA+ LF
Sbjct: 275 GQNGEVAKARQVFDQIREKDD---------------GTWSAMIKVYERKGFEVEALNLFA 319
Query: 310 ------------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ + + KS++ ++V V +VLI MY KCG
Sbjct: 320 LMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCG 379
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------------- 382
+ A FDR KD+VM +++ GY HGL EE +FH +
Sbjct: 380 DLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLS 439
Query: 383 -------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
K+ +EP+ +HYA +VDLL RAG N A I MP+E
Sbjct: 440 ACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADA 499
Query: 424 SVRRALLSAWKIPM 437
+ ALL A + M
Sbjct: 500 IIWGALLGACRTHM 513
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 110/279 (39%), Gaps = 36/279 (12%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ NV AM+ GY + G EA LF + + NV+ TV++ + +
Sbjct: 106 ERNVVSWTAMVRGYVQEGLVSEAETLFWQMPE---------KNVVSWTVMLGGLIQVRRI 156
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
D A FD KDVV R+ MI GY +G L+ E D +
Sbjct: 157 DEARGLFDIMPVKDVVARTNMISGY---------CQEGRLA----EARELFDEMPRRNVI 203
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G++ +++ L + + N W AM+ GY + G EEA +LF
Sbjct: 204 SWTTMISGYVQNGQVDVARKLFEVMP-----EKNEVSWTAMLMGYTQGGRIEEASELF-- 256
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
D K+ V+ +I + + G V A FD+ +KD SAM Y G
Sbjct: 257 --DAMPVKA-----VVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKG 309
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409
E LF +++ G++ V+ + A +H
Sbjct: 310 FEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDH 348
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 80/207 (38%), Gaps = 27/207 (13%)
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTA 240
I YA+ G ++ A FD DK +V ++M+ GY +N E
Sbjct: 23 IARYARIGQIESARRVFDEMPDKGIVSWNSMVAGY-------------FQNNRPREARYL 69
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300
D + + ++ G++ + ++ + NV W AM+ GY + G
Sbjct: 70 FDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMP-----ERNVVSWTAMVRGYVQEGL 124
Query: 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
EA LF + + NV+ TV++ + +D A FD KDVV R+
Sbjct: 125 VSEAETLFWQMPE---------KNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVART 175
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGI 387
M GY G E LF + + +
Sbjct: 176 NMISGYCQEGRLAEARELFDEMPRRNV 202
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 145/593 (24%), Positives = 219/593 (36%), Gaps = 162/593 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
M V + P VL AC + SL +G ++HG + LGF VC L+
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 338
Query: 57 FLDLYHLWSRTEWS---------------AFGS----------FDGLLSNEENEYGTALD 91
+ H++S +G DGL + +
Sbjct: 339 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVTL 136
CS D +G+ +H + KLG + + L++L A C NV L
Sbjct: 399 CSADGTLF-RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 457
Query: 137 RNAMISGYA-----KNGYA-------EEAVK---LFPKWM-------DYYIG-------- 166
N M+ Y +N + EE V +P + D +G
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
K+ ++ N V +VLIDMYAK G +D A R KDVV + MI GY + + A
Sbjct: 518 KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALT 577
Query: 225 SFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
+F +L +E G A+ L+ L++G+ +H G + + L++L +
Sbjct: 578 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS 637
Query: 278 VCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLF----------------- 308
C L WNA++SG+ ++G EEA+++F
Sbjct: 638 RCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGS 697
Query: 309 -------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + I K+ Y + V LI MYAKCGS+ A F K+
Sbjct: 698 AVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKN 757
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHI--------------------------------- 382
V +A+ Y HG G E F +
Sbjct: 758 EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 817
Query: 383 ---RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
++G+ P+ +HY VVD+L RAG + A +FI MPI+ V R LLSA
Sbjct: 818 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 113/459 (24%), Positives = 171/459 (37%), Gaps = 93/459 (20%)
Query: 6 VAPNGCTPPLVLKACVALP-SLLMGPRVHGQIFSLGFLV--CYLFDGLFDRTIVFLDLYH 62
+ PN T +L+ C+ SL G ++H QI LG C L + LFD + DLY
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGC-LSEKLFDFYLFKGDLY- 137
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
AF FD E E+ MIK EL S LI
Sbjct: 138 -------GAFKVFD--------------------EMPERTIFTWNKMIK---ELASRNLI 167
Query: 123 SLTA---VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
V NVT SG + + + I R++ +V
Sbjct: 168 GEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNP 227
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGL-LSNE 233
LID+Y++ G VDLA FD KD AMI G +E A F L +
Sbjct: 228 LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT 287
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------ 281
+ + L +E LE G+ +HG ++KLG SD + V Y
Sbjct: 288 PYAFSSVLSACKKIESLEIGEQLHGLVLKLG--FSSDTYVCNALVSLYFHLGNLISAEHI 345
Query: 282 -----QPNVTLWNAMISGYAKNGYAEEAVKLFPK-------------------------- 310
Q + +N +I+G ++ GY E+A++LF +
Sbjct: 346 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 405
Query: 311 ----WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ Y K + +N + L+++YAKC ++ A +F T ++VV+ + M V Y
Sbjct: 406 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465
Query: 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
GL + +F ++ I P Y ++ R G
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 143/521 (27%), Positives = 219/521 (42%), Gaps = 123/521 (23%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG----------FLVCYL-FDGLFDRT 54
V P+ T VL+AC L S+ G +HG I +G L Y F+GL D
Sbjct: 212 VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGR 271
Query: 55 IVFLDLYHLWSRTEW-------SAFGSFD---GLLSNEENEYG------TALDCSC---- 94
+F D L W S G ++ L N++ T++ +C
Sbjct: 272 RIF-DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLG 330
Query: 95 DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------------RYQPNVTLRN 138
DLEF GK VH +MI G E + S++LI++ A C + + +V+ N
Sbjct: 331 DLEF---GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW-N 386
Query: 139 AMISGYAKNGYAEEAVKLFP---------------------KWMDYYIGKS--------E 169
+MI+ Y +NG +EA+KLF + D ++GK
Sbjct: 387 SMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMG 446
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +N++V+ L+DMYAKCG + + F+ +D++ + +I E G +
Sbjct: 447 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGL--RM 504
Query: 230 LSNEENEYGTALDCSCDLEFL---------EQGKIVHGFMIKLGLELESDLLISLTAVCR 280
+S E G D + L L QGK +HG + KLGLE
Sbjct: 505 ISRMRTE-GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE-------------- 549
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+V + N +I Y+K G + ++F K +V+ T LI G
Sbjct: 550 --SDVPVGNVLIEMYSKCGSLRNSFQVF---------KLMKTKDVVTWTALISACGMYGE 598
Query: 341 VDLAPMFFDRT----LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYA 395
A F + D V A+ GL EEG FH ++K + IEPR +HYA
Sbjct: 599 GKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYA 658
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIP 436
VVDLL+R+ + A FI++MP++ S+ ALLSA ++
Sbjct: 659 CVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMS 699
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 144/345 (41%), Gaps = 60/345 (17%)
Query: 113 GLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 172
GL E+ L S T R QP+ ++I+ A E A + + +D G Y
Sbjct: 94 GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIG 153
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-----SAFGSFD 227
N LIDMY + +D A F+ +DVV +++I GY + + + F
Sbjct: 154 NA-----LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 208
Query: 228 GL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS---LTAVCRYQ- 282
L + + + L L +E+G I+HG + K+G++ D++++ L+ C++
Sbjct: 209 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK--KDVIVNNGLLSMYCKFNG 266
Query: 283 -------------PNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
+ WN MI GY++ G EE++KLF
Sbjct: 267 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQAC 326
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
K++ Y+ S Y + + +LI+MYAKCG++ + F KD V +
Sbjct: 327 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 386
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+M Y +G +E LF + K ++P Y ++ + + G
Sbjct: 387 SMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLG 430
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKL---------------FPK-------WMDYYIGKS-- 319
NV LWN++I NG EA+ L FP +D+ + KS
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138
Query: 320 ------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
+ +++ + LIDMY + +D A F+ +DVV +++ GY +G
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198
Query: 374 EGWVLFHHIRKHGIEP 389
E +++ R G+ P
Sbjct: 199 EALEIYYRFRNLGVVP 214
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 143/520 (27%), Positives = 218/520 (41%), Gaps = 123/520 (23%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG----------FLVCYL-FDGLFDRT 54
V P+ T VL+AC L S+ G +HG I +G L Y F+GL D
Sbjct: 271 VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGR 330
Query: 55 IVFLDLYHLWSRTEW-------SAFGSFD---GLLSNEENEYG------TALDCSC---- 94
+F D L W S G ++ L N++ T++ +C
Sbjct: 331 RIF-DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLG 389
Query: 95 DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------------RYQPNVTLRN 138
DLEF GK VH +MI G E + S++LI++ A C + + +V+ N
Sbjct: 390 DLEF---GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW-N 445
Query: 139 AMISGYAKNGYAEEAVKLF--------PKWMDYY---------------------IGKSE 169
+MI+ Y +NG +EA+KLF P + Y + K
Sbjct: 446 SMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMG 505
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +N++V+ L+DMYAKCG + + F+ +D++ + +I E G +
Sbjct: 506 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGL--RM 563
Query: 230 LSNEENEYGTALDCSCDLEFL---------EQGKIVHGFMIKLGLELESDLLISLTAVCR 280
+S E G D + L L QGK +HG + KLGLE
Sbjct: 564 ISRMRTE-GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE-------------- 608
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+V + N +I Y+K G + ++F K +V+ T LI G
Sbjct: 609 --SDVPVGNVLIEMYSKCGSLRNSFQVF---------KLMKTKDVVTWTALISACGMYGE 657
Query: 341 VDLAPMFFDRT----LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYA 395
A F + D V A+ GL EEG FH ++K + IEPR +HYA
Sbjct: 658 GKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYA 717
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VVDLL+R+ + A FI++MP++ S+ ALLSA ++
Sbjct: 718 CVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRM 757
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 143/345 (41%), Gaps = 60/345 (17%)
Query: 113 GLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 172
GL E+ L S T R QP+ ++I+ A E A + + + G Y
Sbjct: 153 GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIG 212
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-----SAFGSFD 227
N LIDMY + +D A F+ +DVV +++I GY + + + F
Sbjct: 213 NA-----LIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 267
Query: 228 GL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS---LTAVCRYQ- 282
L + + + L L +E+G I+HG + K+G++ D++++ L+ C++
Sbjct: 268 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK--KDVIVNNGLLSMYCKFNG 325
Query: 283 -------------PNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
+ WN MI GY++ G EE++KLF
Sbjct: 326 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQAC 385
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
K++ Y+ S Y + + +LI+MYAKCG++ + F KD V +
Sbjct: 386 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 445
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+M Y +G +E LF + K ++P Y ++ + + G
Sbjct: 446 SMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLG 489
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 30/136 (22%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKL---------------FPK-------WMDYYIGKS-- 319
NV WN++I NG EA+ L FP +D+ + KS
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197
Query: 320 ------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
+ +++ + LIDMY + +D A F+ +DVV +++ GY +G
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 257
Query: 374 EGWVLFHHIRKHGIEP 389
E +++ R G+ P
Sbjct: 258 EALEIYYRFRNLGVVP 273
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 164/418 (39%), Gaps = 144/418 (34%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------- 166
N+MISGY NG E + ++ + M Y+G
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMM--YLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277
Query: 167 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
KS + + + L+DMY+KCG +D A F++ +++VV ++MI GY WS
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWS---- 333
Query: 226 FDG---LLSNEENEYGTALDC--------SCDLE-FLEQGKIVHGFMIKLGLELESDLLI 273
DG LL E E G LD +C L+ GK VH + ++++ +
Sbjct: 334 -DGAIILLQQMEKE-GVKLDVVAITSILHACARSGSLDNGKDVHDY-------IKANNMA 384
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------ 309
S VC NA++ YAK G E A +F
Sbjct: 385 SNLFVC---------NALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTM 435
Query: 310 ----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
K + YI ++ Y ++ V L+D+Y KCG + LA + FD
Sbjct: 436 ACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPS 495
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------------ 389
KD+V + M GYG+HG G E F+ +R GIEP
Sbjct: 496 KDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRF 555
Query: 390 ------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +HYA +VDLL+R G + A+KFI +PI ++ ALL +I
Sbjct: 556 FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRI 613
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 137/349 (39%), Gaps = 90/349 (25%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---------- 128
E YG+ L L+ L GK VH + + ++ L L+S A C
Sbjct: 98 ETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157
Query: 129 --RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
+ NV L N M+S YAK G +E++ LF ++++ +
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIE 197
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD-----GLLSNEENEYG 238
+ A FD+ D+DV+ ++MI GY GL E G + G+ +
Sbjct: 198 GKRPESASELFDKLCDRDVISWNSMISGYVSNGLTE-RGLGIYKQMMYLGIDVDLATIIS 256
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQP 283
+ C+ + L GK VH IK E S+ L+ + + C +
Sbjct: 257 VLVGCA-NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
NV W +MI+GY ++G+++ A+ L K +
Sbjct: 316 NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH 375
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
YI + +N+ V L+DMYAKCGS++ A F + KD++ + M
Sbjct: 376 DYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM 424
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 35/171 (20%)
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---------- 279
E YG+ L L+ L GK VH + + ++ L L+S A C
Sbjct: 98 ETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+ NV LWN M+S YAK G +E++ LF ++++ +
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIE 197
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+ A FD+ D+DV+ ++M GY +GL E G ++ + GI+
Sbjct: 198 GKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 145/593 (24%), Positives = 219/593 (36%), Gaps = 162/593 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
M V + P VL AC + SL +G ++HG + LGF VC L+
Sbjct: 239 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 298
Query: 57 FLDLYHLWSRTEWS---------------AFGS----------FDGLLSNEENEYGTALD 91
+ H++S +G DGL + +
Sbjct: 299 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 358
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVTL 136
CS D +G+ +H + KLG + + L++L A C NV L
Sbjct: 359 CSADGTLF-RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 417
Query: 137 RNAMISGYA-----KNGYA-------EEAVK---LFPKWM-------DYYIG-------- 166
N M+ Y +N + EE V +P + D +G
Sbjct: 418 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 477
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
K+ ++ N V +VLIDMYAK G +D A R KDVV + MI GY + + A
Sbjct: 478 KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALT 537
Query: 225 SFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
+F +L +E G A+ L+ L++G+ +H G + + L++L +
Sbjct: 538 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS 597
Query: 278 VCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLF----------------- 308
C L WNA++SG+ ++G EEA+++F
Sbjct: 598 RCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGS 657
Query: 309 -------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + I K+ Y + V LI MYAKCGS+ A F K+
Sbjct: 658 AVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKN 717
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHI--------------------------------- 382
V +A+ Y HG G E F +
Sbjct: 718 EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 777
Query: 383 ---RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
++G+ P+ +HY VVD+L RAG + A +FI MPI+ V R LLSA
Sbjct: 778 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 830
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 113/459 (24%), Positives = 171/459 (37%), Gaps = 93/459 (20%)
Query: 6 VAPNGCTPPLVLKACVALP-SLLMGPRVHGQIFSLGFLV--CYLFDGLFDRTIVFLDLYH 62
+ PN T +L+ C+ SL G ++H QI LG C L + LFD + DLY
Sbjct: 40 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGC-LSEKLFDFYLFKGDLY- 97
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
AF FD E E+ MIK EL S LI
Sbjct: 98 -------GAFKVFD--------------------EMPERTIFTWNKMIK---ELASRNLI 127
Query: 123 SLTA---VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
V NVT SG + + + I R++ +V
Sbjct: 128 GEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNP 187
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGL-LSNE 233
LID+Y++ G VDLA FD KD AMI G +E A F L +
Sbjct: 188 LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT 247
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------ 281
+ + L +E LE G+ +HG ++KLG SD + V Y
Sbjct: 248 PYAFSSVLSACKKIESLEIGEQLHGLVLKLG--FSSDTYVCNALVSLYFHLGNLISAEHI 305
Query: 282 -----QPNVTLWNAMISGYAKNGYAEEAVKLFPK-------------------------- 310
Q + +N +I+G ++ GY E+A++LF +
Sbjct: 306 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 365
Query: 311 ----WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ Y K + +N + L+++YAKC ++ A +F T ++VV+ + M V Y
Sbjct: 366 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 425
Query: 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
GL + +F ++ I P Y ++ R G
Sbjct: 426 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 464
>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15130
gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 117/473 (24%), Positives = 190/473 (40%), Gaps = 138/473 (29%)
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGY 144
+QG VH +++K G L S+ LI + CR + NV +A++SG+
Sbjct: 23 DQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGH 82
Query: 145 AKNGYAEEAVKLFPKWMDYYIGKSEYRNN------------------------------V 174
NG + ++ LF + I +E+ + V
Sbjct: 83 VLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMV 142
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG-----YGLHEWSAFGSF-DG 228
V L+DMY+KCG ++ A F R +D+ ++ +AMI G YG FG +
Sbjct: 143 EVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202
Query: 229 LLSNEENEYG-TALDCSCDLE-FLEQGKIVHGFMIKLGLELESDL-----LISLTAVCRY 281
+ +E+ T+L +C + GK +HGF+++ G S L+ L C Y
Sbjct: 203 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 262
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------- 310
+ + W+++I GYA+ G EA+ LF +
Sbjct: 263 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGV 322
Query: 311 WMDYYIGKSEYR------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+ D+ + + + ++N+V +DMY KCG VD A F KDV+
Sbjct: 323 FADFALLRQGKQMQALAVKLPSGLETSVLNSV-VDMYLKCGLVDEAEKCFAEMQLKDVIS 381
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKH--------------------------------- 385
+ + GYG HGLG++ +F+ + +H
Sbjct: 382 WTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLL 441
Query: 386 ---GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GI+PR +HYA VVDLL RAG A I MPI+ + + + LLS ++
Sbjct: 442 ETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 494
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 122/478 (25%), Positives = 195/478 (40%), Gaps = 137/478 (28%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTL 136
C+ + + L G +H +K GLE E ++ L+S+ A CR + ++
Sbjct: 252 CAAEADLL-SGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVT 310
Query: 137 RNAMISGYAKNGYAEEAVKLF-------------------PKWMDY-----------YIG 166
N MISG +NG +EA+ LF P D YI
Sbjct: 311 WNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYII 370
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
++ + + + L+D+Y KC V A +D DVV+ S +I GY L+ S A
Sbjct: 371 RNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQ 430
Query: 225 SFDGLLSN--EENEYGTA--LDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLT 276
F LL + N A L + L G+ +HG++++ E +ES L+ +
Sbjct: 431 MFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALM-DMY 489
Query: 277 AVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW------------ 311
A C + VT WN+MIS +++NG +EA+ LF +
Sbjct: 490 AKCGRLDLSHYIFSKMSLKDEVT-WNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTI 548
Query: 312 -----------MDYY-------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
YY I K + ++ + LIDMYAKCG+++LA F+ D
Sbjct: 549 SSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPD 608
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--------------------------- 386
K+ V +++ YG HGL +E H +++ G
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQL 668
Query: 387 ---------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I PR +H+A +VDL +R+G + A +FI +MP + + ALL A ++
Sbjct: 669 FQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRV 726
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 119/283 (42%), Gaps = 53/283 (18%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGL 229
++V V + LI MY+ G + A FD +D V+ + M+ GY A F +
Sbjct: 174 SDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNM 233
Query: 230 -LSNEENEYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY 281
+S E + T C+ + + L G +H +K GLE E ++ L+S+ A CR
Sbjct: 234 RVSGCEPNFATLACFLSVCAAEADLL-SGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRC 292
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLF-------------------PK 310
+ ++ WN MISG +NG +EA+ LF P
Sbjct: 293 LDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPA 352
Query: 311 WMDY-----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
D YI ++ + + + L+D+Y KC V A +D DVV+
Sbjct: 353 LTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIG 412
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
S + GY L+G+ E+ +F ++ + I+P A V+ A
Sbjct: 413 STVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACA 455
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 135/344 (39%), Gaps = 79/344 (22%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-VCYLFDGLFDRTIVFLDLYHLW 64
+ PN T VL AC ++ +L +G +HG + + CY+ L +D+Y
Sbjct: 440 IKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESAL-------MDMYAKC 492
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
R + S + F + +E + + + F + G+ + + +E
Sbjct: 493 GRLDLSHY-IFSKMSLKDEVTWNSMIS-----SFSQNGEPQEALDLFRQMCMEG------ 540
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
+Y NVT+ +A+ + A + K + I K + ++ + LIDMY
Sbjct: 541 ---IKYN-NVTISSAL------SACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMY 590
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCS 244
AKCG+++LA F+ DK+ V +++I YG H GL+
Sbjct: 591 AKCGNMELALRVFEFMPDKNEVSWNSIISAYGAH---------GLVKES----------- 630
Query: 245 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304
+ FL + M + G Y+P+ + A+IS A G EE
Sbjct: 631 --VSFLHR-------MQEEG----------------YKPDHVTFLALISACAHAGLVEEG 665
Query: 305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
++LF Y+ + ++D+Y++ G +D A F
Sbjct: 666 LQLFQCMTKEYLIAPRMEH----FACMVDLYSRSGRLDKAIQFI 705
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 134/587 (22%), Positives = 213/587 (36%), Gaps = 170/587 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------CYLFDGL 50
+ V P+ T P ++KAC + +G VHG +G ++ Y G
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260
Query: 51 FDRTIVFLDLYHLWSRTEWS-----------------AFGSF----DGLLSNEENEYGTA 89
D + D + W+ AF S DGL+ +
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNV 134
CS + ++ G ++HG +KLGL E + LI + + C +V
Sbjct: 321 PVCSGEGN-VDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV 379
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPK-WMDY------------------------------ 163
N+MI Y++ G+ E L K WM+
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALH 439
Query: 164 -YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
Y + ++ ++N I YAKCGS+ A F K V +A+I G+
Sbjct: 440 GYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA-QNGDP 498
Query: 223 FGSFD--------GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
+ D G+L ++ + L C L L+ GK +HGF+++ GLE+ S + +S
Sbjct: 499 IKALDFYFEMTRLGILPDDFSIVSLLLACG-RLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557
Query: 275 LTAV---CRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------ 313
L ++ C N WNAM+SGY++N EA+ LF + +
Sbjct: 558 LLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPD 617
Query: 314 ------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ K+ + V L+DMYAK G + + F+
Sbjct: 618 EIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFN 677
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------- 384
R K+V + M G+G+HG G + LF +++
Sbjct: 678 RLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSE 737
Query: 385 -----------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+ +EP +HYA V+D+L RAG N A FI MP E
Sbjct: 738 GLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEE 784
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 83/321 (25%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGS 225
S++ + ++NT LI MY+ CG + + FDR L+K++ +A++ GY +E A +
Sbjct: 137 SQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHT 196
Query: 226 FDGLLSNEENEYGT--------ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
F L+S E + A CD+ GK VHG +K+GL ++ + +I+
Sbjct: 197 FLELISVTEFQPDNFTFPCLIKACTGKCDIHL---GKSVHGMAVKMGLIMDLFVGNAMIA 253
Query: 275 LTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG----- 317
L C + + N+ WN++I G+++NG+ EA + F ++ G
Sbjct: 254 LYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDV 313
Query: 318 ---------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
K + ++V LIDMY+KCG + A + F +
Sbjct: 314 ATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRK 373
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVL--FHHIRKHGIE---------------PRHQH 393
+K VV ++M Y EG+V F +RK +E P
Sbjct: 374 IENKSVVSWNSMIGAY-----SREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLE 428
Query: 394 YARVVDLLARAGYS-NHAFKF 413
+ ++ L A GYS H+F++
Sbjct: 429 ESELLSLRALHGYSLRHSFQY 449
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 91/415 (21%), Positives = 159/415 (38%), Gaps = 103/415 (24%)
Query: 121 LISLTAVCRY------------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------- 161
LI++ ++C Y N+ NA++SGY +N +EA+ F + +
Sbjct: 149 LITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQP 208
Query: 162 ----------------DYYIGKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFF 197
D ++GKS + V V +I +Y KCG +D A F
Sbjct: 209 DNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELF 268
Query: 198 DRTLDKDVVMRSAMIVGYG-----LHEWSAFGSF----DGLLSNEENEYGTALDCSCDLE 248
D+ +++++ +++I G+ L + AF S DGL+ + CS +
Sbjct: 269 DKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGN 328
Query: 249 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLWNAMIS 293
++ G ++HG +KLGL E + LI + + C +V WN+MI
Sbjct: 329 -VDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIG 387
Query: 294 GYAKNGYAEEAVKLFPK-WMDY-------------------------------YIGKSEY 321
Y++ G+ E L K WM+ Y + +
Sbjct: 388 AYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSF 447
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ ++N I YAKCGS+ A F K V +A+ G+ +G + +
Sbjct: 448 QYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFE 507
Query: 382 IRKHGIEPRHQHYARVVDLLARAG---YSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ + GI P ++ R G Y F++ +E+ V +LLS +
Sbjct: 508 MTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY 562
>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
Length = 924
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 106/448 (23%), Positives = 174/448 (38%), Gaps = 147/448 (32%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG-------------------------- 166
N+ NAMI+GY++ A+ LF K +G
Sbjct: 347 NLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLH 406
Query: 167 ----KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
KS + N+ V IDMY KC ++D A FD KD V +A+I + +E +
Sbjct: 407 GLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERS 466
Query: 223 FGSFDGLLS-------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---L 272
+ + L+S +E +G+ L +C + L G +H ++KLG+ + L
Sbjct: 467 -KTLNILVSMLRSGMEPDEYTFGSVLK-ACAGDSLNHGMEIHTTIVKLGMASNPYIGSSL 524
Query: 273 ISLTAVC---------------------------------------RYQPNVTLWNAMIS 293
+ + + C R Q + WNA+IS
Sbjct: 525 VDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIIS 584
Query: 294 GYAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYRN 323
GY +E+A + F + M+ ++ K E +
Sbjct: 585 GYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQY 644
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF---- 379
+V + + L+DMY+KCG++ + + F++ +D V +AM GY HG+GEE LF
Sbjct: 645 DVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESMV 704
Query: 380 -------------------------------HHIRK-HGIEPRHQHYARVVDLLARAGYS 407
H ++K +G++PR +HY+ +VD+L ++G
Sbjct: 705 LMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEV 764
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
A + I MP E + R LLSA KI
Sbjct: 765 EKALELIQEMPFEADDVIWRTLLSACKI 792
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 95/465 (20%), Positives = 169/465 (36%), Gaps = 105/465 (22%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
++LK C L + +G ++HG +G+ D LD+Y R + S F
Sbjct: 186 VILKVCSILENYKLGTQIHGIALRMGY------DTDVVSGSALLDMYAKCKRLDES-FTV 238
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 134
F + + + FL+ G + M K+G+ + + S+ C P++
Sbjct: 239 FYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDL 298
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
L G + +A KS++ + IV T +DMYAKC ++ A
Sbjct: 299 RL------GTQLHAHAL---------------KSDFVKDGIVRTATLDMYAKCNNMQDAQ 337
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL----LSNEENEYGTALDCSCDLE 248
FD + + ++ +AMI GY + + A F L L +E AL ++
Sbjct: 338 RLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVK 397
Query: 249 FLEQGKIVHGFMIKLGLELE---SDLLI-------SLTAVCRY-----QPNVTLWNAMIS 293
L +G +HG K ++ I +L CR + + WNA+I+
Sbjct: 398 GLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIA 457
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYR-----------------------------NN 324
+ +N + + + + + EY +N
Sbjct: 458 AHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSLNHGMEIHTTIVKLGMASN 517
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFF---------------------------DRTLDKDVV 357
+ + L+DMY+KCG +D A DR + + +V
Sbjct: 518 PYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIV 577
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+A+ GY + E+ F+ + + GI P Y+ V+D A
Sbjct: 578 SWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCA 622
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 111/304 (36%), Gaps = 86/304 (28%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--------- 218
S +R V V+ L+ +Y CG++ A FD +DVV +AMI GY
Sbjct: 78 SGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLC 137
Query: 219 ----------EWSAFGSFDGLLSNEEN--------------------EYGTALDCSCDLE 248
W++ G L EN + L LE
Sbjct: 138 FEMMPTRDVVSWNSM--LSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILE 195
Query: 249 FLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLWNAMIS 293
+ G +HG +++G + + L+ + A C+ Q N W+A+I+
Sbjct: 196 NYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIA 255
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIG------------------------------KSEYRN 323
G +N + + +K+F + +G KS++
Sbjct: 256 GCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVK 315
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ IV T +DMYAKC ++ A FD + + ++ +AM GY G +LF +
Sbjct: 316 DGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLS 375
Query: 384 KHGI 387
K +
Sbjct: 376 KSSL 379
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 143/354 (40%), Gaps = 89/354 (25%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LHEWSAFG 224
K+ Y V L+DMYAKCG ++ A F+ DV++ S +I Y AF
Sbjct: 277 KTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFE 336
Query: 225 SF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLT 276
F ++ NE + G C+ ++ FLE G+ +H IKLG E E + L+ +
Sbjct: 337 MFLRMMRSFVVPNEFSLSGVLQACA-NIAFLELGEQIHNLAIKLGYESELFVGNALMDMY 395
Query: 277 AVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY--------- 315
A CR N WN +I GY ++G+AE+A+ +F + +
Sbjct: 396 AKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFS 455
Query: 316 ---------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
I KS + N+ IV LID YAKCG + A F+ ++
Sbjct: 456 SVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVEC 515
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------------ 384
DVV +++ Y LHG LF + K
Sbjct: 516 DVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLF 575
Query: 385 ------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
H I+P +HY +V LL RAG A KFI ++P V RALLS+
Sbjct: 576 NSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSS 629
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 140/355 (39%), Gaps = 81/355 (22%)
Query: 140 MISGYAKNGYAEEAVKLFPKW------MDYYI------------------------GKSE 169
++ GYA G EEA++LF + +++++ K
Sbjct: 119 LMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLG 178
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFD 227
+ N V T LID Y+ CG+V A FD + KD V +AM+ Y ++ A +F
Sbjct: 179 HDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFS 238
Query: 228 GLLSN--EENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR 280
+ + N + +AL + L GK +HG +K + E + L+ + A C
Sbjct: 239 KMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCG 298
Query: 281 ------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-------- 320
+V LW+ +IS YA++ E+A ++F + M ++ +E
Sbjct: 299 DIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQ 358
Query: 321 ----------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
Y + + V L+DMYAKC +++ + F D + V
Sbjct: 359 ACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVS 418
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
+ + VGY G E+ +FH +R + ++ V+ A HA +
Sbjct: 419 WNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQI 473
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 121/292 (41%), Gaps = 75/292 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHG-QIFSL---------GFLVCYLFDG- 49
M++ PN LKA V L S L+G +HG + +L L Y G
Sbjct: 240 MRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGD 299
Query: 50 LFDRTIVFLDLYH----LWS----RTEWS-----AFGSF-----DGLLSNEENEYGTALD 91
+ D +F + H LWS R S AF F ++ NE + G
Sbjct: 300 IEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQA 359
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNV-----TLR------ 137
C+ ++ FLE G+ +H IKLG E E + L+ + A CR N +L+
Sbjct: 360 CA-NIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVS 418
Query: 138 -NAMISGYAKNGYAEEAVKLFPKWMDYY------------------------------IG 166
N +I GY ++G+AE+A+ +F + + I
Sbjct: 419 WNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIE 478
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
KS + N+ IV LID YAKCG + A F+ ++ DVV +++I Y LH
Sbjct: 479 KSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALH 530
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 124/339 (36%), Gaps = 67/339 (19%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS------ 231
VL++ YAK G + A FD +++ V ++ GY L G F+ L
Sbjct: 86 NVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALR-----GEFEEALELFRRLQ 140
Query: 232 ---NEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-------AVC 279
+E N + T L ++ +H KLG + + + +L AVC
Sbjct: 141 REGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVC 200
Query: 280 RYQ--------PNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------- 312
+ + W AM+S Y++N E A+ F K
Sbjct: 201 HARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAV 260
Query: 313 ---DYYIGK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
+GK + Y V L+DMYAKCG ++ A F+ DV++ S
Sbjct: 261 CLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSF 320
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
+ Y E+ + +F + + + P + V+ A + + I N+ I+L
Sbjct: 321 LISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQ-IHNLAIKL 379
Query: 422 ----RLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKT 456
L V AL+ + + EN L+ + + +
Sbjct: 380 GYESELFVGNALMDMYA-KCRNMENSLEIFSSLQDANEV 417
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 155/363 (42%), Gaps = 98/363 (26%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFD 227
+ ++ V++ LIDMY+KCG + A FD ++VV ++MI GY +E + A F
Sbjct: 1173 FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFK 1232
Query: 228 GLLSNE---ENEYGTALDCSCDLEFLE-----QGKI----VHGFMIKLGLELE---SDLL 272
L E E+ LD + L GK VHGF++K G + + L
Sbjct: 1233 DFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTL 1292
Query: 273 ISLTAVCRYQPNVTL-------------WNAMISGYAKNGYAEEAVKLFP---------- 309
+ A C QP V+ WN+MI+ YA++G + EA+++F
Sbjct: 1293 MDAYAKCG-QPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 1351
Query: 310 ---------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
K + + K + NV V T +IDMY KCG V++A F
Sbjct: 1352 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 1411
Query: 349 DRTLDKDVVMRSAMTVGYGLHG-----------------------------------LGE 373
DR +K+V +AM GYG+HG L E
Sbjct: 1412 DRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVE 1471
Query: 374 EGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
EGW F+ ++ K+ IEP +HY +VDL RAG N A+ I M ++ V +LL A
Sbjct: 1472 EGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 1531
Query: 433 WKI 435
+I
Sbjct: 1532 CRI 1534
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 112/296 (37%), Gaps = 88/296 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFD-----GLFDRTIVF 57
P + P +K+C AL L+ G H Q F GF + L D G
Sbjct: 1140 PTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARAL 1199
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNE-------------------ENEYGTALDCSCDLEF 98
D L + W++ G + NE E+ LD +
Sbjct: 1200 FDEIPLRNVVSWTSM--ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSV 1257
Query: 99 LE-----QGKI----VHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR--------- 137
L GK VHGF++K G + + L+ A C QP V+ +
Sbjct: 1258 LSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG-QPLVSKKVFDWMEEKD 1316
Query: 138 ----NAMISGYAKNGYAEEAVKLFP-------------------------------KWMD 162
N+MI+ YA++G + EA+++F K +
Sbjct: 1317 DISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIH 1376
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ K + NV V T +IDMY KCG V++A FDR +K+V +AM+ GYG+H
Sbjct: 1377 DQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 1432
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 85/337 (25%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
++ GK+VHG +IK G + +V ++N +I Y K G+ A+K+F
Sbjct: 141 IDLGKVVHGSLIKYG----------------FSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K NV+ T +I CG + A FD K+VV +AMI GY +
Sbjct: 185 KMR---------VRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRN 235
Query: 219 EW--SAFGSFDGLLSNE--ENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL- 271
+ A F + + NEY + + ++ L G+ +H + IK +E+ L
Sbjct: 236 QQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG 295
Query: 272 --LISLTAVC----------RYQPNVTL--WNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
LI + + C P +L WN+MI+ +G +EA+ LF +
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM------ 349
Query: 318 KSEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
R NV + + I + C + K+V +EG
Sbjct: 350 ---ERVNVKPDAITFIGVLCACVHI------------KNV----------------KEGC 378
Query: 377 VLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFK 412
F + +H GI P +HY + +L AR+ + AFK
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 33/232 (14%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR-----TLDKDVVMRSAMIVGYGLHE 219
I +S N+ ++ LI +Y+ G + A + F + T ++++R+ I G
Sbjct: 50 IIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQA 109
Query: 220 WSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
+ + G+ +++ + + + ++ GK+VHG +IK G
Sbjct: 110 LMLYKNMVCQGIAADKFT-FPFVIKACTNFLSIDLGKVVHGSLIKYG------------- 155
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+ +V + N +I Y K G+ A+K+F K NV+ T +I
Sbjct: 156 ---FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR---------VRNVVSWTTVISGLIS 203
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
CG + A FD K+VV +AM GY + EE LF ++ I P
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFP 255
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 134/587 (22%), Positives = 213/587 (36%), Gaps = 170/587 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------CYLFDGL 50
+ V P+ T P ++KAC + +G VHG +G ++ Y G
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260
Query: 51 FDRTIVFLDLYHLWSRTEWS-----------------AFGSF----DGLLSNEENEYGTA 89
D + D + W+ AF S DGL+ +
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNV 134
CS + ++ G ++HG +KLGL E + LI + + C +V
Sbjct: 321 PVCSGEGN-VDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV 379
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPK-WMDY------------------------------ 163
N+MI Y++ G+ E L K WM+
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALH 439
Query: 164 -YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
Y + ++ ++N I YAKCGS+ A F K V +A+I G+
Sbjct: 440 GYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA-QNGDP 498
Query: 223 FGSFD--------GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
+ D G+L ++ + L C L L+ GK +HGF+++ GLE+ S + +S
Sbjct: 499 IKALDFYFEMTRLGILPDDFSIVSLLLACG-RLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557
Query: 275 LTAV---CRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------ 313
L ++ C N WNAM+SGY++N EA+ LF + +
Sbjct: 558 LLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPD 617
Query: 314 ------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ K+ + V L+DMYAK G + + F+
Sbjct: 618 EIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFN 677
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------- 384
R K+V + M G+G+HG G + LF +++
Sbjct: 678 RLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSE 737
Query: 385 -----------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+ +EP +HYA V+D+L RAG N A FI MP E
Sbjct: 738 GLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEE 784
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 83/321 (25%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGS 225
S++ + ++NT LI MY+ CG + + FDR L+K++ +A++ GY +E A +
Sbjct: 137 SQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHT 196
Query: 226 FDGLLSNEENEYGT--------ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
F L+S E + A CD+ GK VHG +K+GL ++ + +I+
Sbjct: 197 FLELISVTEFQPDNFTFPCLIKACTGKCDIHL---GKSVHGMAVKMGLIMDLFVGNAMIA 253
Query: 275 LTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG----- 317
L C + + N+ WN++I G+++NG+ EA + F ++ G
Sbjct: 254 LYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDV 313
Query: 318 ---------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
K + ++V LIDMY+KCG + A + F +
Sbjct: 314 ATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRK 373
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVL--FHHIRKHGIE---------------PRHQH 393
+K VV ++M Y EG+V F +RK +E P
Sbjct: 374 IENKSVVSWNSMIGAY-----SREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLE 428
Query: 394 YARVVDLLARAGYS-NHAFKF 413
+ ++ L A GYS H+F++
Sbjct: 429 ESELLSLRALHGYSLRHSFQY 449
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 91/415 (21%), Positives = 159/415 (38%), Gaps = 103/415 (24%)
Query: 121 LISLTAVCRY------------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------- 161
LI++ ++C Y N+ NA++SGY +N +EA+ F + +
Sbjct: 149 LITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQP 208
Query: 162 ----------------DYYIGKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFF 197
D ++GKS + V V +I +Y KCG +D A F
Sbjct: 209 DNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELF 268
Query: 198 DRTLDKDVVMRSAMIVGYG-----LHEWSAFGSF----DGLLSNEENEYGTALDCSCDLE 248
D+ +++++ +++I G+ L + AF S DGL+ + CS +
Sbjct: 269 DKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGN 328
Query: 249 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLWNAMIS 293
++ G ++HG +KLGL E + LI + + C +V WN+MI
Sbjct: 329 -VDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIG 387
Query: 294 GYAKNGYAEEAVKLFPK-WMDY-------------------------------YIGKSEY 321
Y++ G+ E L K WM+ Y + +
Sbjct: 388 AYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSF 447
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ ++N I YAKCGS+ A F K V +A+ G+ +G + +
Sbjct: 448 QYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFE 507
Query: 382 IRKHGIEPRHQHYARVVDLLARAG---YSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ + GI P ++ R G Y F++ +E+ V +LLS +
Sbjct: 508 MTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY 562
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 170/460 (36%), Gaps = 165/460 (35%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS------------LTAVCRY-----QP 132
+ + ++ L G+ +HG +K + SD+ ++ L + C+ +
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVG--SDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMD------------------------------ 162
+V N+MI+G+ + G ++A++LF K
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
YI ++ N+ + ++DMY KCGS++ A FD +KD V + M+ GY
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA------ 309
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
I E ++L S+ Q
Sbjct: 310 --------------------------------------ISEDYEAAREVLNSMP-----Q 326
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFP-------------------------------KW 311
++ WNA+IS Y +NG EA+ +F +W
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ YI K R N V + LI MY+KCG ++ + F+ +DV + SAM G +HG
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 372 G-----------------------------------EEGWVLFHHIR-KHGIEPRHQHYA 395
G +E LFH + +GI P +HYA
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VD+L R+GY A KFI MPI SV ALL A KI
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKI 546
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 153/353 (43%), Gaps = 91/353 (25%)
Query: 140 MISGYAKNGYAEEAVKLFP---------------------------KW---MDYYIGKSE 169
MI GYA+ GYAE+A+K++ KW + +I +S
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YGLHEWSAFGSF 226
++++V V T L++MY KCGS+D A + FD+ ++++V+ + MI G YG + AF F
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQ-EAFHRF 119
Query: 227 -----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
+G + N Y + L+ + LE K VH + GL L DL + V Y
Sbjct: 120 LQMQREGFIPNSYT-YVSILNANASAGALEWVKEVHSHAVNAGLAL--DLRVGNALVHMY 176
Query: 282 QPNVTL-----------------WNAMISGYAKNGYAEEAVKLF---------PKWMDY- 314
+ ++ W MI G A++G +EA LF P Y
Sbjct: 177 AKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYL 236
Query: 315 ----------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ GK+ + +++ V LI MYAKCGS+D A + FD
Sbjct: 237 SILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC 296
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
D+DV+ +AM G +G G E + +F +++ G P Y +++ G
Sbjct: 297 DRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTG 349
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 157/412 (38%), Gaps = 118/412 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW---------------MDYYIGKSEYR----------- 171
NAMI G A+NG EA +F K ++ ++ +
Sbjct: 304 NAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE 363
Query: 172 ----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEWSA 222
+++ V + + MY +CGS+D A + FD+ ++V +AMI G G S
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSL 423
Query: 223 FGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL-ELE-SDLLISLTAV 278
F +G + + L + E LE K VH + I GL +L + L+ + A
Sbjct: 424 FLQMRREGFFP-DATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAK 482
Query: 279 C------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY-- 315
C + NVT W MISG A++G EA LF P Y
Sbjct: 483 CGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSI 542
Query: 316 ------IGKSEYRNNV-------------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
G E+ V V L+ MYAKCGSVD A FD L++DV
Sbjct: 543 LSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDV 602
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIR--------------------------------- 383
+ M G HG G + LF ++
Sbjct: 603 YSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLS 662
Query: 384 ---KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+GIEP +HY +VDLL RAG A FI+NMPIE + ALL A
Sbjct: 663 LTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGA 714
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 33/173 (19%)
Query: 291 MISGYAKNGYAEEAVKLFP---------------------------KW---MDYYIGKSE 320
MI GYA+ GYAE+A+K++ KW + +I +S
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
++++V V T L++MY KCGS+D A + FD+ ++++V+ + M G +G G+E + F
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120
Query: 381 HIRKHGIEPRHQHYARVVDLLARAG---YSNHAFKFIMNMPIELRLSVRRALL 430
+++ G P Y +++ A AG + +N + L L V AL+
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALV 173
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 164/418 (39%), Gaps = 144/418 (34%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------- 166
N+MISGY NG E + ++ + M Y+G
Sbjct: 82 NSMISGYVSNGLTERGLGIYKQMM--YLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLA 139
Query: 167 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
KS + + + L+DMY+KCG +D A F++ +++VV ++MI GY WS
Sbjct: 140 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWS---- 195
Query: 226 FDG---LLSNEENEYGTALDC--------SCDLE-FLEQGKIVHGFMIKLGLELESDLLI 273
DG LL E E G LD +C L+ GK VH + ++++ +
Sbjct: 196 -DGAIILLQQMEKE-GVKLDVVAITSILHACARSGSLDNGKDVHDY-------IKANNMA 246
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------ 309
S VC NA++ YAK G E A +F
Sbjct: 247 SNLFVC---------NALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTM 297
Query: 310 ----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
K + YI ++ Y ++ V L+D+Y KCG + LA + FD
Sbjct: 298 ACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPS 357
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------------ 389
KD+V + M GYG+HG G E F+ +R GIEP
Sbjct: 358 KDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRF 417
Query: 390 ------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +HYA +VDLL+R G + A+KFI +PI ++ ALL +I
Sbjct: 418 FYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRI 475
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 67/260 (25%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239
L+ YA CG + FD K+V + + M+ E++ G F
Sbjct: 2 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMV-----SEYAKIGDF------------- 43
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS--LTAVCRYQPNVTLWNAMISGYAK 297
++ + M++ G+E + S +C +V WN+MISGY
Sbjct: 44 -----------KESICLFKIMVEKGIEGKRSESASELFDKLC--DRDVISWNSMISGYVS 90
Query: 298 NGYAEEAVKLFPKWMDYYIG--------------------------------KSEYRNNV 325
NG E + ++ + M Y+G KS + +
Sbjct: 91 NGLTERGLGIYKQMM--YLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRI 148
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
+ L+DMY+KCG +D A F++ +++VV ++M GY G + +L + K
Sbjct: 149 NFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKE 208
Query: 386 GIEPRHQHYARVVDLLARAG 405
G++ ++ AR+G
Sbjct: 209 GVKLDVVAITSILHACARSG 228
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 83/289 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ NV L N M+S YAK G +E++ LF ++++ +
Sbjct: 24 KKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIEGKRS 63
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDL 247
+ A FD+ D+DV+ ++MI GY GL E G + ++ G +D + +
Sbjct: 64 ESASELFDKLCDRDVISWNSMISGYVSNGLTE-RGLGIYKQMMY-----LGIDVDLATII 117
Query: 248 EF---------LEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQP 283
L GK VH IK E S+ L+ + + C +
Sbjct: 118 SVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 177
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
NV W +MI+GY ++G+++ A+ L K +
Sbjct: 178 NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH 237
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
YI + +N+ V L+DMYAKCGS++ A F + KD++ + M
Sbjct: 238 DYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM 286
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 152/359 (42%), Gaps = 90/359 (25%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS 221
I K + N+ V T L+DMYAKC + A FD+ ++++V ++MIVG+ L++
Sbjct: 271 IHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYD-R 329
Query: 222 AFGSFDGLLSNE-----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
A G F +L + E + L ++ L G+ VHG ++K GL + ++ SL
Sbjct: 330 AVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLM 389
Query: 277 AV---CRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWM 312
+ CR+ +V WN ++ G+ +N EEA F P
Sbjct: 390 DMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEA 449
Query: 313 DY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ I K Y N+ + LI MYAKCGS+ A F+
Sbjct: 450 SFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI 509
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------- 391
D +V+ +AM Y LHG + LF H+ GIEP H
Sbjct: 510 EDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGL 569
Query: 392 ----------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HYA +VDLL RAG+ + A +FI +MP++ SV ALL A +
Sbjct: 570 AHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACR 628
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 85/229 (37%), Gaps = 55/229 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVCYLFD--- 48
V PN + VL AC + L G +VHG + G + C FD
Sbjct: 343 VIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGV 402
Query: 49 GLF----DRTIV--------FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDL 96
LF DR +V F+ + +G+L +E + + T L S L
Sbjct: 403 KLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEAS-FSTVLHSSASL 461
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL 156
L QG +H +IKLG Y N+ + ++I+ YAK G +A ++
Sbjct: 462 AALHQGTAIHDQIIKLG----------------YVKNMCILGSLITMYAKCGSLVDAYQV 505
Query: 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
F D+ NVI T +I Y G + F+ L + +
Sbjct: 506 FEGIEDH---------NVISWTAMISAYQLHGCANQVIELFEHMLSEGI 545
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 155/363 (42%), Gaps = 98/363 (26%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFD 227
+ ++ V++ LIDMY+KCG + A FD ++VV ++MI GY +E + A F
Sbjct: 2046 FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFK 2105
Query: 228 GLLSNE---ENEYGTALDCSCDLEFLE-----QGKI----VHGFMIKLGLELE---SDLL 272
L E E+ LD + L GK VHGF++K G + + L
Sbjct: 2106 DFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTL 2165
Query: 273 ISLTAVCRYQPNVTL-------------WNAMISGYAKNGYAEEAVKLFP---------- 309
+ A C QP V+ WN+MI+ YA++G + EA+++F
Sbjct: 2166 MDAYAKCG-QPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 2224
Query: 310 ---------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
K + + K + NV V T +IDMY KCG V++A F
Sbjct: 2225 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 2284
Query: 349 DRTLDKDVVMRSAMTVGYGLHG-----------------------------------LGE 373
DR +K+V +AM GYG+HG L E
Sbjct: 2285 DRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVE 2344
Query: 374 EGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
EGW F+ ++ K+ IEP +HY +VDL RAG N A+ I M ++ V +LL A
Sbjct: 2345 EGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 2404
Query: 433 WKI 435
+I
Sbjct: 2405 CRI 2407
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 112/296 (37%), Gaps = 88/296 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFD-----GLFDRTIVF 57
P + P +K+C AL L+ G H Q F GF + L D G
Sbjct: 2013 PTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARAL 2072
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNE-------------------ENEYGTALDCSCDLEF 98
D L + W++ G + NE E+ LD +
Sbjct: 2073 FDEIPLRNVVSWTSM--ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSV 2130
Query: 99 LE-----QGKI----VHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR--------- 137
L GK VHGF++K G + + L+ A C QP V+ +
Sbjct: 2131 LSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG-QPLVSKKVFDWMEEKD 2189
Query: 138 ----NAMISGYAKNGYAEEAVKLFP-------------------------------KWMD 162
N+MI+ YA++G + EA+++F K +
Sbjct: 2190 DISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIH 2249
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ K + NV V T +IDMY KCG V++A FDR +K+V +AM+ GYG+H
Sbjct: 2250 DQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 2305
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 135/337 (40%), Gaps = 85/337 (25%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
++ GK+VHG +IK G + +V ++N +I Y K G+ A+K+F
Sbjct: 141 IDLGKVVHGSLIKYG----------------FSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K NV+ T +I CG + A FD K+VV +AMI GY +
Sbjct: 185 KMR---------VRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRN 235
Query: 219 EW--SAFGSFDGLLSNE--ENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL- 271
+ A F + + NEY + + ++ L G+ +H + IK +E+ L
Sbjct: 236 QQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG 295
Query: 272 --LISLTAVC----------RYQPNVTL--WNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
LI + + C P +L WN+MI+ +G +EA+ LF +
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM------ 349
Query: 318 KSEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
R NV + + I + C + K+V +EG
Sbjct: 350 ---ERVNVKPDAITFIGVLCACVHI------------KNV----------------KEGC 378
Query: 377 VLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFK 412
F + +H GI P +HY + +L AR+ + AFK
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 33/232 (14%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR-----TLDKDVVMRSAMIVGYGLHE 219
I +S N+ ++ LI +Y+ G + A + F + T ++++R+ I G
Sbjct: 50 IIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQA 109
Query: 220 WSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
+ + G+ +++ + + + ++ GK+VHG +IK G
Sbjct: 110 LMLYKNMVCQGIAADKFT-FPFVIKACTNFLSIDLGKVVHGSLIKYG------------- 155
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+ +V + N +I Y K G+ A+K+F K NV+ T +I
Sbjct: 156 ---FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR---------VRNVVSWTTVISGLIS 203
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
CG + A FD K+VV +AM GY + EE LF ++ I P
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFP 255
>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 510
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 150/358 (41%), Gaps = 94/358 (26%)
Query: 170 YRNNVIVNTVLIDMYAKCG--SVDLAPMFFDRTLDKDVVMRSAMIVGYG--------LHE 219
++ + + LID Y++ G +V+ A FD ++DV + +I GY LH
Sbjct: 48 HKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYANMGPFAEALHV 107
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLT 276
++A G N C + + L +G+I+HG ++K GLE + + ++
Sbjct: 108 YNAM-RLSGAAPNRYTYPFVLKACGAERDCL-KGRIIHGNVVKCGLEFDLFVGNAFVAFY 165
Query: 277 AVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPK-------------- 310
A C+ + ++ WN+M+SGY NGY +EAV LF
Sbjct: 166 AKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAVMLFCDMLRDDGIGFPDNAT 225
Query: 311 ------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
W+ YI K+ + + V LI +Y+ CG + +A FD+
Sbjct: 226 LVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGLITLYSNCGYIRMAKAVFDQIP 285
Query: 353 DKDVVMRSAMTVGYGLHGLG-----------------------------------EEGWV 377
D++V++ SA+ YG+HG EEGW
Sbjct: 286 DRNVIVWSAIIRCYGMHGFAQEALSMFRQLVELGLHLDGIVFLSLLSACSHAGMHEEGWH 345
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LF + +G+ HYA +VDLL RAG A + I +MPI+ +V ALL A +I
Sbjct: 346 LFQTMETYGVVKGEAHYACMVDLLGRAGNLEKAMELIQSMPIQPGKNVYGALLGASRI 403
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 47/168 (27%)
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGYA 145
+G+I+HG ++K GLE + + ++ A C+ + ++ N+M+SGY
Sbjct: 138 KGRIIHGNVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYI 197
Query: 146 KNGYAEEAVKLFPK--------------------------------WMDYYIGKSEYRNN 173
NGY +EAV LF W+ YI K+ + +
Sbjct: 198 ANGYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLD 257
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
V LI +Y+ CG + +A FD+ D++V++ SA+I YG+H ++
Sbjct: 258 PAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFA 305
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 165/403 (40%), Gaps = 96/403 (23%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLRNAMISG 143
L +GK +HG +I G ++SL CR + ++ N +ISG
Sbjct: 158 LRRGKEIHGQLITSGFSWNLFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISG 217
Query: 144 YAKNGYAEEAVKLFPKWMD------------------------------YYIGKSEYRNN 173
YA+NG + A++L PK + Y+ ++ +
Sbjct: 218 YAQNGLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWL 277
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YGLHEWSAF---GSFD 227
V ++T L+DMY+KC S+ A + FD + VV ++MI G G E + D
Sbjct: 278 VNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMD 337
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRYQ-- 282
L + L D LEQGK VH + L L+ + LIS+ + C+
Sbjct: 338 EGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDF 397
Query: 283 --------PNVTL--WNAMISGYAKNGYAEEAVKLF------------------------ 308
N TL WNAMI GYA+NG EA+ F
Sbjct: 398 AANLFENLQNRTLVSWNAMILGYAQNGRLNEALNFFCEMQSQNIKPDSFTMVSVIPALAE 457
Query: 309 ------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
KW+ + + + V V T L+DMYAKCG++ A F+ ++ V+ ++M
Sbjct: 458 LSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARKLFNMMSERHVITWNSM 517
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
YG HGLG+E LF ++K I+P + V+ + +G
Sbjct: 518 IDAYGTHGLGKEAVQLFVEMQKGTIKPNDVTFLCVLSACSHSG 560
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 112/289 (38%), Gaps = 51/289 (17%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG------SF 226
N+ T ++ +Y KC + A FDR ++D+V + +I GY + + F
Sbjct: 176 NLFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISGYAQNGLTKVALELVPKIF 235
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY-- 281
+ + + L D+ L GK +H ++I+ G + S L+ + + C
Sbjct: 236 EEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLG 295
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------- 322
V WN+MI+G +NG EEA LF K MD + ++
Sbjct: 296 TARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHACA 355
Query: 323 ---------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
+NV V LI MY+KC VD A F+ ++ +V +A
Sbjct: 356 DSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWNA 415
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
M +GY +G E F ++ I+P V+ LA A
Sbjct: 416 MILGYAQNGRLNEALNFFCEMQSQNIKPDSFTMVSVIPALAELSIPRQA 464
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 54/323 (16%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
I K+ + + + T LI ++ GS+ A F+ +K + M+ G+ + SA
Sbjct: 67 IIKNGFYSEELFQTKLISLFCNYGSLTEAARVFEPIENKLEALYHTMLKGFAKNSSLDSA 126
Query: 223 FGSFDGLLSNEENEYG---TALDCSCDLEF-LEQGKIVHGFMIKLGLE---LESDLLISL 275
F + + T L C F L +GK +HG +I G ++SL
Sbjct: 127 LLFFCRMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEIHGQLITSGFSWNLFAMTAVVSL 186
Query: 276 TAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---------- 313
CR + ++ WN +ISGYA+NG + A++L PK +
Sbjct: 187 YCKCRVIGDAYKMFDRMTERDLVCWNTIISGYAQNGLTKVALELVPKIFEEGHRPDSVTI 246
Query: 314 --------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
Y+ ++ + V ++T L+DMY+KC S+ A + FD
Sbjct: 247 VSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLGTARVIFDGMGS 306
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG---YSNHA 410
+ VV ++M G +G EE VLF + G++P V+ A +G
Sbjct: 307 RTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFV 366
Query: 411 FKFIMNMPIELRLSVRRALLSAW 433
K + ++ ++ +SV +L+S +
Sbjct: 367 HKLVEDLKLDSNVSVMNSLISMY 389
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 105/290 (36%), Gaps = 85/290 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYH----- 62
P+ T VL A + SL G +H + G FD L + + +D+Y
Sbjct: 241 PDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAG------FDWLVNISTALVDMYSKCDSL 294
Query: 63 ---------LWSRTEWSAFGSFDGLLSNEENEYGT--------------------ALDCS 93
+ SRT + G + N + E L
Sbjct: 295 GTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHAC 354
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRYQ----------PNVTLR--N 138
D LEQGK VH + L L+ + LIS+ + C+ N TL N
Sbjct: 355 ADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWN 414
Query: 139 AMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKS 168
AMI GYA+NG EA+ F KW+ + +
Sbjct: 415 AMILGYAQNGRLNEALNFFCEMQSQNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRR 474
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ V V T L+DMYAKCG++ A F+ ++ V+ ++MI YG H
Sbjct: 475 LLDDTVFVMTALVDMYAKCGAIHTARKLFNMMSERHVITWNSMIDAYGTH 524
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 123/535 (22%), Positives = 198/535 (37%), Gaps = 168/535 (31%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL----VCYLFDGLFDRTIV 56
M+ V+ +G T PLV++AC + S + VHG + +GF V G++ +
Sbjct: 126 MRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGR 185
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
D ++ R + S++ ++S Y DC E M GLE
Sbjct: 186 MDDARKVFERMAVRSCVSWNTMVSG----YALNYDCHGASEMFR-------MMGSAGLE- 233
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------ 158
PN+ +++S +A+ G E ++LF
Sbjct: 234 ---------------PNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVL 278
Query: 159 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
K + Y+ K + N + V LI +Y K G+V+ A + F K++V
Sbjct: 279 SVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIV 338
Query: 207 MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266
+A+I Y W CD F I L LE
Sbjct: 339 SWNALISSYADLGW------------------------CD----------EAFAIFLQLE 364
Query: 267 LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW--------------- 311
+ + +PNV W+A+I G+A G EEA++LF +
Sbjct: 365 KTDEYPM-------VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 417
Query: 312 ---------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+ ++ +S N++V LI+MY K GS + F++ +KD+
Sbjct: 418 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 477
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------------------------ 386
+ + M GYG+HGLGE F + K G
Sbjct: 478 ISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDK 537
Query: 387 ------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+EP+ +HYA +VDLL RAG A K + +MP+E V ALL++ ++
Sbjct: 538 MIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRM 592
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 178/471 (37%), Gaps = 167/471 (35%)
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------- 132
E +G+AL L L G +H + K L+ L+ + + C
Sbjct: 151 EYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFD 210
Query: 133 -----NVTLRNAMISGYAKNGYAEEAVKLFPKWMD------------------------- 162
N+ N++I+ Y +NG A +A+++F MD
Sbjct: 211 GMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIRE 270
Query: 163 ------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
+ + +YRN++++ L+DMYAKC V+ A + FDR ++VV ++M+ GY
Sbjct: 271 GLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYA 330
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
+K + S+++
Sbjct: 331 ----------------------------------------RAASVKAARLMFSNMM---- 346
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------PKWMDYY--------------- 315
+ NV WNA+I+GY +NG EEAV+LF W +Y
Sbjct: 347 -----EKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADL 401
Query: 316 -IGKSEY--------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+G+ + +++ V LIDMY KCG V+ + F+R +++DVV +
Sbjct: 402 KLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWN 461
Query: 361 AMTVGYGLHGLG-----------------------------------EEGWVLFHHIRKH 385
AM VGY +G G EEG FH +R
Sbjct: 462 AMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTE 521
Query: 386 -GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G+ P H+ +VDLL RAG + A I MP++ V +LL+A K+
Sbjct: 522 LGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKV 572
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 129/311 (41%), Gaps = 61/311 (19%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
++ + ++N ++ Y K GY E+A K+F + RN N VL + K G
Sbjct: 49 QFSSEIFIQNRLVDAYGKCGYFEDARKVFDRM--------PQRNTFSYNAVL-SVLTKFG 99
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNE----ENEYGTALD 242
+D A F + D +AM+ G+ H+ A F + S + E +G+AL
Sbjct: 100 KLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALS 159
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTL 287
L L G +H + K L+ L+ + + C N+
Sbjct: 160 ACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVS 219
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMD-------------------------------YYI 316
WN++I+ Y +NG A +A+++F MD +
Sbjct: 220 WNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVV 279
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
+ +YRN++++ L+DMYAKC V+ A + FDR ++VV ++M GY +
Sbjct: 280 KRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAAR 339
Query: 377 VLFHHIRKHGI 387
++F ++ + +
Sbjct: 340 LMFSNMMEKNV 350
>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 872
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 194/490 (39%), Gaps = 95/490 (19%)
Query: 52 DRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENE-YGTALDCSC-DLEFLEQ----GKIV 105
+ T +FL++ HL + S F S + + +E +G L C C FL+ +V
Sbjct: 80 EATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLV 139
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD--- 162
+M + ++ + + NV +ISGYA+N EE + LF + D
Sbjct: 140 DTYMKGSNFKDGRNVFDEMK-----ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGT 194
Query: 163 ---------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+ K+ + V+ LI++Y KCG+V A +
Sbjct: 195 QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI 254
Query: 196 FFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSN----EENEYGTALDCSCDLEF 249
FD+T K VV ++MI GY + + A G F + N E+ + + + +L+
Sbjct: 255 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKE 314
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAV----------------CRYQPNVTLWNAMIS 293
L + +H ++K G + ++ +L + NV W AMIS
Sbjct: 315 LRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMIS 374
Query: 294 GYAKNGYAEEAVKLF--------------------------PKWMDYYIGKSEYRNNVIV 327
G+ +N EEAV LF P + + K+ Y + V
Sbjct: 375 GFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV 434
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
T L+D Y K G VD A F +KD+V SAM GY G E +F + K G+
Sbjct: 435 GTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGV 494
Query: 388 EPRHQHYARVVDLLARA----GYSNHAFKFIMNMPIELRLSVRRALLS--AWKIPMQQWE 441
+P ++ ++++ A G F + ++ L V ALL+ A K ++ E
Sbjct: 495 KPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAE 554
Query: 442 NMLQTIRGID 451
+ + R D
Sbjct: 555 EVFKRQREKD 564
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 143/341 (41%), Gaps = 63/341 (18%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLF--------------------------PKWMDYYIG 166
NV AMISG+ +N EEAV LF P + +
Sbjct: 365 NVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVV 424
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFG 224
K+ Y + V T L+D Y K G VD A F +KD+V SAM+ GY +A
Sbjct: 425 KTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIK 484
Query: 225 SFD----GLLSNEENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
F G + E + + L+ C+ + QGK HGF IK L+S L +S
Sbjct: 485 IFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKS--RLDSSLCVS----- 537
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+A+++ YAK G+ E A ++F K + +++ +I YA+ G
Sbjct: 538 ---------SALLTMYAKKGHIESAEEVF---------KRQREKDLVSWNSMISGYAQHG 579
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFH-HIRKHGIEPRHQHY 394
A F + V M S +G GL EEG F +R I P +H
Sbjct: 580 QAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 639
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +VDL +RAG A K I NMP ++ R +L+A ++
Sbjct: 640 SCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRV 680
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/448 (23%), Positives = 173/448 (38%), Gaps = 160/448 (35%)
Query: 99 LEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVTLRNAMISG 143
L +G +HG KLG + + + L+ + A C + +V + MI G
Sbjct: 138 LVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDG 197
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEY--------------------------RNNVIVN 177
Y ++G +A+ LF + +Y + E NN++V+
Sbjct: 198 YCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVD 257
Query: 178 ----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
+ L+ MYA CGS+DLA F++ K++V +AM+ GY S G
Sbjct: 258 PHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGY-----SKLGQ-------- 304
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
+E + V M+K L VC W+AMIS
Sbjct: 305 ----------------IENARSVFNQMVKKDL------------VC--------WSAMIS 328
Query: 294 GYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRN 323
GYA++ +EA+ LF KW+ ++ K+ +
Sbjct: 329 GYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGG 388
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG------------- 370
+ +N LI+MYAKCGS++ A FD+ K+V+ + M + +HG
Sbjct: 389 ALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQME 448
Query: 371 ----------------------LGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYS 407
L EEG +F+ I +H I P+H HY +VDL RA
Sbjct: 449 DENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLL 508
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
A + + MP+ + + +L++A ++
Sbjct: 509 REALELVEAMPLAPNVIIWGSLMAACRV 536
>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
Length = 705
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 152/356 (42%), Gaps = 87/356 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA- 222
KS ++ V+ L+DMY KCG V++A F T KDVV S++IVGY G+H S
Sbjct: 288 KSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVS 347
Query: 223 -FGSFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F L ++ + + L C L+ + GK +H F I+ GLE ++ +L +
Sbjct: 348 LFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYS 407
Query: 281 YQ---------------PNVTLWNAMISGYAKNGYAEEA-------------------VK 306
Q ++ +WN+M++GYA NGY++ A V
Sbjct: 408 KQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVS 467
Query: 307 LFP-----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ P K + Y+ K + VN L+DMY KCG +++A F +++
Sbjct: 468 VLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERN 527
Query: 356 VVMRSAMTVGYGLH-----------------------------------GLGEEGWVLFH 380
V + + +G H GL ++G L+H
Sbjct: 528 TVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYH 587
Query: 381 H-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ + I P +HY+ +VDL +R G + A+ F+ NM E + V LL+A ++
Sbjct: 588 SMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRV 643
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 132/324 (40%), Gaps = 62/324 (19%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
I R NV V L+DM+AKCG +D A F+ +D+ +AMI G +H +
Sbjct: 185 IASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMI-GGTVHSGNWLE 243
Query: 225 SFDGLLSNEENEYG-------TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
D +G T + L+ G +HG +K G + S+ L+
Sbjct: 244 VVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVD 303
Query: 275 LTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------ 316
+ C +V W+++I GY++NG +V LF + + I
Sbjct: 304 MYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSST 363
Query: 317 ----------------GKSEY---------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
GK + R+ +V + LID+Y+K G + +A F T
Sbjct: 364 LASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVV-SALIDLYSKQGLIRVAETIFWLT 422
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR-----AGY 406
LDKD+ + ++M GY ++G + + ++K G++P H V+ L + G
Sbjct: 423 LDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGK 482
Query: 407 SNHAFKFIMNMPIELRLSVRRALL 430
HA +++ I SV ALL
Sbjct: 483 ELHA--YVIKYCINSVCSVNNALL 504
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 152/350 (43%), Gaps = 87/350 (24%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-----WSAFGS-F 226
N+ V ++DMY KCG++ A + F+ +D V +A+I + +E S F S
Sbjct: 374 NICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC---- 279
+ ++ YG+ + + L G +HG +IK G+ L+ L+ + C
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLM 493
Query: 280 -------RYQPNVTL-WNAMISGYAKNGYAEEAVKLFPKWM------DYY---------- 315
R + T+ WN++ISG++ +E A + F + + D Y
Sbjct: 494 EAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCA 553
Query: 316 --------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
I K + ++V + + L+DMY+KCG++ + + F++ +D V SA
Sbjct: 554 NMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSA 613
Query: 362 MTVGYGLHGLGEEGWVLF--------------------------------HHIRK----H 385
M Y HGLGE+ LF H+ +K +
Sbjct: 614 MICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHY 673
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G++P+ +HY+ +VDLL R+G N A K I +MP E + R LLS K+
Sbjct: 674 GLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKM 723
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/469 (19%), Positives = 172/469 (36%), Gaps = 110/469 (23%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFL-VCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
+L+ C L +L G +VH Q+ GF+ Y+ + L L Y S+ + AF
Sbjct: 12 ILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCL-------LQFYCKSSKMNY-AFKV 63
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 134
FD + + + T ++ G+ + L S+ + +V
Sbjct: 64 FDRMPQRDVISWNT---------------LIFGYAGIGNMGFAQSLFDSMP-----ERDV 103
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIG------ 166
N+++S Y NG +++++F + DY +G
Sbjct: 104 VSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCL 163
Query: 167 --KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
+ + N+V+ + L+DMY+KC +D A F ++++V SA+I GY ++
Sbjct: 164 AIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEG 223
Query: 223 FGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISL 275
F +L ++ Y + L + G +HG +K +S + + +
Sbjct: 224 LKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDM 283
Query: 276 TAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR- 322
A C P +NA+I GYA+ +A+ +F +G E
Sbjct: 284 YAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISL 343
Query: 323 -----------------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
N+ V ++DMY KCG++ A + F+
Sbjct: 344 SGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMER 403
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+D V +A+ + + + LF + + +EP Y VV A
Sbjct: 404 RDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 75/276 (27%)
Query: 17 LKACVALPSLLMGPRVHGQIFS--LGFLVCY---LFDGLFDRTIVFLDLYHLWSRTEWSA 71
L AC + L G ++HG LGF +C + D ++ + ++ ++ E
Sbjct: 347 LTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILD-MYGKCGALMEACLIFEEMERRD 405
Query: 72 FGSFDGLLS-NEENE-----------------------YGTALDCSCDLEFLEQGKIVHG 107
S++ +++ +E+NE YG+ + + L G +HG
Sbjct: 406 AVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHG 465
Query: 108 FMIKLGLELE---SDLLISLTAVC-----------RYQPNVTLR-NAMISGYAKNGYAEE 152
+IK G+ L+ L+ + C R + T+ N++ISG++ +E
Sbjct: 466 RIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSEN 525
Query: 153 AVKLFPKWM------DYY------------------------IGKSEYRNNVIVNTVLID 182
A + F + + D Y I K + ++V + + L+D
Sbjct: 526 AQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVD 585
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
MY+KCG++ + + F++ +D V SAMI Y H
Sbjct: 586 MYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYH 621
>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
Length = 700
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 152/356 (42%), Gaps = 87/356 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA- 222
KS ++ V+ L+DMY KCG V++A F T KDVV S++IVGY G+H S
Sbjct: 283 KSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVS 342
Query: 223 -FGSFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F L ++ + + L C L+ + GK +H F I+ GLE ++ +L +
Sbjct: 343 LFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYS 402
Query: 281 YQ---------------PNVTLWNAMISGYAKNGYAEEA-------------------VK 306
Q ++ +WN+M++GYA NGY++ A V
Sbjct: 403 KQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVS 462
Query: 307 LFP-----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ P K + Y+ K + VN L+DMY KCG +++A F +++
Sbjct: 463 VLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTERN 522
Query: 356 VVMRSAMTVGYGLH-----------------------------------GLGEEGWVLFH 380
V + + +G H GL ++G L+H
Sbjct: 523 TVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYH 582
Query: 381 H-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ + I P +HY+ +VDL +R G + A+ F+ NM E + V LL+A ++
Sbjct: 583 SMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRV 638
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 132/324 (40%), Gaps = 62/324 (19%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
I R NV V L+DM+AKCG +D A F+ +D+ +AMI G +H +
Sbjct: 180 IASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMI-GGTVHSGNWLE 238
Query: 225 SFDGLLSNEENEYG-------TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
D +G T + L+ G +HG +K G + S+ L+
Sbjct: 239 VVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVD 298
Query: 275 LTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------ 316
+ C +V W+++I GY++NG +V LF + + I
Sbjct: 299 MYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSST 358
Query: 317 ----------------GKSEY---------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
GK + R+ +V + LID+Y+K G + +A F T
Sbjct: 359 LASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVV-SALIDLYSKQGLIRVAETIFWLT 417
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR-----AGY 406
LDKD+ + ++M GY ++G + + ++K G++P H V+ L + G
Sbjct: 418 LDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGK 477
Query: 407 SNHAFKFIMNMPIELRLSVRRALL 430
HA +++ I SV ALL
Sbjct: 478 ELHA--YVIKYCINSVCSVNNALL 499
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/420 (24%), Positives = 166/420 (39%), Gaps = 117/420 (27%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG---- 166
NV NAM+ G + G EA++LF + Y+ G
Sbjct: 317 NVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVH 376
Query: 167 ----KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-- 220
KS + +V V ++D+Y KC ++ A + F +D V +A+I +E
Sbjct: 377 CLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYE 436
Query: 221 SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES------- 269
+ +L + ++ YG+ L L+ LE G +VHG IK GL L++
Sbjct: 437 DTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVV 496
Query: 270 DLLISLTAVCRYQP--------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------- 314
D+ A+ Q + WN++ISG++ +EEA + F + +D
Sbjct: 497 DMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHF 556
Query: 315 -----------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
I K E + +++ L+DMYAKCG++ + + F++
Sbjct: 557 TYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKA 616
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------- 391
D V +AM GY LHG G E +F +++ + P H
Sbjct: 617 RKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGC 676
Query: 392 ----------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+H+A +VD+L R+ A +FI +MPIE V + LLS KI
Sbjct: 677 QYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKI 736
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 120/315 (38%), Gaps = 66/315 (20%)
Query: 127 VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
V + P + N ++ YA+ G A +F +R+ V NT+L Y
Sbjct: 47 VSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTM--------PHRDTVSWNTMLT-AYVH 97
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALD---- 242
G D A F D DVV + +I GY H F + G LS E + G ALD
Sbjct: 98 AGDTDTAASLFGTMPDPDVVSWNTLISGYCQH--GMFRNSVG-LSMEMSRRGVALDRTTL 154
Query: 243 ----CSC-DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------Q 282
SC L+ L G +H +K GLE + L+ + CR +
Sbjct: 155 AVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGE 214
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE---------------------- 320
N W A I+G +N ++LF + +G S+
Sbjct: 215 RNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQL 274
Query: 321 --------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ ++ +V T ++D+YAK G++ A F +V +AM VG GLG
Sbjct: 275 HAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLG 334
Query: 373 EEGWVLFHHIRKHGI 387
E LF + + G+
Sbjct: 335 AEAMQLFQFMTRSGV 349
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 75/277 (27%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLV--CY---LFDGLFDRTIVFLDLYHLWSRTEWS 70
V AC + G +VH GF V C + D L+ + ++ Y ++ E
Sbjct: 359 VFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILD-LYGKCKALVEAYLVFQEMEQR 417
Query: 71 AFGSFDGLLSN-EENE-----------------------YGTALDCSCDLEFLEQGKIVH 106
S++ +++ E+NE YG+ L L+ LE G +VH
Sbjct: 418 DSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVH 477
Query: 107 GFMIKLGLELES-------DLLISLTAVCRYQP--------NVTLRNAMISGYAKNGYAE 151
G IK GL L++ D+ A+ Q + N++ISG++ +E
Sbjct: 478 GKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSE 537
Query: 152 EAVKLFPKWMDY------------------------------YIGKSEYRNNVIVNTVLI 181
EA + F + +D I K E + +++ L+
Sbjct: 538 EAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLV 597
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
DMYAKCG++ + + F++ D V +AMI GY LH
Sbjct: 598 DMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALH 634
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 91/230 (39%), Gaps = 55/230 (23%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDLYH 62
P+ T VLKAC L SL G VHG+ G F+ + D ++ + +
Sbjct: 452 PDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVD-MYCKCGAITEAQK 510
Query: 63 LWSRTEWSAFGSFDGLLS-------NEENE-----------------YGTALDCSCDLEF 98
L R S++ ++S +EE + Y T LD +L
Sbjct: 511 LHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLAT 570
Query: 99 LEQGKIVHGFMIK---LGLELESDLLISLTAVCRYQPNVTLR------------NAMISG 143
+E GK +HG +IK LG E S L+ + A C P+ L NAMI G
Sbjct: 571 IELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICG 630
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLIDMYAKCGSVDL 192
YA +G EA+++F + R NV+ N + + C V L
Sbjct: 631 YALHGQGLEALEMFERMQ---------RANVVPNHATFVAVLRACSHVGL 671
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 132/523 (25%), Positives = 198/523 (37%), Gaps = 128/523 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T L+AC L L G +HG +G + D +V L+ ++S+
Sbjct: 217 PNSRTMESGLEACGVLDELNSGRCLHGYAVKVG---------VGDSPMVISALFSMYSKC 267
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL----GLELESDLLIS 123
+ T CS E E+ + +I + GL E+ L
Sbjct: 268 ------------------HSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQ 309
Query: 124 LTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 183
QP+ L + ++SG +G K I K + +NV+V LI M
Sbjct: 310 EMMESGLQPDDVLVSCLLSGLGNSGNVHGG-----KAFHAVIMKRNFGDNVLVGNALISM 364
Query: 184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----------LHEWSAFGSFDGLLSNE 233
Y K VD A F +D + MIVGY L+ F L +
Sbjct: 365 YGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDA 424
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC----------- 279
+ CS +E L G+ H + IK L+ +S ++LI + C
Sbjct: 425 NSLVSAISSCSRLVE-LRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFG 483
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------------------------ 313
+ + +V WN +IS YA G++ AV L+ + +
Sbjct: 484 LAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALE 543
Query: 314 ------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
Y+ + + +V +NT LIDMYAKCG + A FD L DVV + M GYG
Sbjct: 544 RGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYG 603
Query: 368 LHG-----------------------------------LGEEGWVLFHHIRKHGIEPRHQ 392
+HG L EEG LF + K+ +EP +
Sbjct: 604 MHGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLK 663
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA +VDLL ++G+ A ++ MP+E + LLSA K+
Sbjct: 664 HYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKL 706
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 96/249 (38%), Gaps = 55/249 (22%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG-------- 224
+V V + L+ MYA+CG V A F+ ++DVV +A++ G + G
Sbjct: 148 SVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMV 207
Query: 225 --SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC 279
+ DG + L+ L+ L G+ +HG+ +K+G+ + L S+ + C
Sbjct: 208 RLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKC 267
Query: 280 RY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------- 314
+ +V W ++I Y G EA++LF + M+
Sbjct: 268 HSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLL 327
Query: 315 -----------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
I K + +NV+V LI MY K VD A F +D
Sbjct: 328 SGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDAD 387
Query: 358 MRSAMTVGY 366
+ M VGY
Sbjct: 388 SWNLMIVGY 396
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 123/535 (22%), Positives = 198/535 (37%), Gaps = 168/535 (31%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL----VCYLFDGLFDRTIV 56
M+ V+ +G T PLV++AC + S + VHG + +GF V G++ +
Sbjct: 126 MRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGR 185
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
D ++ R + S++ ++S Y DC E M GLE
Sbjct: 186 MDDARKVFERMAVRSCVSWNTMVSG----YALNYDCHGASEMFR-------MMGSAGLE- 233
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------ 158
PN+ +++S +A+ G E ++LF
Sbjct: 234 ---------------PNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVL 278
Query: 159 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
K + Y+ K + N + V LI +Y K G+V+ A + F K++V
Sbjct: 279 SVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIV 338
Query: 207 MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266
+A+I Y W CD F I L LE
Sbjct: 339 SWNALISSYADLGW------------------------CD----------EAFAIFLQLE 364
Query: 267 LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW--------------- 311
+ + +PNV W+A+I G+A G EEA++LF +
Sbjct: 365 KTDEYPM-------VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 417
Query: 312 ---------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+ ++ +S N++V LI+MY K GS + F++ +KD+
Sbjct: 418 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 477
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------------------------ 386
+ + M GYG+HGLGE F + K G
Sbjct: 478 ISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDK 537
Query: 387 ------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+EP+ +HYA +VDLL RAG A K + +MP+E V ALL++ ++
Sbjct: 538 MIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRM 592
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 146/363 (40%), Gaps = 120/363 (33%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLS 231
I+N L YA G +D + F RT + V +A+I G+ GLHE A + +L+
Sbjct: 63 ILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHE-QALNFYAQMLT 121
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-------------------- 271
L +E GK +H +KLG + SDL
Sbjct: 122 QGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFD--SDLYVRTGLLDVYARGGDVVSAQ 179
Query: 272 ----------LISLTAVCR------------------YQPNVTLWNAMISGYAKNGYAEE 303
L+SLTA+ + + WN MI GY +NG E
Sbjct: 180 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 239
Query: 304 AVKLFPK------------------------------WMDYYIGKSEYRNNVIVNTVLID 333
A+ LF + W+ YI + + NV V T L+D
Sbjct: 240 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 299
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE-------------------- 373
MY+KCGS++ A + FD+ DKDVV ++M VGY +HG +
Sbjct: 300 MYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNIT 359
Query: 374 ---------------EGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
EGW +F+ ++ ++GIEP+ +HY +V+LL RAG+ A++ + NM
Sbjct: 360 FIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM 419
Query: 418 PIE 420
IE
Sbjct: 420 NIE 422
>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 628
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 176/426 (41%), Gaps = 126/426 (29%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIG---- 166
NV N++ISGY G E A++LF + + D +G
Sbjct: 144 NVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVH 203
Query: 167 ----KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
K + N++V T LID+Y+K ++D + + FD +++++ ++M+ GY H
Sbjct: 204 GLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYA-HCQQP 262
Query: 223 FGSFDGLLSNEENEYGTALD---CSCDLEF------LEQGKIVHGFMIKLGLELESDLLI 273
+ +L + G L+ +C L L+ K VH +I+ GLE S L +
Sbjct: 263 VAAM--VLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEV 320
Query: 274 SLTAVCRYQPNVTL-----------------WNAMISGYAKNGYAEEAVKLFPKW----- 311
+L V + +L WNA+I G + G E A+K F K
Sbjct: 321 TLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGI 380
Query: 312 -MDYY--------IG----------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
MD + IG K+ Y +N+ V L+ MYA+CGS++ A
Sbjct: 381 DMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKR 440
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------RH--- 391
F DV+ +++ G HG G E LF +R+ G++P RH
Sbjct: 441 VFSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGL 500
Query: 392 ----------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
+HY+ +VDL +RAGY + A FI MPIE SV +AL
Sbjct: 501 LDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKAL 560
Query: 430 LSAWKI 435
LSA ++
Sbjct: 561 LSACQV 566
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 55/263 (20%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P + N M+S AK+G ++L I K + +NV + + L+DMY KCG+V
Sbjct: 77 PTAHILNRMVSSCAKSGSVFVGIQLHST-----IIKVGFDSNVYICSALVDMYGKCGAVS 131
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251
A FD ++VV +++I GY LH E L FLE
Sbjct: 132 SAQRLFDEMPHRNVVTWNSLISGY-LHVGCP-------------EIAIEL-------FLE 170
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
M+K+G++ P +A++ G + + +++
Sbjct: 171 --------MVKVGID----------------PTPFSVSAVLVGCWRMEDTKLGIQVHGLS 206
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
M K + N++V T LID+Y+K ++D + + FD +++++ ++M GY
Sbjct: 207 M-----KCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQ 261
Query: 372 GEEGWVLFHHIRKHGIEPRHQHY 394
VL +++ GI + Y
Sbjct: 262 PVAAMVLVRDMQRLGIRLNYVTY 284
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 194/493 (39%), Gaps = 142/493 (28%)
Query: 84 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI-------------SLTAVC 128
NEY A EF+ G + GF+IK G L+SD+ + L +
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGY-LQSDVCVGCGLIDMFVKGRGDLVSAF 225
Query: 129 RYQPNVTLRNA-----MISGYAKNGYAEEAVKLFPKW---------------------MD 162
+ + RNA MI+ + GYA EA+ LF M+
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANME 285
Query: 163 YYIGKSEYRNNVI---------VNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVMRSA 210
+ + + I V LI+MYAKC GS+ A FD+ LD +V +A
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345
Query: 211 MIVGY---GLHEWSAFGSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
MI GY G ++ A F G++ + + L +L L G+ V +KL
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405
Query: 264 G---LELESDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
G + ++ LIS+ A ++ N+ +N +I YAKN +EEA++LF
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELF 465
Query: 309 PKWMDYYIGKSEY------------------------------RNNVIVNTVLIDMYAKC 338
+ D +G S + + N V LI MY++C
Sbjct: 466 NEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC 525
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI---------------- 382
G+++ A F+ D++V+ +++ G+ HG + LFH +
Sbjct: 526 GNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVL 585
Query: 383 --------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
+HG+ PR +HYA +VD+L R+G + A +FI +MP +
Sbjct: 586 SACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKAD 645
Query: 423 LSVRRALLSAWKI 435
V R L A ++
Sbjct: 646 ALVWRTFLGACRV 658
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 119/291 (40%), Gaps = 63/291 (21%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHE--WSAFGSFD 227
++V +N+ LI +Y+KCG + A F R + +D++ SAM+ + + + A +F
Sbjct: 100 DSVTLNS-LISLYSKCGQWEKATSIF-RLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157
Query: 228 GLLSNE--ENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL------------ 271
++ N NEY A EF+ G + GF+IK G L+SD+
Sbjct: 158 DMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGY-LQSDVCVGCGLIDMFVK 216
Query: 272 ----LISLTAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKW-------------- 311
L+S V P N W MI+ + GYA EA+ LF
Sbjct: 217 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSG 276
Query: 312 -------MDYYIGKSEYRNNVI---------VNTVLIDMYAKC---GSVDLAPMFFDRTL 352
M+ + + + I V LI+MYAKC GS+ A FD+ L
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336
Query: 353 DKDVVMRSAMTVGYGLH-GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
D +V +AM GY G EE LF + + P H ++ + A
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 43/212 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF--LVCYL------------ 46
M + V PN T LKAC L +L +G +V LGF + C
Sbjct: 367 MILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGR 426
Query: 47 -------FDGLFDRTIV----FLDLY--HLWSRTEWSAFGSF-DGLLSNEENEYGTALDC 92
FD LF++ ++ +D Y +L S F D + + + L
Sbjct: 427 IDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG 486
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-----RYQ-------PNVTLR 137
+ + + +G+ +H +IK GL+L + LIS+ + C +Q NV
Sbjct: 487 AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISW 546
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 169
++I+G+AK+G+A +A++LF K ++ + +E
Sbjct: 547 TSIITGFAKHGFATQALELFHKMLEEGVRPNE 578
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 140/346 (40%), Gaps = 92/346 (26%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHEWSAFGSFDGLLS 231
LI MY++CG V A FD +D+V ++MI GY + + G DG
Sbjct: 157 LITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEP 216
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC--------- 279
+E + C +L LE G+ V GF+++ G+ L S LIS+ A C
Sbjct: 217 DEMSLVSVLGACG-ELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRI 275
Query: 280 ---RYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------------- 309
+V WNA+ISGYA+NG A+EA+ LF
Sbjct: 276 FDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGAL 335
Query: 310 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
K +D Y + +++++ V T LIDMYAKCGS+ A F K+ +AM
Sbjct: 336 DLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISAL 395
Query: 367 GLHGLGEEGWVLFHHIRKH--------------------------------------GIE 388
HG +E LF + G+
Sbjct: 396 ASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLV 455
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
P+ +HY+ +VDLLARAG+ A+ I MP + ALL A +
Sbjct: 456 PKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACR 501
>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 134/536 (25%), Positives = 214/536 (39%), Gaps = 143/536 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG----------- 49
M A P+ T P+V+K C L +L G H LG + ++ G
Sbjct: 98 MLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLG 157
Query: 50 -LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGF 108
+ D VF D + W++ DG +SN ALDC F E +
Sbjct: 158 MVADAERVF-DGMPVRDIVTWNSM--VDGYVSNGLG--ALALDC-----FREMHE----- 202
Query: 109 MIKLGLELESD---LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
GL+++ D ++ +L A C L +A++ G + + Y+
Sbjct: 203 ----GLQVQHDGVGIIAALAACC-------LDSALMQG---------------REVHAYV 236
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAF 223
+ +V V T L+DMY KCG++ A F + VV + MI GY L+ AF
Sbjct: 237 IRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAF 296
Query: 224 GSFDGLLSN-EENEYGTALD--CSC-DLEFLEQGKIVHGFMIKLG----LELESDLLISL 275
F + + + E TA++ +C E G+ VHG++ + + LE+ LL
Sbjct: 297 DCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMY 356
Query: 276 TAVCRYQPNVTL-----------WNAMISGYAKNGYAEEAVKLF------PKWMDY---- 314
+ V + + + T+ WN MI+ Y EA+ LF P + DY
Sbjct: 357 SKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMS 416
Query: 315 --------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
YI + +Y N +V ++ MYA+CG V + FD+ K
Sbjct: 417 AVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGK 476
Query: 355 DVVMRSAMTVGYGLHGLG-----------------------------------EEGWVLF 379
DV+ + + +GY +HG G +EGW+ F
Sbjct: 477 DVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQF 536
Query: 380 HHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ + R +GI P+ +HY + DLL RAG KFI ++PI + +LL+A +
Sbjct: 537 NLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFRIWGSLLTASR 592
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 128/520 (24%), Positives = 209/520 (40%), Gaps = 111/520 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
MQ + P+ V+KAC + L G +VH I + GF +V ++ +
Sbjct: 111 MQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGS 170
Query: 57 FLDLYHLWSR------TEWSAFGS-------------------FDGLLSNEENEYGTALD 91
+ ++ R W+A + +G+ N
Sbjct: 171 LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPV 230
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC----------RYQP--NVTL 136
C+ L LEQGK +H + I+ G+E L + L+++ A C P +V
Sbjct: 231 CA-HLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVAS 289
Query: 137 RNAMISGYAKNGYAEEAVKLFPK------------------------------WMDYYIG 166
NA+I GY+ N EA+ F + + Y
Sbjct: 290 WNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAI 349
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFG 224
+S + +N +V L++MYAKCG+V+ A F+R K+VV +A+I GY H A
Sbjct: 350 RSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALA 409
Query: 225 SFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F + + + + + + L LEQGK +HG+ I+ G E
Sbjct: 410 LFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFE-------------- 455
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
NV + ++ YAK G A KLF + + +V+ T +I Y G
Sbjct: 456 --SNVVVGTGLVDIYAKCGNVNTAQKLFERMPE---------QDVVSWTTMILAYGIHGH 504
Query: 341 VDLAPMFFDRTLDK----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYA 395
+ A F + + D + +A+ GL ++G F ++ +G+ P+ +HYA
Sbjct: 505 GEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYA 564
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAG+ + A I NM +E +V ALL A +I
Sbjct: 565 CLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRI 604
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 170/406 (41%), Gaps = 109/406 (26%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTLRNAMI 141
L+ GK +HG++ LGL L +D+L+ + V Y N+ NAMI
Sbjct: 247 LKLGKCMHGYV--LGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMI 304
Query: 142 SGYAKNGYAEEAVKLFPKWM----------------------DYYIGK-------SEYRN 172
SG +NG E+ LF + + GK + +
Sbjct: 305 SGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFES 364
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSF---- 226
N+I++T ++D+Y+KCGS+ A F+R D++V+ +AM+VG H A F
Sbjct: 365 NLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQ 424
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC--- 279
+G+ +N C+ L L++G+ +HG + +LG + L+ + A C
Sbjct: 425 EEGIAANSVTFVSLVHSCA-HLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKI 483
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
+V LWN+MI+GY +G+ +AV ++ K ++ + ++ T
Sbjct: 484 NLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQ--------T 535
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIE 388
+ + + C L E+G LF+ + R H I
Sbjct: 536 TFLSLLSACSHSRLV----------------------------EQGISLFNSMERDHNIR 567
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
P +HYA +VDLL+RAG A I MP + +V ALLS +
Sbjct: 568 PIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCR 613
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 147/363 (40%), Gaps = 94/363 (25%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG- 166
+QP L NAM+ GY ++G E ++LF +DY +G
Sbjct: 91 FQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGM 150
Query: 167 -------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
+ N V + +I K G + A FD +KDVV +++I GY
Sbjct: 151 EIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGY---- 206
Query: 220 WSAFGSFDGLLSNEENEYG----------TALDCSC-DLEFLEQGKIVHGFMIKLGLELE 268
G FD +G T+L +C + L+ GK +HG++ LGL L
Sbjct: 207 -VQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYV--LGLGLG 263
Query: 269 SDLLISLTAVCRYQP-----------------NVTLWNAMISGYAKNGYAEEAVKLFPKW 311
+D+L+ + V Y N+ WNAMISG +NG E+ LF +
Sbjct: 264 NDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRL 323
Query: 312 M----------------------DYYIGK-------SEYRNNVIVNTVLIDMYAKCGSVD 342
+ GK + +N+I++T ++D+Y+KCGS+
Sbjct: 324 VRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLK 383
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
A F+R D++V+ +AM VG +G E+ LF +++ GI + +V A
Sbjct: 384 QATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCA 443
Query: 403 RAG 405
G
Sbjct: 444 HLG 446
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 159/380 (41%), Gaps = 100/380 (26%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS 168
QP+V+ N MI GYAK G+ EA++L+ K + D +GK
Sbjct: 193 QPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKG 252
Query: 169 E----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
Y +N+I+ L+DMY KC LA FD KD+ + M+VG+
Sbjct: 253 VHGWIERRGPVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRL 312
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDL 271
G E +A FD + + + + L C CD + EL ++
Sbjct: 313 GDME-AAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVR--------------ELFYEM 357
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331
LI V + +P+ ++ISG A NG +W+ + + + + +++ L
Sbjct: 358 LI----VEKVKPDRVTMVSLISGAANNGELSHG-----RWVHGLMIRLQLEGDAFLSSAL 408
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------- 372
IDMY KCG ++ A M F +KDV + ++M G+ HG G
Sbjct: 409 IDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTPNK 468
Query: 373 ----------------EEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
EEG +F+H++ K G P +HY +VDLL RAG A +
Sbjct: 469 VTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAKDIVQ 528
Query: 416 N-MPIELRLSVRRALLSAWK 434
N MP+ S+ ++LSA +
Sbjct: 529 NKMPMRPSQSMWGSILSACR 548
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 50/244 (20%)
Query: 189 SVDLAPMFF-DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN-EYGTALDCSCD 246
++DLA + F D T + +V + + MI + FG + ++ + + T L
Sbjct: 82 NLDLAKLLFLDFTPNPNVFVYNTMISAVSSSKNECFGLYSSMIRYRVSPDRQTFLHLMKA 141
Query: 247 LEFLEQGKIVH----------------GFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
FL + K +H ++K +EL S QP+V+ +N
Sbjct: 142 SSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNV 201
Query: 291 MISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS--------- 319
MI GYAK G+ EA++L+ K + D +GK
Sbjct: 202 MIVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRG 261
Query: 320 -EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVL 378
Y +N+I+ L+DMY KC LA FD KD+ + M VG+ G E +
Sbjct: 262 PVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAV 321
Query: 379 FHHI 382
F +
Sbjct: 322 FDQM 325
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 153/348 (43%), Gaps = 87/348 (25%)
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLS 231
V ++ L+ MY+KC S++ A FD + D++ + SAM+ GY + S A F + S
Sbjct: 245 VALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFS 304
Query: 232 N--EENEYGTA--LDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAV------ 278
+ +EY L+ D+ +L +GK +H F++KLG E + L+ + A
Sbjct: 305 AGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLAD 364
Query: 279 ------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI---------------- 316
C + +V LW ++ISGY +N EEA+ L+ + I
Sbjct: 365 ARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSS 424
Query: 317 ------GKSEYRNN--------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
GK + + V + + L MY KCGS++ + F RT +KDVV +AM
Sbjct: 425 LATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAM 484
Query: 363 TVGYGLHGLGEE-----------------------------------GWVLFHHIR-KHG 386
G +G G+E GW FH + + G
Sbjct: 485 ISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFG 544
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
++P+ HYA +VD+L+RAG +FI + I+ L + R LLSA K
Sbjct: 545 LDPKVDHYACMVDVLSRAGQLKETKEFIESASIDHGLCLWRILLSACK 592
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 54/273 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
++ V+T L+ MY K G L +++ L KDV+ R L F
Sbjct: 154 DIYVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVLRRQ-------LKSSICFLEEKEKE 206
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVCRY------ 281
S+ + + L ++ G+ +HG +K LG S+ L+++ + C
Sbjct: 207 SDSDYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACK 266
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------- 321
N W+AM++GY++NG + EA+KLF + I SEY
Sbjct: 267 MFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICY 326
Query: 322 ----------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
++ T L+DMYAK G + A FD ++DV + +++ G
Sbjct: 327 LVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISG 386
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
Y + EE +L+ ++ GI P A V+
Sbjct: 387 YVQNSDNEEALILYRRMKTAGIIPNDPTMASVL 419
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 82/212 (38%), Gaps = 59/212 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M A + P+ T VL AC + L+ G ++H + LGF +LF T +D+
Sbjct: 302 MFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFER-HLF-----ATTALVDM 355
Query: 61 YH--------------LWSR--TEWSAFGSFDGLLSNEENE------------------- 85
Y L R W++ G + N +NE
Sbjct: 356 YAKAGCLADARKGFDCLQERDVALWTSL--ISGYVQNSDNEEALILYRRMKTAGIIPNDP 413
Query: 86 -YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA-------------VCRYQ 131
+ L L LE GK VHG IK G LE + +L+ V R
Sbjct: 414 TMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRT 473
Query: 132 PN--VTLRNAMISGYAKNGYAEEAVKLFPKWM 161
PN V NAMISG + NG +EA++LF + +
Sbjct: 474 PNKDVVSWNAMISGLSHNGQGDEALELFEEML 505
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 122/473 (25%), Positives = 185/473 (39%), Gaps = 145/473 (30%)
Query: 105 VHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLRNAMISGYAKNGY 149
VHG+ IK+GLE + S L+++ + C + +V L N M+ GY + G
Sbjct: 205 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 264
Query: 150 AEEAVKLFPKWM------------------------DYYIGK--------SEYRNNVIVN 177
+EA +LF ++ D +GK S ++V V
Sbjct: 265 EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVA 324
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSFDGLLSNEE 234
L++MY+K G A F+ D++ ++MI L E S D L +
Sbjct: 325 NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLK 384
Query: 235 NEYGT---------ALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-------------- 271
++ T A C C L L+QGK +H IK G +SDL
Sbjct: 385 PDHFTLASITLATAAKACGC-LVLLDQGKQIHAHAIKAG--FDSDLHVNSGILDMYIKCG 441
Query: 272 -LISLTAVCRY--QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------- 321
+++ V Y P+ W +MISG NG ++A++++ + + EY
Sbjct: 442 DMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIK 501
Query: 322 --------------RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
NVI V T L+DMYAKCG+++ A F + +++ +
Sbjct: 502 ASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 561
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
+AM VG HG EE LF ++ HGIEP
Sbjct: 562 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMP 621
Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY+ +VD L RAG A K I MP + S+ RALL A +I
Sbjct: 622 NDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRI 674
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 74/347 (21%)
Query: 113 GLELESDLLISLTAVCRYQPNVTLRNAMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEY 170
GL L L SL + R L+ + SG +A G A+K+ +W
Sbjct: 167 GLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEW---------- 216
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
+V V+ L+++Y+KCG + A + FD ++DVV+ + M+ GY GL E AF F
Sbjct: 217 --DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL-EKEAFQLFS 273
Query: 228 GLLSN--EENEYGTALDCSCDL----EFLEQGKIVHGFMIKLGLELESDLLISLTAV--- 278
+ +E+ L + L + LE GK VHG +K GL+ + + SL +
Sbjct: 274 EFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSK 333
Query: 279 --CRY----------QPNVTLWNAMISGYAKNGYAEEAVKLF------------------ 308
C Y ++ WN+MIS A++ EE+V LF
Sbjct: 334 MGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASI 393
Query: 309 -----------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
K + + K+ + +++ VN+ ++DMY KCG + A + F+
Sbjct: 394 TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 453
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
D V ++M G +G ++ ++H +R+ + P +A ++
Sbjct: 454 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLI 500
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 62/272 (22%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-------------GLHEWSAFGSF 226
L+ MY+KCGS+ A FD T ++D+V +A++ Y GLH + +
Sbjct: 118 LLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRA- 176
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC---- 279
L S L + L + VHG+ IK+GLE + S L+++ + C
Sbjct: 177 -SLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMR 235
Query: 280 --------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------- 312
+ +V LWN M+ GY + G +EA +LF ++
Sbjct: 236 DARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCL 295
Query: 313 -----DYYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
D +G KS ++V V L++MY+K G A F+ D++
Sbjct: 296 WAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISW 355
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391
++M L EE LF + G++P H
Sbjct: 356 NSMISSCAQSSLEEESVNLFIDLLHEGLKPDH 387
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 50/178 (28%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---------------LISLTAVCRY-- 130
A C C L L+QGK +H IK G + SDL +++ V Y
Sbjct: 398 AAKACGC-LVLLDQGKQIHAHAIKAGFD--SDLHVNSGILDMYIKCGDMVNAGIVFNYIS 454
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
P+ +MISG NG ++A++++ + + EY
Sbjct: 455 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ 514
Query: 171 -RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
NVI V T L+DMYAKCG+++ A F + +++ + +AM+VG H
Sbjct: 515 LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 572
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--------- 132
+E + T + S + LEQG+ +H +IKL + SD + + V Y
Sbjct: 492 DEYTFATLIKASSCVTALEQGRQLHANVIKL--DCVSDPFVGTSLVDMYAKCGNIEDAYR 549
Query: 133 --------NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
N+ L NAM+ G A++G AEEAV LF + I
Sbjct: 550 LFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGI 590
>gi|356544972|ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Glycine max]
Length = 622
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 163/380 (42%), Gaps = 82/380 (21%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
++ ++TL N ++ + G +E K + +++ S++++++++ ++ MYA+CG+
Sbjct: 60 FELDLTLYNTLLKRCTQLGKLKEG-----KLVHFHMFNSKFKDDLVIQNFVLFMYARCGN 114
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLS--NEENEY--GTALDC 243
+ F+ L KD+V ++MI GY +E + F +LS + N + + +
Sbjct: 115 LKDTQHVFNEKLQKDMVTWTSMISGYAQNERAKDTLVLFPRILSEGTKLNXFILSSLIHA 174
Query: 244 SCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300
SC + V ++ + L + L+ + C+ N WNA+I GYAK G
Sbjct: 175 SCWMYGCHSNVFVGSSLVNMXARCGYLGEEXLVFDNSWCK---NEVSWNALIGGYAKKGE 231
Query: 301 AEEAVKLF------------------------------PKWMDYYIGKSEYRNNVIVNTV 330
EEA+ L+ KW+ ++ K + V V
Sbjct: 232 GEEALALYLRMQMEAYKPIQFTYSGILSSYLSMGCLEQGKWLLAHLMKPGQKLVVYVGNT 291
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-------- 382
L+ MYAK G + FFD+ + DVV ++M Y HGLG+E F +
Sbjct: 292 LLHMYAKLGKIRDVEKFFDKLVKVDVVSCNSMLTRYAQHGLGKEAMQQFEEMISFGIEPN 351
Query: 383 ---------------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
RK+ IEP+ HYA ++DLL AG + A FI
Sbjct: 352 DITVLFVLSSCSHARLLDEGKHYFGLMRKYSIEPKVSHYATIIDLLGXAGLLDQAESFIE 411
Query: 416 NMPIELRLSVRRALLSAWKI 435
MPIE +++ ALL K+
Sbjct: 412 EMPIEPIVAIXGALLGDSKM 431
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 196/489 (40%), Gaps = 140/489 (28%)
Query: 103 KIVHGFMIKLGLELESDLLIS--LTAVC--------RY---------QPNVTLRNAMISG 143
K +H +IK ++ L IS L+A+C RY PN+ L NA+I G
Sbjct: 39 KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRG 98
Query: 144 YA-KNGYAEEAVKLFPKWMDYYIGKSEYR------------------------------N 172
A N + E + ++ + + I Y +
Sbjct: 99 LATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLAS 158
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS---FDGL 229
+V V+ L+ MYA C + A FD + +D+V + MI GY ++ G F+
Sbjct: 159 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMC 218
Query: 230 LSNEENEYGT---ALDCSCDLEFLEQGKIVHGFMIK---LGLEL-ESDLLISLTAVC--- 279
N + + T L L L G+ +H ++I+ + L++ + L+ + C
Sbjct: 219 GENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDA 278
Query: 280 -------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPK-------------------- 310
+ P NV WN+MISG A+ G +E++ +F K
Sbjct: 279 NFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSC 338
Query: 311 ----------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
W+ Y+ +++ R + + L+DMYAKCGS+D A F KDV +
Sbjct: 339 ANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYT 398
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------------- 391
AM VG +HG G + LF + K GIEP
Sbjct: 399 AMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTI 458
Query: 392 -------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI--PMQQWEN 442
+HY +VDLL RAG N A +FI NMPIE V ALL A KI ++ E+
Sbjct: 459 YNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGES 518
Query: 443 MLQTIRGID 451
+++ I I+
Sbjct: 519 VMKKIEKIE 527
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 104/460 (22%), Positives = 171/460 (37%), Gaps = 126/460 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVC------- 44
+ P+ T P VLKAC ++ G VHGQ +G + VC
Sbjct: 121 IVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSAR 180
Query: 45 YLFDGLFDRTIV-FLDLYHLWSRTEWSAFGS---FDGLLSNEENEYGT---ALDCSCDLE 97
+FD R +V + + + + ++ G F+ N + + T L L
Sbjct: 181 KVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLG 240
Query: 98 FLEQGKIVHGFMIK---LGLEL-ESDLLISLTAVC----------RYQP--NVTLRNAMI 141
L G+ +H ++I+ + L++ + L+ + C + P NV N+MI
Sbjct: 241 DLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMI 300
Query: 142 SGYAKNGYAEEAVKLFPK------------------------------WMDYYIGKSEYR 171
SG A+ G +E++ +F K W+ Y+ +++ R
Sbjct: 301 SGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 360
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
+ + L+DMYAKCGS+D A F KDV +AMIVG +H
Sbjct: 361 ADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMH------------- 407
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
+ G ALD F E M K+G+E + + + C +
Sbjct: 408 ---GQGGKALDL-----FSE--------MPKMGIEPDEVTFVGVLTACSHV--------- 442
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF-DR 350
G EE K F Y R + ++D+ + G ++ A F +
Sbjct: 443 -------GLVEEGRKYFEDMSTIY----NLRPQLEHYGCMVDLLGRAGLINEAEEFIRNM 491
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390
++ D + A+ +HG E G + I K IEPR
Sbjct: 492 PIEPDAFVLGALLGACKIHGKVELGESVMKKIEK--IEPR 529
>gi|222629606|gb|EEE61738.1| hypothetical protein OsJ_16261 [Oryza sativa Japonica Group]
Length = 767
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/440 (24%), Positives = 177/440 (40%), Gaps = 120/440 (27%)
Query: 138 NAMISGYAKNGYAEEAVKLF---------PKWMDYY---------------------IGK 167
AM+SGYA+NG EA++LF P Y K
Sbjct: 290 TAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAK 349
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGS 225
+ ++ V + L+DM+ +CGSV+ A F KDVV +A+I G+ H+ A G
Sbjct: 350 GRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGL 409
Query: 226 FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AV 278
F +L + G+AL + +++H +IKLG E ++ SL A
Sbjct: 410 FSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAK 469
Query: 279 CRY------------QPNVTLWNAMISGYAKN-GYAEEAVKLFPK------WMD------ 313
CR +P++ A+ISGY + Y+E+A++LF K W+D
Sbjct: 470 CRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSS 529
Query: 314 ------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
Y+ K + ++ ++ L+DMYAK G A FD ++
Sbjct: 530 VLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRN 589
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHH---------------------------------- 381
V+ +++ G +G GE+ LF+
Sbjct: 590 VISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFT 649
Query: 382 --IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI--PM 437
+ ++GI+PR +HY+ +DLLAR G A+K + ++ S+ A+L A K+ M
Sbjct: 650 SMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLGACKLHGNM 709
Query: 438 QQWENMLQTIRGIDEGEKTD 457
E + + ID G +
Sbjct: 710 LLGETAAKNLFSIDPGSSVN 729
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 123/535 (22%), Positives = 198/535 (37%), Gaps = 168/535 (31%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL----VCYLFDGLFDRTIV 56
M+ V+ +G T PLV++AC + S + VHG + +GF V G++ +
Sbjct: 964 MRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGR 1023
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
D ++ R + S++ ++S Y DC E M GLE
Sbjct: 1024 MDDARKVFERMAVRSCVSWNTMVSG----YALNYDCHGASEMFR-------MMGSAGLE- 1071
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------ 158
PN+ +++S +A+ G E ++LF
Sbjct: 1072 ---------------PNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVL 1116
Query: 159 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
K + Y+ K + N + V LI +Y K G+V+ A + F K++V
Sbjct: 1117 SVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIV 1176
Query: 207 MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266
+A+I Y W CD F I L LE
Sbjct: 1177 SWNALISSYADLGW------------------------CD----------EAFAIFLQLE 1202
Query: 267 LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW--------------- 311
+ + +PNV W+A+I G+A G EEA++LF +
Sbjct: 1203 KTDEYPM-------VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 1255
Query: 312 ---------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+ ++ +S N++V LI+MY K GS + F++ +KD+
Sbjct: 1256 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 1315
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------------------------ 386
+ + M GYG+HGLGE F + K G
Sbjct: 1316 ISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDK 1375
Query: 387 ------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+EP+ +HYA +VDLL RAG A K + +MP+E V ALL++ ++
Sbjct: 1376 MIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRM 1430
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 126/567 (22%), Positives = 217/567 (38%), Gaps = 173/567 (30%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG--LFD------RTIVFLDLYHL 63
T +VLK+C +L G ++HG +GF C + G L D + + +H
Sbjct: 176 TFAVVLKSCSSLEDHGGGIQIHGLAVKMGF-DCDVVTGSALLDMYAKCKKLDCSIQFFHS 234
Query: 64 WSRTEWSAFGSF-DGLLSNE--------------------ENEYGTALDCSCDLEFLEQG 102
W ++ + G + N+ ++ + + L L G
Sbjct: 235 MPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLG 294
Query: 103 KIVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNVTLR--NAMISGYA 145
+HG +K + +D++I + Y PN L+ NA+I GYA
Sbjct: 295 SQLHGHALKT--DFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA 352
Query: 146 KN--GYAEEAVKLFPKWMDYYIGKSEY--------------RNNVIVNTVLIDMYAKCGS 189
++ G + V L + + K + ++N+ V ++DMY KCG+
Sbjct: 353 RSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGA 412
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
+ A + F+ + +D V +A+I HE + NEE
Sbjct: 413 LVEACLVFEEMVSRDAVSWNAIIAA---HEQNG---------NEEKTLSL---------- 450
Query: 250 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLWNAMISG 294
+H +IK L L+S + LI + + C + V WNA+ISG
Sbjct: 451 -----FIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 505
Query: 295 YAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYRNN 324
++ +EEA K F K ++ I K E +++
Sbjct: 506 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 565
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+++ L+DMY+KCG++ + F++ ++D V +AM GY HGLGEE +F +++
Sbjct: 566 AYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQL 625
Query: 385 HGIEPRH------------------------------------QHYARVVDLLARAGYSN 408
++P H +HY+ VVD++ R+G +
Sbjct: 626 ENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS 685
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKI 435
A + I MP E + R LLS KI
Sbjct: 686 KALELIEGMPFEADAVIWRTLLSICKI 712
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 134/357 (37%), Gaps = 81/357 (22%)
Query: 70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 129
S F S+ + ++ +CS D + L GK H MI +
Sbjct: 30 SPFSSYQATPTKKKTFSHIFQECS-DRKALCPGKQAHARMI----------------LTE 72
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
++P V + N +I Y K E A K+F R+ V N +L YA G
Sbjct: 73 FKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM--------PQRDTVSWNAMLFG-YAGRGD 123
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN-------EENEYGTALD 242
+ +A FD ++DVV +++I GY LH D L + + L
Sbjct: 124 IGVAQKLFDAMPERDVVSWNSLISGY-LHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLK 182
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTL 287
LE G +HG +K+G + + L+ + A C+ + N
Sbjct: 183 SCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVS 242
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------ 317
W+A+I+G +N ++LF + +G
Sbjct: 243 WSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHAL 302
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL--HGLG 372
K+++ +V++ T +DMY KC ++ A F+ + ++ +A+ VGY GLG
Sbjct: 303 KTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLG 359
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 57/222 (25%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ-------------- 131
Y T LD +L +E GK +H +IK EL+SD IS T V Y
Sbjct: 534 YATILDTCANLVTVELGKQIHAQIIK--KELQSDAYISSTLVDMYSKCGNMQDFQLIFEK 591
Query: 132 -PNVTLR--NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
PN NAM+ GYA++G EEA+K+F Y+ + N + + + CG
Sbjct: 592 APNRDFVTWNAMVCGYAQHGLGEEALKIFE-----YMQLENVKPN---HATFLAVLRACG 643
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE 248
+ L V GLH + + S GL E+ SC ++
Sbjct: 644 HMGL--------------------VEKGLHYFHSMLSNYGLDPQLEHY-------SCVVD 676
Query: 249 FL-EQGKIVHGFMIKLGLELESDLLI--SLTAVCRYQPNVTL 287
+ G++ + G+ E+D +I +L ++C+ NV +
Sbjct: 677 IMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEV 718
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 162/406 (39%), Gaps = 120/406 (29%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------- 166
N+MISGY NG E ++++ + M Y+G
Sbjct: 220 NSMISGYVSNGLTERGLEIYKQMM--YLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277
Query: 167 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
KS + + + L+DMY+KCG +D A F++ +++VV ++MI GY + G
Sbjct: 278 IKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY-----TRDGR 332
Query: 226 FDG---LLSNEENEYGTALDCSCDLEFL---------EQGKIVHGFMIKLGLELESDLLI 273
DG LL E E G LD L + GK VH + IK +ES+L +
Sbjct: 333 SDGAIRLLQQMEKE-GVKLDVVATTSILHACARSGSLDNGKDVHDY-IKAN-NMESNLFV 389
Query: 274 SLTAVCRYQP-----------------NVTLWNAMISGYAKNGYAEEAVKLFP------- 309
+ Y ++ WN MI + + P
Sbjct: 390 CNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACI--LPACASLSA 447
Query: 310 ----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
K + YI ++ Y ++ V L+D+Y KCG + LA + FD KD+V + M G
Sbjct: 448 LERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISG 507
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEP------------------------------------ 389
YG+HG G E F+ +R GIEP
Sbjct: 508 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEP 567
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +HYA +VDLL+R G + A++FI +PI ++ ALL +I
Sbjct: 568 KLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRI 613
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 136/354 (38%), Gaps = 100/354 (28%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---------- 128
E Y + L + L GK VH + + ++ L L+SL A C
Sbjct: 98 ETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVF 157
Query: 129 --RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
+ NV L N M+S YAK G +E++ LF ++++ +
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIE 197
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEY-GTALD 242
+ A FD+ D+DV+ ++MI GY GL E GL ++ Y G +D
Sbjct: 198 GKRPESASELFDKLCDRDVISWNSMISGYVSNGLTE-------RGLEIYKQMMYLGIDVD 250
Query: 243 CSCDLEF---------LEQGKIVHGFMIKLGLELE---SDLLISLTAVC----------- 279
+ + L GK VH IK E S+ L+ + + C
Sbjct: 251 LATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFE 310
Query: 280 -RYQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------------- 309
+ NV W +MI+GY ++G ++ A++L
Sbjct: 311 KMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDN 370
Query: 310 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
K + YI + +N+ V L+DMY KCGS+D A F + KD++ + M
Sbjct: 371 GKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTM 424
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 35/171 (20%)
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---------- 279
E Y + L + L GK VH + + ++ L L+SL A C
Sbjct: 98 ETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVF 157
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+ NV LWN M+S YAK G +E++ LF ++++ +
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIE 197
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+ A FD+ D+DV+ ++M GY +GL E G ++ + GI+
Sbjct: 198 GKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGID 248
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 119/472 (25%), Positives = 185/472 (39%), Gaps = 142/472 (30%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--LISLTAVC-------RYQPNVTL 136
+ AL +L+ L+ GK +H ++K+ L L+ + A C + ++TL
Sbjct: 145 FSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITL 204
Query: 137 RN-----AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-------------- 177
RN +MI+GY KN EE + LF + + + +EY ++
Sbjct: 205 RNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWF 264
Query: 178 ----------------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
T L+DMY KCG + A F+ D+VM +AMIVGY +
Sbjct: 265 HGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGY-----T 319
Query: 222 AFGSFDGLLSNEENEYGTALDCSCD-----------LEFLEQGKIVHGFMIKLGL--ELE 268
GS + LS + G + +C +E LE G+ VHG IK+G+
Sbjct: 320 HNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNV 379
Query: 269 SDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM---- 312
++ L+ + A C + ++ WN++ISG+++NG EA+ LF +
Sbjct: 380 ANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESV 439
Query: 313 ------------------DYYIGKSEY----------RNNVIVNTVLIDMYAKCGSVDLA 344
+G S + ++V V T L+D YAKCG A
Sbjct: 440 TPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA 499
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLH----------------------------------- 369
+ FD +K+ + SAM GYG
Sbjct: 500 RLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHT 559
Query: 370 GLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
G+ EG F + K + P +HY +VD+LARAG A I MPI+
Sbjct: 560 GMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQ 611
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 128/311 (41%), Gaps = 55/311 (17%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG--SFDGLLSN 232
+V T L+DMYAKCG + A F+ ++VV ++MI GY ++ G F+ + N
Sbjct: 177 VVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN 236
Query: 233 ----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---C------ 279
E YGT + L L QGK HG ++K G+EL S L+ SL + C
Sbjct: 237 NVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNA 296
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------------------- 312
++ +W AMI GY NG EA+ LF K
Sbjct: 297 RRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLI 356
Query: 313 -DYYIGKSEYRNNVIVN-------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ +G+S + ++ V L+ MYAKC A F+ +KD+V +++
Sbjct: 357 ENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIIS 416
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR-----AGYSNHAFKFIMNMPI 419
G+ +G E LFH + + P A + A G S HA+ +
Sbjct: 417 GFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLA 476
Query: 420 ELRLSVRRALL 430
+ V ALL
Sbjct: 477 SSSVHVGTALL 487
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 115/279 (41%), Gaps = 56/279 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--FGSFDGLL 230
++ + T L+ +Y G A + FD+ + D + M+ Y L++ S +D L+
Sbjct: 75 DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLM 134
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKL---------GL--------ELES 269
+ ++ + AL +L+ L+ GK +H ++K+ GL E++S
Sbjct: 135 KHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKS 194
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN- 328
+ R NV W +MI+GY KN EE + LF + + + +EY ++
Sbjct: 195 AHKVFNDITLR---NVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMA 251
Query: 329 -----------------------------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
T L+DMY KCG + A F+ D+VM
Sbjct: 252 CTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMW 311
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+AM VGY +G E LF ++ I+P A V+
Sbjct: 312 TAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVL 350
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 145/378 (38%), Gaps = 102/378 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVC------------RYQPNVTLRNAMI 141
+E LE G+ VHG IK+G+ ++ L+ + A C + ++ N++I
Sbjct: 356 IENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSII 415
Query: 142 SGYAKNGYAEEAVKLFPKWM----------------------DYYIGKSEY--------- 170
SG+++NG EA+ LF + +G S +
Sbjct: 416 SGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFL 475
Query: 171 -RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
++V V T L+D YAKCG A + FD +K+ + SAMI GYG
Sbjct: 476 ASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYG------------- 522
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+QG + LEL ++L + +PN + +
Sbjct: 523 ---------------------KQGDTIG------SLELFEEMLKK-----QQKPNESTFT 550
Query: 290 AMISGYAKNGYAEEAVKLFPK-WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+++S G E K F + DY S T ++DM A+ G ++ A
Sbjct: 551 SILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKH-----YTCMVDMLARAGELEQALDII 605
Query: 349 DRT-LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-QHYARVVDLLARAGY 406
++ + DV A G G+H + G ++ + + P +Y V +L A G
Sbjct: 606 EKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLD--LHPDDASYYVLVSNLYASDGR 663
Query: 407 SNHAFKFIMNMPIELRLS 424
N A K + N+ + LS
Sbjct: 664 WNQA-KEVRNLMKQRGLS 680
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 111/427 (25%), Positives = 168/427 (39%), Gaps = 110/427 (25%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNV 134
L L F+++G HGF+ K G+ + + LI L C Q +
Sbjct: 130 LKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDS 189
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
N+MI GY K G E A +LF + SE +N + N+++ + VD+A
Sbjct: 190 VSYNSMIDGYVKCGLIESARELFD------LMPSEKKNLISWNSMINGYAQRADGVDIAS 243
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
FD +KD++ +++I GY H A FD + + + T +D L F+ Q
Sbjct: 244 NLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQ 303
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF---- 308
K + M Q +V +N+M++GY +N Y EA+ +F
Sbjct: 304 AKSLFDQMP--------------------QRDVVAYNSMMAGYVQNRYHMEAIDIFNDME 343
Query: 309 -------------------------PKWMDY--YIGKSEYRNNVIVNTVLIDMYAKCGSV 341
K MD Y + ++ + LIDMY+KCGS+
Sbjct: 344 KESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSI 403
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
A F+R +K + +AM G +HGLGE + + I
Sbjct: 404 QQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNAC 463
Query: 383 -----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
RKH IEPR QHY +VD+L+R+G A I MPIE +
Sbjct: 464 SHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVI 523
Query: 426 RRALLSA 432
R L+A
Sbjct: 524 WRTFLTA 530
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 144/605 (23%), Positives = 231/605 (38%), Gaps = 180/605 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV--------------CYL 46
M+V+ + + CT P +LKAC L G VHG G++ C
Sbjct: 171 MRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCND 230
Query: 47 FDG---LFDRTIVFLDLYHLWSR--TEWSAFG-SFDGL----------LSNEENEYGTAL 90
+G LFDR D+ W+ + +S+ G S + L L+ + AL
Sbjct: 231 LNGARQLFDRMPEKEDVVS-WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAAL 289
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY-----QPNVTLR----- 137
D F++QG +H ++K + ++ LI++ A R+ N+
Sbjct: 290 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNMDDWD 347
Query: 138 ----NAMISGYAKNGYAEEAVKLFPKWMDY------------------------------ 163
N+M+SG+ +NG EA++ + + D
Sbjct: 348 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHA 407
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
Y K+ +++ V L+DMYAK S+ FD+ DKDVV + +I G H +
Sbjct: 408 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAG---HAQNGS 464
Query: 224 GSFDGLLSNEENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
S L E G LD CS L+ + K +H ++I+ GL SDL++
Sbjct: 465 HSRALELFREVQLEGIDLDVMMISSILLACS-GLKLISSVKEIHSYIIRKGL---SDLVL 520
Query: 274 SLTAVCRYQ-----------------PNVTLWNAMISGYAKNGYAEEAVKLFP------- 309
V Y +V W +MIS Y NG A EA++LF
Sbjct: 521 QNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGV 580
Query: 310 -----------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
K + ++ + + + + L+DMYA+CG+++ +
Sbjct: 581 EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRN 640
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------- 391
F+ +KD+V+ ++M YG+HG G LF + I P H
Sbjct: 641 VFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGL 700
Query: 392 ---------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
+HYA +VDLL RA + A++F+ M +E V ALL
Sbjct: 701 MNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALL 760
Query: 431 SAWKI 435
A +I
Sbjct: 761 GACQI 765
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 150/370 (40%), Gaps = 100/370 (27%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL---- 229
VN LI MYA+CG + A FD D+D+V ++MI GY ++ A G F +
Sbjct: 165 VNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEG 224
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-------------LISLT 276
+E + L DL L G+ V GF+++ +E+ S + LIS
Sbjct: 225 FEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISAR 284
Query: 277 AVCRYQPN--VTLWNAMISGYAKNGYAEEAVKLFP------------------------- 309
V PN V WNA+I+GYA+NG + EA+ LF
Sbjct: 285 RVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIG 344
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
KW++ + + +++V V + LIDMYAKCGS+D A F+ K+ V +AM
Sbjct: 345 ALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMIS 404
Query: 365 GYGLHGLGEEGWVLFHHIRKH--------------------------------------G 386
HG +E LF + K G
Sbjct: 405 ALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFG 464
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQT 446
+ P+ +HY+ +VDL ARAG A+ I MP + V +LL A Q
Sbjct: 465 LVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGA-----------CQR 513
Query: 447 IRGIDEGEKT 456
R D GE+
Sbjct: 514 RRNADVGERV 523
>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Glycine max]
Length = 699
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 105/415 (25%), Positives = 164/415 (39%), Gaps = 123/415 (29%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------------------------R 171
+MI Y +N A E + LF + + ++ +E+ +
Sbjct: 203 TSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIK 262
Query: 172 NNVIVN----TVLIDMYAKCGSVDLAPMFFDRT----LDKDVVMRSAMIVGYGLHEWSAF 223
N + VN T L++MY KCG++ A FD + D+D+V +AMIVGY +
Sbjct: 263 NGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHL 322
Query: 224 G-------SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES--DLLIS 274
+ G+L N C+ L GK++HG +K GL+ + L+
Sbjct: 323 ALELFKDKKWSGILPNSVTVSSLLSSCA-QLGNSVMGKLLHGLAVKCGLDDHPVRNALVD 381
Query: 275 LTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMD 313
+ A C + +V WN++ISG+ ++G A EA+ LF P +
Sbjct: 382 MYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDAVT 441
Query: 314 Y-------------YIGKSEYR---------NNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
++G S + +++ V T L++ YAKCG A M FD
Sbjct: 442 VVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDSM 501
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------- 391
+K+ V AM GYG+ G G LF + + +EP
Sbjct: 502 GEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILAACSHSGMVGEGS 561
Query: 392 ----------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
+HYA +VD+LARAG A FI MP++ +SV A L
Sbjct: 562 RLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSVSVFGAFL 616
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 122/286 (42%), Gaps = 58/286 (20%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHEWSAFG------ 224
++ V T L+D YAK VD A FD + DVV ++MIV Y ++ + G
Sbjct: 165 SDSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNR 224
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL--------- 275
+ + E G+ + L +L QGK VHGF+IK G+ + S L SL
Sbjct: 225 MREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGN 284
Query: 276 ----------TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF--PKWMDYYIGK----- 318
++ Y ++ W AMI GY++ GY A++LF KW
Sbjct: 285 IQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSS 344
Query: 319 -----SEYRNNVI-----------------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
++ N+V+ V L+DMYAKCG V A F+ L+KDV
Sbjct: 345 LLSSCAQLGNSVMGKLLHGLAVKCGLDDHPVRNALVDMYAKCGVVSDARCVFEAMLEKDV 404
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
V +++ G+ G E LF R+ G+E VV +L+
Sbjct: 405 VSWNSIISGFVQSGEAYEALNLF---RRMGLELFSPDAVTVVGILS 447
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 114/431 (26%), Positives = 171/431 (39%), Gaps = 110/431 (25%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RY 130
+ AL L F+++G VHGF+IK G + + LI L C
Sbjct: 131 FSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMP 190
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
Q + N+MI GY K G E A +LF + E RN + N+++ + V
Sbjct: 191 QRDSVSYNSMIDGYLKCGLVESAGELFG------LMPREKRNLITWNSMIGGYAQRADGV 244
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLE 248
++A FD +KD++ ++MI GY H A G FD + + + +D
Sbjct: 245 NVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMID------ 298
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
G+ KLGL E+ L +V ++N+M+SG +N Y EA+++F
Sbjct: 299 ---------GYG-KLGLVHEAKTLFDQMP----HRDVVVYNSMMSGXVQNRYHMEALEVF 344
Query: 309 PKW-------------------------------MDYYIGKSEYRNNVIVNTVLIDMYAK 337
M YI + ++ ++ + LIDMY+K
Sbjct: 345 NHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSK 404
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI--------------- 382
CGS+ A F+ K + +AM G +HGLGE + + I
Sbjct: 405 CGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGV 464
Query: 383 ---------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
RKH IEPR QHY +VD+LAR+G A I MPIE
Sbjct: 465 LNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEP 524
Query: 422 RLSVRRALLSA 432
+ R L+A
Sbjct: 525 NDVIWRTFLTA 535
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 195/493 (39%), Gaps = 142/493 (28%)
Query: 84 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI-------------SLTAVC 128
NEY A EF+ G + GF++K G L+SD+ + L +
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY-LQSDVCVGCGLIDMFVKGRGDLVSAF 225
Query: 129 RYQPNVTLRNA-----MISGYAKNGYAEEAVKLFPKW---------------------MD 162
+ + RNA MI+ + GYA EA+ LF + M+
Sbjct: 226 KVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANME 285
Query: 163 YYIGKSEYRNNVI---------VNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVMRSA 210
+ + + I V LI+MYAKC GS+ A FD+ LD +V +A
Sbjct: 286 LLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTA 345
Query: 211 MIVGY---GLHEWSAFGSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
MI GY G ++ A F G++ + + L +L L G+ V +KL
Sbjct: 346 MITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL 405
Query: 264 G---LELESDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
G + ++ LIS+ A ++ N+ +N +I YAKN +EEA++LF
Sbjct: 406 GFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELF 465
Query: 309 PKWMDYYIGKSEY------------------------------RNNVIVNTVLIDMYAKC 338
+ D +G S + + N V LI MY++C
Sbjct: 466 NEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC 525
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI---------------- 382
G+++ A F+ D++V+ +++ G+ HG + LFH +
Sbjct: 526 GNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVL 585
Query: 383 --------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
+HG+ PR +HYA +VD+L R+G + A +FI +MP +
Sbjct: 586 SACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKAD 645
Query: 423 LSVRRALLSAWKI 435
V R L A ++
Sbjct: 646 ALVWRTFLGACRV 658
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 118/290 (40%), Gaps = 61/290 (21%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMIVGYGLHE--WSAFGSFDG 228
++V +N+ LI +Y+KCG + A F +D++ SAM+ + + + A +F
Sbjct: 100 DSVTLNS-LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVD 158
Query: 229 LLSNE--ENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL------------- 271
++ N NEY A EF+ G + GF++K G L+SD+
Sbjct: 159 MIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY-LQSDVCVGCGLIDMFVKG 217
Query: 272 ---LISLTAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKW--------------- 311
L+S V P N W MI+ + GYA EA+ LF +
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGV 277
Query: 312 ------MDYYIGKSEYRNNVI---------VNTVLIDMYAKC---GSVDLAPMFFDRTLD 353
M+ + + + I V LI+MYAKC GS+ A FD+ LD
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337
Query: 354 KDVVMRSAMTVGYGLH-GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+V +AM GY G EE LF + + P H ++ + A
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 43/205 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF--LVCYL------------ 46
M + V PN T LKAC L +L +G +V LGF + C
Sbjct: 367 MILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGR 426
Query: 47 -------FDGLFDRTIV----FLDLY--HLWSRTEWSAFGSF-DGLLSNEENEYGTALDC 92
FD LF++ ++ +D Y +L S F D + + + L
Sbjct: 427 IDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG 486
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-----RYQ-------PNVTLR 137
+ + + +G+ +H +IK GL+L + LIS+ + C +Q NV
Sbjct: 487 AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISW 546
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMD 162
++I+G+AK+G+A +A++LF K ++
Sbjct: 547 TSIITGFAKHGFATQALELFHKMLE 571
>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 52/237 (21%)
Query: 233 EENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTA-------------V 278
+ N TA+ +C D+ L G+ +H ++ G + +S + +L A V
Sbjct: 115 QSNYTFTAVIKACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKV 174
Query: 279 CRYQPNVTL--WNAMISGYAKNGYAEEAVKLFPK-------------------------- 310
P T+ WN+MISGY +NG+++EAV LF +
Sbjct: 175 FDRMPERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGAL 234
Query: 311 ----WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
W+ YI + + NV++ T LI+MY +CG+V A FD +++VV +AM GY
Sbjct: 235 DLGCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGY 294
Query: 367 GLHGLGEEGWVLFHHIRKHGIE------PRHQHYARVVDLLARAGYSNHAFKFIMNM 417
G+HG G E LF +R HG+ PR +H+ +VD+L RAG+ N AF++I ++
Sbjct: 295 GMHGYGREAIELFRLMRIHGMRQDYGLVPRVEHHVCMVDMLGRAGFLNEAFQYIKDL 351
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 109/470 (23%), Positives = 181/470 (38%), Gaps = 140/470 (29%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAMISGY 144
GK VHG+ +K+G + SDL +S + V Y ++ N MI+GY
Sbjct: 165 GKCVHGYAVKIGFD--SDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGY 222
Query: 145 AKNGYAEEAVKLF----------------------PKWMDYYIGKSEYRN--------NV 174
A+N Y EEA++LF D +G+ + +V
Sbjct: 223 AQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDV 282
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHEWSAFGSF 226
V T L+DMY+K ++ F +++V +A+I GY L +S S
Sbjct: 283 FVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQS- 341
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY-- 281
+G+ + G CS + +G VH +K GL+ + + +++ + C +
Sbjct: 342 EGMEPDSFTFVGLFSSCSVS-STVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTD 400
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV- 330
+PN W +ISG+A+NG E+A+ F K + E+ ++ ++ V
Sbjct: 401 SALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVS 460
Query: 331 -----------------------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
+IDMY+KCG V+ A F +K+VV ++
Sbjct: 461 SWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNS 520
Query: 362 MTVGYGLHGLGEEGWVLFHH------------------------------------IRKH 385
M GY +G +E +LF + +
Sbjct: 521 MITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNY 580
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GI P +H +VDLL RAGY A F+++ + +LLSA +
Sbjct: 581 GIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGSLLSACGV 630
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 135/317 (42%), Gaps = 66/317 (20%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+PN +A IS A++ A L I K + N + V++ LI MY+K +
Sbjct: 38 EPNAITYSATISACAQSTRPSLATSLHC-----LILKKGFSNQLFVSSGLISMYSKHDRI 92
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEEN--------EYGT 239
A FD ++D V ++MI GY GL+E A G F ++++ EN T
Sbjct: 93 KEARFLFDDMPERDDVSWNSMIAGYSQRGLNE-EACGLFCSMINSCENWKLLVSDFTLAT 151
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------Q 282
L L GK VHG+ +K+G +SDL +S + V Y
Sbjct: 152 VLKACGGLGCSRIGKCVHGYAVKIG--FDSDLFVSGSTVYMYCKCGILDMAGLAFDQIEN 209
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKSE 320
++ WN MI+GYA+N Y EEA++LF D +G+
Sbjct: 210 KDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCF 269
Query: 321 YRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ +V V T L+DMY+K ++ F +++V +A+ GY L G
Sbjct: 270 HAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKY 329
Query: 373 EEGWVLFHHIRKHGIEP 389
EE ++ ++ G+EP
Sbjct: 330 EEALRVYSQLQSEGMEP 346
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 110/290 (37%), Gaps = 75/290 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTI 55
M++ PN T VLKA A+ +G H ++ LG F+ L D ++ +
Sbjct: 238 MELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVD-MYSKFY 296
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSNEE--NEYGTALD---------------------C 92
D+ + SF+ L++ +Y AL
Sbjct: 297 DIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFS 356
Query: 93 SCDL-EFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTL 136
SC + + +G VH +K GL+ + + +++ + C + +PN
Sbjct: 357 SCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVC 416
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV----------------- 179
+ISG+A+NG E+A+ F K + E+ ++ ++ V
Sbjct: 417 WAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVM 476
Query: 180 -------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
+IDMY+KCG V+ A F +K+VV ++MI GY
Sbjct: 477 KSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYA 526
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 138/593 (23%), Positives = 231/593 (38%), Gaps = 165/593 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG----------FLVCYLFDG------ 49
V+P+ T P ++KACVAL + + + SLG + YL G
Sbjct: 130 VSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAG 189
Query: 50 -LFDRTI--------VFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCS---CDLE 97
LFDR + V L+ Y ++ S F + ++ + DC C +
Sbjct: 190 KLFDRVLQKDCVIWNVMLNGYAKCGASD-SVIKGFSLMRMDQISPNAVTFDCVLSVCASK 248
Query: 98 FL-EQGKIVHGFMIKLGLELESDL---LISLTAVC-RYQPNVTLR-----------NAMI 141
L + G +HG ++ GL+ E + L+S+ + C R+ + L N MI
Sbjct: 249 LLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMI 308
Query: 142 SGYAKNGYAEEAVKLF---------PKWMDY---------------------YIGKSEYR 171
SGY ++G EE++ F P + + YI +
Sbjct: 309 SGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSIS 368
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL-- 229
++ + + LID Y KC V +A F + DVV+ +AMI GY LH + +
Sbjct: 369 LDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGY-LHNGLNIDALEMFRW 427
Query: 230 -----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-- 279
+S E + L L L+ G+ +HGF+IK G + ++ +I + A C
Sbjct: 428 LVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 487
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+ ++ WN+MI+ A++ A+ +F
Sbjct: 488 MNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSA 547
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K + ++ K +V + LIDMYAKCG++ A FD +K++V
Sbjct: 548 CANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSW 607
Query: 360 SAMTVGYGLHGLGEEGWVLFHHI------------------------------------- 382
+++ YG HG ++ LFH +
Sbjct: 608 NSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMT 667
Query: 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +GI+P+ +HYA VVDL RAG + A++ + +MP V LL A ++
Sbjct: 668 QDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRL 720
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 125/572 (21%), Positives = 212/572 (37%), Gaps = 160/572 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFD----------GLFDRTIVF 57
P+ P V KAC AL G VHG + GF C G+ D
Sbjct: 151 PDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKV 210
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENE--------------------YGTALDCSCDLE 97
D + W+A G + N NE T L S ++
Sbjct: 211 FDEIPERNVVAWNAL--MVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMG 268
Query: 98 FLEQGKIVHGFMIKLGLELESDLLIS-LTAVCRY--------------QPNVTLRNAMIS 142
+E+GK H + GLEL++ L S L C+ + +V N +IS
Sbjct: 269 GIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVVTWNLLIS 328
Query: 143 GYAKNGYAEEAVKL------------------------------FPKWMDYYIGKSEYRN 172
GY + G E+A+++ K + Y + +
Sbjct: 329 GYVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLES 388
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
++++ + +DMYAKCGS+ A FD T+ KD+++ + ++ Y E G L
Sbjct: 389 DIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYA--ESGLSGEALRLFYE 446
Query: 233 EENEYGTALDCSCDL---EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+ E + +L L G++ ++ L+++S +I PN+ W
Sbjct: 447 MQLESVPPNVITWNLIILSLLRNGQVNEA--KEMFLQMQSSGII---------PNLVSWT 495
Query: 290 AMISGYAKNGYAEEAVKLFPKWMD-------------------------------YYIGK 318
M++G +NG +EEA+ K + Y I
Sbjct: 496 TMMNGLVQNGCSEEAILFLRKMQESGLRPNVFSITVALSACANLASLHYGRSIHGYIIRN 555
Query: 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVL 378
+ ++V + T L+DMYAKCG ++ A F L ++ + +AM G+ ++G +E L
Sbjct: 556 QRHCSSVSIETSLVDMYAKCGDINKAERVFRSKLYSELPLYNAMISGFAVYGNVKEAIGL 615
Query: 379 FHH------------------------------------IRKHGIEPRHQHYARVVDLLA 402
+ + KHG++P +HY +VDLLA
Sbjct: 616 YRSLEDMGIKPDSITFTSLLSACNHAGDINQAFEIFTDMVSKHGLKPCLEHYGLMVDLLA 675
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
AG ++ A + + MP + + ++L + K
Sbjct: 676 SAGETDKALRLMEEMPYKPDARMVQSLFATCK 707
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 114/266 (42%), Gaps = 53/266 (19%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSF 226
Y N + T L+ YAKC ++++A + F + ++V +A+I GL E + G F
Sbjct: 83 YARNEYIETKLVIFYAKCDALEIAELLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMG-F 141
Query: 227 DGLLSN---EENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC 279
+L N +N + +C L++ G+ VHG+++K G + L + C
Sbjct: 142 VEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKC 201
Query: 280 RY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
+ NV WNA++ GY +NG EEA++LF +
Sbjct: 202 GVLDEARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCL 261
Query: 317 -----------GKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
GK + V I+ T +++ Y K G ++ A M FDR ++KDVV
Sbjct: 262 SASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVV 321
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ + GY GL E+ + +R
Sbjct: 322 TWNLLISGYVQQGLVEDAIRMCQSMR 347
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 190/456 (41%), Gaps = 107/456 (23%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------ 130
+G+ L LE+GK +H IK + + + L+ + A C+
Sbjct: 141 WGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAP 200
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLF---------------PKWMDYY---------- 164
+ N L AM++GY++NG +A++ F P +
Sbjct: 201 DKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGA 260
Query: 165 -----IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YG 216
I +S + NV V + L+DMY+KCG + A + D V ++MIVG G
Sbjct: 261 QVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQG 320
Query: 217 LHEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LES 269
L E A F + + +E Y + L+C + + VH ++K G E L +
Sbjct: 321 LGE-EALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVN 379
Query: 270 DLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
+ L+ + A Y +V W ++++G NG EEA++LF
Sbjct: 380 NALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 439
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
K + KS +++ V+ L+ MYAKCG ++ A
Sbjct: 440 PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 499
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--------HGIEPRHQHYARVVD 399
FD +DV+ +A+ VGY +G G + L H R +GI+P +HYA ++D
Sbjct: 500 FDSMEIQDVITWTALIVGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMID 559
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LL R+G A + + M ++ +V +ALL+A ++
Sbjct: 560 LLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRV 595
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 115/298 (38%), Gaps = 88/298 (29%)
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHE------------- 219
N VL ++ +KCG VD A FD D+D + MI Y L+E
Sbjct: 45 NWVLSNL-SKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103
Query: 220 --WSAFGS-------------------FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 258
WS+ S ++G N+ +G+ L LE+GK +H
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFT-WGSVLRVCSMYVLLEKGKQIHA 162
Query: 259 FMIKLGLELESDL---LISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAE 302
IK + + + L+ + A C+ + N LW AM++GY++NG
Sbjct: 163 HAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGH 222
Query: 303 EAVKL---------------FPKWMDY---------------YIGKSEYRNNVIVNTVLI 332
+A++ FP + I +S + NV V + L+
Sbjct: 223 KAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALV 282
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH--HIRKHGIE 388
DMY+KCG + A + D V ++M VG GLGEE LF H+R I+
Sbjct: 283 DMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKID 340
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/379 (21%), Positives = 143/379 (37%), Gaps = 86/379 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGL 50
M+ + N T P +L AC ++ + G +VHG I GF + Y G
Sbjct: 231 MRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGD 290
Query: 51 FDRTIVFLDLYHLWSRTEWSAF--GSFDGLLSNE----------------ENEYGTALDC 92
L+ + W++ G L E E Y + L+C
Sbjct: 291 LSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNC 350
Query: 93 SCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLR 137
+ + VH ++K G E L ++ L+ + A Y +V
Sbjct: 351 FSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISW 410
Query: 138 NAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGK 167
++++G NG EEA++LF K + K
Sbjct: 411 TSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLK 470
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
S +++ V+ L+ MYAKCG ++ A FD +DV+ +A+IVGY + G
Sbjct: 471 SGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYA---QNGRGRDH 527
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL----GLELESDLLISLTAVCRYQP 283
L Y +++ ++ ++ G + MI L G +E+ L++ AV QP
Sbjct: 528 AGLVEHGRSYFQSME---EVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAV---QP 581
Query: 284 NVTLWNAMISGYAKNGYAE 302
+ T+W A+++ +G E
Sbjct: 582 DATVWKALLAACRVHGNVE 600
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 143/595 (24%), Positives = 220/595 (36%), Gaps = 175/595 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL---------------------VCYL 46
PN V++AC L +L ++HG + GF+ +
Sbjct: 152 PNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLI 211
Query: 47 FDGLFDRTIV----FLDLYHLWSRTEWSA--FGSF-DGLLSNEENEYGTALDCSCDLEFL 99
FDGL +T V + Y R+E S F +G + + + L LEFL
Sbjct: 212 FDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFL 271
Query: 100 EQGKIVHGFMIKLGLELESDL---LISLTAVCR------------YQPNVTLRNAMISGY 144
E GK +HG++++ G +++ + +I C +V MI+G
Sbjct: 272 EGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGC 331
Query: 145 AKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNV 174
+N + +A+ LF + + Y K N+
Sbjct: 332 MQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDD 391
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
V LIDMYAKC S+ A FD +VV +AMI GY D L+ +
Sbjct: 392 FVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQ--------DKLVEALD 443
Query: 235 --NEYGTALDCSCDLEFLEQGKI------------VHGFMIKLGLELES---DLLISLTA 277
E +L L F+ + +H +IK G+ L+S LI + +
Sbjct: 444 LFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYS 503
Query: 278 VCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY---- 321
C Y ++ +WNAM SGY++ EE++KL+ + +E+
Sbjct: 504 KCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAA 563
Query: 322 -----------------RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
N VI V L+DMYAKCGS++ + F T +D
Sbjct: 564 VIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRD 623
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLF--------------------------------HH-- 381
+ ++M Y HG + +F HH
Sbjct: 624 IACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFE 683
Query: 382 -IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ K GIEP HYA +V LL RAG A +F+ MPI+ V R+LLSA ++
Sbjct: 684 SMSKFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRV 738
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 132/333 (39%), Gaps = 82/333 (24%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWM--------DY--------------------- 163
N+ ++M+S Y ++GY+ EA+ LF ++M +Y
Sbjct: 117 NLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQL 176
Query: 164 --YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLH 218
++ K + +V V T LID YAK G VD A + FD K V +A+I GY G
Sbjct: 177 HGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRS 236
Query: 219 EWS--AFGSF-DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---L 272
E S F +G + + + L LEFLE GK +HG++++ G +++ + +
Sbjct: 237 EVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGI 296
Query: 273 ISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF------------ 308
I C +V W MI+G +N + +A+ LF
Sbjct: 297 IDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDA 356
Query: 309 ------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+ + Y K N+ V LIDMYAKC S+ A FD
Sbjct: 357 FGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDL 416
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+VV +AM GY E LF +R
Sbjct: 417 VAAINVVSYNAMIEGYSRQDKLVEALDLFREMR 449
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 106/272 (38%), Gaps = 52/272 (19%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FG 224
++++V + L+ Y+K A FD +++V S+M+ Y H +S F
Sbjct: 83 HQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFC 142
Query: 225 SFDGLLSNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC 279
F S + NEY + + L L Q +HGF++K G + LI A
Sbjct: 143 RFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKR 202
Query: 280 RYQPNVTL------------WNAMISGYAKNGYAEEAVKLFP------------------ 309
Y L W A+I+GYAK G +E ++KLF
Sbjct: 203 GYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVL 262
Query: 310 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
K + Y+ + + +V V +ID Y KC V F+R +DKDVV
Sbjct: 263 SACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVV 322
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ M G + + LF + + G +P
Sbjct: 323 SWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKP 354
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 147/368 (39%), Gaps = 93/368 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
Q N NAMISG + EEA +LF + R NVI T ++D YAK G +
Sbjct: 137 QRNTASWNAMISGLVRYDRVEEASRLF---------EEMPRRNVISYTAMVDGYAKIGEI 187
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
+ A F+ K+VV + MI GY + G FD E + D +
Sbjct: 188 EQARALFNCMPQKNVVSWTVMISGYVEN-----GKFD--------EAENLFEQMPDKNIV 234
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G+ K G ++ +L CR ++ WNAMI+GYA+NG EEA+KL +
Sbjct: 235 AMTAMITGY-CKEGKTDKAKILFDQIP-CR---DLASWNAMITGYAQNGSGEEALKLHSQ 289
Query: 311 WMD------------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+ + KS Y + + + LI MY KCGS
Sbjct: 290 MLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGS 349
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------- 389
+ + + F + DVV +AM + HG + F +R + +EP
Sbjct: 350 ILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 409
Query: 390 -------------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
R +H+A +VD+L+R G A+K I MP E
Sbjct: 410 CGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCG 469
Query: 425 VRRALLSA 432
+ ALL+A
Sbjct: 470 IWGALLAA 477
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 126/306 (41%), Gaps = 53/306 (17%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC---GSVDLAP 194
N++I+GY KNG +E+ +LF G +N V N+ M A C +D A
Sbjct: 82 NSIITGYWKNGCFDESKRLF--------GLMPTKNVVSWNS----MIAGCIEDERIDEAW 129
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQ 252
+F ++ +AMI G ++ S F+ + Y +D + +EQ
Sbjct: 130 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 189
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ + C Q NV W MISGY +NG +EA LF +
Sbjct: 190 ARALFN--------------------CMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP 229
Query: 313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
D N++ T +I Y K G D A + FD+ +D+ +AM GY +G G
Sbjct: 230 D---------KNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSG 280
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVRR 427
EE L + K G++P H V+ + + G H ++ E R+S+
Sbjct: 281 EEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHV--LVLKSGYESRISICN 338
Query: 428 ALLSAW 433
AL++ +
Sbjct: 339 ALITMY 344
>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 141/599 (23%), Positives = 224/599 (37%), Gaps = 169/599 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV---------CYLFD--G 49
M+ + PN T P+V+ C L G +HG LG V Y++ G
Sbjct: 99 MRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCG 158
Query: 50 LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDC----------------- 92
+ + + W+A G + N NE G L C
Sbjct: 159 HVESASIMFSEITVKDVVTWTAL--IVGYVQN--NESGRGLKCLFEMHRIGGTPNYKTIG 214
Query: 93 ----SC-DLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRY------------QP 132
+C DL+ L +GK +HG +K G E+ ++S+ + C Q
Sbjct: 215 SGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQK 274
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKSEY 170
++ ++I+ ++K G E + LF + I GK+ +
Sbjct: 275 DLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFH 334
Query: 171 RN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE 219
+ I + L+ MY K G + A F + K S MI+GY G E
Sbjct: 335 ARILKQCCALSGITHNALLSMYCKFGHLGTANKIF-HSFHKSSEDWSTMILGYSNMGQKE 393
Query: 220 WSAFGSFDGLLSNEE---NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL- 275
+ LL E N + + + + G+ +H + IK + + SL
Sbjct: 394 KCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLM 453
Query: 276 ---------TAVCR-----YQPNVTLWNAMISGYAKNGYAEEAVKLFPKW---------- 311
TA R Q +V WN +IS Y ++G EA+ LF K
Sbjct: 454 DMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKV 513
Query: 312 --------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ YI ++ + +N+ + T LIDMYAKCG ++ + F+ T
Sbjct: 514 TCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFNST 573
Query: 352 LDKDVVMRSAMTVGYGLHGLGE-----------------------------------EGW 376
++DV++ + M YG+HG E EG
Sbjct: 574 EERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEGR 633
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LF ++K+GIEP +HYA ++DLL R+G A +++MPI +V +LLSA KI
Sbjct: 634 HLFDRMQKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWGSLLSACKI 692
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 139/594 (23%), Positives = 217/594 (36%), Gaps = 186/594 (31%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLG----------FLVCYLFDGLF-DRTIVFLDLYHLW 64
+L+ C L G + H Q+ G L Y+ G F D +F L LW
Sbjct: 52 ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQL-RLW 110
Query: 65 SRTEW-------SAFGSFD------------GLLSNEENEYGTALDCSCDLEFLEQGKIV 105
W + G FD G L ++ + + L + G++V
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYT-FPYVIKACGGLNSVALGRVV 169
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLR-----------------NAMISGYAKNG 148
H + +G EL D+ + + + Y N + N M++GY KNG
Sbjct: 170 HDKIQFMGFEL--DVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227
Query: 149 YAEEAVKLF---------PKWMDYYIGKSEYRNNVIVNT--------------------- 178
+ A +F P + + S + +++N
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287
Query: 179 --VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSNEE 234
LID+Y KC V++A FD+ D+V+ +AMI GY L+ +A F LL
Sbjct: 288 TFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 347
Query: 235 N----EYGTALDCSCDLEFLEQGKIVHGFMIKLG--------------------LELESD 270
+ L L L GK +HG ++K G L+L
Sbjct: 348 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 407
Query: 271 LLISLT---AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------ 309
I ++ AVC WN+MI+ ++NG EEA+ LF
Sbjct: 408 TFIGISDKDAVC--------WNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAAL 459
Query: 310 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
K + ++ + +R+++ + LIDMY+KCG++DLA FD +K+ V
Sbjct: 460 SACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEV 519
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------------- 391
+++ YG HG ++ LFH + GI+P H
Sbjct: 520 SWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCM 579
Query: 392 ----------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VDL RAG N AF I +MP V LL A ++
Sbjct: 580 TEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRL 633
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 146/329 (44%), Gaps = 77/329 (23%)
Query: 138 NAMISGYAKNGYAEEAVKLF---------PKWMDYYI----------GKSEYRNNV---- 174
+MIS YA NG+ +EA+ L+ P + + GK+ + V
Sbjct: 216 TSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNM 275
Query: 175 ---IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSA---FGSF 226
V + LI+MYA+CG V A F++ +K VV ++++ Y H A +G
Sbjct: 276 ESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRM 335
Query: 227 DGLLSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVC---- 279
D + + Y TAL L L++GK +H + + G + + L+++ A C
Sbjct: 336 DHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELD 395
Query: 280 ---------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-------DY--------- 314
R + NV W AMIS YA+ G+ +EA++L+ + + +Y
Sbjct: 396 AARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAAC 455
Query: 315 --------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
++ SE +NV V L+ MYAKCGS++LA F+ + KD+V +
Sbjct: 456 SSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWN 515
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
AM Y HGLG E L+ + G+ P
Sbjct: 516 AMIGAYAQHGLGREALDLYQTMTSQGVLP 544
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/404 (24%), Positives = 162/404 (40%), Gaps = 106/404 (26%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVC-------------RY 130
Y TAL L L++GK +H + + G + + L+++ A C R
Sbjct: 347 YVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVFNRVRQ 406
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM-------DY-------------------- 163
+ NV AMIS YA+ G+ +EA++L+ + + +Y
Sbjct: 407 KRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMK 466
Query: 164 ---YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
++ SE +NV V L+ MYAKCGS++LA F+ + KD+V +AMI Y H
Sbjct: 467 IHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGL 526
Query: 221 --SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
A + + S +E ++L L+ G+ +H ++K S L++
Sbjct: 527 GREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLK-NQSFRSSLMVQ 585
Query: 275 LTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
V Y Q +V W AM S YA+ G+A++ + L+ + + + I
Sbjct: 586 TALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGI- 644
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
R N I T ++ VG GL G
Sbjct: 645 ----RPNEITFTSIL-------------------------------VGCSHAGLLARGVE 669
Query: 378 LFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
F ++ +H + P +H+ +VDLL R+G A + +MP +
Sbjct: 670 CFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQ 713
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/438 (21%), Positives = 174/438 (39%), Gaps = 108/438 (24%)
Query: 99 LEQGKIVHGFMIKLGL---ELESDLLISLTAVC--------RYQPNVTLR-----NAMIS 142
L +GK+VH +++ G + +LLI + C +Q +++ N M+S
Sbjct: 58 LAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLS 117
Query: 143 GYAKNGYAEEAVKLF---------PKWMDYYI-----------------------GKSEY 170
Y KNG A++L+ P + Y+I
Sbjct: 118 AYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQII 177
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG------ 224
R+N+ + L++MY KCGSV+ A FD ++D V ++MI Y + +
Sbjct: 178 RDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQ 237
Query: 225 -SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE--SDLLISLTAVCR- 280
DG+ + L C+ L GK +H ++ +E + LI++ A C
Sbjct: 238 MDADGIQPDSITFTSALLACT----KLVDGKAIHARIVSSNMESDFVGSALINMYARCGD 293
Query: 281 -----------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------YI---- 316
+V W ++++ Y + + EA+ L+ + MD+ Y+
Sbjct: 294 VSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGR-MDHEGVHADGVTYVTALG 352
Query: 317 ----------GKSEYR-------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVM 358
GK+ + +++V+T L+ MYAKCG +D A F+R K +V
Sbjct: 353 ACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYC 412
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKF---IM 415
+AM Y G +E L+ + G P ++ V+ + +G K +
Sbjct: 413 WTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVE 472
Query: 416 NMPIELRLSVRRALLSAW 433
N + ++V+ AL++ +
Sbjct: 473 NSELASNVAVQNALVTMY 490
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 108/463 (23%), Positives = 193/463 (41%), Gaps = 133/463 (28%)
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLF 157
FLE +V F ++L +EL S+ L + ++ NV NA+ISG+ NG+ EE + +
Sbjct: 71 FLE--TLVSSF-VQLEIELPSNTLKAGENDPTHEINVFAFNAIISGFITNGFPEEGFEFY 127
Query: 158 PKWMDYYIGKSEY---------------------------RNNVIVNTVLIDMYAKCGSV 190
K + + ++ +V + + L++ Y K G +
Sbjct: 128 QKMRNEGVMPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLM 187
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS-----NEENEYGTALDCSC 245
+ A + F+ +DVV+ +AM+ GY + G F+ +L N+E+ + +
Sbjct: 188 EHAQVAFEELPIRDVVLWNAMVNGY-----AQIGQFEMVLETFRRMNDESVVPSRFTVTG 242
Query: 246 DLEF------LEQGKIVHGFMIKLGLE---LESDLLISLTAVCR------------YQPN 284
L L G+I+HGF +K+G + S+ LI + C+ + +
Sbjct: 243 XLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKD 302
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI---------------------------- 316
+ WN+++S + + G + ++L + + I
Sbjct: 303 IFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHG 362
Query: 317 -------GK-SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
GK + ++V++ +IDMYAKCGS+ A + F+R +KDV + M +GYG+
Sbjct: 363 YMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGM 422
Query: 369 HGLGEEGWVLFHHI------------------------------------RKHGIEPRHQ 392
HG G E +F + K+ + P +
Sbjct: 423 HGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIE 482
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HY V+D+L RAG + A++ + MPIE V RALL+A ++
Sbjct: 483 HYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRL 525
>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 662
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 145/335 (43%), Gaps = 84/335 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWM------DYYIGKSEYR-------------------- 171
N+MIS + G +EA++L+ + D Y + ++
Sbjct: 70 NSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVV 129
Query: 172 -----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG 224
++ V T ++DMYAK G + A FDR LDKDVV+ +A+IVGY H + A
Sbjct: 130 LGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALE 189
Query: 225 SFDGLLSN--EENEYGTA-LDCSC-DLEFLEQGKIVHGFMIKLGLE---LESDLLISLTA 277
F+ ++ + + NEY A + SC +L L GK++HG ++K GLE L+++ +
Sbjct: 190 VFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYS 249
Query: 278 VCR-------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-- 322
C Y +VT W + I G +NG E A+ +F + M I + +
Sbjct: 250 KCNMVEDSIKVFNSLAYASHVT-WTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLS 308
Query: 323 ----------------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
N V+ LI +Y KCG+V+ A FD +
Sbjct: 309 SILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTEL 368
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
D+V + M Y +G G E LF ++K G+EP
Sbjct: 369 DIVSINTMIYAYAQNGFGHEALELFERLKKLGLEP 403
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 33/149 (22%)
Query: 283 PN--VTLWNAMISGYAKNGYAEEAVKLFPKWM------DYYIGKSEYR------------ 322
PN + WN+MIS + G +EA++L+ + D Y + ++
Sbjct: 62 PNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQ 121
Query: 323 -------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
++ V T ++DMYAK G + A FDR LDKDVV+ +A+ VGY H
Sbjct: 122 KAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQH 181
Query: 370 GLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
GL E +F + I+P A V+
Sbjct: 182 GLDGEALEVFEDMVGSRIKPNEYTLASVL 210
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 96/445 (21%), Positives = 161/445 (36%), Gaps = 135/445 (30%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVC--------------------- 44
V P+ T + KA + G + HG LGF V
Sbjct: 97 VLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDA 156
Query: 45 -YLFDGLFDRTIV-FLDLYHLWSR--TEWSAFGSFDGLLSN--EENEYGTA-LDCSC-DL 96
++FD + D+ +V F L +++ + A F+ ++ + + NEY A + SC +L
Sbjct: 157 RFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNL 216
Query: 97 EFLEQGKIVHGFMIKLGLEL----ESDLLISLTAVCRYQPNVTLRNAM-----------I 141
L GK++HG ++K GLE ++ LL + + ++ + N++ I
Sbjct: 217 GDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFI 276
Query: 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------------------ 171
G +NG E A+ +F + M I + +
Sbjct: 277 VGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVD 336
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
N V+ LI +Y KCG+V+ A FD + D+V + MI Y
Sbjct: 337 GNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYA--------------- 381
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
+N +G LE E+ K KLGLE PNV + ++
Sbjct: 382 --QNGFGHEA-----LELFERLK-------KLGLE----------------PNVVTFISI 411
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN------TVLIDMYAKCGSVDLAP 345
+ G EE ++F S RNN + T +ID+ + + A
Sbjct: 412 LLACNNAGLVEEGCQIF----------SLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAT 461
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG 370
M + + DV+ + +HG
Sbjct: 462 MLIEEGKNPDVIQWRTLLNACKIHG 486
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 99/266 (37%), Gaps = 56/266 (21%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-------EWSAFGSFDGLLSN 232
LID Y KC + A FD ++ +V ++MI + E + F+G+L +
Sbjct: 41 LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPD 100
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY----------- 281
+ ++ +G+ HG + LG E+ SD ++ V Y
Sbjct: 101 AYT-FSAIFKAFSEMGVSREGQKAHGLAVVLGFEV-SDGFVATGIVDMYAKFGKMKDARF 158
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------- 321
+V L+ A+I GY ++G EA+++F + I +EY
Sbjct: 159 VFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGD 218
Query: 322 ----------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ V T L+ MY+KC V+ + F+ V ++ VG
Sbjct: 219 LVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVG 278
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRH 391
+G E +F + + I P H
Sbjct: 279 LVQNGREEVALSMFREMMRCSISPNH 304
>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
[Cucumis sativus]
Length = 1830
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 116/485 (23%), Positives = 189/485 (38%), Gaps = 104/485 (21%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
++LKAC L ++ G +VH QI +G ++ GL +D+Y + E S+
Sbjct: 1223 IILKACSELREIVEGRKVHCQIVKVGGPDSFVMTGL-------IDMYGKCGQVECSS-AV 1274
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 134
F+ ++ + + + E+G ++ M D L+
Sbjct: 1275 FEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRM--------RDALVE----------- 1315
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
N G N + + KW+ Y K+ + + T +DMY KCG A
Sbjct: 1316 --SNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTRDAR 1373
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE-FLEQG 253
M +D D+V + MIVGY A DGL + L S L+ F ++
Sbjct: 1374 MIYDELPTIDLVSWTVMIVGYT----QARQPNDGLRLFADEIRSDLLPNSALLQVFFQRV 1429
Query: 254 KIVHGFM-IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ ++ + + SD V + +V WN+MISGYA+NG A +A++LF +
Sbjct: 1430 RFLNALIDMYAKCHTISDAYAIFHGVL--EKDVITWNSMISGYAQNGSAYDALRLFNQMR 1487
Query: 313 DYYIGKSE-------------------------------YRNNVIVNTVLIDMYAKCGSV 341
Y + + +N+ + T L++ YAKCG
Sbjct: 1488 SYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCGDA 1547
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------- 391
A M FD K+++ SAM GYG+ G G +F ++ K ++P
Sbjct: 1548 RSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLSAC 1607
Query: 392 --------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
+HYA +VDLLAR+G + A FI MP++ +S+
Sbjct: 1608 SYSGMVEEGGRYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRDVSL 1667
Query: 426 RRALL 430
A L
Sbjct: 1668 YGAFL 1672
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 125/523 (23%), Positives = 207/523 (39%), Gaps = 127/523 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQI----FSLGFLVCYLFDGLFDRTIVFLDLY 61
V P+ T ++KAC +L + +G ++H + F + ++ ++ V +D
Sbjct: 160 VMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDAL 219
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELESDL 120
++SR S+ +++ ++ G L+ C E L QG
Sbjct: 220 DVFSRMATRDLISWGSMIAGF-SQLGYELEALCYFKEMLHQGV----------------- 261
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
Y PN + ++ S + E +L + + +G+ +V L
Sbjct: 262 ---------YLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGR-----DVFAGCSL 307
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHEWSAFGS---FDGLLSNE 233
DMYAKCG + A + F + D+V +A+I G+ E AF S GL+ +E
Sbjct: 308 CDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDE 367
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC----------- 279
C+ E L QG VHG++ K+GL+L+ + L+++ A C
Sbjct: 368 ITVRSLLCACTSPSE-LYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFE 426
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-------------- 314
R ++ WNA+++ + AEE L P ++
Sbjct: 427 EMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIE 486
Query: 315 -------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
Y K+ ++ V LID+YAKCGS+ A FD ++ DVV S++ +GY
Sbjct: 487 IGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYA 546
Query: 368 LHGLGEEGWVLFHHIRKHGIEPRH------------------------------------ 391
G GEE LF +R+ ++P H
Sbjct: 547 QFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTR 606
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+H + +VDLLARAG N A FI M + + V + LL+A K
Sbjct: 607 EHCSCMVDLLARAGCLNEAEAFIHQMAFDPDIVVWKTLLAACK 649
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 113/275 (41%), Gaps = 52/275 (18%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA---- 222
KS+ ++ + +++MY KCGS+ A FD +++VV +++I GY +
Sbjct: 91 KSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALE 150
Query: 223 --FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-------------LGLEL 267
F + ++ +G+ + L + G+ +H ++K + +
Sbjct: 151 FYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYT 210
Query: 268 ESDLLISLTAVCRYQPNVTL--WNAMISGYAKNGYAEEAVKLFPKWM--------DYYIG 317
+S+++I V L W +MI+G+++ GY EA+ F + + ++ G
Sbjct: 211 KSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFG 270
Query: 318 ----------KSEYRN-------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
+ EY +V L DMYAKCG + A + F +
Sbjct: 271 SVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRP 330
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
D+V +A+ G+ G +E F +R G+ P
Sbjct: 331 DLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIP 365
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS+ ++ + +++MY KCGS+ A FD +++VV +++ GY +G G
Sbjct: 91 KSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALE 150
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAG 405
+ + + G+ P + ++ + G
Sbjct: 151 FYFQMLQSGVMPDQFTFGSIIKACSSLG 178
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 146/331 (44%), Gaps = 52/331 (15%)
Query: 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207
G+ + + ++ K +NV + LI+MY+ CG +D+A FD + DVV
Sbjct: 123 GFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVT 182
Query: 208 RSAMIVGYG-----LHEWSAF--GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
+AMI GY + W+A G + + +Y + + + + ++ G++
Sbjct: 183 WNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMP---ERDHVSWTAMIDGYL 239
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
+L E+ +L + +P+ ++++ A+ G E +W+ YI K++
Sbjct: 240 -RLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALE-----LGEWIRTYIDKNK 293
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+N+ V LIDMY KCG+V++A F+ +D +AM VG ++G GEE +F
Sbjct: 294 VKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFS 353
Query: 381 HIRK------------------------------------HGIEPRHQHYARVVDLLARA 404
+ K HGIEP HY +VDLL +A
Sbjct: 354 QMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKA 413
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G+ A + I NMP++ V ALL A +I
Sbjct: 414 GHLKEAHEIIKNMPMKPNSIVWGALLGACRI 444
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 163/413 (39%), Gaps = 119/413 (28%)
Query: 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------NN------------ 173
MISGYA A EA+ LF G++E+ NN
Sbjct: 180 MISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG 239
Query: 174 ----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-----AFG 224
V V L+ MYAKCGS+D A F+ + DK+ + SAMI GY S F
Sbjct: 240 LLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFS 299
Query: 225 S--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC 279
S G+ +E G CS DL +GK VH +++KLG E + L+ + A C
Sbjct: 300 SMHLSGIRPSEFTFVGVINACS-DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKC 358
Query: 280 R------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------ 309
+P++ LW +MI GY +NG E+A+ L+
Sbjct: 359 SSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVL 418
Query: 310 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
K + K + V + + L MYAKCG + + F R +DV+
Sbjct: 419 KACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVI 478
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIR---------------------------------- 383
+AM G +G G+E LF ++
Sbjct: 479 SWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMM 538
Query: 384 --KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ G++PR +HYA +VD+L+RAG A +F + I+ + + R +L A +
Sbjct: 539 FDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACR 591
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 133/313 (42%), Gaps = 60/313 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V V + L++MY K G A FD +++ V + MI GY + + A G F +
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMR 201
Query: 231 SNEENE----YGTALDCSCDLEFLEQGKIVHGFMIKLG-LELES--DLLISLTAVC---- 279
EE E + + L E + GK +H +K G L + S + L+++ A C
Sbjct: 202 REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261
Query: 280 --------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
N W+AMI+GYA++G +++A+KLF
Sbjct: 262 DALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
K + Y+ K + + + V T L+DMYAKC S+ A FD + D+V+ ++
Sbjct: 322 DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTS 381
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHA----FK 412
M GY +G E+ L+ + GI P A V+ + G HA +
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441
Query: 413 FIMNMPIELRLSV 425
F + +PI LS
Sbjct: 442 FGLEVPIGSALST 454
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 122/313 (38%), Gaps = 56/313 (17%)
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
V + L+++YAKC + A F+R +KDVV + +I GY H S L
Sbjct: 40 VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM 99
Query: 234 ENE--------YGTALDCSCDLEFLEQGKIVHGFMIKL----GLELESDLL-----ISLT 276
E + + L G++ H IK+ + + S L+ LT
Sbjct: 100 RAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLT 159
Query: 277 AVCRY------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------- 321
R + N W MISGYA A EA+ LF G++E+
Sbjct: 160 PEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL 219
Query: 322 -----RNN----------------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
NN V V L+ MYAKCGS+D A F+ + DK+ + S
Sbjct: 220 TLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWS 279
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYS---NHAFKFIMNM 417
AM GY G ++ LF + GI P + V++ + G + +++ +
Sbjct: 280 AMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKL 339
Query: 418 PIELRLSVRRALL 430
E ++ V AL+
Sbjct: 340 GFESQIYVMTALV 352
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 82/203 (40%), Gaps = 45/203 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFD---RTIV 56
M ++ + P+ T V+ AC L + G +VH + LGF Y+ L D +
Sbjct: 301 MHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSS 360
Query: 57 FLDLYH-----------LWS------------RTEWSAFG--SFDGLLSNEENEYGTALD 91
+D LW+ S +G +G+L NE
Sbjct: 361 IVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKA 420
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISL-------------TAVCRYQP--NVTL 136
CS L LEQGK +H +K G LE + +L T V R P +V
Sbjct: 421 CS-SLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVIS 479
Query: 137 RNAMISGYAKNGYAEEAVKLFPK 159
NAMISG ++NG +EA++LF +
Sbjct: 480 WNAMISGLSQNGCGKEALELFEE 502
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 135/314 (42%), Gaps = 88/314 (28%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN 232
I+N L YA G +D + F RT + V +A+I G+ L SA FD +
Sbjct: 63 ILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEK 122
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
L C + + G++ ++ G+E E D VC WN MI
Sbjct: 123 SLVSLTAMLTC-----YAKHGELDAARVLFDGME-ERD------GVC--------WNVMI 162
Query: 293 SGYAKNGYAEEAVKLFPK------------------------------WMDYYIGKSEYR 322
GY +NG EA+ LF + W+ YI + +
Sbjct: 163 DGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ 222
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE--------- 373
NV V T L+DMY+KCGS++ A + FD+ DKDVV ++M VGY +HG +
Sbjct: 223 FNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM 282
Query: 374 --------------------------EGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGY 406
EGW +F+ ++ ++GIEP+ +HY +V+LL RAG+
Sbjct: 283 CRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGH 342
Query: 407 SNHAFKFIMNMPIE 420
A++ + NM IE
Sbjct: 343 VEQAYELVKNMNIE 356
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 161/417 (38%), Gaps = 114/417 (27%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDY------------------ 163
+PN ++ NAM GY++N ++ + LF P +
Sbjct: 13 EPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINALKEGEE 72
Query: 164 ---YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLH 218
++ KS +R N V T LIDMYA G++ A F ++++V+ +AMI GY
Sbjct: 73 VHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCD 132
Query: 219 EWSAFGSFDGLLSNEEN---------EYGTALDCSCDLEFLEQ--GKIVHGFMIKLGLEL 267
+A FD L+ E + Y A D E ++ K V + L
Sbjct: 133 LVTARRLFD--LAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYA 190
Query: 268 ESDLLISLTAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
+ +++ + P NV WNA+I GY +NG E + F
Sbjct: 191 SNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLV 250
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
KW+ Y Y+ NV V L+DMYAKCG V+ A F +K
Sbjct: 251 NVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNK 310
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------- 386
D++ + + G +HG G + LF H++ G
Sbjct: 311 DLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYF 370
Query: 387 --------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I PR +HY +VDLL RAG HA FI MPIE + ALL A ++
Sbjct: 371 KSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRV 427
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 161/403 (39%), Gaps = 116/403 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------- 166
N+MISGY NG E + ++ + M Y+G
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMM--YLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277
Query: 167 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
KS + + + L+DMY+KCG +D A F++ +++VV ++MI GY + G
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY-----TRDGR 332
Query: 226 FDG---LLSNEENEYGTALDC--------SCDLE-FLEQGKIVHGFMIKLGLELE---SD 270
DG LL E E G LD +C L+ GK VH ++ +E +
Sbjct: 333 SDGAIKLLQQMEKE-GVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391
Query: 271 LLISLTAVCRYQ------------PNVTLWNAMISGYAKNGYAEEAVKLFP--------- 309
L+ + A C ++ WN MI + V P
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACV--LPACASLSALE 449
Query: 310 --KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
K + YI ++ Y ++ V L+D+Y KCG + LA + FD KD+V + M GYG
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509
Query: 368 LHGLGEEGWVLFHHIRKHG------------------------------------IEPRH 391
+HG G E F+ +R G IEP+
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HYA +VDLL+R G + A++FI +PI ++ ALL +
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCR 612
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 135/349 (38%), Gaps = 90/349 (25%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---------- 128
E Y + L L+ GK VH + + ++ L L+S A C
Sbjct: 98 ETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157
Query: 129 --RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
+ NV L N M+S YAK G +E++ LF ++++ +
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIE 197
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD-----GLLSNEENEYG 238
+ A FD+ D+DV+ ++MI GY GL E G + G+ +
Sbjct: 198 GKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTE-RGLGIYKQMMYLGIDVDLATIIS 256
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQP 283
+ C+ + L GK VH IK E S+ L+ + + C +
Sbjct: 257 VLVGCA-NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
NV W +MI+GY ++G ++ A+KL K +
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH 375
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
YI + +N+ V L+DMYAKCGS++ A F + KD++ + M
Sbjct: 376 DYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTM 424
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 35/171 (20%)
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---------- 279
E Y + L L+ GK VH + + ++ L L+S A C
Sbjct: 98 ETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+ NV LWN M+S YAK G +E++ LF ++++ +
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIE 197
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+ A FD+ D+DV+ ++M GY +GL E G ++ + GI+
Sbjct: 198 GKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248
>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 784
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 141/599 (23%), Positives = 224/599 (37%), Gaps = 169/599 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV---------CYLFD--G 49
M+ + PN T P+V+ C L G +HG LG V Y++ G
Sbjct: 129 MRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCG 188
Query: 50 LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDC----------------- 92
+ + + W+A G + N NE G L C
Sbjct: 189 HVESASIMFSEITVKDVVTWTAL--IVGYVQN--NESGRGLKCLFEMHRIGGTPNYKTIG 244
Query: 93 ----SC-DLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRY------------QP 132
+C DL+ L +GK +HG +K G E+ ++S+ + C Q
Sbjct: 245 SGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQK 304
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKSEY 170
++ ++I+ ++K G E + LF + I GK+ +
Sbjct: 305 DLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFH 364
Query: 171 RNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE 219
+ I + L+ MY K G + A F + K S MI+GY G E
Sbjct: 365 ARILKQCCALSGITHNALLSMYCKFGHLGTANKIF-HSFHKSSEDWSTMILGYSNMGQKE 423
Query: 220 WSAFGSFDGLLSNEE---NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL- 275
+ LL E N + + + + G+ +H + IK + + SL
Sbjct: 424 KCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLM 483
Query: 276 ---------TAVCR-----YQPNVTLWNAMISGYAKNGYAEEAVKLFPKW---------- 311
TA R Q +V WN +IS Y ++G EA+ LF K
Sbjct: 484 DMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKV 543
Query: 312 --------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ YI ++ + +N+ + T LIDMYAKCG ++ + F+ T
Sbjct: 544 TCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFNST 603
Query: 352 LDKDVVMRSAMTVGYGLHGLGE-----------------------------------EGW 376
++DV++ + M YG+HG E EG
Sbjct: 604 EERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEGR 663
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LF ++K+GIEP +HYA ++DLL R+G A +++MPI +V +LLSA KI
Sbjct: 664 HLFDRMQKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWGSLLSACKI 722
>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 151/352 (42%), Gaps = 93/352 (26%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD-- 227
Y +V V + ++++Y KCG +D A + FD+ + +DVV + MI G + + + D
Sbjct: 137 YGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGL-VQNGNVLEAVDMF 195
Query: 228 ------GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G+ + G C+ +L L+ G VHG ++ + L D+++ + V Y
Sbjct: 196 RRMRKEGIEGDGVLMLGLVQACA-NLGELKLGLSVHGHAVRREM-LMDDVILQTSLVDMY 253
Query: 282 -----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------- 314
+ N W A+ISG+A+NG+AE A+ L +
Sbjct: 254 AKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLV 313
Query: 315 ------------YIGKSEYRNNV-------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+GKS + V ++ T LIDMYAKCGS+ A FDR +D
Sbjct: 314 SALLACSQVGHLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRD 373
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------ 391
V++ + M YG+HG G+E LF +++ I P H
Sbjct: 374 VILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFN 433
Query: 392 ------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HYA +VDL +RAG A++ I +M E L++ ALLS
Sbjct: 434 AMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLS 485
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 98/249 (39%), Gaps = 52/249 (20%)
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LHEWSAFGSFDGLLSN-- 232
N ++I YA+ G + A FD+ + V +AMIV Y H + +++
Sbjct: 43 NGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGG 102
Query: 233 --EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------- 279
+ + + A+ S L+ LE G+ + + G + +++L C
Sbjct: 103 KPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKL 162
Query: 280 ----RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---------------------- 313
+ +V W MI+G +NG EAV +F +
Sbjct: 163 VFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGE 222
Query: 314 ---------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ + + ++VI+ T L+DMYAK G ++LA F++ K+ V A+
Sbjct: 223 LKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALIS 282
Query: 365 GYGLHGLGE 373
G+ +G E
Sbjct: 283 GFAQNGFAE 291
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 30/137 (21%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS 319
Q V WNAMI Y++ + E + L+ + + D G+
Sbjct: 68 QRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGER 127
Query: 320 EYRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+R +V V + ++++Y KCG +D A + FD+ + +DVV + M G +G
Sbjct: 128 IWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGN 187
Query: 372 GEEGWVLFHHIRKHGIE 388
E +F +RK GIE
Sbjct: 188 VLEAVDMFRRMRKEGIE 204
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 152/374 (40%), Gaps = 93/374 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ +V MI GY + G +EA LF + + NV+ T ++ YA+ G V
Sbjct: 176 EKDVVAVTNMIGGYCEEGRLDEARALFDEM---------PKRNVVTWTAMVSGYARNGKV 226
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
D+A F+ +++ V +AM++GY S E + D +
Sbjct: 227 DVARKLFEVMPERNEVSWTAMLLGY-------------THSGRMREASSLFDAMPVKPVV 273
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP- 309
+++ GF GL E D + + + N T W+AMI Y + GY EA+ LF
Sbjct: 274 VCNEMIMGF----GLNGEVDKARRVFKGMKERDNGT-WSAMIKVYERKGYELEALGLFRR 328
Query: 310 -----------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
K + + +SE+ ++ V +VLI MY KCG+
Sbjct: 329 MQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGN 388
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-------------- 386
+ A F+R KDVVM ++M GY HGLGEE +FH + G
Sbjct: 389 LVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSA 448
Query: 387 ----------------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
+EP +HYA +VDLL RA N A K + MP+E
Sbjct: 449 CSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAI 508
Query: 425 VRRALLSAWKIPMQ 438
V ALL A + M+
Sbjct: 509 VWGALLGACRTHMK 522
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 71/288 (24%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV +M+ GY +NG EA +LF W + NV+ TV++ + G VD
Sbjct: 116 NVVSWTSMVRGYVRNGDVAEAERLF--WHMPH-------KNVVSWTVMLGGLLQEGRVDD 166
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
A FD +KDVV + MI GY C+ L++
Sbjct: 167 ARKLFDMMPEKDVVAVTNMIGGY-----------------------------CEEGRLDE 197
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ + M K NV W AM+SGYA+NG + A KLF
Sbjct: 198 ARALFDEMPKR--------------------NVVTWTAMVSGYARNGKVDVARKLFEVMP 237
Query: 313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ RN V +L+ Y G + A FD K VV+ + M +G+GL+G
Sbjct: 238 E--------RNEVSWTAMLLG-YTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEV 288
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
++ +F ++ E + ++ ++ + R GY A M E
Sbjct: 289 DKARRVFKGMK----ERDNGTWSAMIKVYERKGYELEALGLFRRMQRE 332
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
V+ WNAM++ Y + EA+ LF K RN V N LI + K G +
Sbjct: 54 TVSSWNAMVAAYFEARQPREALLLFEKM--------PQRNTVSWNG-LISGHIKNGMLSE 104
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
A FD D++VV ++M GY +G E LF H+
Sbjct: 105 ARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM 143
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 162/405 (40%), Gaps = 98/405 (24%)
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK--------WMDYYIGKSEYRNNVIVN 177
A + P + + S Y Y + PK + + K+ +N++ +
Sbjct: 2 ATAPFPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQIL 61
Query: 178 TVLIDMYAK---CGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----LHEWSAF-GSFDG 228
T LI+ + S+D A F+ D+V+ ++M GY L S F + +
Sbjct: 62 TKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNY 121
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCR----- 280
L ++ + + L + +QGK +H IKLGL LI++ A C
Sbjct: 122 NLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGA 181
Query: 281 -------YQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------ 309
+P V +NA+I+GYA++ EA+ LF
Sbjct: 182 QRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALL 241
Query: 310 ------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
KW+ Y+ K+ V VNT LIDMYAKCGS+D A F+ +D SAM
Sbjct: 242 GALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMI 301
Query: 364 VGYGLHGLGEEGWVLFHHIRK------------------------------------HGI 387
V Y +HG G++ +F + + +GI
Sbjct: 302 VAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGI 361
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
P +HY +VDLL RAG + A+KFI +PI+ + R LLS+
Sbjct: 362 IPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSS 406
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 71/165 (43%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELES---DLLISLTAVCR------------YQPNVTLRNAMISG 143
+QGK +H IKLGL LI++ A C +P V NA+I+G
Sbjct: 143 FQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITG 202
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
YA++ EA+ LF KW+ Y+ K+
Sbjct: 203 YARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKY 262
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V VNT LIDMYAKCGS+D A F+ +D SAMIV Y +H
Sbjct: 263 VKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMH 307
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 151/390 (38%), Gaps = 91/390 (23%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P + + I+ A++ E+A K+ ++ S + + ++ LI +Y KCGSV
Sbjct: 49 PTPRVYHTFITACAQSKNLEDARKVHA-----HLASSRFAGDAFLDNSLIHLYCKCGSVL 103
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYG----TALDCSC 245
A FD KD+V +++I GY ++ A G G+L G + L +
Sbjct: 104 EARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163
Query: 246 DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLWNA 290
G+ +H +K + L+ + A C N WNA
Sbjct: 164 AHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNA 223
Query: 291 MISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSE 320
+ISG+A+ G E A+ F KW+ ++ KS
Sbjct: 224 LISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSR 283
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ L+DMYAK GS+ A FDR DKD+V + M + +GLG+E F
Sbjct: 284 QKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFE 343
Query: 381 HIRKHGI-----------------------------------EPRHQHYARVVDLLARAG 405
+RK GI EP H+ VV LL RAG
Sbjct: 344 EMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAG 403
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
N A FI MPIE +V ALL+A ++
Sbjct: 404 LLNFALVFIFKMPIEPTAAVWGALLAACRM 433
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 140/593 (23%), Positives = 226/593 (38%), Gaps = 166/593 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV---------------------C 44
VAP+ T P V+KAC L ++ + VH S+GF +
Sbjct: 173 VAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAK 232
Query: 45 YLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDL----E 97
YLFD L R + ++ ++ + SA G+F + ++ + C +
Sbjct: 233 YLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRG 292
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAM 140
+ G +HG +I+ G ESD ++ T + Y Q + N +
Sbjct: 293 IVRAGIQLHGLVIRSG--FESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGL 350
Query: 141 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEY 170
I+GY +NG+ +EAV LF K + YI +
Sbjct: 351 IAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGV 410
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSF-- 226
+V + + L+D+Y K G V++A F + DV + +AMI GY L+ A F
Sbjct: 411 PFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRW 470
Query: 227 ---DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT------- 276
+G++ N + L L L+ GK +H ++K GLE + S+T
Sbjct: 471 LIQEGMVPNCLT-MASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSG 529
Query: 277 ------AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFP------------------- 309
R P + WN MI +++NG E A+ LF
Sbjct: 530 RLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLS 589
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K + ++ ++ + ++ V + LIDMY+KCG + LA FD K+ V
Sbjct: 590 ACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVS 649
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
+++ YG HG E LFH + + GI+P H
Sbjct: 650 WNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMT 709
Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+H+A +VDL RAG + AF I +MP +LL A ++
Sbjct: 710 EEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRL 762
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 142/347 (40%), Gaps = 87/347 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNE 233
V L+DMYAKCG + A + F+ DV++ S MI Y + AF F L+ +
Sbjct: 300 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 359
Query: 234 --ENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------ 280
NEY + L ++ L+ GK +H IK+G E + + L+ A C
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419
Query: 281 ------YQPNVTLWNAMISGYAKNGYAEEAVKLF--------PKWMDYY----------- 315
N WN ++ G++++G EEA+ +F P Y
Sbjct: 420 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 479
Query: 316 -----------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
I KS + N+ ++ LID YAKCG + A F +++D++ +A+
Sbjct: 480 SIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIIS 539
Query: 365 GYGLHGLGEEGWVLFHHIRK------------------------------------HGIE 388
GY LHG + LF + K HGI+
Sbjct: 540 GYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIK 599
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P +HY +V LL RAG N A +FI ++P V RALLS+ I
Sbjct: 600 PSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 120/292 (41%), Gaps = 51/292 (17%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
+ +N V + LID Y+ C V A F+ + KD V+ +AM+ Y ++ +AF F
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252
Query: 228 GLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC- 279
+ + + N + + L + L + GK +HG IK + E + L+ + A C
Sbjct: 253 KMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG 312
Query: 280 ---------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------- 321
P +V L + MIS YA++ E+A +LF + M + +EY
Sbjct: 313 DIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQ 372
Query: 322 -----------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+++ V L+D YAKC +D + F D + V
Sbjct: 373 ACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVS 432
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
+ + VG+ GLGEE +F ++ + Y+ V+ A HA
Sbjct: 433 WNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 484
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 116/295 (39%), Gaps = 73/295 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHG-QIFSLGFLVCYLFDGLFDR------ 53
M+V+ PN VLKA V LPS+++G +HG I +L ++ L D
Sbjct: 254 MRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGD 313
Query: 54 -----------------TIVFLDLYHLWSRTEWSAFGSFDGLLSNE--ENEYG--TALDC 92
+ F+ + S AF F L+ + NEY + L
Sbjct: 314 IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 373
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLR 137
++ L+ GK +H IK+G E + + L+ A C N
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433
Query: 138 NAMISGYAKNGYAEEAVKLF--------PKWMDYY----------------------IGK 167
N ++ G++++G EEA+ +F P Y I K
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 493
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
S + N+ ++ LID YAKCG + A F +++D++ +A+I GY LH +A
Sbjct: 494 STFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAA 548
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 143/349 (40%), Gaps = 91/349 (26%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNE 233
V L+DMYAKCG + A + F+ DV++ S MI Y + AF F L+ +
Sbjct: 300 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 359
Query: 234 --ENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAVCR---- 280
NEY + L ++ L+ GK +H IK+G E SDL L+ A C
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHE--SDLFVGNALMDFYAKCNDMDS 417
Query: 281 --------YQPNVTLWNAMISGYAKNGYAEEAVKLF--------PKWMDYY--------- 315
N WN ++ G++++G EEA+ +F P Y
Sbjct: 418 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477
Query: 316 -------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
I KS + N+ ++ LID YAKCG + A F +++D++ +A+
Sbjct: 478 TASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAI 537
Query: 363 TVGYGLHGLGEEGWVLFHHIRK------------------------------------HG 386
GY LHG + LF + K HG
Sbjct: 538 ISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHG 597
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I+P +HY +V LL RAG N A +FI ++P V RALLS+ I
Sbjct: 598 IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 110/449 (24%), Positives = 173/449 (38%), Gaps = 124/449 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHG-QIFSLGFLVCYLFDGLFDR------ 53
M+V+ PN VLKA V LPS+++G +HG I +L ++ L D
Sbjct: 254 MRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGD 313
Query: 54 -----------------TIVFLDLYHLWSRTEWSAFGSFDGLLSNE--ENEYG--TALDC 92
+ F+ + S AF F L+ + NEY + L
Sbjct: 314 IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 373
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAVCR------------YQPNVT 135
++ L+ GK +H IK+G E SDL L+ A C N
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHE--SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEV 431
Query: 136 LRNAMISGYAKNGYAEEAVKLF--------PKWMDYY----------------------I 165
N ++ G++++G EEA+ +F P Y I
Sbjct: 432 SWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI 491
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AF 223
KS + N+ ++ LID YAKCG + A F +++D++ +A+I GY LH + A
Sbjct: 492 EKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADAL 551
Query: 224 GSFDGL-LSNEENEYGT--ALDCSCD--------LEFLEQGKIVHGFMIKLGLELESDLL 272
FD + SN E+ T AL C L + +I HG IK +E + ++
Sbjct: 552 ELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHG--IKPSMEHYTCIV 609
Query: 273 ISLTAVCRYQ------------PNVTLWNAMISG--YAKNG-----YAEEAVKLFPKWMD 313
L R P+ +W A++S KN AE+ +++ P+
Sbjct: 610 RLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDET 669
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
Y+ +L +MYA GS+D
Sbjct: 670 TYV-------------LLSNMYAAAGSLD 685
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 120/292 (41%), Gaps = 51/292 (17%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
+ +N V + LID Y+ C V A F+ + KD V+ +AM+ Y ++ +AF F
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252
Query: 228 GLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC- 279
+ + + N + + L + L + GK +HG IK + E + L+ + A C
Sbjct: 253 KMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG 312
Query: 280 ---------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------- 321
P +V L + MIS YA++ E+A +LF + M + +EY
Sbjct: 313 DIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQ 372
Query: 322 -----------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+++ V L+D YAKC +D + F D + V
Sbjct: 373 ACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVS 432
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
+ + VG+ GLGEE +F ++ + Y+ V+ A HA
Sbjct: 433 WNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 484
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 127/521 (24%), Positives = 209/521 (40%), Gaps = 122/521 (23%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
+ P+ T P VLKAC L +++G +H C + +GL +V L +++
Sbjct: 102 LKPDSYTYPSVLKACGGLRRVVLGQMIH---------TCLVKEGLMVDIVVGSSLVGMYA 152
Query: 66 RTEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 123
+ A FD + + + T + C E+ G M + G E +S
Sbjct: 153 KCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDS----- 207
Query: 124 LTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 183
VT+ A IS A+ + ++ + ++ S +R + V+ L+DM
Sbjct: 208 ----------VTITTA-ISSCARLLDLDRGREIHKELVN-----SGFRMDSFVSAALVDM 251
Query: 184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSF-----DGLLSNEENE 236
Y KCG +++A F++ +K VV ++MI GYG S F +G+
Sbjct: 252 YGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTL 311
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLI---------SLTAVCRYQP 283
T + CS + LE GK VHG++I+ ++ L S L+ S + + P
Sbjct: 312 TSTLMACSQSAQLLE-GKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMP 370
Query: 284 NVTL--WNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKS 319
T WN MISGY G +A++LF + ++ G+
Sbjct: 371 KTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGRE 430
Query: 320 EYR--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ NN +V L+DMYAKCG+V+ A F ++D+V ++M YG HG
Sbjct: 431 IHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGR 490
Query: 372 GEEGWVLF------------------------------------HHIRKHGIEPRHQHYA 395
E LF I +GI PR +HY+
Sbjct: 491 VYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYS 550
Query: 396 RVVDLLARAGYSNHAFKFIMNMP-IELRLSVRRALLSAWKI 435
++ LL RAG + A++ + + P I + L SA ++
Sbjct: 551 CLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRL 591
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 160/407 (39%), Gaps = 98/407 (24%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR---YQPNV--------- 134
L S + + L+QGK++H ++ LGL+ + + LISL C Y NV
Sbjct: 10 LRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFE 69
Query: 135 -TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN--------------------- 172
+L N +++GY +N +EA+ LF K M Y K +
Sbjct: 70 ISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIH 129
Query: 173 ----------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE 219
+++V + L+ MYAKC + A FD DKDV + +I Y G E
Sbjct: 130 TCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFE 189
Query: 220 WSA--FGSFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LI 273
+ FG + TA+ L L++G+ +H ++ G ++S + L+
Sbjct: 190 EALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALV 249
Query: 274 SLTAVC----------RYQPNVTL--WNAMISGYAKNGYAEEAVKLFP------------ 309
+ C PN T+ WN+MI+GY G ++LF
Sbjct: 250 DMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLT 309
Query: 310 ------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
K++ YI ++ + ++ +N+ L+D+Y KCG V+ A F
Sbjct: 310 TLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLM 369
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
V + M GY G + LF + K +EP + V+
Sbjct: 370 PKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVL 416
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 156/396 (39%), Gaps = 98/396 (24%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG-----------KSEYRNNVIVNTVLIDMYAK 186
AM+S Y++N E A + I K+ V L+DMYAK
Sbjct: 232 TAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAK 291
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNE--ENEYG--TA 240
CG + A + F+ DV++ S MI Y + AF F L+ + NEY +
Sbjct: 292 CGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSV 351
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNV 285
L ++ L+ GK +H IK+G E + + L+ A C N
Sbjct: 352 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 411
Query: 286 TLWNAMISGYAKNGYAEEAVKLF--------PKWMDYY---------------------- 315
WN ++ G++++G EEA+ +F P Y
Sbjct: 412 VSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS 471
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
I KS + N+ ++ LID YAKCG + A F +++D++ +A+ GY LHG +
Sbjct: 472 IEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADA 531
Query: 376 WVLFHHIRK------------------------------------HGIEPRHQHYARVVD 399
LF + K HGI+P +HY +V
Sbjct: 532 LELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVR 591
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LL RAG N A +FI ++P V RALLS+ I
Sbjct: 592 LLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 627
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 113/287 (39%), Gaps = 60/287 (20%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +N V + LID Y+ C V A F+ + KD V+ +AM+ Y ++
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC--------- 243
Query: 230 LSNEENEYGTALDCS-CDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------ 279
EN + A CS + QG +HG IK + E + L+ + A C
Sbjct: 244 ---PENAFRCAQSCSLLAISCARQG--IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 298
Query: 280 ----RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------ 321
P +V L + MIS YA++ E+A +LF + M + +EY
Sbjct: 299 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 358
Query: 322 ------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+++ V L+D YAKC +D + F D + V + +
Sbjct: 359 VQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIV 418
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
VG+ GLGEE +F ++ + Y+ V+ A HA
Sbjct: 419 VGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 465
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 108/282 (38%), Gaps = 39/282 (13%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EWSAFGSFDGL 229
R ++ VL++MY K G + A FDR ++++V ++ + ++ A +
Sbjct: 93 RLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152
Query: 230 LSNEENEYG-----TALDCSCDLEFLEQGKIVHGFMIKLGLE---------LESDLLISL 275
L E +E T L + ++ VH KLG + +++ L SL
Sbjct: 153 LRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSL 212
Query: 276 TAVCRY------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG-----------K 318
+ + + + +W AM+S Y++N E A + I K
Sbjct: 213 VSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCAIK 272
Query: 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVL 378
+ V L+DMYAKCG + A + F+ DV++ S M Y E+ + L
Sbjct: 273 TLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFEL 332
Query: 379 FHHIRKHGIEPRH-------QHYARVVDLLARAGYSNHAFKF 413
F + + + P Q +V L NHA K
Sbjct: 333 FLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 374
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 110/428 (25%), Positives = 166/428 (38%), Gaps = 110/428 (25%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPN 133
AL L F+++G VHGF+IK G + + LI L C + + +
Sbjct: 112 ALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERD 171
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
N+MI GY K G E A +LF + E RN + N+++ + VD+A
Sbjct: 172 SVSYNSMIDGYVKCGLVESAGELFD------LMPREKRNLITWNSMIGGYAQRADGVDVA 225
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251
FD +KD++ ++MI GY H A G F+ + + + +D L +
Sbjct: 226 EKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVH 285
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
K + M +V +N+M+SGY +N Y EA+++F
Sbjct: 286 VAKTLFDQM--------------------PHRDVVAYNSMMSGYVQNRYHMEALEVFNHM 325
Query: 312 -------------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
M YI + ++ + + LIDMY+KCGS
Sbjct: 326 EKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSKCGS 385
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------ 382
+ A F+ K + +AM G +HGLGE + + I
Sbjct: 386 IQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVLNA 445
Query: 383 ------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
RKH IEPR QHY +VD+LAR+G A I MPIE
Sbjct: 446 CSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPNDV 505
Query: 425 VRRALLSA 432
+ R L+A
Sbjct: 506 IWRTFLTA 513
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 43/311 (13%)
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
HG + L L +L S V ++ ++ L+ G+ K G ++
Sbjct: 83 HGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGTQVHG----------FL 132
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA 222
K+ +++ + LI +Y KCG + A FDR ++D V ++MI GY GL E SA
Sbjct: 133 IKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVE-SA 191
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL-GLELESDLLISLTAVCRY 281
FD + + N + ++ G+ + G+++ L +
Sbjct: 192 GELFDLMPREKRN-------------LITWNSMIGGYAQRADGVDVAEKLFDEMP----- 233
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ ++ WN+MI GY K+G E+A LF R +V+ ++ID Y K G V
Sbjct: 234 EKDLISWNSMIGGYVKHGRIEDAKGLF---------NVMPRRDVVTWAIMIDGYGKLGLV 284
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVVDL 400
+A FD+ +DVV ++M GY + E +F+H+ K + P V+
Sbjct: 285 HVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSA 344
Query: 401 LARAGYSNHAF 411
+A+ G + A
Sbjct: 345 IAQLGRLSKAI 355
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 154/364 (42%), Gaps = 104/364 (28%)
Query: 170 YRNNVIVNTVLIDMYAKC--GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF- 226
+ N + L+ YA+C +++ A FD D+DV + + +I GY + G F
Sbjct: 35 FEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGY-----ANLGPFM 89
Query: 227 -----------DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLL 272
G+ +N + L ++ ++G+ +HG ++K GL+L+ + L
Sbjct: 90 EALNIYEYMRCSGVAANRYT-FPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNAL 148
Query: 273 ISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPK---------- 310
++ A C + ++ WN+MISGYA NG A++A+ LF
Sbjct: 149 VAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQVQGDTVY 208
Query: 311 ------------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
W+ Y+ KS + + + LI MYA CG ++ A
Sbjct: 209 APDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMYANCGLLNSARD 268
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEE-------------------------------- 374
FDR DK++V+ +A+ YG+HG +E
Sbjct: 269 VFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIFLCLLSAFSHAGM 328
Query: 375 ---GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
G LF + +G+E +HYA VVD+L RAG+ + A +F+ NMP++ V ALL
Sbjct: 329 VAEGMELFEKMGDYGVEKSSEHYASVVDILGRAGFLHEAVEFVKNMPVQPGKDVYGALLG 388
Query: 432 AWKI 435
A +I
Sbjct: 389 ACRI 392
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 58/219 (26%)
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGY 144
++G+ +HG ++K GL+L+ + L++ A C + ++ N+MISGY
Sbjct: 124 KKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGY 183
Query: 145 AKNGYAEEAVKLFPK----------------------------------WMDYYIGKSEY 170
A NG A++A+ LF W+ Y+ KS
Sbjct: 184 AINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGI 243
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDG 228
+ + + LI MYA CG ++ A FDR DK++V+ +A+I YG+H + A F G
Sbjct: 244 ELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSG 303
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
L+ + + G C H M+ G+EL
Sbjct: 304 LIDSGLHPDGVIFLCLLS-------AFSHAGMVAEGMEL 335
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 90/430 (20%), Positives = 157/430 (36%), Gaps = 117/430 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LVCY------ 45
M+ + VA N T P VLKAC A+ G +HG + G LV +
Sbjct: 98 MRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNE 157
Query: 46 ------LFDGLFDRTIVF-----------------LDLYHLWSRTEWSAFGSFDGLLSNE 82
+FD + ++ IV L L+H + + D + + +
Sbjct: 158 IGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQVQG------DTVYAPD 211
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY--------- 130
L +++G +H ++IK G+EL++ L LI++ A C
Sbjct: 212 SATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFD 271
Query: 131 ---QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
N+ + NA+I Y +G+A+EA+K+F +D S + ++ L+ ++
Sbjct: 272 RIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLID-----SGLHPDGVIFLCLLSAFSHA 326
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDL 247
G V F++ D YG+ + S Y + +D
Sbjct: 327 GMVAEGMELFEKMGD------------YGVEKSS-------------EHYASVVDILGRA 361
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307
FL + F+ + ++ D+ +L CR N+ L + AE+ L
Sbjct: 362 GFLHEAV---EFVKNMPVQPGKDVYGALLGACRIHNNIELAEEI---------AEKLFVL 409
Query: 308 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMTV 364
P YI +L+ MY G + A +K++ + SA+ +
Sbjct: 410 DPDNAGRYI-------------ILVKMYEDAGKWENAARLRKALKEKNIRKPLGCSAIEL 456
Query: 365 GYGLHGLGEE 374
G LH G E
Sbjct: 457 GCVLHTFGVE 466
>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Brachypodium distachyon]
Length = 849
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 119/497 (23%), Positives = 191/497 (38%), Gaps = 141/497 (28%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC----- 128
G + +E T L L + E G+ VHG +K G + S++L+ + A C
Sbjct: 159 GTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMAD 218
Query: 129 ------RYQP----NVTLRNAMISGYAKNGYAEEAVKLFPKWM----------------- 161
P NV N M+ GYA+NG A A L +
Sbjct: 219 AECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVL 278
Query: 162 ----------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
+ + + + +V LI Y +CG + A FD K V
Sbjct: 279 PVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMV 338
Query: 206 VMRSAMIVGYGLH-EWSAFGSFDGLLSNEENE------YGTALDCSCDLEFLEQGKIVHG 258
+A+I + + E SA ++N + G+ L +L+ L GK HG
Sbjct: 339 SSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHG 398
Query: 259 FMIKLGLELESDLLISLTAV---------------CRYQPNVTLWNAMISGYAKNGYAEE 303
F+++ GLE +S + +SL +V + + WN MI+GY++NG E
Sbjct: 399 FILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGE 458
Query: 304 AVKLFP--------------------------------KWMDYYIGKSEYRNNVIVNTVL 331
+++LF K M + K++ + +++ +
Sbjct: 459 SLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSI 518
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-- 389
IDMY+KCGSVD A +FFDR KD V + M GY ++G G+E L+ + + G+EP
Sbjct: 519 IDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDG 578
Query: 390 ----------------------------------RHQHYARVVDLLARAGYSNHAFKFIM 415
+ +HYA V+ +L+RAG A +
Sbjct: 579 FTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALME 638
Query: 416 NMPIELRLSVRRALLSA 432
MP E + ++LSA
Sbjct: 639 VMPEEPDAKILSSVLSA 655
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 116/322 (36%), Gaps = 67/322 (20%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEW-SAFGSFDGL 229
V L+ MY +CG VD A F+ +++V +A++ GL + G
Sbjct: 101 VGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCLEDLGGT 160
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------- 279
+ +E T L L + E G+ VHG +K G + S++L+ + A C
Sbjct: 161 AAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAE 220
Query: 280 ----RYQP----NVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------- 312
P NV WN M+ GYA+NG A A L +
Sbjct: 221 CAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPV 280
Query: 313 --------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+ + + + +V LI Y +CG + A FD K V
Sbjct: 281 CSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSS 340
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNH------AF 411
+A+ + +G LF + G +P + + LL G H A
Sbjct: 341 WNALIGAHAQNGEASAAIELFREMTNACGQKP---DWFSIGSLLLACGNLKHLLHGKAAH 397
Query: 412 KFIMNMPIELRLSVRRALLSAW 433
FI+ +E +R +LLS +
Sbjct: 398 GFILRNGLEKDSFIRVSLLSVY 419
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 125/523 (23%), Positives = 207/523 (39%), Gaps = 127/523 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQI----FSLGFLVCYLFDGLFDRTIVFLDLY 61
V P+ T ++KAC +L + +G ++H + F + ++ ++ + +D
Sbjct: 160 VMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDAL 219
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
++SR + + G ++ GF +LG ELE+
Sbjct: 220 DVFSRMATR--------------------------DLISWGSMIAGFS-QLGYELEALCY 252
Query: 122 IS-LTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
+ Y PN + ++ S + E +L + + +G+ +V L
Sbjct: 253 FKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGR-----DVFAGCSL 307
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHEWSAFGS---FDGLLSNE 233
DMYAKCG + A + F + D+V +A+I G+ E AF S GL+ +E
Sbjct: 308 CDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDE 367
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC----------- 279
C+ E L QG VHG++ K+GL+L+ + L+++ A C
Sbjct: 368 ITVRSLLCACTSPSE-LYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFE 426
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-------------- 314
R ++ WNA+++ ++ AEE +L P ++
Sbjct: 427 EMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIE 486
Query: 315 -------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
Y K+ + V LID+YAKCGS+ A FD ++ DVV S++ +GY
Sbjct: 487 IGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYA 546
Query: 368 LHGLGEEGWVLFHHIRK------------------------------------HGIEPRH 391
G GEE LF +R+ GI P
Sbjct: 547 QFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTR 606
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+H + +VDLLARAG N A FI M + + V + LL+A K
Sbjct: 607 EHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACK 649
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 52/275 (18%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA---- 222
KS+ ++ + +++MY KC S+ A FD +++VV +++I GY +
Sbjct: 91 KSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALE 150
Query: 223 --FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-------------LGLEL 267
F + ++ +G+ + L + G+ +H ++K + +
Sbjct: 151 FYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYT 210
Query: 268 ESDLLISLTAVCRYQPNVTL--WNAMISGYAKNGYAEEAVKLFPKWM--------DYYIG 317
+S+L+I V L W +MI+G+++ GY EA+ F + + ++ G
Sbjct: 211 KSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFG 270
Query: 318 ----------KSEYRN-------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
+ EY +V L DMYAKCG + A + F +
Sbjct: 271 SVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRP 330
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
D+V +A+ G+ G +E F +R G+ P
Sbjct: 331 DLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIP 365
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS+ ++ + +++MY KC S+ A FD +++VV +++ GY +G G
Sbjct: 91 KSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALE 150
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAG 405
+ + + G+ P + ++ + G
Sbjct: 151 FYFQMLQSGVMPDQFTFGSIIKACSSLG 178
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 143/605 (23%), Positives = 230/605 (38%), Gaps = 180/605 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV--------------CYL 46
M+V+ + + CT P +LKAC L G VHG G++ C
Sbjct: 207 MRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCND 266
Query: 47 FDG---LFDRTIVFLDLYHLWSR--TEWSAFG-SFDGL----------LSNEENEYGTAL 90
+G LFDR D+ W+ + +S+ G S + L L+ + AL
Sbjct: 267 LNGARQLFDRMPEKEDVVS-WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAAL 325
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY-----QPNVTLR----- 137
D F++QG +H ++K + ++ LI++ A R+ N+
Sbjct: 326 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNMDDWD 383
Query: 138 ----NAMISGYAKNGYAEEAVKLFPKWMDY------------------------------ 163
N+M+SG+ +NG EA++ + + D
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA 443
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
Y K+ +++ V L+DMYAK S+ FD+ DKDVV + +I G H +
Sbjct: 444 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAG---HAQNGS 500
Query: 224 GSFDGLLSNEENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
S L E G LD CS L+ + K +H ++I+ GL SDL++
Sbjct: 501 HSRALELFREVQLEGIDLDVMMISSILLACS-GLKLISSVKEIHSYIIRKGL---SDLVL 556
Query: 274 SLTAVCRYQ-----------------PNVTLWNAMISGYAKNGYAEEAVKLFP------- 309
V Y +V W +MIS Y NG A EA++LF
Sbjct: 557 QNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGV 616
Query: 310 -----------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
K + ++ + + + + L+DMYA+CG+++ +
Sbjct: 617 EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRN 676
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------- 391
F+ +KD+V+ ++M YG+HG G LF + I P H
Sbjct: 677 VFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGL 736
Query: 392 ---------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
+HY +VDLL RA + A++F+ M +E V ALL
Sbjct: 737 MNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALL 796
Query: 431 SAWKI 435
A +I
Sbjct: 797 GACQI 801
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 160/426 (37%), Gaps = 111/426 (26%)
Query: 71 AFGSFDGLLSNE-------ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 123
AF S L +N+ + Y + L+ + L +G+ VH MI L + + +S
Sbjct: 95 AFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSN-ALFNSVFLS 153
Query: 124 LTAVCRY---------------QPNVTLR--NAMISGYAKNG--------YAEEAVK--- 155
V Y P+ T+ NAMI Y NG Y E V
Sbjct: 154 TRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIP 213
Query: 156 ----LFPKWM-------DYYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
FP + D G K Y + V V ++ MY KC ++ A
Sbjct: 214 LDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQL 273
Query: 197 FDRTLDK-DVVMRSAMIVGYGLHEWSA-----FGSFD-GLLSNEENEYGTALDCSCDLEF 249
FDR +K DVV ++MI Y + S FG L+ + AL D F
Sbjct: 274 FDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSF 333
Query: 250 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP--------------NVTLWNAMI 292
++QG +H ++K + ++ LI++ A R+ + WN+M+
Sbjct: 334 IKQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYNMDDWDTISWNSML 391
Query: 293 SGYAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYR 322
SG+ +NG EA++ + + D Y K+
Sbjct: 392 SGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLD 451
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+++ V L+DMYAK S+ FD+ DKDVV + + G+ +G LF +
Sbjct: 452 SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREV 511
Query: 383 RKHGIE 388
+ GI+
Sbjct: 512 QLEGID 517
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 174/420 (41%), Gaps = 119/420 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDY------------------------------YIGK 167
NAMI+GY+K+G E+AV LF + + ++ K
Sbjct: 219 NAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIK 278
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFG 224
+ + NV V+ L+D Y+K SV A FD ++D V + +I GY G H++ AF
Sbjct: 279 TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKY-AFD 337
Query: 225 SFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
F L ++ + T L + + E G+ +H I + E + L+ + A
Sbjct: 338 LFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYA 397
Query: 278 VC-RYQ------PNVTL-----WNAMISGYAKNGYAEEAVKLFPK--------------- 310
C +++ N+T W AMIS Y + G+ EE ++LF K
Sbjct: 398 KCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFAS 457
Query: 311 ---------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ +I KS + +NV + L+D+YAKCGS+ A F D++
Sbjct: 458 LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRN 517
Query: 356 VVMRSAMTVGY-------------------GLH----------------GLGEEG-WVLF 379
+V +AM Y GL GL EEG W
Sbjct: 518 IVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFN 577
Query: 380 HHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQ 439
+ + ++PR +HYA VVD+L R+G N A K + MPI+ + ++L+A +I Q
Sbjct: 578 SMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQ 637
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 112/281 (39%), Gaps = 53/281 (18%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSF 226
Y + +IV L+D Y K +DLA F + D V +AMI GY GL E A F
Sbjct: 180 YDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDE-KAVNLF 238
Query: 227 ----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-------------LGLELES 269
+ L E + L + L+ + G+ +H F+IK L +
Sbjct: 239 VEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKH 298
Query: 270 DLLISLTAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLF------------------- 308
D +I + P + +N +ISGYA +G + A LF
Sbjct: 299 DSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATML 358
Query: 309 ---PKWMDYYIGKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+D+ +G+ + ++ V L+DMYAKCG + A M F + V
Sbjct: 359 SIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAV 418
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+AM Y G EEG LF+ +R+ + +A ++
Sbjct: 419 PWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 59/269 (21%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ P+ + N + + KNG +A +LF K ++N V N ++I Y K G+
Sbjct: 48 FDPDTSRSNFRVGNFLKNGELSQARQLFEKM--------PHKNTVSTN-MMISGYVKSGN 98
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
+ A FD +++ V + +I GY ++ N++ A + F
Sbjct: 99 LGEARKLFDGMVERTAVTWTILIGGY----------------SQLNQFKEAFEL-----F 137
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
++ + C +P+ + ++SG + + ++
Sbjct: 138 VQMQR------------------------CGTEPDYVTFVTLLSGCNGHEMGNQITQVQT 173
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+ I K Y + +IV L+D Y K +DLA F + D V +AM GY
Sbjct: 174 Q-----IIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKD 228
Query: 370 GLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
GL E+ LF ++ G++P +A V+
Sbjct: 229 GLDEKAVNLFVEMQNSGLKPTEFTFAAVL 257
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 136/329 (41%), Gaps = 84/329 (25%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
+V LI MY KCGS+ A + FD + +VV + MI G FG D
Sbjct: 160 DVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITG-------CFGCGD----- 207
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
E L + V G KLG D+ SL + + +V W +MI
Sbjct: 208 --TERARRLFGEMPERNVGSWNAVVGGYSKLG---HVDIARSLFDLMP-ERDVVSWGSMI 261
Query: 293 SGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYR 322
S Y +NG A EA++LF +W+ Y+ +S+ R
Sbjct: 262 SAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLR 321
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG---------- 372
N+V ++T L+DMYAKCG +D A F+ K++ +AM G +HG G
Sbjct: 322 NDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQM 381
Query: 373 -------------------------EEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGY 406
EEGW F+ + K I P+ +HY +VD+L R G
Sbjct: 382 ESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGL 441
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
N A + I MP+E + + ALL+A K+
Sbjct: 442 INEAKEMIRTMPLEPNVVIWGALLNACKV 470
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 61/220 (27%)
Query: 139 AMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKS 168
+MIS Y +NG A EA++LF +W+ Y+ +S
Sbjct: 259 SMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRS 318
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
+ RN+V ++T L+DMYAKCG +D A F+ K++ +AM+ G +H F + +
Sbjct: 319 KLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHG-HGFAALEL 377
Query: 229 LLSNEENEYG------TALDCSC----------------DLEFLEQGKIVH-GFMIKL-- 263
E G A+ +C D EF K+ H G M+ +
Sbjct: 378 FKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILC 437
Query: 264 --GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA 301
GL E+ +I + +PNV +W A+++ +GY
Sbjct: 438 RQGLINEAKEMIRTMPL---EPNVVIWGALLNACKVHGYT 474
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 149/365 (40%), Gaps = 120/365 (32%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL 229
+N I+N L YA G +D + F+ + +V SA+I + AFG + +
Sbjct: 77 HNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQM 136
Query: 230 LSN--EENEYG-TALDCSCDLEFLEQGKIVHGFMIKLGL--------------------- 265
LS E N + +++ SC LE GK++H IKLGL
Sbjct: 137 LSCGVEPNAFTFSSVLKSCSLE---SGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVV 193
Query: 266 -------ELESDLLISLTAVCR------------------YQPNVTLWNAMISGYAKNGY 300
++ L+SLT + + +V WN MI GYA++G
Sbjct: 194 CARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGV 253
Query: 301 AEEAVKLFPK------------------------------WMDYYIGKSEYRNNVIVNTV 330
E++KLF + W+ YI + NV V T
Sbjct: 254 PNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTA 313
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH--------------------- 369
LIDMY+KCGS++ A + FDR DKDVV ++M VGY +H
Sbjct: 314 LIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPT 373
Query: 370 --------------GLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
GL EEG F +R K+GIEP+ +HY +V+LL RAG+ A+ +
Sbjct: 374 DITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLV 433
Query: 415 MNMPI 419
NM I
Sbjct: 434 KNMTI 438
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 112/268 (41%), Gaps = 87/268 (32%)
Query: 38 SLGFLVCYLFD-GLFDRTIVF----LDLYHLWSRTEWSAFGSFDGLLSN--EENEYG-TA 89
+LG L C +F FD VF + H+ SR AFG + +LS E N + ++
Sbjct: 91 ALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSS 150
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGL----------------------------ELESDLL 121
+ SC LE GK++H IKLGL ++ L
Sbjct: 151 VLKSCSLE---SGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSL 207
Query: 122 ISLTAVCR------------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPK---- 159
+SLT + + +V N MI GYA++G E++KLF +
Sbjct: 208 VSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVA 267
Query: 160 --------------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
W+ YI + NV V T LIDMY+KCGS++ A
Sbjct: 268 KAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDA 327
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
+ FDR DKDVV ++MIVGY +H +S
Sbjct: 328 RLVFDRIRDKDVVAWNSMIVGYAMHGFS 355
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 192/483 (39%), Gaps = 125/483 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
V PNG T +L+AC +LL PR VHGQI GF +F + +D+Y
Sbjct: 107 VPPNGFTFTFLLRAC----ALLGLPRPCGCVHGQIVRCGF-----GSDVFVQN-ALMDVY 156
Query: 62 H----LWSRTEWSAFGSFDGLLSNEENE-------YGTALDCSCDLEFLE---QGKIVHG 107
H +A FD ++ + Y ++ D + + F E + +V
Sbjct: 157 HRCGGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSW 216
Query: 108 FMIKLGLELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
+ G D+ ++ AV P N N MISGYA +G E A +F + MD
Sbjct: 217 NTVVAGFARMGDM-VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDR-MD--- 271
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
+ +V+ T ++ YAK G +D FD K++V +AMI GY
Sbjct: 272 -----QKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGY---------- 316
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
N + Y AL + L LE R++P+
Sbjct: 317 ------NHNSRYDEALR-TFQLMMLEG---------------------------RFRPDE 342
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+++S A+ G E + W+ +IGKS V + LIDM+AKCG V A
Sbjct: 343 ATLVSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAE 397
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------------- 372
F + + ++ + M G+ +GL
Sbjct: 398 SIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGG 457
Query: 373 --EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
+EGW +F+ + ++ I+PR +HY +VDLL RAG A FI +MP+E + + L
Sbjct: 458 LLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTL 517
Query: 430 LSA 432
L +
Sbjct: 518 LCS 520
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 142/347 (40%), Gaps = 87/347 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNE 233
V L+DMYAKCG + A + F+ DV++ S MI Y + AF F L+ +
Sbjct: 300 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 359
Query: 234 --ENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------ 280
NEY + L ++ L+ GK +H IK+G E + + L+ A C
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419
Query: 281 ------YQPNVTLWNAMISGYAKNGYAEEAVKLF--------PKWMDYY----------- 315
N WN ++ G++++G EEA+ +F P Y
Sbjct: 420 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 479
Query: 316 -----------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
I KS + N+ ++ LID YAKCG + A F +++D++ +A+
Sbjct: 480 SIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIIS 539
Query: 365 GYGLHGLGEEGWVLFHHIRK------------------------------------HGIE 388
GY LHG + LF + K HGI+
Sbjct: 540 GYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIK 599
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P +HY +V LL RAG N A +FI ++P V RALLS+ I
Sbjct: 600 PSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 121/295 (41%), Gaps = 51/295 (17%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
K + +N V + LID Y+ C V A F+ + KD V+ +AM+ Y ++ +AF
Sbjct: 190 KLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFR 249
Query: 225 SFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTA 277
F + + + N + + L + L + GK +HG IK + E + L+ + A
Sbjct: 250 VFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYA 309
Query: 278 VC----------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY---- 321
C P +V L + MIS YA++ E+A +LF + M + +EY
Sbjct: 310 KCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSS 369
Query: 322 --------------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+++ V L+D YAKC +D + F D +
Sbjct: 370 VLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDAN 429
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
V + + VG+ GLGEE +F ++ + Y+ V+ A HA
Sbjct: 430 EVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 484
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 116/295 (39%), Gaps = 73/295 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHG-QIFSLGFLVCYLFDGLFDR------ 53
M+V+ PN VLKA V LPS+++G +HG I +L ++ L D
Sbjct: 254 MRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGD 313
Query: 54 -----------------TIVFLDLYHLWSRTEWSAFGSFDGLLSNE--ENEYG--TALDC 92
+ F+ + S AF F L+ + NEY + L
Sbjct: 314 IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 373
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLR 137
++ L+ GK +H IK+G E + + L+ A C N
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433
Query: 138 NAMISGYAKNGYAEEAVKLF--------PKWMDYY----------------------IGK 167
N ++ G++++G EEA+ +F P Y I K
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 493
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
S + N+ ++ LID YAKCG + A F +++D++ +A+I GY LH +A
Sbjct: 494 STFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAA 548
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 182/467 (38%), Gaps = 133/467 (28%)
Query: 103 KIVHGFMIKLGLELESDLLIS--LTAVC--------RY---------QPNVTLRNAMISG 143
K +H +IK ++ L IS L+A+C RY PN+ L NA+I G
Sbjct: 54 KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAIIRG 113
Query: 144 YA-KNGYAEEAVKLFPKWMDYYIGKSEYR------------------------------N 172
A N + E + ++ + + I Y +
Sbjct: 114 LATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLAS 173
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
+V V+ L+ MYA C + A FD + +D+V + MI GY ++ G ++ N
Sbjct: 174 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRN 233
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
+ + +L+ G F K+ E+ NV WN+MI
Sbjct: 234 SNVNLDVFVGNALVDMYLKCGDA--NFARKVFQEMPVK-------------NVVSWNSMI 278
Query: 293 SGYAKNGYAEEAVKLFPK------------------------------WMDYYIGKSEYR 322
SG A+ G +E++ +F K W+ Y+ +++ R
Sbjct: 279 SGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 338
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+ + L+DMYAKCGS+D A F KDV +AM VG +HG G + LF +
Sbjct: 339 ADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEM 398
Query: 383 RKHGIEPRH------------------------------------QHYARVVDLLARAGY 406
K GIEP +HY +VDLL RAG
Sbjct: 399 PKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGL 458
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI--PMQQWENMLQTIRGID 451
N A +FI NMPIE V ALL A KI ++ E++++ I I+
Sbjct: 459 INEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIE 505
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 98/431 (22%), Positives = 154/431 (35%), Gaps = 105/431 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
+ P+ T P VLKAC ++ G VHGQ +G R D+
Sbjct: 136 IVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIR--- 192
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK---IVHGFMIKLGLELESDLLI 122
SA FD + + T + + F +G I+ + L + + L+
Sbjct: 193 ----SARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDV-FVGNALV 247
Query: 123 SLTAVC----------RYQP--NVTLRNAMISGYAKNGYAEEAVKLFPK----------- 159
+ C + P NV N+MISG A+ G +E++ +F K
Sbjct: 248 DMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDV 307
Query: 160 -------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
W+ Y+ +++ R + + L+DMYAKCGS+D A F
Sbjct: 308 TLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAM 367
Query: 201 LDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
KDV +AMIVG +H + G ALD F E M
Sbjct: 368 NRKDVYSYTAMIVGLAMH----------------GQGGKALDL-----FSE--------M 398
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
K+G+E + + + C + G EE K F Y
Sbjct: 399 PKMGIEPDEVTFVGVLTACSHV----------------GLVEEGRKYFEDMSTIY----N 438
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFF-DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
R + ++D+ + G ++ A F + ++ D + A+ +HG E G +
Sbjct: 439 LRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVM 498
Query: 380 HHIRKHGIEPR 390
I K IEPR
Sbjct: 499 KKIEK--IEPR 507
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 147/347 (42%), Gaps = 93/347 (26%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL----HEWSAFGS---FDGLL 230
L+ MYAKCGS+D + F+ + DK+ + SAMI GY H+ S F G+
Sbjct: 251 NALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGIN 310
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------- 281
+E G CS D +E+GK VH +++KLG E S L I V Y
Sbjct: 311 PSEFTLVGVLNACS-DACAVEEGKQVHNYLLKLGFE--SQLYIMTALVDMYAKSGVTEDA 367
Query: 282 --------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN---------- 323
QP++ LW +MI+GY +NG E+A+ L+ + I +E
Sbjct: 368 RKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNL 427
Query: 324 --------------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
V + + L MYAKCG+++ + F R ++D++ +AM
Sbjct: 428 AAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMI 487
Query: 364 VGYGLHGLGEEGWVLFHHIRKH------------------------------------GI 387
G +G G+E LF +R+ G+
Sbjct: 488 SGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGL 547
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
P+ +HYA +VD+L+RAG A +FI + I+ L + R LL A +
Sbjct: 548 LPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACR 594
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 51/277 (18%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V V + L++MY K G + A FDR +++ V + MI GY + + AF F+ +
Sbjct: 145 DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMR 204
Query: 231 SNEE--NEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---- 279
EE NE+ + L EF++ GK +H +K GL + + L+++ A C
Sbjct: 205 REEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLD 264
Query: 280 --------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
N W+AMI+GYA++G + +A+KLF
Sbjct: 265 DSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACS 324
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
K + Y+ K + + + + T L+DMYAK G + A F+ D+V+ ++
Sbjct: 325 DACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTS 384
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
M GY +G E+ L+ ++ GI P A V+
Sbjct: 385 MIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVL 421
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 106/267 (39%), Gaps = 61/267 (22%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF----------DGL 229
LI+ YAKC + A + FDR +KDV+ + +I GY + SF D +
Sbjct: 49 LINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYS-QQGPTGSSFVMELFQRMRADNI 107
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-------------LGLELESDLLISLT 276
L N G + +L + G+ H IK L + ++ LL
Sbjct: 108 LPNAHTFSGI-FTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAR 166
Query: 277 AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLF------------------------PK 310
V P N W MISGYA A EA ++F P+
Sbjct: 167 EVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPE 226
Query: 311 WMDYYIGKSEY----RNNVIVN----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
++D GK + + ++V L+ MYAKCGS+D + F+ + DK+ + SAM
Sbjct: 227 FVDS--GKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAM 284
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEP 389
GY G + LF + GI P
Sbjct: 285 ITGYAQSGDSHKALKLFSRMHFAGINP 311
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 47/204 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFD---RTIV 56
M A + P+ T VL AC ++ G +VH + LGF Y+ L D ++ V
Sbjct: 304 MHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGV 363
Query: 57 FLDLYHLWSRTE------WSAFGSFDGLLSNEENEYGTALDCSCDLEFL----------- 99
D ++ + W++ G + N ENE +L C +E +
Sbjct: 364 TEDARKGFNYLQQPDLVLWTSM--IAGYVQNGENEDALSLYCRMQMEGILPNELTMASVL 421
Query: 100 ---------EQGKIVHGFMIKLGLELESDL---LISLTAVCRY--QPNVTLR-------- 137
+QG+ +H IK GL LE + L ++ A C + N+ R
Sbjct: 422 KACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDII 481
Query: 138 --NAMISGYAKNGYAEEAVKLFPK 159
NAMISG ++NGY +EA++LF +
Sbjct: 482 SWNAMISGLSQNGYGKEALELFEE 505
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 170/417 (40%), Gaps = 125/417 (29%)
Query: 139 AMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKSEY----RN 172
MISGYA + A++AV++F + Y G+ + +N
Sbjct: 189 TMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKN 248
Query: 173 NVI----VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSF 226
++ V L+ MYAKCGS+D A F+ + DK+ + SAM+ GY G A F
Sbjct: 249 GLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLF 308
Query: 227 D-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV--- 278
+ G+L +E G CS DL + +GK +H F KLG L+ L L+AV
Sbjct: 309 NKMHSSGVLPSEFTLVGVINACS-DLCAVVEGKQMHSFAFKLGFGLQ---LYVLSAVVDM 364
Query: 279 ---------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW------------ 311
C QP+V LW ++I+GY +NG E + L+ K
Sbjct: 365 YAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTM 424
Query: 312 ------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
M I K ++ V + + L MY KCGS+D + F R
Sbjct: 425 ASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPS 484
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------RH---------- 391
+DV+ +AM G +G G + LF + GI+P H
Sbjct: 485 RDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEY 544
Query: 392 --------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HYA +VD+L+RAG N A +FI + ++ L + R LL A K
Sbjct: 545 FKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACK 601
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 68/322 (21%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYGLHEWSA 222
I K+ +++ V +++YAK + A FD DKD V +++I + + S+
Sbjct: 37 ILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSS 96
Query: 223 FGSF-----------DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
SF + ++ N G + +L + GK H +K G D+
Sbjct: 97 SSSFAISLFRRMMRANNVIPNAHTLAGV-FSAASNLSDVVAGKQAHSVAVKTG--CSGDV 153
Query: 272 LISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLF------ 308
+ + + Y + N W MISGYA + A++AV++F
Sbjct: 154 YVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRRE 213
Query: 309 ----------------PKWMDYYIGKSEY----RNNVI----VNTVLIDMYAKCGSVDLA 344
+ Y G+ + +N ++ V L+ MYAKCGS+D A
Sbjct: 214 EEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDA 273
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV----DL 400
F+ + DK+ + SAM GY G ++ LF+ + G+ P V+ DL
Sbjct: 274 VRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDL 333
Query: 401 LARA-GYSNHAFKFIMNMPIEL 421
A G H+F F + ++L
Sbjct: 334 CAVVEGKQMHSFAFKLGFGLQL 355
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 157/380 (41%), Gaps = 100/380 (26%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS 168
P+V+ N MI GYAK G++ EA+KL+ K + D +GK
Sbjct: 194 HPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKG 253
Query: 169 E----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
Y +N+I++ L+DMY KC LA FD KD+ + M+VG+
Sbjct: 254 VHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRL 313
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
G E +A FD + + + + L CD + + L
Sbjct: 314 GDME-AAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRE------------------L 354
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331
+T V + +P+ ++ISG A NG +W+ + + + + + +++ L
Sbjct: 355 FYEMTIVEKVKPDRVTMVSLISGAANNGELSHG-----RWVHGLVIRLQLKGDAFLSSAL 409
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------- 372
IDMY KCG ++ A M F +KDV + ++M G HG G
Sbjct: 410 IDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNN 469
Query: 373 ----------------EEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
EEG +F+H++ K G +P +HY +VDLL RAG A +
Sbjct: 470 VTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQ 529
Query: 416 -NMPIELRLSVRRALLSAWK 434
MP+ S+ ++LSA +
Sbjct: 530 KKMPMRPSQSMWGSILSACR 549
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 118/491 (24%), Positives = 185/491 (37%), Gaps = 148/491 (30%)
Query: 17 LKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFD 76
L AC L L +G ++H SL + YL D +V D+Y R E+ A FD
Sbjct: 158 LSACAGLQDLKLGSQIH----SLVYRSNYLSDVYMGSALV--DMYSKCGRVEY-AQSVFD 210
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 136
+ + + + C +++ + MIK G+E + L S+ + C
Sbjct: 211 EMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSAC-------- 262
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
A IS A+K + + E+RN++I+ L+DMYAKC ++ A +
Sbjct: 263 --ATIS----------AIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARII 310
Query: 197 FDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
FD + VV ++M+ GY
Sbjct: 311 FDMMPIRSVVSETSMVSGYA---------------------------------------- 330
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------PK 310
+K+ + S++++ +V WNA+I+G +NG EEA+ LF
Sbjct: 331 KASKVKVARYMFSNMMV---------KDVITWNALIAGCTQNGENEEALILFRLLKRESV 381
Query: 311 WMDYY----------------IGKSEYR--------------NNVIVNTVLIDMYAKCGS 340
W +Y +G+ + ++V V LIDMY KCGS
Sbjct: 382 WPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGS 441
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF----------HHIR------- 383
V+ F L+KD V +AM VGY +G G + +F H+
Sbjct: 442 VENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCA 501
Query: 384 -------------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
+HG+ P HY +VDLL RAGY A I M ++
Sbjct: 502 CSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAI 561
Query: 425 VRRALLSAWKI 435
V +LL+A K+
Sbjct: 562 VWGSLLAACKV 572
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 144/375 (38%), Gaps = 127/375 (33%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------G 216
I KS + + + LID+Y KCG VD+A FDR L++++ +++I +
Sbjct: 45 IIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDA 104
Query: 217 LH-----------EWSAF-------GSFD------------GLLSNEENEYGTALDCSCD 246
+H W++ G FD G L NE + +G+AL
Sbjct: 105 VHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYS-FGSALSACAG 163
Query: 247 LEFLEQGKIVHGFMIK---LGLELESDLLISLTAVC---RYQPNV---------TLWNAM 291
L+ L+ G +H + + L L+ + + C Y +V WN++
Sbjct: 164 LQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSL 223
Query: 292 ISGYAKNGYAEEAVKLFPKWMD-------------------------------YYIGKSE 320
I+ Y +NG +EA+K+F + + + E
Sbjct: 224 ITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDE 283
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG------------- 367
+RN++I+ L+DMYAKC ++ A + FD + VV ++M GY
Sbjct: 284 FRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFS 343
Query: 368 ------------------LHGLGEEGWVLFHHIRKHGIEPRHQHY-------ARVVDL-L 401
+G EE +LF +++ + P H + A + DL L
Sbjct: 344 NMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQL 403
Query: 402 ARAGYSN---HAFKF 413
R +S+ H F+F
Sbjct: 404 GRQAHSHVLKHGFRF 418
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 117/472 (24%), Positives = 184/472 (38%), Gaps = 142/472 (30%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--LISLTAVC-------RYQPNVTL 136
+ AL +++ L+ GK +H ++K+ L L+ + A C + ++TL
Sbjct: 157 FSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKVFEDITL 216
Query: 137 RN-----AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-------------- 177
RN +MI+GY KN EE + LF + + + +EY +V
Sbjct: 217 RNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWF 276
Query: 178 ----------------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
T L+DMY KCG + A F+ D+VM +AMIVGY +
Sbjct: 277 HGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGY-----T 331
Query: 222 AFGSFDGLLSNEENEYGTALDCSCD-----------LEFLEQGKIVHGFMIKLGL--ELE 268
GS + LS + G + +C + LE G+ +HG IK+G+
Sbjct: 332 HNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTNV 391
Query: 269 SDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM---- 312
++ L+ + A C + ++ WN++ISG+++NG EA+ LF +
Sbjct: 392 ANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESV 451
Query: 313 ------------------DYYIGKSEY----------RNNVIVNTVLIDMYAKCGSVDLA 344
IG S + ++V V T L+D YAKCG + A
Sbjct: 452 MPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESA 511
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-------------------- 384
+ FD +K+ + SAM GYG G + LF + K
Sbjct: 512 RLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHT 571
Query: 385 ----------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+ P +HY +VD+LARAG A I MPI+
Sbjct: 572 GMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQ 623
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 128/311 (41%), Gaps = 55/311 (17%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGLLSN 232
+V T L+DMYAKCG + + F+ ++VV ++MI GY ++ G F+ + N
Sbjct: 189 VVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMREN 248
Query: 233 E----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---C------ 279
E YGT + L L QGK HG +IK G+EL S L+ SL + C
Sbjct: 249 SVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNA 308
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------------------- 312
++ +W AMI GY NG EA+ LF K
Sbjct: 309 RRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLV 368
Query: 313 -DYYIGKSEYRNNVIVN-------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ +G+S + ++ V L+ MYAKC A F+ +KD+V +++
Sbjct: 369 GNLELGRSIHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIIS 428
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR-----AGYSNHAFKFIMNMPI 419
G+ +G E LFH + + P A + A G S HA+ +
Sbjct: 429 GFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLA 488
Query: 420 ELRLSVRRALL 430
+ V ALL
Sbjct: 489 SSSVHVGTALL 499
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 114/279 (40%), Gaps = 56/279 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
++ + T L+ +Y G A + FD+ + D + ++ Y L+ S +D L+
Sbjct: 87 DISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLM 146
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKL---------GL--------ELES 269
+ ++ + AL +++ L+ GK +H ++K+ GL E++S
Sbjct: 147 KHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTGLLDMYAKCGEIKS 206
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN- 328
+ R NV W +MI+GY KN EE + LF + + + +EY +V
Sbjct: 207 SYKVFEDITLR---NVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMA 263
Query: 329 -----------------------------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
T L+DMY KCG + A F+ D+VM
Sbjct: 264 CTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMW 323
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+AM VGY +G E LF + GI+P A V+
Sbjct: 324 TAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVL 362
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 125/326 (38%), Gaps = 101/326 (30%)
Query: 99 LEQGKIVHGFMIKLGL--ELESDLLISLTAVC------------RYQPNVTLRNAMISGY 144
LE G+ +HG IK+G+ ++ L+ + A C + ++ N++ISG+
Sbjct: 371 LELGRSIHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGF 430
Query: 145 AKNGYAEEAVKLFPKWM----------------------DYYIGKSEY----------RN 172
++NG EA+ LF + IG S + +
Sbjct: 431 SQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASS 490
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
+V V T L+D YAKCG + A + FD +K+ + SAMI GYG
Sbjct: 491 SVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYG---------------- 534
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
+QG K LEL ++L + +PN + + +++
Sbjct: 535 ------------------KQGD------TKGSLELFEEMLKK-----QQKPNESTFTSVL 565
Query: 293 SGYAKNGYAEEAVKLFPK-WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
S + G E K F + DY S T ++DM A+ G ++ A ++
Sbjct: 566 SACSHTGMVNEGKKYFSSMYKDYNFTPSTKH-----YTCMVDMLARAGELEQALDIIEKM 620
Query: 352 -LDKDVVMRSAMTVGYGLHG---LGE 373
+ DV A G G+H LGE
Sbjct: 621 PIQPDVRCFGAFLHGCGMHSRFDLGE 646
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 112/490 (22%), Positives = 200/490 (40%), Gaps = 148/490 (30%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR-------------Y 130
+L S + L +GK +H +M+ G L S L LI++ + C +
Sbjct: 42 ASLQASAHHKNLSKGKEIHSYMLINGF-LNSPLSITSLINMYSKCNQMNFALSIFSDPTH 100
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
+ NV NA+ISG+ NG+ EE + + K + + ++
Sbjct: 101 EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKKIHG 160
Query: 171 -------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+V + + L++ Y K G ++ A + F+ +DVV+ +AM+ GY +
Sbjct: 161 LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGY-----AQI 215
Query: 224 GSFDGLLS-----NEENEYGTALDCSCDLEF------LEQGKIVHGFMIKLGLE---LES 269
G F+ +L N+E+ + + L L G+I+HGF +K+G + S
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275
Query: 270 DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI- 316
+ LI + C+ + ++ WN+++S + + G + ++L + + I
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQ 335
Query: 317 ----------------------------------GKS-EYRNNVIVNTVLIDMYAKCGSV 341
GK + ++V++ +IDMYAKCGS+
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
A + F+R +KDV + M +GYG+HG G E +F +
Sbjct: 396 RDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSAC 455
Query: 383 -----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
K+ + P +HY V+D+L RAG + A++ + MPIE V
Sbjct: 456 SHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVV 515
Query: 426 RRALLSAWKI 435
RALL+A ++
Sbjct: 516 WRALLAACRL 525
>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
Length = 766
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 126/541 (23%), Positives = 221/541 (40%), Gaps = 162/541 (29%)
Query: 62 HLWSRTEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 117
H+ + A G F +L + ++ G+A+ +L + G+ VH +K E
Sbjct: 127 HVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKS--ERG 184
Query: 118 SDLLISLTAVCRYQPNVTLRN-----------------AMISGYAKNGYAEEAVKLFPKW 160
SDL++ V Y N + + ++I+G+A+ G+ EA+++F +
Sbjct: 185 SDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREM 244
Query: 161 M--------DYYIGKS---------------------EYR--NNVIVNTVLIDMYAKCGS 189
+ +++ G + +YR ++ V L DMYA+C +
Sbjct: 245 IVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKN 304
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS------NEENEYGTALD- 242
+D A + F R D+V ++++ Y S +GLLS +E + G D
Sbjct: 305 LDSARVAFYRIEAPDLVSWNSIVNAY---------SVEGLLSEALVLFSEMRDSGLRPDG 355
Query: 243 -------CSC-DLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR----------- 280
C+C + L G+++H +++KLGL+ + + L+S+ A C
Sbjct: 356 ITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHE 415
Query: 281 -YQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------------ 309
+V WN++++ A++ + EE +KLF
Sbjct: 416 IKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMV 475
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD-RTLDKDVVMRSAMTVGYGL 368
K + Y K+ ++ +++ LID YAKCGS+D A F+ ++DV S++ VGY
Sbjct: 476 KQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQ 535
Query: 369 HGLGEEGWVLFHHIRKHGIEPRH------------------------------------Q 392
G +E + LF +R GI P H +
Sbjct: 536 FGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTRE 595
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI--PMQQWENMLQTIRGI 450
H + +VDLLARAG A FI MP E + + + LL+A K+ M+ + + I I
Sbjct: 596 HCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNI 655
Query: 451 D 451
D
Sbjct: 656 D 656
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 118/276 (42%), Gaps = 56/276 (20%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGS 225
++ N ++ LI MY +C + D A FD ++ V +++I + A G
Sbjct: 80 AQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGL 139
Query: 226 FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F +L + ++ G+A+ +L + G+ VH +K E SDL++ V Y
Sbjct: 140 FSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKS--ERGSDLIVQNALVTMY 197
Query: 282 QPN-----------------VTLWNAMISGYAKNGYAEEAVKLFPKWM--------DYYI 316
N + W ++I+G+A+ G+ EA+++F + + +++
Sbjct: 198 SKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHF 257
Query: 317 GKS---------------------EYR--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
G + +YR ++ V L DMYA+C ++D A + F R
Sbjct: 258 GSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEA 317
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
D+V +++ Y + GL E VLF +R G+ P
Sbjct: 318 PDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRP 353
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 128/559 (22%), Positives = 198/559 (35%), Gaps = 166/559 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTIVF 57
P+ P V KAC AL G VHG + G F+ L D G+ D
Sbjct: 151 PDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKV 210
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENE--------------------YGTALDCSCDLE 97
D + W+A G + N NE T L S ++
Sbjct: 211 FDEIPERNVVAWNAL--MVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMV 268
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAV-CR--------------YQPNVTLRNAMIS 142
+E+GK H I GLEL++ L SL C+ + +V N +IS
Sbjct: 269 GVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLIS 328
Query: 143 GYAKNGYAEEAVKL------------------------------FPKWMDYYIGKSEYRN 172
GY + G E+A+ + F K + Y +
Sbjct: 329 GYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDT 388
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
++++ + +DMYAKCGS+ A FD T++KD+++ + ++ Y S
Sbjct: 389 DIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLS----------- 437
Query: 233 EENEYGTALDC--SCDLEFLEQGKIVHGFMI----KLGLELESDLLISLTAVCRYQPNVT 286
G AL LE + I +I + G E+ + PN+
Sbjct: 438 -----GEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLI 492
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMD-------------------------------YY 315
W M++G +NG +EEA+ K + Y
Sbjct: 493 SWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYI 552
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
I + ++V + T L+DMYAKCG ++ A F L ++ + +AM Y L+G +E
Sbjct: 553 IRNLRHSSSVSIETSLVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEA 612
Query: 376 WVLFHHIR------------------------------------KHGIEPRHQHYARVVD 399
L+ + KHG+ P +HY +VD
Sbjct: 613 IALYRSLEDMGIKPDSVTFTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVD 672
Query: 400 LLARAGYSNHAFKFIMNMP 418
LLA AG + A + I MP
Sbjct: 673 LLASAGETEKAIRLIEEMP 691
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 112/266 (42%), Gaps = 53/266 (19%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSF 226
Y N + T L+ YAKC +++ A + F + ++V +A+I GL E + G F
Sbjct: 83 YARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKCRIGLCEGALMG-F 141
Query: 227 DGLLSNEENEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC 279
+L NE + C L++ G+ VHG++IK GLE + L + C
Sbjct: 142 VEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKC 201
Query: 280 RY------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYYIGK 318
+ NV WNA++ GY +NG EEA++LF P +
Sbjct: 202 GVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCL 261
Query: 319 SEYRNNV---------------------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
S N V I+ T L++ Y K G ++ A M FDR DKDVV
Sbjct: 262 SASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVV 321
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ + GY GL E+ + +R
Sbjct: 322 TWNLLISGYVQQGLVEDAIYMSQLMR 347
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 135/542 (24%), Positives = 206/542 (38%), Gaps = 166/542 (30%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LVCY----------- 45
V P+ T P VLKAC + G VHG + LGF L+ +
Sbjct: 37 VRPDDHTFPFVLKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAG 96
Query: 46 -LFDGLFDRTIVFLD-LYHLWSRTEWSAFGSFD--------GLLSNEENEYGTALDCSCD 95
+FD + ++ +V + + ++S W + D GL N + L +
Sbjct: 97 RVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSIT-ISSFLPVLVE 155
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTLRN 138
LEF + G+ VHG I++GLE SD+ I+ + + Y NV N
Sbjct: 156 LEFFKAGREVHGSSIRMGLE--SDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWN 213
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDY----------------------YIGKSEYRNNV-- 174
AMI+ +A+N + AV L + DY GK + ++
Sbjct: 214 AMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHM 273
Query: 175 ------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
V+ L DMYAK G + LA FD +L +D V + +IVG+
Sbjct: 274 GCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL-RDEVSYNILIVGHS------------ 320
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288
DCS L + M +GL+ ++ + + C N+T
Sbjct: 321 ----------QTSDCSESLSLFSE-------MQLMGLKQDNVSFMGALSAC---ANLT-- 358
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
A+ G +G+ + + + ++ V L+D Y KCG + LA F
Sbjct: 359 -AIKQGKEIHGF---------------LLRKLFHIHLFVANSLLDFYTKCGRIGLARNIF 402
Query: 349 DRTLDKDVVMRSAMTVGYGL-----------------------------------HGLGE 373
DR +KDV + M +GYG+ GL E
Sbjct: 403 DRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLE 462
Query: 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+G F ++ GIEP HYA +VDLL RAG A + I +PI ++ ALL A
Sbjct: 463 KGRKYFDELKARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGAC 522
Query: 434 KI 435
+I
Sbjct: 523 RI 524
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 147/364 (40%), Gaps = 87/364 (23%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL- 217
K + + K + ++ + L++MY+ CG + A FD+ ++K VV + MI Y
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216
Query: 218 ---HEWSAFGSFDGLLSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
HE + S + NE L LE K VH ++ + G+ + L
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLT 276
Query: 273 ISLTAV-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------- 309
+L V C+ + N+ WN MI+G+ ++ EEA+ LF
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 336
Query: 310 ----------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
KW+ YI K + +V + T L+DMYAKCGS++ A
Sbjct: 337 GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 396
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR------------------------ 383
F +KDV+ +A+ VG + G G + LFH ++
Sbjct: 397 FQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLV 456
Query: 384 ------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
K+GI+P +HY +VD+L RAG A I NMP+ V LLS
Sbjct: 457 NEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLS 516
Query: 432 AWKI 435
A +I
Sbjct: 517 ACRI 520
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 123/474 (25%), Positives = 192/474 (40%), Gaps = 135/474 (28%)
Query: 96 LEFLEQGKIVHGFMIKLGLE----LESDLLI------SLTAVCRYQPNVTLRN-----AM 140
L LEQG+ VH ++K G++ LE+ LL SLT R ++ RN AM
Sbjct: 60 LRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAM 119
Query: 141 ISGYAKNGYAEEAVKLF---------PKWMDYYIGKSEYRNNVI---------------- 175
I + EA K + P + + + + N +
Sbjct: 120 IEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGL 179
Query: 176 -----VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
V T L+ MYAKCG + A + FDR +K+VV + +I GY + + + L
Sbjct: 180 ELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYA-QQGQVDVALELLE 238
Query: 231 SNEENE-------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL-TAVCRY- 281
+ ++ E + + L LE GK VH ++I+ G E ++ SL T C+
Sbjct: 239 TMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCG 298
Query: 282 -------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------------ 316
+V W AM++GYA+ G+ +EA+ LF + I
Sbjct: 299 GLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLT 358
Query: 317 ----------GK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
GK + Y +V + + L+ MYAKCGS+D A + F++ +++VV
Sbjct: 359 SCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVA 418
Query: 359 RSAMTVGY-GLHGLGEEGWVLFHHIRKHGIEP----------------------RH---- 391
+A+ G HG E F ++K GI+P +H
Sbjct: 419 WTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSM 478
Query: 392 ----------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY+ VDLL RAG+ A I++MP SV ALLSA ++
Sbjct: 479 YLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRV 532
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 52/227 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFD------G 49
MQ A VAPN T +L+ C +L G +VH I G+ +V L G
Sbjct: 240 MQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGG 299
Query: 50 LFDRTIVFLDLYH----LWSR--TEWSAFGSFDGLLS-----------NEENEYGTALDC 92
L + +F DL H W+ T ++ G D ++ ++ + + L
Sbjct: 300 LEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTS 359
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEE 152
FL++GK +H ++ G Y +V L++A++S YAK G ++
Sbjct: 360 CSSPAFLQEGKRIHQQLVHAG----------------YNLDVYLQSALVSMYAKCGSMDD 403
Query: 153 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199
A +F + + RN V ++ A+ G A +FD+
Sbjct: 404 ASLVFNQMSE--------RNVVAWTAIITGCCAQHGRCREALEYFDQ 442
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 146/354 (41%), Gaps = 88/354 (24%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFD 227
+ + + LID Y+ ++D A FD + DV + +I Y + A +D
Sbjct: 48 HEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVYD 107
Query: 228 GL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR 280
+ ++ Y L ++G+++HG +K G++L+ + L++ A C+
Sbjct: 108 AMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLDLFVGNALVAFYAKCQ 167
Query: 281 ------------YQPNVTLWNAMISGYAKNGYAEEAVKLF-------------------- 308
++ WN+MISGY NGY ++A+ LF
Sbjct: 168 DVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTV 227
Query: 309 -PK-----------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
P W+ YI K+ + V T LI +Y+ CG V +A FDR D+ V
Sbjct: 228 LPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSV 287
Query: 357 VMRSAMTVGYGLHGLGEE-----------------------------------GWVLFHH 381
++ SA+ YG HGL +E GW LF+
Sbjct: 288 IVWSAIIRCYGTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNA 347
Query: 382 IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +G+ HYA +VDLL RAG A +FI +MPI+ ++ ALL A +I
Sbjct: 348 METYGVAKSEAHYACIVDLLGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRI 401
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 47/166 (28%)
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGY 144
++G+++HG +K G++L+ + L++ A C+ ++ N+MISGY
Sbjct: 135 KKGRVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGY 194
Query: 145 AKNGYAEEAVKLF---------------------PK-----------WMDYYIGKSEYRN 172
NGY ++A+ LF P W+ YI K+
Sbjct: 195 TVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGL 254
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ V T LI +Y+ CG V +A FDR D+ V++ SA+I YG H
Sbjct: 255 DSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTH 300
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 139/346 (40%), Gaps = 92/346 (26%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--------LHEWSAFGSFDGLLS 231
LI YA+CG V A FD +D V ++MI GY + + G DG
Sbjct: 163 LITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEP 222
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC--------- 279
+E + C +L LE G+ V GF+++ G+ L S LIS+ A C
Sbjct: 223 DEMSLVSLLGACG-ELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRI 281
Query: 280 ---RYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------------- 309
+V WNA+ISGYA+NG A+EA+ LF
Sbjct: 282 FDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGAL 341
Query: 310 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
K +D Y + +++++ V T LIDMYAK GS+D A F K+ +AM
Sbjct: 342 DLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISAL 401
Query: 367 GLHGLGEEGWVLFHHIRKHG--------------------------------------IE 388
HG +E LF H+ G +
Sbjct: 402 AAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLV 461
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
P+ +HY+ +VDLLARAG+ A+ I MP + ALL A +
Sbjct: 462 PKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACR 507
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 140/381 (36%), Gaps = 85/381 (22%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTI 55
+ P+ T P +C L SL H +F L + Y GL
Sbjct: 118 LTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASAR 177
Query: 56 VFLDLYHLWSRTEWSAF--------------------GSFDGLLSNEENEYGTALDCSCD 95
D W++ G DG +E + C +
Sbjct: 178 KVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACG-E 236
Query: 96 LEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC------------RYQPNVTLRNAM 140
L LE G+ V GF+++ G+ L S LIS+ A C +V NA+
Sbjct: 237 LGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAV 296
Query: 141 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEY 170
ISGYA+NG A+EA+ LF K +D Y + +
Sbjct: 297 ISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGF 356
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
++++ V T LIDMYAK GS+D A F K+ +AMI H + L
Sbjct: 357 QHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEAL--SLF 414
Query: 231 SNEENEYGTALDCSCDLEFLE-QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+ +E G A D+ F+ VH ++ G L D++ +L + P + ++
Sbjct: 415 QHMSDEGGGAR--PNDITFVGLLSACVHAGLVDEGYRL-FDMMSTLFGLV---PKIEHYS 468
Query: 290 AMISGYAKNGYAEEAVKLFPK 310
M+ A+ G+ EA L K
Sbjct: 469 CMVDLLARAGHLYEAWDLIRK 489
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 111/427 (25%), Positives = 166/427 (38%), Gaps = 110/427 (25%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNV 134
L L +++G +HGF+ K GL + + LI L C + Q +
Sbjct: 132 LKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDS 191
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
N+MI GY K G E A +LF + E +N + N+++ VD+A
Sbjct: 192 VSYNSMIDGYVKCGSTESARELFD------LMPEEMKNLISWNSMISGYAQTSDGVDIAS 245
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
F DKD++ ++MI GY H A FD + + + T +D L F+ Q
Sbjct: 246 KLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQ 305
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--- 309
K + M +V +N+MI+GY +N Y EA+++F
Sbjct: 306 AKTLFDQMP--------------------HRDVVSYNSMIAGYVQNRYNMEALEIFSDME 345
Query: 310 --------------------------KWMD--YYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
K MD YI + ++ + LIDMY+KCGS+
Sbjct: 346 KESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSI 405
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
A + F +K + +AM G +HGLGE + + I
Sbjct: 406 QHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNAC 465
Query: 383 -----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
RKH IEPR QHY +VD+L+R+G A I MPIE +
Sbjct: 466 SHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVI 525
Query: 426 RRALLSA 432
R L+A
Sbjct: 526 WRTFLAA 532
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 139/331 (41%), Gaps = 65/331 (19%)
Query: 147 NGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
N +A+ A K M Y+ ++ + V T L+DMYAKCG + LA F+ K
Sbjct: 233 NLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKT 292
Query: 205 VVMRSAMIVG----YGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
VV +AMI G L E A FD + + + L ++Q + M
Sbjct: 293 VVSWTAMIAGCIRSNRLEEARAL--FDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM 350
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
G+ ++SL ++C ++G G KW+ YI K
Sbjct: 351 RTSGVRPTKVTIVSLLSLC-----------AVAGALDLG----------KWVHSYIDKER 389
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ I+NT L+DMYAKCG ++ A F + +D+ M +A+ G+ +HG GEE +F
Sbjct: 390 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 449
Query: 381 HIRKHGIEPRH------------------------------------QHYARVVDLLARA 404
+ + G++P +HY +VDLL RA
Sbjct: 450 EMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRA 509
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G + A + I +MPI+ V AL++A ++
Sbjct: 510 GLLDEAHEMIKSMPIKPNTIVWGALVAACRL 540
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 142/387 (36%), Gaps = 86/387 (22%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAV 154
DL LEQ K +H +IK L I L N +I+ Y K A+
Sbjct: 52 DLSTLEQTKQIHAHIIKT--HFHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNAL 109
Query: 155 KLFPKW--MDY----------------------------YIGKSEYRNNVIVNTVLIDMY 184
++ + MD+ ++ K +V V L+ MY
Sbjct: 110 NVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMY 169
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS-----------NE 233
+C V+ A + FD+ +++DVV S MI S FD L
Sbjct: 170 GECACVEYARLVFDKMMERDVVSWSTMI-----RSLSRNKEFDMALELIREMNFMQVRPS 224
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIK------LGLELESDLLISLTAVCRY------ 281
E + ++ D + GK +H ++I+ +G+ + LL + A C +
Sbjct: 225 EVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALL-DMYAKCGHLGLARQ 283
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335
Q V W AMI+G ++ EEA LF S +V++ T ++ Y
Sbjct: 284 LFNGLTQKTVVSWTAMIAGCIRSNRLEEARALF---------DSTQNRDVMIWTAMLSAY 334
Query: 336 AKCGSVDLAPMFFD-------RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
A+ +D A FD R +V ++ G LG+ WV +I K +E
Sbjct: 335 AQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGK--WV-HSYIDKERVE 391
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIM 415
+VD+ A+ G N A + +
Sbjct: 392 VDCILNTALVDMYAKCGDINAAGRLFI 418
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 132/291 (45%), Gaps = 54/291 (18%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWS 221
++ ++++ ++ +N +LI MY+KCGS++ A F DKDVV +AMI GY LH +
Sbjct: 125 HMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQE 184
Query: 222 AFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
A F +GL N +N + + L LE G+ +H + K G E + S LI
Sbjct: 185 AADLFYQMQREGLKPN-QNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALI 243
Query: 274 SLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW---------- 311
++ C + NV W AMISGY ++G + EA+ LF K
Sbjct: 244 NMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKV 303
Query: 312 --------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ YI ++ V+V LI MY++CGS+ A FD
Sbjct: 304 SFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNL 363
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ +AM GYG GL EE + LF + + G +P YA ++ + A
Sbjct: 364 RSLNRTTWNAMIAGYG-EGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICA 413
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 133/593 (22%), Positives = 220/593 (37%), Gaps = 163/593 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRT------- 54
+ PN + +L AC L G ++H I G LV ++ R
Sbjct: 298 IQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANAR 357
Query: 55 IVFLDLYHLWSRTEWSAF--GSFDGLLSN---------------EENEYGTALDCSCDLE 97
VF +L L +RT W+A G +GL+ ++ Y + L D
Sbjct: 358 QVFDNLRSL-NRTTWNAMIAGYGEGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRA 416
Query: 98 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMIS 142
L++GK +H + G + + + LIS+ A C + NV NA IS
Sbjct: 417 DLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFIS 476
Query: 143 GYAKNGYAEEAVKLF------------------------PKWMD---YYIGKSEY----R 171
++ +EA + F P+ ++ Y GK
Sbjct: 477 CCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLS 536
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL 229
NN + N LI MY +CG++ A F R +D+ +AMI H SAF F
Sbjct: 537 NNHVAN-ALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKY 595
Query: 230 LSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV------- 278
S ++ + L +LE L+ G+++HG + K G + +L +L +
Sbjct: 596 RSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSL 655
Query: 279 --------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+ +V WNAM++ YA + ++A+KLF
Sbjct: 656 RDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNAC 715
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
K + + ++ + V+ LI+MY++CG + A F++ L +D+ +
Sbjct: 716 ARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSWN 775
Query: 361 AMTVGYGLHGLG-----------------------------------EEGWVLFHHIRKH 385
A+ GY +G G E+ + I+K
Sbjct: 776 ALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAFDFLESIKKE 835
Query: 386 -GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM 437
+EP QHYA +V L RAG A +FI + E + +LL A +I +
Sbjct: 836 WNMEPSEQHYAYMVAALGRAGLLKEAEEFIEEISAESAALMWESLLVACRIHL 888
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 48/232 (20%)
Query: 250 LEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLWNAMISG 294
L +GK VH M + + +++LIS+ + C +V WNAMISG
Sbjct: 116 LAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISG 175
Query: 295 YAKNGYAEEAVKLF------------------------PKWMDY------YIGKSEYRNN 324
YA +G +EA LF P +++ I K+ Y ++
Sbjct: 176 YALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESD 235
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
V V+T LI+MY KCGS++LA F+ +++VV +AM GY HG E LF + +
Sbjct: 236 VNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIR 295
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFK---FIMNMPIELRLSVRRALLSAW 433
GI+P +A ++ K +I +E + V AL+S +
Sbjct: 296 SGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMY 347
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/449 (22%), Positives = 169/449 (37%), Gaps = 126/449 (28%)
Query: 17 LKACVALPSLLMGPRVHGQIFSLGF----------LVCY-----------LFDGLFDRTI 55
L+ CV SL G +VH + S F + Y +F + D+ +
Sbjct: 107 LQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDV 166
Query: 56 V----FLDLYHLWSRTEWSAFGSF----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 107
V + Y L R + +A + +GL N+ N + + L LE G+ +H
Sbjct: 167 VSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQ-NTFISILSACQSPIALEFGEQIHS 225
Query: 108 FMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 167
+ K G Y+ +V + A+I+ Y K G E A K+F + +
Sbjct: 226 RIAKAG----------------YESDVNVSTALINMYCKCGSLELARKVFNEMRE----- 264
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
NV+ T +I Y + G A F + + + +F S
Sbjct: 265 ----RNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKV-----------SFASIL 309
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPN 284
G +N + L +G +H ++ + GLE E + LIS+ + C N
Sbjct: 310 GACTNPND--------------LGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLAN 355
Query: 285 V------------TLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
T WNAMI+GY + G EEA +LF
Sbjct: 356 ARQVFDNLRSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICAD 414
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
K + I + ++ ++ V T LI MYAKCGS + A F++ +++V+ +A
Sbjct: 415 RADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAF 474
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391
H LG+E + F +R+ + P H
Sbjct: 475 ISCCCRHDLGKEAFQAFKQMRRDDVNPDH 503
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 118/488 (24%), Positives = 186/488 (38%), Gaps = 141/488 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
Y + L+ LE GK+VH ++ G + + +S + + Y
Sbjct: 170 YSAIIQSCIGLDSLELGKMVHAQIVMRGFA--THIFVSTSLLNMYAKLGSIEDSYWVFNM 227
Query: 131 --QPNVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG 166
+ N NAMISG NG EA LF K +D +G
Sbjct: 228 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG 287
Query: 167 KSEYRN---------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR--SAMIVGY 215
K E +N NV+V T LIDMY+KCGS+ A FD V +AMI GY
Sbjct: 288 K-EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGY 346
Query: 216 GLHEWS--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE- 268
S A + + N + Y + + + L+ G++VHG ++K GL+L
Sbjct: 347 SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV 406
Query: 269 ---SDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF----- 308
++ + + C + + ++ W +++ Y+++ EEA+ F
Sbjct: 407 VSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMRE 466
Query: 309 ----PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
P + + K+ + + LIDMYAKCGS+
Sbjct: 467 EGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITE 526
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE--------------- 388
A FD+ + D+V +A+ GY HGL E+ LF + GI+
Sbjct: 527 AGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 586
Query: 389 ---------------------PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
P +HYA ++DLL R G + A +FI MP+E V +
Sbjct: 587 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQ 646
Query: 428 ALLSAWKI 435
LL ++
Sbjct: 647 TLLGGCRV 654
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 112/278 (40%), Gaps = 59/278 (21%)
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN----EENE 236
+Y+KC A FD ++V + MIVG H + F F +L++ ++
Sbjct: 110 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 169
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 281
Y + L+ LE GK+VH ++ G + + +S + + Y
Sbjct: 170 YSAIIQSCIGLDSLELGKMVHAQIVMRGFA--THIFVSTSLLNMYAKLGSIEDSYWVFNM 227
Query: 282 --QPNVTLWNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG 317
+ N WNAMISG NG EA LF K +D +G
Sbjct: 228 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG 287
Query: 318 KSEYRN---------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR--SAMTVGY 366
K E +N NV+V T LIDMY+KCGS+ A FD V +AM GY
Sbjct: 288 K-EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGY 346
Query: 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404
G +E L+ + ++GI Y V + +A +
Sbjct: 347 SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAAS 384
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 51/201 (25%)
Query: 9 NGCTPPL-----VLKACVALPSLLMGPRVHGQIFSLG--------------------FL- 42
NG T L V A A SL G VHG + G FL
Sbjct: 365 NGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLE 424
Query: 43 -VCYLFDGLFDRTIV-FLDLYHLWSRTEW--SAFGSF-----DGLLSNEENEYGTALDCS 93
V +FD + +R IV + L +S++ A +F +G N+ + C+
Sbjct: 425 DVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCA 484
Query: 94 CDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLRN 138
L FLE G+ VHG + K GL+ E LI + A C P++
Sbjct: 485 -SLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWT 543
Query: 139 AMISGYAKNGYAEEAVKLFPK 159
A+ISGYA++G E+A++LF +
Sbjct: 544 AIISGYAQHGLVEDALQLFRR 564
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 161/403 (39%), Gaps = 116/403 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------- 166
N+MISGY NG E + ++ + M Y+G
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMM--YLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277
Query: 167 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
KS + + + L+DMY+KCG +D A F++ +++VV ++MI GY + G
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY-----TRDGR 332
Query: 226 FDG---LLSNEENEYGTALDC--------SCDLE-FLEQGKIVHGFMIKLGLELE---SD 270
DG LL E E G LD +C L+ GK VH ++ +E +
Sbjct: 333 SDGAIKLLQQMEKE-GVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCN 391
Query: 271 LLISLTAVCRYQ------------PNVTLWNAMISGYAKNGYAEEAVKLFP--------- 309
L+ + A C ++ WN MI + V P
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACV--LPACASLSALE 449
Query: 310 --KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
K + YI ++ Y ++ V L+D+Y KCG + LA + FD KD+V + M GYG
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509
Query: 368 LHGLGEEGWVLFHHIRKHG------------------------------------IEPRH 391
+HG G E F+ +R G IEP+
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HYA +VDLL+R G + A++F+ +PI ++ ALL +
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCR 612
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 136/349 (38%), Gaps = 90/349 (25%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---------- 128
E YG+ L L+ GK VH + + ++ L L+S A C
Sbjct: 98 ETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVF 157
Query: 129 --RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
+ NV L N M+S YAK G +E++ LF ++++ +
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIE 197
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD-----GLLSNEENEYG 238
+ A FD+ D+DV+ ++MI GY GL E G + G+ +
Sbjct: 198 GKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTE-RGLGIYKQMMYLGIDVDLATIIS 256
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQP 283
+ C+ + L GK VH IK E S+ L+ + + C +
Sbjct: 257 VLVGCA-NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
NV W +MI+GY ++G ++ A+KL K +
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH 375
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
YI + +N+ V L+DMYAKCGS++ A F + KD++ + M
Sbjct: 376 DYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTM 424
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 35/171 (20%)
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---------- 279
E YG+ L L+ GK VH + + ++ L L+S A C
Sbjct: 98 ETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVF 157
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+ NV LWN M+S YAK G +E++ LF ++++ +
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFK--------------------IMVEKGIE 197
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+ A FD+ D+DV+ ++M GY +GL E G ++ + GI+
Sbjct: 198 GKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 119/492 (24%), Positives = 200/492 (40%), Gaps = 151/492 (30%)
Query: 70 SAFGSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
+A G F ++S++ + L +E L G+ VH F++K GL
Sbjct: 128 NAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGL----------- 176
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
+++ N++++ YAK+G A +F D KS N ++++ +
Sbjct: 177 -----SSYISVANSLLNMYAKSGDPVTAKIVF----DRMKLKSTSSWNTMISS-----HM 222
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSNEENE-----YG 238
+ G VDLA + F++ +++DVV +AMI GY H + A F +L + ++
Sbjct: 223 QSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLA 282
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKL--------------------GLELESDLL------ 272
+AL +LE L+ GK +H +I+ G+E+ ++
Sbjct: 283 SALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMIS 342
Query: 273 ----ISLTAVCR-------YQP-----------NVTLWNAMISGYAKNGYAEEAVKLF-- 308
I+ TA+ P +V W AMI GY +NG+ ++A++LF
Sbjct: 343 NLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRS 402
Query: 309 -----PKWMDYYIG-----------------------KSEYRNNVIVNTVLIDMYAKCGS 340
PK +Y + +S ++V V+ LI MYAK GS
Sbjct: 403 MIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGS 462
Query: 341 VDLAPMFFDRT-LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------- 391
++ A F+ +D + ++M + HGLGEE LF + ++GI+P H
Sbjct: 463 INDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522
Query: 392 ----------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
HYA ++DL RAG A FI NMPIE +
Sbjct: 523 ACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDV 582
Query: 424 SVRRALLSAWKI 435
+LL++ K+
Sbjct: 583 IAWGSLLASCKV 594
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 142/313 (45%), Gaps = 58/313 (18%)
Query: 74 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 133
S +L++ + Y + L S + GK +H +IK GL L
Sbjct: 4 SSSQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHL----------------G 47
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
V L N +++ YAK G+ +A ++F D KS + N+I++ YAK G ++ A
Sbjct: 48 VFLMNNLMNFYAKTGFIYDAHRVF----DEMPVKSVFSWNIILSG-----YAKGGRLEEA 98
Query: 194 PMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNE----ENEYGTALDCSCD 246
F+ + D V +AMIVGY G E +A G F ++S++ + L
Sbjct: 99 HRVFEEMPEPDSVSWTAMIVGYNQMGQFE-NAIGMFREMVSDDVPPTQFTLTNVLASCAA 157
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK 306
+E L G+ VH F++K GL +++ N++++ YAK+G A
Sbjct: 158 VECLGIGRKVHSFVVKHGL----------------SSYISVANSLLNMYAKSGDPVTAKI 201
Query: 307 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+F D KS N ++++ + + G VDLA + F++ +++DVV +AM GY
Sbjct: 202 VF----DRMKLKSTSSWNTMISS-----HMQSGLVDLAQVQFEQMIERDVVSWNAMISGY 252
Query: 367 GLHGLGEEGWVLF 379
HG E +F
Sbjct: 253 NQHGFDREALDIF 265
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 28/212 (13%)
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
S +L++ + Y + L S + GK +H +IK GL L
Sbjct: 4 SSSQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHL----------------G 47
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
V L N +++ YAK G+ +A ++F D KS + N+I++ YAK G ++ A
Sbjct: 48 VFLMNNLMNFYAKTGFIYDAHRVF----DEMPVKSVFSWNIILSG-----YAKGGRLEEA 98
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404
F+ + D V +AM VGY G E +F + + P V+ A
Sbjct: 99 HRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAV 158
Query: 405 ---GYSNHAFKFIMNMPIELRLSVRRALLSAW 433
G F++ + +SV +LL+ +
Sbjct: 159 ECLGIGRKVHSFVVKHGLSSYISVANSLLNMY 190
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 148/347 (42%), Gaps = 91/347 (26%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LHEWSAFGSFDGLLSN- 232
V+ LI MYA+CG + A FD KD+V ++MI GY H A G F ++
Sbjct: 164 VSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG 223
Query: 233 -EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------- 279
+ NE + L +L L+ G V F+++ + L LI + C
Sbjct: 224 FQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSAR 283
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------ 309
+ + VT WNAMI+GYA+NG +EEA+KLF
Sbjct: 284 RIFDSMKKKDKVT-WNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASI 342
Query: 310 ------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
K ++ Y + ++++V V T L+DMYAKCGS+D A F +K+ V +AM
Sbjct: 343 GALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMI 402
Query: 364 VGYGLHG-------------------------------------LGEEGWVLFHHIRKH- 385
HG L +EG LFH +
Sbjct: 403 SALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSF 462
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
G+ P+ +HY+ +VDL +RAG+ A+ F+M MP + + ALL A
Sbjct: 463 GLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGA 509
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 159/385 (41%), Gaps = 106/385 (27%)
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYA 145
+G VHG ++K+GLE + + LI A C + + NV ++I GYA
Sbjct: 149 EGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYA 208
Query: 146 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
+ +EAV LF E N V+VN L+DMY KCG++D A FD +D+++
Sbjct: 209 RGDRPKEAVSLF----------FEMLNKVMVNA-LVDMYMKCGAIDAAKRLFDECVDRNL 257
Query: 206 VMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
V+ + ++ Y + E LD E L+QG
Sbjct: 258 VLYNTILSNYARQGLA-------------REALAILD-----EMLQQGP----------- 288
Query: 266 ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
D + L+A+ V L+ G +GY W+ YI K+ ++
Sbjct: 289 --RPDRVTMLSAISASAQLVDLF----YGKVCHGY----------WVHTYIEKNGIPCDM 332
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE------------ 373
+NT L+DM+A+CG A F++ ++DV +A + G GE
Sbjct: 333 RLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQ 392
Query: 374 -----------------------EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
+G +F + HGI P+ +HY +VDLL RAG A
Sbjct: 393 GVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREA 452
Query: 411 FKFIMNMPIELRLSVRRALLSAWKI 435
F I +MP+E V +LL+A ++
Sbjct: 453 FDLIKSMPMEPNDVVWGSLLAACRV 477
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 144/539 (26%), Positives = 221/539 (41%), Gaps = 149/539 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYL-FDG 49
MQ A V + T V ++C L +L +G ++HG F L Y+ +
Sbjct: 266 MQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNN 325
Query: 50 LFDRTIVF-------LDLYHL----WSRTE--WSAFGSF-----DGLLSNEENEYGTALD 91
L D +F L Y+ ++R++ A G F GL +E + G
Sbjct: 326 LSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRA 385
Query: 92 CSC---DLEFLEQGKIVHGFMIKLGLELESDLLIS------------LTAVCRYQPNVTL 136
C+ DLE L+ VHG +K +S++ ++ L C +
Sbjct: 386 CAVIKGDLEGLQ----VHGLSMKS--LCQSNICVANAILDMYGKCGALVEACLVFEEMVS 439
Query: 137 R-----NAMISGYAKNGYAEEAVKLFPKWM-------DYYIGKS---------------E 169
R NA+I+ + +NG E+ + LF WM D + S E
Sbjct: 440 RDAVSWNAIIAAHEQNGNEEKTLSLFV-WMLQSGMEPDEFTYGSVLKACAGWQALNCGME 498
Query: 170 YRNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
N +I V LIDMY+KCG ++ A DR ++ VV +A+I G+ L +
Sbjct: 499 IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQ 558
Query: 221 S--AFGSFDGLLS---NEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
S A +F +L + +N Y T LD +L +E GK +H +IK EL+SD IS
Sbjct: 559 SEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIK--KELQSDAYIS 616
Query: 275 LTAVCRYQ---------------PN--VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
T V Y PN WNAM+ GYA++G EEA+K+F Y+
Sbjct: 617 STLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFE-----YMQ 671
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
+ N + + + CG + GL E+G
Sbjct: 672 LENVKPN---HATFLAVLRACGHM----------------------------GLVEKGLH 700
Query: 378 LFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
FH + +G++P+ +HY+ VVD++ R+G + A + I MP E + R LLS KI
Sbjct: 701 YFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKI 759
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/370 (21%), Positives = 140/370 (37%), Gaps = 79/370 (21%)
Query: 70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 129
S F S+ + ++ +CS D + L GK H MI +
Sbjct: 30 SPFSSYQATPTKKKTFSHIFQECS-DRKALCPGKQAHARMI----------------LTE 72
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
++P V + N +I Y K E A K+F R+ V N +L YA G
Sbjct: 73 FKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM--------PQRDTVSWNAMLFG-YAGRGD 123
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN-------EENEYGTALD 242
+ +A FD ++DVV +++I GY LH D L + + L
Sbjct: 124 IGVAQKLFDAMPERDVVSWNSLISGY-LHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLK 182
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTL 287
LE G +HG +K+G + + L+ + A C+ + N
Sbjct: 183 SCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVS 242
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------ 317
W+A+I+G +N ++LF + +G
Sbjct: 243 WSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHAL 302
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
K+++ +V++ T +DMY KC ++ A F+ + ++ +A+ VGY G E
Sbjct: 303 KTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALG 362
Query: 378 LFHHIRKHGI 387
+F ++K G+
Sbjct: 363 MFRLLQKSGL 372
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 124/328 (37%), Gaps = 85/328 (25%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFS--LG---FLVCYLFD-----GLFDRTIVF 57
P+ T VLKAC +L G +H +I LG F+ L D G+ ++
Sbjct: 475 PDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKL 534
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEEN------------------EYGTALDCSCDLEFL 99
D + W+A S L E Y T LD +L +
Sbjct: 535 HDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTV 594
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNVTLR--NAMIS 142
E GK +H +IK EL+SD IS T V Y PN NAM+
Sbjct: 595 ELGKQIHAQIIKK--ELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVC 652
Query: 143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 202
GYA++G EEA+K+F Y+ + N + + + CG + L
Sbjct: 653 GYAQHGLGEEALKIFE-----YMQLENVKPN---HATFLAVLRACGHMGL---------- 694
Query: 203 KDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL-EQGKIVHGFMI 261
V GLH + + S GL E+ SC ++ + G++ +
Sbjct: 695 ----------VEKGLHYFHSMLSNYGLDPQLEHY-------SCVVDIMGRSGQVSKALEL 737
Query: 262 KLGLELESDLLI--SLTAVCRYQPNVTL 287
G+ E+D +I +L ++C+ NV +
Sbjct: 738 IEGMPFEADAVIWRTLLSICKIHGNVEV 765
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 79/260 (30%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+E++ V V LI MY KC ++ A FD +D V W+A
Sbjct: 71 TEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTV------------SWNA----- 113
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
++ G+ + + + L ++ + +V
Sbjct: 114 ---------------------------MLFGYAGRGDIGVAQKLFDAMP-----ERDVVS 141
Query: 288 WNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG-------- 317
WN++ISGY NG + + +F D+ G
Sbjct: 142 WNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAV 201
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
K + +V+ + L+DMYAKC +D + FF +K+ V SA+ G + G
Sbjct: 202 KMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLE 261
Query: 378 LFHHIRKHGIEPRHQHYARV 397
LF ++K G+ +A V
Sbjct: 262 LFKEMQKAGVGVSQSTFASV 281
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 164/383 (42%), Gaps = 84/383 (21%)
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
++GK +H ++K GL ++ + + ++IS YA+NG E+A K+F
Sbjct: 95 QEGKQIHAQILKYGLTVD----------------LHVHTSLISMYAQNGIVEDAHKVFDT 138
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--- 216
S +R+ V+ T +I YA G++D A FD KDVV +AMI GY
Sbjct: 139 --------SSHRD-VVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIG 189
Query: 217 -----LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
L ++ D + +E+ T L +E G+ +H ++ G L
Sbjct: 190 RYKEALELFNEMMKMD--VKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKL 247
Query: 272 ---LISLTAVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP------ 309
LI L + C +Y+ +V WN +I GYA + +EA+ +F
Sbjct: 248 VNALIDLYSKCGEMERAHGLFEGLQYK-DVISWNTLIGGYAYINHHKEALLVFQEMLKLG 306
Query: 310 ------------------------KWMDYYIGKS--EYRNNVIVNTVLIDMYAKCGSVDL 343
+W+ YI K N + T LIDMYAKCG+++
Sbjct: 307 ETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEA 366
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR 403
A FD L+K + +AM G+ +HG + + L ++K GIEP + ++ +
Sbjct: 367 ANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSH 426
Query: 404 AGYSNHAFKFIMNMPIELRLSVR 426
AG S+ K +M ++ R+ +
Sbjct: 427 AGLSDLGRKIFKSMTLDYRIEPK 449
>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
Length = 1161
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 149/354 (42%), Gaps = 93/354 (26%)
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG-----YGLHEWSAFGSF-D 227
V V L+DMY+KCG ++ A F R +D+ ++ +AMI G YG FG +
Sbjct: 513 VEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQE 572
Query: 228 GLLSNEENEYG-TALDCSCDLE-FLEQGKIVHGFMIKLGLELESDL-----LISLTAVCR 280
+ +E+ T+L +C + GK +HGF+++ G S L+ L C
Sbjct: 573 ANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCG 632
Query: 281 Y------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------ 310
Y + + W+++I GYA+ G EA+ LF +
Sbjct: 633 YLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIG 692
Query: 311 -WMDYYIGKSEYR------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+ D+ + + + ++N+V +DMY KCG VD A F KDV+
Sbjct: 693 VFADFALLRQGKQMQALAVKLPSGLETSVLNSV-VDMYLKCGLVDEAEKCFAEMQLKDVI 751
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKH-------------------------------- 385
+ + GYG HGLG++ +F+ + +H
Sbjct: 752 SWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 811
Query: 386 ----GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GI+PR +HYA VVDLL RAG A I MPI+ + + + LLS ++
Sbjct: 812 LETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 865
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 57/287 (19%)
Query: 154 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
V P + D +++ N+I + LIDMY KC +A FD +++VV SA++
Sbjct: 392 VSFGPDYTDDPESETKPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMS 451
Query: 214 GYGLH-----EWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266
G+ L+ S F G+ NE + T L L LE+G +HGF +K+G E
Sbjct: 452 GHVLNGDLKGSLSLFSEMGRQGIYPNEFT-FSTNLKACGLLNALEKGLQIHGFCLKIGFE 510
Query: 267 LESDL---LISLTAVC----------RYQPNVTL--WNAMISGYAKNGYAEEAVKLFPKW 311
+ ++ L+ + + C R + +L WNAMI+G+ GY +A+ F
Sbjct: 511 MMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM 570
Query: 312 MD------------------------YYIGKSEY----------RNNVIVNTVLIDMYAK 337
+ Y GK + ++ + L+D+Y K
Sbjct: 571 QEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK 630
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
CG + A FD+ +K ++ S++ +GY G E LF +++
Sbjct: 631 CGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQE 677
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
V P + D +++ N+I + LIDMY KC +A FD +++VV SA+
Sbjct: 392 VSFGPDYTDDPESETKPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMS 451
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEP 389
G+ L+G + LF + + GI P
Sbjct: 452 GHVLNGDLKGSLSLFSEMGRQGIYP 476
>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
Length = 941
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 137/591 (23%), Positives = 221/591 (37%), Gaps = 164/591 (27%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIV 56
AP+GCT VLKAC A G VHG +G + Y GL D +
Sbjct: 161 APDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALR 220
Query: 57 FLDLYHLWSR--TEWS--------------AFGSFDGLLSN--EENEYGTA--LDCSCDL 96
+ +R W+ A F G+ S N Y + L +L
Sbjct: 221 VFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAEL 280
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-QPNVTLR-------------NAMIS 142
L G+ +H ++K G EL L +Y + + LR N+M+S
Sbjct: 281 GLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLS 340
Query: 143 GYAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYRN 172
Y +N + EA+ F + + + Y K
Sbjct: 341 CYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHT 400
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
++ V L+DMY KCGS++ + F+ +D + + ++ + + S ++
Sbjct: 401 DLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFA--QSSRHSEALEMILE 458
Query: 233 EENE--------YGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVCRY- 281
+ E G+ L+ C L+ + K VH + I+ GL + + LI + C
Sbjct: 459 LQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEF 518
Query: 282 -----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI-------------- 316
+ ++ W +MI+ NG AV LF + I
Sbjct: 519 DHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAI 578
Query: 317 --------GKSEY-----RNNVI---VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
GK + RN I V + L+DMY+ CGS++ A F+R KDVV+ +
Sbjct: 579 AGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWT 638
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------------- 391
AM G+HG G++ LF + + G+ P H
Sbjct: 639 AMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSK 698
Query: 392 -------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA VVD+L R+G + A++FI MP++ + +V ALL A ++
Sbjct: 699 YRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRV 749
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 113/292 (38%), Gaps = 74/292 (25%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------------GLHEWSAF 223
T L+ MY +CG VD A F+ + V +A++ Y + +A
Sbjct: 99 TKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAP 158
Query: 224 GSF-DGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAV 278
GS DG L++ G D C G VHG +K+GL+ L ++ LI + A
Sbjct: 159 GSAPDGCTLASVLKACGAEGDGRC-------GGEVHGLAVKVGLDKSTLVANALIGMYAK 211
Query: 279 C--------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN- 323
C + +V WN+++SG +NG EA+ LF + Y +
Sbjct: 212 CGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSV 271
Query: 324 -----------------------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
N+ N +L+ MYAK G VD A F + +K
Sbjct: 272 AVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLV-MYAKYGRVDSALRVFGQIAEK 330
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
D + ++M Y + E F + +HG +P H A VV L + G+
Sbjct: 331 DYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDH---ACVVSLSSALGH 379
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 170/448 (37%), Gaps = 160/448 (35%)
Query: 99 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLRNAMISG 143
G +HG KLG + + LI++ A CR P+ N +I G
Sbjct: 137 FNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDG 196
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
Y +NG+ ++A++LF + + ++ + Y +
Sbjct: 197 YCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAID 256
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
+ T LI+MYA CG++DLA +D K +++ +AM+ GY
Sbjct: 257 SHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYA----------------- 299
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
L ++ + + MI E DL VC W+AMIS
Sbjct: 300 ------------KLGMVKDARFIFDQMI------ERDL------VC--------WSAMIS 327
Query: 294 GYAKNGYAEEAVKLFPK------------------------------WMDYYIGKSEYRN 323
GYA++ +EA+KLF + W+ Y+ +S +
Sbjct: 328 GYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGR 387
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH-------------- 369
+ VN LIDMYAKCG++ A F+ K+V+ S+M + +H
Sbjct: 388 ALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMK 447
Query: 370 ---------------------GLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYS 407
GL EEG LF I +HGI P +HY +VDL RA +
Sbjct: 448 EVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFL 507
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
A + I MP + + +L+SA ++
Sbjct: 508 RKAIELIETMPFAPNVIIWGSLMSACQV 535
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 55/219 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPK------------------------------WMDYYIGK 167
+AMISGYA++ +EA+KLF + W+ Y+ +
Sbjct: 323 SAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDR 382
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
S + + VN LIDMYAKCG++ A F+ K+V+ S+MI + +H SA
Sbjct: 383 SGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKL 442
Query: 226 FD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK--------------LGLE 266
F + N G C +E+G+ + MI + L
Sbjct: 443 FRRMKEVNIEPNGVTFIGVLYACG-HAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLY 501
Query: 267 LESDLL---ISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
++ L I L + PNV +W +++S +G AE
Sbjct: 502 CRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAE 540
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/451 (24%), Positives = 181/451 (40%), Gaps = 116/451 (25%)
Query: 105 VHGFMIKLGLE---------LESDLLISLTAVCR------YQPNVTLRNAMISGYAKNGY 149
+H F IK GL+ L++ L A R + + NAM+ G +K G
Sbjct: 371 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 430
Query: 150 AEEAVKLFPKW------------MDYYIGKSEYRN--NVIVNTVLIDMYAKCGSVDLAPM 195
+A++LF + Y +S + NV VN L+D Y+KC +D
Sbjct: 431 HTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRR 490
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGL-LSNEENEYGTALDCSCDLEF 249
FD ++D V + +I Y ++ +A F L + Y T L + L
Sbjct: 491 LFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPD 550
Query: 250 LEQGKIVHGFMIKLGLELES---DLLISLTAVC------------RYQPNVTLWNAMISG 294
+ GK +H ++ LGL E + LI + + C R + + W A+I+G
Sbjct: 551 VHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 610
Query: 295 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 324
Y +NG EEA++LF + + Y+ +S Y+++
Sbjct: 611 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 670
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG---------------LH 369
V +VL+DMYAKCG +D A FD +++ + +A+ Y LH
Sbjct: 671 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 730
Query: 370 --------------------GLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSN 408
GL +E FH ++ ++ I P +HYA V+D L R G +
Sbjct: 731 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 790
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKIPMQQ 439
K ++ MP + + ++L + +I Q
Sbjct: 791 QVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 821
>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 788
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 134/528 (25%), Positives = 205/528 (38%), Gaps = 141/528 (26%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----------FLVCYLFDGLFDRTIV 56
P+ T P+VLK C L +L G H LG L Y GL D
Sbjct: 106 PDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAER 165
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
D W++ DG +SN GT L C E E LE+
Sbjct: 166 VFDGMPARDVVTWNSM--VDGYVSNG---LGT-LALVCFREMHE------------ALEV 207
Query: 117 ESD---LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 173
+ D ++ +L A C L +A++ G + + Y+ + ++
Sbjct: 208 QHDGVGIIAALAACC-------LESALMQG---------------REVHAYVIRHGMEHD 245
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLS 231
V V T ++DMY KCG + A F + VV + MI GY L+E AF F + +
Sbjct: 246 VKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKA 305
Query: 232 N-EENEYGTALD--CSC-DLEFLEQGKIVHGFMIKLG----LELESDLLISLTAVCRYQP 283
+ E TA++ +C E G+ VHG++ + + LE+ LL + V + +
Sbjct: 306 EGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKS 365
Query: 284 N-----------VTLWNAMISGYAKNGYAEEAVKLF------PKWMDY------------ 314
+ + WN MI+ Y EA+ LF P + DY
Sbjct: 366 SEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVL 425
Query: 315 ------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
YI + Y N ++ ++ MYA+CG V + FD+ KDV+ + M
Sbjct: 426 LGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTM 485
Query: 363 TVGYGLHGLG-----------------------------------EEGWVLFHHI-RKHG 386
+GY +HG G +EGW F+ + R +G
Sbjct: 486 IMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYG 545
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ P+ +HY + DLL RAG +FI NMPI+ V +LL+A +
Sbjct: 546 MIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWGSLLTASR 593
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 115/494 (23%), Positives = 198/494 (40%), Gaps = 156/494 (31%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR-------------Y 130
+L S + L +GK +H +M+ G L S L LI++ + C +
Sbjct: 42 ASLQASAHHKNLSKGKEIHSYMLINGF-LNSPLSITSLINMYSKCNQMNFALSIFSDPTH 100
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
+ NV NA+ISG+ NG+ EE + + K + + ++
Sbjct: 101 EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKKIHG 160
Query: 171 -------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+V + + L++ Y K G ++ A + F+ +DVV+ +AM+ GY +
Sbjct: 161 LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGY-----AQI 215
Query: 224 GSFDGLLS-----NEENEYGTALDCSCDLEF------LEQGKIVHGFMIKLGLE---LES 269
G F+ +L N+E+ + + L L G+I+HGF +K+G + S
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275
Query: 270 DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
+ LI + C+ + ++ WN+++S + + G + ++L +D +G
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRL----LDRMLG 331
Query: 318 KSEYRNNVIVNTVL----------------------------------------IDMYAK 337
+ V V TVL IDMYAK
Sbjct: 332 AGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAK 391
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI--------------- 382
CGS+ A + F+R +KDV + M +GYG+HG G E +F +
Sbjct: 392 CGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGV 451
Query: 383 ---------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
K+ + P +HY V+D+L RAG + A++ + MPIE
Sbjct: 452 LSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEA 511
Query: 422 RLSVRRALLSAWKI 435
V RALL+A ++
Sbjct: 512 NPVVWRALLAACRL 525
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 118/488 (24%), Positives = 186/488 (38%), Gaps = 141/488 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
Y + L+ LE GK+VH ++ G + + +S + + Y
Sbjct: 224 YSAIIQSCIGLDSLELGKMVHAQIVMRGFA--THIFVSTSLLNMYAKLGSIEDSYWVFNM 281
Query: 131 --QPNVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG 166
+ N NAMISG NG EA LF K +D +G
Sbjct: 282 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG 341
Query: 167 KSEYRN---------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR--SAMIVGY 215
K E +N NV+V T LIDMY+KCGS+ A FD V +AMI GY
Sbjct: 342 K-EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGY 400
Query: 216 GLHEWS--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE- 268
S A + + N + Y + + + L+ G++VHG ++K GL+L
Sbjct: 401 SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV 460
Query: 269 ---SDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF----- 308
++ + + C + + ++ W +++ Y+++ EEA+ F
Sbjct: 461 VSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMRE 520
Query: 309 ----PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
P + + K+ + + LIDMYAKCGS+
Sbjct: 521 EGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITE 580
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE--------------- 388
A FD+ + D+V +A+ GY HGL E+ LF + GI+
Sbjct: 581 AGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 640
Query: 389 ---------------------PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
P +HYA ++DLL R G + A +FI MP+E V +
Sbjct: 641 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQ 700
Query: 428 ALLSAWKI 435
LL ++
Sbjct: 701 TLLGGCRV 708
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 112/278 (40%), Gaps = 59/278 (21%)
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN----EENE 236
+Y+KC A FD ++V + MIVG H + F F +L++ ++
Sbjct: 164 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 223
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 281
Y + L+ LE GK+VH ++ G + + +S + + Y
Sbjct: 224 YSAIIQSCIGLDSLELGKMVHAQIVMRGFA--THIFVSTSLLNMYAKLGSIEDSYWVFNM 281
Query: 282 --QPNVTLWNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIG 317
+ N WNAMISG NG EA LF K +D +G
Sbjct: 282 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMG 341
Query: 318 KSEYRN---------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR--SAMTVGY 366
K E +N NV+V T LIDMY+KCGS+ A FD V +AM GY
Sbjct: 342 K-EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGY 400
Query: 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404
G +E L+ + ++GI Y V + +A +
Sbjct: 401 SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAAS 438
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 51/201 (25%)
Query: 9 NGCTPPL-----VLKACVALPSLLMGPRVHGQIFSLG--------------------FL- 42
NG T L V A A SL G VHG + G FL
Sbjct: 419 NGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLE 478
Query: 43 -VCYLFDGLFDRTIV-FLDLYHLWSRTEW--SAFGSF-----DGLLSNEENEYGTALDCS 93
V +FD + +R IV + L +S++ A +F +G N+ + C+
Sbjct: 479 DVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCA 538
Query: 94 CDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLRN 138
L FLE G+ VHG + K GL+ E LI + A C P++
Sbjct: 539 -SLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWT 597
Query: 139 AMISGYAKNGYAEEAVKLFPK 159
A+ISGYA++G E+A++LF +
Sbjct: 598 AIISGYAQHGLVEDALQLFRR 618
>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g20730-like [Brachypodium distachyon]
Length = 558
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/417 (25%), Positives = 170/417 (40%), Gaps = 122/417 (29%)
Query: 138 NAMISGYAKNGYAEEAVKLF---------PKWMDY---------------------YIGK 167
AM+SGY++NG EA+ LF P Y + K
Sbjct: 81 TAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAK 140
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+ +V V + L+DM+ +CGSV A F KDVV +A++ GL E + +G
Sbjct: 141 GRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALL--RGLVERAQYGDAL 198
Query: 228 GLLSN--------EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT--- 276
GLL + + +G+AL + L +++H +IKLG E ++ S+
Sbjct: 199 GLLPSMLRGAMLPDHFTFGSALKACGAVSVLANVELIHTCIIKLGYWGEKVVIGSIIDAY 258
Query: 277 AVCR------------YQPNVTLWNAMISGYAKN-GYAEEAVKLFPK------------- 310
A CR +P++ A+ISGY+ + ++E+A++LF K
Sbjct: 259 AKCRGLSSARLIYDSICEPDLVSSTALISGYSMDRNHSEDAMELFCKIHRKGLRIDGVLL 318
Query: 311 -----------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+ Y+ K + +V ++ ++DMYAK G A FD
Sbjct: 319 SSLLGLCANVASLRFGTQIHAYMCKRQPMTDVALDNAVVDMYAKAGEFADARRAFDEMPY 378
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------------------- 382
++VV +++ G +G GE+ LF +
Sbjct: 379 RNVVSWTSLITACGKNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSACGHSGLTSKGMEY 438
Query: 383 -----RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
K+GI+PR +HY+ +DLLAR G A+K + N+ IE S+ A+L A K
Sbjct: 439 FTSMMSKYGIDPRAEHYSSAIDLLARGGQLKDAWKLVQNIDIEPNSSMFGAMLGACK 495
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 101/265 (38%), Gaps = 52/265 (19%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN- 232
++T L+ YAK G V A FD + VV +AM+ GY + + A F +L++
Sbjct: 48 MSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGYSRNGQTREALDLFTLMLASG 107
Query: 233 ---EENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVCRY----- 281
+ YG+ + G+ VH + K +G L+ + C
Sbjct: 108 VRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDVFVQSALMDMHLRCGSVVDAM 167
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------DYY------------- 315
+ +V WNA++ G + +A+ L P + D++
Sbjct: 168 QLFAEMERKDVVAWNALLRGLVERAQYGDALGLLPSMLRGAMLPDHFTFGSALKACGAVS 227
Query: 316 -----------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
I K Y +V +ID YAKC + A + +D + D+V +A+
Sbjct: 228 VLANVELIHTCIIKLGYWGEKVVIGSIIDAYAKCRGLSSARLIYDSICEPDLVSSTALIS 287
Query: 365 GYGL-HGLGEEGWVLFHHIRKHGIE 388
GY + E+ LF I + G+
Sbjct: 288 GYSMDRNHSEDAMELFCKIHRKGLR 312
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%)
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
++T L+ YAK G V A FD + VV +AM GY +G E LF + G
Sbjct: 48 MSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGYSRNGQTREALDLFTLMLASG 107
Query: 387 IEPRHQHYARVVDLLARAG 405
+ P Y V A AG
Sbjct: 108 VRPNQFTYGSVASACAGAG 126
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 144/590 (24%), Positives = 231/590 (39%), Gaps = 161/590 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRT- 54
+ N T P VL+AC L +G RVHG+I GF L Y G D
Sbjct: 95 IQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVVNTALLSVYGELGYLDSAR 154
Query: 55 IVF--LDLYHLWSRTEWSAFGSFDGLLSNEENEYG---------------TALDCSCDLE 97
VF + L L S + + +G ++ + + T ++ +L
Sbjct: 155 KVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGELG 214
Query: 98 FLEQGKIVHGFMIKLGLE----LESDLLI------SLTAVCRYQPNVTLRN-----AMIS 142
L K HG+++K G+E ++S L+ SL + NVT R+ AMIS
Sbjct: 215 VLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMIS 274
Query: 143 GYAKNGYAEEAVKLF---------PKWMDYYI-------------GKSEY----RNNVIV 176
Y GY +EA+ LF P + I GKS + +N++
Sbjct: 275 SYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDA 334
Query: 177 N-----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA----FG 224
N L+++YA DL + + + + +I Y GL + +
Sbjct: 335 NLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRM 394
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVCRY- 281
G + + + + + E L+ G +HG +IK E + LI++ + C Y
Sbjct: 395 QKQGFMPDSFSLASSLSASGNEGE-LQLGLQIHGHVIKRPFMDEYVFNSLINMYSKCGYV 453
Query: 282 ----------QPN-VTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+P V WN+MISG ++NGY+ +A+ LF
Sbjct: 454 DLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQAC 513
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
KW+ + + R + + T L+DMYAKCG + A FD ++ VV S
Sbjct: 514 SHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWS 573
Query: 361 AMTVGYGLHG-----------------------------------LGEEGWVLFHHIRKH 385
++ YG+HG +EG + F+ +R
Sbjct: 574 SLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRDF 633
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GIEP+ +H+ +VDLL+RAG + A++ I MP S+ ALL+ +I
Sbjct: 634 GIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGCRI 683
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 144/590 (24%), Positives = 231/590 (39%), Gaps = 161/590 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRT- 54
+ N T P VL+AC L +G RVHG+I GF L Y G D
Sbjct: 95 IQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVVNTALLSVYGELGYLDSAR 154
Query: 55 IVF--LDLYHLWSRTEWSAFGSFDGLLSNEENEYG---------------TALDCSCDLE 97
VF + L L S + + +G ++ + + T ++ +L
Sbjct: 155 KVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGELG 214
Query: 98 FLEQGKIVHGFMIKLGLE----LESDLLI------SLTAVCRYQPNVTLRN-----AMIS 142
L K HG+++K G+E ++S L+ SL + NVT R+ AMIS
Sbjct: 215 VLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMIS 274
Query: 143 GYAKNGYAEEAVKLF---------PKWMDYYI-------------GKSEY----RNNVIV 176
Y GY +EA+ LF P + I GKS + +N++
Sbjct: 275 SYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDA 334
Query: 177 N-----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA----FG 224
N L+++YA DL + + + + +I Y GL + +
Sbjct: 335 NLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRM 394
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVCRY- 281
G + + + + + E L+ G +HG +IK E + LI++ + C Y
Sbjct: 395 QKQGFMPDSFSLASSLSASGNEGE-LQLGLQIHGHVIKRPFMDEYVFNSLINMYSKCGYV 453
Query: 282 ----------QPN-VTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
+P V WN+MISG ++NGY+ +A+ LF
Sbjct: 454 DLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQAC 513
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
KW+ + + R + + T L+DMYAKCG + A FD ++ VV S
Sbjct: 514 SHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWS 573
Query: 361 AMTVGYGLHG-----------------------------------LGEEGWVLFHHIRKH 385
++ YG+HG +EG + F+ +R
Sbjct: 574 SLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRDF 633
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GIEP+ +H+ +VDLL+RAG + A++ I MP S+ ALL+ +I
Sbjct: 634 GIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGCRI 683
>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/407 (23%), Positives = 164/407 (40%), Gaps = 120/407 (29%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF------------------------------PKW 160
+PN+ +A+I G+A+NGY +EA++L K
Sbjct: 8 KPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKE 67
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-- 218
+ Y+ + + +N V L+D+Y +C + A F K+VV + MIVGY +
Sbjct: 68 IHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGN 127
Query: 219 -------------------EWSAF--GSFDGLLSNEENEYGT-ALDCSCDLEFLEQGKIV 256
W++ G D LL E+ + A D + + ++
Sbjct: 128 VEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLI 187
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD--- 313
G+ LE +L+ + ++PNV WN +ISG+ +NG+ E A++LF +
Sbjct: 188 SGYACCNQLENIQNLIQKMKGD-GFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSL 246
Query: 314 ----YYIG-----------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
Y +G + Y +V + L+DMYAKCGS+ A
Sbjct: 247 RPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQ 306
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------- 391
++R + ++V ++AM Y +HG G+EG LF ++ +G P H
Sbjct: 307 VYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGA 366
Query: 392 --------------------QHYARVVDLLARAGYSNHAFKFIMNMP 418
+HY +VDLL+RAG + A++ + +P
Sbjct: 367 VETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIP 413
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 150/354 (42%), Gaps = 91/354 (25%)
Query: 173 NVIVNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSF 226
+V V L+DMYAKC GSVD + F++ + +V+ +A+I Y G + A F
Sbjct: 90 DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELF 149
Query: 227 DGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC 279
++S + + L +L G+ V+ + +KLG+ + LIS+ A
Sbjct: 150 CKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARS 209
Query: 280 R------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG---------- 317
++ N+ +NA++ GYAKN +EEA LF + D IG
Sbjct: 210 GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL 269
Query: 318 --------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
K Y++N + LI MY++CG+++ A F+ D++V+
Sbjct: 270 SGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVI 329
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHI----------------------------------- 382
++M G+ HG +FH +
Sbjct: 330 SWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSM 389
Query: 383 -RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++HGI PR +HYA +VDLL R+G A +FI +MP+ V R LL A ++
Sbjct: 390 YKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 443
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 108/470 (22%), Positives = 173/470 (36%), Gaps = 166/470 (35%)
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC----------- 128
E +G+AL L L G VH + K + LI + + C
Sbjct: 147 EYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFS 206
Query: 129 -RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD------------------------- 162
+ N+ N++I+ Y +NG A EA+++F + MD
Sbjct: 207 GMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKE 266
Query: 163 ------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
+ +++R+++++ L+DMYAKC V+ A FDR ++VV ++M
Sbjct: 267 GLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSM----- 321
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
V G+ ++ + +T
Sbjct: 322 ---------------------------------------VSGYARAASVKAARFMFSKMT 342
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------PKWMDYY--------------- 315
Q NV WNA+I+GY +NG EEA++LF W +Y
Sbjct: 343 -----QRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADL 397
Query: 316 -IGKSEY--------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+G+ + +++ V LIDMY KCGS++ F++ ++D V +
Sbjct: 398 LLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWN 457
Query: 361 AMTVGYGLHGLG-----------------------------------EEGWVLFHHIRKH 385
A+ VGY +G G EEG F + +H
Sbjct: 458 AIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEH 517
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G+ P HY +VDLL RAG N A I MP+ V +LL+A K+
Sbjct: 518 GLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKV 567
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 79/265 (29%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+++ + + LID+Y KC +D A FDR ++ +++I
Sbjct: 44 TQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLI--------------- 88
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
+L+ FL++ + G M +P+
Sbjct: 89 SVLTKSG--------------FLDEAARLFGSMP--------------------EPDQCS 114
Query: 288 WNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIG-------- 317
WN+M+SG+A++ EE+++ F K MD +G
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS Y +V + + LIDMY+KCGSV A F +++++V +++ Y +G E
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLA 402
+F + G+EP A VV A
Sbjct: 235 VFVRMMDSGLEPDEVTLASVVSACA 259
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 150/354 (42%), Gaps = 91/354 (25%)
Query: 173 NVIVNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSF 226
+V V L+DMYAKC GSVD + F++ + +V+ +A+I Y G + A F
Sbjct: 85 DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELF 144
Query: 227 DGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC 279
++S + + L +L G+ V+ + +KLG+ + LIS+ A
Sbjct: 145 CKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARS 204
Query: 280 R------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG---------- 317
++ N+ +NA++ GYAKN +EEA LF + D IG
Sbjct: 205 GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLL 264
Query: 318 --------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
K Y++N + LI MY++CG+++ A F+ D++V+
Sbjct: 265 SGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVI 324
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHI----------------------------------- 382
++M G+ HG +FH +
Sbjct: 325 SWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSM 384
Query: 383 -RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++HGI PR +HYA +VDLL R+G A +FI +MP+ V R LL A ++
Sbjct: 385 YKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 438
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 158/371 (42%), Gaps = 87/371 (23%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKN 147
+ L L ++ GK++HG +I++G+E V L+NA+I Y+ +
Sbjct: 309 SVLSACAHLSIVKTGKMIHGLVIRMGIE----------------SYVNLQNALIHMYSGS 352
Query: 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207
G +A KLF + + I +I KCGSV+ A FD +KD+V
Sbjct: 353 GEIMDAQKLF---------NGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVS 403
Query: 208 RSAMIVGYGLHE-----WSAFGSFD-GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMI 261
SA+I GY H+ + F G + +E + + L L+QGK VH ++
Sbjct: 404 WSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIR 463
Query: 262 KLGLELESDL---LISLTAVCRYQPN------------VTLWNAMISGYAKNGYAEEAVK 306
K GL++ L L+ + C N V+ WNA+I G A NG E ++
Sbjct: 464 KNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLD 523
Query: 307 LFPKWMDYYIGKSEYRNN-VIVNTV-LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+F SE +NN VI N + + + C +
Sbjct: 524 MF----------SEMKNNGVIPNEITFMGVLGACRHM----------------------- 550
Query: 365 GYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
GL +EG F I KHGIEP +HY +VDLL RAG N A K I +MP+ +
Sbjct: 551 -----GLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDV 605
Query: 424 SVRRALLSAWK 434
+ ALL A K
Sbjct: 606 ATWGALLGACK 616
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 144/320 (45%), Gaps = 58/320 (18%)
Query: 93 SCDLEFLE-QGKIVHGFMIKLGLELE---SDLLISLTAVC--------RYQPNVTLR--- 137
+C + LE GK +H ++K+G + + + LI++ AVC + + L
Sbjct: 150 ACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 209
Query: 138 -NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
N++++GY K G EEA +F + + N++ + +I + K G V A
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQM---------PQRNIVASNSMIVLLGKMGQVMEAWKL 260
Query: 197 FDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSN----EENEYGTALDCSCDLEF 249
F+ +KD+V SA+I GY G++E A F + +N +E + L L
Sbjct: 261 FNEMDEKDMVSWSALISGYEQNGMYE-EALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 319
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
++ GK++HG +I++G+E V L NA+I Y+ +G +A KLF
Sbjct: 320 VKTGKMIHGLVIRMGIE----------------SYVNLQNALIHMYSGSGEIMDAQKLF- 362
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+ + I +I KCGSV+ A FD +KD+V SA+ GY H
Sbjct: 363 --------NGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQH 414
Query: 370 GLGEEGWVLFHHIRKHGIEP 389
E LFH ++ I P
Sbjct: 415 DCFSETLALFHEMQLGQIRP 434
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 130/313 (41%), Gaps = 46/313 (14%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF--------LVCYLFDG---LFDRTIVFLDLYHLW 64
VL AC L + G +HG + +G + +++ G + D +F + H
Sbjct: 310 VLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLF-NGSHNL 368
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTAL-DCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 123
+ W++ S G + E AL D + + + ++ G+ E+ L
Sbjct: 369 DQISWNSMIS--GCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFS-ETLALFH 425
Query: 124 LTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 183
+ + +P+ T+ ++IS ++ KW+ YI K+ + NVI+ T L+DM
Sbjct: 426 EMQLGQIRPDETILVSVISACTHLAALDQG-----KWVHAYIRKNGLKVNVILGTTLLDM 480
Query: 184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS--AFGSF--DGLLSNEENE 236
Y KCG V+ A F+ +K V +A+I+G GL E S F +G++ NE
Sbjct: 481 YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITF 540
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMI-KLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
G C + +++G+ MI K G+E PNV + M+
Sbjct: 541 MGVLGACR-HMGLVDEGRCHFASMIEKHGIE----------------PNVKHYGCMVDLL 583
Query: 296 AKNGYAEEAVKLF 308
+ G EA KL
Sbjct: 584 GRAGLLNEAEKLI 596
>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
Length = 667
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 113/414 (27%), Positives = 165/414 (39%), Gaps = 120/414 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKSEYR---- 171
NA+I+G KNGYAE A+++F + D G++ +R
Sbjct: 178 NAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVED 237
Query: 172 ----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DKDVVMRSAMIVGYGLHEWSAFGSF 226
+ V V LIDMY KC S++ A FD DKDVV +AMI Y L++ AF +
Sbjct: 238 KGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLND-RAFEAI 296
Query: 227 D----GLLSNEENEYGTA----LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL 275
L+S G L + + K H I+LGL+ + LI
Sbjct: 297 SLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDA 356
Query: 276 TAVC-----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------ 312
A C R WNA +SGY +G ++A++LF + +
Sbjct: 357 YARCGKMKLMRLTLERGSWRAETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMA 416
Query: 313 ----------DYYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
D GK+ + + + T LID+Y+K G +D A F +K
Sbjct: 417 SILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEK 476
Query: 355 DVVMRSAMTVGYGLHG-----------------------------------LGEEGWVLF 379
DVV + + GYG+HG + +EG +F
Sbjct: 477 DVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVF 536
Query: 380 HHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+R HG+ P +HY+ +VD+L RAG A + I +MP E SV ALL A
Sbjct: 537 KDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALLGA 590
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 106/290 (36%), Gaps = 56/290 (19%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV-----GYGLHEWSAFG 224
+ + V LI MY CG V A F ++ VV +A+I GY FG
Sbjct: 139 FGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFG 198
Query: 225 SF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC 279
DG+ + C+ + L G+ VH + GL + LI + C
Sbjct: 199 EMAADGVGIDRATVVSVLPACA-QAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKC 257
Query: 280 R-------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPK-------W-----MDY 314
R + +V W AMI Y N A EA+ L + W M Y
Sbjct: 258 RSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVY 317
Query: 315 YI--------GKSE-----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ GK ++++ V T LID YA+CG + L + +R +
Sbjct: 318 LLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRA 377
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+A++ GY + G ++ LF + + P A ++ A +
Sbjct: 378 ETWNAALS-GYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESA 426
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 162/369 (43%), Gaps = 85/369 (23%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI------------------GKS---- 168
P+V A+I G+A G E+A+ + + + + GK+
Sbjct: 37 NPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQ 96
Query: 169 ----EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
+ +++ V T L+D+YA+ G V A FD +K +V +AM+ Y H +A
Sbjct: 97 AVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAA 156
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
FDG+ E G + D G+ + G+ E+ +L + +
Sbjct: 157 RVLFDGM----EERDGVCWNVMID-----------GY-TQNGMPNEALVLFRRMLKAKAK 200
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
PN +++S + G E +W+ YI + + NV V T L+DMY+KCGS++
Sbjct: 201 PNEVTVLSVLSACGQLGALESG-----RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 255
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE----------------------------- 373
A + FD+ DKDVV ++M VGY + G +
Sbjct: 256 DARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACG 315
Query: 374 ------EGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
EGW +F+ ++ ++GIEP+ +HY +V+LL RAG+ A++ + NM IE +
Sbjct: 316 HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLW 375
Query: 427 RALLSAWKI 435
LL A ++
Sbjct: 376 GTLLGACRL 384
>gi|297746034|emb|CBI16090.3| unnamed protein product [Vitis vinifera]
Length = 458
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 153/356 (42%), Gaps = 96/356 (26%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
N++V T LID+Y+K ++D + + FD +++++ ++M+ GY H + +L
Sbjct: 44 NIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYA-HCQQPVAAM--VLVR 100
Query: 233 EENEYGTALD---CSCDLEF------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
+ G L+ +C L L+ K VH +I+ GLE S L ++L V
Sbjct: 101 DMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECS 160
Query: 284 NVTL-----------------WNAMISGYAKNGYAEEAVKLFPKW------MDYY----- 315
+ +L WNA+I G + G E A+K F K MD +
Sbjct: 161 SSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSV 220
Query: 316 ---IG----------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
IG K+ Y +N+ V L+ MYA+CGS++ A F DV
Sbjct: 221 LRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDV 280
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------RH------------- 391
+ +++ G HG G E LF +R+ G++P RH
Sbjct: 281 ISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDL 340
Query: 392 ------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY+ +VDL +RAGY + A FI MPIE SV +ALLSA ++
Sbjct: 341 MRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSACQV 396
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/413 (24%), Positives = 161/413 (38%), Gaps = 115/413 (27%)
Query: 93 SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAE 151
SC LE + +G+ VH K G ++ N + ++I Y+K G E
Sbjct: 119 SCGKLEGVREGEEVHCCATKHG----------------FKSNSFVATSLIDMYSKKGCVE 162
Query: 152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
+A K+F + + NV+V T +I+ Y CG V FD ++DVVM S +
Sbjct: 163 DAYKVFGEM---------HERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVL 213
Query: 212 IVGY--GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
I GY + +A FD + + + + L+ G+ + +E+
Sbjct: 214 ISGYIESKNMAAARELFDKMPNRDTMSWNAMLN---------------GYAVNGEVEMFE 258
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+ + + NV WN +I GY KNG E ++ F
Sbjct: 259 KVFDEMP-----ERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLS 313
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
KW+ Y Y+ N+ V VLIDMYAKCG ++ A + F+ KD++
Sbjct: 314 ACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIIS 373
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIE------------------------------ 388
+ + G +HG + +F ++ G E
Sbjct: 374 WNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMV 433
Query: 389 ------PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P+ +HY +VDLL RAG + A FI MPIE + ALL A ++
Sbjct: 434 DHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRL 486
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 134/523 (25%), Positives = 217/523 (41%), Gaps = 117/523 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-LFDRTI---- 55
MQ + ++P+ T +L AC +L L G ++H +F G Y+ +G L D +
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD 294
Query: 56 --VFLDLYHLWSRTE---WS----AFGSFDGLLSNEE------------NEYGTAL---D 91
L +++ RT W+ AFG + L + E N++
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNV 134
C+C E ++ G+ +H +K G E SD+ +S + Y + +V
Sbjct: 355 CTCTRE-IDLGEQIHSLSVKTGFE--SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPK------WMD------------------------YY 164
+MI+GY ++ ++A+ F + W D
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHAR 471
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS 221
I S Y +V + L+++YA+CG + A F+ KD + + ++ G+ GLHE +
Sbjct: 472 IYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEA 531
Query: 222 --AFGSFD--GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
F D G+ N + +AL S +L ++QGK +H +IK G E+++
Sbjct: 532 LKVFMRMDQSGVKHNVFT-FVSALSASANLAEIKQGKQIHARVIKTGHSFETEV------ 584
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
NA+IS Y K G E+A F + + RN V NT++ ++
Sbjct: 585 ----------GNALISLYGKCGSFEDAKMEFSEMSE--------RNEVSWNTIITSC-SQ 625
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIR-KHGIEPRHQ 392
G A FD+ + + +G GL EEG F + ++GI PR
Sbjct: 626 HGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPD 685
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA V+D+ RAG + A KFI MPI V R LLSA K+
Sbjct: 686 HYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKV 728
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 140/364 (38%), Gaps = 90/364 (24%)
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------------------- 171
AM+SGYA+NG EEA+ L+ + + + Y
Sbjct: 113 AMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKH 172
Query: 172 ---NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHEWSAF 223
+ + V +I +Y +CGS LA F +D V + +I G+G H F
Sbjct: 173 GFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIF 232
Query: 224 G--SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLTA 277
F GL S + + L L L++G +H ++ K G+ +E LL L
Sbjct: 233 EEMQFSGL-SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLL-DLYV 290
Query: 278 VC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY- 315
C + NV LWN M+ + + ++ +LF P Y
Sbjct: 291 KCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPC 350
Query: 316 ------------IG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+G K+ + +++ V+ VLIDMY+K G ++ A + +KD
Sbjct: 351 ILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKD 410
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHA 410
VV ++M GY H ++ F ++K GI P + A + A R G HA
Sbjct: 411 VVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHA 470
Query: 411 FKFI 414
++
Sbjct: 471 RIYV 474
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 118/282 (41%), Gaps = 58/282 (20%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA 222
G +YR IV +LID+Y+K G V A F+ +D V AM+ GY GL E A
Sbjct: 72 GLGKYR---IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGE-EA 127
Query: 223 FGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL 275
G + + + + L E QG+++H K G E + +I+L
Sbjct: 128 LGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITL 187
Query: 276 TAVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK------------ 310
C ++ VT +N +ISG+A+ G+ E A+++F +
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVT-FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246
Query: 311 ------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ Y+ K+ ++ I+ L+D+Y KCG V+ A + F+ +
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
+VV+ + M V +G + + LF ++ GI P Y
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348
>gi|357148978|ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 598
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 171/425 (40%), Gaps = 122/425 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF------------------------------PKW 160
P + N M++ Y+K+ EAV +F P
Sbjct: 108 SPTLISWNCMVTAYSKSSCVTEAVAMFNTMRGVGVRPSGATLVGLLSGRVDSLSTRNPGL 167
Query: 161 MDY-YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
Y Y KS ++ V ++ M + G + A + FD +K VV SAM+ G+ L
Sbjct: 168 CLYGYSMKSGLDTDLPVLNSVLTMLVRAGQLYDACLLFDSMHEKSVVTWSAMVSGF-LQT 226
Query: 220 ---WSAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDL- 271
FG F+ + + AL + L L K VH +IK G E E DL
Sbjct: 227 GDYMKVFGLFNHMQTAGYKFDSVALVNLISAAVLLGNLLVAKGVHALLIKSGFESEQDLM 286
Query: 272 --LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
L++L A C ++ NV LW +MISGYA+ G+ ++A+K+F
Sbjct: 287 SSLVNLYAKCGDLEAAQEVFDAVHRKNVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVE 346
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
K ++ ++ + ++ V T LID Y KCG+V LA
Sbjct: 347 PNEATVSSVLSACANLGSANQAKKVEDHVVAIGLQKDLRVATGLIDTYCKCGNVTLAREI 406
Query: 348 FD--RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR---------------------- 383
FD T ++D+ + SAM GY G G E VLF+ ++
Sbjct: 407 FDGVTTTNRDLAIWSAMINGYACIGEGSEALVLFNEMQNQGVQPDAIVFTHLLTACNYSG 466
Query: 384 --------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
++GIEP +HY +DLL +AG+ + A +F +PI+L+ V +
Sbjct: 467 LVDEGLQCFRSLTVEYGIEPSIEHYMCTIDLLCKAGHLSAAKEFFRKIPIQLQNQVLAPI 526
Query: 430 LSAWK 434
L+A+
Sbjct: 527 LTAYS 531
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 121/303 (39%), Gaps = 72/303 (23%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---------------- 215
++V V T L+DMYAKC + A FD ++ + M+ Y
Sbjct: 78 SDVFVLTSLLDMYAKCACLPDARRLFDEMPSPTLISWNCMVTAYSKSSCVTEAVAMFNTM 137
Query: 216 -GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
G+ + + GLLS + T G ++G+ +K GL+ + +L S
Sbjct: 138 RGVGVRPSGATLVGLLSGRVDSLSTR----------NPGLCLYGYSMKSGLDTDLPVLNS 187
Query: 275 -LTAVCR--------------YQPNVTLWNAMISGYAKNG----------------YAEE 303
LT + R ++ +V W+AM+SG+ + G Y +
Sbjct: 188 VLTMLVRAGQLYDACLLFDSMHEKSVVTWSAMVSGFLQTGDYMKVFGLFNHMQTAGYKFD 247
Query: 304 AVKLF--------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+V L K + + KS + + + + L+++YAKCG ++ A FD
Sbjct: 248 SVALVNLISAAVLLGNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKCGDLEAAQEVFD 307
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409
K+VV+ ++M GY G ++ +F + +EP + V+ A G +N
Sbjct: 308 AVHRKNVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVEPNEATVSSVLSACANLGSANQ 367
Query: 410 AFK 412
A K
Sbjct: 368 AKK 370
>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
Length = 703
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 194/532 (36%), Gaps = 185/532 (34%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTE 68
+G T L+L+AC ALPSL G VH ++ C + F T + +++R
Sbjct: 96 DGFTFSLLLRACAALPSLAHGRAVH----AVAIRSCTASEDAFVATAIV----QMYARC- 146
Query: 69 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 128
G + N YG LE
Sbjct: 147 --------GDMVGAINAYGV---------------------------LE----------- 160
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM--------------------------- 161
+P++ LR ++++GY +NG AEEA++ F + +
Sbjct: 161 --KPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRK 218
Query: 162 -----DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
Y + S + +VNTVL Y K G + F+ D+DV+ S MI GY
Sbjct: 219 GQACHAYVVRNSLGYDLALVNTVL-SFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYV 277
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL----------EQGKIVHGFMIKLGLE 266
H + +GL E S L + E+GK VH + +G E
Sbjct: 278 QHG----DAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCE 333
Query: 267 LESDLLISLT-----------AVCRY----QPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
LE + +L A+C + + +V W A+I G +N E++ +F
Sbjct: 334 LEVGVATALVDMYMKCSCHEEAMCLFHRMPKKDVVAWAAVIGGLTQNELPGESLHVFKCM 393
Query: 312 M--DY----------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ D+ Y+ ++ + NN V L+D+Y+KCG +
Sbjct: 394 LLDDHVPDAITMVKVLAACSEFGGTRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDI 453
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
D A F+ T +KD+V+ +M GYG HGLG+E L+ +
Sbjct: 454 DSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNSVTFVSVLSAC 513
Query: 383 -----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
+ G+ P +H + +VDLL RAG A +FI M
Sbjct: 514 SHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRFIRGM 565
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 44/191 (23%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM----------------------------- 312
+P++ L ++++GY +NG AEEA++ F + +
Sbjct: 161 KPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKGQ 220
Query: 313 ---DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
Y + S + +VNTVL Y K G + F+ D+DV+ S M GY H
Sbjct: 221 ACHAYVVRNSLGYDLALVNTVL-SFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQH 279
Query: 370 GLGEEGWVLFHHIRKHGIEPRH-------QHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
G EG ++ + K ++P Q A VVD A G H + +++ EL
Sbjct: 280 GDAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVD--AEEGKRVH--RVAVSIGCELE 335
Query: 423 LSVRRALLSAW 433
+ V AL+ +
Sbjct: 336 VGVATALVDMY 346
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 134/299 (44%), Gaps = 55/299 (18%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
+V+ LI+ Y K G +D A FD ++DVV + M+VGY + G LS
Sbjct: 201 DVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGY---------ADAGFLS- 250
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
E D + ++ G+ I++G ++ L V + + + + ++
Sbjct: 251 ---EASCLFDEMPKRNLVSWSALIKGY-IQIGCYSKALELFKEMQVAKVKMDEVIVTTLL 306
Query: 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
S A+ G ++ +W+ YI K + + ++T LIDMY+KCG +D+A F T
Sbjct: 307 SACARLGALDQG-----RWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETG 361
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE------------------------ 388
DK V + S+M G +H GE+ LF + + GIE
Sbjct: 362 DKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQ 421
Query: 389 ------------PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
PR QHY +VDLL RAG + AF+ + MP++ ++ RALLSA K+
Sbjct: 422 IFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKL 480
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 104 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163
++ G+ I++G ++ L V + + + + ++S A+ G ++ +W+
Sbjct: 270 LIKGY-IQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQG-----RWLHM 323
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
YI K + + ++T LIDMY+KCG +D+A F T DK V + S+MI G +H +
Sbjct: 324 YIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSF 380
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 157/369 (42%), Gaps = 92/369 (24%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAPMF 196
N++ISGY + G E+A LF + R NV+ T +I+ Y K G V++ +F
Sbjct: 163 NSIISGYVQWGQVEKARDLFEEM--------PMRRNVVCWTAMINGYGKEGDFVEMLSLF 214
Query: 197 FDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
+ D V +A + L S ++ E G L D+ + I+
Sbjct: 215 RQMLVSADEVQPNAATMVCLLSACSTLCNY---------EVGRFLSVFIDVNKIPLNTIL 265
Query: 257 HGFMI----KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--- 309
+I K G ++E I C+ P+ WNA+I+G + G EEA+ L+
Sbjct: 266 VTALIDMYSKCG-DVEKAWRIFDGVSCKNLPS---WNAIITGCVQGGLLEEAIDLYRHMK 321
Query: 310 ---------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
+ + Y+G++ NVI+ T L+DMYAKCG +D
Sbjct: 322 AQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKID 381
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------------ 372
A + F +T +KDV + +AM +G HG G
Sbjct: 382 DACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACN 441
Query: 373 -----EEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
EEG V F + KHG+ P+ +HYA +VDLL RAG+ A++ + NM I +
Sbjct: 442 HSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIW 501
Query: 427 RALLSAWKI 435
ALLSA +I
Sbjct: 502 GALLSACRI 510
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 16/236 (6%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +++ V LIDMY KC +D A F+D +D V +++I GY +W L
Sbjct: 124 FGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYV--QWGQVEKARDL 181
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
EE + C + G G +++ L L +L+S V QPN
Sbjct: 182 F--EEMPMRRNVVC---WTAMINGYGKEGDFVEM-LSLFRQMLVSADEV---QPNAATMV 232
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
++S + E +++ +I ++ N I+ T LIDMY+KCG V+ A FD
Sbjct: 233 CLLSACSTLCNYEVG-----RFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFD 287
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
K++ +A+ G GL EE L+ H++ ++P V+ A G
Sbjct: 288 GVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLG 343
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 152/377 (40%), Gaps = 96/377 (25%)
Query: 132 PNVTLRNAMISGYAKN---GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
P V L N I G+++ G +V LF + +G N T L + C
Sbjct: 52 PTVFLFNTTIRGFSRARRPGSLLSSVLLFVR-----MGVLSLAPNNFTFTFLFQGCSNCV 106
Query: 189 SVDLAPMF----FDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCS 244
+ DL F + + DV +R+++I F S G L N+ D S
Sbjct: 107 AFDLGRQFHGMVIKNSFEMDVFVRNSII---------RFYSVCGRL----NDARWVFDES 153
Query: 245 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304
+L+ + ++ G I+ G LE+ L S + N WN MISGYA+NG +EA
Sbjct: 154 SELDVVSWNSMIDG-CIRNGNILEALSLFSKMT----ERNDISWNMMISGYAQNGQPKEA 208
Query: 305 VKLFPK------------------------------WMDYYIGKSEYRNNVIVNTVLIDM 334
+ LF + W+ YIGK R + I++ LIDM
Sbjct: 209 LALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDM 268
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK---------- 384
YAKCGS+DLA F + +DV +A G ++G EE LF ++
Sbjct: 269 YAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSY 328
Query: 385 --------------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
HGI P HYA +VDLL RAG A KF+ +MP
Sbjct: 329 IAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMP 388
Query: 419 IELRLSVRRALLSAWKI 435
I+ + ALL A ++
Sbjct: 389 IKPDNVIWGALLGACRV 405
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 130/342 (38%), Gaps = 76/342 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M V +APN T + + C + +G + HG + F +
Sbjct: 83 MGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEM----------------- 125
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
++ R F S G L N+ D S +L+ + ++ G I+ G LE+
Sbjct: 126 -DVFVRNSIIRFYSVCGRL----NDARWVFDESSELDVVSWNSMIDG-CIRNGNILEALS 179
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK--------------------- 159
L S + N N MISGYA+NG +EA+ LF +
Sbjct: 180 LFSKMT----ERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACS 235
Query: 160 ---------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
W+ YIGK R + I++ LIDMYAKCGS+DLA F + +DV +A
Sbjct: 236 QLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTA 295
Query: 211 MIVGYGLHEWSA-----FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
I G ++ S F G + + A+ C+C G + GF
Sbjct: 296 AISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACS----HAGWVEKGF------ 345
Query: 266 ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307
S++ V +P + + M+ + G EEA K
Sbjct: 346 ----HYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKF 383
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 145/347 (41%), Gaps = 89/347 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL----HEWSAFGSFDGLLS 231
V L+ MY KCG +D A F+ + DKD + SAMI GY HE L
Sbjct: 251 VGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNG 310
Query: 232 NEENEY---GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY---- 281
N+ +E+ G CS D+ LE+GK +HG+ +K G E + L+ + A C
Sbjct: 311 NKPSEFTFVGVINACS-DIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDA 369
Query: 282 --------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------- 320
+P++ LW +MISGYA+NG E A+ L+ + I E
Sbjct: 370 RKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSL 429
Query: 321 -----------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+ V + + L MYAKCGS++ + F R +D++ +AM
Sbjct: 430 AALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMI 489
Query: 364 VGYGLHGLGEEGWVLFHHIR------------------------------------KHGI 387
G +G G + LF +R + GI
Sbjct: 490 SGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGI 549
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
PR +HYA +VD+L+RAG + +FI + I+ + + R LL A +
Sbjct: 550 VPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACR 596
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 134/318 (42%), Gaps = 64/318 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD--GLL 230
+V V + LI+MY K G + A FD +++ V + +I GY + E AF +++ L+
Sbjct: 147 DVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM-ERMAFEAWELFXLM 205
Query: 231 SNEENE-----YGTALDCSCDLEFLEQGKIVHGFMIKLG-LELES--DLLISLTAVCRY- 281
EE Y + L + + GK +H +K G L + S + L+++ C
Sbjct: 206 RREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCL 265
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
+ ++T W+AMI+GYA+ G + EA+ LF
Sbjct: 266 DDALKTFELSGDKDDIT-WSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINA 324
Query: 309 ---------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K + Y K+ Y + T L+DMYAKCGS+ A FD + D+V+
Sbjct: 325 CSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLW 384
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHA---- 410
++M GY +G E L+ ++ I P A V+ + G HA
Sbjct: 385 TSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIK 444
Query: 411 FKFIMNMPIELRLSVRRA 428
+ F + +PI LS A
Sbjct: 445 YGFSLEVPIGSALSTMYA 462
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 118/296 (39%), Gaps = 71/296 (23%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL-------------- 217
++V + L+++YAKCGS+ A + F+ +KDVV + +I GY
Sbjct: 43 SSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQ 102
Query: 218 -----------HEWSAFGSFDGLLSNEE-----NEYGTALDCSCDLEFLEQGKIVHGFMI 261
H +S G F S+ E + A+ S + +++ +
Sbjct: 103 RMRAENTLPNGHTFS--GVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMY-C 159
Query: 262 KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------------- 308
K+G L++ + + N W +ISGYA A EA +LF
Sbjct: 160 KIGCMLDARKVFDTIP----ERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKF 215
Query: 309 -----------PKWMDYYIGKSEY----RNNVI----VNTVLIDMYAKCGSVDLAPMFFD 349
P + Y GK + +N ++ V L+ MY KCG +D A F+
Sbjct: 216 IYTSVLSALTVPDLVHY--GKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFE 273
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+ DKD + SAM GY G E LF+++ +G +P + V++ + G
Sbjct: 274 LSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIG 329
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 46/168 (27%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTL 136
CS D+ LE+GK +HG+ +K G E + L+ + A C +P++ L
Sbjct: 325 CS-DIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVL 383
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------------- 169
+MISGYA+NG E A+ L+ + I E
Sbjct: 384 WTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTI 443
Query: 170 ---YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
+ V + + L MYAKCGS++ + F R +D++ +AMI G
Sbjct: 444 KYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISG 491
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 94/241 (39%), Gaps = 52/241 (21%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFD---RTIVFLDLYHL 63
P+ T V+ AC + +L G ++HG G+ Y L D + +D
Sbjct: 313 PSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKG 372
Query: 64 WSRTE------WSAFGSFDGLLSNEENEYGTALDCSCDLE-------------------- 97
+ + W++ G N ENE L C +E
Sbjct: 373 FDYLKEPDIVLWTSM--ISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLA 430
Query: 98 FLEQGKIVHGFMIKLGLELESDL---LISLTAVC----------RYQP--NVTLRNAMIS 142
LEQGK +H IK G LE + L ++ A C R P ++ NAMIS
Sbjct: 431 ALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMIS 490
Query: 143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 202
G ++NG +A++LF + + + K +Y V V + M G V+ ++F LD
Sbjct: 491 GLSQNGEGLKALELFEE-LRHGTTKPDYVTFVNVLSACSHM----GLVERGKVYFRMMLD 545
Query: 203 K 203
+
Sbjct: 546 E 546
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 147/347 (42%), Gaps = 91/347 (26%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LHEWSAFGSFDGLLSN- 232
V+ LI MYA+CG + A FD KD+V ++MI GY H A G F ++
Sbjct: 164 VSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG 223
Query: 233 -EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------- 279
+ NE + L +L L+ G V F+++ + L LI + C
Sbjct: 224 FQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSAR 283
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------ 309
+ + VT WNAMI+GYA+NG +EEA+KLF
Sbjct: 284 RIFDSMKKKDKVT-WNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASI 342
Query: 310 ------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
K ++ Y + ++++V V T L+DMYAKCGS+D A F K+ V +AM
Sbjct: 343 GALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMI 402
Query: 364 VGYGLHG-------------------------------------LGEEGWVLFHHIRKH- 385
HG L +EG LFH +
Sbjct: 403 SALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSF 462
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
G+ P+ +HY+ +VDL +RAG+ A+ F+M MP + + ALL A
Sbjct: 463 GLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGA 509
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 147/368 (39%), Gaps = 93/368 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
Q N NAMISG + EEA +LF + R NVI T ++D YAK G +
Sbjct: 137 QRNTASWNAMISGLVRYDRVEEASRLFEEM---------PRRNVISYTAMVDGYAKIGEI 187
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
+ A F+ K+VV + MI GY + G FD E + D +
Sbjct: 188 EQARALFNCMPQKNVVSWTVMISGYVEN-----GKFD--------EAENLFEQMPDKNIV 234
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G+ K G ++ +L CR ++ WNAMI+GYA+NG EEA+KL +
Sbjct: 235 AMTAMITGY-CKEGKTDKAKILFDQIP-CR---DLASWNAMITGYAQNGSGEEALKLHSQ 289
Query: 311 WMD------------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+ + KS Y + + + LI MY KCGS
Sbjct: 290 MLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGS 349
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------- 389
+ + + F + DVV +AM + HG + F +R + +EP
Sbjct: 350 ILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 409
Query: 390 -------------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
R +H+A +VD+L+R G A+K I MP E
Sbjct: 410 CGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCG 469
Query: 425 VRRALLSA 432
+ ALL+A
Sbjct: 470 IWGALLAA 477
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 126/306 (41%), Gaps = 53/306 (17%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC---GSVDLAP 194
N++I+GY KNG +E+ +LF G +N V N+ M A C +D A
Sbjct: 82 NSIITGYWKNGCFDESKRLF--------GLMPTKNVVSWNS----MIAGCIEDERIDEAW 129
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQ 252
+F ++ +AMI G ++ S F+ + Y +D + +EQ
Sbjct: 130 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 189
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ + C Q NV W MISGY +NG +EA LF +
Sbjct: 190 ARALFN--------------------CMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP 229
Query: 313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
D N++ T +I Y K G D A + FD+ +D+ +AM GY +G G
Sbjct: 230 D---------KNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSG 280
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVRR 427
EE L + K G++P H V+ + + G H ++ E R+S+
Sbjct: 281 EEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHV--LVLKSGYESRISICN 338
Query: 428 ALLSAW 433
AL++ +
Sbjct: 339 ALITMY 344
>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
Length = 837
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 138/579 (23%), Positives = 223/579 (38%), Gaps = 159/579 (27%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIVFLDLYHLWS 65
+++ACV G +VH + GF +V Y G D+ + D L +
Sbjct: 148 IIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKT 207
Query: 66 RTEWSAFGS--------------FDGLLSNE--ENEY--GTALDCSCDLEFLEQGKIVHG 107
W+A + F+ ++ + ++Y + L+ L +L+ GK +H
Sbjct: 208 PVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHA 267
Query: 108 FMIKLGLELES---DLLISLTAVC-RYQP-----------NVTLRNAMISGYAKNGYAEE 152
++++ +++ ++LI C R + N+ MI+GY +N Y E
Sbjct: 268 YVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWE 327
Query: 153 AVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVLID 182
AV+L + + Y+ K ++ V LID
Sbjct: 328 AVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALID 387
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL----LSNEENE 236
MY+KC ++D A FD VV +AMI GY + A F + +S
Sbjct: 388 MYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLT 447
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------RY------ 281
+ + L S L L+ K +HG +IK G L+ S LI + + C RY
Sbjct: 448 FVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTT 507
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLF----------------------------PKWMD 313
++ +WN++ SGY +EEA KL+ P
Sbjct: 508 NKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQ 567
Query: 314 YY--IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
++ + K ++ + L+DMYAKCGSV+ A F ++ KD ++M Y HG
Sbjct: 568 FHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGK 627
Query: 372 GEEGWVLF-----------------------------------HHIRKHGIEPRHQHYAR 396
EE +F + + ++GIEP +HYA
Sbjct: 628 VEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMARYGIEPGIEHYAS 687
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VV LL RAG A +FI M I V R+LLSA ++
Sbjct: 688 VVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRV 726
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 110/271 (40%), Gaps = 56/271 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHEWSAFGSFD 227
+V ++ +L+ Y K GSV A FD+ ++++V S+++ +GY F F
Sbjct: 74 DVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQ 133
Query: 228 GLLSNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
++ NEY + + + E G VH ++IK G D+ + + V Y +
Sbjct: 134 RTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSG--FGEDVYVGTSLVVLYAKHG 191
Query: 286 TL-----------------WNAMISGYAKNGYAEEAVKLFP------------------- 309
+ W A+I+GY K+G +E +++LF
Sbjct: 192 EIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILN 251
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K + Y+ +SE + +V VLID Y KCG V FDR K+++
Sbjct: 252 ACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIIS 311
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ M GY + E L + + G +P
Sbjct: 312 WTTMIAGYMQNSYDWEAVELVGEMFRMGWKP 342
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 55/234 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV--------------C-- 44
M++ V+P+ T +L AL L + ++HG I GF + C
Sbjct: 436 MRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSC 495
Query: 45 -----YLFDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGL-LSNEE-NEYGTA--LD 91
Y+F+G ++ IV Y+L ++E AF + L LS E NE+ A
Sbjct: 496 IRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSE-EAFKLYSDLQLSRERPNEFTFAALTT 554
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAE 151
+ L L G+ H ++K+G LESD I+ NA++ YAK G E
Sbjct: 555 AASILASLPHGQQFHNQVMKMG--LESDPFIT--------------NALVDMYAKCGSVE 598
Query: 152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
EA K+F S +++ N+ +I MYA+ G V+ A F+ + ++
Sbjct: 599 EAEKIF--------SSSVWKDTACWNS-MISMYAQHGKVEEALRMFETMVSNNI 643
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 106/426 (24%), Positives = 174/426 (40%), Gaps = 132/426 (30%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKS 168
Q V NAMI Y++ G EA+ L+ + +D G+
Sbjct: 67 QCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEE 126
Query: 169 EYR--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---- 216
+R ++V V ++++YAKCG +D A FD+ +D+V + MI G
Sbjct: 127 TWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQ 186
Query: 217 ----------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266
+H+ G DG++ G C+ L + G +HG+MI+ +
Sbjct: 187 AREAVDIYRQMHKKRVEG--DGVVM-----LGLIQACTT-LGHSKMGLSIHGYMIRKDII 238
Query: 267 LESDLLISLT-----------AVCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
++ + SL A C ++ NV W+A+ISG+A+NG+A A++L
Sbjct: 239 MDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDM 298
Query: 312 MDY----------------------YIGKSEY-------RNNVIVNTVLIDMYAKCGSVD 342
+ +GKS + + + +T +IDMY+KCGS+
Sbjct: 299 QSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLS 358
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------- 391
A FD+ +D + +A+ YG+HG GEE LF +R+ ++P H
Sbjct: 359 FARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFS 418
Query: 392 -------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
+HYA +VDLL+RAG A + I +M E +++
Sbjct: 419 HSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIW 478
Query: 427 RALLSA 432
ALLS
Sbjct: 479 VALLSG 484
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
N LI YA+ G ++ A FD++ V +AM + Y G E L+H + G+
Sbjct: 42 NAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGV 101
Query: 388 EPRHQHYARVVDLLARA 404
P Y V+ R+
Sbjct: 102 RPDSSTYTVVLKACTRS 118
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 117/468 (25%), Positives = 183/468 (39%), Gaps = 91/468 (19%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T P VLKAC A P VH Q LG G + ++ R
Sbjct: 135 PNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGM-------GPHACVQNAILTAYVACRL 187
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
SA FD + + + + + F ++ ++ M++LG+E + L+SL +
Sbjct: 188 ILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSA 247
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
N+ L +++ YI + + IV LIDMYAKC
Sbjct: 248 SSKHCNLDL---------------------GRFVHLYIVITGVEIDSIVTNALIDMYAKC 286
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCS 244
G + A FD+ LDKDVV ++M+ Y GL E +A F+ + + + + C
Sbjct: 287 GHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVE-NAVQIFNHMPVKNVVSWNSIICCL 345
Query: 245 C-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEE 303
+ ++ E ++ H I G+ + L+S+ + C ++ L
Sbjct: 346 VQEGQYTEAVELFHRMCIS-GVMPDDATLVSILSCCSNTGDLAL---------------- 388
Query: 304 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
K YI + +V + LIDMYAKCG++ A F +K+VV + +
Sbjct: 389 -----GKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVII 443
Query: 364 VGYGLHGLGEEGWVLFHHIRKHG------------------------------------I 387
LHG GEE +F ++ G I
Sbjct: 444 GALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRI 503
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P +HYA +VDLL R G+ A I MP++ + V ALL A +I
Sbjct: 504 SPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRI 551
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 139/366 (37%), Gaps = 92/366 (25%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVC------RY---------QPNVTLRNAMISG 143
+++ K+VH +I GL + L L ++C RY QPN + N +I G
Sbjct: 52 MKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRG 111
Query: 144 YAKNGYAEEAVKL---------------FPKWMDYYIGKSEYRNNVIVNTVLIDM----- 183
Y+ + +++ L FP + K Y VIV+ I +
Sbjct: 112 YSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPH 171
Query: 184 ----------YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG--LLS 231
Y C + A FD D+ +V ++MI GY S G D LL
Sbjct: 172 ACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGY-----SKMGFCDEAILLF 226
Query: 232 NEENEYGTALDC------------SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
E + G D C+L+ G+ VH +++ G+E++S
Sbjct: 227 QEMLQLGVEADVFTLVSLLSASSKHCNLDL---GRFVHLYIVITGVEIDS---------- 273
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ NA+I YAK G+ + A +F + +D +V+ T +++ YA G
Sbjct: 274 ------IVTNALIDMYAKCGHLQFAKHVFDQMLD---------KDVVSWTSMVNAYANQG 318
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
V+ A F+ K+VV +++ G E LFH + G+ P ++
Sbjct: 319 LVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILS 378
Query: 400 LLARAG 405
+ G
Sbjct: 379 CCSNTG 384
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 186/493 (37%), Gaps = 137/493 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T P +L +C L SL G VH I GF LF R L HL+S
Sbjct: 109 PNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFE-----SDLFVRNA----LIHLYS-- 157
Query: 68 EWSAFGS-------FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
FG+ FD L + Y T + ++ E + G M G+ +
Sbjct: 158 ---VFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFT 214
Query: 121 LISLTAVCRY--QPNV-------------------TLRNAMISGYAKNGYAEEAVKLFPK 159
++L +VC +PNV L++A++ YAK G A ++F
Sbjct: 215 FVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFST 274
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
+G S+ + + ++ YA+CG +++A F+ ++DV+ +AMI G
Sbjct: 275 -----MGTSK---SAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISG----- 321
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
Y A CS LE ++ M LG++ + L+++ + C
Sbjct: 322 -----------------YSQAGQCSEALELFKE-------MEALGIKPDEVTLVAVLSAC 357
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
L + Y +NG + N I+ ++DMYAKCG
Sbjct: 358 ARLGAFDLGKRLYHQYIENGV--------------------FNQNTILTAAVMDMYAKCG 397
Query: 340 SVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLGEEGWVLFHHI--------------- 382
S+D A F R K + ++M G HGLGE +F +
Sbjct: 398 SIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGV 457
Query: 383 ---------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
+GI+P+ +HY +VDLL R G A+ + MP E
Sbjct: 458 LCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEA 517
Query: 422 RLSVRRALLSAWK 434
+ RALLSA +
Sbjct: 518 NSVIWRALLSACR 530
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 120/475 (25%), Positives = 185/475 (38%), Gaps = 142/475 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLRNAMISG 143
L+ + H ++ LGL S L LI A+C++ NV L N++I+G
Sbjct: 39 LKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98
Query: 144 YAKNGYAEEAVKLFPKWMD----------------------YYIGKS--------EYRNN 173
YAKN EA +LF + + GKS + ++
Sbjct: 99 YAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSD 158
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH----------EWSAF 223
+V ++ MY KCG+ + + FD ++ + +I GY + E+
Sbjct: 159 TVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQ 218
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK--LGLELESDLLISLTAVCRY 281
D + + C D + G+ +H +++K L L L+SD+ + + Y
Sbjct: 219 MQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMY 278
Query: 282 QP-----------------NVTLWNAMISGYAKNGYAEEAVKLF---------------- 308
NV W AMI+GY +NG ++EA+ LF
Sbjct: 279 SRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSL 338
Query: 309 ----PKWMDY-----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF-DRTL 352
P + + + E N V + LIDMY+KCGS+D A F D +L
Sbjct: 339 VSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSL 398
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHH------------------------------- 381
KD + S+M GYGLHG G+E +L+
Sbjct: 399 CKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLN 458
Query: 382 -----IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
I +GIEP + +A +VD+L RAG + A FI MP+E SV AL+S
Sbjct: 459 IYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVS 513
>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Glycine max]
Length = 576
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 123/475 (25%), Positives = 188/475 (39%), Gaps = 98/475 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M + P LK+C + +L G +HGQ+ GF C LDL
Sbjct: 95 MHRTSLCPTSHAVSSALKSCARIHDMLCGMSIHGQVHVFGFNTCVYVQ------TALLDL 148
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELE 117
Y ++ + GTA D + + ++ G+ +K G E
Sbjct: 149 Y-------------------SKIGDMGTARKVFDEMANKSVVSWNSLLSGY-VKAGNLDE 188
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177
+ L S +V N+MISGYAK G +A LF + + N+
Sbjct: 189 AQYLFSEIP----GKDVISWNSMISGYAKAGNVGQACTLFQRMPE---------RNLSSW 235
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGLLSNEEN 235
+I + CGS+ A FFD ++ V MI GY G SA FD + +
Sbjct: 236 NAMIAGFIDCGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLL 295
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
Y + C + + K K LEL +D+L V P+ ++IS
Sbjct: 296 SYNAMIAC-----YAQNSKP------KEALELFNDMLKQDIYV---HPDKMTLASVISAC 341
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
++ G E + D+ I ++ + T LID+YAKCGS+D A F +D
Sbjct: 342 SQLGDLEHWWWIESHMNDFGIVLDDH-----LATALIDLYAKCGSIDKAYELFHNLRKRD 396
Query: 356 VVMRSAMTVGYGLHG-----------------------------------LGEEGWVLFH 380
+V SAM G G++G L E+G+ F+
Sbjct: 397 LVAYSAMIYGCGINGKASDAIKLFEQMLAECIGPNLVTYTGLLTAYNHAGLVEKGYQCFN 456
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++ +G+ P HY +VDL RAGY + A+K I+NMP++ V ALL A ++
Sbjct: 457 SMKDYGLVPSIDHYGIMVDLFGRAGYLDEAYKLILNMPMQPNAGVWGALLLACRL 511
>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
Length = 562
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 114/485 (23%), Positives = 185/485 (38%), Gaps = 135/485 (27%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
Y + L S QGK VH I DL ++ V Y
Sbjct: 14 YSSLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDG 73
Query: 131 --QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDY---------------- 163
+V AM+SGYAKN +EA+ LF P +
Sbjct: 74 MPHRSVVSWTAMVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSG 133
Query: 164 -----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K + ++ V + L+DM+ +CGSV A F KD+V ++++ G+
Sbjct: 134 EQIHACAAKGRFAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVER 193
Query: 219 EW--SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
E A G FD +L + + +G+AL + L +++H +IKLG E+ +
Sbjct: 194 EHCNDALGLFDSMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAI 253
Query: 273 ISLT---AVCRY------------QPNVTLWNAMISGYAKN-GYAEEAVKLFPK------ 310
SL A CR +P++ A+ISGY+ + Y+++A+KLF K
Sbjct: 254 ASLIDSYAKCRSLSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDDAMKLFCKIHRKGL 313
Query: 311 ------------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ Y+ K + ++ ++ L+DMYAK G +
Sbjct: 314 RIDAILLSSLLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRR 373
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR----------------------- 383
FD +++V+ +++ HG GE+ LF +
Sbjct: 374 AFDEMPNRNVISWTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGM 433
Query: 384 -------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
K+GI+PR +HY+ VDLLAR G A+ + N E + S+ +L
Sbjct: 434 MNKGMEYFTSMMSKYGIDPRFKHYSSAVDLLARGGQLEDAWMLVQNTNTECKSSMYGTML 493
Query: 431 SAWKI 435
A K+
Sbjct: 494 GACKV 498
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 114/285 (40%), Gaps = 61/285 (21%)
Query: 71 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT- 125
A G FD +L + + +G+AL + L +++H +IKLG E+ + SL
Sbjct: 199 ALGLFDSMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAIASLID 258
Query: 126 --AVCRY------------QPNVTLRNAMISGYAKN-GYAEEAVKLFPK----------- 159
A CR +P++ A+ISGY+ + Y+++A+KLF K
Sbjct: 259 SYAKCRSLSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDDAMKLFCKIHRKGLRIDAI 318
Query: 160 -------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
+ Y+ K + ++ ++ L+DMYAK G + FD
Sbjct: 319 LLSSLLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRRAFDEM 378
Query: 201 LDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE-QGKIVHGF 259
+++V+ +++I H FG L E G + D+ FL H
Sbjct: 379 PNRNVISWTSLITSCAQH---GFGEDAVTLFARMEEDGVKPN---DVTFLSLLSACSHSG 432
Query: 260 MIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304
M+ G+E S+ + P +++ + A+ G E+A
Sbjct: 433 MMNKGME----YFTSMMSKYGIDPRFKHYSSAVDLLARGGQLEDA 473
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 170/425 (40%), Gaps = 118/425 (27%)
Query: 96 LEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR---YQPNVTLR---------NAM 140
L F++ G +HGF+ K GL + + LI L C Y V R N+M
Sbjct: 118 LGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSM 177
Query: 141 ISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAPMF 196
I GY K G E A +LF PK M N+I LI YA+ V++A
Sbjct: 178 IDGYVKCGLIESARELFDLMPKEM----------KNLISWNCLISGYAQTSDGVNIASKL 227
Query: 197 FDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK 254
F +KD++ ++MI GY H A FD + + + T +D L F+ Q K
Sbjct: 228 FSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAK 287
Query: 255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW--- 311
+ + +V +N+M++GY +N Y EA++LF K
Sbjct: 288 TLFDQI--------------------PHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKE 327
Query: 312 ----------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
M +YI K ++ + LIDMY+KCGS+
Sbjct: 328 SHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQH 387
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------------- 372
A + F +K++ +A+ G +HGLG
Sbjct: 388 AMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSH 447
Query: 373 ----EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
+EG + F + RKH IEPR QHY +VD+L+R+G A I MPIE + R
Sbjct: 448 SGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWR 507
Query: 428 ALLSA 432
L+A
Sbjct: 508 TFLTA 512
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 148/565 (26%), Positives = 216/565 (38%), Gaps = 161/565 (28%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCY----------------- 45
P+ T P V KAC L SL +G +H + GF VC
Sbjct: 256 TPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHN 315
Query: 46 LFDGLFDRTIVFLDLY------HLWSRTEWSAFGSFDG-----LLSNEENEYGTALDCSC 94
+FD L R I L + ++W+ +A F L+S + L
Sbjct: 316 MFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACA 375
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAV 154
L +G+ VHGF I+ GL +V + NA++ YAK G EEA
Sbjct: 376 SLAASLRGRQVHGFSIRSGLV----------------DDVFVGNAVVDMYAKCGKMEEAN 419
Query: 155 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR----TLDKDVVMRSA 210
K+F + M + +V+ ++ Y++ G ++ A F+R ++ DVV +A
Sbjct: 420 KVFQR-MKF--------KDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTA 470
Query: 211 MIVGY-----GLHEWSAFGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLG 264
+I GY G F S +L +C + L GK H + IK
Sbjct: 471 VITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFI 530
Query: 265 LELE------SDL-----LISLTAVCRYQP--------------NVTLWNAMISGYAKNG 299
L L+ DL LI + A C+ +V W MI GYA++G
Sbjct: 531 LNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHG 590
Query: 300 YAEEAVKLFPKW--MDYYIGKSEY--------------------------RN-----NVI 326
A A++LF MD I +++ RN +
Sbjct: 591 DANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLF 650
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-- 384
V LIDMY+K G VD A + FD ++ V +++ GYG+HG GE+ +F +RK
Sbjct: 651 VANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVP 710
Query: 385 ----------------------HGI------------EPRHQHYARVVDLLARAGYSNHA 410
HGI +P +HYA +VDL RAG A
Sbjct: 711 LVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEA 770
Query: 411 FKFIMNMPIELRLSVRRALLSAWKI 435
K I MP+E V ALLSA ++
Sbjct: 771 MKLINEMPMEPTPVVWVALLSACRL 795
>gi|356518094|ref|XP_003527718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g04860-like [Glycine max]
Length = 714
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 128/463 (27%), Positives = 185/463 (39%), Gaps = 128/463 (27%)
Query: 97 EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLRNAMI 141
E QG+ VH F IK GL L+ S+ L S+ A C + NV N MI
Sbjct: 158 ELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEASQLLFQEMGEKNVISWNTMI 217
Query: 142 SGYAKNGYAEEAVKLF------------------------PKWMDYYIGKSEYRNNVIVN 177
Y +NG+ ++AV F P+ + YI K + + V
Sbjct: 218 GAYGQNGFEDKAVLCFKEMLKEGWQPSPVTMMNLMSANAVPETVHCYIIKCGFTGDASVV 277
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEE 234
T L+ +YAK G D+A + ++ KD++ + +I Y G E SA F L +
Sbjct: 278 TSLVCLYAKQGFTDMAKLLYECYPTKDLISLTGIISSYSEKGEVE-SAVECFIQTLKLDI 336
Query: 235 NEYGTALDCS----CDLEFLEQGKIVHGFMIKLGLE---LESDLLIS--------LTAVC 279
AL D G HG+ +K GL L ++ LIS L A+
Sbjct: 337 KPDAVALISVLHGISDPSHFAIGCAFHGYGLKNGLTNDCLVANGLISFYSRFDEILAALS 396
Query: 280 ----RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW---------------------MDY 314
R + + WN+MISG + G + +A++LF + + Y
Sbjct: 397 LFFDRSEKPLITWNSMISGCVQAGKSSDAMELFCQMNMCGQKPDAITIASLLSGCCQLGY 456
Query: 315 Y-IGKSEY----RNNVIVN----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
IG++ + RNNV V T LIDMY KCG +D A F D +V +++ G
Sbjct: 457 LRIGETLHGYILRNNVKVEDFTGTALIDMYTKCGRLDYAEKIFYSINDPCLVTWNSIISG 516
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRH---------------------------------- 391
Y L+GL + + F +++ G+EP
Sbjct: 517 YSLYGLEHKAFGCFSKLQEQGLEPDKITFLGVLAACTHGGLVYAGMEYFRIMRKEYGLMP 576
Query: 392 --QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
QHYA +V LL RAG A + I NM I +V ALLSA
Sbjct: 577 TLQHYACIVGLLGRAGLFKEAIEIINNMEIRPDSAVWGALLSA 619
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 102/259 (39%), Gaps = 45/259 (17%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNE 233
VNT LID Y K G A F+ DVV + +I GY H A F +L
Sbjct: 80 VNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHMLRES 139
Query: 234 ----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------- 279
+ + L E QG+ VH F IK GL L+ S+ L S+ A C
Sbjct: 140 FRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEASQ 199
Query: 280 -----RYQPNVTLWNAMISGYAKNGYAEEAVKLF------------------------PK 310
+ NV WN MI Y +NG+ ++AV F P+
Sbjct: 200 LLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPSPVTMMNLMSANAVPE 259
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ YI K + + V T L+ +YAK G D+A + ++ KD++ + + Y G
Sbjct: 260 TVHCYIIKCGFTGDASVVTSLVCLYAKQGFTDMAKLLYECYPTKDLISLTGIISSYSEKG 319
Query: 371 LGEEGWVLFHHIRKHGIEP 389
E F K I+P
Sbjct: 320 EVESAVECFIQTLKLDIKP 338
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
VNT LID Y K G A F+ DVV + + GY HG + LF H+ +
Sbjct: 80 VNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHMLRES 139
Query: 387 IEPRHQHYARVVDLLAR-----AGYSNHAFKFIMNMPIELRLS 424
P A ++ R G S HAF + ++ +LS
Sbjct: 140 FRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLS 182
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 144/571 (25%), Positives = 220/571 (38%), Gaps = 176/571 (30%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTIVFLDLYHLWSR 66
P+ T P VLKAC +PS G VH +F+ GF ++ +GL + +Y
Sbjct: 124 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGL-------VSMYGRCGA 176
Query: 67 TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM--------IKLGLELES 118
E +A FD E E G + + IV +M +K+ +
Sbjct: 177 WE-NARQVFD-----EMRERGVG-------DLVSWNSIVAAYMQGGDSIRAMKMFERMTE 223
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
DL I AV NV A + +++ K + Y +S +V V
Sbjct: 224 DLGIRPDAVSLV--NVLPACASVGAWSRG-----------KQVHGYALRSGLFEDVFVGN 270
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----------GLHE--------- 219
++DMYAKCG ++ A F+R KDVV +AM+ GY GL E
Sbjct: 271 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 330
Query: 220 ----WSA-----------FGSFD-----GLLSNEENEYG-TALDCSCDLE-FLEQGKIVH 257
WSA F + D L +E N +L C L L GK H
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390
Query: 258 GFMIKLGLELESD----------LLISLTAVCRYQP--------------NVTLWNAMIS 293
IK L L+ + LI + + C+ +V W +I
Sbjct: 391 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 450
Query: 294 GYAKNGYAEEAVKLFPKWMD--------------------------------YYIGKSEY 321
G A++G A EA++LF + + Y+ ++ +
Sbjct: 451 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 510
Query: 322 RNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ ++ V LIDMY+K G VD A + FD ++ V +++ GYG+HG GEE +F+
Sbjct: 511 ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFY 570
Query: 381 HIRK------------------------------------HGIEPRHQHYARVVDLLARA 404
++K G+ P +HYA +VDLL+RA
Sbjct: 571 EMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRA 630
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G + A + I MP++ +V ALLSA ++
Sbjct: 631 GRLDEAMELIRGMPMKPTPAVWVALLSACRV 661
>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
mitochondrial [Vitis vinifera]
Length = 773
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 142/579 (24%), Positives = 228/579 (39%), Gaps = 158/579 (27%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------CYLFDGLFDRTIVFLDLY 61
T +VLKAC L G ++H S GF+ Y GLFDR +V +
Sbjct: 82 TVAIVLKACCGDSKL--GCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENL 139
Query: 62 HLWSRTEW----SAFGSFDGLL--SNEENEYGTALD---CSCDLEFLEQ------GKIVH 106
+ W S F D L + N G A D C+ L F G +H
Sbjct: 140 NNPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLH 199
Query: 107 GFMIKLGLELE----SDLLISLTAVCRY-----------QPNVTLRNAMISGYAKNGYAE 151
++K GL+ E + L+ + CR ++ NAM+SGYA+ G +
Sbjct: 200 SRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSG 259
Query: 152 -EAVKLFPKWM----------------------DYYIGKS--------EYRNNVIVNTVL 180
EA+ +F + + ++ +G+ Y +V V VL
Sbjct: 260 LEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVL 319
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF--DGLLSNEENEYG 238
I Y+KC ++ A + F+ +D++VV + MI S F DG+ N+ G
Sbjct: 320 ISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPNDVTFVG 379
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPN----------- 284
+ +E+G+++HG +K E S+ LI++ A +
Sbjct: 380 LIHAITMK-NLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYR 438
Query: 285 -VTLWNAMISGYAKNGYAEEAVKLF--------PKWMDY--------------------- 314
+ WN++ISGYA+NG +EA++ F P +
Sbjct: 439 EIISWNSLISGYAQNGLWQEALQTFLSALMESRPNEFTFGSVLSSIASAEAISMRHGQRC 498
Query: 315 --YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG-- 370
+I K N IV++ L+DMYAK GS+ + F T K+ V +A+ + HG
Sbjct: 499 HSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDY 558
Query: 371 ---------------------------------LGEEGWVLFHH-IRKHGIEPRHQHYAR 396
+ + G+ LF+ ++ H IEP +HY+
Sbjct: 559 EAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSS 618
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VD+L RAG A +F+ +P LSV ++LL A +I
Sbjct: 619 MVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRI 657
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 172/431 (39%), Gaps = 104/431 (24%)
Query: 73 GSFDGLLSNEENEYG-TALDCSC-DLEFLEQGKIVHGFMIKLGLELESDL---LISLTAV 127
S D YG T+L SC D + L GK +H LG+ DL L+ L AV
Sbjct: 35 ASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAV 94
Query: 128 CRY------------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY------------ 163
+ N+ L N +I GYA NG + A+ L+ K +DY
Sbjct: 95 SNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFV 154
Query: 164 ------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
Y+ KS + ++ V LIDMYAKCG V A FD+ + +D
Sbjct: 155 LKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDA 214
Query: 206 VMRSAMIVGYGL--HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGF 259
V+ ++M+ Y H + + +N E T + S D+ L G+ +HGF
Sbjct: 215 VLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGF 274
Query: 260 MIKLGLELESDL---LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEA 304
+ G + + LI + A C + V WNA+I+GYA +G A A
Sbjct: 275 GWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGA 334
Query: 305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ LF K + E R + I + + A C R LD+ + + M
Sbjct: 335 LDLFDKM------RKEDRPDHI---TFVGVLAACSR--------GRLLDEGRALYNLM-- 375
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
+R +GI P QHY ++DLL G + A+ I NM ++
Sbjct: 376 -----------------VRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSG 418
Query: 425 VRRALLSAWKI 435
V ALL++ KI
Sbjct: 419 VWGALLNSCKI 429
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 142/338 (42%), Gaps = 80/338 (23%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------RYQPNVTLR---- 137
CS L + +G+ +H ++IK G E + LI + A C R + +R
Sbjct: 158 CSA-LSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVL 216
Query: 138 -NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------------- 169
N+M++ YA+NG+ +E++ L + + +E
Sbjct: 217 WNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGW 276
Query: 170 ---YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
+++N V T LIDMYAKCGSV +A F+R +K VV +A+I GY +H + A
Sbjct: 277 RHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALD 336
Query: 225 SFDGLLSNEENEY----GTALDCSCDLEFLEQGKIVHGFMIK-----------------L 263
FD + + ++ G CS L++G+ ++ M++ L
Sbjct: 337 LFDKMRKEDRPDHITFVGVLAACSRG-RLLDEGRALYNLMVRDYGITPTVQHYTCMIDLL 395
Query: 264 GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323
G + D L +P+ +W A+++ +G E A K ++ + + N
Sbjct: 396 GHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIE--LEPDDSGN 453
Query: 324 NVIVNTVLIDMYAKCGSVD----LAPMFFDRTLDKDVV 357
VI L +MYA+ G + L + D+ + K++
Sbjct: 454 YVI----LANMYAQSGKWEGVEKLRQVMIDKRIKKNIA 487
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/478 (23%), Positives = 180/478 (37%), Gaps = 132/478 (27%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIV 56
AP+ T P VLKAC + +G VH I GF L Y G + +
Sbjct: 102 APDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALK 161
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
D W+ W++ G +SN DC + + +EL
Sbjct: 162 VFDDIPKWNVVAWTSL--IAGCISN---------DCPSE-----------AVRVYKDMEL 199
Query: 117 ESDLLISLTAVCRYQPN-VTLRNAMIS-GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174
S PN +T+ N +++ +++ A V M +S NV
Sbjct: 200 WS-----------VAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNV 248
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
I+ T ++DMYAKCGS+ A F++ +++V ++MI Y
Sbjct: 249 ILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAY------------------- 289
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
N+YG A + L+ +I G + + + + C + A++SG
Sbjct: 290 NQYGQANEA---LDLFSDMRIA-------GFDPDKATFLCVIGACAH------LGALVSG 333
Query: 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
A + Y+ K+ ++ + T L+DMYAK G + A F K
Sbjct: 334 QA---------------LHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKK 378
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------------ 384
DV +++ +G +HG GEE F +++
Sbjct: 379 DVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNH 438
Query: 385 -------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HGIEP QHY +VDLL+RAG A + + MP+E ++ ALL+ KI
Sbjct: 439 FISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKI 496
>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 576
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 122/479 (25%), Positives = 186/479 (38%), Gaps = 106/479 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVC-YLFDGLFDRTIVFLD 59
M+ + P+ +LK+C + L G +HG + GF C Y+ L D D
Sbjct: 95 MRRIGLCPSSHAVSSILKSCARVEDDLCGLLIHGHVHKFGFDACVYVQTALLDLYCKIGD 154
Query: 60 LYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG--FMIKLGLELE 117
+ +A FD + + + L +++ G + G F ++ L+
Sbjct: 155 VV--------TARKVFDEMPDKNVVSWNSLLS-----GYIKGGNLDEGQRFFDEIPLK-- 199
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177
+V N M+SGYAK G + A LF + + RN N
Sbjct: 200 ---------------DVISWNCMVSGYAKAGKMDRACYLFQQMPE--------RNFASWN 236
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHEWSAFGSFDGLLSNE 233
T +I Y CGS+ A FD ++ V MI GY +H SA FD + +
Sbjct: 237 T-MITGYVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVH--SARELFDQMDDKD 293
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD--LLISLTAVCRYQPNVTLWNAM 291
Y + C ++ + M+K L D L S+ + C N+ W
Sbjct: 294 LLSYNAMIACYAQSSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWR-- 351
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ E + F +D ++ T LID+YAKCGS+D A F
Sbjct: 352 --------WIESQINNFGIVLDDHLA-----------TALIDLYAKCGSIDKAYELFHGL 392
Query: 352 LDKDVVMRSAMTVGYGLHG-----------------------------------LGEEGW 376
+DVV SAM G G++G L EEG+
Sbjct: 393 RKRDVVAYSAMIYGCGINGRASDAVELFERMAGECIIPNLVTYTGILTAYNHAGLAEEGY 452
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
F ++ +GI P HY +VDLL RAG+ + A+K IM MP++ + V ALL A ++
Sbjct: 453 RCFISMKDNGIVPSVDHYGIMVDLLGRAGWLDEAYKLIMKMPMQPNVGVWGALLLACRL 511
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 45/285 (15%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
NV+V T L+DMY+KCG +DLA + FD ++ V + MI DG + N
Sbjct: 126 NVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMI--------------DGCMRN 171
Query: 233 EE-NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVCRYQPNVTLWN 289
E E D + + + ++ GF+ K E LE + L V +P+
Sbjct: 172 GEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGV---EPDYVTII 228
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
++++ A G + W++ ++ K ++++N+ ++ LIDMY++CG + LA F+
Sbjct: 229 SVLAACANLGALGLGL-----WINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFE 283
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--------------------IEP 389
+ + +V ++M VG+ L+G EE F+ +RK G I P
Sbjct: 284 QMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGHSGLVDEGLQFFDIMKRTRKISP 343
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
R +HY +VDL +RAG A I NMP++ V +LL+A +
Sbjct: 344 RIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACR 388
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 26/234 (11%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALP--SLLMGPRVHGQIFSLGF-----------LVCYLF 47
MQ+A V PN T +L AC P L G +H + LG + Y
Sbjct: 80 MQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSK 139
Query: 48 DGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEE-NEYGTALDCSCDLEFLEQGKIVH 106
G D + D H+ + W+ DG + N E E D + + + ++
Sbjct: 140 CGQLDLAWLMFDEMHVRNSVSWNTM--IDGCMRNGEVGEAIVLFDQMSERDAISWTSMIG 197
Query: 107 GFMIKLGLE--LESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164
GF+ K E LE + L V +P+ ++++ A G + W++ +
Sbjct: 198 GFVKKGCFEQALEWFREMQLAGV---EPDYVTIISVLAACANLGALGLGL-----WINRF 249
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ K ++++N+ ++ LIDMY++CG + LA F++ + +V ++MIVG+ L+
Sbjct: 250 VMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALN 303
>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 767
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 138/567 (24%), Positives = 210/567 (37%), Gaps = 182/567 (32%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDG------ 49
MQ V N T P +LKAC AL LL +VH + LG F L D
Sbjct: 43 MQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGH 102
Query: 50 ------LFDR-------TIVFLDLYHLWSRT-----EWSAFGSFDGLLSNEENEYG---- 87
+FD + + L +S + AFG + + +E
Sbjct: 103 AYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDV 162
Query: 88 -------TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR-------- 129
+A C L +G VHG ++K G + + L ++ + + C+
Sbjct: 163 VSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRV 222
Query: 130 ------YQPNVTLRNAMISGYAKNGYAEEAVKLF-------------------------- 157
Q +V N++ISG+ NG AE A++ F
Sbjct: 223 FNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCA 282
Query: 158 -------PKWMDYYIGKSEYR----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
W+ YI +V+V T L+DM+A+CG++ LA FD K+VV
Sbjct: 283 ELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVV 342
Query: 207 MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE--QGKIVHGFMIKLG 264
SAMI GY E G SC E L + ++ G M+ +
Sbjct: 343 CWSAMIAGY--------------------EQG-----SCPEEALRLFRQMLMEGNMVGVE 377
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYA-KNGYAEEAVKLFPKWMDYYIGKSEYRN 323
++ + L+S+ A C + + +MI YA G ++A
Sbjct: 378 VKPNAVTLVSVIAACS-RLGASRSASMIHKYAVATGLDQDAR------------------ 418
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ + LIDM AKCG ++ F + + VV S+M G+HG G+ LF
Sbjct: 419 ---IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSE 475
Query: 382 IRKHGIEPRH------------------------------------QHYARVVDLLARAG 405
+R G EP +HYA +VDLL RAG
Sbjct: 476 MRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAG 535
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSA 432
+ + A I+NMPI+ L++ +LL+A
Sbjct: 536 HLDEAHNVILNMPIKADLALWGSLLAA 562
>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Cucumis sativus]
Length = 743
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 147/347 (42%), Gaps = 87/347 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL-SN 232
V + L+ +Y +C +D A F T +KDVVM +AMI G ++ + A G F ++ SN
Sbjct: 285 VESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESN 344
Query: 233 EENEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------ 280
+ T L L + G +HG++++ G+ L+ + L+++ A C
Sbjct: 345 VKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSC 404
Query: 281 ------YQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------- 309
+ ++ WNA+++G+AKNGY + + F
Sbjct: 405 SIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAG 464
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
KW+ ++ +S ++ T L+DMY KCG+++ A FD L +D+V S + V
Sbjct: 465 ALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIV 524
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------------- 391
GYG +G GE + G+EP H
Sbjct: 525 GYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMS 584
Query: 392 ---QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+H A VVDLL+RAG + A+ F M E + V LL A ++
Sbjct: 585 PNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRV 631
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 127/292 (43%), Gaps = 61/292 (20%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +++ ++ +++MY KCG + A F+ +D+V ++++ Y S G+ + +
Sbjct: 178 FESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAY-----SKIGATEEI 232
Query: 230 LS-----------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISL 275
L ++ + +AL S L GK+VHG M+K GL ++ + L+ L
Sbjct: 233 LQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVL 292
Query: 276 TAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--- 320
CR + +V +W AMISG +N A++A+ +F + ++ + S
Sbjct: 293 YLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATL 352
Query: 321 -----------------------YRNNVIVN----TVLIDMYAKCGSVDLAPMFFDRTLD 353
R ++++ L+ MYAKC + + F++ ++
Sbjct: 353 ASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVE 412
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
KD+V +A+ G+ +G +G F+ +RK + P ++ AG
Sbjct: 413 KDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAG 464
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 59/260 (22%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-RYQPNVTLRN----------- 138
CD+ G +HG++++ G+ L+ + L+++ A C + Q + ++ N
Sbjct: 365 CDI-----GASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWN 419
Query: 139 AMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKS 168
A+++G+AKNGY + + F KW+ ++ +S
Sbjct: 420 AIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRS 479
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
++ T L+DMY KCG+++ A FD L +D+V S +IVGYG + G +
Sbjct: 480 SLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFN-----GKGEI 534
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288
L GT ++ + + HG +I GL + S+T R PN+
Sbjct: 535 ALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYE----SMTKDFRMSPNLEHR 590
Query: 289 NAMISGYAKNGYAEEAVKLF 308
++ ++ G +EA +
Sbjct: 591 ACVVDLLSRAGKVDEAYSFY 610
>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
Length = 681
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 145/349 (41%), Gaps = 88/349 (25%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSF- 226
Y+++V V + L+ +YA+ G++ A FDR +D V S M+ G+ A +
Sbjct: 139 YKDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYR 198
Query: 227 ----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT------ 276
DG+ +E G C+ + G VHG +++ G+ ++ SL
Sbjct: 199 RMREDGVKGDEVVMIGVIQACTA-ARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKN 257
Query: 277 ----AVCRY-----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
CR N W+AMISG+A+NG ++EA++LF I
Sbjct: 258 GLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSAL 317
Query: 317 -----------GKS-------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
G+S + N I+ T IDMY+KCGS+ A M F+ D+D+++
Sbjct: 318 LACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
+AM G HG G++ LF + + G+ P H
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMV 437
Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HY +VDLLAR+G A + +M E +++ ALLS
Sbjct: 438 NHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLS 486
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 146/398 (36%), Gaps = 111/398 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDR------TIVF 57
P+ T L L AC L L G V + F G+ VC L+ R +
Sbjct: 106 PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKV 165
Query: 58 LDLYHLWSRTEWSAF-GSF------------------DGLLSNEENEYGTALDCSCDLEF 98
D R WS F DG+ +E G C+
Sbjct: 166 FDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA-ARN 224
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLT----------AVCRYQPNVTLRN-----AMISG 143
+ G VHG +++ G+ ++ SL CR + RN AMISG
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284
Query: 144 YAKNGYAEEAVKLFPKWMDYYI----------------------GKS-------EYRNNV 174
+A+NG ++EA++LF I G+S + N
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
I+ T IDMY+KCGS+ A M F+ D+D+++ +AMI G H G L E
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAH---GRGQDALTLFQEM 401
Query: 235 NEYGTALDCSCDLEFL---------EQGKIVHGFMI--------------------KLGL 265
NE G D + L E+GK+ G M+ + GL
Sbjct: 402 NETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGL 461
Query: 266 -ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
E SDLL S+ A +P V +W A++SG N E
Sbjct: 462 VEEASDLLTSMKA----EPTVAIWVALLSGCLNNKKLE 495
>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 597
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 118/485 (24%), Positives = 198/485 (40%), Gaps = 137/485 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
Y L + E L+QG ++H +I+ G + S+L +S + Y
Sbjct: 40 YMKILQLCIETEDLKQGCLIHSHIIRNGFD--SNLHLSTKLIIFYVKFGETINARKVFDR 97
Query: 131 --QPNVTLRNAMISGYAKNGYAEEAVKLFP----------------------------KW 160
+ NV A ISGYAKNG+ ++A+ +F +
Sbjct: 98 MPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERG 157
Query: 161 MDYY--IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
M + I K+ + N+ V + L+D+++KCG+++ A F+ ++DVV +A+I GY
Sbjct: 158 MQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQ 217
Query: 219 EWS--AFGSFDGLLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
+++ +F F ++ G+ L S L + +HG +I+LG DL
Sbjct: 218 DFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLN 277
Query: 273 ISL-----------TAVCRYQP----NVTLWNAMISGYAKN-GYAEEAVKLFPKWMDYY- 315
SL +A Y+ +V + A+++GYA+ Y+ EA+ LF +
Sbjct: 278 GSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFM 337
Query: 316 ---------------------IGKS------EYRN--NVIVNTVLIDMYAKCGSVDLAPM 346
IG+ +Y+ +V L+DMYAK G ++ A
Sbjct: 338 EIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATR 397
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEE-------------------------------- 374
F +K+V+ +++ GYG HG G E
Sbjct: 398 AFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACSHSGL 457
Query: 375 ---GWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
GW F++ I K+ I PR +HY+ ++DL AR G A+ I M I+ S+ A+L
Sbjct: 458 TGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLWGAIL 517
Query: 431 SAWKI 435
A I
Sbjct: 518 GACSI 522
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 110/446 (24%), Positives = 167/446 (37%), Gaps = 164/446 (36%)
Query: 102 GKIVHGFMIKLGLELESDLLISLT---AVCRY--------------QPNVTLRNAMISGY 144
GK VHG IK + +L SL A C + ++ N+M++G+
Sbjct: 259 GKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGF 318
Query: 145 AKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYRNNV 174
+ GY ++A+ LF + + YI ++E N+
Sbjct: 319 VQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNL 378
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
V IDM+ KCG V++A FD +DVV + +I GY +
Sbjct: 379 NVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA----------------KM 422
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
+E+G A D+ S+ + ++ WN +ISG
Sbjct: 423 SEHGIA----------------------------RDIFDSMP-----RKDIPAWNVLISG 449
Query: 295 YAKNGYAEEAVKLFPK--------------------------------WMDYYIGKSEYR 322
Y ++G +EA+ +F + W+ YI K +
Sbjct: 450 YEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQ 509
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE--------- 373
N + T LIDMY+K G V+ A F +KDV + SAM G +HG GE
Sbjct: 510 LNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDM 569
Query: 374 --------------------------EGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGY 406
EG LF + R +G+ P+ +HY+ +VD+L RAG+
Sbjct: 570 QETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGH 629
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSA 432
A KFI MP+ SV ALL A
Sbjct: 630 LEEALKFIEGMPLAPSASVWGALLGA 655
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 33/156 (21%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD-----------------------YYIG- 317
QPN+ WN +I A + ++V +F + + + +G
Sbjct: 201 QPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGK 260
Query: 318 -------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMTVGYGL 368
K+ + ++V V LI YA CG +DLA + F+ +KD+V ++M G+
Sbjct: 261 AVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQ 320
Query: 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404
G ++ LF +R G+ P V+ A+
Sbjct: 321 GGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKT 356
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 144/633 (22%), Positives = 216/633 (34%), Gaps = 202/633 (31%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLDLYH----- 62
N T +++ C L G VH Q+ LG + YL + L + F D+
Sbjct: 77 NSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVF 136
Query: 63 ----LWSRTEWS--------------AFGSF----DGLLSNEENEYGTALDCSCDLEFLE 100
L WS AF +F D + + + L + LE
Sbjct: 137 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLE 196
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLRNAMISGYA 145
+ + +H + G+E + + LI++ + C + NV A+I A
Sbjct: 197 KAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANA 256
Query: 146 KNGYAEEAVKLFPKWMD------------------------------YYIGKSEYRNNVI 175
++ EA +L+ K + +I + +V+
Sbjct: 257 QHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVV 316
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD-------- 227
V LI MY KC + A FDR +DV+ SAMI GY + S D
Sbjct: 317 VANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLER 376
Query: 228 ----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR 280
G+ N+ CS LEQG+ +H + K+G E + L + ++ A C
Sbjct: 377 MRREGVFPNKVTFMSILKACSVH-GALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCG 435
Query: 281 --YQP-----------------------------------------NVTLWNAMISGYAK 297
Y+ NV WN MI+GYA+
Sbjct: 436 SIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQ 495
Query: 298 NGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVIV 327
+G + +L K + K ++ +V
Sbjct: 496 SGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVV 555
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
T LI MY+KCG V A FD+ ++D V +AM GYG HG+G E LF + K +
Sbjct: 556 ATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERV 615
Query: 388 EPRH------------------------------------QHYARVVDLLARAGYSNHAF 411
P QHY +VDLL RAG A
Sbjct: 616 PPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAE 675
Query: 412 KFIMNMPIELRLSVRRALLSAWK----IPMQQW 440
+FI MP E +SV ALL A K + + +W
Sbjct: 676 EFIQRMPCEPDISVWHALLGACKSHDNVQLAEW 708
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 46/207 (22%)
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-------------LIS 274
GLL N N YG ++ L E GK+VH + +LGL ++ L + S
Sbjct: 73 GLLVNS-NTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVAS 131
Query: 275 LTAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI---------------- 316
+ V R +V W++MI+ YA N + +A F + D I
Sbjct: 132 VEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNN 191
Query: 317 --------------GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
S +V V T LI MY+KCG + LA F + +++VV +A+
Sbjct: 192 YSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAI 251
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEP 389
H E + L+ + + GI P
Sbjct: 252 IQANAQHRKLNEAFELYEKMLQAGISP 278
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 147/368 (39%), Gaps = 93/368 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
Q N NAMISG + EEA +LF + R NVI T ++D YAK G +
Sbjct: 65 QRNTASWNAMISGLVRYDRVEEASRLFEEM---------PRRNVISYTAMVDGYAKIGEI 115
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
+ A F+ K+VV + MI GY + G FD E + D +
Sbjct: 116 EQARALFNCMPQKNVVSWTVMISGYVEN-----GKFD--------EAENLFEQMPDKNIV 162
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G+ K G ++ +L CR ++ WNAMI+GYA+NG EEA+KL +
Sbjct: 163 AMTAMITGY-CKEGKTDKAKILFDQIP-CR---DLASWNAMITGYAQNGSGEEALKLHSQ 217
Query: 311 WMDY------------------------------YIGKSEYRNNVIVNTVLIDMYAKCGS 340
+ + KS Y + + + LI MY KCGS
Sbjct: 218 MLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGS 277
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------- 389
+ + + F + DVV +AM + HG + F +R + +EP
Sbjct: 278 ILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 337
Query: 390 -------------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
R +H+A +VD+L+R G A+K I MP E
Sbjct: 338 CGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCG 397
Query: 425 VRRALLSA 432
+ ALL+A
Sbjct: 398 IWGALLAA 405
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 126/306 (41%), Gaps = 53/306 (17%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC---GSVDLAP 194
N++I+GY KNG +E+ +LF G +N V N+ M A C +D A
Sbjct: 10 NSIITGYWKNGCFDESKRLF--------GLMPTKNVVSWNS----MIAGCIEDERIDEAW 57
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQ 252
+F ++ +AMI G ++ S F+ + Y +D + +EQ
Sbjct: 58 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 117
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ + C Q NV W MISGY +NG +EA LF +
Sbjct: 118 ARALFN--------------------CMPQKNVVSWTVMISGYVENGKFDEAENLFEQMP 157
Query: 313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
D N++ T +I Y K G D A + FD+ +D+ +AM GY +G G
Sbjct: 158 D---------KNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSG 208
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVRR 427
EE L + K G++P H V+ + + G H ++ E R+S+
Sbjct: 209 EEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHV--LVLKSGYESRISICN 266
Query: 428 ALLSAW 433
AL++ +
Sbjct: 267 ALITMY 272
>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Cucumis sativus]
Length = 743
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 147/347 (42%), Gaps = 87/347 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL-SN 232
V + L+ +Y +C +D A F T +KDVVM +AMI G ++ + A G F ++ SN
Sbjct: 285 VESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESN 344
Query: 233 EENEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------ 280
+ T L L + G +HG++++ G+ L+ + L+++ A C
Sbjct: 345 VKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSC 404
Query: 281 ------YQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------- 309
+ ++ WNA+++G+AKNGY + + F
Sbjct: 405 SIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAG 464
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
KW+ ++ +S ++ T L+DMY KCG+++ A FD L +D+V S + V
Sbjct: 465 ALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIV 524
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------------- 391
GYG +G GE + G+EP H
Sbjct: 525 GYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMS 584
Query: 392 ---QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+H A VVDLL+RAG + A+ F M E + V LL A ++
Sbjct: 585 PNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRV 631
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 126/292 (43%), Gaps = 61/292 (20%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +++ ++ +++MY KCG + A F +D+V ++++ Y S G+ + +
Sbjct: 178 FESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAY-----SKIGATEEI 232
Query: 230 LS-----------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISL 275
L ++ + +AL S L GK+VHG M+K GL ++ + L+ L
Sbjct: 233 LQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVL 292
Query: 276 TAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--- 320
CR + +V +W AMISG +N A++A+ +F + ++ + S
Sbjct: 293 YLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATL 352
Query: 321 -----------------------YRNNVIVN----TVLIDMYAKCGSVDLAPMFFDRTLD 353
R ++++ L+ MYAKC + + F++ ++
Sbjct: 353 ASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVE 412
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
KD+V +A+ G+ +G +G F+ +RK + P ++ AG
Sbjct: 413 KDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAG 464
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 59/260 (22%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-RYQPNVTLRN----------- 138
CD+ G +HG++++ G+ L+ + L+++ A C + Q + ++ N
Sbjct: 365 CDI-----GASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWN 419
Query: 139 AMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKS 168
A+++G+AKNGY + + F KW+ ++ +S
Sbjct: 420 AIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRS 479
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
++ T L+DMY KCG+++ A FD L +D+V S +IVGYG + G +
Sbjct: 480 SLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFN-----GKGEI 534
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288
L GT ++ + + HG +I GL + S+T R PN+
Sbjct: 535 ALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYE----SMTKDFRMSPNLEHR 590
Query: 289 NAMISGYAKNGYAEEAVKLF 308
++ ++ G +EA +
Sbjct: 591 ACVVDLLSRAGKVDEAYSFY 610
>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 649
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 147/368 (39%), Gaps = 88/368 (23%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYI----GKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
N +I+GY + G+ EEA +LF D GK +R NV+ ++ Y K G + A
Sbjct: 237 NTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFA 296
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253
FDR +++D W+ S +SN E E + L
Sbjct: 297 RELFDRMVERDNC------------SWNTLISCYVQISNME-EASKLFREMPSPDVLSWN 343
Query: 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW-- 311
I+ G K L L D + N+ WN +I+GY KN + A+KLF +
Sbjct: 344 SIISGLAQKGDLNLAKDFFERMP-----HKNLISWNTIIAGYEKNEDYKGAIKLFSEMQL 398
Query: 312 --------------------MDYYIGKSEYR-------NNVIVNTVLIDMYAKCGS-VDL 343
+D Y+GK ++ + +N LI MY++CG+ VD
Sbjct: 399 EGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLPDSPINNSLITMYSRCGAIVDA 458
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLH---------------------------------- 369
+F + L KDV+ +AM GY H
Sbjct: 459 CTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFISVLNACAH 518
Query: 370 -GLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
GL EEGW F I +GIEPR +H+A +VD+L R G A I MP + +V
Sbjct: 519 AGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWG 578
Query: 428 ALLSAWKI 435
ALL A ++
Sbjct: 579 ALLGACRV 586
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 106/285 (37%), Gaps = 60/285 (21%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N +ISGYAKNG ++A+KLF ++ N + +I + G V+ A FF
Sbjct: 138 NTVISGYAKNGRMDQALKLFNAMPEH---------NAVSYNAVITGFLLNGDVESAVGFF 188
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
+ D A+I GL+ N E + + C + +VH
Sbjct: 189 RTMPEHDSTSLCALI--------------SGLVRNGELDLAAGILRECGNGDDGKDDLVH 234
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI- 316
+ N +I+GY + G+ EEA +LF D
Sbjct: 235 AY-----------------------------NTLIAGYGQRGHVEEARRLFDVIPDDDDD 265
Query: 317 ---GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
GK +R NV+ ++ Y K G + A FDR +++D + + Y E
Sbjct: 266 GNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNME 325
Query: 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
E LF + P + ++ LA+ G N A F MP
Sbjct: 326 EASKLFREMPS----PDVLSWNSIISGLAQKGDLNLAKDFFERMP 366
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 51/194 (26%)
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGK----------------IVHGFMIKLGLELES 118
FD ++ + + T + C + +E+ I+ G K L L
Sbjct: 300 FDRMVERDNCSWNTLISCYVQISNMEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAK 359
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW------------------ 160
D + N+ N +I+GY KN + A+KLF +
Sbjct: 360 DFFERMP-----HKNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISV 414
Query: 161 ----MDYYIGKSEYR-------NNVIVNTVLIDMYAKCGS-VDLAPMFFDRTLDKDVVMR 208
+D Y+GK ++ + +N LI MY++CG+ VD +F + L KDV+
Sbjct: 415 STGLVDLYLGKQLHQLVTKTVLPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITW 474
Query: 209 SAMIVGYGLHEWSA 222
+AMI GY H +A
Sbjct: 475 NAMIGGYASHGSAA 488
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 81/233 (34%), Gaps = 64/233 (27%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N +S ++G EA LF S R + + +I Y + + A F
Sbjct: 42 NKKLSNLIRSGRISEARTLF---------DSMKRRDTVTWNSMISGYVQRREIARARQLF 92
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D +DVV + ++ GY C C F+E+G+ +
Sbjct: 93 DEMPRRDVVSWNLIVSGY-------------------------FSC-CGSRFVEEGRRLF 126
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
M Q + WN +ISGYAKNG ++A+KLF ++
Sbjct: 127 ELMP--------------------QRDCVSWNTVISGYAKNGRMDQALKLFNAMPEH--- 163
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
N + +I + G V+ A FF + D A+ G +G
Sbjct: 164 ------NAVSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLCALISGLVRNG 210
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 140/535 (26%), Positives = 214/535 (40%), Gaps = 143/535 (26%)
Query: 2 QVAWVA--PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDG 49
++ WV P+ T P VL+ C LP L G VH + GF + Y+ G
Sbjct: 185 RMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG 244
Query: 50 -LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG-------------------TA 89
+F +VF D R W+A S G N+ G T+
Sbjct: 245 DIFSARLVF-DRMPRRDRISWNAMIS--GYFENDVCLEGLRLFFMMREFFVDPDLMTMTS 301
Query: 90 LDCSCDLEFLEQ-GKIVHGFMIKLGLELESDLLISLTAV-----CRYQPNVTLR------ 137
+ +C+ E+ G+ VHG++IK G E + SL + C + +
Sbjct: 302 VISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKD 361
Query: 138 ----NAMISGYAKNGYAEEAVKLFP------------------------KWMDYYIGKSE 169
AMISGY KNG E+AV+ + +D I E
Sbjct: 362 LVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE 421
Query: 170 YRNN------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+ + VIV LIDMY+KC +D A F R +K+V+ +++I+G L+ +
Sbjct: 422 FADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLN----Y 477
Query: 224 GSFDGL-------LSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELES---DL 271
SF+ L LS + N + L + L GK +H ++ GL + +
Sbjct: 478 RSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNA 537
Query: 272 LISLTAVC-RYQP----------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
L+ + C R +P +V WN +++GYA+ G AV+LF K ++ + E
Sbjct: 538 LLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDE 597
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
I T L+ ++ G V +F+ K FH
Sbjct: 598 -----ITFTSLLCACSRSGMVTDGLEYFESMEHK------------------------FH 628
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I P +HYA VVDLL RAG A++FI MPI+ ++ ALL+A +I
Sbjct: 629 ------IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRI 677
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 134/346 (38%), Gaps = 69/346 (19%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
Y+ K+ R V + L+ M+ + G + A F + ++D+ + ++ GY +
Sbjct: 119 YVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGY-----AKA 173
Query: 224 GSFDGLLS-----------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL- 271
G FD L+ + + L L L +G+ VH +I+ G E + D+
Sbjct: 174 GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVV 233
Query: 272 --LISLTAVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLF--------- 308
LI++ C + L WNAMISGY +N E ++LF
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVD 293
Query: 309 PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
P M Y+ K+ + V VN LI M++ G D A M
Sbjct: 294 PDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMV 353
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYS 407
F + KD+V +AM GY +GL E+ + + G+ P A V+ A G
Sbjct: 354 FSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG-- 411
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453
+++ I L R L+++ I +M R ID+
Sbjct: 412 ------LLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKA 451
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 148/349 (42%), Gaps = 82/349 (23%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------Q 131
AL L LE GK++HGF K E+ SD+ + V Y +
Sbjct: 109 ALKACAGLRMLELGKVIHGFA-KKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQR 167
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKW--MDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
P+ L +M++GY +N EEA+ LF + MD + G N+ L+++YAK G
Sbjct: 168 PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNS------LLNLYAKTGC 221
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN--EENEYG--TALDC 243
+A F + +KDV+ S MI Y +E + A F ++ E N +AL
Sbjct: 222 EKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQA 281
Query: 244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEE 303
LE+GK +H + +V W A++SGYA+NG A +
Sbjct: 282 CAVSRNLEEGKKIHKIAV--------------------WKDVVSWVALLSGYAQNGMAYK 321
Query: 304 AVKLFPKWMDY------------------------------YIGKSEYRNNVIVNTVLID 333
++ +F + Y+ +S + +NV V LI+
Sbjct: 322 SMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIE 381
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+Y+KCGS+ A F + +DVV+ S+M YG+HG G E +F +
Sbjct: 382 LYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQM 430
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 94/227 (41%), Gaps = 73/227 (32%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------------------- 310
P LWN MI G+A +G +++L+ K
Sbjct: 539 NPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLG 598
Query: 311 ------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
W Y+ ++ + +++V T ++DMY+KCGS+DLA FD T KD+V SAM
Sbjct: 599 ALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIA 658
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------------- 391
YG+HG G + LF + K G+ P H
Sbjct: 659 SYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIA 718
Query: 392 ---QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+YA +VDLL RAG + A I NMP+E S+ +LL A +I
Sbjct: 719 RKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRI 765
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 105/249 (42%), Gaps = 33/249 (13%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EWSAFGS 225
K+ ++ T L +YAKC S+ A FD T +V + ++ + Y +W
Sbjct: 29 KTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLR 88
Query: 226 FDGLLSNEENE------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
L+ E AL L LE GK++HGF K E+ SD+ + V
Sbjct: 89 LFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFA-KKNDEIGSDMFVGSALVE 147
Query: 280 RY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW--MDYYIGKSE 320
Y +P+ LW +M++GY +N EEA+ LF + MD + G
Sbjct: 148 LYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLP 207
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
N+ L+++YAK G +A F + +KDV+ S M Y + E LFH
Sbjct: 208 LVNS------LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFH 261
Query: 381 HIRKHGIEP 389
+ + EP
Sbjct: 262 EMIEKRFEP 270
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+W Y+ ++ + +++V T ++DMY+KCGS+DLA FD T KD+V SAMI YG+H
Sbjct: 604 EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIH 663
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 66/299 (22%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF----------------PKWMDYYIG-------- 166
PNV L N+ + Y + EE ++LF P + G
Sbjct: 64 HPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGK 123
Query: 167 --------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
E +++ V + L+++Y+KCG + A F+ D V+ ++M+ GY
Sbjct: 124 VIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQ-- 181
Query: 219 EWSAFGSFDGLLSNEENEYGTAL-------DC-SCDLEFLEQGKIVHGFMIKLGLELESD 270
N + E AL DC DL + + K G E +
Sbjct: 182 ------------QNNDPEEALALFSQMVMMDCFDGDLPLVNS---LLNLYAKTGCEKIAA 226
Query: 271 LLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330
L S + +V W+ MI+ YA N A EA+ LF + ++ + N +
Sbjct: 227 NLFSKMP----EKDVISWSTMIACYANNEAANEALNLFHEMIE-----KRFEPNSVTVVS 277
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ A +++ + KDVV A+ GY +G+ + +F ++ GI+P
Sbjct: 278 ALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQP 336
>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
Length = 767
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 138/567 (24%), Positives = 210/567 (37%), Gaps = 182/567 (32%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDG------ 49
MQ V N T P +LKAC AL LL +VH + LG F L D
Sbjct: 43 MQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGH 102
Query: 50 ------LFDR-------TIVFLDLYHLWSRT-----EWSAFGSFDGLLSNEENEYG---- 87
+FD + + L +S + AFG + + +E
Sbjct: 103 AYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDV 162
Query: 88 -------TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR-------- 129
+A C L +G VHG ++K G + + L ++ + + C+
Sbjct: 163 VSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRV 222
Query: 130 ------YQPNVTLRNAMISGYAKNGYAEEAVKLF-------------------------- 157
Q +V N++ISG+ NG AE A++ F
Sbjct: 223 FNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCA 282
Query: 158 -------PKWMDYYIGKSEYR----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
W+ YI +V+V T L+DM+A+CG++ LA FD K+VV
Sbjct: 283 ELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVV 342
Query: 207 MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE--QGKIVHGFMIKLG 264
SAMI GY E G SC E L + ++ G M+ +
Sbjct: 343 CWSAMIAGY--------------------EQG-----SCPEEALRLFRQMLMEGNMVGVE 377
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYA-KNGYAEEAVKLFPKWMDYYIGKSEYRN 323
++ + L+S+ A C + + +MI YA G ++A
Sbjct: 378 VKPNAVTLVSVIAACS-RLGASRSASMIHKYAVATGLDQDAR------------------ 418
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ + LIDM AKCG ++ F + + VV S+M G+HG G+ LF
Sbjct: 419 ---IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSE 475
Query: 382 IRKHGIEPRH------------------------------------QHYARVVDLLARAG 405
+R G EP +HYA +VDLL RAG
Sbjct: 476 MRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAG 535
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSA 432
+ + A I+NMPI+ L++ +LL+A
Sbjct: 536 HLDEAHNVILNMPIKADLALWGSLLAA 562
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 117/498 (23%), Positives = 193/498 (38%), Gaps = 141/498 (28%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------ 130
G NE G CS + E + GKI+ GF++K G ESD+ + + +
Sbjct: 37 GFYPNEYCFTGVFRACS-NKENISLGKIIFGFLLKTGY-FESDVCVGCALIDMFVKGNGD 94
Query: 131 ------------QPNVTLRNAMISGYAKNGYAEEAVKLF--------------------- 157
NV MI+ + + G++ +AV LF
Sbjct: 95 LESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154
Query: 158 ---------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKC---GSVDLAPMFFDRTLDKDV 205
+ + KS +V V L+DMYAKC GSVD A FDR +V
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214
Query: 206 VMRSAMIVGY---GLHEWSAFGSF----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 258
+ +A+I GY G + A F G + + + L +L + G+ V+
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274
Query: 259 FMIKLGL---ELESDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEE 303
++K+ L + LIS+ + C ++ N+ +N +++ YAK+ +EE
Sbjct: 275 LVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEE 334
Query: 304 AVKLFPK------------------------------WMDYYIGKSEYRNNVIVNTVLID 333
A +LF + + I KS +++N+ + LI
Sbjct: 335 AFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALIS 394
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH------------- 380
MY++CG+++ A F+ D +V+ ++M G+ HG FH
Sbjct: 395 MYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVT 454
Query: 381 -------------------HIR----KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
H + +HGI PR +HYA VVDLL R+G+ A + + +M
Sbjct: 455 YIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSM 514
Query: 418 PIELRLSVRRALLSAWKI 435
P + V R L A ++
Sbjct: 515 PFKADALVLRTFLGACRV 532
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 124/568 (21%), Positives = 208/568 (36%), Gaps = 173/568 (30%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGF---------------------LVCYLFDGLFDR 53
++ AC + +G VHG+I GF VC LF+ + R
Sbjct: 138 FLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHR 197
Query: 54 TIV----FLDLYHLWSRTEWSAFGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKI 104
++ + Y L A FD G+L +E C+ L+ LE GK
Sbjct: 198 DVISWNTMISCYVLKGMYR-EALDLFDEMLVSGVLPDEITMVSLVSTCA-KLKDLEMGKR 255
Query: 105 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164
+H +++ L + LL N ++ Y+K G +EA L +
Sbjct: 256 LHLYIVDNKLWIRGSLL----------------NCLVDMYSKCGKMDEAHGLLSRC---- 295
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSA 222
E +V++ T L+ Y K +D A FD+ ++ +V + M+ GY G + +
Sbjct: 296 ---DESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCES 352
Query: 223 FGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISL 275
F + + +E T L LE + G+ VH F++ G+ ++ L L+ L
Sbjct: 353 LELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDL 412
Query: 276 TAVCRY-------------------------------------------QPNVTLWNAMI 292
A C + ++ WN M+
Sbjct: 413 YAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMV 472
Query: 293 SGYAKNGYAEEAVKLFPK------------------------------WMDYYIGKSEYR 322
+ Y K+ E+ ++F K W++ YI K+E
Sbjct: 473 NAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIG 532
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+ ++ T LIDMY KCG V++A F + ++K+V + +AM Y + G E L+ +
Sbjct: 533 IDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEM 592
Query: 383 RKHGIEPRH------------------------------------QHYARVVDLLARAGY 406
+ G++P H HY +VDLL R G+
Sbjct: 593 EERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGH 652
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWK 434
KFI MPIE +S+ +L+ A +
Sbjct: 653 LEETVKFIERMPIEPDVSIWSSLMRACR 680
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 136/325 (41%), Gaps = 36/325 (11%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M+ V P+ VL ACV L +G VH I + G LV DG + LDL
Sbjct: 359 MRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLV----DGFLGNAL--LDL 412
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG---------KIVHGFMIK 111
Y + + A +F+ L + + LD C +++ K + +
Sbjct: 413 YAKCGKLD-EALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTM 471
Query: 112 LGLELESDLLI-SLTAVCRYQ-----PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
+ ++ DL S C+ Q P+ T +++S AK G + W++ YI
Sbjct: 472 VNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGI-----WVNVYI 526
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
K+E + ++ T LIDMY KCG V++A F + ++K+V + +AM+ Y + E A +
Sbjct: 527 EKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAM-EGQALEA 585
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
D L EE G D + L HG ++ G + + L + P +
Sbjct: 586 IDLYLEMEER--GVKPDHVTFIALL--AACSHGGLVDEGYKYFNKLRSFYNII----PTI 637
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPK 310
+ M+ + G+ EE VK +
Sbjct: 638 HHYGCMVDLLGRVGHLEETVKFIER 662
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 171/434 (39%), Gaps = 129/434 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
E+G+ +H ++KLG EL+ RY ++IS YA+NG E+A K+F
Sbjct: 99 FEEGRQIHAQVMKLGCELD-----------RYA-----HTSLISMYARNGRLEDARKVF- 141
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
+ +V+ T LI YA G V A FD ++DVV +AMI GY
Sbjct: 142 --------DXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVEN 193
Query: 216 -GLHEWSAFGSFDGLL-SNEENEYGT---ALDCSCDLEFLEQGKIVH------------- 257
G E A F ++ +N + GT L +E G+ +H
Sbjct: 194 CGYEE--ALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSL 251
Query: 258 -------GFMIKLG-LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
G K G +E+ S L L+ C+ +V WN +I GY +EA+ LF
Sbjct: 252 KIVNAFIGLYSKCGDVEIASGLFEGLS--CK---DVVSWNTLIGGYTHMNLYKEALLLFQ 306
Query: 310 ------------------------------KWMDYYIGK--SEYRNNVIVNTVLIDMYAK 337
+W+ YI K N + T LIDMYAK
Sbjct: 307 EMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAK 366
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-------- 389
CG ++ A F+ + K + +AM G+ +HG + LF +RK+GIEP
Sbjct: 367 CGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGL 426
Query: 390 -------------RH---------------QHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
RH +HY ++DLL AG A + I MP+E
Sbjct: 427 LSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEP 486
Query: 422 RLSVRRALLSAWKI 435
+ +LL A K+
Sbjct: 487 DGVIWCSLLKACKM 500
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 119/284 (41%), Gaps = 32/284 (11%)
Query: 113 GLELESDLLISLTAVCR-----YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 167
GL SDL+ L R + PN ++ AK+ EE ++ + M
Sbjct: 57 GLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCEL 116
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGS 225
Y +T LI MYA+ G ++ A FD + +DVV +A+I GY SA
Sbjct: 117 DRY-----AHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKV 171
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
FD + + + + ++ G++ G E +L + +P+
Sbjct: 172 FDXI---------------TERDVVSWNAMITGYVENCGYEEALELFKEMMRT-NVRPDE 215
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+++S A++G E ++ D++ S + IVN I +Y+KCG V++A
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLK---IVNA-FIGLYSKCGDVEIAS 271
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
F+ KDVV + + GY L +E +LF + + G P
Sbjct: 272 GLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 315
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 112/435 (25%), Positives = 163/435 (37%), Gaps = 131/435 (30%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVCR--------- 129
+++ AL + L+ G+ + + +K GL + +L SL A CR
Sbjct: 118 DQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLF 177
Query: 130 ---YQPNVTLRNAMISGYAKNGYAEEAVKLFP---------------------------- 158
+ V + NA+I+ Y KNG E V++F
Sbjct: 178 DAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAK 237
Query: 159 --KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
KW+ Y+ + N + T LIDMYAKCG + A FD M+S +V
Sbjct: 238 LGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDG-------MQSRDVVA-- 288
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
WSA S Y A C E+ L S
Sbjct: 289 ---WSAMIS----------GYTQADQCR-----------------------EALALFSEM 312
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+ +PN +++S A G E KW+ YI + +I+ T L+D YA
Sbjct: 313 QLAEVEPNDVTMVSVLSACAVLGALETG-----KWVHSYIRRKRLSLTIILGTALVDFYA 367
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------ 384
KCG +D A F+ K+ +A+ G +G G E LF +RK
Sbjct: 368 KCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIG 427
Query: 385 ------------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+GI+PR +HY VVDLL RAG + A++FI MPIE
Sbjct: 428 VLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIE 487
Query: 421 LRLSVRRALLSAWKI 435
+ RALLS+ +
Sbjct: 488 PNAVIWRALLSSCAV 502
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 164/423 (38%), Gaps = 114/423 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRN 138
L F++ G +HG + K GL SDL + + Y Q + N
Sbjct: 138 LGFVKGGLQIHGILRKTGLC--SDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFN 195
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
+MI GY K G E A +LF + E +N + N+++ VD+A F
Sbjct: 196 SMIDGYVKRGLIESARELFD------LMPREVKNLISWNSIISGYAQTSDGVDIASNLFA 249
Query: 199 RTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
+KD++ ++MI GY H A FD + + + T +D L F+ Q K +
Sbjct: 250 EMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTL 309
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------- 309
M +V +N+M++GY +N Y EA+++F
Sbjct: 310 FDQM--------------------PHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESH 349
Query: 310 ----------------------KWMD--YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
K MD YI + ++ + LIDMY+KCGS+ A
Sbjct: 350 LSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAM 409
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------------------- 382
+ F+ +K + +AM G +HGLGE + + I
Sbjct: 410 LVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSG 469
Query: 383 -------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
RKH IEPR QHY +VD+L+R+G A I MPIE + R
Sbjct: 470 LVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTF 529
Query: 430 LSA 432
L+A
Sbjct: 530 LTA 532
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 158/423 (37%), Gaps = 134/423 (31%)
Query: 125 TAVCRY------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------DYY-------- 164
T+V RY + NV N MI Y N EA+ +F + D+Y
Sbjct: 87 TSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKA 146
Query: 165 ----------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 208
I K N+ + L+ MY KCG + A D+ +DVV
Sbjct: 147 CSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSW 206
Query: 209 SAMIVGYGLHEWSAFGSFDGLLS--------NEENEYGTALDCSCDLEF--LEQGKIVHG 258
++M+ GY + G FD L N ++ GT S + + LE + +H
Sbjct: 207 NSMVAGY-----AQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHN 261
Query: 259 FMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF---------- 308
++ + N+ WN MI+ Y N EAV LF
Sbjct: 262 MFERMT-----------------KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKP 304
Query: 309 --------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+ + YI K R N+++ L+DMYAKCG ++ A F
Sbjct: 305 DAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVF 364
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF----------------------------- 379
D+ +DVV ++M YG G G + LF
Sbjct: 365 DKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLD 424
Query: 380 ---HHIR----KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
H+ R ++GI PR +H+A +VDL RAG A+ FI MP+E V ALLSA
Sbjct: 425 QGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484
Query: 433 WKI 435
++
Sbjct: 485 CRV 487
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 156/403 (38%), Gaps = 85/403 (21%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-----LFDRTIVFLDLYH 62
P+ T P VLKAC L +L +G +VH I +G L LF G ++ + +
Sbjct: 135 PDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVG-LDTNLFIGNALVAMYGKCGCLREARK 193
Query: 63 LWSRTEWSAFGSFDGLLSN--EENEYGTALDCSCDLEFL----EQGKIVHGFMIKLGLEL 116
+ + + S++ +++ + ++ AL+ +++ L + G + + L
Sbjct: 194 VLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL 253
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLF------------------- 157
E+ I + N+ N MI+ Y N EAV LF
Sbjct: 254 ENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLL 313
Query: 158 -----------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
+ + YI K R N+++ L+DMYAKCG ++ A FD+ +DVV
Sbjct: 314 PACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVV 373
Query: 207 MRSAMIVGYGL--HEWSAFGSFDGLLSNEEN----EYGTALDCSCDLEFLEQG------- 253
++M+ YG + A F +L + +N + + L L+QG
Sbjct: 374 SWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMM 433
Query: 254 --------KIVH-GFMIKL-GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY--- 300
+I H M+ L G E + S +PN +W A++S +
Sbjct: 434 TEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDI 493
Query: 301 ----AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
A+ +L PK YY+ +L ++YAK G
Sbjct: 494 GLVAADLLFQLAPKQSGYYV-------------LLSNIYAKAG 523
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 28/233 (12%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEEN-- 235
L+ Y+ G +A FDR+L+K+VV + MI Y + A F +LS N
Sbjct: 77 LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136
Query: 236 --EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP---------- 283
+ L L+ L G VH ++K+G L+++L I V Y
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVG--LDTNLFIGNALVAMYGKCGCLREARKV 194
Query: 284 -------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+V WN+M++GYA++G ++A+++ K MD + + + + Y
Sbjct: 195 LDQMPYRDVVSWNSMVAGYAQSGQFDDALEIC-KEMDSL--NLNHDAGTMASLSPVVCYT 251
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+V F+R K+++ + M Y + + E LF + + G++P
Sbjct: 252 SLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKP 304
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 140/334 (41%), Gaps = 65/334 (19%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLAPMF 196
N+M++GY G E A +LF + +ID Y K G VD A
Sbjct: 178 NSMVAGYVACGELELAQELF---------DGMPLRDAFSWATMIDAYGKRSGGVDRAREL 228
Query: 197 FDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
FD T ++D+V +MI GY G D E + + + +V
Sbjct: 229 FDETPNRDLVCWCSMIDGYARQ-----GRMD--------EARALFEEMPERNVISWSIVV 275
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316
G+ ++ G E+ L C +P+ + A+ G E+ +W+ Y+
Sbjct: 276 DGY-VRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQG-----RWLHSYL 329
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH------- 369
K + +V+V T LIDMY KCG +DL + F+ DK VV + M +G G H
Sbjct: 330 EKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAV 389
Query: 370 ----------------------------GLGEEGWVLFHHIRKH-GIEPRHQHYARVVDL 400
GL EG +FH +RK G++P+ +HY +VDL
Sbjct: 390 KLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDL 449
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
L RAG+ +HA I MP+E + +LL+A +
Sbjct: 450 LGRAGHLDHARHAIETMPMEPTPELWGSLLAACR 483
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVD 342
++ WN+M++GY G E A +LF + +ID Y K G VD
Sbjct: 173 DLVSWNSMVAGYVACGELELAQELF---------DGMPLRDAFSWATMIDAYGKRSGGVD 223
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
A FD T ++D+V +M GY G +E LF + + + ++ VVD
Sbjct: 224 RARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNV----ISWSIVVDGYV 279
Query: 403 RAGYSNHAFKFIMNM 417
R G + A + M
Sbjct: 280 RCGEPSEALELFQRM 294
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 121/484 (25%), Positives = 192/484 (39%), Gaps = 119/484 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V PN T P + K+C + G ++H L L V + H+++
Sbjct: 127 VQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLA---------LHFNPHVHTSVIHMYA 177
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
F D S + + ++ G++ + L+ L +
Sbjct: 178 SVGEMDFARL-------------VFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIP 224
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLF---------------------------- 157
+V NAMISGY ++G EEA+ F
Sbjct: 225 V-----KDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSG 279
Query: 158 --PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
KW+ ++ + + +N+ + LIDMY KCG D+A FD +KDV+ + MI GY
Sbjct: 280 ELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGY 339
Query: 216 ---GLHEWSAFGSFDGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
L+E A F+ +L N+ G C+C L L+ GK VH ++ K L
Sbjct: 340 SYLSLYE-EALALFEVMLRSNVKPNDVTFLGILHACAC-LGALDLGKWVHAYIDK-NLRN 396
Query: 268 ESDL-----LISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
S+ LI + A C + N+ WNAM+SG+A +G+AE A+ LF +
Sbjct: 397 SSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSE 456
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ K +R + I ++ + G VDL +F R++
Sbjct: 457 ----MVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYF-RSM------------------ 493
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
I+ +GI P+ QHY ++DLLARA A + NM +E ++ +LL
Sbjct: 494 -----------IQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLL 542
Query: 431 SAWK 434
SA K
Sbjct: 543 SACK 546
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 129/338 (38%), Gaps = 93/338 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------LVCY--- 45
MQ A V PN T +VL AC S +G + + GF + C
Sbjct: 254 MQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGE 313
Query: 46 ------LFDGLFDRTIV----------FLDLYHLWSRTEWSAFGSFDGLLS-----NEEN 84
LFDG+ ++ ++ +L LY A F+ +L N+
Sbjct: 314 TDIARELFDGIEEKDVISWNTMIGGYSYLSLYE-------EALALFEVMLRSNVKPNDVT 366
Query: 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAVC----------- 128
G C+C L L+ GK VH ++ K L S+ LI + A C
Sbjct: 367 FLGILHACAC-LGALDLGKWVHAYIDK-NLRNSSNASLWTSLIDMYAKCGCIEAAERVFR 424
Query: 129 -RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
+ N+ NAM+SG+A +G+AE A+ LF + + K +R + I ++ +
Sbjct: 425 SMHSRNLASWNAMLSGFAMHGHAERALALFSE----MVNKGLFRPDDITFVGVLSACTQA 480
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDL 247
G VDL +F +MI YG +S + YG +D
Sbjct: 481 GLVDLGHQYF-----------RSMIQDYG-------------ISPKLQHYGCMIDLLARA 516
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
E E+ +I+ M + +E + + SL + C+ V
Sbjct: 517 EKFEEAEIL---MKNMEMEPDGAIWGSLLSACKAHGRV 551
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 140/568 (24%), Positives = 216/568 (38%), Gaps = 162/568 (28%)
Query: 2 QVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG------------ 49
++W P+ T P V KAC + S+ G H GF+ +F G
Sbjct: 120 SLSWT-PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFM-SNVFVGNALVAMYSRCGS 177
Query: 50 LFDRTIVFLDLYHLWSRTEW-SAFGSFDGL---------LSNEENEYG---------TAL 90
L D VF D +W W S S+ L S NE+G L
Sbjct: 178 LSDARKVF-DEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVL 236
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA 150
+ GK HGF + S+++ N+ + N ++ YAK G
Sbjct: 237 PPCASVGTRSLGKQFHGFAVT------SEMI----------QNMFVGNCLVDMYAKFGMM 280
Query: 151 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK----DVV 206
+EA +F +V+ ++ Y++ G + A F++ ++ DVV
Sbjct: 281 DEANTVFSNMP---------VKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVV 331
Query: 207 MRSAMIVGYGLHE--WSAFGSFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFM 260
SA I GY + A G +LS+ + NE + L + L GK +H +
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391
Query: 261 IKLGLELESD----------LLISLTAVCRY--------------QPNVTLWNAMISGYA 296
IK ++L + LI + A C+ + +V W MI GY+
Sbjct: 392 IKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYS 451
Query: 297 KNGYAEEAVKLFPKWMD------------------------YYIGKSEY----RNN---- 324
++G A +A++L + + IGK + RN
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAV 511
Query: 325 -VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ V+ LIDMYAKCG + A + FD ++K+ V +++ GYG+HG GEE +F +R
Sbjct: 512 PLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMR 571
Query: 384 K------------------------------------HGIEPRHQHYARVVDLLARAGYS 407
+ G+ P +HYA +VDLL RAG
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRL 631
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
N A + I MP+E V ALLS +I
Sbjct: 632 NAALRLIEEMPMEPPPVVWVALLSCCRI 659
>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
Length = 781
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 190/483 (39%), Gaps = 135/483 (27%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA-------------VCRYQP 132
+ + C L L++G+ HG +IKLGLE + SL A V P
Sbjct: 110 FPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMP 169
Query: 133 --NVTLRNAMISGYAKNGYAEEAVKLFPKWMDY--------------------------- 163
++ N M+ GY NG A+ F + D
Sbjct: 170 VRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGK 229
Query: 164 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
Y+ + ++ V T L+DMY KCG V A F + VV + MI GY L+E
Sbjct: 230 EIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNE 289
Query: 220 W--SAFGSFDGLLSNE-ENEYGTALD--CSC-DLEFLEQGKIVHGFMIKLG----LELES 269
AF F + + + E TA++ +C E G+ VHG++++ + LE+
Sbjct: 290 RPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLET 349
Query: 270 DLLISLTAVCRYQP---------NVTL--WNAMISGYAKNGYAEEAVKLF------PKWM 312
LL V + + N TL WN MI+ Y EA+ LF P +
Sbjct: 350 ALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYP 409
Query: 313 DYY-------------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
DY+ IG N +I+N VL MYA+ G V +
Sbjct: 410 DYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVL-HMYARSGDVVASREI 468
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLG----------------------------------- 372
FD+ + KDV+ + M +GY +HG G
Sbjct: 469 FDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLV 528
Query: 373 EEGWVLFH-HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+EGW+ F+ ++++G+ P+ +HY + DLL R G +FI +MPI+ V +LL+
Sbjct: 529 DEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLT 588
Query: 432 AWK 434
A +
Sbjct: 589 ASR 591
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 147/598 (24%), Positives = 223/598 (37%), Gaps = 166/598 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LVCY------ 45
M+V V + T P VLKAC + + G +HG I G+ LV
Sbjct: 1 MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60
Query: 46 ------LFDGLFDRTIV-----FLDLYHLWSRTEWSAFGSFDGLLSNE--ENEYG--TAL 90
LFD + +R V + Y L + A G F + N Y AL
Sbjct: 61 ILGARKLFDRMNERNDVVSWNSIISAYSLNGQC-MEALGLFREMQKAGVGANTYTLVAAL 119
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRY---------------QPNV 134
D F + G +H ++K L+ + +L A+ R+ + N+
Sbjct: 120 QACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNI 179
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDY------------------------------Y 164
T N+MI+G+ +NG EA++ F D Y
Sbjct: 180 TW-NSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAY 238
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
K+ +N+ + LIDMY+KC V A + FD+ ++KD++ + +I Y +
Sbjct: 239 AMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEA 298
Query: 225 -------SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISL 275
G+ + T L CS L L K VHG+ +K GL + +++I +
Sbjct: 299 LKLLRKVQTKGMDVDTMMIGSTLLACS-GLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDV 357
Query: 276 TAVC---RYQ---------PNVTLWNAMISGYAKNGYAEEAVKLF--------------- 308
A C Y +V W +MIS Y NG A EA+ +F
Sbjct: 358 YADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITL 417
Query: 309 ---------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
K + +I + + L+DMYA CGS++ A F T
Sbjct: 418 VSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRS 477
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFH----------HIR-------------------- 383
K +V+ + M YG+HG G+ LF HI
Sbjct: 478 KSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRL 537
Query: 384 ------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K+ +EP +HYA +VDLL RA + A+ F+ +M IE V A L A +I
Sbjct: 538 LETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRI 595
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 111/440 (25%), Positives = 179/440 (40%), Gaps = 119/440 (27%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR--------- 129
E Y + L DL+ ++ G+ +H + +E++ L L+ + C
Sbjct: 100 ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIF 159
Query: 130 ---YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
V L N +++GYAK G E++ LF + + I +
Sbjct: 160 DKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR------------------- 200
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDC 243
V+ A FD D+DV+ ++MI GY GL E F+ +L L
Sbjct: 201 ---VESARKLFDELGDRDVISWNSMISGYVSNGLSE-KGLDLFEQML---------LLGI 247
Query: 244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--QPNVTLWNAMISGYAKNGYA 301
+ DL + ++ + L + +S L S V + +V W +MI+GYA+ G +
Sbjct: 248 NTDLATMVSVELTLNNCL-LDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLS 306
Query: 302 EEAVKLFPKW------------------------------MDYYIGKSEYRNNVIVNTVL 331
+ +V+LF + + +I ++ + + V L
Sbjct: 307 DMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANAL 366
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-- 389
+DMY KCG++ LA + FD +KD+V + M GYG+HG G E F+ +R GIEP
Sbjct: 367 VDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 426
Query: 390 ----------------------------------RHQHYARVVDLLARAGYSNHAFKFIM 415
+ +HYA +VDLLARAG + A+KFI
Sbjct: 427 VSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK 486
Query: 416 NMPIELRLSVRRALLSAWKI 435
MPIE ++ ALL +I
Sbjct: 487 MMPIEPDATIWGALLCGCRI 506
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 157/380 (41%), Gaps = 112/380 (29%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG-- 224
K+ Y +V + T LI +Y KC S+ A FD +++VV +AMI Y +++
Sbjct: 271 KTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALN 330
Query: 225 --------SFDGL-------LSN--------EENEYGTAL---DCSCDLEFLEQGKIVHG 258
S G+ LSN E NE+ A C+ L F+ G+ +H
Sbjct: 331 LFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFI-LGRQIHS 389
Query: 259 FMIKLGLE----LESDLL-----------ISLTAVCRYQPNVTLWNAMISGYAKNGYAEE 303
+IKL E + S LL C + +V A+ISGYA+ G EE
Sbjct: 390 LIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEE 449
Query: 304 AVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVLID 333
A++LF K + ++ +SE + V++ LID
Sbjct: 450 ALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLID 509
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--------- 384
MY+KCG++ + FD ++ V+ +AM VGY HG G E LF +R+
Sbjct: 510 MYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSV 569
Query: 385 ----------HG-------------------IEPRHQHYARVVDLLARAGYSNHAFKFIM 415
HG +EP+ +HY VVDLL R+G AF+FI
Sbjct: 570 TILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIK 629
Query: 416 NMPIELRLSVRRALLSAWKI 435
MP E ++ +LL A ++
Sbjct: 630 KMPFEPTAAIWGSLLGACRV 649
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 49/186 (26%)
Query: 81 NEENEYGTAL---DCSCDLEFLEQGKIVHGFMIKLGLE----LESDLL-----------I 122
E NE+ A C+ L F+ G+ +H +IKL E + S LL
Sbjct: 361 TEPNEFTFATVLTSCTSSLGFI-LGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEA 419
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------ 158
C + +V A+ISGYA+ G EEA++LF
Sbjct: 420 RTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGL 479
Query: 159 ------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI 212
K + ++ +SE + V++ LIDMY+KCG++ + FD ++ V+ +AM+
Sbjct: 480 AALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAML 539
Query: 213 VGYGLH 218
VGY H
Sbjct: 540 VGYSKH 545
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 141/535 (26%), Positives = 214/535 (40%), Gaps = 143/535 (26%)
Query: 2 QVAWVA--PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDG 49
++ WV P+ T P VL+ C LP L G VH + GF + Y+ G
Sbjct: 185 RMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCG 244
Query: 50 -LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG-------------------TA 89
+F +VF D R W+A S G N+ G T+
Sbjct: 245 DIFSARLVF-DRMPRRDRISWNAMIS--GYFENDVCLEGLRLFFMMREFFVDPDLMTMTS 301
Query: 90 LDCSCDLEFLEQ-GKIVHGFMIKLGLELESDLLISLTAV-----CRYQPNVTLR------ 137
+ +C+ E+ G+ VHG++IK G E + SL + C + +
Sbjct: 302 VISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKD 361
Query: 138 ----NAMISGYAKNGYAEEAVKLFP------------------------KWMDYYIGKSE 169
AMISGY KNG E+AV+ + +D I E
Sbjct: 362 LVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE 421
Query: 170 YRNN------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+ + VIV LIDMY+KC +D A F R +K+V+ +++I+G L+ +
Sbjct: 422 FADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLN----Y 477
Query: 224 GSFDGL-------LSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--- 271
SF+ L LS + N + L + L GK +H ++ GL + L
Sbjct: 478 RSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNA 537
Query: 272 LISLTAVC-RYQP----------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
L+ + C R +P +V WN +++GYA+ G AV+LF K ++ + E
Sbjct: 538 LLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDE 597
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
I T L+ ++ G V +F+ K FH
Sbjct: 598 -----ITFTSLLCACSRSGMVTDGLEYFESMEHK------------------------FH 628
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I P +HYA VVDLL RAG A++FI MPI+ ++ ALL+A +I
Sbjct: 629 ------IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRI 677
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 134/346 (38%), Gaps = 69/346 (19%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
Y+ K+ R V + L+ M+ + G + A F + ++D+ + ++ GY +
Sbjct: 119 YVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGY-----AKA 173
Query: 224 GSFDGLLS-----------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL- 271
G FD L+ + + L L L +G+ VH +I+ G E + D+
Sbjct: 174 GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVV 233
Query: 272 --LISLTAVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLF--------- 308
LI++ C + L WNAMISGY +N E ++LF
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVD 293
Query: 309 PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
P M Y+ K+ + V VN LI M++ G D A M
Sbjct: 294 PDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMV 353
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYS 407
F + KD+V +AM GY +GL E+ + + G+ P A V+ A G
Sbjct: 354 FSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG-- 411
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453
+++ I L R L+++ I +M R ID+
Sbjct: 412 ------LLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKA 451
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 143/571 (25%), Positives = 217/571 (38%), Gaps = 176/571 (30%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTIVFLDLYHLWSR 66
P+ T P VLKAC +PS G VH +F+ GF ++ +GL + +Y
Sbjct: 143 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGL-------VSMYGRCGA 195
Query: 67 TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM--------IKLGLELES 118
E +A FD E E G + + IV +M +K+ +
Sbjct: 196 WE-NARQVFD-----EMRERGVG-------DLVSWNSIVAAYMQGGDSIRAMKMFERMTE 242
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
DL I AV NV A + +++ K + Y +S +V V
Sbjct: 243 DLGIRPDAVSLV--NVLPACASVGAWSRG-----------KQVHGYALRSGLFEDVFVGN 289
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----------GLHE--------- 219
++DMYAKCG ++ A F+R KDVV +AM+ GY GL E
Sbjct: 290 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 349
Query: 220 ----WSA-----------FGSFD----GLLSNEENEYGTA---LDCSCDLEFLEQGKIVH 257
WSA F + D LL E T L L GK H
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409
Query: 258 GFMIKLGLELESD----------LLISLTAVCRYQP--------------NVTLWNAMIS 293
IK L L+ + LI + + C+ +V W +I
Sbjct: 410 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 469
Query: 294 GYAKNGYAEEAVKLFPKWMD--------------------------------YYIGKSEY 321
G A++G A EA++LF + + Y+ ++ +
Sbjct: 470 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 529
Query: 322 RNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ ++ V LIDMY+K G VD A + FD ++ V +++ GYG+HG GEE +F+
Sbjct: 530 ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFY 589
Query: 381 HIRK------------------------------------HGIEPRHQHYARVVDLLARA 404
++K G+ P +HYA +VDLL+RA
Sbjct: 590 EMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRA 649
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G + A + I MP++ +V ALLSA ++
Sbjct: 650 GRLDEAMELIRGMPMKPTPAVWVALLSACRV 680
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 173/423 (40%), Gaps = 128/423 (30%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKS 168
Q ++ N+MI Y++ Y +E + L+ MD +G+
Sbjct: 46 QRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEI 105
Query: 169 --------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
Y +V V + ++++YAK G +D A + FD+ + +DVV + MI G+
Sbjct: 106 IWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFA-QSG 164
Query: 221 SAFGSFD--GLLSNEENE------YGTALDCSC--DLEFLEQGKIVHGFMIKLGLELESD 270
+ D + E E G C+ D +F G VHG M++ + +++
Sbjct: 165 RPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKF---GLSVHGHMVRREMNMDNV 221
Query: 271 LLISLTAVCRYQPN-----------------VTLWNAMISGYAKNGYAEEAVKLFPKWMD 313
L SL + Y N V W A+ISG+A+NG+A + + + +
Sbjct: 222 LQTSL--IDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQN 279
Query: 314 ----------------------YYIGKSEYRNNV-------IVNTVLIDMYAKCGSVDLA 344
+GKS + + V + T LIDMYAKCG++ A
Sbjct: 280 SGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVSGTALIDMYAKCGALTFA 339
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLG-------------------------------- 372
FD+ +D+++ +AM YG+HG G
Sbjct: 340 RALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHS 399
Query: 373 ---EEGWVLFH-HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRA 428
EEG FH I K I+P +HYA +VDLL+RAG A++ I +M I+ L++ A
Sbjct: 400 GLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVA 459
Query: 429 LLS 431
LLS
Sbjct: 460 LLS 462
>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 113/471 (23%), Positives = 184/471 (39%), Gaps = 124/471 (26%)
Query: 78 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG---LELESDLLISLTAVCRY---- 130
L +E Y ++ L+QGK +H + G L + LI+L C
Sbjct: 24 FLRSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIA 83
Query: 131 --------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY------------------- 163
Q N+ A+I+ A+ G+ + A+++F +
Sbjct: 84 RKLFDKIPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACG 143
Query: 164 YIG-------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
++G K + + V++ LI MY+KCG V A FD + KD+V +A
Sbjct: 144 HVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNA 203
Query: 211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
++ GY G + LS EN ++ + + ++ GF K E+ S+
Sbjct: 204 VVSGYAQQ-----GLPNEALSLVENMKLMGVNPN----VVTWNALISGFAQKCDREMVSE 254
Query: 271 LLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------ 312
+ L R +P+V W +++SG+ +N EEA F K +
Sbjct: 255 IF-RLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPAC 313
Query: 313 ----DYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
GK + +++ V + L+DMYAKCG + A F + +K+ V +
Sbjct: 314 ATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMN 373
Query: 361 AMTVGYGLHGLGEEGWVLFHHIR------------------------------------- 383
+M GY HG EE LF+ +
Sbjct: 374 SMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQE 433
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
K+ IEPR +HYA +VDL RAG A+ I +MP++ L V ALL+A +
Sbjct: 434 KYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACR 484
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/418 (23%), Positives = 171/418 (40%), Gaps = 100/418 (23%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
LE G+ +HG ++K GL+ L+ + +C + +V N +IS
Sbjct: 134 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 193
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
Y K G EE+ +LF K + Y+ + +N
Sbjct: 194 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 253
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
+++ +IDMYA CG +D A F ++D++ + ++ G+ + G D +
Sbjct: 254 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGF-----TNLGEIDVARN-- 306
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
D + +++ ++ G++ + +L ++ A +P+ ++++
Sbjct: 307 ------YFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT-NVKPDEFTMVSVLT 359
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
A G E +W+ YI +++ +N++ V LIDMY KCG VD A F
Sbjct: 360 ACAHLGALE-----LGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 414
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK----------------------------- 384
+D +AM VG ++G GE+ +F ++ K
Sbjct: 415 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 474
Query: 385 -------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HGIEP HY +VDLLARAG A++ I NMPI+ V ALL+ ++
Sbjct: 475 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRV 532
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 125/316 (39%), Gaps = 71/316 (22%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FP---------------KW 160
+PN+ + N MI GY++ + + V L FP +
Sbjct: 80 EPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQ 139
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ ++ K + NV V+T L+ MY CG +D A FD DV+ + +I Y
Sbjct: 140 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAY----- 194
Query: 221 SAFGSFDG-----LLSNEENEYGTA------LDCSCDLEFLEQGKIVHGFMIKLGLELES 269
+ G F+ L+ ++ T L L+ L GK VH ++
Sbjct: 195 NKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN------- 247
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
C+ + N+ L NAMI YA G + A+ +F +S ++I T
Sbjct: 248 ---------CKVESNLVLENAMIDMYADCGEMDSALGIF---------RSMNNRDIISWT 289
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
++ + G +D+A +FD+ +KD V +AM GY +E LF +++ ++P
Sbjct: 290 TIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKP 349
Query: 390 RHQHYARVVDLLARAG 405
V+ A G
Sbjct: 350 DEFTMVSVLTACAHLG 365
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 37/187 (19%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKL---------------FP---------------KW 311
+PN+ +WN MI GY++ + + V L FP +
Sbjct: 80 EPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQ 139
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ ++ K + NV V+T L+ MY CG +D A FD DV+ + + Y G
Sbjct: 140 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 199
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVR 426
EE LF + + P V+ + R G H+ ++ N +E L +
Sbjct: 200 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS--YVKNCKVESNLVLE 257
Query: 427 RALLSAW 433
A++ +
Sbjct: 258 NAMIDMY 264
>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 129/518 (24%), Positives = 205/518 (39%), Gaps = 135/518 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSL---GFLVCYLFDGLFDRTIVFLDLYH---LWSRTEW 69
+L+ C L G VH + L GF++ +++ L + F ++H L+
Sbjct: 65 ILQECTDAGDLRTGMSVHTYLVKLNINGFIL--IWNKLLSLYLKFGHIHHAHQLFDTMPR 122
Query: 70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL----- 124
SF+ ++S ALD +++ + + GL D LI+L
Sbjct: 123 RDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRLRGI 182
Query: 125 ----TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
T C N + ++++ GYAK E+A+K F + M+ +++ ++
Sbjct: 183 FHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMEL---------DLVSWNIM 233
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTA 240
ID A+ S + A F + L +V + G+ L T+
Sbjct: 234 IDGCARNNSKEHAVRMFSQMLKGNV-----RVDGFTL---------------------TS 267
Query: 241 LDCSCDLEF-LEQGKIVHGFMIKLGLELESDL---LISLTAVCR-------------YQP 283
+ +C L+ G HG IKLGL E+ + LI++ + C +P
Sbjct: 268 IIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEP 327
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
N+ W AMISG+ +N EEA+ LF K +
Sbjct: 328 NIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIH 387
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG- 372
I KS + ++ VN LIDMY+KCGS++ A + F + DVV + M + YG HG G
Sbjct: 388 ARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGK 447
Query: 373 ----------------------------------EEGWVLFH-HIRKHGIEPRHQHYARV 397
EEG +F I H ++P+ +H+A V
Sbjct: 448 EALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACV 507
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VD+L RAG N A FI M IE + V LL A ++
Sbjct: 508 VDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGACRV 545
>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/490 (23%), Positives = 193/490 (39%), Gaps = 103/490 (21%)
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSNEENE-YGTALDCSC-DLEFLEQGKI--------V 105
+FL+++ L + S F S + + +E +G L C C FL+ + +
Sbjct: 80 LFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYM 139
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD--- 162
G K G ++ ++ + NV +ISGYA+N +E + LF + +
Sbjct: 140 KGSNFKDGRKVFDEM---------KERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGT 190
Query: 163 ---------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+ K+ + V+ LI++Y KCG+V A +
Sbjct: 191 QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI 250
Query: 196 FFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSN----EENEYGTALDCSCDLEF 249
FD+T K VV ++MI GY + + A G F + N E+ + + + +L+
Sbjct: 251 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKE 310
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQ-------------PNVTLWNAMIS 293
L + +H ++K G + ++ +L C NV W AMIS
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMIS 370
Query: 294 GYAKNGYAEEAVKLF--------------------------PKWMDYYIGKSEYRNNVIV 327
G+ +N EEAV LF P + + K+ Y + V
Sbjct: 371 GFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV 430
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
T L+D Y K G V+ A F DKD+V SAM GY G E +F + K GI
Sbjct: 431 GTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGI 490
Query: 388 EPRHQHYARVVDLLARA----GYSNHAFKFIMNMPIELRLSVRRALLS--AWKIPMQQWE 441
+P ++ ++++ A G F + ++ L V ALL+ A K ++ E
Sbjct: 491 KPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAE 550
Query: 442 NMLQTIRGID 451
+ + R D
Sbjct: 551 EVFKRQREKD 560
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 173/475 (36%), Gaps = 124/475 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG--------LFD 52
M++ +V + + V+K C L L ++H + GF LFD +
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGF----LFDQNIRTALMVAYS 341
Query: 53 RTIVFLDLYHLWSR-------TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 105
+ LD L+ W+A S G L N+ E L + + +
Sbjct: 342 KCTAMLDALRLFKEIGCVGNVVSWTAMIS--GFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
+ ++ + + + Y+ + T+ A++ Y K G EEA K+F
Sbjct: 400 YSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSG------ 453
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEWSA-- 222
ID DKD+V SAM+ GY E A
Sbjct: 454 ---------------ID-------------------DKDIVAWSAMLAGYAQTGETEAAI 479
Query: 223 --FGSF-DGLLSNEENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
FG G + E + + L+ C+ + QGK HGF IK L+S L +S +
Sbjct: 480 KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK--SRLDSSLCVSSALL 537
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321
Y + ++ WN+MISGYA++G A +A+ +F + +
Sbjct: 538 TMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM--------KK 589
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH- 380
R + I ++A C GL EEG F
Sbjct: 590 RKVKMDGVTFIGVFAACTHA----------------------------GLVEEGEKYFDI 621
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+R I P +H + +VDL +RAG A K I NMP ++ R +L+A ++
Sbjct: 622 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRV 676
>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
Length = 781
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 190/483 (39%), Gaps = 135/483 (27%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA-------------VCRYQP 132
+ + C L L++G+ HG +IKLGLE + SL A V P
Sbjct: 110 FPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMP 169
Query: 133 --NVTLRNAMISGYAKNGYAEEAVKLFPKWMDY--------------------------- 163
++ N M+ GY NG A+ F + D
Sbjct: 170 VRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGK 229
Query: 164 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
Y+ + ++ V T L+DMY KCG V A F + VV + MI GY L+E
Sbjct: 230 EIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNE 289
Query: 220 W--SAFGSFDGLLSNE-ENEYGTALD--CSC-DLEFLEQGKIVHGFMIKLG----LELES 269
AF F + + + E TA++ +C E G+ VHG++++ + LE+
Sbjct: 290 RPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLET 349
Query: 270 DLLISLTAVCRYQP---------NVTL--WNAMISGYAKNGYAEEAVKLF------PKWM 312
LL V + + N TL WN MI+ Y EA+ LF P +
Sbjct: 350 ALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYP 409
Query: 313 DYY-------------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
DY+ IG N +I+N VL MYA+ G V +
Sbjct: 410 DYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVL-HMYARSGDVVASREI 468
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLG----------------------------------- 372
FD+ + KDV+ + M +GY +HG G
Sbjct: 469 FDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLV 528
Query: 373 EEGWVLFH-HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+EGW+ F+ ++++G+ P+ +HY + DLL R G +FI +MPI+ V +LL+
Sbjct: 529 DEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLT 588
Query: 432 AWK 434
A +
Sbjct: 589 ASR 591
>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 117/467 (25%), Positives = 176/467 (37%), Gaps = 134/467 (28%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAV---------------CRYQPNVTLRNAMISGYAK 146
G+ +H ++K+GL + + SL ++ C + + NAM++ YA+
Sbjct: 291 GRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAE 350
Query: 147 NGYAEEAVKLF---------PKWMD-------------YYIGKSEY--------RNNVIV 176
N Y A+ LF P Y GKS + ++ +
Sbjct: 351 NDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI 410
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHEWSAFGSFDG 228
+ L+ +Y+KCG A + F +KD+V ++I G L + D
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 470
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------ 279
L + + + + LE L G VHG MIK GL L LI L + C
Sbjct: 471 SLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMA 530
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------- 316
N+ WN+MIS Y++N E ++ LF + I
Sbjct: 531 LKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISST 590
Query: 317 -----GKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
GKS + ++ + LIDMY KCG A F + K ++ + M
Sbjct: 591 ASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMI 650
Query: 364 VGYGLHG-----------------------------------LGEEGWVLFHHIRK-HGI 387
GYG HG EEG +F +++ +GI
Sbjct: 651 YGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGI 710
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
EP +HYA +VDLL RAG A+ FI MPIE S+ LLSA +
Sbjct: 711 EPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASR 757
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 124/559 (22%), Positives = 207/559 (37%), Gaps = 153/559 (27%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIV-------FLD----L 60
T P +LKAC AL +L G +HG + LG + +D ++V FLD +
Sbjct: 62 TFPSLLKACSALTNLSYGKTIHGSVVVLG----WRYDPFIATSLVNMYVKCGFLDYAVQV 117
Query: 61 YHLWSRTE----------WSAFGSFDGLLSNEENEYGT--------------ALDCSCDL 96
+ WS+++ W++ DG + G A S +
Sbjct: 118 FDGWSQSQSGVSARDVTVWNSM--IDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVV 175
Query: 97 EFL--------EQGKIVHGFMIKLGLELESDLLISLTAV----------------CRYQP 132
+ E+GK +HGFM++ L+ +S L +L + +
Sbjct: 176 SVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKS 235
Query: 133 NVTLRNAMISGYAKNGYAEEAVKL------------------------------FPKWMD 162
NV L N MI G+ +G E ++ L F + +
Sbjct: 236 NVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIH 295
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--W 220
+ K N+ V T L+ MY+KCG V A F +DK + + +AM+ Y ++ +
Sbjct: 296 CDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGY 355
Query: 221 SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LI 273
SA F + + + C L GK VH + K ++ S + L+
Sbjct: 356 SALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALL 415
Query: 274 SLTAVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFPKWMD-------- 313
+L + C P+ L W ++ISG KNG +EA+K+F D
Sbjct: 416 TLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPD 475
Query: 314 ------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ K+ NV V + LID+Y+KCG ++A F
Sbjct: 476 SDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFT 535
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA----- 404
+++V ++M Y + L E LF+ + GI P V+ ++
Sbjct: 536 SMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLK 595
Query: 405 GYSNHAFKFIMNMPIELRL 423
G S H + + +P + L
Sbjct: 596 GKSLHGYTLRLGIPSDTHL 614
>gi|218190710|gb|EEC73137.1| hypothetical protein OsI_07160 [Oryza sativa Indica Group]
Length = 603
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 168/423 (39%), Gaps = 120/423 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------- 169
+P + N M++ Y ++ EE+V +F + SE
Sbjct: 115 RPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGCVDSVSASNPGM 174
Query: 170 --YRNNV---------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
Y +V ++N+VL M + +D A + FD +K VV +A+ GY L
Sbjct: 175 CVYGFSVKSGLDAGLPVLNSVLT-MLVRGSHLDAARLLFDGICNKSVVTWTALASGYLLR 233
Query: 219 E-----WSAFGSFDGLLSNEENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELESDL- 271
+ F G+ N ++ L + L L K VH +IKLG E E DL
Sbjct: 234 GDYLEVFDLFNRMRGVGQNVDSVVLVNLISAAVLFGNLSVAKGVHALIIKLGFECEEDLA 293
Query: 272 --LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
LI+L A C + NV +W +MISGY + G+ EA+ +F + I
Sbjct: 294 ASLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANIE 353
Query: 318 KSEYRNNVI------------------------------VNTVLIDMYAKCGSVDLAPMF 347
+E + + V T LIDMY+K GS++LA
Sbjct: 354 PNEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLIDMYSKFGSINLARKI 413
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR------------------------ 383
F+ ++D+ + SAM GY +G G E VLF ++
Sbjct: 414 FEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFTHVLTACNYSGLV 473
Query: 384 ------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
++GIEP +H+ +VDLL +AG+ A KF MP E++ V ++S
Sbjct: 474 DEGLECFHSMTMEYGIEPSIEHHMCMVDLLCKAGHFGSALKFFKQMPSEVQNKVLAPIIS 533
Query: 432 AWK 434
++
Sbjct: 534 SYS 536
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 108/287 (37%), Gaps = 52/287 (18%)
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-----SAFGSFD- 227
V V T L+DMYAKCG + A FD +V + M+ YG + F +
Sbjct: 87 VFVRTSLLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRR 146
Query: 228 -GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS-LTAVCR----- 280
G+ +E G C + G V+GF +K GL+ +L S LT + R
Sbjct: 147 AGVRPSEGTLVGVLSGCVDSVSASNPGMCVYGFSVKSGLDAGLPVLNSVLTMLVRGSHLD 206
Query: 281 ---------YQPNVTLWNAMISGYAKNGYAEEAVKLF----------------------- 308
+V W A+ SGY G E LF
Sbjct: 207 AARLLFDGICNKSVVTWTALASGYLLRGDYLEVFDLFNRMRGVGQNVDSVVLVNLISAAV 266
Query: 309 -------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
K + I K + + LI++YAKCG ++ A FD +VV+ ++
Sbjct: 267 LFGNLSVAKGVHALIIKLGFECEEDLAASLINLYAKCGDLESAREVFDAVHMANVVVWTS 326
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSN 408
M GY G E V+F + IEP + V+ A+ G +N
Sbjct: 327 MISGYVEGGHLNEALVMFDSMVCANIEPNEATLSSVLSACAKLGSAN 373
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 149/625 (23%), Positives = 239/625 (38%), Gaps = 194/625 (31%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHG-----QIFS--------------LGFL--VCYL 46
P+ T P V+KACV + + +G VHG ++ S GF+ +
Sbjct: 194 PDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKV 253
Query: 47 FDGLFDRTIVFLDLYHLWSRTEWS---------AFGSFDGLLSNEEN---EYGTALD--- 91
FD + R +V W+ ++ ++G F GLL+ +E + T +
Sbjct: 254 FDKMPQRNLVS------WNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307
Query: 92 -CSCDLEFLEQGKIVHGFMIKLGL--ELE-SDLLISLTAVCRY-----------QPNVTL 136
C+ E + G + HG +KLGL EL+ + L+ + + C Y + NV
Sbjct: 308 LCARQGE-VRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNEKNVIS 366
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWM--------------------------------DYY 164
N+MI GY+K+ A +L K Y
Sbjct: 367 WNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYA 426
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF- 223
+ +++ +V + YAKCGS+ A F K V +A+I G H + F
Sbjct: 427 LRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGG---HVQNGFP 483
Query: 224 -GSFDGLL----SNEENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
+ D L S E + T L L+ L GK +HG M++ G EL+ + ISL
Sbjct: 484 RKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISL 543
Query: 276 TAV---C------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK------WMDY 314
++ C + N+ WN MI+G+++N + +A+ +F + W D
Sbjct: 544 VSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDE 603
Query: 315 ------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+ KS + V LIDMYAKCG ++ + FDR
Sbjct: 604 ISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDR 663
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-------------------------- 384
K V + + GYG+HG G + LF ++
Sbjct: 664 VHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEG 723
Query: 385 ----------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
GI+P+ +HYA VVD+L RAG N A + + +P + + +LLS+ +
Sbjct: 724 LEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCR 783
Query: 435 IPMQQWENMLQTIRGIDEGEKTDKR 459
R +D GEK +
Sbjct: 784 -----------NYRDLDIGEKVANK 797
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 116/269 (43%), Gaps = 59/269 (21%)
Query: 154 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+++ K ++ ++N+V++ T L+ MY+ C S + + F+ + K++ + +A++
Sbjct: 109 IEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLS 168
Query: 214 GY---GLHEWSAFGSFDGLLSNEENEYGTALDC---SC-DLEFLEQGKIVHGFMIKLGLE 266
GY L + F + + E L C +C + + G+ VHGF +K +
Sbjct: 169 GYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALK--TK 226
Query: 267 LESDLLISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+ SD+ + + Y Q N+ WN+++ +NG EE+ LF
Sbjct: 227 VLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFK 286
Query: 310 KWMDYYIG-----------------KSEYRNNVI---------------VNTVLIDMYAK 337
++ G + E R ++ VN+ L+DMY+K
Sbjct: 287 GLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSK 346
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
CG + A + FD T +K+V+ ++M GY
Sbjct: 347 CGYLCEARVLFD-TNEKNVISWNSMIGGY 374
>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 139/611 (22%), Positives = 234/611 (38%), Gaps = 178/611 (29%)
Query: 14 PLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLYHLWSRTEW 69
P VL+AC + +G +VHG+I GF + GL+ D ++
Sbjct: 103 PSVLRACAGFGDMFIGAKVHGRIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPV 162
Query: 70 SAFGSFDGLLSN--EENEYGTALD-----------------------CSCDLEFLEQGKI 104
S+ ++S+ ++ E AL+ CS L L+ K
Sbjct: 163 RDLVSWSSIISSYVDKGEANEALEMFRLLVNERVKLDWVIMLSVTEACS-KLGILKLAKS 221
Query: 105 VHGFMIKLGL---ELESDLLISLTAVC-------RYQPNVTLRN-----AMISGYAKNGY 149
+HG++++ + E + LI + + C R N+ + +MI Y ++G+
Sbjct: 222 IHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGW 281
Query: 150 AEEAVKLFPKWMD-------------------------------YYIGKSEYRNNVIVNT 178
+EA ++F K ++ Y + K + +
Sbjct: 282 FKEAFEIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGP 341
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSFDGLLSNEEN 235
VLI++YA CG + +++VV + ++ GL E + +L +
Sbjct: 342 VLIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQGLFEEAL------VLFVQMQ 395
Query: 236 EYGTALD--------CSC-DLEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVCRY--- 281
+ G LD +C ++ L+ G+ +HG+ IK + E + LI + + C +
Sbjct: 396 KRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIKRCILGEFVKNALIGMYSRCGFSDS 455
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
Q + WN++ISG+ ++G + EA+ L
Sbjct: 456 AYMIFNDIKQKSSVAWNSIISGFVQSGNSIEAIHLVDQMYLNCLKITDVVFLSAIQACAD 515
Query: 310 -------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
KW+ + + ++ + T L DMYAKCG + A F +K VV SAM
Sbjct: 516 MVCLEKGKWLHHKLIMYGVEKDLYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAM 575
Query: 363 TVGYGLHG--------------LG---------------------EEGWVLFHHIRKHGI 387
GYG+HG LG E+G F +R G+
Sbjct: 576 ISGYGMHGRIDAAITFFNQMVELGIKPNHITFMNILSACSHSGSVEQGKFYFDLMRDFGV 635
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQ-----QWEN 442
EP +H+A +VDLL+RAG N A+K I +MP SV LL+ +I + + E
Sbjct: 636 EPSSEHFACLVDLLSRAGDVNGAYKIINSMPFPADASVLGNLLNGCRIHQRMDMIPEIEK 695
Query: 443 MLQTIRGIDEG 453
L IR D G
Sbjct: 696 DLLKIRTSDTG 706
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 108/280 (38%), Gaps = 57/280 (20%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-- 221
++ + N +T LI+ YA+ GS+ + + F+ + D M +I H WS
Sbjct: 23 HLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPDSFMWGVLI---KCHVWSHA 79
Query: 222 ---AFGSFDGLLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESD 270
A +D +L NE + + L + G VHG +IK G + +E+
Sbjct: 80 FEEAILLYDKMLCNEAQITSFVFPSVLRACAGFGDMFIGAKVHGRIIKCGFDNDPFIETS 139
Query: 271 LLI------SLTAVCRYQPNVTL-----WNAMISGYAKNGYAEEAVKLF----------- 308
LL LT + ++ + W+++IS Y G A EA+++F
Sbjct: 140 LLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANEALEMFRLLVNERVKLD 199
Query: 309 -------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
K + YI + ++ LI+MY+ C + A F
Sbjct: 200 WVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFV 259
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+K + ++M Y G +E + +F + + +EP
Sbjct: 260 NMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEP 299
>gi|115446089|ref|NP_001046824.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|47497329|dbj|BAD19370.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113536355|dbj|BAF08738.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|125582005|gb|EAZ22936.1| hypothetical protein OsJ_06625 [Oryza sativa Japonica Group]
Length = 603
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 168/423 (39%), Gaps = 120/423 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------- 169
+P + N M++ Y ++ EE+V +F + SE
Sbjct: 115 RPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGCVDSVSASNPGM 174
Query: 170 --YRNNV---------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
Y +V ++N+VL M + +D A + FD +K VV +A+ GY L
Sbjct: 175 CVYGFSVKSGLDAGLPVLNSVLT-MLVRGSHLDAARLLFDGICNKSVVTWTALASGYLLR 233
Query: 219 E-----WSAFGSFDGLLSNEENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELESDL- 271
+ F G+ N ++ L + L L K VH +IKLG E E DL
Sbjct: 234 GDYLEVFDLFNRMRGVGKNVDSVVLVNLISAAVLFGNLSVAKGVHALIIKLGFECEEDLA 293
Query: 272 --LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
LI+L A C + NV +W +MISGY + G+ EA+ +F + I
Sbjct: 294 ASLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANIE 353
Query: 318 KSEYRNNVI------------------------------VNTVLIDMYAKCGSVDLAPMF 347
+E + + V T LIDMY+K GS++LA
Sbjct: 354 PNEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLIDMYSKFGSINLARKI 413
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR------------------------ 383
F+ ++D+ + SAM GY +G G E VLF ++
Sbjct: 414 FEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFTHVLTACNYSGLV 473
Query: 384 ------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
++GIEP +H+ +VDLL +AG+ A KF MP E++ V ++S
Sbjct: 474 DEGLECFHSMTMEYGIEPSIEHHMCMVDLLCKAGHFGSALKFFKQMPSEVQNKVLAPIIS 533
Query: 432 AWK 434
++
Sbjct: 534 SYS 536
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 113/290 (38%), Gaps = 58/290 (20%)
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-----SAFGSFD- 227
V V T L+DMYAKCG + A FD +V + M+ YG + F +
Sbjct: 87 VFVRTSLLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRR 146
Query: 228 -GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS-LTAVCR----- 280
G+ +E G C + G V+GF +K GL+ +L S LT + R
Sbjct: 147 AGVRPSEGTLVGVLSGCVDSVSASNPGMCVYGFSVKSGLDAGLPVLNSVLTMLVRGSHLD 206
Query: 281 ---------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV- 330
+V W A+ SGY G E LF + +GK+ + V+VN +
Sbjct: 207 AARLLFDGICNKSVVTWTALASGYLLRGDYLEVFDLFNRMRG--VGKN-VDSVVLVNLIS 263
Query: 331 --------------------------------LIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
LI++YAKCG ++ A FD +VV+
Sbjct: 264 AAVLFGNLSVAKGVHALIIKLGFECEEDLAASLINLYAKCGDLESAREVFDAVHMANVVV 323
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSN 408
++M GY G E V+F + IEP + V+ A+ G +N
Sbjct: 324 WTSMISGYVEGGHLNEALVMFDSMVCANIEPNEATLSSVLSACAKLGSAN 373
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 174/434 (40%), Gaps = 117/434 (26%)
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLR 137
S L ++ GK VHGF+++ G + + + LI+ + C + +V
Sbjct: 136 SFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSW 195
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDY-------------------------------YIG 166
N+MISGY++ G E+ L+ + +D+ +I
Sbjct: 196 NSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIV 255
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-------- 218
++ ++ V LI +YAKCGS+D A FD +KD V A+I G LH
Sbjct: 256 DNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLE 315
Query: 219 -----------EWSAFGSFDGLLSNEENE--------------------YGTALDCSCDL 247
W+A GL+ N +E + L
Sbjct: 316 LFRGMKTQILSTWNAV--ITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYF 373
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307
L+ GK +H + IK+G Y N+ + A+I YAK+GY A ++
Sbjct: 374 SSLKGGKEIHSYAIKIG----------------YHRNIYVATAIIDMYAKSGYLRGAQRV 417
Query: 308 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK----DVVMRSAMT 363
F + D ++++ T +I YA G +LA F L + D V +A+
Sbjct: 418 FDQSKD---------RSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVL 468
Query: 364 VGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
G+ ++ W +F + +K+GI+P +HYA VV L +A + A +F+ MPIE
Sbjct: 469 AACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPS 528
Query: 423 LSVRRALLSAWKIP 436
V ALL I
Sbjct: 529 AKVWGALLHGASIS 542
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 55/258 (21%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239
L+ +Y+K + A FD+ K+ +AM++ Y LH + D S +
Sbjct: 65 LVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHG-DALDLFSSLASSNLVN 123
Query: 240 ALDCSCDLEFLEQ--------GKIVHGFMIKLGLELE---SDLLISLTAVC--------- 279
+ +C L+ L GK VHGF+++ G + + + LI+ + C
Sbjct: 124 NISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKV 183
Query: 280 ---RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------------------- 314
+ +V WN+MISGY++ G E+ L+ + +D+
Sbjct: 184 FDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQD 243
Query: 315 ---------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+I ++ ++ V LI +YAKCGS+D A FD +KD V A+ G
Sbjct: 244 LAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISG 303
Query: 366 YGLHGLGEEGWVLFHHIR 383
LHG ++ LF ++
Sbjct: 304 LMLHGYVDQSLELFRGMK 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 25/225 (11%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQI----FSLGFLVCYLFDGLFDRTIVF---LDL 60
PNG T VL+AC L G VH I + VC GL+ + +L
Sbjct: 226 PNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYAREL 285
Query: 61 YHLWSRTEWSAFGS-FDGLLSNEENEYGTALDCSCDLEFLEQ-GKIVHGFMIKLGLELES 118
+ S + +G+ GL+ + + L + L ++ G + E
Sbjct: 286 FDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVL 345
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYA-----KNGYAEEAVKLFPKWMDYYIGKSEYRNN 173
DL+ + A+ ++PN ++++S A K G K + Y K Y N
Sbjct: 346 DLVREMQALG-FRPNAVTLSSVLSTIAYFSSLKGG----------KEIHSYAIKIGYHRN 394
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ V T +IDMYAK G + A FD++ D+ +V+ +A+I Y +H
Sbjct: 395 IYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVH 439
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 123/522 (23%), Positives = 205/522 (39%), Gaps = 124/522 (23%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
+ P+ ++AC+ + S+++G VH Q+ + GF RT V L +++
Sbjct: 160 IVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGF---------SSRTFVNTSLLGMYA 210
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG---KIVHGFMIKLGLELESDLLI 122
+ G + ++ EN + + F+ G + + F+ LG E+
Sbjct: 211 KL--GRIGDSCKVFNSLENRNQVSWNAMIS-GFVSNGLYAEAYNSFLRMLGEEI------ 261
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
+PNV ++ + G E+ + + + IG ++N+ V T LID
Sbjct: 262 --------RPNVACFISVSKAIGQLGDVEKG--RYINRIAFEIG---MQSNIHVGTALID 308
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMR--SAMIVGYGL--HEWSAFGSFDGLLSNEENE-- 236
M+AKCG V + F V +AMI G+ + H A F + N
Sbjct: 309 MFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDV 368
Query: 237 --YGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVCRY---------- 281
Y + L+ D+ LE K +HG + K +G+ L + L+ A C
Sbjct: 369 YTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSL-CNALMDAYAKCGELDAMRKLFDT 427
Query: 282 --QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------------------- 314
+ N W +++ Y+++ E+A+ +F + +
Sbjct: 428 WEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYG 487
Query: 315 -----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
K+ + + V +VLIDMYAKCGSV A F+ D DV+ +AM GY H
Sbjct: 488 QQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQH 547
Query: 370 GLGEEGWVLFHHIR------------------------------------KHGIEPRHQH 393
G+ ++ LF + ++G+ P +H
Sbjct: 548 GMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEH 607
Query: 394 YARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
YA VVD+L R G A+KFIM MPIE V LL A ++
Sbjct: 608 YACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRV 649
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 113/283 (39%), Gaps = 54/283 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG--SFDGLL 230
V++N ++I Y+KC A FD K V + ++VG + + G F +L
Sbjct: 98 TVMLNQLVI-AYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEIL 156
Query: 231 SNE--ENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-------- 278
+ +EY A+ ++ + G++VH +I G + + SL +
Sbjct: 157 GCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIG 216
Query: 279 --CRY-----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------- 312
C+ N WNAMISG+ NG EA F + +
Sbjct: 217 DSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIG 276
Query: 313 -------DYYIGKSEY----RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR-- 359
YI + + ++N+ V T LIDM+AKCG V + F V
Sbjct: 277 QLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPW 336
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+AM G+ + G GEE +LF + ++ I+ Y ++ +A
Sbjct: 337 NAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIA 379
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 143/356 (40%), Gaps = 87/356 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA---- 222
K+ Y ++ V L+D+Y K G + F+ DV+ S MI Y S
Sbjct: 170 KTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVE 229
Query: 223 -FGSFD-GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTA 277
FG + + + + L +E L+ GK VH ++K+GL+ S+ L+ + A
Sbjct: 230 LFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYA 289
Query: 278 VCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE----- 320
C N WN MI GY ++G ++A+ L+ ++ + SE
Sbjct: 290 KCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSS 349
Query: 321 -------------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
Y +V+V LIDMYAKCGS+ A + FD ++D
Sbjct: 350 VLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERD 409
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHH---------------------------------- 381
+ +AM GY +HGL E F
Sbjct: 410 EISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFK 469
Query: 382 --IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++ +GIEP +HY +V LL R+G+ + A K I +P+E + V RALL A I
Sbjct: 470 SMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVI 525
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 121/291 (41%), Gaps = 55/291 (18%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE----- 219
I K + +N V T LID YA CGSV+ A FD KD+V + M+ Y ++
Sbjct: 67 IYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDS 126
Query: 220 WSAFGSFDGLLSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F + N + + L LE GK VHG ++K E+ DL + + +
Sbjct: 127 LQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEM--DLYVGVGLL 184
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321
Y + +V W+ MIS YA++ + EAV+LF + ++ +++
Sbjct: 185 DLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQF 244
Query: 322 R------------------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
NV V+ L+D+YAKCG +D + F
Sbjct: 245 TFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMEL 304
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+++ V + M VGY G G++ L+ ++ + ++ Y+ V+ A
Sbjct: 305 PNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACA 355
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 50/241 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GL 50
M+ A+V PN T VL++C ++ +L +G +VH + +G F+ L D G
Sbjct: 234 MRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGR 293
Query: 51 FDRTI-VFLDLYHLWSRTEWSAF-------GSFDGLLSNEEN-----------EYGTALD 91
D ++ +F++L + + W+ G D LS +N Y + L
Sbjct: 294 LDNSMKLFMELPNR-NEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLR 352
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR----------- 137
L +E G +H +K + + + LI + A C N L
Sbjct: 353 ACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEIS 412
Query: 138 -NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
NAMISGY+ +G EA+K F + ++E N + ++ + G +D+ +
Sbjct: 413 WNAMISGYSMHGLVGEALKAFQ-----MMQETECVPNKLTFVSILSACSNAGLLDIGQNY 467
Query: 197 F 197
F
Sbjct: 468 F 468
>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
Length = 1134
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 143/353 (40%), Gaps = 91/353 (25%)
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEWSAFGSF-D 227
V V L+DMY+KCG ++ A F + + ++ +AMI GY G + FG +
Sbjct: 505 VEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQE 564
Query: 228 GLLSNEENEYG-TALDCSCDLE-FLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---- 281
+ +E+ T+L +C + GK +HGF+++ G S I+ + V Y
Sbjct: 565 AKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCG 624
Query: 282 -------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------------- 309
+ + W+++I GYA+ G EA+ LF
Sbjct: 625 NLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIG 684
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K M + K V+ L+DMY KCG VD A F KDV+
Sbjct: 685 VFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVIS 744
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKH--------------------------------- 385
+ M GYG HGLG++ +F+ + +H
Sbjct: 745 WTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLL 804
Query: 386 ---GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GI+PR +HYA VVDLL RAG A + MPI+ + + + LLS ++
Sbjct: 805 ETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRV 857
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 115/272 (42%), Gaps = 65/272 (23%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS- 231
N+I + LIDMY KC +A FD +++VV +A++ G+ L+ G +G LS
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLN-----GDLNGSLSL 457
Query: 232 ----------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAV 278
E + T L L LE+G +HGF +K+G E+ ++ L+ + +
Sbjct: 458 FTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSK 517
Query: 279 C----------RYQPNVTL--WNAMISGYAKNGYAEEAVKLFPKWMD------------- 313
C R+ +L WNAMI+GY GY A+ F +
Sbjct: 518 CGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLT 577
Query: 314 -----------YYIGKSEY----------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
Y GK + ++ + L+D+Y KCG++ A FD+
Sbjct: 578 SLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK 637
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+K ++ S++ +GY G E LF +++
Sbjct: 638 EKTMISWSSLILGYAQEGDFVEAMGLFKRLQE 669
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
N+I + LIDMY KC +A FD +++VV +A+ G+ L+G LF +
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462
Query: 384 KHGIEP 389
+ GI P
Sbjct: 463 RQGIYP 468
>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
Length = 667
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 164/414 (39%), Gaps = 120/414 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKSEYR---- 171
NA+I+G KNGYAE A+++F + D G++ +R
Sbjct: 178 NAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVED 237
Query: 172 ----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DKDVVMRSAMIVGYGLHEWSAFGSF 226
+ V V LIDMY KC S++ A FD DKDVV +AMI Y L++ AF +
Sbjct: 238 KGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLND-RAFEAI 296
Query: 227 D----GLLSNEENEYGTA----LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL 275
L+S G L + + K H I+LGL+ + LI
Sbjct: 297 SLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDA 356
Query: 276 TAVC-----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------ 312
A C R WNA +SGY +G ++A++LF + +
Sbjct: 357 YARCGKMKLMRLTLERGSWRAETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMA 416
Query: 313 ----------DYYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
D GK+ + + + T LID+Y+K G +D A F +K
Sbjct: 417 SILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEK 476
Query: 355 DVVMRSAMTVGYGLHG-----------------------------------LGEEGWVLF 379
DVV + + GY +HG + +EG +F
Sbjct: 477 DVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVF 536
Query: 380 HHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+R HG+ P +HY+ +VD+L RAG A + I +MP E SV ALL A
Sbjct: 537 KDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALLGA 590
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 106/290 (36%), Gaps = 56/290 (19%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV-----GYGLHEWSAFG 224
+ + V LI MY CG V A F ++ VV +A+I GY FG
Sbjct: 139 FGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFG 198
Query: 225 SF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC 279
DG+ + C+ + L G+ VH + GL + LI + C
Sbjct: 199 EMAADGVGIDRATVVSVLPACA-QAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKC 257
Query: 280 R-------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPK-------W-----MDY 314
R + +V W AMI Y N A EA+ L + W M Y
Sbjct: 258 RSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVY 317
Query: 315 YI--------GKSE-----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ GK ++++ V T LID YA+CG + L + +R +
Sbjct: 318 LLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRA 377
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+A++ GY + G ++ LF + + P A ++ A +
Sbjct: 378 ETWNAALS-GYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESA 426
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 142/354 (40%), Gaps = 117/354 (33%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
N+V+V T LIDMYAKCG V+ A + FD+ +++V + MI GY
Sbjct: 128 NDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGY---------------- 171
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
+ GK + GL ++ N W A+
Sbjct: 172 ------------------MRNGKFEDALQVFDGLPVK---------------NAISWTAL 198
Query: 292 ISGYAKNGYAEEAVKLFPK------------------------------WMDYYIGKSEY 321
I G+ K Y EEA++ F + W+ + ++
Sbjct: 199 IGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDF 258
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
RNNV V+ LIDMY++CG +DLA FDR + +V +++ VG+ ++GL +E F+
Sbjct: 259 RNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNS 318
Query: 382 IRKHG------------------------------------IEPRHQHYARVVDLLARAG 405
+++ G I PR +HY +VDL +RAG
Sbjct: 319 MQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAG 378
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKIP--MQQWENMLQTIRGIDEGEKTD 457
A + NMP++ + +LL+A + + EN++ + +D G ++
Sbjct: 379 RLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSN 432
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 139/348 (39%), Gaps = 82/348 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPS---LLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVF 57
M+ A + PN T +L AC PS + G +H + LG + + G
Sbjct: 82 MREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVG-----TAL 136
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 117
+D+Y R E SA +FD + + T +D ++ GK + GL ++
Sbjct: 137 IDMYAKCGRVE-SARLAFDQMGVRNLVSWNTMID-----GYMRNGKFEDALQVFDGLPVK 190
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK------------------ 159
+ IS TA +I G+ K Y EEA++ F +
Sbjct: 191 N--AISWTA-------------LIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235
Query: 160 ------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207
W+ + ++RNNV V+ LIDMY++CG +DLA FDR + +V
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVS 295
Query: 208 RSAMIVGYGLH-----EWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
+++IVG+ ++ S F S +G + + G + CS H +
Sbjct: 296 WNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACS------------HAGL 343
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
I GL + + V R P + + ++ Y++ G EEA+ +
Sbjct: 344 IGEGLR----IFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVL 387
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 136/333 (40%), Gaps = 89/333 (26%)
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----LHEWSAFGSF--DGLLSNEENEYGTA 240
S+ A F+ + D+V+ ++M GY L +S F DG+L + + +
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYT-FPSL 135
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNV 285
L + LE+G+ +H +KLGL+ LI++ C +P V
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCV 195
Query: 286 TLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 315
+NAMI+GYA+ EA+ LF KW+ Y
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
K + V VNT LIDM+AKCGS+D A F++ KD SAM V Y HG E+
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKS 315
Query: 376 WVLFHHIR------------------------------------KHGIEPRHQHYARVVD 399
++F +R K GI P +HY +VD
Sbjct: 316 MLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVD 375
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
LL+RAG A++FI +PI + R LL+A
Sbjct: 376 LLSRAGNLEDAYEFIDKLPISPTPMLWRILLAA 408
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 70/165 (42%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISG 143
LE+G+ +H +KLGL+ LI++ C +P V NAMI+G
Sbjct: 145 LEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITG 204
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
YA+ EA+ LF KW+ Y K +
Sbjct: 205 YARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY 264
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V VNT LIDM+AKCGS+D A F++ KD SAMIV Y H
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/418 (23%), Positives = 171/418 (40%), Gaps = 100/418 (23%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
LE G+ +HG ++K GL+ L+ + +C + +V N +IS
Sbjct: 155 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 214
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
Y K G EE+ +LF K + Y+ + +N
Sbjct: 215 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 274
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
+++ +IDMYA CG +D A F ++D++ + ++ G+ + G D +
Sbjct: 275 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGF-----TNLGEIDVARN-- 327
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
D + +++ ++ G++ + +L ++ A +P+ ++++
Sbjct: 328 ------YFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT-NVKPDEFTMVSVLT 380
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
A G E +W+ YI +++ +N++ V LIDMY KCG VD A F
Sbjct: 381 ACAHLGALE-----LGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 435
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK----------------------------- 384
+D +AM VG ++G GE+ +F ++ K
Sbjct: 436 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 495
Query: 385 -------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HGIEP HY +VDLLARAG A++ I NMPI+ V ALL+ ++
Sbjct: 496 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRV 553
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 121/300 (40%), Gaps = 71/300 (23%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FP---------------KW 160
+PN+ + N MI GY++ + + V L FP +
Sbjct: 101 EPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQ 160
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ ++ K + NV V+T L+ MY CG +D A FD DV+ + +I Y
Sbjct: 161 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAY----- 215
Query: 221 SAFGSFDG-----LLSNEENEYGTA------LDCSCDLEFLEQGKIVHGFMIKLGLELES 269
+ G F+ L+ ++ T L L+ L GK VH ++
Sbjct: 216 NKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN------- 268
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
C+ + N+ L NAMI YA G + A+ +F +S ++I T
Sbjct: 269 ---------CKVESNLVLENAMIDMYADCGEMDSALGIF---------RSMNNRDIISWT 310
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
++ + G +D+A +FD+ +KD V +AM GY +E LF +++ ++P
Sbjct: 311 TIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKP 370
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 37/187 (19%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKL---------------FP---------------KW 311
+PN+ +WN MI GY++ + + V L FP +
Sbjct: 101 EPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQ 160
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ ++ K + NV V+T L+ MY CG +D A FD DV+ + + Y G
Sbjct: 161 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 220
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVR 426
EE LF + + P V+ + R G H+ ++ N +E L +
Sbjct: 221 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS--YVKNCKVESNLVLE 278
Query: 427 RALLSAW 433
A++ +
Sbjct: 279 NAMIDMY 285
>gi|147817099|emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
Length = 2076
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 141/350 (40%), Gaps = 93/350 (26%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-----DG 228
V T LID+Y++ G ++ A + F D D+ +AM+ GY + A G F G
Sbjct: 402 VATALIDVYSRSGKMEEAELLFQNKDDLDLACWNAMMFGYIISNDGNKALGLFSLINRSG 461
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------- 281
S++ A C C L L+ZGK +H +IK G SDL ++ + Y
Sbjct: 462 EKSDQITLATAAKACGC-LVLLDZGKQIHAHVIKAG--FXSDLYVNSGILDMYIKCGDMV 518
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY---------- 321
P+ W +MISG NG ++A++++ + + EY
Sbjct: 519 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHQMRQSGVMPDEYTFATLIKASS 578
Query: 322 -----------RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
NVI V T L+DMYAKCG+++ F + +++V+ +A
Sbjct: 579 YVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDXYRLFKKMNVRNIVLWNA 638
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------------ 391
M VG HG EE LF ++ HGIEP
Sbjct: 639 MLVGIAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSLAGLTSEAYEYFHSMPNDC 698
Query: 392 ------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY+ +VD L AG K I MP + S+ RALL A +I
Sbjct: 699 GIEPEIEHYSCLVDALGXAGLVQEXDKVIETMPFKASASMNRALLGACRI 748
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 49/212 (23%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239
L+ +Y+KCGS+ A FD T ++D+V +A++ Y S+ S DG
Sbjct: 125 LLTLYSKCGSLSFACQVFDTTPERDLVTWNAILGAYA----SSVDSNDG----------- 169
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAM-ISGYAK 297
++G +H F + L L S ++L V + N LW A + GYA
Sbjct: 170 ---------NAQEG--LHLFRL-LRESLGSTTRMTLAPVLKLCSNSXCLWAAKGVHGYA- 216
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+K+ W +V V L+++Y+KCG + A + FD ++DVV
Sbjct: 217 -------IKIGLVW------------DVFVFGTLMNIYSKCGRMXDARLLFDGMRERDVV 257
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ + M GY GL +E + LF + G+ P
Sbjct: 258 LWNMMLKGYVQLGLEKEAFQLFSEFHRSGLXP 289
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 50/178 (28%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY----------------- 130
A C C L L+ZGK +H +IK G SDL ++ + Y
Sbjct: 472 AAKACGC-LVLLDZGKQIHAHVIKAGFX--SDLYVNSGILDMYIKCGDMVNAGIVFNYIS 528
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
P+ +MISG NG ++A++++ + + EY
Sbjct: 529 APDDVAWTSMISGCVDNGNEDQALRIYHQMRQSGVMPDEYTFATLIKASSYVTALEQGRQ 588
Query: 171 -RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
NVI V T L+DMYAKCG+++ F + +++V+ +AM+VG H
Sbjct: 589 LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDXYRLFKKMNVRNIVLWNAMLVGIAQH 646
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 47/185 (25%)
Query: 18 KACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLDL------YHLWSRTEWS 70
KAC L L G ++H + GF Y+ G+ D I D+ ++ S +
Sbjct: 474 KACGCLVLLDZGKQIHAHVIKAGFXSDLYVNSGILDMYIKCGDMVNAGIVFNYISAPDDV 533
Query: 71 AFGS-FDGLLSN--------------------EENEYGTALDCSCDLEFLEQGKIVHGFM 109
A+ S G + N +E + T + S + LEQG+ +H +
Sbjct: 534 AWTSMISGCVDNGNEDQALRIYHQMRQSGVMPDEYTFATLIKASSYVTALEQGRQLHANV 593
Query: 110 IKLGLELESDLLISLTAVCRYQP-----------------NVTLRNAMISGYAKNGYAEE 152
IKL + SD + + V Y N+ L NAM+ G A++G AEE
Sbjct: 594 IKL--DCVSDPFVGTSLVDMYAKCGNIEDXYRLFKKMNVRNIVLWNAMLVGIAQHGNAEE 651
Query: 153 AVKLF 157
AV LF
Sbjct: 652 AVNLF 656
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/456 (25%), Positives = 180/456 (39%), Gaps = 147/456 (32%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
GK VH F++KLGL C V + N++++ YAK G + A +F +
Sbjct: 126 GKKVHSFVVKLGLH-----------AC-----VPVANSLLNMYAKTGDLKMAKVVFDRM- 168
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
+ RN N +I ++ CG VDLA F+ ++D+V ++MI G H +
Sbjct: 169 -------KLRNTSSWNA-MISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFD 220
Query: 222 A-----FGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL----------- 263
F S D L + +AL +LE L GK +HG++++
Sbjct: 221 NEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNA 280
Query: 264 ---------GLELE---------SDL-LISLTAVCR------------------YQPNVT 286
G+E+ SDL +I+ TA+ P+V
Sbjct: 281 LISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVV 340
Query: 287 LWNAMISGYAKNGYAEEAVKLF-------PKWMDYYI---------------GKSEYRNN 324
W AMI GY +NG +A+++F P+ + + GK + +
Sbjct: 341 AWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASA 400
Query: 325 V--------IVNTVLIDMYAKCGSVDLAPMFFDR-TLDKDVVMRSAMTVGYGLHGLGEEG 375
+ V L MYAK GS++ A F+ ++D V ++M + HGLGEE
Sbjct: 401 IRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEA 460
Query: 376 WVLFHHIRKHGIEPRH------------------------------------QHYARVVD 399
LF + GI+P H HYA +VD
Sbjct: 461 IELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVD 520
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L RAG A+KF+ NMP+E + +LLS+ K+
Sbjct: 521 LFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKV 556
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 119/526 (22%), Positives = 206/526 (39%), Gaps = 123/526 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG----LFDRTIV 56
M+++ P+ T +L AC ++ L G ++H + G Y+ +G L+ + V
Sbjct: 235 MRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGV 294
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
++ ++ + + ++ +L YG D + + Q M+ G+
Sbjct: 295 IVEALEIFKSGDRTNVVLWNLMLV----AYGQISDLAKSFDLFCQ-------MVAAGVRP 343
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
L C Y + L E + L K+ + +++ V
Sbjct: 344 NEFTYPCLLRTCTYAGEINL--------------GEQIHLLSI-------KTGFESDMYV 382
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL----L 230
+ VLIDMY+K G +D A + KDVV ++MI GY HE+ A +F + +
Sbjct: 383 SGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGI 442
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-RYQPNVT 286
+ +A+ ++ + QG+ +H + G + + L++L A C R + +
Sbjct: 443 WPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFS 502
Query: 287 L-----------WNAMISGYAKNGYAEEAVKLF--------------------------- 308
L WN M+SG+A++G EEA+++F
Sbjct: 503 LFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLAD 562
Query: 309 ---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
K + + K+ + V LI +Y KCGS++ A M F +++ V + +
Sbjct: 563 IKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITS 622
Query: 366 YGLHGLGEEGWVLFHHIRK------------------------------------HGIEP 389
HG G E LF +++ HGI P
Sbjct: 623 CSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHP 682
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R HYA VVD+L RAG + A KF+ MP+ V R LLSA ++
Sbjct: 683 RPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRV 728
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 113/287 (39%), Gaps = 55/287 (19%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLS 231
I +LID+YAK G V A F++ +D V AM+ GY GL E A G + +
Sbjct: 78 IAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGE-EAVGLYHQMHC 136
Query: 232 N----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLI-------SLTA 277
+ + L EQG++VH + K G E+ + LI SL+
Sbjct: 137 SGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSL 196
Query: 278 VCR------YQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
R Y VT +N +IS +A+ G E A+++F
Sbjct: 197 AERVFSEMPYCDRVT-FNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACA 255
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
K + Y+ K+ + I+ L+D+Y KCG + A F +VV+ +
Sbjct: 256 SIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNL 315
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSN 408
M V YG + + LF + G+ P Y ++ AG N
Sbjct: 316 MLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEIN 362
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 152/385 (39%), Gaps = 109/385 (28%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G +VHG ++ GL+ +DL RNA+IS Y + G K+F
Sbjct: 135 GLVVHGEAVRTGLD--ADLFT--------------RNALISFYCRIGDCRSGRKVF---- 174
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
D+ + R+ V N+ ++ Y CG VDLA FD +D + MI GYG
Sbjct: 175 DHGV-----RDLVSWNS-MVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG----E 224
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G D + E + D C ++ G HG M + + E
Sbjct: 225 MAGGVD--RARELFDQMPDRDLVCWNSMID-GYARHGRMDEARVLFEE----------MP 271
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------------------W 311
+ NV W+ +I GY + G EA++ F + W
Sbjct: 272 ERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRW 331
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ Y+ K + +V+V T LIDMY KCG +DLA + F+ K VV + M VG G HG
Sbjct: 332 LHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGY 391
Query: 372 G-----------------------------------EEGWVLFHHIRKH-GIEPRHQHYA 395
G EG +F+ + K G+EP+ +HY
Sbjct: 392 GLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYG 451
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIE 420
++DLL RAG + A I MP+E
Sbjct: 452 ALIDLLGRAGRVDQARNTIETMPME 476
>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 497
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 170/379 (44%), Gaps = 68/379 (17%)
Query: 80 SNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESD--LLISLTAVCRYQPN--- 133
SN+ + +++ C + FL K F+ L E+E + LI+L + C + P+
Sbjct: 49 SNQTVSWTSSISHHCKNNNFL---KAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTS 105
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
+T A+ + K+G+A N+V+V T LIDMYAKCG +D A
Sbjct: 106 ITFGAALHTHAFKHGFA--------------------MNDVMVGTALIDMYAKCGKLDYA 145
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253
+ FD+ +++V + MI GY + G D L D +
Sbjct: 146 RLVFDQMGVRNLVSWNTMIDGYMKN-----GDVDDALK--------LFDKLPVKNVVSWT 192
Query: 254 KIVHGFMIKLGLE--LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
++ GF+ K E LE + L V P+ A+IS A G + W
Sbjct: 193 VVIGGFVKKECYEEALECFREMQLAGVV---PDFVTVIAIISACANLGALGLGL-----W 244
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ + K E+R+NV V LIDMYA+CG ++LA FD +++V +++ VG+ ++GL
Sbjct: 245 VHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGL 304
Query: 372 G---------------EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
+EG +F I R H PR +HY +VDL +RAG A+ I
Sbjct: 305 ADKALSFFPCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIK 364
Query: 416 NMPIELRLSVRRALLSAWK 434
MP+ V +LL+A +
Sbjct: 365 KMPMMPNEVVLGSLLAACR 383
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 123/495 (24%), Positives = 179/495 (36%), Gaps = 158/495 (31%)
Query: 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------- 130
+ + T L LEQ VH +I+ GL + ++ +C
Sbjct: 23 DTTSSISTLLKACTTTSTLEQ---VHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSV 79
Query: 131 -----QPNVTLRNAMISGYAKNGYAEEAVKLFP--KWMDYYIGKSEYRN----------- 172
P+ L N I GY++N V LF K D K Y +
Sbjct: 80 FNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 139
Query: 173 -----------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
+V V T LID+Y KCG + A FD +++VV +AMI GY
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 199
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMI--------KLGLEL 267
SF L+ E D + + I+ G++ K+ E+
Sbjct: 200 A--------SFSDLV-----EARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEM 246
Query: 268 ESDLLISLT------------AVCRY------QPNVTLWNAMISGYAKNGYAEEAVKLF- 308
++S T A R+ + +V W+A+ISGY +NG EAVK+F
Sbjct: 247 PHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFL 306
Query: 309 -----------------------------PKWMDYYIGKSE---YRNNVIVNTVLIDMYA 336
KW+D Y+ KS +R +VI LIDM A
Sbjct: 307 EMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA--ALIDMNA 364
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG---------- 386
KCGS+D A F+ +D++ +M G +HG G + LF + G
Sbjct: 365 KCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTV 424
Query: 387 --------------------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
I P HYA +VDLL RAG A++ + +MP+E
Sbjct: 425 ILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVE 484
Query: 421 LRLSVRRALLSAWKI 435
ALL A K+
Sbjct: 485 PHAGAWGALLGACKL 499
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 152/385 (39%), Gaps = 109/385 (28%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G +VHG ++ GL+ +DL RNA+IS Y + G K+F
Sbjct: 135 GLVVHGEAVRTGLD--ADLFT--------------RNALISFYCRIGDCRSGRKVF---- 174
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
D+ + R+ V N+ ++ Y CG VDLA FD +D + MI GYG
Sbjct: 175 DHGV-----RDLVSWNS-MVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG----E 224
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G D + E + D C ++ G HG M + + E
Sbjct: 225 MAGGVD--RARELFDQMPDRDLVCWNSMID-GYARHGRMDEARVLFEE----------MP 271
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------------------W 311
+ NV W+ +I GY + G EA++ F + W
Sbjct: 272 ERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRW 331
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ Y+ K + +V+V T LIDMY KCG +DLA + F+ K VV + M VG G HG
Sbjct: 332 LHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGY 391
Query: 372 G-----------------------------------EEGWVLFHHIRKH-GIEPRHQHYA 395
G EG +F+ + K G+EP+ +HY
Sbjct: 392 GLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYG 451
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIE 420
++DLL RAG + A I MP+E
Sbjct: 452 ALIDLLGRAGRVDQARNTIETMPME 476
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/427 (26%), Positives = 167/427 (39%), Gaps = 122/427 (28%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRN 138
L F++ G +HGF+ K GL SDL + + Y Q + N
Sbjct: 100 LGFVKGGLQIHGFLKKTGLW--SDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYN 157
Query: 139 AMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAP 194
+MI GY K G E A +LF P+ M N+I LI YA+ VD+A
Sbjct: 158 SMIDGYVKCGSIESASELFDLMPREM----------KNLISWNSLISGYAQTSEGVDIAS 207
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
F +KD++ ++MI GY H A FD + + + T +D L F+ Q
Sbjct: 208 KLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQ 267
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--- 309
K + M +V +N+M++GY +N + EA+++F
Sbjct: 268 AKTLFDQMP--------------------HRDVVAYNSMMAGYVQNRFHMEALEIFSDME 307
Query: 310 --------------------------KWMDY--YIGKSEYRNNVIVNTVLIDMYAKCGSV 341
K MD YI + ++ + LIDMY+KCGS+
Sbjct: 308 KESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSI 367
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
A + F+ +K + +AM G +HGLGE + + I
Sbjct: 368 QHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNAC 427
Query: 383 -----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
RKH IEPR QHY +VD+L+R+G A I MPIE +
Sbjct: 428 SHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVI 487
Query: 426 RRALLSA 432
R L+A
Sbjct: 488 WRTFLTA 494
>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 647
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 151/368 (41%), Gaps = 88/368 (23%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYY----IGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
N +I+GY + G+ EEA +LF D G+ +R NV+ ++ Y K G + A
Sbjct: 235 NTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSA 294
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253
FDR +++D + MI GY +SN E + + L
Sbjct: 295 RELFDRMVEQDTCSWNTMISGY------------VQISNMEEASKLFREMPIP-DVLSWN 341
Query: 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW-- 311
IV GF K L L D + N+ WN++I+GY KN + A++LF +
Sbjct: 342 LIVSGFAQKGDLNLAKDFFERMPL-----KNLISWNSIIAGYEKNEDYKGAIQLFSRMQF 396
Query: 312 --------------------MDYYIGKSEYR-------NNVIVNTVLIDMYAKCGS-VDL 343
++ Y+GK ++ + +N LI MY++CG+ VD
Sbjct: 397 EGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPINNSLITMYSRCGAIVDA 456
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------- 384
+F + L KDV+ +AM GY HGL E LF +++
Sbjct: 457 CTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNACAH 516
Query: 385 -----------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
+GIE R +H+A +VD+L R G A I MP + +V
Sbjct: 517 AGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWG 576
Query: 428 ALLSAWKI 435
ALLSA ++
Sbjct: 577 ALLSACRV 584
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 111/287 (38%), Gaps = 63/287 (21%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N +ISGYAKNG ++A+KLF + N + + LI + G VD A FF
Sbjct: 139 NTVISGYAKNGRMDQALKLF---------NAMPERNAVSSNALITGFLLNGDVDSAVDFF 189
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
+ SA+I GL+ N E + + C C
Sbjct: 190 RTMPEHYSTSLSALI--------------SGLVRNGELDMAAGILCECG----------- 224
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY-- 315
+ DL V +N +I+GY + G+ EEA +LF D
Sbjct: 225 --------NGDDDL-------------VHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGD 263
Query: 316 --IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
G+ +R NV+ ++ Y K G + A FDR +++D + M GY E
Sbjct: 264 GDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNME 323
Query: 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
E LF R+ I P + +V A+ G N A F MP++
Sbjct: 324 EASKLF---REMPI-PDVLSWNLIVSGFAQKGDLNLAKDFFERMPLK 366
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 35/149 (23%)
Query: 104 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW--- 160
IV GF K L L D + N+ N++I+GY KN + A++LF +
Sbjct: 343 IVSGFAQKGDLNLAKDFFERMPL-----KNLISWNSIIAGYEKNEDYKGAIQLFSRMQFE 397
Query: 161 -------------------MDYYIGKSEYR-------NNVIVNTVLIDMYAKCGS-VDLA 193
++ Y+GK ++ + +N LI MY++CG+ VD
Sbjct: 398 GERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPINNSLITMYSRCGAIVDAC 457
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
+F + L KDV+ +AMI GY H +A
Sbjct: 458 TVFNEIKLYKDVITWNAMIGGYASHGLAA 486
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 81/215 (37%), Gaps = 65/215 (30%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N IS ++G EA LF ++R+ V N+ +I Y + A F
Sbjct: 43 NKKISNLIRSGRLSEARALFDSM--------KHRDTVTWNS-MITGYVHRREIARARQLF 93
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D +DVV + ++ GY +S GS F+E+G+ +
Sbjct: 94 DEMPRRDVVSWNLIVSGY----FSCRGS----------------------RFVEEGRRLF 127
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
M Q + WN +ISGYAKNG ++A+KLF
Sbjct: 128 ELMP--------------------QRDCVSWNTVISGYAKNGRMDQALKLF--------- 158
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ N + + LI + G VD A FF RT+
Sbjct: 159 NAMPERNAVSSNALITGFLLNGDVDSAVDFF-RTM 192
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 145/357 (40%), Gaps = 92/357 (25%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGS 225
+ YR V + T L+ MY +CG++D A DR ++ VV + MI GY E A
Sbjct: 71 ARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDL 130
Query: 226 FDGLLSNE--ENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F +L NEY T L + + QGK VH ++K E S + + + + Y
Sbjct: 131 FIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFE--SHMFVGSSLLDMY 188
Query: 282 -----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW------------- 311
+ +V A+ISGYA+ G EEA+ LF +
Sbjct: 189 AKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFT 248
Query: 312 -----------MDY------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
+DY I + E V + LIDMY+KCG + + FD L++
Sbjct: 249 TLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER 308
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------------- 389
VV +AM +GYG HGLG E LF + K ++P
Sbjct: 309 SVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVDEGLDIF 367
Query: 390 ----RHQ-------HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ Q HY ++DLL R+G A I NMP E S+ +LL A ++
Sbjct: 368 DTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRV 424
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 48/247 (19%)
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIK--------LGLEL-----ESDLLISLTAVCRY 281
+EY A+ + L +G+ VH MI LG L L V
Sbjct: 43 HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 102
Query: 282 QP--NVTLWNAMISGYAKNGYAEEAVKLFPKWM-------DYYIG--------------- 317
P +V W MISGY++ EA+ LF K + +Y +
Sbjct: 103 MPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG 162
Query: 318 --------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
K+ + +++ V + L+DMYAK ++ A FD ++DVV +A+ GY
Sbjct: 163 KQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQK 222
Query: 370 GLGEEGWVLFHHIRKHGIEPRHQHYARVVDL---LARAGYSNHAFKFIMNMPIELRLSVR 426
GL EE LF + G++ H + +V LA Y I+ + ++++
Sbjct: 223 GLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQ 282
Query: 427 RALLSAW 433
+L+ +
Sbjct: 283 NSLIDMY 289
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 51/184 (27%)
Query: 84 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR---- 137
NEY T L + + QGK VH ++K E S + + + + Y + ++
Sbjct: 142 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFE--SHMFVGSSLLDMYAKSENIQEARR 199
Query: 138 -------------NAMISGYAKNGYAEEAVKLFPKW------------------------ 160
A+ISGYA+ G EEA+ LF +
Sbjct: 200 VFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLAS 259
Query: 161 MDY------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
+DY I + E V + LIDMY+KCG + + FD L++ VV +AM++G
Sbjct: 260 LDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMG 319
Query: 215 YGLH 218
YG H
Sbjct: 320 YGRH 323
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 152/385 (39%), Gaps = 109/385 (28%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G +VHG ++ GL+ +DL RNA+IS Y + G K+F
Sbjct: 29 GLVVHGEAVRTGLD--ADLFT--------------RNALISFYCRIGDCRSGRKVF---- 68
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
D+ + R+ V N+ ++ Y CG VDLA FD +D + MI GYG
Sbjct: 69 DHGV-----RDLVSWNS-MVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG----E 118
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G D + E + D C ++ G HG M + + E
Sbjct: 119 MAGGVD--RARELFDQMPDRDLVCWNSMID-GYARHGRMDEARVLFEE----------MP 165
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------------------W 311
+ NV W+ +I GY + G EA++ F + W
Sbjct: 166 ERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRW 225
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ Y+ K + +V+V T LIDMY KCG +DLA + F+ K VV + M VG G HG
Sbjct: 226 LHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGY 285
Query: 372 G-----------------------------------EEGWVLFHHIRKH-GIEPRHQHYA 395
G EG +F+ + K G+EP+ +HY
Sbjct: 286 GLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYG 345
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIE 420
++DLL RAG + A I MP+E
Sbjct: 346 ALIDLLGRAGRVDQARNTIETMPME 370
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
Length = 941
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 133/513 (25%), Positives = 205/513 (39%), Gaps = 116/513 (22%)
Query: 11 CTPPLVLKACVALPSLLMGPRVHGQIFS--------LGFLVCYLFD--GLFDRTIVFLDL 60
C+ +LK SL G +VH Q+ S LG L+ ++ G D
Sbjct: 422 CSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQG 481
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ------------------- 101
H + W+ S L+ N E G L S DLE E
Sbjct: 482 IHQRNVFSWTILISL--LVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLS 539
Query: 102 -GKIVHGFMIKLGLE---LESDLLISLTAVCRYQPNVTL-------RNA-----MISGYA 145
GK +H + GLE + S+ L+++ C L R+ +IS YA
Sbjct: 540 LGKTIHERIRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYA 599
Query: 146 KNGYAEEAVKLFPKWMDYY------------------------------IGKSEYRNNVI 175
GY EA++L+ + + I S +V
Sbjct: 600 HAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVF 659
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSNE 233
V T ++ Y KC +V+ A FDR LDKD+V +AMI Y + E AF + ++ N+
Sbjct: 660 VGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQ 719
Query: 234 --ENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
N+ T LD +E+G +H G Y + ++ N
Sbjct: 720 MPPNDVTLITLLDSCSSTCKMERGSSLHREAAARG----------------YLSHTSVVN 763
Query: 290 AMISGYAKN-GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
A+I+ YAK G E A F +S NV+ + ++ YA+ G D A F
Sbjct: 764 ALINMYAKCCGNLEAAQTAF---------ESVASKNVVSWSSIVAAYARNGEEDRARNLF 814
Query: 349 DRTLDKDVVMRSAMTVGYGLH-----GLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLA 402
T+++D V+ + +T LH GL +EGW F ++ H +EP +HY +V+LLA
Sbjct: 815 -WTMNQDGVLPNIVTFTSVLHACSHAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLA 873
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++G A F+ MP++ S R+LL A ++
Sbjct: 874 KSGRVKQAASFMSAMPVQPDASAWRSLLGACEV 906
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/428 (22%), Positives = 152/428 (35%), Gaps = 87/428 (20%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
+ AC AL L G ++H +I S G L ++V++ Y E A +F
Sbjct: 16 AVSACAALGDSLQGKQIHARILSSGLGASVLLSN----SLVYM--YGKCGSVE-EARNAF 68
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
D + + + + E +Q ++ + G + + SL C
Sbjct: 69 DRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNAC------- 121
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+A +K ++++G S + ++ N LI MY+ CGS+D A
Sbjct: 122 -------------FASGDLKFGRMLHEHFLGTSFVSDQIVCNG-LISMYSDCGSLDDATA 167
Query: 196 FFDRTLDKDVVMRSAMIVGYGLH--------EWSAFGSFDGLLSNEENEYGTALDCSCDL 247
F+ + DV + +I Y H WS +GL SNE + T LD L
Sbjct: 168 VFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQ-EGLRSNEIT-FLTVLDTCSSL 225
Query: 248 EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR-------------YQPNVTLWNAM 291
E LE GK VH + GL+ + LIS+ C +P+V W+A
Sbjct: 226 EVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAF 285
Query: 292 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEY 321
I+ Y G EA+K F + + + Y
Sbjct: 286 IAAY---GQHWEAIKTFELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPY 342
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
N V +YAKC V A F KD V +A+ Y GL + L
Sbjct: 343 TQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQ 402
Query: 382 IRKHGIEP 389
++ G P
Sbjct: 403 MQVEGFVP 410
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 99/420 (23%), Positives = 154/420 (36%), Gaps = 110/420 (26%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP 132
+GL SNE + T LD LE LE GK VH + GL+ + LIS+ C P
Sbjct: 206 EGLRSNEIT-FLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHP 264
Query: 133 N----VTLR---------NAMISGYAKNGYAEEAVKLFP--------------------- 158
+ V LR +A I+ Y G EA+K F
Sbjct: 265 DEAREVFLRISRPSVISWSAFIAAY---GQHWEAIKTFELMNLEGVKPNATTLTSVLRAC 321
Query: 159 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 209
+ + + Y N V +YAKC V A F KD V +
Sbjct: 322 ATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWN 381
Query: 210 AMIVGY---GLHEWSAFGS----FDGLLSNEENEYGTALDCS--------CDLEFLEQGK 254
A++ Y GL + F S +G + ++ CS + + L G+
Sbjct: 382 AIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGR 441
Query: 255 IVHGFMIKLGLELES---DLLISLTAVCR------------YQPNVTLWNAMISGYAKNG 299
VH MI GL+ ++ +LL+ + C +Q NV W +IS +NG
Sbjct: 442 QVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNG 501
Query: 300 YAEEAVKLFPKW----------------------MDYYIGKSEY--------RNNVIVNT 329
A E ++L D +GK+ + +++I +
Sbjct: 502 EASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSN 561
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
L++MY C S+D A + F+R + +DVV + + Y G E L+ + + P
Sbjct: 562 ALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRP 621
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 127/329 (38%), Gaps = 71/329 (21%)
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
+TL NA +S A G + + ++ + + +G S V+++ L+ MY KCGSV+ A
Sbjct: 11 ITLLNA-VSACAALGDSLQGKQIHARILSSGLGAS-----VLLSNSLVYMYGKCGSVEEA 64
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWS-------AFGSFDGLLSNEENEYGTALDC--S 244
FDR ++D++ +AMI Y HE A+ +G +E C S
Sbjct: 65 RNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFAS 124
Query: 245 CDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAVC------------RYQPNVTL 287
DL+F G+++H LG SD LIS+ + C ++P+V
Sbjct: 125 GDLKF---GRMLHEHF--LGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCT 179
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV----------------- 330
W +I+ Y ++G E A + K + +E +++T
Sbjct: 180 WTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLAL 239
Query: 331 -------------LIDMYAKCGS-VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
LI MY KC D A F R V+ SA YG H E
Sbjct: 240 GSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHW---EAI 296
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAG 405
F + G++P V+ A G
Sbjct: 297 KTFELMNLEGVKPNATTLTSVLRACATVG 325
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 50/231 (21%)
Query: 252 QGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLWNAMISGYA 296
QGK +H ++ GL L S+ L+ + C + ++ WNAMI+ YA
Sbjct: 28 QGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYA 87
Query: 297 KNGYAEEAVKLF---------PKWM----------------------DYYIGKSEYRNNV 325
++ ++A++L+ P + ++++G S + +
Sbjct: 88 QHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQI 147
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
+ N LI MY+ CGS+D A F+ + DV + + Y HG E + + + +
Sbjct: 148 VCNG-LISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQE 206
Query: 386 GIEPRHQHYARVVDL---LARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
G+ + V+D L H + + ++ L + +L+S +
Sbjct: 207 GLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMY 257
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 152/385 (39%), Gaps = 109/385 (28%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G +VHG ++ GL+ +DL RNA+IS Y + G K+F
Sbjct: 135 GLVVHGEAVRTGLD--ADLFT--------------RNALISFYCRIGDCRSGRKVF---- 174
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
D+ + R+ V N+ ++ Y CG VDLA FD +D + MI GYG
Sbjct: 175 DHGV-----RDLVSWNS-MVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG----E 224
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G D + E + D C ++ G HG M + + E
Sbjct: 225 MAGGVD--RARELFDQMPDRDLVCWNSMID-GYARHGRMDEARVLFEE----------MP 271
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------------------W 311
+ NV W+ +I GY + G EA++ F + W
Sbjct: 272 ERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRW 331
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ Y+ K + +V+V T LIDMY KCG +DLA + F+ K VV + M VG G HG
Sbjct: 332 LHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGY 391
Query: 372 G-----------------------------------EEGWVLFHHIRKH-GIEPRHQHYA 395
G EG +F+ + K G+EP+ +HY
Sbjct: 392 GLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYG 451
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIE 420
++DLL RAG + A I MP+E
Sbjct: 452 ALIDLLGRAGRVDQARNTIETMPME 476
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/557 (22%), Positives = 218/557 (39%), Gaps = 142/557 (25%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----------FLVCYLFDGLFDRTIV 56
PN T P+++ C L L G +HG + G F+ Y G+ + +
Sbjct: 128 PNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASL 187
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE-QGKIVHGFMIKLGLE 115
D + W+A G + N+++E G L+C C++ + G+ V+ ++ G +
Sbjct: 188 MFDEIVVRDVVSWTAL--VIGYVHNDDSEKG--LECLCEMRRIGGDGEKVNSRTLEGGFQ 243
Query: 116 LESDLLISLTAVCRYQPNV--------TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 167
+L + C + V ++++++S Y+K G EEA F + +D
Sbjct: 244 ACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVD----- 298
Query: 168 SEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTLDK---DVVMRSAMIVGYGLHEWSAF 223
+V T +I + A+ G + + +F+D +D D ++ S +++G+G
Sbjct: 299 ----KDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVRE 354
Query: 224 G-SFDGLLSN-----EENEYGTALDCSCDLEFLEQGK--------------------IVH 257
G +F GL+ ++ L C L + VH
Sbjct: 355 GKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVH 414
Query: 258 GFMIKLGLELE--------------SDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEE 303
++IK ++ + +L I+ CR Q +V WN +IS Y +G+ E
Sbjct: 415 CYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQRDVVTWNTLISSYTHSGHYAE 474
Query: 304 AVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVLID 333
A+ LF K + YI + + NV + T L+D
Sbjct: 475 AITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVD 534
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------- 372
MYAKCG ++ + F+ +KDV+ + M GYGLHG
Sbjct: 535 MYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAIT 594
Query: 373 --------------EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+EG LF ++ + I+P +H+A + DLL R+G A + +MP
Sbjct: 595 FLSLLSACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMP 654
Query: 419 IELRLSVRRALLSAWKI 435
I V LLSA KI
Sbjct: 655 ICPDGGVWGTLLSACKI 671
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 61/243 (25%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL- 230
NNV +++ LI +YA + FD T KD + +++I + + F +FD +
Sbjct: 62 NNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSH-FSNGNYFKAFDFYIQ 120
Query: 231 ----SNEENEYGTAL---DCSCDLEFLEQGKIVHGFMIKLGLELESDLL----ISLTAVC 279
+ N++ + C+ +L +LE+GK +HG + K GL E+ + + + A C
Sbjct: 121 MRYDNTPPNQFTIPMIVATCA-ELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKC 179
Query: 280 RYQPNVTL------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN---- 323
+ +L W A++ GY N +E+ ++ + M G E N
Sbjct: 180 GVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCE-MRRIGGDGEKVNSRTL 238
Query: 324 ------------------------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+ +V + L+ MY+KCG+V+ A F + +D
Sbjct: 239 EGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVD 298
Query: 354 KDV 356
KDV
Sbjct: 299 KDV 301
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 105/399 (26%), Positives = 155/399 (38%), Gaps = 119/399 (29%)
Query: 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------NN------------ 173
MISGYA A EA+ LF G++E+ NN
Sbjct: 180 MISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG 239
Query: 174 ----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FG 224
V V L+ MYAKCGS+D A F+ + DK+ + SAMI G S F
Sbjct: 240 LLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFS 299
Query: 225 S--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC 279
S G+ +E G CS DL +GK VH +++KLG E + L+ + A C
Sbjct: 300 SMHLSGIRPSEFTFVGVINACS-DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKC 358
Query: 280 R------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------ 309
+P++ LW +MI GY +NG E+A+ L+
Sbjct: 359 SSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVL 418
Query: 310 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
K + K + V + + L MYAKCG + + F R +DV+
Sbjct: 419 KACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVI 478
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIR---------------------------------- 383
+AM G +G G+E LF ++
Sbjct: 479 SWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMM 538
Query: 384 --KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+ G++PR +HYA +VD+L+RAG A +F + I+
Sbjct: 539 FDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATID 577
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 132/313 (42%), Gaps = 60/313 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V V + L++MY K G A FD +++ V + MI GY + + A G F +
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMR 201
Query: 231 SNEENE----YGTALDCSCDLEFLEQGKIVHGFMIKLG-LELES--DLLISLTAVC---- 279
EE E + + L E + GK +H +K G L + S + L+++ A C
Sbjct: 202 REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261
Query: 280 --------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
N W+AMI+G A++G +++A+KLF
Sbjct: 262 DALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
K + Y+ K + + + V T L+DMYAKC S+ A FD + D+V+ ++
Sbjct: 322 DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTS 381
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHA----FK 412
M GY +G E+ L+ + GI P A V+ + G HA +
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441
Query: 413 FIMNMPIELRLSV 425
F + +PI LS
Sbjct: 442 FGLEVPIGSALST 454
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 122/316 (38%), Gaps = 56/316 (17%)
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
V + L+++YAKC + A F+R +KDVV + +I GY H S L
Sbjct: 40 VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM 99
Query: 234 ENE--------YGTALDCSCDLEFLEQGKIVHGFMIKLG----LELESDLL-----ISLT 276
E + + L G++ H IK+ + + S L+ LT
Sbjct: 100 RAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLT 159
Query: 277 AVCRY------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-------- 322
R + N W MISGYA A EA+ LF G++E+
Sbjct: 160 PEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL 219
Query: 323 ------NN----------------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
NN V V L+ MYAKCGS+D A F+ + DK+ + S
Sbjct: 220 TLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWS 279
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYS---NHAFKFIMNM 417
AM G G ++ LF + GI P + V++ + G + +++ +
Sbjct: 280 AMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKL 339
Query: 418 PIELRLSVRRALLSAW 433
E ++ V AL+ +
Sbjct: 340 GFESQIYVMTALVDMY 355
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 82/203 (40%), Gaps = 45/203 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFD---RTIV 56
M ++ + P+ T V+ AC L + G +VH + LGF Y+ L D +
Sbjct: 301 MHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSS 360
Query: 57 FLDLYH-----------LWS------------RTEWSAFG--SFDGLLSNEENEYGTALD 91
+D LW+ S +G +G+L NE
Sbjct: 361 IVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKA 420
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISL-------------TAVCRYQP--NVTL 136
CS L LEQGK +H +K G LE + +L T V R P +V
Sbjct: 421 CS-SLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVIS 479
Query: 137 RNAMISGYAKNGYAEEAVKLFPK 159
NAMISG ++NG +EA++LF +
Sbjct: 480 WNAMISGLSQNGCGKEALELFEE 502
>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 752
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/460 (24%), Positives = 176/460 (38%), Gaps = 135/460 (29%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLL----ISLTAVCRY------------QPNVTLRN 138
+L L G+++H M ++G+E S LL + + CR + N R
Sbjct: 95 ELRSLSHGRLLHDRM-RMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRT 153
Query: 139 AMISGYAKNGYAEEAVKLF------------------------PKWMDY------YIGKS 168
MIS YA+ G ++AV LF P+ +D+ ++ ++
Sbjct: 154 TMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRA 213
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSF 226
+N + T +++MY KCG + A FD+ K V + ++VGY A F
Sbjct: 214 GLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLF 273
Query: 227 DGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-------SDLLI-- 273
L++ + + L LE L GK +H + KLGLE E D I
Sbjct: 274 VDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKC 333
Query: 274 -SLTAVCR-----YQPNVTLWNAMISGYAKNGYAEEAVKLFPK----------------- 310
S + CR +PN W+A+ISGY + EEAVK F
Sbjct: 334 SSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSI 393
Query: 311 ------WMDYYIGKSEYRNNVIVN--------TVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
D IG + + + + + LI MY+KCG +D A F+ + D+
Sbjct: 394 FQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDI 453
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHH----------------------------------- 381
V +A G+ +G E LF
Sbjct: 454 VAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDT 513
Query: 382 -IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+RK+ + P HY ++D+ AR+G + A KF+ NMP E
Sbjct: 514 MLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFE 553
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 117/303 (38%), Gaps = 56/303 (18%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
+VLKAC +L L +G ++H + LG + +D Y S E SA +
Sbjct: 290 VVLKACASLEELNLGKQIHACVAKLG------LESEVSVGTPLVDFYIKCSSFE-SACRA 342
Query: 75 FDGLLSNEENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 133
F + + + + C + +F E K K + +L S T +Q
Sbjct: 343 FQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSK-----NASILNSFTYTSIFQAC 397
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
L + I G +A+K IG S+Y + LI MY+KCG +D A
Sbjct: 398 SVLADCNIGGQVH----ADAIK------RSLIG-SQYG-----ESALITMYSKCGCLDDA 441
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLS-----NEENEYGTALDCSCD 246
F+ + D+V +A I G+ + A F+ ++S N CS
Sbjct: 442 NEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACS-H 500
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ--PNVTLWNAMISGYAKNGYAEEA 304
+EQGK M++ +Y P + ++ MI YA++G +EA
Sbjct: 501 AGLVEQGKHCLDTMLR-----------------KYNVAPTIDHYDCMIDIYARSGLLDEA 543
Query: 305 VKL 307
+K
Sbjct: 544 LKF 546
>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 140/337 (41%), Gaps = 77/337 (22%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
I K ++V V + LIDMY+KCG V+ A FDR ++KD+V +AM+ GYG H ++ G
Sbjct: 36 ILKYSIESDVYVISSLIDMYSKCGEVEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEG 95
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
L ++ + G + + ++ GF K G + + L +P+
Sbjct: 96 F---ALMDKMEKLGIKPN------VITWNSLISGFAQK-GDDAMVSKMFELMISNGVEPD 145
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------------------------ 314
V W ++ISG +N E A F + +
Sbjct: 146 VISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPTSATISTVLAACATMANVRRGREIHG 205
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
Y +++ V + L+DMYAKCG + A + F +++ V ++M GY HG +E
Sbjct: 206 YAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFYMMPERNTVTWNSMIFGYANHGYCDE 265
Query: 375 GWVLFHHIRK-------------------------HG------------IEPRHQHYARV 397
LF + K HG I PR +HYA +
Sbjct: 266 AIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSLFLLMQQKYKIVPRLEHYACM 325
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
VDLL RAG N A+ I MP++ L V ALL A +
Sbjct: 326 VDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGACR 362
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/472 (23%), Positives = 176/472 (37%), Gaps = 136/472 (28%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQ-------PNVTLRN-----AMISG 143
L G+ +HG+ +K G+ L L S+ + C P +T ++ +I
Sbjct: 237 LSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGA 296
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
Y + G A EAV+LF K I + + ++
Sbjct: 297 YCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDS 356
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----------LHEWSAF 223
V++ LI MY K VD+A F +D S M+ GY L+
Sbjct: 357 VLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQC 416
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-------------- 269
D L + + CS L L G+ VH + IK L+ S
Sbjct: 417 RDHDEFLCDITSLVSAISSCS-RLGRLRLGQSVHCYSIKCLLDENSITNSLIGMYGRCGN 475
Query: 270 -DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD--------------- 313
+L + AV + + +V WNA+IS Y+ G + +A+ L+ + +
Sbjct: 476 FELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVIS 535
Query: 314 ---------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
Y+ ++V ++T L+DMY KCG + A FD L +DVV
Sbjct: 536 ACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVT 595
Query: 359 RSAMTVGYGLHG-----------------------------------LGEEGWVLFHHIR 383
+ M GYG+HG L +EG LF +
Sbjct: 596 WNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIRMG 655
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +EP +HYA +VDLL ++G A ++ MPI+ V LLSA K+
Sbjct: 656 GYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKV 707
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 104/268 (38%), Gaps = 59/268 (22%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG------------YGLHEW 220
+V V++ L+ MYA+CGS+ A FD +++DVV +A++ G Y +
Sbjct: 150 SVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMI 209
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTA 277
G ++ E G L+ L L G+ +HG+ +K G+ L L S+ +
Sbjct: 210 RLAGDSGARPNSRTMESG--LEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYS 267
Query: 278 VCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
C + +V W +I Y + G A EAV+LF
Sbjct: 268 KCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSC 327
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K I + + ++V++ LI MY K VD+A F +D
Sbjct: 328 VLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRD 387
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
S M GY GL + L+ ++
Sbjct: 388 DESWSLMVAGYCKAGLDVKCLELYRQMQ 415
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY----------------- 130
T + +L LE G+++H ++ +GLE SD+ IS V Y
Sbjct: 532 TVISACANLAALEHGELLHSYVKNMGLE--SDVSISTALVDMYTKCGQLGTARGIFDSML 589
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
Q +V N MISGY +G A +A+KLF +
Sbjct: 590 QRDVVTWNVMISGYGMHGEANQALKLFSE 618
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 153/351 (43%), Gaps = 91/351 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPK---------------------------W--- 160
+ N+ + MI GYA+ G+AE+A++++ K W
Sbjct: 181 KKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKK 240
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YGL 217
+ +I +S ++++V V T L++MY KCGS++ A + FD+ ++++V+ + MI G YG
Sbjct: 241 IHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGR 300
Query: 218 HEWSAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
+ AF F +G + N Y + L+ + LE K VH + GL L DL
Sbjct: 301 GQ-EAFHLFLQMQREGFIPNSYT-YVSILNANASAGALEWVKEVHSHAVNAGLAL--DLR 356
Query: 273 ISLTAVCRYQPNVTL-----------------WNAMISGYAKNGYAEEAVKLF------- 308
+ V Y + ++ W MI G A++G +EA LF
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNG 416
Query: 309 --PKWMDY-----------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
P Y + ++ + +++ + LI MYAKCGS+D
Sbjct: 417 CLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDD 476
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
A + FD D+DV+ +AM G +G G E + +F +++ G+ P Y
Sbjct: 477 ARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTY 527
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 127/533 (23%), Positives = 198/533 (37%), Gaps = 145/533 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF--------------LVC-------YL 46
PN T +LKAC +L G ++H I GF + C +
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLI 276
Query: 47 FDGLFDR-----TIVFLDLYHLWSRTEWSAFGSF-----DGLLSNEENEYGTALDCSCDL 96
FD + +R T++ L H E AF F +G + N Y + L+ +
Sbjct: 277 FDKMVERNVISWTVMIGGLAHYGRGQE--AFHLFLQMQREGFIPNSYT-YVSILNANASA 333
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA----------------- 139
LE K VH + GL L DL + V Y + ++ +A
Sbjct: 334 GALEWVKEVHSHAVNAGLAL--DLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTV 391
Query: 140 MISGYAKNGYAEEAVKLF---------PKWMDY-----------------------YIGK 167
MI G A++G +EA LF P Y + +
Sbjct: 392 MIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEE 451
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL----HEWSAF 223
+ + +++ + LI MYAKCGS+D A + FD D+DV+ +AM+ G HE AF
Sbjct: 452 AGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHE--AF 509
Query: 224 GSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F +GL+ + Y + L+ + LE VH ++ G L SD + +
Sbjct: 510 TVFLQMQQEGLVP-DSTTYLSLLNTHGSTDALEWVNEVHKHAVETG--LISDFRVGSAFI 566
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-DYYIGKSE 320
Y +VT WNAMI G A+ EA+ LF + + +I +
Sbjct: 567 HMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDAT 626
Query: 321 YRNNVI----------------------------VNTVLIDMYAKCGSVDLAPMFFDRTL 352
N++ V L+ Y+KCG+V A FD +
Sbjct: 627 TFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMV 686
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+++V + M G HG G + + F + + GI P Y ++ A G
Sbjct: 687 ERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTG 739
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 143/403 (35%), Gaps = 124/403 (30%)
Query: 138 NAMISGYAKNGYAEEAVKLF---------PKWMDYY-----------------IGKSEYR 171
NAM+ G A+NG EA +F P Y + K
Sbjct: 493 NAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVE 552
Query: 172 NNVI----VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEWSA 222
+I V + I MY +CGS+D A + FD+ + V +AMI G G S
Sbjct: 553 TGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSL 612
Query: 223 FGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F +G + + + L + D E LE K VH GL DL + V
Sbjct: 613 FLQMQREGFIP-DATTFINILSANVDEEALEWVKEVHSHATDAGL---VDLRVGNALVHT 668
Query: 281 Y-----------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY 314
Y + NVT W MI G A++G +A F P Y
Sbjct: 669 YSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTY 728
Query: 315 YIGKS------------EYRNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLD 353
S E N+ + V L+ MYAKCGS+D A FD ++
Sbjct: 729 VSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVE 788
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK----------------------------- 384
+DV + M G HG G E F ++
Sbjct: 789 RDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQ 848
Query: 385 -------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+GIEP +HY +VDLL RAG A FI+NMPIE
Sbjct: 849 FLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIE 891
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 123/305 (40%), Gaps = 55/305 (18%)
Query: 156 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
L K + I KS N+ V L+ +Y +CG + A FD+ L K++ + + MI GY
Sbjct: 135 LLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGY 194
Query: 216 GL--HEWSAFGSFDGLLSN--EENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
H A +D + + NE Y + L C L+ GK +H +I+ G +S
Sbjct: 195 AEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSG--FQS 252
Query: 270 DLLISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLF---- 308
D+ + V Y + NV W MI G A G +EA LF
Sbjct: 253 DVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQ 312
Query: 309 -----PKWMDYY--------IGKSEYRNNV-------------IVNTVLIDMYAKCGSVD 342
P Y G E+ V V L+ MYAK GS+D
Sbjct: 313 REGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSID 372
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
A + FD ++D+ + M G HG G+E + LF ++++G P Y +++ A
Sbjct: 373 DARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASA 432
Query: 403 RAGYS 407
A S
Sbjct: 433 IASTS 437
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 33/182 (18%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPK---------------------------W--- 311
+ N+ +W MI GYA+ G+AE+A++++ K W
Sbjct: 181 KKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKK 240
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ +I +S ++++V V T L++MY KCGS++ A + FD+ ++++V+ + M G +G
Sbjct: 241 IHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGR 300
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG---YSNHAFKFIMNMPIELRLSVRRA 428
G+E + LF +++ G P Y +++ A AG + +N + L L V A
Sbjct: 301 GQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNA 360
Query: 429 LL 430
L+
Sbjct: 361 LV 362
>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 117/445 (26%), Positives = 171/445 (38%), Gaps = 137/445 (30%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPK----------------------------W--- 160
+ L N+MIS Y G+ EA+ LF K W
Sbjct: 326 SDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRG 385
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LH 218
+ + KS + + L+ MY K + A F++ DV+ + MI + +
Sbjct: 386 LHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMF 445
Query: 219 EWSAFGSFDGLLSNEE--NEYG-TALDCSC----DLEFLEQGKIVHGFMIKLGLELESDL 271
AF F + +E N Y +L C DL F G+ +HGF IK GLE+ + L
Sbjct: 446 RAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVF---GRSIHGFAIKNGLEINTSL 502
Query: 272 LISLTAV----------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
SLT + C Q ++ WN++IS Y KN A +A+ LF ++
Sbjct: 503 NTSLTEMYINCGDERAATNMFTRCP-QRDLVSWNSLISSYIKNDNAGKALLLF----NHM 557
Query: 316 IGKSEYRNNVIVNTV-----------------------------------LIDMYAKCGS 340
I + E + I+N + I MYA+CG
Sbjct: 558 ISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGK 617
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE-------------------------- 374
+ A F + +V +AM GYG+HG G +
Sbjct: 618 LQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSA 677
Query: 375 ---------GWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
G LFH +R GI P+ HY +VDLL R G+ + A FI +MPIE S
Sbjct: 678 CSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDAS 737
Query: 425 VRRALLSAWKIPMQQWENMLQTIRG 449
+ RALLS+ +I +L+TI G
Sbjct: 738 IWRALLSSCQIKSNN--KLLETIFG 760
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 135/345 (39%), Gaps = 73/345 (21%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSF--- 226
N+V V T L+D Y KCG V A F ++D+V +A+I GY L A F
Sbjct: 93 NDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEM 152
Query: 227 --DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ-- 282
GL N L C LE L G+ +HG+ ++ GL + D + V Y
Sbjct: 153 KKAGLTPNSRTVVALLLACGEMLE-LRLGQEIHGYCLRNGL-FDMDAYVGTALVGFYMRF 210
Query: 283 --------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------------ 316
N+ WNA+I+G+ G +A+KL+ + I
Sbjct: 211 DAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQ 270
Query: 317 GKSEYR------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+EY N++ + L++MY+ GS++ + F+ D +
Sbjct: 271 ACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAAL 330
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL--------LARAGYSNHA 410
++M Y G E LF +R I+ + A ++ L + G HA
Sbjct: 331 WNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHA 390
Query: 411 FKFIMNMPIELRLSVRRALLSAW----KIPMQQWENMLQTIRGID 451
K IEL + ALLS + +I Q+ + + +RG+D
Sbjct: 391 MK----SGIELDAYLGNALLSMYVKHNQITAAQY--VFEKMRGLD 429
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 120/570 (21%), Positives = 214/570 (37%), Gaps = 145/570 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSL----------GFLVCYLFDGL 50
M+ + P+ T PLVLKAC L ++ G R+H I L + Y GL
Sbjct: 51 MESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGL 110
Query: 51 F-DRTIVFLDLYHLWSRTEWSAFGS-------------------FDGLLSNEENEYGTAL 90
+ + VF+++ W+A S GL N L
Sbjct: 111 VAEASKVFVEMPE-RDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLL 169
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP----------------NV 134
C LE L G+ +HG+ ++ GL + D + V Y N+
Sbjct: 170 ACGEMLE-LRLGQEIHGYCLRNGL-FDMDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNI 227
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYI------------GKSEYR----------- 171
NA+I+G+ G +A+KL+ + I +EY
Sbjct: 228 VSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQL 287
Query: 172 -------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWS 221
N++ + L++MY+ GS++ + F+ D + ++MI +G+G H
Sbjct: 288 AIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHA-E 346
Query: 222 AFGSFDGL----LSNEENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELESDLLISLT 276
A F + + + L DL + G+ +H +K G+EL++ L +L
Sbjct: 347 AIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALL 406
Query: 277 AVCRYQPNVTL---------------WNAMISGYAKNGYAEEAVKLF-------PKWMDY 314
++ +T WN MIS +A++ + +A +LF K+ Y
Sbjct: 407 SMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSY 466
Query: 315 YI---------------GKSEY----RN----NVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
I G+S + +N N +NT L +MY CG A F R
Sbjct: 467 TIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRC 526
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA------- 404
+D+V +++ Y + + +LF+H+ +EP + ++++L
Sbjct: 527 PQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEP---NSVTIINILTSCTQLAHLP 582
Query: 405 -GYSNHAFKFIMNMPIELRLSVRRALLSAW 433
G HA+ + +E+ S+ A ++ +
Sbjct: 583 LGQCLHAYTTRREVSLEMDASLANAFITMY 612
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 121/499 (24%), Positives = 185/499 (37%), Gaps = 146/499 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T P V+KA L + +G VHG L F +DLY L S
Sbjct: 124 PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSF---------------GMDLYILNSLV 168
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
+ +G+ G LS E + + C + + ++ F E +L + +
Sbjct: 169 RF--YGAC-GDLSMAERLF-KGISCK---DVVSWNSMISAFAQGNCPEDALELFLKMERE 221
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
PN ++S AK E F +W+ YI + + ++ + ++DMY KC
Sbjct: 222 -NVMPNSVTMVGVLSACAKKLDLE-----FGRWVCSYIERKGIKVDLTLCNAMLDMYTKC 275
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDL 247
GSVD A FD ++DV + M+ GY + G +D
Sbjct: 276 GSVDDAQKLFDEMPERDVFSWTIMLDGY-----AKMGDYDA------------------- 311
Query: 248 EFLEQGKIVHGFM-IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK 306
++V M +K + WN +IS Y +NG +EA+
Sbjct: 312 -----ARLVFNAMPVK---------------------EIAAWNVLISAYEQNGKPKEALA 345
Query: 307 LFPK-------------------------------WMDYYIGKSEYRNNVIVNTVLIDMY 335
+F + W+ YI + N + + L+DMY
Sbjct: 346 IFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMY 405
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG----------------------- 372
AKCGS++ A F ++DV + SAM G G+HG G
Sbjct: 406 AKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFT 465
Query: 373 ------------EEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
+EG V FH + +G+ P +HYA +VD+L RAG+ A + I M
Sbjct: 466 NVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMST 525
Query: 420 ELRLSVRRALLSAWKIPMQ 438
SV ALL A + M
Sbjct: 526 TPSASVWGALLGACSLHMN 544
>gi|302768953|ref|XP_002967896.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
gi|300164634|gb|EFJ31243.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
Length = 471
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 148/366 (40%), Gaps = 94/366 (25%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL- 217
K + +I + ++ + +L+ MY +CG+ ++A FDR D++V + MI Y
Sbjct: 19 KRIHQHIVDRGHGDDRFLANLLVQMYGQCGAAEIARAVFDRIADRNVFSWTLMIAAYAQN 78
Query: 218 -HEWSAFGSFDGLLSNEENEYGTALD---------CSCDLEFLEQGKIVHGFMIKLGLEL 267
H+ +A F E + +G D LE L QG+ +H ++ LG +
Sbjct: 79 GHDAAALRLF-----REMDLHGEPADRIVLVEILGVCARLELLAQGQTIHARIVALGFDA 133
Query: 268 ES---DLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW- 311
++ + ++ A C + + +V WNAMI+ YA+ G A +A+ +F +
Sbjct: 134 DTVAATAIFNMYARCGFLRRARELFDRLEEKSVVSWNAMITAYARTGQARQALDIFRRLD 193
Query: 312 --------MDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
M Y I + + V LI+MY KCG V+
Sbjct: 194 QEGIEADEMSYSGLLAAFAMRQSLDKGRILHARIKACGFEAMLQVANPLINMYGKCGCVE 253
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHG-------------------------------- 370
A FD K++V + + Y +G
Sbjct: 254 EARRIFDAVPSKNIVSWNTILAAYAGNGRVTEALDLFAKIAMPPDWISFCVVLQACSHAG 313
Query: 371 LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
L +E W +R +HGIEPR HY+ +V++ +AG A + I MP+E + R+L
Sbjct: 314 LVDEAWDFLLSMRSQHGIEPRRAHYSAMVEIFGKAGKLEEAERLIAAMPVEPDAVIWRSL 373
Query: 430 LSAWKI 435
L A KI
Sbjct: 374 LGACKI 379
>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 117/445 (26%), Positives = 171/445 (38%), Gaps = 137/445 (30%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPK----------------------------W--- 160
+ L N+MIS Y G+ EA+ LF K W
Sbjct: 326 SDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRG 385
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LH 218
+ + KS + + L+ MY K + A F++ DV+ + MI + +
Sbjct: 386 LHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMF 445
Query: 219 EWSAFGSFDGLLSNEE--NEYG-TALDCSC----DLEFLEQGKIVHGFMIKLGLELESDL 271
AF F + +E N Y +L C DL F G+ +HGF IK GLE+ + L
Sbjct: 446 RAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVF---GRSIHGFAIKNGLEINTSL 502
Query: 272 LISLTAV----------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
SLT + C Q ++ WN++IS Y KN A +A+ LF ++
Sbjct: 503 NTSLTEMYINCGDERAATNMFTRCP-QRDLVSWNSLISSYIKNDNAGKALLLF----NHM 557
Query: 316 IGKSEYRNNVIVNTV-----------------------------------LIDMYAKCGS 340
I + E + I+N + I MYA+CG
Sbjct: 558 ISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGK 617
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE-------------------------- 374
+ A F + +V +AM GYG+HG G +
Sbjct: 618 LQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSA 677
Query: 375 ---------GWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
G LFH +R GI P+ HY +VDLL R G+ + A FI +MPIE S
Sbjct: 678 CSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDAS 737
Query: 425 VRRALLSAWKIPMQQWENMLQTIRG 449
+ RALLS+ +I +L+TI G
Sbjct: 738 IWRALLSSCQIKSNN--KLLETIFG 760
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 135/345 (39%), Gaps = 73/345 (21%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSF--- 226
N+V V T L+D Y KCG V A F ++D+V +A+I GY L A F
Sbjct: 93 NDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEM 152
Query: 227 --DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ-- 282
GL N L C LE L G+ +HG+ ++ GL + D + V Y
Sbjct: 153 KKAGLTPNSRTVVALLLACGEMLE-LRLGQEIHGYCLRNGL-FDMDAYVGTALVGFYMRF 210
Query: 283 --------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------------ 316
N+ WNA+I+G+ G +A+KL+ + I
Sbjct: 211 DAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQ 270
Query: 317 GKSEYR------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+EY N++ + L++MY+ GS++ + F+ D +
Sbjct: 271 ACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAAL 330
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL--------LARAGYSNHA 410
++M Y G E LF +R I+ + A ++ L + G HA
Sbjct: 331 WNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHA 390
Query: 411 FKFIMNMPIELRLSVRRALLSAW----KIPMQQWENMLQTIRGID 451
K IEL + ALLS + +I Q+ + + +RG+D
Sbjct: 391 MK----SGIELDAYLGNALLSMYVKHNQITAAQY--VFEKMRGLD 429
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 120/570 (21%), Positives = 214/570 (37%), Gaps = 145/570 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSL----------GFLVCYLFDGL 50
M+ + P+ T PLVLKAC L ++ G R+H I L + Y GL
Sbjct: 51 MESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDFYCKCGL 110
Query: 51 F-DRTIVFLDLYHLWSRTEWSAFGS-------------------FDGLLSNEENEYGTAL 90
+ + VF+++ W+A S GL N L
Sbjct: 111 VAEASKVFVEMPE-RDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLL 169
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP----------------NV 134
C LE L G+ +HG+ ++ GL + D + V Y N+
Sbjct: 170 ACGEMLE-LRLGQEIHGYCLRNGL-FDMDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNI 227
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYI------------GKSEYR----------- 171
NA+I+G+ G +A+KL+ + I +EY
Sbjct: 228 VSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQL 287
Query: 172 -------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWS 221
N++ + L++MY+ GS++ + F+ D + ++MI +G+G H
Sbjct: 288 AIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHA-E 346
Query: 222 AFGSFDGL----LSNEENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELESDLLISLT 276
A F + + + L DL + G+ +H +K G+EL++ L +L
Sbjct: 347 AIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALL 406
Query: 277 AVCRYQPNVTL---------------WNAMISGYAKNGYAEEAVKLF-------PKWMDY 314
++ +T WN MIS +A++ + +A +LF K+ Y
Sbjct: 407 SMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSY 466
Query: 315 YI---------------GKSEY----RN----NVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
I G+S + +N N +NT L +MY CG A F R
Sbjct: 467 TIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRC 526
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA------- 404
+D+V +++ Y + + +LF+H+ +EP + ++++L
Sbjct: 527 PQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEP---NSVTIINILTSCTQLAHLP 582
Query: 405 -GYSNHAFKFIMNMPIELRLSVRRALLSAW 433
G HA+ + +E+ S+ A ++ +
Sbjct: 583 LGQCLHAYTTRREVSLEMDASLANAFITMY 612
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 167/426 (39%), Gaps = 126/426 (29%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------- 166
PN L N M+ YA G + EA+ L+ +G
Sbjct: 95 PNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVV 154
Query: 167 -----KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-- 219
++ + +++ V L+DMYAKCG + A FDR L +DVV +AMI Y E
Sbjct: 155 HGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERP 214
Query: 220 WSAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKI---VHGFMIKLGLELESDL 271
A F +G L +E TA+ + + L G++ VHG+ + G + +
Sbjct: 215 LKALMLFRKMQEEGFLGDEI----TAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSV 270
Query: 272 ---LISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW----- 311
++ + A C + N WN+M+SGY +NG +A+ LF +
Sbjct: 271 GNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASEC 330
Query: 312 -------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ ++ S+ + + ++DMY KCG +D A
Sbjct: 331 DPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVE 390
Query: 347 FFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------- 391
F+ ++DV + + GYG+HG G+E LF ++ G+EP
Sbjct: 391 MFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHA 450
Query: 392 ----------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
+HYA +VD+L RAG+ N AF+ I +P V AL
Sbjct: 451 GLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGAL 510
Query: 430 LSAWKI 435
L A +I
Sbjct: 511 LLACRI 516
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 118/497 (23%), Positives = 196/497 (39%), Gaps = 108/497 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
+Q V+PN T +VL +C L + +G +VH + +GF +G +D+
Sbjct: 173 LQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEG------SLIDM 226
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
Y + A FD ++ + + + + E+ V M KLGL +
Sbjct: 227 YSKCG-SLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVA 285
Query: 121 LISLTAVC---------------RYQPNVTLRNAMISGYAKNGYAEEAVKLFP------- 158
+++ C NV N MISG+ K G EA+ F
Sbjct: 286 FVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGV 345
Query: 159 KWMDYYIG-----------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
K +G K +NV V + LI+MYAKC ++ A
Sbjct: 346 KSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKK 405
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGL-LSNEENEYGTALD-CSCDLE 248
FD ++++V+ +AM+ GY + +++ F G +E Y + L C+C LE
Sbjct: 406 VFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACAC-LE 464
Query: 249 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------------RYQPNVTLWNAMI 292
LE G+ +H F+IK E + L+ + A C R + NV+ WNA+I
Sbjct: 465 CLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVS-WNAII 523
Query: 293 SGYAKNGYAEEAVKLFPKWM------------------------------DYYIGKSEYR 322
GY + +EA +F + + ++ KS +
Sbjct: 524 VGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQ 583
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+ + LIDMY KCG+++ A F + VV +A+ GY + L E LF +
Sbjct: 584 TCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL-VEAIDLFQEM 642
Query: 383 RKHGIEPRHQHYARVVD 399
+ G+ P +A ++D
Sbjct: 643 QNEGLNPSEITFASLLD 659
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 172/421 (40%), Gaps = 104/421 (24%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------Q 131
G+ L LE L G +VH IK GL LI++ A C +
Sbjct: 353 GSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDE 412
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPK------WMD----------------------- 162
N+ L NAM+ GYA+NGYA + +KLF + W D
Sbjct: 413 RNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQL 472
Query: 163 -YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--E 219
+I K + N+ V L+DMYAKCG+++ A F+ ++D V +A+IVGY E
Sbjct: 473 HSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDE 532
Query: 220 WSAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL---ESDL 271
AF F DG ++ +E + L +L+ LEQG+ VH F++K GL+
Sbjct: 533 DEAFNMFRRMILDG-IAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSS 591
Query: 272 LISLTAVC------RY------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319
LI + C RY +V NA+I+GYA+N EA+ LF + + + S
Sbjct: 592 LIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPS 650
Query: 320 E-------------YRNNV------------------IVNTVLIDMYAKCG-SVDLAPMF 347
E Y+ N+ + L+ MY D +F
Sbjct: 651 EITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILF 710
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA---RVVDLLARA 404
+ K ++ +A+ G+ +G EE L+ + ++ P +A R +LA
Sbjct: 711 SEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASL 770
Query: 405 G 405
G
Sbjct: 771 G 771
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 160/394 (40%), Gaps = 72/394 (18%)
Query: 72 FGSFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAV 127
FGS +S + Y L L ++ GK VH +IK+G E S LI + +
Sbjct: 170 FGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSK 229
Query: 128 CR------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 175
C P+ AMI+GY + G EEA+K+F + + +
Sbjct: 230 CGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQ-----V 284
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL---- 229
+I G +D A F + + +VV + MI G+ + A F +
Sbjct: 285 AFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTG 344
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY----- 281
+ + + G+ L LE L G +VH IK GL LI++ A C
Sbjct: 345 VKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAK 404
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------WMD--------------- 313
+ N+ LWNAM+ GYA+NGYA + +KLF + W D
Sbjct: 405 KVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLE 464
Query: 314 ---------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+I K + N+ V L+DMYAKCG+++ A F+ ++D V +A+ V
Sbjct: 465 CLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIV 524
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
GY +E + +F + GI P A ++
Sbjct: 525 GYVQEEDEDEAFNMFRRMILDGIAPDEVSLASIL 558
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/479 (23%), Positives = 184/479 (38%), Gaps = 137/479 (28%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------------RYQPNVT 135
C+C LE LE G+ +H F+IK E + L+ + A C R + NV+
Sbjct: 460 CAC-LECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVS 518
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWM------------------------------DYYI 165
NA+I GY + +EA +F + + ++
Sbjct: 519 W-NAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFL 577
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-SAFG 224
KS + + + LIDMY KCG+++ A F + VV +A+I GY ++ A
Sbjct: 578 VKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVEAID 637
Query: 225 SFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL-ISLTAV- 278
F + L+ E + + LD L G+ +H + K GL + D L +SL +
Sbjct: 638 LFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMY 697
Query: 279 ---------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------DYYIG 317
+Y + LW A+ISG+ +NG +EEA++L+ + D
Sbjct: 698 MNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATF 757
Query: 318 KSEYR------------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
S R ++ + + ++DMYAKCG + + F+
Sbjct: 758 ASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGS 817
Query: 354 K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIR----------------------------- 383
K DV+ ++M VG+ +G E +F ++
Sbjct: 818 KNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGRE 877
Query: 384 -------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ I PR H A ++DLL R G+ A +FI + E + LL A +I
Sbjct: 878 IFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRI 936
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 126/312 (40%), Gaps = 61/312 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL 229
N LIDMY+KCGS+ A FD +D D V +AMI GY GL E A F+ +
Sbjct: 216 NSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPE-EALKVFEDM 274
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG-LELESDLLISLTAVCRYQPNVTLW 288
+ G D + F+ V + LG L+ DL + + NV W
Sbjct: 275 -----QKLGLVPD---QVAFV----TVITACVGLGRLDDACDLFVQMP-----NTNVVAW 317
Query: 289 NAMISGYAKNGYAEEAVKLFP-------KWMDYYIG-----------------------K 318
N MISG+ K G EA+ F K +G K
Sbjct: 318 NVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIK 377
Query: 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVL 378
+NV V + LI+MYAKC ++ A FD ++++V+ +AM GY +G + L
Sbjct: 378 QGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKL 437
Query: 379 FHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAF----KFIMNMPIELRLSVRRAL 429
F +R G P Y ++ A G H+F F N+ +E L A
Sbjct: 438 FSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAK 497
Query: 430 LSAWKIPMQQWE 441
A + QQ+E
Sbjct: 498 CGALEEARQQFE 509
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 28/249 (11%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE------WSAFGSFDGL 229
+ + ++D+YAKCG+V+ A F++ +D++ ++++ Y W FGS
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIW-CFGSLQNC 176
Query: 230 -LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCR----- 280
+S + Y L L ++ GK VH +IK+G E S LI + + C
Sbjct: 177 GVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDA 236
Query: 281 -------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 333
P+ W AMI+GY + G EEA+K+F + + + +I
Sbjct: 237 RKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQ-----VAFVTVIT 291
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH 393
G +D A F + + +VV + M G+ G E F ++ K G++
Sbjct: 292 ACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRST 351
Query: 394 YARVVDLLA 402
V+ +A
Sbjct: 352 LGSVLSAIA 360
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV----------- 330
+ ++ WN+++S Y++ G E+ + F + + +++ +++++
Sbjct: 144 KRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQ 203
Query: 331 -------------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
LIDMY+KCGS+ A FD +D D V +AM GY GL
Sbjct: 204 VHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGL 263
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
EE +F ++K G+ P + V+ G + A + MP
Sbjct: 264 PEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMP 310
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 54/209 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLF--------- 51
MQ + P+ T +L AC L +G ++H I G L +DG F
Sbjct: 642 MQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLL----YDGDFLGVSLLVMY 697
Query: 52 -------DRTIVFLDLYHLWSRTEWSAF--GSFDGLLSNE----------------ENEY 86
D I+F + + S W+A G S E + +
Sbjct: 698 MNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATF 757
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCR-------------Y 130
+ L L L G+++H + +GL EL ++ + A C
Sbjct: 758 ASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGS 817
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
+ +V N+MI G+AKNGYAE A+K+F +
Sbjct: 818 KNDVISWNSMIVGFAKNGYAENALKIFDE 846
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
+ + ++D+YAKCG+V+ A F++ +D++ +++ Y G E+ F ++ G
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCG 177
Query: 387 IEPRHQHYARVVDLLAR 403
+ P YA V+ AR
Sbjct: 178 VSPNQFTYAIVLSSCAR 194
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 123/524 (23%), Positives = 201/524 (38%), Gaps = 119/524 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ + ++P+ T +L AC +L L G ++H +F G Y+ +G LDL
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG------SLLDL 288
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
Y E + ++ N + L +L + G+I +DL
Sbjct: 289 YVKCGDVETAL------VIFNSSDRTNVVL---WNLMLVAFGQI-------------NDL 326
Query: 121 LISLTAVCRYQPNVTLRNAMI-SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
S C+ Q N + + L + + K+ + +++ V+ V
Sbjct: 327 AKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSV-KTGFESDMYVSGV 385
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLS----NE 233
LIDMY+K G ++ A + +KDVV ++MI GY HE A +F + +
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC----------- 279
+A+ + + QG +H + G + + L++L A C
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLF----------------------------- 308
++ +T WN ++SG+A++G EEA+K+F
Sbjct: 506 EIEHKDEIT-WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564
Query: 309 -PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
K + + K+ + V LI +Y KCGS + A M F +++ V + +
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCS 624
Query: 368 LHGLGEEGWVLFHHIRK------------------------------------HGIEPRH 391
HG G E LF ++K +GI PR
Sbjct: 625 QHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA V+D+ RAG + A KFI MPI V R LLSA K+
Sbjct: 685 DHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKV 728
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 130/334 (38%), Gaps = 85/334 (25%)
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------------------- 171
AM+SGYA+NG EEA+ L+ + + + Y
Sbjct: 113 AMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKH 172
Query: 172 ---NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHEWSAF 223
+ + V +I +Y +CGS LA F +D V + +I G+G H F
Sbjct: 173 GFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIF 232
Query: 224 G--SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLTA 277
F GL S + + L L L++G +H ++ K G+ +E LL L
Sbjct: 233 EEMQFSGL-SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLL-DLYV 290
Query: 278 VC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY- 315
C + NV LWN M+ + + ++ +LF P Y
Sbjct: 291 KCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPC 350
Query: 316 ------------IG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+G K+ + +++ V+ VLIDMY+K G ++ A + +KD
Sbjct: 351 ILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKD 410
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
VV ++M GY H ++ F ++K GI P
Sbjct: 411 VVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWP 444
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 118/282 (41%), Gaps = 58/282 (20%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA 222
G +YR IV +LID+Y+K G V A F+ +D V AM+ GY GL E A
Sbjct: 72 GLGKYR---IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGE-EA 127
Query: 223 FGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL 275
G + + + + L E QG+++H K G E + +I+L
Sbjct: 128 LGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITL 187
Query: 276 TAVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK------------ 310
C ++ VT +N +ISG+A+ G+ E A+++F +
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVT-FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246
Query: 311 ------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ Y+ K+ ++ I+ L+D+Y KCG V+ A + F+ +
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
+VV+ + M V +G + + LF ++ GI P Y
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348
>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 158/372 (42%), Gaps = 72/372 (19%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------ 166
+ + L N M+SG KN +EA+ +F + IG
Sbjct: 169 ERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMG 228
Query: 167 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
K + ++ V T L +Y+KCG ++ A + F + D+V +AMI GY +
Sbjct: 229 IQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNE 288
Query: 221 --SAFGSFDGLLSNEENEYGTALDCSCDLEF----LEQGKIVHGFMIKLGLELESDLLIS 274
S+ F LL + E +++ + F L + +HGF K G+ S + +
Sbjct: 289 TESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTA 348
Query: 275 LTAVCR---------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319
LT V + ++ WNAMISGYA+NG E+A+ LF + + K
Sbjct: 349 LTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQE-----MQKC 403
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFD----RTLDKDVVMRSAMTVGYGLH------ 369
E R N + T ++ A+ G++ L D + + ++ M + G+
Sbjct: 404 EVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSRVSPTGVTFLSVLY 463
Query: 370 -----GLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
GL EG +F + HG EP +HYA +VDLL RAG + A FI MP+E
Sbjct: 464 ACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGP 523
Query: 424 SVRRALLSAWKI 435
V ALL A I
Sbjct: 524 PVWGALLGACMI 535
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 118/457 (25%), Positives = 181/457 (39%), Gaps = 149/457 (32%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G+ VH F+IKLGL + C V + N+++ Y K G AE A +F +
Sbjct: 182 GRKVHSFVIKLGL-----------SSC-----VPVANSVLYMYGKCGDAETARAVFERMK 225
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLH 218
+SE N +V+ +Y G +DLA F+ ++ +V +A+I GY GL
Sbjct: 226 ----VRSESSWNAMVS-----LYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLD 276
Query: 219 EWSAFGSFDGLL---SNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL- 272
+ A F +L S E +E+ + L +L L+ GK +H ++++ G+ S ++
Sbjct: 277 DM-ALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMN 335
Query: 273 -----------------------------ISLTAVCR------------------YQPNV 285
IS TA+ +V
Sbjct: 336 ALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDV 395
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDY--------------------YIG-------- 317
W AMI GY +NG +EA++LF + Y+G
Sbjct: 396 IAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCR 455
Query: 318 --KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DKDVVMRSAMTVGYGLHGLGEE 374
+S +V V+ +I +YA+ GSV LA FD+ K+ V ++M V HGLGE+
Sbjct: 456 AIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQ 515
Query: 375 GWVLFHH------------------------------------IRKHGIEPRHQHYARVV 398
VLF + +HGI P HYA +V
Sbjct: 516 AIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMV 575
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLLARAG A +FI MP+ V +LL+A ++
Sbjct: 576 DLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRV 612
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 148/426 (34%), Gaps = 145/426 (34%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAE----EAVKLF 157
G+ +H +K GL + + L N ++S YA+ G EA +LF
Sbjct: 44 GRAIHAHAVKAGLLVSAYLC----------------NNLLSYYARAGVGRGCFHEARRLF 87
Query: 158 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
+ Y R N L+ MYAK G + A + F + ++D V + M+VG
Sbjct: 88 DD-IPYA------RRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNR 140
Query: 218 --HEWSAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL----- 265
W A +F +GL ++ C+ E G+ VH F+IKLGL
Sbjct: 141 AGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAAT-EARGIGRKVHSFVIKLGLSSCVP 199
Query: 266 -----------------------------ELESDLLISL--------TAVCRY----QPN 284
E + ++SL A+ + + +
Sbjct: 200 VANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERS 259
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFP-------------------------------KWMD 313
+ WNA+I+GY +NG + A+K F K M
Sbjct: 260 IVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMH 319
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--------------------- 352
YI ++ + + LI YAK GSV+ A D+ +
Sbjct: 320 SYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGD 379
Query: 353 ------------DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
++DV+ +AM VGY +G +E LF + + G EP A V+
Sbjct: 380 TKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSA 439
Query: 401 LARAGY 406
A Y
Sbjct: 440 CASLAY 445
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 147/349 (42%), Gaps = 86/349 (24%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA---FGSF 226
+ ++ T L+++Y C S+ A + FDR ++ + + +I GY G +E + + F
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMF 168
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR--- 280
D L + + L L +E G+ +H +++ G E + LI + A C
Sbjct: 169 DYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVG 228
Query: 281 ---------YQPNVTLWNAMISGYAKNGYAEEAVKL------------------------ 307
+ LWN+M++ Y++NG+ + + L
Sbjct: 229 SAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASA 288
Query: 308 ----FPKWMDYY--IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
P+ + + + E+ ++ V T L+DMYAKCGSV +A F+R K VV +A
Sbjct: 289 DNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNA 348
Query: 362 MTVGYGLHG----------------------------------LGEEGWVLFHH-IRKHG 386
M GY +HG L EEGW+ F IR +
Sbjct: 349 MITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYK 408
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I+P QHY +VDLL +G + A+ IM M + V ALL++ KI
Sbjct: 409 IDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKI 457
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 45/205 (21%)
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY----- 281
L+ + Y + L + ++ GK +H + G ++ + L++L VC
Sbjct: 71 LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY-------------------- 314
+ N+ LWN +I GYA NG E AV+L+ + DY
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190
Query: 315 ----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
++ ++ + +V V LIDMYAKCG V A FD+ L +D V+ ++M
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEP 389
Y +G + L + G+ P
Sbjct: 251 AYSQNGHPDACLSLCSEMVLTGLRP 275
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 110/276 (39%), Gaps = 73/276 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF--------------LVC-------YLFDGLFDRT 54
+L++C+A ++ G ++H Q+ GF VC LFD +
Sbjct: 81 LLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHN 140
Query: 55 IVFLDLY---HLWSRTEWSA----FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 107
I ++ + W+ +A + FD L + + L L +E G+ +H
Sbjct: 141 IFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHE 200
Query: 108 FMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGYAKNGYAEE 152
+++ G E + LI + A C + L N+M++ Y++NG+ +
Sbjct: 201 HVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDA 260
Query: 153 AVKL----------------------------FPKWMDYY--IGKSEYRNNVIVNTVLID 182
+ L P+ + + + E+ ++ V T L+D
Sbjct: 261 CLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVD 320
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
MYAKCGSV +A F+R K VV +AMI GY +H
Sbjct: 321 MYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMH 356
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 163/427 (38%), Gaps = 110/427 (25%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIK-------------LGLELESDLLISLTAVCRYQP--NV 134
L L F ++G VHGF+IK +GL L+ L V P +
Sbjct: 100 LKACSRLGFAKEGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDS 159
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
N+MI GY K G E A +LF + E RN + N+++ + V++A
Sbjct: 160 VSYNSMIDGYVKCGLVESAGELFD------LMPREKRNLITWNSMIGGYAQRADGVNVAS 213
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
FD +KD++ ++MI GY H A G FD + + + +D L + Q
Sbjct: 214 KLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQ 273
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW- 311
K + M +V +N+M+SG+ +N Y EA+++F
Sbjct: 274 AKTLFDQM--------------------PHRDVVAYNSMMSGFVQNRYHIEALEVFNHME 313
Query: 312 ------------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
M YI + + + + LIDMY+KCGS+
Sbjct: 314 KESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSI 373
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
A F+ K + +AM G +HGLGE + + I
Sbjct: 374 QHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNAC 433
Query: 383 -----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
RKH IEPR QHY +VD+LAR+G A I MPIE +
Sbjct: 434 SHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPNDVI 493
Query: 426 RRALLSA 432
R L+A
Sbjct: 494 WRTFLNA 500
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 161/407 (39%), Gaps = 93/407 (22%)
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
+S LL + Y+PN N IS K+ EA K+ K + K Y ++ V
Sbjct: 188 DSLLLFCQMRIMGYRPN----NFTISAALKSCNGLEAFKV-GKSVHGCALKVCYDRDLYV 242
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF-----DGL 229
L+++Y K G + A FF+ D++ S MI Y + S A F +
Sbjct: 243 GIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSV 302
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC------- 279
+ + + L L L G +H ++K+GL+ S+ L+ + A C
Sbjct: 303 VVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSV 362
Query: 280 -----RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-------------- 320
+ N WN +I GY + G E+A+ LF + I +E
Sbjct: 363 KLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLV 422
Query: 321 ----------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
Y + +V LIDMYAKCG +D A + FD+ +D V +A+
Sbjct: 423 ALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALIC 482
Query: 365 GYGLHGLGEEGWVLFHHIRK------------------------------------HGIE 388
GY +HGLG E LF +++ +GIE
Sbjct: 483 GYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIE 542
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P +HY +V LL R+G + A K I +P + + V RALL A I
Sbjct: 543 PCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVI 589
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 56/289 (19%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---LHEW 220
Y+ K ++ + V T LID Y+ CG+VD A FD KD+V + M+ Y HE
Sbjct: 129 YVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHED 188
Query: 221 S--AFGSFDGLLSNEENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
S F + N +A SC+ LE + GK VHG +K+ + DL + +
Sbjct: 189 SLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVC--YDRDLYVGIAL 246
Query: 278 VCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW--------- 311
+ Y + ++ W+ MIS YA++ ++EA++LF +
Sbjct: 247 LELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPN 306
Query: 312 ----------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ + K +NV V+ L+D+YAKCG ++ + F
Sbjct: 307 NFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFT 366
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+ +K+ V + + VGY G GE+ LF ++ I+P Y+ V+
Sbjct: 367 GSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVL 415
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 129/318 (40%), Gaps = 55/318 (17%)
Query: 2 QVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
Q + V PN T VL+AC +L L +G ++H + +G D + +D+Y
Sbjct: 299 QSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL------DSNVFVSNALMDVY 352
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
E ++ F G S E+NE ++ + K ++ F LGL++
Sbjct: 353 AKCGEIE-NSVKLFTG--STEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDI----- 404
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP-KWMDYYIGKSEYRNNVIVNTVL 180
QP ++++ A V L P + + K+ Y + +V L
Sbjct: 405 ---------QPTEVTYSSVLRASA------SLVALEPGRQIHSLTIKTMYNKDSVVANSL 449
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLS-----NE 233
IDMYAKCG +D A + FD+ +D V +A+I GY +H A FD + N+
Sbjct: 450 IDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNK 509
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIK-----------------LGLELESDLLISLT 276
G CS + L++G+ M++ LG + D + L
Sbjct: 510 LTFVGVLSACS-NAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLI 568
Query: 277 AVCRYQPNVTLWNAMISG 294
+QP+V +W A++
Sbjct: 569 GEIPFQPSVMVWRALLGA 586
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 135/332 (40%), Gaps = 99/332 (29%)
Query: 197 FDRTLDKDVVMRSAMIVGYGLHE------------WSAFGSFDGLLSNEENEYGTALDCS 244
FD L++D V + +I+G H+ W DG + + T L
Sbjct: 127 FDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWR-----DGFMPDTFT-LSTVLPIF 180
Query: 245 CDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLWN 289
+ +++G +VHG+ IK G + + LI + A C + LWN
Sbjct: 181 AECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWN 240
Query: 290 AMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKS 319
+M++GYA+NG EEA+ +F K + Y+ ++
Sbjct: 241 SMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRA 300
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+ +N+ +++ LIDMY KCG+VD+A F+ D+V +AM +GY LHG E +VLF
Sbjct: 301 RFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLF 360
Query: 380 HHIRKHGIEPRH------------------------------------QHYARVVDLLAR 403
+ ++P H +H A + D L R
Sbjct: 361 ERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGR 420
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
AG + A+ FI M I+ SV LL A ++
Sbjct: 421 AGDLDEAYNFISEMKIKPTSSVWSTLLRACRV 452
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLRNAMISG 143
+++G +VHG+ IK G + + LI + A C + L N+M++G
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 245
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
YA+NG EEA+ +F K + Y+ ++ + +N
Sbjct: 246 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 305
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ +++ LIDMY KCG+VD+A F+ D+V +AMI+GY LH
Sbjct: 306 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALH 350
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 125/536 (23%), Positives = 200/536 (37%), Gaps = 137/536 (25%)
Query: 6 VAPNGCTPPLVLKACVALP---SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYH 62
V P+ T V+ AC LP L+MG +VH G L ++ + L ++ L
Sbjct: 108 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTL---VAMYGKLGK 164
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
L S GSF G + + T L C E L + M+ G+E + +
Sbjct: 165 LASSK--VLLGSFGG---RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS 219
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
S+ C + + + + KNG +E N V + L+D
Sbjct: 220 SVLPACSHLEMLRTGKELHAYALKNGSLDE--------------------NSFVGSALVD 259
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--------WSAFGSFDGLLSNEE 234
MY C V FD D+ + + +AMI GY +E + GLL+N
Sbjct: 260 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 319
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP----------- 283
G C F + + +HGF++K GL+ D + T + Y
Sbjct: 320 TMAGVVPACVRSGAF-SRKEAIHGFVVKRGLD--RDRFVQNTLMDMYSRLGKIDIAMRIF 376
Query: 284 ------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 314
++ WN MI+GY + + E+A+ L K +
Sbjct: 377 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTI 436
Query: 315 ------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
Y K+ +V V + L+DMYAKCG + ++ FD+ K+V
Sbjct: 437 LPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 496
Query: 357 VMRSAMTVGYGLHGLGEE-----------------------------------GWVLFHH 381
+ + + + YG+HG G+E G +F+
Sbjct: 497 ITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYV 556
Query: 382 IR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL-RLSVRRALLSAWKI 435
++ +G+EP HYA VVDLL RAG A++ + MP + + +LL A +I
Sbjct: 557 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 612
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 92/438 (21%), Positives = 170/438 (38%), Gaps = 82/438 (18%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M V + P+ P +LKA L + +G ++H ++ G+ V D V L
Sbjct: 1 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGV--------DSVTVANTL 52
Query: 61 YHLWSRTE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+L+ + + + FD + + + + + C E E M+ +E S
Sbjct: 53 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 112
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+S+ C N+ + ++ G + Y +L N+ I+NT
Sbjct: 113 FTLVSVVTAC---SNLPMPEGLMMGKQVHAYGLRKGEL---------------NSFIINT 154
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVV----MRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
L+ MY K G + + + +D+V + S++ L E + L E
Sbjct: 155 -LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 213
Query: 235 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR-------- 280
+E+ + L LE L GK +H + +K G E+ L+ + C+
Sbjct: 214 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 273
Query: 281 ----YQPNVTLWNAMISGYAKNGYAEEAVKLF---------------------------- 308
+ + LWNAMI+GY++N + +EA+ LF
Sbjct: 274 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 333
Query: 309 ---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ + ++ K + V L+DMY++ G +D+A F + D+D+V + M G
Sbjct: 334 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 393
Query: 366 YGLHGLGEEGWVLFHHIR 383
Y E+ +L H ++
Sbjct: 394 YVFSEHHEDALLLLHKMQ 411
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 121/518 (23%), Positives = 192/518 (37%), Gaps = 136/518 (26%)
Query: 6 VAPNGCTPPLVLKACVALP---SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYH 62
V P+ T V+ AC LP L+MG +VH G L ++ + L ++ L
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTL---VAMYGKLGK 251
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
L S GSF G + + T L C E L + M+ G+E + +
Sbjct: 252 LASSK--VLLGSFGG---RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS 306
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
S+ C + + + + KNG +E N V + L+D
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDE--------------------NSFVGSALVD 346
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--------WSAFGSFDGLLSNEE 234
MY C V FD D+ + + +AMI GY +E + GLL+N
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP----------- 283
G C F + + +HGF++K GL+ D + T + Y
Sbjct: 407 TMAGVVPACVRSGAF-SRKEAIHGFVVKRGLD--RDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 284 ------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 314
++ WN MI+GY + + E+A+ L K +
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTI 523
Query: 315 ------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
Y K+ +V V + L+DMYAKCG + ++ FD+ K+V
Sbjct: 524 LPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 583
Query: 357 VMRSAMTVGYGLHGLGEE-----------------------------------GWVLFHH 381
+ + + + YG+HG G+E G +F+
Sbjct: 584 ITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYV 643
Query: 382 IR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
++ +G+EP HYA VVDLL RAG A++ + MP
Sbjct: 644 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 681
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/438 (21%), Positives = 170/438 (38%), Gaps = 82/438 (18%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M V + P+ P +LKA L + +G ++H ++ G+ V D V L
Sbjct: 88 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGV--------DSVTVANTL 139
Query: 61 YHLWSRTE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+L+ + + + FD + + + + + C E E M+ +E S
Sbjct: 140 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 199
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+S+ C N+ + ++ G + Y +L N+ I+NT
Sbjct: 200 FTLVSVVTAC---SNLPMPEGLMMGKQVHAYGLRKGEL---------------NSFIINT 241
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVV----MRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
L+ MY K G + + + +D+V + S++ L E + L E
Sbjct: 242 -LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 235 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR-------- 280
+E+ + L LE L GK +H + +K G E+ L+ + C+
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 281 ----YQPNVTLWNAMISGYAKNGYAEEAVKLF---------------------------- 308
+ + LWNAMI+GY++N + +EA+ LF
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420
Query: 309 ---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ + ++ K + V L+DMY++ G +D+A F + D+D+V + M G
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480
Query: 366 YGLHGLGEEGWVLFHHIR 383
Y E+ +L H ++
Sbjct: 481 YVFSEHHEDALLLLHKMQ 498
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 153/365 (41%), Gaps = 97/365 (26%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS-----AFGSFDGLLS 231
L++MY+K +D F+ KDVV + +I GY G++E + G+ D L
Sbjct: 146 LMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD--LK 203
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL---- 287
+ + L + + +GK +HG++I+ G++ SD+ I + V Y + +
Sbjct: 204 PDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGID--SDVYIGSSLVDMYAKSARIEDSE 261
Query: 288 -------------WNAMISGYAKNGYAEEAVKLFP------------------------- 309
WN++++GY +NG EA++LF
Sbjct: 262 RVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLA 321
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
K + Y+ + + N+ + + L+DMY+KCG++ A FDR D V +A+ +
Sbjct: 322 TLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIM 381
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------------- 391
G+ LHG G E LF +++ G++P
Sbjct: 382 GHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLN 441
Query: 392 ---QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI--PMQQWENMLQT 446
+HYA V DLL RAG A+ FI M +E SV LLS+ + ++ E + +
Sbjct: 442 QELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEK 501
Query: 447 IRGID 451
I ID
Sbjct: 502 IFTID 506
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 124/294 (42%), Gaps = 79/294 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-----LFDRTI 55
M+ + P+ P VLK+C + L G VHG I LG + C L+ G ++ + +
Sbjct: 96 MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG-MDCDLYTGNALMNMYSKLL 154
Query: 56 ---VFLDLYHLWSRTEWSAFGSF------DGLLSNE---ENEYGT------ALDCSCDL- 96
++ L R + ++ + G+ + E GT A S L
Sbjct: 155 GIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLP 214
Query: 97 ---EFLE--QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR-------------- 137
E+++ +GK +HG++I+ G++ SD+ I + V Y + +
Sbjct: 215 IFSEYVDVLKGKEIHGYVIRKGID--SDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDS 272
Query: 138 ---NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 164
N++++GY +NG EA++LF K + Y
Sbjct: 273 ISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGY 332
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ + + N+ + + L+DMY+KCG++ A FDR D V +A+I+G+ LH
Sbjct: 333 VLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALH 386
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 129/520 (24%), Positives = 206/520 (39%), Gaps = 126/520 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
P+ T P +LKACV SL+ G +VH +F +GF D V L HL+SR
Sbjct: 122 PDFYTFPPILKACV---SLVDGKKVHCCVFKMGFE---------DDVFVAASLVHLYSRY 169
Query: 68 EW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
A F + + + + C V M G+++++ + S+
Sbjct: 170 GVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASIL 229
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
VC +V NG + ++ K ++V V+ LI+MY+
Sbjct: 230 PVCAQSDDVI-----------NGV----------LIHLHVLKHGLDSDVFVSNALINMYS 268
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL-LSNEENEYGTALD 242
K G + A M FD+ +D+V +++I Y + +A F G+ L + T +
Sbjct: 269 KFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVS 328
Query: 243 CSCDLEFLEQGKI---VHGFMIKLGLELESDLLISLTAVCRY-----------------Q 282
+ L +I + GF+I+ L+ D++I V Y +
Sbjct: 329 LTSIFSQLSDQRISRSILGFVIRREW-LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPR 387
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFP-------------KWMDY-----YIG------- 317
+ WN +++GY +NG A EA+ + W+ ++G
Sbjct: 388 KDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMK 447
Query: 318 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
K+ +V V T LID+Y KCG ++ A F V +A+ G+HG
Sbjct: 448 IHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGR 507
Query: 372 GEEGWVLFH----------HI--------------------------RKHGIEPRHQHYA 395
GEE LF HI +++GI+P +HY
Sbjct: 508 GEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYG 567
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAGY A++ + NMPI+ S+ ALLSA KI
Sbjct: 568 CMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKI 607
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 121/518 (23%), Positives = 192/518 (37%), Gaps = 136/518 (26%)
Query: 6 VAPNGCTPPLVLKACVALP---SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYH 62
V P+ T V+ AC LP L+MG +VH G L ++ + L ++ L
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTL---VAMYGKLGK 251
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
L S GSF G + + T L C E L + M+ G+E + +
Sbjct: 252 LASSK--VLLGSFGG---RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS 306
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
S+ C + + + + KNG +E N V + L+D
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDE--------------------NSFVGSALVD 346
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--------WSAFGSFDGLLSNEE 234
MY C V FD D+ + + +AMI GY +E + GLL+N
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP----------- 283
G C F + + +HGF++K GL+ D + T + Y
Sbjct: 407 TMAGVVPACVRSGAF-SRKEAIHGFVVKRGLD--RDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 284 ------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 314
++ WN MI+GY + + E+A+ L K +
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTI 523
Query: 315 ------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
Y K+ +V V + L+DMYAKCG + ++ FD+ K+V
Sbjct: 524 LPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 583
Query: 357 VMRSAMTVGYGLHGLGEE-----------------------------------GWVLFHH 381
+ + + + YG+HG G+E G +F+
Sbjct: 584 ITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYV 643
Query: 382 IR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
++ +G+EP HYA VVDLL RAG A++ + MP
Sbjct: 644 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 681
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/438 (21%), Positives = 170/438 (38%), Gaps = 82/438 (18%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M V + P+ P +LKA L + +G ++H ++ G+ V D V L
Sbjct: 88 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGV--------DSVTVANTL 139
Query: 61 YHLWSRTE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+L+ + + + FD + + + + + C E E M+ +E S
Sbjct: 140 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 199
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+S+ C N+ + ++ G + Y +L N+ I+NT
Sbjct: 200 FTLVSVVTAC---SNLPMPEGLMMGKQVHAYGLRKGEL---------------NSFIINT 241
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVV----MRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
L+ MY K G + + + +D+V + S++ L E + L E
Sbjct: 242 -LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 235 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR-------- 280
+E+ + L LE L GK +H + +K G E+ L+ + C+
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 281 ----YQPNVTLWNAMISGYAKNGYAEEAVKLF---------------------------- 308
+ + LWNAMI+GY++N + +EA+ LF
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420
Query: 309 ---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ + ++ K + V L+DMY++ G +D+A F + D+D+V + M G
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480
Query: 366 YGLHGLGEEGWVLFHHIR 383
Y E+ +L H ++
Sbjct: 481 YVFSEHHEDALLLLHKMQ 498
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/458 (22%), Positives = 172/458 (37%), Gaps = 117/458 (25%)
Query: 22 ALPSLLMG------PRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
ALPSLL P G L F V DG +V Y R E A F
Sbjct: 71 ALPSLLRAIALARFPGTAGAAHGLAFRVGAEVDGFVGTALV--RAYAACGRVE-DARKVF 127
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
DG+ + +G LDC C E+ ++ M + + + ++ ++ + C + N+
Sbjct: 128 DGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLR 187
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
F K + Y+ S+ + V+ L++MYA C +++A
Sbjct: 188 ---------------------FGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEK 226
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255
++R +KD+V+ + M+ GY + GK+
Sbjct: 227 LYNRVSEKDIVLSTTMVYGYA----------------------------------KNGKV 252
Query: 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
I G+ + +V W+AMI+GYA++ EA+ LF
Sbjct: 253 EIAHSIFNGMP---------------EKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSG 297
Query: 316 IGKSEYRNNVI--VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
+ E I + LIDM++KCGS+ LA F+ K+VV +++ +HG G
Sbjct: 298 VQPDEITMLSILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGR 357
Query: 374 EGWVLFHHIRKHGI------------------------------------EPRHQHYARV 397
LF +++ GI EP H+HY +
Sbjct: 358 SALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCM 417
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VDLL RA A I +M + + + +LL+A ++
Sbjct: 418 VDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRM 455
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 123/524 (23%), Positives = 201/524 (38%), Gaps = 119/524 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ + ++P+ T +L AC +L L G ++H +F G Y+ +G LDL
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEG------SLLDL 288
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
Y E + ++ N + L +L + G+I +DL
Sbjct: 289 YVKCGDVETAL------VIFNSSDRTNVVL---WNLMLVAFGQI-------------NDL 326
Query: 121 LISLTAVCRYQPNVTLRNAMI-SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
S C+ Q N + + L + + K+ + +++ V+ V
Sbjct: 327 AKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSV-KTGFESDMYVSGV 385
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLS----NE 233
LIDMY+K G ++ A + +KDVV ++MI GY HE A +F + +
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC----------- 279
+A+ + + QG +H + G + + L++L A C
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505
Query: 280 --RYQPNVTLWNAMISGYAKNGYAEEAVKLF----------------------------- 308
++ +T WN ++SG+A++G EEA+K+F
Sbjct: 506 EIEHKDEIT-WNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564
Query: 309 -PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
K + + K+ + V LI +Y KCGS + A M F +++ V + +
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCS 624
Query: 368 LHGLGEEGWVLFHHIRK------------------------------------HGIEPRH 391
HG G E LF ++K +GI PR
Sbjct: 625 QHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA V+D+ RAG + A KFI MPI V R LLSA K+
Sbjct: 685 DHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKV 728
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 140/364 (38%), Gaps = 90/364 (24%)
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------------------- 171
AM+SGYA+NG EEA+ L+ + + + Y
Sbjct: 113 AMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKH 172
Query: 172 ---NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHEWSAF 223
+ + V +I +Y +CGS LA F +D V + +I G+G H F
Sbjct: 173 GFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIF 232
Query: 224 G--SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLTA 277
F GL S + + L L L++G +H ++ K G+ +E LL L
Sbjct: 233 EEMQFSGL-SPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLL-DLYV 290
Query: 278 VC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY- 315
C + NV LWN M+ + + ++ +LF P Y
Sbjct: 291 KCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPC 350
Query: 316 ------------IG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+G K+ + +++ V+ VLIDMY+K G ++ A + +KD
Sbjct: 351 ILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKD 410
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHA 410
VV ++M GY H ++ F ++K GI P + A + A R G HA
Sbjct: 411 VVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHA 470
Query: 411 FKFI 414
++
Sbjct: 471 RIYV 474
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 118/282 (41%), Gaps = 58/282 (20%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA 222
G +YR IV +LID+Y+K G V A F+ +D V AM+ GY GL E A
Sbjct: 72 GLGKYR---IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGE-EA 127
Query: 223 FGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL 275
G + + + + L E QG+++H K G E + +I+L
Sbjct: 128 LGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITL 187
Query: 276 TAVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK------------ 310
C ++ VT +N +ISG+A+ G+ E A+++F +
Sbjct: 188 YLRCGSFRLAERVFCDMPHRDTVT-FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246
Query: 311 ------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ Y+ K+ ++ I+ L+D+Y KCG V+ A + F+ +
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
+VV+ + M V +G + + LF ++ GI P Y
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTY 348
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 123/449 (27%), Positives = 191/449 (42%), Gaps = 97/449 (21%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSR--TEWSAF 72
+KACV L L G +HG +GL V L ++++ T SA
Sbjct: 114 FAIKACVGLGLLENGILIHGLAMK---------NGLDKDDYVAPSLVEMYAQLGTMESAQ 164
Query: 73 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGF--MIKLGLELESDLLISLTAVCRY 130
FD + +G + L++ + ++ F M GL L++ LI L C
Sbjct: 165 KVFDEIPVRNSVLWGVLMKGY--LKYSKDPEVFRLFCLMRDTGLALDALTLICLVKAC-- 220
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ +G K G V + ++D +S+Y + +IDMY KC +
Sbjct: 221 -------GNVFAG--KVGKCVHGVSIRRSFID----QSDY-----LQASIIDMYVKCRLL 262
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF-----DGLLSNEENEYGTALDC 243
D A F+ ++D++VVM + +I G+ E + AF F + +L N+ + C
Sbjct: 263 DNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSC 322
Query: 244 SCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLW 288
S L L GK VHG+MI+ G+E+++ I + A C + NV W
Sbjct: 323 S-SLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISW 381
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV-LIDMYAKCGSVDLAPMF 347
++MI+ + NG EEA+ F K KS+ NV+ N+V + + + C
Sbjct: 382 SSMINAFGINGLFEEALDCFHKM------KSQ---NVVPNSVTFVSLLSACSH------- 425
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGY 406
G +EGW F + R +G+ P +HYA +VDLL RAG
Sbjct: 426 ---------------------SGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGE 464
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A FI NMP++ S ALLSA +I
Sbjct: 465 IGEAKSFIDNMPVKPMASAWGALLSACRI 493
>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 141/338 (41%), Gaps = 86/338 (25%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDG 228
+++ V LIDMY+KC +V A F +K+++ + M+ Y L+E A
Sbjct: 282 EDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGT 341
Query: 229 LLSN--EENEYGTALDCSCDLEFLEQGKI--VHGFMIKLGLELESDLLISLT---AVCRY 281
++ E++E A FL+ K VHG +I+ G E LL S+ A C
Sbjct: 342 MVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNL 401
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
+ +V W+ MI+G+A+NG +EA+ +F
Sbjct: 402 VELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVIPNNVSIMNLMEAC 461
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
KW + + V + T +IDMY+KCG ++ + F++ K+VV S
Sbjct: 462 AVSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWS 521
Query: 361 AMTVGYGLHGLGEEGWVLFHHIR------------------------------------K 384
AM + ++GL E +LF I+ K
Sbjct: 522 AMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQK 581
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
HGIEP +HY+ +VD+L+RAG N A + I +P E+
Sbjct: 582 HGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEME 619
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 123/319 (38%), Gaps = 75/319 (23%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY--YIGKSEYRNNVIVNTVLIDMYAKC 187
+QPN++ +I + + +K++ + + YI +S + + V L+ +YA+
Sbjct: 144 FQPNISSLLLVIQAFRE-------LKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV 196
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYG------ 238
+F + ++ DVV S MI G+ G E + N E G
Sbjct: 197 HMYFAYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFL-----MFRNMVTEAGIPPDGV 251
Query: 239 ---TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------------- 281
+ L +L+ + G +VHG +I G LE DL + + + Y
Sbjct: 252 TVVSVLKACTNLKDISLGTMVHGLVIFRG--LEDDLFVGNSLIDMYSKCFNVHSAFKAFK 309
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------------ 320
+ N+ WN M+S Y N EA+ L + K E
Sbjct: 310 EIPEKNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLK 369
Query: 321 ------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
Y +N ++ +ID YAKC V+LA M FD KDVV S M G+
Sbjct: 370 CRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFAR 429
Query: 369 HGLGEEGWVLFHHIRKHGI 387
+G +E +F + + I
Sbjct: 430 NGKPDEAISVFKQMNEEVI 448
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 57/280 (20%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG--------YGLHEWSAFGSF 226
I N+ ID Y K G +D A FD T +KD V + M+ G GL W G F
Sbjct: 84 IANST-IDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLC-WFIKGRF 141
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG----LELESDLLISLTAVCRY- 281
N + + +L+ QG HG++ + G L +++ LL V Y
Sbjct: 142 AHFQPNISSLL-LVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMYF 200
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------- 312
+ +V W+ MI G+ + G E+ +F +
Sbjct: 201 AYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKAC 260
Query: 313 ----DYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
D +G + +++ V LIDMY+KC +V A F +K+++ +
Sbjct: 261 TNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWN 320
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
M Y L+ E L + + G E A V+ +
Sbjct: 321 LMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQI 360
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 134/596 (22%), Positives = 219/596 (36%), Gaps = 161/596 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGL 50
M A V P+ CT P VLK C + G VHG F LGF L Y GL
Sbjct: 128 MVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGL 187
Query: 51 FDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG--------------------TAL 90
F + D + W+ L E G + L
Sbjct: 188 FGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVL 247
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGL----ELESDLLISLTAVCRYQP------------NV 134
+ E +IVH + +K+GL + L+ + C + NV
Sbjct: 248 PVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNV 307
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMD----------------------YYIG------ 166
NA+I+ ++ G +A+ +F +D + +G
Sbjct: 308 ISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGF 367
Query: 167 --KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSA 222
K ++V ++ LIDMYAK GS +A F++ +++V +AMI + + E+ A
Sbjct: 368 SLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEA 427
Query: 223 FGSFDGLLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL 275
+ + E + L L FL GK +H +I++G L+ S+ L +
Sbjct: 428 VELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDM 487
Query: 276 TAVC------RYQPNVTL-----WNAMISGYAKNGYAEEAVKLFP--------------- 309
+ C + N+++ +N +I GY++ + E+++LF
Sbjct: 488 YSKCGCLNLAQNVFNISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFM 547
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
K + + + + ++ V L+D+Y +CG +DLA F +K
Sbjct: 548 GVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNK 607
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------- 386
DV + M +GYG+ G + LF +++ G
Sbjct: 608 DVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYF 667
Query: 387 -------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
IEP H HYA +VDLL RAG A I + I ++ ALL A +I
Sbjct: 668 KMMCDLNIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRI 723
>gi|224137486|ref|XP_002327138.1| predicted protein [Populus trichocarpa]
gi|222835453|gb|EEE73888.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 124/468 (26%), Positives = 187/468 (39%), Gaps = 132/468 (28%)
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNVTLRNAMI 141
EF+ QG+ +HGF IK G++L+S + +LT + +V N MI
Sbjct: 55 EFVFQGRSIHGFGIKTGIDLDSQVKNALTYMYAKSGDLEAAELLFEELEDKSVVSWNTMI 114
Query: 142 SGYAKNGYAEEAVKLF------------------------PKWMDYYIGKSEYRNNVIVN 177
YA NG+ E++ +F P+ + Y K+ NN V
Sbjct: 115 GAYAGNGFFNESMLVFKRMVEQKVEVNPVTIMSLLPANISPELIHCYAIKTGLINNGSVV 174
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--------LHEWSAFGSFDGL 229
T L+ +YAKCGS +LA + + K++V +A+I Y + +S D
Sbjct: 175 TSLVCLYAKCGSTELAELLYWSFPQKNLVSLTAIISSYAEKGNMDLVVECFSRMQQLDMK 234
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISL--------TAV 278
L + + L D + G +HG+ +K GL+ L S+ LIS+ A+
Sbjct: 235 L--DSVAMVSILHGITDPSHMSIGIALHGYALKNGLDTHNLVSNGLISMYFKFNDIEAAI 292
Query: 279 CRY-----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------------- 314
+ +P ++ WN++ISG + G A +A+K F + +
Sbjct: 293 SLFYEMPEKPLIS-WNSVISGCVQAGRASDAMKFFCQMKMFGLSPDTITVASLLTGCSQL 351
Query: 315 -YIGKSE------YRNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
Y+ E RNN+ V T LIDMY KCGS+ LA F + V + M
Sbjct: 352 GYLRLGERLHNYILRNNLEVEDFVGTSLIDMYTKCGSILLAERVFKSIREPCVATWNTMI 411
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEP----------------------RH---------- 391
GY +GL + +R+ G+EP +H
Sbjct: 412 SGYSWYGLEHNALNCYSKMREQGLEPDRITFLGVLAACIHGGLLHEGKKHFQIMTEEFGM 471
Query: 392 ----QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
QH A +V LL RAG A FI NM E +V ALL+A I
Sbjct: 472 VPNLQHCACMVGLLGRAGLFEEALLFIKNMESEPDSAVWGALLNACCI 519
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 75/297 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMD----------------------YYIGKSEYRNNVI 175
NA+I G ++NGY +A+++F + + + G+S + +
Sbjct: 10 NALICGCSRNGYDVDALEIFVQLLREGFSPLQTTLVGLVPSCGRREFVFQGRSIHGFGIK 69
Query: 176 --------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
V L MYAK G ++ A + F+ DK VV + MI G + + F +
Sbjct: 70 TGIDLDSQVKNALTYMYAKSGDLEAAELLFEELEDKSVVSWNTMI---GAYAGNGFFNES 126
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQG---KIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
L+ E ++ + L +++H + IK GL ++ SL +
Sbjct: 127 MLVFKRMVEQKVEVNPVTIMSLLPANISPELIHCYAIKTGLINNGSVVTSLVCL------ 180
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
YAK G E A L+ W S + N++ T +I YA+ G++DL
Sbjct: 181 ----------YAKCGSTELAELLY--W-------SFPQKNLVSLTAIISSYAEKGNMDLV 221
Query: 345 PMFFDRTLDKDVVMRSA--------------MTVGYGLHGLGEEGWVLFHHIRKHGI 387
F R D+ + S M++G LHG + + H++ +G+
Sbjct: 222 VECFSRMQQLDMKLDSVAMVSILHGITDPSHMSIGIALHGYALKNGLDTHNLVSNGL 278
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 144/354 (40%), Gaps = 88/354 (24%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFD 227
+ + + LID Y+ ++D A FD + DV + +I Y + A D
Sbjct: 48 HEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVHD 107
Query: 228 GL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR 280
+ ++ Y L ++G+++H +K G++L+ + L++ A C+
Sbjct: 108 AMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHEHAVKCGMDLDLFVGNALVAFYAKCQ 167
Query: 281 ------------YQPNVTLWNAMISGYAKNGYAEEAVKLF-------------------- 308
++ WN+M+SGY NGY ++A+ LF
Sbjct: 168 DVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTV 227
Query: 309 -PK-----------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
P W+ YI K+ + V T LI +Y+ CG V +A FDR D+ V
Sbjct: 228 LPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSV 287
Query: 357 VMRSAMTVGYGLHGLGEE-----------------------------------GWVLFHH 381
++ SA+ YG HGL +E GW LF+
Sbjct: 288 IVWSAIIRCYGTHGLAQEALALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNA 347
Query: 382 IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +G+ HYA +VDLL RAG A +FI +MPI+ ++ ALL A +I
Sbjct: 348 METYGVAKSEAHYACIVDLLGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRI 401
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 47/166 (28%)
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGY 144
++G+++H +K G++L+ + L++ A C+ ++ N+M+SGY
Sbjct: 135 KKGRVIHEHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGY 194
Query: 145 AKNGYAEEAVKLF---------------------PK-----------WMDYYIGKSEYRN 172
NGY ++A+ LF P W+ YI K+
Sbjct: 195 TVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGL 254
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ V T LI +Y+ CG V +A FDR D+ V++ SA+I YG H
Sbjct: 255 DSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTH 300
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 151/353 (42%), Gaps = 93/353 (26%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
+V V L+ MY++ G V A FD +D +AMI GY +A + D +++
Sbjct: 28 DVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGY-CQNGNAAEALD--IAD 84
Query: 233 EENEYGTALDCSCDLEFLE---------QGKIVHGFMIKLGLELE---SDLLISLTA--- 277
E G +D L GK++H ++IK GLE E S+ LI++ A
Sbjct: 85 EMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFG 144
Query: 278 -VCRYQP-------NVTLWNAMISGYAKNGYAEEAVKLF-------------PKWMDY-- 314
+ Q +V WN +I+GYA+NG A EA++++ W+
Sbjct: 145 SLGHAQKVFGLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILP 204
Query: 315 ---YIG-------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
++G K+ ++V V T LIDMY KCG +D A F + K+ V
Sbjct: 205 AYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVP 264
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIR----------------------------------- 383
+AM YG+HG GE+ LF ++
Sbjct: 265 WNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMME 324
Query: 384 -KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++GI+P +HY +VDL RAG AF FI MPI+ S ALL+A +I
Sbjct: 325 EEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRI 377
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/444 (22%), Positives = 182/444 (40%), Gaps = 130/444 (29%)
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------ 170
+ + +S+ + ++ NV NA+ISG+ NG+ EE + + K + + ++
Sbjct: 7 QMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAI 66
Query: 171 ---------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 209
+V + + L++ Y K G ++ A + F+ +DVV+ +
Sbjct: 67 KACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWN 126
Query: 210 AMIVGYGLHEWSAFGSFDGLLS-----NEENEYGTALDCSCDLEF------LEQGKIVHG 258
AM+ GY + G F+ +L N+E+ + + L L G+I+HG
Sbjct: 127 AMVNGY-----AQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHG 181
Query: 259 FMIKLGLE---LESDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEE 303
F +K+G + S+ LI + C+ + ++ WN++ S + + G +
Sbjct: 182 FAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDG 241
Query: 304 AVKLFPKWMDYYI-----------------------------------GKS-EYRNNVIV 327
++L + + I GK + ++V++
Sbjct: 242 TLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLL 301
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----- 382
+IDMYAKCGS+ A + F+R +KDV + M +GYG+HG G E +F +
Sbjct: 302 KNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQL 361
Query: 383 -------------------------------RKHGIEPRHQHYARVVDLLARAGYSNHAF 411
K+ + P +HY V+D+L RAG + A+
Sbjct: 362 KPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAY 421
Query: 412 KFIMNMPIELRLSVRRALLSAWKI 435
+ + MPIE V RALL+A ++
Sbjct: 422 ELALTMPIEANPVVWRALLAACRL 445
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 93/226 (41%), Gaps = 55/226 (24%)
Query: 183 MYAKCGSVDLA-PMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG-SFDGLLSNE---ENEY 237
MY+KC ++ A +F D T + +V +A+I G+ + + G F + NE +++
Sbjct: 1 MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-------------- 283
L+ LE KI HG + K GLEL D+ I V Y
Sbjct: 61 TFPCAIKACLDVLEIKKI-HGLLFKFGLEL--DVFIGSALVNCYLKFGLMEHAQVAFEEL 117
Query: 284 ---NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-------------------- 320
+V LWNAM++GYA+ G E ++ F + D + S
Sbjct: 118 PIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGR 177
Query: 321 ----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
Y + V V+ LIDMY KC ++ A F+ +KD+
Sbjct: 178 IIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDI 223
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 186/468 (39%), Gaps = 131/468 (27%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQPNVTLR--------------NAMISG 143
+ G +H +K G + + SL + CRY V R NAMISG
Sbjct: 166 VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISG 225
Query: 144 YAKNGYAEEAVKLFP--KWMDY------------------------YIGKSEYRNNVIVN 177
Y ++G A+EA+ L + MD Y K + + V+
Sbjct: 226 YCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS 285
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL-LSNEE 234
LID+YA+ GS+ FDR +D++ +++I Y L+E A F + LS +
Sbjct: 286 NKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQ 345
Query: 235 NEYGTALDCSCDLEFLEQ---GKIVHGFMIKLGLELES--------------DLLISLTA 277
+ T + + L L + + V GF ++ G LE L+ S A
Sbjct: 346 PDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 405
Query: 278 VCRYQPN--VTLWNAMISGYAKNGYAEEAVKLFP--------------KWMDYYIGKSE- 320
V + PN V WN +ISGYA+NG+A EA++++ W+ S+
Sbjct: 406 VFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQA 465
Query: 321 -------------YRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+N +V V T L DMY KCG +D A F + + V + +
Sbjct: 466 GALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLI 525
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------------------- 391
+G HG GE+ +LF + G++P H
Sbjct: 526 ACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGI 585
Query: 392 ----QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDL RAG A FI +MP++ S+ ALLSA ++
Sbjct: 586 TPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRV 633
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 116/280 (41%), Gaps = 47/280 (16%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSF 226
NV ++ L+++Y G+V LA FD ++DV + MI GYG +S+ F F
Sbjct: 84 QNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLF 143
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQPNV 285
L S + +Y T + G +H +K G + + SL + CRY V
Sbjct: 144 -MLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVV 202
Query: 286 TL--------------WNAMISGYAKNGYAEEAVKLFP--KWMD---------------- 313
WNAMISGY ++G A+EA+ L + MD
Sbjct: 203 NARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGD 262
Query: 314 --------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
Y K + + V+ LID+YA+ GS+ FDR +D++ +++
Sbjct: 263 FNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKA 322
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
Y L+ +LF +R I+P + +L++ G
Sbjct: 323 YELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLG 362
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 129/520 (24%), Positives = 205/520 (39%), Gaps = 126/520 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
P+ T P +LKACV SL+ G +VH +F +GF D V L HL+SR
Sbjct: 122 PDFYTFPPILKACV---SLVDGKKVHCCVFKMGFE---------DDVFVAASLVHLYSRY 169
Query: 68 EW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
A F + + + + C V M G+++++ + S+
Sbjct: 170 GVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASIL 229
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
VC +V NG + ++ K ++V V+ LI+MY+
Sbjct: 230 PVCAQSDDVI-----------NGV----------LIHLHVLKHGLDSDVFVSNALINMYS 268
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL-LSNEENEYGTALD 242
K G + A M FD+ +D+V +++I Y + +A F G+ L + T +
Sbjct: 269 KFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVS 328
Query: 243 CSCDLEFLEQGKI---VHGFMIKLGLELESDLLISLTAVCRY-----------------Q 282
+ L +I + GF+I+ L+ D++I V Y +
Sbjct: 329 LTSIFSQLSDQRISRSILGFVIRREW-LDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPR 387
Query: 283 PNVTLWNAMISGYAKNGYAEEA--------------------VKLFPKW----------- 311
+ WN +++GY +NG A EA V + P +
Sbjct: 388 KDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMK 447
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ + K+ +V V T LID+Y KCG ++ A F V +A+ G+HG
Sbjct: 448 IHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGR 507
Query: 372 GEEGWVLFH----------HI--------------------------RKHGIEPRHQHYA 395
GEE LF HI +++GI+P +HY
Sbjct: 508 GEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYG 567
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAGY A++ + NMPI+ S+ ALLSA KI
Sbjct: 568 CMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKI 607
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 135/327 (41%), Gaps = 89/327 (27%)
Query: 197 FDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-----DGLLSNEENEYGTALDCSCDLEF 249
FD L++D V + +I+G H+ A DG + + T L +
Sbjct: 444 FDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFT-LSTVLPIFAECAD 502
Query: 250 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLWNAMISG 294
+++G +VHG+ IK G + + LI + A C + LWN+M++G
Sbjct: 503 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 562
Query: 295 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 324
YA+NG EEA+ +F K + Y+ ++ + +N
Sbjct: 563 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 622
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ +++ LIDMY KCG+VD+A F+ D+V +AM +GY LHG E +VLF +
Sbjct: 623 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMEL 682
Query: 385 HGIEPRH------------------------------------QHYARVVDLLARAGYSN 408
++P H +H A + D L RAG +
Sbjct: 683 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 742
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKI 435
A+ FI M I+ SV LL A ++
Sbjct: 743 EAYNFISEMKIKPTSSVWSTLLRACRV 769
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLRNAMISG 143
+++G +VHG+ IK G + + LI + A C + L N+M++G
Sbjct: 503 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAG 562
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
YA+NG EEA+ +F K + Y+ ++ + +N
Sbjct: 563 YAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDN 622
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ +++ LIDMY KCG+VD+A F+ D+V +AMI+GY LH
Sbjct: 623 IFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALH 667
>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 129/533 (24%), Positives = 216/533 (40%), Gaps = 162/533 (30%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFD--------- 52
T ++L+AC + +++G ++HG + GF + Y G FD
Sbjct: 12 TCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNGV 71
Query: 53 -----RTIVFLDLYHLWSRTEWSAFGSFDGLLSN--EENEYG-TALDCSCDLEFLEQGKI 104
R + + L + + E A G F L+S + N+Y T + +C++E +GK
Sbjct: 72 GCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCNVE---EGKQ 128
Query: 105 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164
+HG +K G+ L++ ++ NA+I+ Y KNG EEA ++F
Sbjct: 129 LHGLAVKYGVLLQT----------------SVGNAVITMYGKNGMVEEAARMFSVM---- 168
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
+ N+I T LI Y + G + ++ +D + +R G G+ S
Sbjct: 169 -----NKKNLISWTALISGYTRNG-------YGEKAVDGFLELR-----GCGVECDS--- 208
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR- 280
GLL+ T LD + + L+ G +HG +IKLG + ++ LI L A C+
Sbjct: 209 ---GLLA-------TILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKN 258
Query: 281 YQPNVTLWN-----------AMISGYAKNGYAEEAVKLF----------PKWMDY----- 314
+Q T++N A++ G+ +N EE +F P + +
Sbjct: 259 FQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLS 318
Query: 315 ----------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
Y K+ + ++ V+ LI MYAKCG V+ A F+ D +
Sbjct: 319 LSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCIS 378
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIR----------------------------------- 383
+A+ Y LHG GE+ +L+ +
Sbjct: 379 WNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACTYSGLSEDGLHLFNTME 438
Query: 384 -KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K+GI+P +HYA +VDLL RAGY + A I P + R L++ K+
Sbjct: 439 SKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTLLWRTLVNVCKL 491
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 123/312 (39%), Gaps = 63/312 (20%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR-----------YQPN 133
T LD + + L+ G +HG +IKLG + ++ LI L A C+ P
Sbjct: 213 TILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPR 272
Query: 134 VTLR-NAMISGYAKNGYAEEAVKLF----------PKWMDY------------------- 163
T NA++ G+ +N EE +F P + +
Sbjct: 273 STASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGL 332
Query: 164 --YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
Y K+ + ++ V+ LI MYAKCG V+ A F+ D + +A+I Y LH
Sbjct: 333 HAYSIKTGFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLH--- 389
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G LL E E G D L L+ + + + GL L ++ +
Sbjct: 390 GQGEKALLLYQEMEEKGFTPDEITILVILQ--ACTYSGLSEDGLH----LFNTMESKYGI 443
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
QP + + M+ + GY +A+ + I +S + + ++ L+++ CG +
Sbjct: 444 QPLLEHYACMVDLLGRAGYLSQAMDI--------INRSPFSESTLLWRTLVNVCKLCGDL 495
Query: 342 DLAPMFFDRTLD 353
+L + LD
Sbjct: 496 NLGKLASKHLLD 507
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 117/489 (23%), Positives = 183/489 (37%), Gaps = 148/489 (30%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL------------TAVCRYQP----N 133
L D + L +GK +H MI G + SL + Y P N
Sbjct: 18 LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWM------DYYIGKSEYRN--------------- 172
V NA+ISG+ NG A + + + K D Y R
Sbjct: 78 VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLL 137
Query: 173 ------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
+V V + L++ Y K GS++ A F +DVV+ +AMI GY + G
Sbjct: 138 KMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGY-----AKIGCL 192
Query: 227 DGLLS--NEENEYGTA---------LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLL 272
D L + G A L L+ GK VHG ++K+G + S+ L
Sbjct: 193 DEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNAL 252
Query: 273 ISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI---- 316
I + C++ + ++ WN++IS + + G + ++LF K + I
Sbjct: 253 IDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDL 312
Query: 317 -------------------------------GKSEYR---NNVIVNTVLIDMYAKCGSVD 342
GK + +N++V+ ++DMYAKCGS++
Sbjct: 313 VTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMN 372
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-------------------- 382
A FD KDV + M +GYG+HG E +F +
Sbjct: 373 NALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACN 432
Query: 383 ----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
G+ P +HY V+D+L RAG+ A++ + MPI+ V
Sbjct: 433 HAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVW 492
Query: 427 RALLSAWKI 435
RALL A ++
Sbjct: 493 RALLGACRL 501
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 145/357 (40%), Gaps = 94/357 (26%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
Y + + + L++ Y CG + A FD KDVV +A+I GY +FG F
Sbjct: 136 YELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFK 195
Query: 228 GLLS------NEENEYGTALDCSCDLEFLEQGKIVHGFMIK-----LGLELESDLLISLT 276
++ NE G + C + + L+ G+ +HG+M+K G++LE+ L I+L
Sbjct: 196 EMVEVKEVRPNEGTMMGLIVAC-IESKNLKLGRAIHGYMMKDMVLREGVKLEAAL-INLY 253
Query: 277 AVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK-------------- 310
C Y + N +WN++I GY + G E ++L +
Sbjct: 254 VKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVS 313
Query: 311 ----------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
W+ + K + V + T LIDMYAKCG + A FD+ ++
Sbjct: 314 GVLSACAQMGAFNLGNWVHRFAEKKGIWD-VFIGTALIDMYAKCGFIGAARKVFDQMNER 372
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------- 386
+V +A+ GY HG E LF +R+ G
Sbjct: 373 NVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYF 432
Query: 387 --------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I PR +HY +VDLL RAG A + I M +E + V ALLSA I
Sbjct: 433 DLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSI 489
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 105/467 (22%), Positives = 172/467 (36%), Gaps = 121/467 (25%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE-------------LESDLLISLT 125
+ + Y A+D L +G+ +H ++ +GL E L +
Sbjct: 23 FQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNAR 82
Query: 126 AVCRYQPNVTLRN--AMISGYAKNGYAEEAVKLFPKW----------------------- 160
+ PN +R + A+ G+ EEA+ F +
Sbjct: 83 KLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLS 142
Query: 161 -------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
M I K+ + ++ + + LI MY+KCG V+ A FD +DKD+V+ +AM+
Sbjct: 143 DRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVS 202
Query: 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
GY H G + N + ++ GF + S++
Sbjct: 203 GYAQH---------GFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFR 253
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------ 321
+TA +P+V W ++ISG+ +N + E F + +D S
Sbjct: 254 LMTA-NGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNV 312
Query: 322 ------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+V V + L+DMYAKCG + A + F +++ V +++
Sbjct: 313 ANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLI 372
Query: 364 VGYGLHGLGEEGWVLFHHIR------------------------------------KHGI 387
GY HG E LF+ + K+ I
Sbjct: 373 FGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRI 432
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
EPR +HYA +VDLL RAG + A+ I MP+E V ALL A +
Sbjct: 433 EPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACR 479
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 145/350 (41%), Gaps = 46/350 (13%)
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV- 179
LI+ V R N++ S + + YA+ A+ ++ + Y G++ + + VI+
Sbjct: 4 LINRANVYRVYRNISTHRTFQS--SSDTYAK-AIDMYARDRALYRGRALHAHLVIIGLAR 60
Query: 180 -------LIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMIVGYGLHE--WSAFGSF- 226
L+ Y +CG + A FD+ + ++ ++ + G +E SAF
Sbjct: 61 LTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQ 120
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT--------- 276
+GL N + + L L G+ +H ++K E ++ ++ +L
Sbjct: 121 KEGLRPN-QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHV 179
Query: 277 -AVCR-----YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330
CR ++ + NAM+SGYA++G+ EA+ L K + ++ + NV+
Sbjct: 180 EKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQK-----MQQAGVKPNVVSWNT 234
Query: 331 LIDMYAKCGSVDLAPMFFD----RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
LI +++ G + F ++ DVV +++ G+ + EG+ F + G
Sbjct: 235 LIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQG 294
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFK---FIMNMPIELRLSVRRALLSAW 433
P + ++ H + + M + +E + VR AL+ +
Sbjct: 295 FCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMY 344
>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
Length = 828
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 139/604 (23%), Positives = 238/604 (39%), Gaps = 170/604 (28%)
Query: 14 PLVLKACVALPSLLMGPRVHGQIFSLGFL---------------VCYLFDG--LFDRTIV 56
P V++A + L++G ++HG+I GF +C+L D +FD V
Sbjct: 106 PSVIRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCV 165
Query: 57 FLDLYHLWS------------RTEWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQG 102
DL LWS R F S +G+ + A C + L
Sbjct: 166 -RDLV-LWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACG-KIGCLRLA 222
Query: 103 KIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLRNAMISGYAKN 147
K VHG++++ G+ + L LI + + C Y + + +MIS Y +N
Sbjct: 223 KSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQN 282
Query: 148 GYAEEAVKLFPKWMDYYI----------------------GKSEY----RNNVIVNTV-- 179
EEA+ +F K D + GKS + RN + V +
Sbjct: 283 ECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDL 342
Query: 180 ---LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSN- 232
LID Y+ C + ++++V + +I Y GL++ A F +++
Sbjct: 343 GPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLND-EAMAFFACMVAKG 401
Query: 233 ---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVCRY------ 281
+ +++ S ++ G+ +HG ++K G E + L+ + + C +
Sbjct: 402 IMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFDEFVQNSLMDMYSKCGFASSAYT 461
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------------- 309
++ WN MI G+++NG + EA+ LF
Sbjct: 462 IFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGY 521
Query: 310 ----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
KW+ + I + +N++ ++T L+DMYAKCG + A FD ++K VV S M
Sbjct: 522 LDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAA 581
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEP------------RH---------------------- 391
+G+HG LFH + I+P RH
Sbjct: 582 HGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVP 641
Query: 392 --QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI--PMQQWENMLQTI 447
+H+A +VDLL+RAG N A++ I ++ + S+ ALL+ +I M E + + +
Sbjct: 642 NVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMDMIEYIAEEL 701
Query: 448 RGID 451
GI
Sbjct: 702 GGIS 705
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 165/388 (42%), Gaps = 106/388 (27%)
Query: 153 AVKLFPKWMDYYIGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
A+K +D + GK Y++++ V++ LI MY+ CG ++ A FD ++
Sbjct: 82 AIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRN 141
Query: 205 VVMRSAMIVGYGLH--EWSAFGSFDGLLSNEENEYGT---------ALDCSCDLEFLEQG 253
+V ++MI GY L+ A F LL E ++ T ++ +C +G
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACS-RVAAKG 200
Query: 254 --KIVHGFMIKLGLELESDLLISL-----------TAVCR------YQPNVTLWNAMISG 294
+ +H F+IK G + + +L AV R + +N+++S
Sbjct: 201 LTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSV 260
Query: 295 YAKNGYAEEAVKLFPKWMD-----------------------YYIGKSEY--------RN 323
YA++G + EA +F + + IGK + +
Sbjct: 261 YAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG------------- 370
+VIV T +IDMY KCG V+ A + FDR +K+V +AM GYG+HG
Sbjct: 321 DVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380
Query: 371 ----------------------LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYS 407
L + GW F+ ++ + G+EP +HY +VDLL RAG+
Sbjct: 381 DSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFL 440
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
A+ I M +E + +LL+A +I
Sbjct: 441 QKAYDLIQKMKMEPDSIIWSSLLAACRI 468
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 30/128 (23%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGKS 319
+ +V WN++I+ A++G + EA++ F +D + GK
Sbjct: 38 KTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQ 97
Query: 320 E--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
Y++++ V++ LI MY+ CG ++ A FD +++V ++M GY L+G
Sbjct: 98 THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGN 157
Query: 372 GEEGWVLF 379
+ LF
Sbjct: 158 ALDAVSLF 165
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 59/210 (28%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAMI 141
L GK +H +I++GLE D+++ + + Y NV AMI
Sbjct: 303 LRIGKCIHDQVIRMGLE--DDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMI 360
Query: 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201
+GY +G+A +A++LFP +D S R N I + + A C
Sbjct: 361 AGYGMHGHAAKALELFPAMID-----SGVRPNYI---TFVSVLAACSHA----------- 401
Query: 202 DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEE--NEYGTALDCSCDLEFLEQGKIVH 257
GLH+ W F + G E YG +D FL++ +
Sbjct: 402 --------------GLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---Y 444
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTL 287
+ K+ +E +S + SL A CR NV L
Sbjct: 445 DLIQKMKMEPDSIIWSSLLAACRIHKNVEL 474
>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
Length = 751
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 128/567 (22%), Positives = 220/567 (38%), Gaps = 151/567 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------- 41
MQ + P+ P VLKAC L + +G VHG + S G+
Sbjct: 104 MQENGLLPDNFVLPNVLKACGGLEWIRIGKVVHG-LVSCGYVWKMWGGGGCKKGVCGMPQ 162
Query: 42 ---------LVCYLFDGLFDRTI-VFLDLYHLWSRTEWSAFGSFDGLLSN----EENEYG 87
+V Y+ +GL + I VF ++ SF +N ++ + G
Sbjct: 163 RNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQG 222
Query: 88 TALDCSCDLEFLEQ-GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK 146
A+ C +E G + F K+GL +++ + S + +V N +ISGY +
Sbjct: 223 HAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRM----LEKDVVTWNLLISGYVQ 278
Query: 147 NGYAEEAVKL----------------------FPKWMDYYIGKSEY----RNNV----IV 176
G ++A+ + F + +GK + RNN+ +V
Sbjct: 279 IGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVV 338
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNEE 234
+ ++DMYAKC + A F+ ++ KD+++ + M+ + H A F
Sbjct: 339 VSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLF-------- 390
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
Y L+ S + ++ GF+ + D+ + + ++ QPN+ W +ISG
Sbjct: 391 --YQMQLE-SVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSL-GVQPNLVTWTTLISG 446
Query: 295 YAKNGYAEEAVKLFPKWMD-------------------------------YYIGKSEYRN 323
A++G+ EA+ F + + Y I S Y
Sbjct: 447 LARSGFGYEAILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYL- 505
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
++ + T L+DMYAKCG D A FD DK++ + +AM G+ LHG E L+ ++
Sbjct: 506 SIPIATSLVDMYAKCGDRDQAKRVFDMIPDKELPIYNAMISGFALHGQAVEALALYRCLK 565
Query: 384 K------------------------------------HGIEPRHQHYARVVDLLARAGYS 407
+ H I P +HY +V LL+R G
Sbjct: 566 EEGLKPDNITFTNALYACSHAMMVSEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDL 625
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWK 434
+ AF I MP + + + +LL+A +
Sbjct: 626 DEAFGLISAMPYKPDVQILGSLLAACR 652
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
N + T L+ YAKC + + + F R K+V +A+I GL+ F L
Sbjct: 46 NEYIETKLVIFYAKCDNPEASNSLFRRVRLKNVFSWAAVI---GLNCRKGFYQEALLGFK 102
Query: 233 EENEYG---------TALDCSCDLEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVCRY 281
E E G L LE++ GK+VHG ++ G ++
Sbjct: 103 EMQENGLLPDNFVLPNVLKACGGLEWIRIGKVVHG-LVSCGYVWKMWGGGGCKKGVCGMP 161
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKS 319
Q N WN+MI GY +NG EEA+++F + + + GK
Sbjct: 162 QRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQ 221
Query: 320 EYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ VI + + LI+ Y+K G ++ A F R L+KDVV + + GY G
Sbjct: 222 GHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGE 281
Query: 372 GEEGWVLFHHIR 383
++ + H +R
Sbjct: 282 VDKALNMCHLMR 293
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 182/472 (38%), Gaps = 137/472 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR-----------------NAMI 141
LE+GK VH + ++LG+ SD++++ V Y L+ +A +
Sbjct: 344 LEKGKEVHNYALQLGMT--SDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFL 401
Query: 142 SGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYR 171
S + GY EA+ +F K M Y+ K++
Sbjct: 402 SALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMG 461
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGL 229
+++ V T L+ MY +C S A F+R KDVV + +I G+ A F L
Sbjct: 462 SDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRL 521
Query: 230 -LSNEENEYGT--ALDCSCDL-EFLEQGKIVHGFMIKLGLELESDL---LISLTAVC--- 279
LS + + GT +L +C L + L G HG +IK G+E E + LI + A C
Sbjct: 522 QLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSL 581
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY----- 315
++ + WN MI+GY NG A EA+ F P + +
Sbjct: 582 CTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPA 641
Query: 316 ----------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
I + + ++ ++ LIDMYAK G + + F +K +
Sbjct: 642 VSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISW 701
Query: 360 SAMTVGYGLHGLGEEGWVLFH-----HI-------------------------------R 383
+AM GY +HG GE LF H+
Sbjct: 702 NAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTE 761
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
KH +EP +HYA +VDLL AG + I MP E V ALL A K+
Sbjct: 762 KHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKM 813
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 113/269 (42%), Gaps = 57/269 (21%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL----- 229
+V+ LIDMY+KCG V LA FD+ KD + + M+ GY +H F L
Sbjct: 263 VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGY-VHHGCYFEVLQLLDEMKR 321
Query: 230 --LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP---- 283
+ + ++ + + LE+GK VH + ++LG + SD++++ V Y
Sbjct: 322 KHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLG--MTSDIVVATPIVSMYAKCGEL 379
Query: 284 -------------NVTLWNAMISGYAKNGYAEEAVKLFP--------------------- 309
++ +W+A +S + GY EA+ +F
Sbjct: 380 KKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSAC 439
Query: 310 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
K M Y+ K++ +++ V T L+ MY +C S A F+R KDVV +
Sbjct: 440 AEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWN 499
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ G+ G +F ++ G++P
Sbjct: 500 TLINGFTKCGDPRLALEMFLRLQLSGVQP 528
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 135/339 (39%), Gaps = 80/339 (23%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW----------------------MDYY---- 164
P++ L N++I Y++ +EA+K + +D++
Sbjct: 89 NPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVA 148
Query: 165 ----IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--H 218
I E +V + T L+DMY K G +D A FD+ KDV +AMI G +
Sbjct: 149 IHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSN 208
Query: 219 EWSAFGSFDGLLSNE--ENEYGTALDCS---CDLEFLEQGKIVHGFMIKLGL-ELESDLL 272
A F + E E + + L+ + LE ++ K +HG++++ + + S+ L
Sbjct: 209 PCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVSNSL 268
Query: 273 ISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI---- 316
I + + C + + W M++GY +G E ++L + +I
Sbjct: 269 IDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNK 328
Query: 317 --------GKSEYRN------------------NVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+E R+ +++V T ++ MYAKCG + A FF
Sbjct: 329 ISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLS 388
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+D+V+ SA G E +F ++ G++P
Sbjct: 389 LEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKP 427
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/467 (22%), Positives = 172/467 (36%), Gaps = 121/467 (25%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE-------------LESDLLISLT 125
+ + Y A+D L +G+ +H ++ +GL E L +
Sbjct: 799 FQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNAR 858
Query: 126 AVCRYQPNVTLRN--AMISGYAKNGYAEEAVKLFPKW----------------------- 160
+ PN +R + A+ G+ EEA+ F +
Sbjct: 859 KLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLS 918
Query: 161 -------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
M I K+ + ++ + + LI MY+KCG V+ A FD +DKD+V+ +AM+
Sbjct: 919 DRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVS 978
Query: 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
GY H G + B + ++ GF + S++
Sbjct: 979 GYAQH---------GFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFR 1029
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------ 321
+TA +P+V W ++ISG+ +N + E F + +D S
Sbjct: 1030 LMTAN-GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNV 1088
Query: 322 ------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+V V + L+DMYAKCG + A + F +++ V +++
Sbjct: 1089 ANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLI 1148
Query: 364 VGYGLHGLGEEGWVLFHHIR------------------------------------KHGI 387
GY HG E LF+ + K+ I
Sbjct: 1149 FGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRI 1208
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
EPR +HYA +VDLL RAG + A+ I MP+E V ALL A +
Sbjct: 1209 EPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACR 1255
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 109/502 (21%), Positives = 195/502 (38%), Gaps = 153/502 (30%)
Query: 99 LEQGKIVHGFMIKLGL---ELESDLLISLTAVCR--------YQPNVTLR----NAMISG 143
+E G+ H F++K+GL E LI + A C Y +L N +IS
Sbjct: 129 VELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISA 188
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
YA+NG+ +A ++F K + ++ K +Y +
Sbjct: 189 YARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSE 248
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN- 232
V L+ +Y+KCG ++ A + F+ ++++ +A I G+ H G F L
Sbjct: 249 TAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQH-----GDFKKALKQF 303
Query: 233 --------EENEYGTAL---DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
E NE+ ++ C C +F++ G++ H +IK G+ S + + + Y
Sbjct: 304 SMMRESGIEPNEFTFSIVLASCGCVKDFID-GRMFHTQVIKKGMA--SGVFVGTAIIDMY 360
Query: 282 Q-------------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG----- 317
NV+ WNA+I+GY N E+A++ F + + +
Sbjct: 361 SGLGEMDEAEKQFKQMGRAASNVS-WNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFT 419
Query: 318 -------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KS +N+ V + LI+ Y +CGS++ A F +
Sbjct: 420 YSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQIS 479
Query: 353 DKDVVMRSAMTVGYGLHG-----------------------------------LGEEGWV 377
D DVV +++ Y +G L +EG
Sbjct: 480 DADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQE 539
Query: 378 LFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA--WK 434
F ++ + I+P H + +VD+L RAG +A FI + ++ S+ R LL+A +
Sbjct: 540 FFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYN 599
Query: 435 IPMQQWENMLQTIRGIDEGEKT 456
+Q E + + I ++ + T
Sbjct: 600 SNLQMAEYVAEKILDLEPNDAT 621
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 141/359 (39%), Gaps = 57/359 (15%)
Query: 151 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
E V+L +W + + K ++ V T LIDMYAKCG VD A +D+ D +
Sbjct: 126 EGCVELGRRWHCFVV-KIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNC 184
Query: 211 MIVGYGLHEW--SAFGSF--DGLLSNEENE--YGTALDCSCDLEFLEQGKIVHGFMIKLG 264
+I Y + + AF F G + N Y T L + +++GK +H ++K+
Sbjct: 185 LISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQ 244
Query: 265 LELES---DLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP 309
E+ + L++L + C Q N+ W A I+G+ ++G ++A+K F
Sbjct: 245 YLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFS 304
Query: 310 KWMDYYIGKSEYR------------------------------NNVIVNTVLIDMYAKCG 339
+ I +E+ + V V T +IDMY+ G
Sbjct: 305 MMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLG 364
Query: 340 SVDLAPMFFDRT-LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+D A F + V +A+ GY L+ E+ F + K + Y+ +
Sbjct: 365 EMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIF 424
Query: 399 DLLA---RAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGE 454
+ + ++ +E L V +L+ A+ EN +Q I + +
Sbjct: 425 KACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAY-TQCGSLENAVQVFTQISDAD 482
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 76/382 (19%), Positives = 157/382 (41%), Gaps = 49/382 (12%)
Query: 90 LDCSCDLEFLEQGKIVHGFM-IKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG 148
LDC ++++ +I ++ L LI+ V R N++ S + +
Sbjct: 750 LDCYSTMKYI--SRITDRYIPTPLAAAAAMQSLINRANVYRVYRNISTHRTFQS--SSDT 805
Query: 149 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV--------LIDMYAKCGSVDLAPMFFDRT 200
YA+ A+ ++ + Y G++ + + VI+ L+ Y +CG + A FD+
Sbjct: 806 YAK-AIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKI 864
Query: 201 LDKDV---VMRSAMIVGYGLHE--WSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQG 253
+ ++ ++ + G +E SAF +GL N + + L L G
Sbjct: 865 PNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN-QFVLPSILKACGHLSDRRTG 923
Query: 254 KIVHGFMIKLGLELESDLLISLT----------AVCR-----YQPNVTLWNAMISGYAKN 298
+ +H ++K E ++ ++ +L CR ++ + NAM+SGYA++
Sbjct: 924 ENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQH 983
Query: 299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD----RTLDK 354
G+ EA+ L K + ++ + NV+ LI +++ G + F ++
Sbjct: 984 GFVHEALBLVQK-----MQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEP 1038
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK-- 412
DVV +++ G+ + EG+ F + G P + ++ H +
Sbjct: 1039 DVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIH 1098
Query: 413 -FIMNMPIELRLSVRRALLSAW 433
+ M + +E + VR AL+ +
Sbjct: 1099 GYAMVIGVEKDVYVRSALVDMY 1120
>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 143/565 (25%), Positives = 217/565 (38%), Gaps = 160/565 (28%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLDLYHLWSR 66
P+ T P +LKAC +L L G +H Q+ GF Y+ L + F L H
Sbjct: 44 PDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKV 103
Query: 67 TE---------WSA-FGSFD--GL------LSNEENEYGTALDCSCDLEFLE------QG 102
E W+A G + G+ L NE G LE L Q
Sbjct: 104 FEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQL 163
Query: 103 KIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYAKN 147
+ +H F + G + + + +++L C + Q ++ N MISGYA
Sbjct: 164 QCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASV 223
Query: 148 GYAEEAVKLF------------------------------PKWMDYYIGKSEYRNNVIVN 177
G E +KL + + I K+ + ++ +
Sbjct: 224 GNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLK 283
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLL---S 231
T LI MY KCG + + + +KDVV + MI G G E A F +L S
Sbjct: 284 TALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAE-KALIVFSEMLQSGS 342
Query: 232 NEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------ 281
+ +E ++ SC L + G VHG++++ G L++ + LI++ A C +
Sbjct: 343 DLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLV 402
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------------- 309
+ ++ WNA+ISGYA+N +A+ LF
Sbjct: 403 IFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAG 462
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
K + + +S R +V+T L+DMY+KCG ++ A FD KDVV +
Sbjct: 463 ALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIA 522
Query: 365 GYGLHGLG-----------------------------------EEGWVLFHH-IRKHGIE 388
GYG HG G ++G +F +R G+E
Sbjct: 523 GYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVE 582
Query: 389 PRHQHYARVVDLLARAGYSNHAFKF 413
P H+H A VVDLL RA AFKF
Sbjct: 583 PNHEHLACVVDLLCRAKRIEDAFKF 607
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 118/476 (24%), Positives = 183/476 (38%), Gaps = 142/476 (29%)
Query: 99 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLRNAMISG 143
L+ + H ++ LGL S L LI A+C++ NV L N++I+G
Sbjct: 39 LKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98
Query: 144 YAKNGYAEEAVKLFPKWMD----------------------YYIGKS--------EYRNN 173
KN EA +LF + + GKS + ++
Sbjct: 99 CVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSD 158
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH----------EWSAF 223
+V ++ MY KCG+ D + FD ++ + +I GY + E+
Sbjct: 159 TVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQ 218
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK--LGLELESDLLISLTAVCRY 281
D + + C D+ + G+ +H +++K L L L+SD+ + + Y
Sbjct: 219 MQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMY 278
Query: 282 QP-----------------NVTLWNAMISGYAKNGYAEEAVKLF---------------- 308
NV W AMI+GY +NG ++EA+ LF
Sbjct: 279 SRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSL 338
Query: 309 ----PKWMDY-----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF-DRTL 352
P + + + E N V + LIDMY+KCGS+D A F D +L
Sbjct: 339 VSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSL 398
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHH------------------------------- 381
KD + S+M GYGLHG G+E +L+
Sbjct: 399 CKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLN 458
Query: 382 -----IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
I +GIEP + A +VD+L RAG + A FI +P+E SV AL+S
Sbjct: 459 IYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSC 514
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 171/454 (37%), Gaps = 157/454 (34%)
Query: 138 NAMISGYAKNGYAEEAVKLFPK------------------------------WMDYYIGK 167
N+M+SG+A++ EEA+ F + I K
Sbjct: 121 NSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAK 180
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
S ++V + + L+DMY+KCG+V+ A FD D++VV +++I Y + A
Sbjct: 181 SPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKV 240
Query: 226 FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F +L + +E + + L ++ G+ VH ++K+ +L +D+++S V Y
Sbjct: 241 FQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMD-KLRNDIILSNAFVDMY 299
Query: 282 ------------------------------------------------QPNVTLWNAMIS 293
+ NV WNA+I+
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 294 GYAKNGYAEEAVKLF----------------------PKWMDYYIG-------------- 317
GY +NG EEA+ LF D ++G
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKF 419
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
+S +++ V LIDMY KCG V+ + F + +++D V +AM +G+ +G G E
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479
Query: 378 LFH----------HI--------------------------RKHGIEPRHQHYARVVDLL 401
LF HI R G+ P HY +VDLL
Sbjct: 480 LFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLL 539
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG+ A I MP++ + +LL+A K+
Sbjct: 540 GRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKV 573
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 124/313 (39%), Gaps = 67/313 (21%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ V ++N +I YAK G E+ +LF K RN N+V+ + K G
Sbjct: 51 FSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM--------PQRNVFTWNSVVTGL-TKLGF 101
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-------WSAFGSFDGLLSNEENEYGTALD 242
+D A F ++D ++M+ G+ H+ + A +G + NE + + L
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYT-FASGLS 160
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NV 285
L + +G +H + K SD+ I V Y NV
Sbjct: 161 ACSGLNDMNRGVQIHSLIAK--SPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNV 218
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------------------ 321
WN++I+ Y +NG A EA+K+F ++ ++ E
Sbjct: 219 VSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHAR 278
Query: 322 -------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
RN++I++ +DMYAKC + A FD ++V+ ++M GY + +
Sbjct: 279 VVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKA 338
Query: 375 GWVLFHHIRKHGI 387
++F + + +
Sbjct: 339 ARLMFTKMAERNV 351
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 140/370 (37%), Gaps = 117/370 (31%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQ-----------IFSLGFLVCY---- 45
M +WV P+ T V+ AC +L ++ +G VH + I S F+ Y
Sbjct: 244 MLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCS 303
Query: 46 -------LFDGLFDRTIV----FLDLYHLWSRTE----------------WSAFGSFDGL 78
+FD + R ++ + Y + + T+ W+A G
Sbjct: 304 RIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNAL--IAGY 361
Query: 79 LSNEENEYGTALDC-------------------SC-DLEFLEQGKIVHGFMIKLGLELES 118
N ENE +L C +C DL L G H ++K G + +S
Sbjct: 362 TQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQS 421
Query: 119 ----DLLISLTAV-------CRYQPNVTLR----------NAMISGYAKNGYAEEAVKLF 157
D+ + + + C + + R NAMI G+A+NGY EA++LF
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELF 481
Query: 158 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
+ +D E +++ +I + + CG A V G
Sbjct: 482 REMLD----SGEKPDHI----TMIGVLSACG--------------------HAGFVEEGR 513
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
H +S+ + D ++ + Y +D FLE+ K + + ++ ++ +S + SL A
Sbjct: 514 HYFSSM-TRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSI---IEEMPVQPDSVIWGSLLA 569
Query: 278 VCRYQPNVTL 287
C+ N+TL
Sbjct: 570 ACKVHRNITL 579
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS + N V + LID YAKCGS++ FD+ ++V +++ G G +E
Sbjct: 48 KSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADS 107
Query: 378 LFHHI 382
LF +
Sbjct: 108 LFRSM 112
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 136/308 (44%), Gaps = 55/308 (17%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
YI N+I+ VLIDM+A CG +D A FD ++DV+ ++++ G+ +
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGF-----ANI 287
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
G D L+ + D + +++ ++ G++ ++ +E+ L + +P
Sbjct: 288 GQID--LARK------YFDQIPERDYVSWTAMIDGYL-RMNRFIEALALFREMQMSNVKP 338
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+ ++++ A G E +W+ YI K+ +N+ V LIDMY KCG+V
Sbjct: 339 DEFTMVSILTACAHLGALE-----LGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGK 393
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI--------------------- 382
A F KD +AM VG ++G GEE +F ++
Sbjct: 394 AKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTH 453
Query: 383 ---------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
+HGI+P HY +VDLL RAG A + I+NMP++ V
Sbjct: 454 AGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWG 513
Query: 428 ALLSAWKI 435
+LL A ++
Sbjct: 514 SLLGACRV 521
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 127/344 (36%), Gaps = 86/344 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTI----V 56
M+ V+PN T L+L AC L L G ++ Y+ G+ +R + V
Sbjct: 199 MEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK----------YINGGIVERNLILENV 248
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
+D++ +A G D E + D + + + IV GF ++L
Sbjct: 249 LIDMF--------AACGEMD--------EAQSVFDNMKNRDVISWTSIVTGFANIGQIDL 292
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK----------------- 159
+ + + AMI GY + EA+ LF +
Sbjct: 293 ARKYFDQIP-----ERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSIL 347
Query: 160 -------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
W+ YI K+ +N+ V LIDMY KCG+V A F KD
Sbjct: 348 TACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKF 407
Query: 207 MRSAMIVGYGL--HEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
+AMIVG + H A F + ++ +E Y L C+C H M
Sbjct: 408 TWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVL-CAC----------THAGM 456
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304
++ G IS+T +PNVT + M+ + G EEA
Sbjct: 457 VEKG----QSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEA 496
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 30/113 (26%)
Query: 285 VTLWNAMISGY----------------AKNGYAEEAVKLF------PKWMDYYIGKSEYR 322
V WN M+SGY K G + +V L K D GK Y+
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232
Query: 323 --------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
N+I+ VLIDM+A CG +D A FD ++DV+ +++ G+
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFA 285
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 146/366 (39%), Gaps = 109/366 (29%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
K + Y K+ Y+NN V T I+ S++ A FD+ ++V+ + M GY
Sbjct: 43 KQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGY 102
Query: 216 G-----LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
L + F L+S ++ L +GK +H F +KLG+ SD
Sbjct: 103 ARLNDPLRMITHFRRCLRLVSK--------------VKALAEGKQLHCFAVKLGV---SD 145
Query: 271 ------LLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP--- 309
LI++ C +P V +NA+I A+N A EA+ LF
Sbjct: 146 NMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQ 205
Query: 310 ---------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
+WM Y+ K + V VNT LIDMYAKCGS+D
Sbjct: 206 EIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLD 265
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------------ 372
A F +D SA+ V Y HG G
Sbjct: 266 DAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACS 325
Query: 373 -----EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
EEG+ FH + ++GI P +HY +VDLL RAG + A+KFI +PI+ +
Sbjct: 326 HNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILW 385
Query: 427 RALLSA 432
R LLSA
Sbjct: 386 RTLLSA 391
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 133/351 (37%), Gaps = 95/351 (27%)
Query: 99 LEQGKIVHGFMIKLGLELESD------LLISLTAVCRY------------QPNVTLRNAM 140
L +GK +H F +KLG+ SD LI++ C +P V NA+
Sbjct: 128 LAEGKQLHCFAVKLGV---SDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAI 184
Query: 141 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEY 170
I A+N A EA+ LF +WM Y+ K +
Sbjct: 185 IMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGF 244
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
V VNT LIDMYAKCGS+D A F +D SA+IV Y H F + L
Sbjct: 245 DRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATH-GDGFQAISML- 302
Query: 231 SNEENEYGTALDCSCDLEFL-------EQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
NE + D ++ FL G + GF G+ E ++ P
Sbjct: 303 -NEMKKEKVQPD---EITFLGILYACSHNGLVEEGFEYFHGMTNEYGIV----------P 348
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
++ + M+ + G +EA K +I + + I+ L+ + G+V++
Sbjct: 349 SIKHYGCMVDLLGRAGRLDEAYK--------FIDELPIKPTPILWRTLLSACSTHGNVEM 400
Query: 344 APMFFDRTLD------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+R + D V+ S + YG W +H+RK I+
Sbjct: 401 GKRVIERIFELDDSHGGDYVIFSNLCARYG-------KWDDVNHLRKTMID 444
>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 141/338 (41%), Gaps = 86/338 (25%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDG 228
+++ V LIDMY+KC +V A F +K+++ + M+ Y L+E A
Sbjct: 282 EDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGT 341
Query: 229 LLSN--EENEYGTALDCSCDLEFLEQGKI--VHGFMIKLGLELESDLLISLT---AVCRY 281
++ E++E A FL+ K VHG +I+ G E LL S+ A C
Sbjct: 342 MVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNL 401
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
+ +V W+ MI+G+A+NG +EA+ +F
Sbjct: 402 VELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVIPNNVSIMNLMEAC 461
Query: 309 --------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
KW + + V + T +IDMY+KCG ++ + F++ K+VV S
Sbjct: 462 AVSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWS 521
Query: 361 AMTVGYGLHGLGEEGWVLFHHIR------------------------------------K 384
AM + ++GL E +LF I+ K
Sbjct: 522 AMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQK 581
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
HGIEP +HY+ +VD+L+RAG N A + I +P E+
Sbjct: 582 HGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEME 619
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 123/319 (38%), Gaps = 75/319 (23%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY--YIGKSEYRNNVIVNTVLIDMYAKC 187
+QPN++ +I + + +K++ + + YI +S + + V L+ +YA+
Sbjct: 144 FQPNISSLLLVIQAFRE-------LKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV 196
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYG------ 238
+F + ++ DVV S MI G+ G E + N E G
Sbjct: 197 HMYFAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFL-----MFRNMVTEAGIPPDGV 251
Query: 239 ---TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------------- 281
+ L +L+ + G +VHG +I G LE DL + + + Y
Sbjct: 252 TVVSVLKACTNLKDISLGTMVHGLVIFRG--LEDDLFVGNSLIDMYSKCFNVHSAFKAFK 309
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------------ 320
+ N+ WN M+S Y N EA+ L + K E
Sbjct: 310 EIPEKNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLK 369
Query: 321 ------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
Y +N ++ +ID YAKC V+LA M FD KDVV S M G+
Sbjct: 370 CRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFAR 429
Query: 369 HGLGEEGWVLFHHIRKHGI 387
+G +E +F + + I
Sbjct: 430 NGKPDEAISVFKQMNEEVI 448
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 57/280 (20%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG--------YGLHEWSAFGSF 226
I N+ ID Y K G +D A FD T +KD V + M+ G GL W G F
Sbjct: 84 IANST-IDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLC-WFIKGRF 141
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG----LELESDLLISLTAVCRY- 281
N + + +L+ QG HG++ + G L +++ LL V Y
Sbjct: 142 AHFQPNISSLL-LVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMYF 200
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------------------- 312
+ +V W+ MI G+ + G E+ +F +
Sbjct: 201 AHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKAC 260
Query: 313 ----DYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
D +G + +++ V LIDMY+KC +V A F +K+++ +
Sbjct: 261 TNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWN 320
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
M Y L+ E L + + G E A V+ +
Sbjct: 321 LMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQI 360
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 165/362 (45%), Gaps = 47/362 (12%)
Query: 79 LSNEENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY- 130
L +E N G L C L ++GK +HG ++KLG L S L+++ + C+
Sbjct: 99 LLHEFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDI 158
Query: 131 -----------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
++ N++I GY K G E +KLF + + ++ TV
Sbjct: 159 DSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMPE---------RDLFSWTV 209
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239
LID ++KCG VD+A FD+ +++V +AMI GY + D +L++E
Sbjct: 210 LIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGY-------MKAGDFVLASE------ 256
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299
D + + +V G+ + + DL +++ + PN + S A +G
Sbjct: 257 LFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLER-DFTPNHATLVSTFS--AVSG 313
Query: 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
A + KWM Y+ K+ ++ + ++ T LI+MY+KCG+++ A F K +
Sbjct: 314 LASLSTG---KWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLITKKKLGHW 370
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
+A+ VG G+HG+ + FH + + G+ P + V++ + AG K+ M I
Sbjct: 371 TAIIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIGVLNACSHAGLVEDGRKYFDMMAI 430
Query: 420 EL 421
+
Sbjct: 431 RM 432
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 153/382 (40%), Gaps = 108/382 (28%)
Query: 128 CRYQPN-----VTLRNAMISGYAKNGYAEEAVKLFPKW--MDYYIGKSEYRNNVIVNTVL 180
C ++P+ + L+ +S + G+ V L W +D Y+G S L
Sbjct: 117 CFFRPSSYTFTLILKGCSVSDAKRQGFQIHGVVL-KNWFCLDLYVGTS-----------L 164
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNEENEYG 238
+DMY K G V A FD + +V +A+IVGY A FDG++ + +
Sbjct: 165 VDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFN 224
Query: 239 TALDCSCDLEFLEQGK----------------IVHGFMIKLGLELESDLLISLTAVCRYQ 282
+D + ++ + +VHG+ ++ E+ L C +
Sbjct: 225 VMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVD-EARFLFD----CMPE 279
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPK-------------------------------W 311
NV WNAMI GY +NG + +A+KLF + W
Sbjct: 280 KNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGW 339
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH-- 369
+ ++ +++ +V V L+DMYAKCG + A + F+ +KD +A+ GYG++
Sbjct: 340 VHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGC 399
Query: 370 ---------------------------------GLGEEGWVLFHHIRKHGIEPRHQHYAR 396
GL EEG F + + GI P+ +HY
Sbjct: 400 AKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMERFGIVPQIEHYGC 459
Query: 397 VVDLLARAGYSNHAFKFIMNMP 418
++DLL RAG + A K I MP
Sbjct: 460 MIDLLGRAGRLDEAEKLIQAMP 481
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 109/282 (38%), Gaps = 76/282 (26%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTIVF--------- 57
P+ T L+LK C + G ++HG + F L Y+ L D + F
Sbjct: 121 PSSYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKV 180
Query: 58 LDLYHLWSRTEWSAF--------------GSFDGLLSNEENEYGTALDCSCDLEFLEQGK 103
D + S W+A FDG++ + + +D + ++ +
Sbjct: 181 FDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLAR 240
Query: 104 ----------------IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKN 147
+VHG+ ++ E+ L C + NV NAMI GY +N
Sbjct: 241 DLFDKMRVKNVISWTSMVHGYSEDGDVD-EARFLFD----CMPEKNVLSWNAMIRGYCQN 295
Query: 148 GYAEEAVKLFPK-------------------------------WMDYYIGKSEYRNNVIV 176
G + +A+KLF + W+ ++ +++ +V V
Sbjct: 296 GRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHV 355
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
L+DMYAKCG + A + F+ +KD +A+I GYG++
Sbjct: 356 CNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVN 397
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 145/353 (41%), Gaps = 90/353 (25%)
Query: 170 YRNNVIVNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LHEWSAFG 224
++ +V NT LI+ + S+ A FD + D+V+ +++ GY + F
Sbjct: 58 HQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFN 117
Query: 225 SFDGLLSNE---ENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
F +L ++ +N +L +C + + LE+G+ +H +KLG++ LI++
Sbjct: 118 LFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYT 177
Query: 278 VCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
C +P V +NAMI+GYA+ EA+ LF
Sbjct: 178 ECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLS 237
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
KW+ Y K + V VNT LIDM+AKCGS+D A F+ KD
Sbjct: 238 VLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKD 297
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH------------------------------ 385
SAM V Y HG E ++F +R
Sbjct: 298 TQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFS 357
Query: 386 ------GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
GI P +HY +VDLL RAG+ A++FI +PI + R LL+A
Sbjct: 358 WMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAA 410
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 97/226 (42%), Gaps = 52/226 (23%)
Query: 45 YLFDGLFDRTIV-FLDLYHLWSRTE--WSAFGSFDGLLSNE---ENEYGTALDCSCDL-E 97
+LFD + + IV F + +SR+ F F +L ++ +N +L +C + +
Sbjct: 86 HLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAK 145
Query: 98 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMIS 142
LE+G+ +H +KLG++ LI++ C +P V NAMI+
Sbjct: 146 ALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMIT 205
Query: 143 GYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRN 172
GYA+ EA+ LF KW+ Y K +
Sbjct: 206 GYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCK 265
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V VNT LIDM+AKCGS+D A F+ KD SAMIV Y H
Sbjct: 266 YVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANH 311
>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 194/467 (41%), Gaps = 80/467 (17%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
+VLKAC L G ++H QI +G ++ GL +D+Y E S
Sbjct: 190 IVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGL-------VDMYAKCREVEDSR-RV 241
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 134
FD +L + + + + L++G ++ M + +E L SL C
Sbjct: 242 FDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTAC------ 295
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
T A+ G KW+ Y+ KS + N + T L+D+Y KCG + A
Sbjct: 296 TKLGALHQG---------------KWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAF 340
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSF-----DGLLSNEENEYGTALDCSCDL 247
FD D+V +AMIVGY + A F LL N + L
Sbjct: 341 SVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTT-SSVLSACAQT 399
Query: 248 EFLEQGKIVHGFMIKLGLELES--DLLISLTAVCR------------YQPNVTLWNAMIS 293
L G+ VH IKLG E + + L+ + A C + +V WN++IS
Sbjct: 400 GSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIIS 459
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL--------------IDMYA-KC 338
GY +NGYA EA++LF D S Y + + + +VL + YA K
Sbjct: 460 GYTQNGYAYEALELF----DQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKA 515
Query: 339 G---------SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIE 388
G S++L L+ + V+ + + G+ EGW F+ + + +
Sbjct: 516 GLLSGRDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFV 575
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P +HYA +VDLLARAG A FI +PI+ +S+ A L ++
Sbjct: 576 PSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRL 622
>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
Length = 787
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 144/349 (41%), Gaps = 88/349 (25%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSF- 226
Y+++V V + L+ +YA+ G++ A F R +D V S M+ G+ A +
Sbjct: 139 YKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYR 198
Query: 227 ----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT------ 276
DG+ +E G C+ + G VHG +++ G+ ++ SL
Sbjct: 199 RMREDGVKGDEVVMIGVIQACTA-ARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKN 257
Query: 277 ----AVCRY-----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
CR N W+AMISG+A+NG ++EA++LF I
Sbjct: 258 GLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSAL 317
Query: 317 -----------GKS-------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
G+S + N I+ T IDMY+KCGS+ A M F+ D+D+++
Sbjct: 318 LACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
+AM G HG G++ LF + + G+ P H
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMV 437
Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HY +VDLLAR+G A + +M E +++ ALLS
Sbjct: 438 NHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLS 486
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 147/398 (36%), Gaps = 111/398 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLYHL 63
P+ T L L AC L L G V + F G+ VC L+ R D +
Sbjct: 106 PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKV 165
Query: 64 W------SRTEWSAF-GSF------------------DGLLSNEENEYGTALDCSCDLEF 98
+ R WS F DG+ +E G C+
Sbjct: 166 FVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA-ARN 224
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLT----------AVCRYQPNVTLRN-----AMISG 143
+ G VHG +++ G+ ++ SL CR + RN AMISG
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284
Query: 144 YAKNGYAEEAVKLFPKWMDYYI----------------------GKS-------EYRNNV 174
+A+NG ++EA++LF I G+S + N
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
I+ T IDMY+KCGS+ A M F+ D+D+++ +AMI G H G L E
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAH---GRGQDALTLFQEM 401
Query: 235 NEYGTALDCSCDLEFL---------EQGKIVHGFMI--------------------KLGL 265
NE G D + L E+GK+ G M+ + GL
Sbjct: 402 NETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGL 461
Query: 266 -ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
E SDLL S+ A +P V +W A++SG N E
Sbjct: 462 VEEASDLLTSMKA----EPTVAIWVALLSGCLNNKKLE 495
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 179/461 (38%), Gaps = 147/461 (31%)
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------- 132
E +G+AL L L G +HG + K L+ L+ + + CR
Sbjct: 151 EYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFD 210
Query: 133 -----NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------------ 169
N+ N++I+ Y +NG A +A+++F + M+ I E
Sbjct: 211 DMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIRE 270
Query: 170 -------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
YRN++++ L+DMYAKC V+ A + FDR +DVV ++M+ GY
Sbjct: 271 GLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYA 330
Query: 217 -------------------LHEWSAFGSFDGLLSNEENE--------------------Y 237
+ W+A G N ENE +
Sbjct: 331 KASSVKAARLMFSNMMERNVVSWNAL--IAGYTQNGENEEAVRLFLLLKRESIWPTHYTF 388
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLEL----ESDLLISLTAVCRY------------ 281
G L+ +L L+ G+ H ++K G +SD+ + + + Y
Sbjct: 389 GNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLV 448
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335
+ NV+ WNAMI GYA+NGY EA+++F + + E ++V +I +
Sbjct: 449 FERMLERDNVS-WNAMIVGYAQNGYGTEALEIFRE----MLVSGERPDHV----TMIGVL 499
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR-KHGIEPRHQHY 394
+ C GL EEG F + +HG+ P HY
Sbjct: 500 SACSHA----------------------------GLVEEGRCYFQSMTIEHGLVPVKDHY 531
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAG + A I MP+E V +LL+A K+
Sbjct: 532 TCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKV 572
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 145/347 (41%), Gaps = 63/347 (18%)
Query: 95 DLEFLEQGKIVH--GFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEE 152
DL FL+ +K E+ L+ + ++ + ++N ++ Y K G+ E+
Sbjct: 13 DLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLED 72
Query: 153 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI 212
A K+F + RN N VL K G++D A F ++D +AM+
Sbjct: 73 ARKVFDHM--------QQRNTFSWNAVL-GALTKFGALDEALNLFKCMPERDQCSWNAMV 123
Query: 213 VGYGLHE-WSAFGSFDGLLSNEE---NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLE 266
G+ + + F + +E+ NEY G+AL L L G +HG + K
Sbjct: 124 SGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYS 183
Query: 267 LE---SDLLISLTAVCRYQP------------NVTLWNAMISGYAKNGYAEEAVKLFPKW 311
L+ L+ + + CR N+ WN++I+ Y +NG A +A+++F +
Sbjct: 184 LDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRM 243
Query: 312 MDYYIGKSE-------------------------------YRNNVIVNTVLIDMYAKCGS 340
M+ I E YRN++++ L+DMYAKC
Sbjct: 244 MNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRR 303
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
V+ A + FDR +DVV ++M GY + ++F ++ + +
Sbjct: 304 VNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNV 350
>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130 [Vitis vinifera]
gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 124/510 (24%), Positives = 199/510 (39%), Gaps = 119/510 (23%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
+L+ C G +VH ++GF FD + + ++ D+Y SR + A F
Sbjct: 10 LLRNCSKNGLFDQGLQVHAAAVNMGFG----FDLIMNNDLI--DMYGKCSRVDL-ACSVF 62
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
D +L + TAL C +L++G K L L ++ S + + +
Sbjct: 63 DRMLERNVVSW-TALMCG----YLQEGNA------KGSLALLCEMGYSGVKPNEFTFSTS 111
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
L+ G +NG + + KS + +V IDMY+KCG + +A
Sbjct: 112 LKACGALGVVENGMQIHGMCV----------KSGFEWVSVVGNATIDMYSKCGRIGMAEQ 161
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSAFGS---FDGLLSN----EENEYGTALDCSCDLE 248
F++ +++V +AMI G+ HE + S F + +E + + L L
Sbjct: 162 VFNKMPFRNLVSWNAMIAGH-THEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALG 220
Query: 249 FLEQGKIVHGFMIKLGLELE-----SDLLISLTAVCRY------------QPNVTLWNAM 291
+ G +H +I G + + ++ L A C Y Q N+ W+A+
Sbjct: 221 AIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSAL 280
Query: 292 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEY 321
I G+A+ G EA+ LF K M YI K
Sbjct: 281 IQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPS 340
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
++ V +IDMY KCG + A F ++VV + M GYG HGLGE+ LF+
Sbjct: 341 GLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNR 400
Query: 382 IRKHGIE------------------------------------PRHQHYARVVDLLARAG 405
++ GIE P +HYA +VD+L RAG
Sbjct: 401 MQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAG 460
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A I NM ++ + + LLSA ++
Sbjct: 461 QLKEAKNLIENMKLKPNEGIWQTLLSACRV 490
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 118/309 (38%), Gaps = 35/309 (11%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ P+ T LKAC AL ++ G ++H + + GF + R I+ +
Sbjct: 197 MQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISI-------RNIIASAI 249
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
L+++ G + + +EQ ++ + G E +L
Sbjct: 250 VDLYAKC-------------------GYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNL 290
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
L ++ + + +V+ + + +A+ A+ K M YI K ++ V +
Sbjct: 291 LEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSI 350
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTA 240
IDMY KCG + A F ++VV + MI GYG H G L N G
Sbjct: 351 IDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKH---GLGEKAIHLFNRMQLDGIE 407
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300
LD L L H +I+ E S L + + +PN+ + M+ + G
Sbjct: 408 LDEVAYLALLS--ACSHSGLIRESQEYFSRLCNNH----QMKPNIEHYACMVDILGRAGQ 461
Query: 301 AEEAVKLFP 309
+EA L
Sbjct: 462 LKEAKNLIE 470
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 156/405 (38%), Gaps = 117/405 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY--------YIG---------------- 166
+ N+ N +IS YA+NG ++ +F ++ YIG
Sbjct: 73 ERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQ 132
Query: 167 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE- 219
+S +N VNT + +MY KCG ++ A + F++ +K+ V + ++VGY E
Sbjct: 133 IHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAER 192
Query: 220 -WSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--- 271
A F +++ +E + L LE L G+ +HG ++KLGLE E +
Sbjct: 193 QMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTP 252
Query: 272 LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPK--------- 310
L+ C +PN W+A+I+GY + G EEA+K F
Sbjct: 253 LVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDIN 312
Query: 311 -------------WMDYYIGKSEYRNNVIVNTV--------LIDMYAKCGSVDLAPMFFD 349
D+ G + + + + V +I MY++CG +D A F+
Sbjct: 313 SFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFE 372
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------ 391
D D V +A+ GY G E LF ++ G+ P
Sbjct: 373 SIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIE 432
Query: 392 ------------------QHYARVVDLLARAGYSNHAFKFIMNMP 418
HY +VD+ +RAG+ A + I +MP
Sbjct: 433 GRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMP 477
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 106/273 (38%), Gaps = 54/273 (19%)
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNE 233
N+VL MY KCGS+ A FD ++++V + +I Y G+ + F F +L E
Sbjct: 49 NSVL-KMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFD-KGFCMFSNMLELE 106
Query: 234 ENEYGTA----LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRY----- 281
G+ L + LE GK +H I+ GL + + +++ + C +
Sbjct: 107 TKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAE 166
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------- 321
+ N W ++ GY + +A+ LF K ++ + EY
Sbjct: 167 LVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLE 226
Query: 322 -----------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ V V T L+D Y KC +++ A F+ + + V SA+
Sbjct: 227 ELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALIT 286
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397
GY G EE F +R ++ Y +
Sbjct: 287 GYCQMGEFEEALKTFESLRTRSVDINSFTYTSI 319
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 45/180 (25%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR--------- 129
+E + L LE L G+ +HG ++KLGLE E + L+ C
Sbjct: 211 DEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAF 270
Query: 130 ---YQPNVTLRNAMISGYAKNGYAEEAVKLFPK----------------------WMDYY 164
+PN +A+I+GY + G EEA+K F D+
Sbjct: 271 EWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFN 330
Query: 165 IGKSEYRNNVIVNTV--------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
G + + + + V +I MY++CG +D A F+ D D V +A+I GY
Sbjct: 331 SGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYA 390
>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 681
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 144/349 (41%), Gaps = 88/349 (25%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSF- 226
Y+++V V + L+ +YA+ G++ A F R +D V S M+ G+ A +
Sbjct: 139 YKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYR 198
Query: 227 ----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT------ 276
DG+ +E G C+ + G VHG +++ G+ ++ SL
Sbjct: 199 RMREDGVKGDEVVMIGVIQACTA-ARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKN 257
Query: 277 ----AVCRY-----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
CR N W+AMISG+A+NG ++EA++LF I
Sbjct: 258 GLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSAL 317
Query: 317 -----------GKS-------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
G+S + N I+ T IDMY+KCGS+ A M F+ D+D+++
Sbjct: 318 LACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLIL 377
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
+AM G HG G++ LF + + G+ P H
Sbjct: 378 WNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMV 437
Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HY +VDLLAR+G A + +M E +++ ALLS
Sbjct: 438 NHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLS 486
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 147/398 (36%), Gaps = 111/398 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLYHL 63
P+ T L L AC L L G V + F G+ VC L+ R D +
Sbjct: 106 PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKV 165
Query: 64 W------SRTEWSAF-GSF------------------DGLLSNEENEYGTALDCSCDLEF 98
+ R WS F DG+ +E G C+
Sbjct: 166 FVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA-ARN 224
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLT----------AVCRYQPNVTLRN-----AMISG 143
+ G VHG +++ G+ ++ SL CR + RN AMISG
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284
Query: 144 YAKNGYAEEAVKLFPKWMDYYI----------------------GKS-------EYRNNV 174
+A+NG ++EA++LF I G+S + N
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
I+ T IDMY+KCGS+ A M F+ D+D+++ +AMI G H G L E
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAH---GRGQDALTLFQEM 401
Query: 235 NEYGTALDCSCDLEFL---------EQGKIVHGFMI--------------------KLGL 265
NE G D + L E+GK+ G M+ + GL
Sbjct: 402 NETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGL 461
Query: 266 -ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
E SDLL S+ A +P V +W A++SG N E
Sbjct: 462 VEEASDLLTSMKA----EPTVAIWVALLSGCLNNKKLE 495
>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 857
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 135/593 (22%), Positives = 226/593 (38%), Gaps = 165/593 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG----------FLVCYLFDG------ 49
V+P+ T P ++KACVAL + + + SLG + YL G
Sbjct: 134 VSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPS 193
Query: 50 -LFDRTI--------VFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCS---CDLE 97
LFDR + V L+ Y + S F + ++ + DC C +
Sbjct: 194 KLFDRVLQKDCVIWNVMLNGYAKCGALD-SVIKGFSVMRMDQISPNAVTFDCVLSVCASK 252
Query: 98 FL-EQGKIVHGFMIKLGLELESDL---LISLTAVC-RY-----------QPNVTLRNAMI 141
L + G +HG ++ G++ E + L+S+ + C R+ + + N MI
Sbjct: 253 LLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMI 312
Query: 142 SGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYR 171
SGY ++G EE++ F K + YI +
Sbjct: 313 SGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSIS 372
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL-- 229
++ + + LID Y KC V +A F + DVV+ +AMI GY LH S +
Sbjct: 373 LDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGY-LHNGLYIDSLEMFRW 431
Query: 230 -----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-- 279
+S E + L L L+ G+ +HGF+IK G + ++ +I + A C
Sbjct: 432 LVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 491
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+ ++ WN+MI+ A++ A+ +F
Sbjct: 492 MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSA 551
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K + ++ K ++V + LIDMYAKCG++ A F +K++V
Sbjct: 552 CANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSW 611
Query: 360 SAMTVGYGLHGLGEEGWVLFHHI------------------------------------- 382
+++ G HG ++ LFH +
Sbjct: 612 NSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMT 671
Query: 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI+P+ +HYA VVDL RAG A++ + +MP V LL A ++
Sbjct: 672 EDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRL 724
>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
Length = 1251
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 156/357 (43%), Gaps = 98/357 (27%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFF---DRTLDKDVVMRSAMIVGYGL--HEWSAFGSFD 227
V+ I Y KCG +D A + F DR D+ VV +++ + + + AFG +
Sbjct: 783 QATVSNTWISAYGKCGDLDSAKLVFEAIDRG-DRTVVSWNSVFKAFAVFGEAFDAFGHYR 841
Query: 228 GLLSNE-ENEYGT--ALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAV----- 278
+L +E + + T L SC + + L QG+++H I LG + + + + + ++
Sbjct: 842 LMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSG 901
Query: 279 --CRYQ------PNVTL--WNAMISGYAKNGYAEEAVKLFP------------------- 309
C + P+ T W MISGYA+ G +EA+ LF
Sbjct: 902 DSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLIS 961
Query: 310 -----------KWMDYYIGKSE----YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
KW+D G+++ ++NV+V LIDMY+KCGS+D A FD T +K
Sbjct: 962 GCGKFGSLEIGKWID---GRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEK 1018
Query: 355 DVVMRSAMTVGYGLHGLG-----------------------------------EEGWVLF 379
+V + M GY L+G+ E+GW F
Sbjct: 1019 TMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYF 1078
Query: 380 HHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H +++ + I P HY+ +VDLL R G + A + I NM + + ALLSA KI
Sbjct: 1079 HIMKQVYNISPGLDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGALLSACKI 1135
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 56/203 (27%)
Query: 69 WSAFGSFDGLLSNE-ENEYGT--ALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISL 124
+ AFG + +L +E + + T L SC + + L QG+++H I LG + + + + +
Sbjct: 834 FDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTF 893
Query: 125 TAV-------CRYQ------PNVTLRN--AMISGYAKNGYAEEAVKLFP----------- 158
++ C + P+ T + MISGYA+ G +EA+ LF
Sbjct: 894 ISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDL 953
Query: 159 -------------------KWMDYYIGKSE----YRNNVIVNTVLIDMYAKCGSVDLAPM 195
KW+D G+++ ++NV+V LIDMY+KCGS+D A
Sbjct: 954 VTLLSLISGCGKFGSLEIGKWID---GRADMYGCKKDNVMVCNALIDMYSKCGSIDEARD 1010
Query: 196 FFDRTLDKDVVMRSAMIVGYGLH 218
FD T +K +V + MI GY L+
Sbjct: 1011 IFDNTSEKTMVTWTTMIAGYALN 1033
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 109/276 (39%), Gaps = 53/276 (19%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFG 224
KS + ++V V T +DM+ KC S+D A F+R +D +AM+ G+ H F
Sbjct: 676 KSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFS 735
Query: 225 SFDGLLSNEENEYG----TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
F + +E T + + + L+ K++H F I+LG++L+ S+ IS
Sbjct: 736 LFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYG 795
Query: 278 VC--------------RYQPNVTLWNAMISGYAKNGYAEEAV--------KLFPKWMDYY 315
C R V WN++ +A G A +A F + +
Sbjct: 796 KCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTF 855
Query: 316 I--------------GKSEYRNNVIVNT--------VLIDMYAKCGSVDLAPMFFDRTLD 353
I G+ + + + + T I MY+K G A + FD
Sbjct: 856 INLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPS 915
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ V + M GY G +E LFH + K G+ P
Sbjct: 916 RTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNP 951
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS + ++V V T +DM+ KC S+D A F+R +D +AM G+ G ++ +
Sbjct: 676 KSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFS 735
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSN--------HAFKFIMNMPIELRLSVRRAL 429
LF +R I P V+ L+ A + HAF + + ++L+ +V
Sbjct: 736 LFREMRLDEIPP---DSVTVMTLIQSASFEKSLKLLKVMHAFG--IRLGVDLQATVSNTW 790
Query: 430 LSAW 433
+SA+
Sbjct: 791 ISAY 794
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 179/449 (39%), Gaps = 117/449 (26%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 136
GLL N C+ F E G+ +HG ++KLG +L+ + +
Sbjct: 59 GLLPNSYTFPFLLKSCAKSKTFTE-GQQIHGQVLKLGFDLD----------------LYV 101
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
++IS Y +N E+A K+F +S +R+ V+ T LI YA G + A
Sbjct: 102 HTSLISMYVQNWRLEDAYKVF--------DRSSHRD-VVSYTALITGYASRGDIRSAQKL 152
Query: 197 FDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLS----NEENEYGTALDCSCDLEF 249
FD KDVV +AMI GY G ++ A F+ ++ +E+ Y T L
Sbjct: 153 FDEIPVKDVVSWNAMISGYAETGCYK-EALELFEEMMKMNVRPDESTYVTVLSACAHSGS 211
Query: 250 LEQGKIVHGFMIKLGLELESDLLISL-----------TAVCRYQ----PNVTLWNAMISG 294
+E G+ VH ++ G + ++ +L TA +Q +V WN +I G
Sbjct: 212 IELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGG 271
Query: 295 YAKNGYAEEAVKLFP------------------------------KWMDYYIGK--SEYR 322
Y +EA+ LF +W+ YI K
Sbjct: 272 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVT 331
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
N + T LIDMYAKCG ++ A F+ L K + +AM G+ +HG + + LF +
Sbjct: 332 NASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRM 391
Query: 383 RKHGIEP---------------------RH---------------QHYARVVDLLARAGY 406
RK GIEP RH +HY ++DLL +G
Sbjct: 392 RKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGL 451
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A + I M +E + +LL A K+
Sbjct: 452 FKEAEEMINTMEMEPDGVIWCSLLKACKM 480
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 160/435 (36%), Gaps = 131/435 (30%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL---------TAVCRY-- 130
+++ AL + L+ G+ V + +K GL + +L SL A R
Sbjct: 119 DQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVF 178
Query: 131 ----QPNVTLRNAMISGYAKNGYAEEAVKLFP---------------------------- 158
+ V + NA+++ Y KNG E V++F
Sbjct: 179 DAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAK 238
Query: 159 --KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
KW+ ++ + N + T L+DMYAKCG + A FD +DVV
Sbjct: 239 LGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVA--------- 289
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
WSA S Y A C E+ L S
Sbjct: 290 ---WSAMIS----------GYTQADQCR-----------------------EALGLFSEM 313
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+ R +PN +++S A G E KW+ Y+ + I+ T L+D YA
Sbjct: 314 QLARVEPNDVTMVSVLSACAVLGALETG-----KWVHSYVRRKRLSLTTILGTALVDFYA 368
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------- 389
KCG +D A F+ K+ +A+ G +G G E LF +R+ GIEP
Sbjct: 369 KCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIG 428
Query: 390 -----------------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
R +HY +VDLL RAG + A++FI MPIE
Sbjct: 429 VLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIE 488
Query: 421 LRLSVRRALLSAWKI 435
+ RALLS+ +
Sbjct: 489 PNAVIWRALLSSCAV 503
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 39/216 (18%)
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
L S + R +PN +++S A G E KW+ Y+ + I+ T L
Sbjct: 309 LFSEMQLARVEPNDVTMVSVLSACAVLGALETG-----KWVHSYVRRKRLSLTTILGTAL 363
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEWSAFGSFD--GLLSNE 233
+D YAKCG +D A F+ K+ +A+I G G F S G+ +
Sbjct: 364 VDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTD 423
Query: 234 ENEYGTALDCSCDLEFLEQGK---------------IVH-GFMIKL----GLELESDLLI 273
G + CS +E+G+ + H G M+ L GL E+ I
Sbjct: 424 VTFIGVLMACSHSC-LVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFI 482
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKN---GYAEEAVK 306
+ +PN +W A++S A + G EEA+K
Sbjct: 483 RTMPI---EPNAVIWRALLSSCAVHRNVGIGEEALK 515
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 134/529 (25%), Positives = 202/529 (38%), Gaps = 129/529 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVC-- 44
MQ V PN T VL A +L G VH I + G + C
Sbjct: 336 MQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGS 395
Query: 45 -----YLFDGLFDRTIVF-----------------LDLYHLWSRTEWSAFGSFDGLLSNE 82
+F+ L +R ++ ++YH R +G++ N+
Sbjct: 396 YKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQR---------EGMMPNK 446
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------RYQPN 133
Y L+ + L G+ +H ++K G + + LIS+ A C R N
Sbjct: 447 IT-YVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFN 505
Query: 134 VTLR------NAMISGYAKNGYAEEAVKLF------------------------PKWMDY 163
+R AMI G AK+G EA+ +F P +D+
Sbjct: 506 KMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDW 565
Query: 164 ------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
+ ++ + V L++MY+ CGSV A FDR +D+V +AMI GY
Sbjct: 566 GRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAA 625
Query: 218 HEW--SAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
H A FD L L ++ Y L+ + LE K +H ++K G
Sbjct: 626 HNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDG------- 678
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331
Y + +L NA++S YAK G +A+ +F K M + NVI +
Sbjct: 679 ---------YLSDTSLGNALVSTYAKCGSFSDALLVFDKMM---------KRNVISWNAI 720
Query: 332 IDMYAKCGSVDLAPMFFDRT----LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHG 386
I A+ G F+R + D+V ++ GL EEG F + R G
Sbjct: 721 IGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFG 780
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I P +HY +VDLL RAG + I MP + + ALL A +I
Sbjct: 781 ITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRI 829
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 141/346 (40%), Gaps = 87/346 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------K 167
NAM+ GY + GY EEA+KL + + + K
Sbjct: 213 NAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMK 272
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGS 225
+ +V V +++MYAKCGS+ A FD+ K VV + +I GY H AF
Sbjct: 273 ARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEI 332
Query: 226 F-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-- 278
F +G++ N Y L+ L+ GK VH ++ G ESDL + V
Sbjct: 333 FQKMQQEGVVPNRIT-YINVLNAFSGPAALKWGKTVHSHILNAG--HESDLAVGTALVKM 389
Query: 279 ---------CRY------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY 314
CR ++ WN MI G A+ G EEA +++ P + Y
Sbjct: 390 YAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITY 449
Query: 315 YI---------------------GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
I K + ++ V LI MYA+CGS+ A + F++ +
Sbjct: 450 VILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVR 509
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
KD++ +AM G GLG E +F +++ G++P Y +++
Sbjct: 510 KDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILN 555
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 63/275 (22%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS--AMIVGYGLHEWSAFGSFDGLLS--NE 233
LI+MY +CGS++ A +++ + + S AM+VGY +G + L E
Sbjct: 180 NALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGY-----VQYGYIEEALKLLRE 234
Query: 234 ENEYGTALDCSCDLEF---------LEQGKIVHGFMIKLGLELE---SDLLISLTAVC-- 279
++G AL + + LE G+ +H +K L + ++ ++++ A C
Sbjct: 235 MQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGS 294
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+V W +I GYA G++E A ++F
Sbjct: 295 IHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA 354
Query: 310 -------KW---MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
KW + +I + + +++ V T L+ MYAKCGS F++ +++D++
Sbjct: 355 FSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 414
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
+ M G G EE ++H +++ G+ P Y
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITY 449
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 33/185 (17%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------ 317
+ V WNAM+ GY + GY EEA+KL + + +
Sbjct: 206 ERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGRE 265
Query: 318 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
K+ +V V +++MYAKCGS+ A FD+ K VV + + GY G
Sbjct: 266 IHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGH 325
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLL---ARAGYSNHAFKFIMNMPIELRLSVRRA 428
E + +F +++ G+ P Y V++ A + I+N E L+V A
Sbjct: 326 SEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTA 385
Query: 429 LLSAW 433
L+ +
Sbjct: 386 LVKMY 390
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 100/413 (24%), Positives = 151/413 (36%), Gaps = 96/413 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVC-- 44
MQ A + PN T +L AC + +L G R+H Q+ G + +C
Sbjct: 538 MQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGS 597
Query: 45 -----YLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL----LSNEENEYGTALDC 92
+FD + R IV + + A FD L L ++ Y L+
Sbjct: 598 VKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNA 657
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEE 152
+ LE K +H ++K G Y + +L NA++S YAK G +
Sbjct: 658 CANSGSLEWAKEIHSLVLKDG----------------YLSDTSLGNALVSTYAKCGSFSD 701
Query: 153 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT----LDKDVVMR 208
A+ +F K M + NVI +I A+ G F+R + D+V
Sbjct: 702 ALLVFDKMM---------KRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTF 752
Query: 209 SAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH-GFMIK-LGLE 266
+++ + S GLL E G CS +F I H G M+ LG
Sbjct: 753 VSLL---------SACSHAGLL-----EEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRA 798
Query: 267 LESDLLISLTAVCRYQPNVTLWNAMISGYAKNG-------YAEEAVKLFPKWMDYYIGKS 319
+ D + +L +Q N +W A++ +G AE ++KL P
Sbjct: 799 GQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDP---------- 848
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM---RSAMTVGYGLH 369
+N V L MYA G D A + V RS + VG LH
Sbjct: 849 ---DNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLH 898
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 186/456 (40%), Gaps = 93/456 (20%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHL 63
A V P+ T V+ AL +G +VH QI LGF Y F G +D+Y
Sbjct: 139 AGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGA-YAFTG-----SPLVDMY-- 190
Query: 64 WSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 123
+ G D +E E + C+ + L + K+V E D +
Sbjct: 191 ---AKVGPIG--DARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITW 245
Query: 124 LTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------- 158
T M++G +NG EA+ +F
Sbjct: 246 TT--------------MVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALA 291
Query: 159 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
K + YI ++ Y +NV V + L+DMY+KC SV LA F R + K+++ +AMIV
Sbjct: 292 ALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIV 351
Query: 214 GYGLHEW--SAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
GYG + A F + + ++ G+ + +L LE+G H + GL
Sbjct: 352 GYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL-- 409
Query: 268 ESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 327
+P VT+ NA+++ Y K G E+A +LF + M ++ + +
Sbjct: 410 --------------RPYVTVSNALVTLYGKCGSIEDAHRLFDE-MSFH--------DQVS 446
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIR 383
T L+ YA+ G F++ L K V +G GL ++G FH ++
Sbjct: 447 WTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQ 506
Query: 384 K-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+ H I P HY ++DL +R+G+ A +FI MP
Sbjct: 507 QDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMP 542
>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 602
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 138/306 (45%), Gaps = 53/306 (17%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
I ++ + +N+ +N+ L+D+YAKC ++ A FD D V +++I G+ + A
Sbjct: 127 IIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEA 186
Query: 223 FGSFDGLLSNEEN----EYGTALDCSCDLE-FLEQGKIVHGFMIKLGLELES---DLLIS 274
F +L ++ Y + + LE +Q ++H ++KLG +++ LI
Sbjct: 187 ILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLID 246
Query: 275 LTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF-------------- 308
+ C + + L+N+MISGY++N + EEA+KLF
Sbjct: 247 CYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHT 306
Query: 309 ----------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ + + K +NV V + L+DMY+KCGS+D A FD+ +
Sbjct: 307 LTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAV 366
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAF 411
+K+ V+ ++M GY G G EG LF + + G P H + V+ AG+ +
Sbjct: 367 EKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGFLDKGI 426
Query: 412 KFIMNM 417
+ M
Sbjct: 427 DYFNQM 432
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 53/255 (20%)
Query: 98 FLEQGKIVHGFMIKLGLELES---DLLISLTAVC------------RYQPNVTLRNAMIS 142
+Q ++H ++KLG +++ LI + C + + L N+MIS
Sbjct: 218 IFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMIS 277
Query: 143 GYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRN 172
GY++N + EEA+KLF + + + K +
Sbjct: 278 GYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSES 337
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
NV V + L+DMY+KCGS+D A FD+ ++K+ V+ ++MI GY G GL
Sbjct: 338 NVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQSGRGPEGL--GLFER 395
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
E G D C L H + G++ + + V P++ + ++
Sbjct: 396 LVTEEGFTPDHICFTAVLTACN--HAGFLDKGIDYFNQMRRDYGLV----PDLDQYACLV 449
Query: 293 SGYAKNGYAEEAVKL 307
Y +NG+ +A +L
Sbjct: 450 DLYVRNGHLRKAKEL 464
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 151/370 (40%), Gaps = 86/370 (23%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKSE 169
P+ N MI GYAK G+ EA+K + + D +GKS
Sbjct: 191 PDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSV 250
Query: 170 Y----------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
+ +N+I+N L+DMY KC + +A F+ + KD + + MI GY
Sbjct: 251 HAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAK-- 308
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
+ N E + D C + + I+ G+ K + L ++ A
Sbjct: 309 ----------VGNLEIAHNFFEDMPCR-DLVSWNSIIAGYAQKGDCLMVQRLFENMVAEN 357
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ VT+ N ++S A+ G +W+ ++ + + + + + + IDMY KCG
Sbjct: 358 IWPDFVTIIN-LVSAAAEIGALHHG-----RWIHGWVVRMQMKIDAFLGSAFIDMYWKCG 411
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR---------------- 383
S+ A M F +KDV + + M G+ HG G + LF+ ++
Sbjct: 412 SIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTA 471
Query: 384 -------------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
++GIEP +HY +VDLL R+G + I MP++ S
Sbjct: 472 CSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRS 531
Query: 425 VRRALLSAWK 434
+ A+LSA +
Sbjct: 532 IWGAVLSACR 541
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 109/429 (25%), Positives = 167/429 (38%), Gaps = 114/429 (26%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QP 132
L L F++ G VHGF+ K G+ SDL + + Y Q
Sbjct: 100 LKACSRLGFVDFGMQVHGFLRKTGIY--SDLFLQNCLIGLYLKCGCLGFARQVFDRMPQR 157
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
+ N+MI GY K G E A +LF + E +N + N ++ V++
Sbjct: 158 DSVSYNSMIDGYVKCGLIESARELFD------LMPREKKNLISWNCMISGYTQSEDGVNV 211
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A FD +KD++ +++I GY H A FD + + + T +D L F+
Sbjct: 212 ASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFV 271
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF-- 308
Q K KL E+ Q +V +N+M++GY +N Y EA+ +F
Sbjct: 272 HQAK-------KLFDEMP-------------QRDVVAYNSMMAGYVQNKYHAEAIGIFND 311
Query: 309 ---------------------------PKWMD--YYIGKSEYRNNVIVNTVLIDMYAKCG 339
K +D YI +++R + LID Y+KCG
Sbjct: 312 MEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCG 371
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------------- 382
S+ + F+ +K + +AM G +HGLGE + + I
Sbjct: 372 SIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLN 431
Query: 383 -------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
RKH IEP+ QHY +VD+L+R+G A I MPIE
Sbjct: 432 ACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPND 491
Query: 424 SVRRALLSA 432
+ R L+A
Sbjct: 492 VIWRTFLTA 500
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 144/349 (41%), Gaps = 90/349 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV-----MRSAMIVGYGLHEWSAFGSFD--G 228
V+ +DMY K G + LA F +++VV M +A++ G L A+ G
Sbjct: 49 VSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAG 108
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVCRYQ--- 282
L N + C+ + +L G+ HGF++K G E++ +L S+ CR
Sbjct: 109 GLPNVVSACAFFNACAGAM-YLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKA 167
Query: 283 ---------PNVTLWNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG--------- 317
N W +M++ YA+NG EEA + + D+ +
Sbjct: 168 RAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGL 227
Query: 318 --------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+S N+ V + L+DMY KCG V+ A F T +++V +AM
Sbjct: 228 LGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMI 287
Query: 364 VGYG------------------------------------LHGLGEEGWVLFHHIR-KHG 386
GY GL ++G+ LF +R + G
Sbjct: 288 GGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFG 347
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
IEPR +HYA VVDLL RAG A++ I MP+ +SV ALL A K+
Sbjct: 348 IEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKM 396
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 162/387 (41%), Gaps = 104/387 (26%)
Query: 153 AVKLFPKWMDYYIGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
A+K D + GK Y++++ V++ LI MY+ CG ++ A FD +D
Sbjct: 82 AIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRD 141
Query: 205 VVMRSAMIVGYGLH--EWSAFGSFDGLLSNEENE--------YGTALDCSCDLEFLEQG- 253
+V ++MI GY L+ A F LL +E ++ G S +G
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201
Query: 254 -KIVHGFMIKLGLELESDLLISL-----------TAVCR------YQPNVTLWNAMISGY 295
+ +H F+IK G + + +L AV R + +N+++S Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261
Query: 296 AKNGYAEEAVKLFPKWMD-----------------------YYIGKSEY--------RNN 324
A++G + EA ++F + + IGK + ++
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDD 321
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG-------------- 370
VIV T +IDMY KCG V+ A FDR +K+V +AM GYG+HG
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381
Query: 371 ---------------------LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSN 408
L EGW F+ ++ + G+EP +HY +VDLL RAG+
Sbjct: 382 SGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQ 441
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKI 435
A+ I M ++ + +LL+A +I
Sbjct: 442 KAYDLIQRMKMKPDSIIWSSLLAACRI 468
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 30/128 (23%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAV---------KLFP-------------KWMDYYIGKS 319
+ +V WN++I+ A++G + EA+ L+P D + GK
Sbjct: 38 KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97
Query: 320 E--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
Y++++ V++ LI MY+ CG ++ A FD +D+V ++M GY L+G
Sbjct: 98 THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGN 157
Query: 372 GEEGWVLF 379
+ LF
Sbjct: 158 ALDAVSLF 165
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 119/322 (36%), Gaps = 86/322 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF-----------------------LVCYLFDGLFD 52
V+ AC +P+ + +H + GF + +FD + D
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248
Query: 53 R-TIVFLDLYHLWSRTEWS--AFGSFDGLLSNEENEY-----GTALDCSCDLEFLEQGKI 104
+ + + + +++++ S AF F L+ N+ + T L L GK
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308
Query: 105 VHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAMISGYAKN 147
+H +I++GLE D+++ + + Y NV AMI+GY +
Sbjct: 309 IHDQVIRMGLE--DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMH 366
Query: 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207
G+A +A++LFP +D S R N I + + A C
Sbjct: 367 GHAAKALELFPAMID-----SGVRPNYI---TFVSVLAACSH------------------ 400
Query: 208 RSAMIVGYGLHEWSAFGSFDGLLSNEE--NEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
G + W F + G E YG +D FL++ + + ++ +
Sbjct: 401 -----AGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---YDLIQRMKM 452
Query: 266 ELESDLLISLTAVCRYQPNVTL 287
+ +S + SL A CR NV L
Sbjct: 453 KPDSIIWSSLLAACRIHKNVEL 474
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 108/427 (25%), Positives = 172/427 (40%), Gaps = 121/427 (28%)
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
E+ +V+ + K GL++++ L+ + C +P V L I G
Sbjct: 61 EEAILVYNHVRKKGLKVDTYTLVFVIKACGLRP-VILEGEQIHGQ--------------- 104
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYA----KCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
I K + VI+ T L+++Y CG FD +D+VM +A+I Y
Sbjct: 105 -----IFKLGFEFEVIIQTALLNLYGLFDEDCG----LQQIFDEMPQRDLVMWNALIAAY 155
Query: 216 GLHEWSAFG----SFDGLLSNEENEYGTALD----CSCDLEFLEQGKIVHGFMIKLGLEL 267
H + S+D + SN + TA+ CS L L +GK VHG++ K +E
Sbjct: 156 A-HGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCS-SLRALREGKAVHGYVTKNLIEF 213
Query: 268 E---SDLLISLTAVC----------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPK-- 310
+ + LI + + C + P NV W ++I+GY+ N EA+ F +
Sbjct: 214 DVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQME 273
Query: 311 ----------------------------WMDYYIGK-SEYRNNVIVNTVLIDMYAKCGSV 341
W+ Y+ K + + + L+DM+AKCG++
Sbjct: 274 AENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNI 333
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG----------------------------- 372
+ A FD +K +V + M G +HG G
Sbjct: 334 NRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSAC 393
Query: 373 ------EEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
+EGW F + + I P +HY +VD+L RAG + AFKF+ NMPI+ + V
Sbjct: 394 SHAGLVDEGWRCFSSMEADYHISPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIV 453
Query: 426 RRALLSA 432
R LL A
Sbjct: 454 WRTLLGA 460
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 113/279 (40%), Gaps = 76/279 (27%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFD-------GLFDRTIVFLDLYHLWSRT 67
V+KAC P +L G ++HGQIF LGF + GLFD ++ +
Sbjct: 84 FVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQR 143
Query: 68 E---WSAF---------------GSFDGLLSNEENEYGTALD----CSCDLEFLEQGKIV 105
+ W+A S+D + SN + TA+ CS L L +GK V
Sbjct: 144 DLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCS-SLRALREGKAV 202
Query: 106 HGFMIKLGLELE---SDLLISLTAVC----------RYQP--NVTLRNAMISGYAKNGYA 150
HG++ K +E + + LI + + C + P NV ++I+GY+ N
Sbjct: 203 HGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCP 262
Query: 151 EEAVKLFPK------------------------------WMDYYIGK-SEYRNNVIVNTV 179
EA+ F + W+ Y+ K + + +
Sbjct: 263 NEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANA 322
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
L+DM+AKCG+++ A FD +K +V + MI G +H
Sbjct: 323 LMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMH 361
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 137/590 (23%), Positives = 224/590 (37%), Gaps = 173/590 (29%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY-----------LFDGL 50
T P VLKAC S+ G +HG +F LGF L+ Y +FD +
Sbjct: 9 TFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEM 68
Query: 51 FDRTIV--------------FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDL 96
+R +V + + HL+ + G N + C+ L
Sbjct: 69 LERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRS-----GFRPNMVSIVSVLPVCA-GL 122
Query: 97 EFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMI 141
E G+ +H +++K GL+ + + L+ + C Y + N NA+I
Sbjct: 123 EDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAII 182
Query: 142 SGYAKNGYAEEAVKLFPKWMD----------------------YYIGKSEY--------R 171
+ A ++A+++F +D + GK +
Sbjct: 183 TSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLE 242
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG----- 224
+++ V LIDMYAK G A F++ +K++V +AM+ + + E +A
Sbjct: 243 SDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQM 302
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-- 279
DG + N + L + FL GK +H I+ G ++ S+ L + A C
Sbjct: 303 QADGEIPNSVT-FTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGC 361
Query: 280 ----RYQPNVTL-----WNAMISGYAKNGYAEEAVKLF----PKWMDY----YIG----- 317
R ++L +N +I GY++ E+++LF K M Y+G
Sbjct: 362 LNLARRVFKISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISAC 421
Query: 318 -----------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+ ++ + L+D Y KCG +DLA F + +D +
Sbjct: 422 ANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWN 481
Query: 361 AMTVGYGL-----------------------------------HGLGEEGWVLFHHIRKH 385
+M +GYG+ GL EEG F H++
Sbjct: 482 SMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQ 541
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I+P HYA +VDLL RAG A K I ++PIE +V ALL A +I
Sbjct: 542 NIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRI 591
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 135/333 (40%), Gaps = 89/333 (26%)
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----LHEWSAFGSF--DGLLSNEENEYGTA 240
S+ A F+ + D+V+ ++M GY L +S F DG+L + + +
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYT-FPSL 135
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNV 285
L + LE+G+ +H +KLGL+ LI++ C +P V
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCV 195
Query: 286 TLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 315
+NAMI+GYA+ EA+ LF KW+ Y
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
K + V VNT LIDM+AKCGS+D A F++ KD SAM V Y HG E+
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKS 315
Query: 376 WVLFHHIR------------------------------------KHGIEPRHQHYARVVD 399
++F +R K GI P +HY +VD
Sbjct: 316 MLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVD 375
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
LL+ AG A++FI +PI + R LL+A
Sbjct: 376 LLSXAGNLEDAYEFIDKLPISPTPMLWRILLAA 408
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 70/165 (42%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISG 143
LE+G+ +H +KLGL+ LI++ C +P V NAMI+G
Sbjct: 145 LEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITG 204
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
YA+ EA+ LF KW+ Y K +
Sbjct: 205 YARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY 264
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V VNT LIDM+AKCGS+D A F++ KD SAMIV Y H
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 158/342 (46%), Gaps = 58/342 (16%)
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
E G VH +IK G E SD I +N++I YA G + A K+F
Sbjct: 131 ETGVSVHAHIIKTGHE--SDRFI--------------QNSLIHMYAACGNSMWAQKVF-- 172
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLH 218
S + NV+ ++D YAKCG + +A F+ +KDV S++I GY
Sbjct: 173 -------DSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAG 225
Query: 219 EWS-AFGSFDGLLSN--EENEYG-TALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLI 273
E+S A F+ + S + NE ++ C+C + LE+G++++ +++ GL L
Sbjct: 226 EYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPL------ 279
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 333
+ L +++ YAK G EEA+ +F + + KS+ +V++ +I
Sbjct: 280 ----------TLVLQTSLVDMYAKCGAIEEALLIFRR-----VSKSQ--TDVLIWNAVIG 322
Query: 334 MYAKCGSVDLAPMFFDRT----LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
A G V+ + F + D V + GL +E W F + K G+ P
Sbjct: 323 GLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFFESLSKCGMTP 382
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HYA +VD+LARAG A++FI MP E S+ ALLS
Sbjct: 383 TSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASMLGALLS 424
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 129/527 (24%), Positives = 197/527 (37%), Gaps = 123/527 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M+ + + PN T P VLKAC L L +H + F +F +T +D+
Sbjct: 44 MKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCFQ-----SNIFVQTAT-VDM 97
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-D 119
Y R E A F + + + L FL++ + M G+ ++
Sbjct: 98 YVKCGRLE-DAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVT 156
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
+L+ + ++ R + +L AV F + ++ +V V
Sbjct: 157 VLLLIDSILRVKSLTSL---------------GAVYSFGIRIGVHM-------DVSVANT 194
Query: 180 LIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHEWSAF------GSFDGLLS 231
LI Y+KCG++ A FD + VV ++MI Y E G DG S
Sbjct: 195 LIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFS 254
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-------- 283
+ + L + L G +VH +KLG + SD+ + T +C Y
Sbjct: 255 PDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCD--SDVCVVNTLICMYSKCGDVHSAR 312
Query: 284 ---------NVTLWNAMISGYAKNGYAEEAVKLFP------------------------- 309
W MIS YA+ GY EA+ LF
Sbjct: 313 FLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTG 372
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
KW+D Y + ++NV+V LIDMYAKCG + A F ++ VV + M
Sbjct: 373 ALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMIT 432
Query: 365 GYGLHGLGEEGWVLF----------HHI--------------------------RKHGIE 388
L+G ++ LF +HI +K+GI
Sbjct: 433 ACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGIN 492
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P HY+ +VDLL R G+ A + I +MP E + ALLSA K+
Sbjct: 493 PGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKL 539
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 140/324 (43%), Gaps = 69/324 (21%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
+V N+MI+GY K G E A +LF + + +++ +ID Y KCG +L
Sbjct: 174 DVVSWNSMIAGYLKAGEIELASELFDEMPE---------RDLVSCNAMIDGYGKCGRCEL 224
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTA----LDCSCD 246
A F+ DKDVV ++MI Y + A F +LS G A L D
Sbjct: 225 AEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIAD 284
Query: 247 LEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCRY-------------QPNVTLWN 289
L F+E+GK +H ++ +EL S LI + + C Y + N+ WN
Sbjct: 285 LGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWN 344
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+MISG A +G A EA +D++ + +D+ P
Sbjct: 345 SMISGLAIHGLAREA---------------------------LDIFVEMERMDIEP---- 373
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSN 408
++ + T +G GL EEG F + K+ I PR QHY ++DL RAG
Sbjct: 374 ---NEITFLGLLSTCSHG--GLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLE 428
Query: 409 HAFKFIMNMPIELRLSVRRALLSA 432
A I NMP E L +A+LSA
Sbjct: 429 DALGVIQNMPFEADLLAWKAILSA 452
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 105/280 (37%), Gaps = 87/280 (31%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCRY------------- 130
+ L DL F+E+GK +H ++ +EL S LI + + C Y
Sbjct: 277 SVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISH 336
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ N+ N+MISG A +G A EA+ +F + + + + N I L+ + G V
Sbjct: 337 RRNIGDWNSMISGLAIHGLAREALDIFVE-----MERMDIEPNEITFLGLLSTCSHGGLV 391
Query: 191 DLAPMFFDRTLDK-DVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
+ +F+ +K +V R I YG C DL F
Sbjct: 392 EEGQFYFESMHEKYKIVPR---IQHYG--------------------------CMIDL-F 421
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE------- 302
G++ + + E+DLL W A++S K+G+ E
Sbjct: 422 GRAGRLEDALGVIQNMPFEADLLA--------------WKAILSASMKHGHIEIGKSAAL 467
Query: 303 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
A++L P Y+ +L ++YAK G D
Sbjct: 468 RAIELAPDDSSSYV-------------LLSNIYAKAGRWD 494
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 119/501 (23%), Positives = 197/501 (39%), Gaps = 146/501 (29%)
Query: 71 AFGSFDGLLSN---EENEYGTALDCSCDLEFLE-QGKIVHGFMIKLGLELE---SDLLIS 123
AF + +LSN +N L +C + E + K VH ++KLG + + + LI+
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256
Query: 124 LTAVCRYQPNVTLR------------NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 171
+VC + N++++GY + G EEA ++ + +
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPE--------- 307
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL 229
++I + +I ++ G V A FD L+KD+V SA+I + +E A +F G+
Sbjct: 308 RSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM 367
Query: 230 ----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE------------------- 266
+ +E +AL +L + GK++H +K+G E
Sbjct: 368 HKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDI 427
Query: 267 -------------------------LESDLLISLTAVCRYQP--NVTLWNAMISGYAKNG 299
L+ +L+ + A+ P +V W++MISGYA+N
Sbjct: 428 MVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQND 487
Query: 300 YAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVIVNT 329
+E + LF KW+ YI ++ NVI+ T
Sbjct: 488 LFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGT 547
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF---------- 379
LIDMY KCG V+ A F ++K + +A+ +G ++GL E +F
Sbjct: 548 TLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 607
Query: 380 ----------------------HH----IRKHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
HH I H I+P +HY +VDLL RAG A +
Sbjct: 608 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 667
Query: 414 IMNMPIELRLSVRRALLSAWK 434
+ MP+ ++ ALL A K
Sbjct: 668 LNRMPMTPDVATWGALLGACK 688
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 119/501 (23%), Positives = 197/501 (39%), Gaps = 146/501 (29%)
Query: 71 AFGSFDGLLSN---EENEYGTALDCSCDLEFLE-QGKIVHGFMIKLGLELE---SDLLIS 123
AF + +LSN +N L +C + E + K VH ++KLG + + + LI+
Sbjct: 62 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 121
Query: 124 LTAVCRYQPNVTLR------------NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 171
+VC + N++++GY + G EEA ++ + +
Sbjct: 122 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPE--------- 172
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL 229
++I + +I ++ G V A FD L+KD+V SA+I + +E A +F G+
Sbjct: 173 RSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGM 232
Query: 230 ----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE------------------- 266
+ +E +AL +L + GK++H +K+G E
Sbjct: 233 HKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDI 292
Query: 267 -------------------------LESDLLISLTAVCRYQP--NVTLWNAMISGYAKNG 299
L+ +L+ + A+ P +V W++MISGYA+N
Sbjct: 293 MVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQND 352
Query: 300 YAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVIVNT 329
+E + LF KW+ YI ++ NVI+ T
Sbjct: 353 LFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGT 412
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF---------- 379
LIDMY KCG V+ A F ++K + +A+ +G ++GL E +F
Sbjct: 413 TLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 472
Query: 380 ----------------------HH----IRKHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
HH I H I+P +HY +VDLL RAG A +
Sbjct: 473 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 532
Query: 414 IMNMPIELRLSVRRALLSAWK 434
+ MP+ ++ ALL A K
Sbjct: 533 LNRMPMTPDVATWGALLGACK 553
>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
Length = 969
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 139/604 (23%), Positives = 233/604 (38%), Gaps = 174/604 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLL-MGPRVHGQIFSLGF----LVCYLFDGLFDRTI 55
M + APN T +L C A PSLL G ++H + +V G++ R
Sbjct: 307 MLLEGTAPNSVTFVSILSGCEA-PSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCR 365
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLL---SNEENEYGTAL---------------------- 90
+ D L+ R S+ ++ S E++ AL
Sbjct: 366 SWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVL 425
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVCRY------------QPNVTL 136
+ L L+ GK+VH +I+ GLE L L+++ A C + L
Sbjct: 426 EACGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGTVGEARKVFDRINNRSRIL 485
Query: 137 RNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIG 166
N+MI+ Y + EA+ LF + + I
Sbjct: 486 WNSMITAYQEKD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIV 544
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFG 224
S + +V V T L +MYAKCGS+ A FD + +DVV + MI Y G A
Sbjct: 545 DSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAIS 604
Query: 225 -----SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LIS 274
+G+ ++ + + L+ D L G+ +H ++ + LE+D+ LI+
Sbjct: 605 LCWAMQLEGMRPDKAT-FTSLLNACSDPNRLVDGRQIHSWIAES--RLENDIVMVTGLIT 661
Query: 275 LTAVC------------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316
+ A C ++ ++ LW +MI+ Y ++G +A++L+ + +
Sbjct: 662 MYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQV 721
Query: 317 GK---------------SEYRN---------------NVIVNTVLIDMYAKCGSVDLAPM 346
S+ R +V V ++ MY KCGS D A +
Sbjct: 722 EADRVTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFDEASI 781
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE------------------ 388
F++T KD+ + +A+ Y HG GE+ +F +R+ GIE
Sbjct: 782 VFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACSHVGL 841
Query: 389 -----------------PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
P +H++ +VDLLARAG+ + A +F+ MP+ V ALL+
Sbjct: 842 IEEGCEFFASMAELGIEPNMEHHSCLVDLLARAGHLHTAEEFLSRMPVAANTIVLTALLA 901
Query: 432 AWKI 435
A ++
Sbjct: 902 ACRV 905
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/375 (22%), Positives = 144/375 (38%), Gaps = 77/375 (20%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P+ + +++ K G EE K + + ++ ++ V + I+MY KCG +D
Sbjct: 8 PDRVMIKTLLTACTKLGALEEG-----KLIQDRLAGTQLELDIGVRNLTINMYVKCGCLD 62
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALD------- 242
A F R +DVV + MI Y S G F L E GTA +
Sbjct: 63 GAVQTFARMKRRDVVSWTVMIGAY-----SQDGKFSLSLQLFREMLLEGTAPNSVTFVSI 117
Query: 243 -CSCDL-EFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY-------------QPN 284
C+ LEQG+ +H +++ LE + ++ L+ + + CR + +
Sbjct: 118 LSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRD 177
Query: 285 VTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY-----------IGKSEYRNN 324
V W MI Y+++G +++LF P + + + + +
Sbjct: 178 VVSWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHA 237
Query: 325 VIVNTVL------------IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
++V + L I+MY KCG +D A F R +DVV + M Y G
Sbjct: 238 LVVESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKF 297
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVD-----LLARAGYSNHAFKFIMNMPIELRLSVRR 427
LF + G P + ++ L G HA ++ +E + V
Sbjct: 298 SLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHA--LVVESSLESHVVVAN 355
Query: 428 ALLSAWKIPMQQWEN 442
+LL + + WE+
Sbjct: 356 SLLGMYS-RCRSWED 369
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 131/330 (39%), Gaps = 62/330 (18%)
Query: 111 KLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 170
L L+L ++L+ TA PN +++SG E+ + + + +S
Sbjct: 298 SLSLQLFREMLLEGTA-----PNSVTFVSILSGCEAPSLLEQG-----RQIHALVVESSL 347
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL---HEWSAFGSFD 227
++V+V L+ MY++C S + + FDR +D V S +I+ H A +
Sbjct: 348 ESHVVVANSLLGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYR 407
Query: 228 GLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVCRY 281
+L + L+ L L+ GK+VH +I+ GLE L L+++ A C
Sbjct: 408 SMLHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGT 467
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+ LWN+MI+ Y + EA+ LF
Sbjct: 468 VGEARKVFDRINNRSRILWNSMITAYQEKD-PHEALHLFREMQPEGVSPDRITFMTVLNA 526
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ + I S + +V V T L +MYAKCGS+ A FD + +DVV
Sbjct: 527 CVNAADLENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSW 586
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ M Y GE L ++ G+ P
Sbjct: 587 NNMIAAYVQGRDGEGAISLCWAMQLEGMRP 616
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 102/465 (21%), Positives = 185/465 (39%), Gaps = 95/465 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLL-MGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLD 59
M + APN T +L C A PSLL G ++H + L +V
Sbjct: 102 MLLEGTAPNSVTFVSILSGCEA-PSLLEQGRQIHALVVE---------SSLESHVVVANS 151
Query: 60 LYHLWSRT---EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
L ++SR E S +F + + + + + + GK L ++L
Sbjct: 152 LLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGA-----YSQDGKF------SLSIQL 200
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
++L+ TA PN +++SG E+ ++ ++ + E ++ V
Sbjct: 201 FREMLLEGTA-----PNSVTFVSILSGCEAPSLLEQGRQIHALVVESSL---ESHLDIGV 252
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEE 234
+ I+MY KCG +D A F R +DVV + MI Y S G F L E
Sbjct: 253 LNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAY-----SQDGKFSLSLQLFREM 307
Query: 235 NEYGTALD--------CSCDL-EFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR-Y 281
GTA + C+ LEQG+ +H +++ LE + ++ L+ + + CR +
Sbjct: 308 LLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSW 367
Query: 282 QPNVTL-----------WNAMISGYAK-NGYAEEAVKLF---------PKWMDYYI---- 316
+ + +L W+ +I ++ + + +A+ L+ PK + +
Sbjct: 368 EDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEA 427
Query: 317 ---------GKSEYRNNV-------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
GK + + + +V L++MYAKCG+V A FDR ++ ++ +
Sbjct: 428 CGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGTVGEARKVFDRINNRSRILWN 487
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+M Y E LF ++ G+ P + V++ A
Sbjct: 488 SMITAYQEKD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAA 531
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 159/396 (40%), Gaps = 83/396 (20%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAV 154
DL LEQ K +H +IK L I L N +I+ Y K A+
Sbjct: 87 DLSTLEQTKQIHAHIIKT--HFHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNAL 144
Query: 155 KLFPKW--MDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-------DLAPMFFDRTLDKDV 205
++ + MD+ + +N + +VL CG V ++ + LD+DV
Sbjct: 145 NVYAQLRKMDFEV------DNFMAPSVL----KACGQVSWTQLGKEIHGFVLKKGLDRDV 194
Query: 206 VMRSAMIVGYGLHEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
+ +A+++ YG + FD ++ + + D+ K H
Sbjct: 195 FVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDM----YAKCGH------ 244
Query: 264 GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------- 316
L L L LT Q V W AMI+G ++ EE KLF + + I
Sbjct: 245 -LGLARQLFNGLT-----QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITM 298
Query: 317 -GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
K + I+NT L+DMYAKCG ++ A F + +D+ M +A+ G+ +HG GEE
Sbjct: 299 LNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEA 358
Query: 376 WVLFHHIRKHGIEPRH------------------------------------QHYARVVD 399
+F + + G++P +HY +VD
Sbjct: 359 LDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVD 418
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LL RAG + A + I +MPI+ V AL++A ++
Sbjct: 419 LLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRL 454
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 169/419 (40%), Gaps = 108/419 (25%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------ 130
Y + L + +E GK +H + ++G+ L L++L +C
Sbjct: 4 YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKS 168
+ N+ L N MI GYA NG E A+ L+ + DY + GK
Sbjct: 64 KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123
Query: 169 EYRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-- 218
+++ +V V LIDMYAKCG V+ A FD+ ++DVV ++M+ Y +
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183
Query: 219 -----EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
+F+G L E + ++ S D L QGK +HG+ + G E +
Sbjct: 184 PDESLALCRVMAFNG-LKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKT 242
Query: 274 SL---------TAVCRY------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 318
+L V R + V WNAMI+GYA +G+A EA+ LF
Sbjct: 243 ALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLF---------- 292
Query: 319 SEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
E + V+ + + + + A C +G GL EG +
Sbjct: 293 KEMKGKVLPDHITFVGVLAAC--------------------------SHG--GLLNEGKM 324
Query: 378 LFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
F I I P QHY ++DLL G A+K IM M +E V ALL + KI
Sbjct: 325 HFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKI 383
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 45/198 (22%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVC------- 44
+ P+ T P VLKAC AL ++ G ++H + G + C
Sbjct: 98 LVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESAR 157
Query: 45 YLFDGLFDRTIV----FLDLYHLWSRTEWS----AFGSFDGLLSNEENEYGTALDCSCDL 96
+FD + +R +V L Y + + S +F+GL E + ++ S D
Sbjct: 158 QVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTE-GTFVISIAASADN 216
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISL---------TAVCRY------QPNVTLRNAMI 141
L QGK +HG+ + G E + +L V R + V NAMI
Sbjct: 217 GLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMI 276
Query: 142 SGYAKNGYAEEAVKLFPK 159
+GYA +G+A EA+ LF +
Sbjct: 277 TGYAMHGHANEALDLFKE 294
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 161/369 (43%), Gaps = 76/369 (20%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK 146
G+ L + E L+ GK +H +++ +++ + NA+IS YAK
Sbjct: 282 GSVLSACANRESLKLGKQIHAHIVRADVDIAG----------------AVGNALISMYAK 325
Query: 147 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
+G E A ++ G NVI T L+D Y K G +D A FD +DVV
Sbjct: 326 SGAVEVAHRIVE-----ITGTPSL--NVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVV 378
Query: 207 MRSAMIVGYGLHEWSAFGSFDGLLSN-------------EENEYGTA--LDCSCDLEFLE 251
+AMIVGY +GL+S+ + N Y A L L L+
Sbjct: 379 AWTAMIVGYAQ---------NGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLD 429
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
GK +H I+L E+ S V++ NA+I+ Y+++G ++A K+F
Sbjct: 430 HGKQLHAVAIRLE-EVSS---------------VSVGNALITMYSRSGSIKDARKIFNHI 473
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR----TLDKDVVMRSAMTVGYG 367
Y + + T +I A+ G + A F++ L D + +
Sbjct: 474 CSY--------RDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACT 525
Query: 368 LHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
GL E+G F+ ++ H IEP HYA ++DLL RAG A+ FI NMPIE +
Sbjct: 526 HVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAW 585
Query: 427 RALLSAWKI 435
+LLS+ ++
Sbjct: 586 GSLLSSCRV 594
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 55/338 (16%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138
+S + + L + L+ GK VH F++KLG +S + V + N
Sbjct: 141 ISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLG---QSGV-------------VPVAN 184
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
++++ YAK G + A +F + ++ NT +I M+ + DLA FD
Sbjct: 185 SLLNMYAKCGDSVMAKVVFDRM--------RLKDTSTWNT-MISMHMQFCQFDLALALFD 235
Query: 199 RTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN-----EENEYGTALDCSCDLEFLE 251
+ D D+V +++I GY + A +F +L + ++ G+ L + E L+
Sbjct: 236 QMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLK 295
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
GK +H +++ +++ + NA+IS YAK+G E A ++
Sbjct: 296 LGKQIHAHIVRADVDIAG----------------AVGNALISMYAKSGAVEVAHRIVE-- 337
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
G NVI T L+D Y K G +D A FD +DVV +AM VGY +GL
Sbjct: 338 ---ITGTPSL--NVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGL 392
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409
+ VLF + + G +P + A V+ +++ +H
Sbjct: 393 ISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDH 430
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 29/164 (17%)
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
G+ +H +IK GL RY V L N +++ Y K G + +A +LF
Sbjct: 31 GRCIHARIIKHGL--------------RYL-GVFLTNNLLNLYVKTGSSSDAHRLF---- 71
Query: 313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
D K+ + N I++ +AK G++D A FD D V + M VGY GL
Sbjct: 72 DEMPLKTTFSWNTILSA-----HAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLF 126
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-----GYSNHAF 411
+ F + GI P + V+ A A G H+F
Sbjct: 127 KSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSF 170
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 137/590 (23%), Positives = 221/590 (37%), Gaps = 172/590 (29%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLV---------CYLFDG---LFDRT 54
T P++LKAC + L G +HG G F+V C +G LFDR
Sbjct: 60 TFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119
Query: 55 IVFLDLYHLWSR--TEWSAFGSFD------------GLLSNEENEYGTALDCSCDLEFLE 100
V D+ W+ + +S G G+++N + AL D F++
Sbjct: 120 YVRNDVVS-WNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYT-FAAALQACEDSSFIK 177
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLRNAMISGYA 145
G +H ++K G L+ ++ L+++ P ++ N+M++G+
Sbjct: 178 LGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFI 237
Query: 146 KNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNNVI 175
+NG EA++ F K + Y K+ + +N++
Sbjct: 238 QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNIL 297
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL---- 229
V LIDMYAKC + FD KD++ + GY ++ A L
Sbjct: 298 VGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEG 357
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ------- 282
+ + G+ L L L + K +HG+ I+ GL SD ++ T + Y
Sbjct: 358 MDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL---SDPVLQNTIIDVYGECGIIDY 414
Query: 283 ----------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------------------- 313
+V W +MIS Y NG A +A+++F +
Sbjct: 415 AVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCS 474
Query: 314 ------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
+ I K I NT L+DMYA+CGSV+ A F T ++++++ +A
Sbjct: 475 LSTLKKGKEIHGFIIRKGFILEGSISNT-LVDMYARCGSVEDAYKIFTCTKNRNLILWTA 533
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------------ 391
M YG+HG GE LF ++ I P H
Sbjct: 534 MISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEY 593
Query: 392 ------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDLL R A++ + +M E V ALL A +I
Sbjct: 594 QLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRI 643
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 112/279 (40%), Gaps = 58/279 (20%)
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALD 242
MY KCGSV A M FD+ ++ + +AM+ GY + A G+ + + E G + D
Sbjct: 1 MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGY-VSNGEALGALE--MYREMRHLGVSFD 57
Query: 243 C--------SCDL-EFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR---------- 280
+C + E L G +HG IK G + + L++L A C
Sbjct: 58 SYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117
Query: 281 ---YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-------------- 323
+ +V WN++IS Y+ NG EA+ LF + + + + Y
Sbjct: 118 RMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIK 177
Query: 324 ----------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
+V V L+ MY + G + A + F KD+V ++M G+
Sbjct: 178 LGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFI 237
Query: 368 LHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
+GL E F+ ++ ++P ++ R GY
Sbjct: 238 QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGY 276
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 165/403 (40%), Gaps = 105/403 (26%)
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYA 145
QG+ VH IK G +++ ++ ++ L C+ Q + NA+I+
Sbjct: 369 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 428
Query: 146 KNGYAEEAVKLFPKWM-------DYYIG-----------------------KSEYRNNVI 175
+NG+ ++ + F + + D+ G KS ++
Sbjct: 429 QNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF 488
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS------FDGL 229
V + ++DMY KCG +D A DR + VV +A++ G+ L++ S D
Sbjct: 489 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG 548
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVCRYQPNVT 286
L + + T LD +L +E GK +HG +IK L E S L+ + A C P+
Sbjct: 549 LKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSL 608
Query: 287 L------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLID 333
L WNAMI GYA +G EA+++F + + NV+ N +
Sbjct: 609 LVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQ---------KENVVPNHATFVA 659
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQ 392
+ C V GL ++G FH + H +EP+ +
Sbjct: 660 VLRACSHV----------------------------GLFDDGCRYFHLMTTHYKLEPQLE 691
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H+A +VD+L R+ A KFI +MP + + + LLS KI
Sbjct: 692 HFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKI 734
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 49/180 (27%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
YG+ L L LE G +VH +IK GL SD ++ T V Y
Sbjct: 455 YGSVLKACAALRSLEYGLMVHDKVIKSGLG--SDAFVASTVVDMYCKCGIIDEAQKLHDR 512
Query: 131 --QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY------------------------- 163
V NA++SG++ N +EEA K F + +D
Sbjct: 513 IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 572
Query: 164 -----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
I K E ++ +++ L+DMYAKCG + + + F++ +D V +AMI GY LH
Sbjct: 573 KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALH 632
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 132/354 (37%), Gaps = 85/354 (24%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYYI----------------- 165
P+V NA++SGY + G +E+V LF P + +
Sbjct: 112 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 171
Query: 166 ----GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
K+ +V + L+DMY KC S+D A FF +++ V A I G +E
Sbjct: 172 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQY 231
Query: 222 AFG-----SFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
G L L + Y +A + L G+ +H IK + SD ++
Sbjct: 232 VRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIK--NKFSSDRVVGT 289
Query: 276 TAVCRYQ---------------PNVTL--WNAMISGYAKNGYAEEAVKLF---------- 308
V Y PN T+ NAM+ G + G EA+ LF
Sbjct: 290 AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRF 349
Query: 309 ------------PKWMDYYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+ Y+ G KS + ++ VN ++D+Y KC ++ A + F
Sbjct: 350 DVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF 409
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
KD V +A+ +G ++ + F+ + + G++P Y V+ A
Sbjct: 410 QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACA 463
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 104/268 (38%), Gaps = 52/268 (19%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
R+ V NT+L Y+ G + A FD D DVV +A++ GY G+ + S +
Sbjct: 81 RDTVSWNTMLT-AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139
Query: 228 GL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY 281
+S + + L LE L G VH +K GLE++ L+ + CR
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------ 317
+ N W A I+G +N ++LF + +G
Sbjct: 200 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 259
Query: 318 ------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K+++ ++ +V T ++D+YAK S+ A F + V
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+AM VG GLG E LF + + I
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSI 347
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 78/197 (39%), Gaps = 47/197 (23%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTIVF 57
P+ T VLKAC AL SL G VH ++ G F+ + D G+ D
Sbjct: 450 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 509
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENE--------------------YGTALDCSCDLE 97
D W+A G N+E+E + T LD +L
Sbjct: 510 HDRIGGQQVVSWNAI--LSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 567
Query: 98 FLEQGKIVHGFMIK---LGLELESDLLISLTAVCRYQPNVTLR------------NAMIS 142
+E GK +HG +IK L E S L+ + A C P+ L NAMI
Sbjct: 568 TIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMIC 627
Query: 143 GYAKNGYAEEAVKLFPK 159
GYA +G EA+++F +
Sbjct: 628 GYALHGLGVEALRMFER 644
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
R+ V NT+L Y+ G + A FD D DVV +A+ GY G+ +E LF
Sbjct: 81 RDTVSWNTMLT-AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139
Query: 382 IRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRL------------S 424
+ + G+ P +A ++ + G HA + I++R S
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199
Query: 425 VRRALLSAWKIPMQQWENMLQTIRGIDEGEK 455
+ AL + +P + W + I G + E+
Sbjct: 200 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQ 230
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 144/349 (41%), Gaps = 90/349 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV-----MRSAMIVGYGLHEWSAFGSFD--G 228
V+ +DMY K G + LA F +++VV M +A++ G L A+ G
Sbjct: 156 VSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAG 215
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVCRYQ--- 282
L N + C+ + +L G+ HGF++K G E++ +L S+ CR
Sbjct: 216 GLPNVVSACAFFNACAGAM-YLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKA 274
Query: 283 ---------PNVTLWNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG--------- 317
N W +M++ YA+NG EEA + + D+ +
Sbjct: 275 RAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGL 334
Query: 318 --------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+S N+ V + L+DMY KCG V+ A F T +++V +AM
Sbjct: 335 LGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMI 394
Query: 364 VGYG------------------------------------LHGLGEEGWVLFHHIR-KHG 386
GY GL ++G+ LF +R + G
Sbjct: 395 GGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFG 454
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
IEPR +HYA VVDLL RAG A++ I MP+ +SV ALL A K+
Sbjct: 455 IEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKM 503
>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like, partial [Brachypodium distachyon]
Length = 735
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 165/397 (41%), Gaps = 83/397 (20%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELE---SDLLI-------SLTAVCRYQPNVTLRN-----A 139
+L + + G+ VHG+ IK +EL+ ++ L+ SL C + +RN A
Sbjct: 290 ELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNA 349
Query: 140 MISGYAKNGYAEEA-------------------VKLFP-----------KWMDYYIGKSE 169
MI+ +NG EA V L P K + + ++
Sbjct: 350 MIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTG 409
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD-- 227
++ ++ LIDMYAKCG + LA FD + +KD V + +I+GY WS F S +
Sbjct: 410 LMFDLFISNALIDMYAKCGQLRLAQSIFDLS-EKDDVSYNTLILGYSQSPWS-FESLNLF 467
Query: 228 GLLSNEENEYGT-----ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
LS+ EY AL +L +QGK +HG +++ L
Sbjct: 468 KQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLS---------------- 511
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
+ L N ++ Y K G + A K+F + + + NN+I+ Y G +D
Sbjct: 512 NHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVAS---WNNMIMG------YGMHGQID 562
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
A FD D V + GL E G F H+ +EP+ HYA +V
Sbjct: 563 AAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQMHYACMV 622
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLL R+G + + I++MP V ALL A +I
Sbjct: 623 DLLGRSGQLTESVEIILDMPFHANSDVWGALLGACRI 659
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 119/316 (37%), Gaps = 90/316 (28%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR----------------NAMIS 142
L+ GK +H + I+ GL DL IS + Y LR N +I
Sbjct: 395 LKTGKQIHAWSIRTGLMF--DLFISNALIDMYAKCGQLRLAQSIFDLSEKDDVSYNTLIL 452
Query: 143 GYAKNGYAEEAVKLFPKWMDYYI----------------------GKSEY--------RN 172
GY+++ ++ E++ LF + I GK + N
Sbjct: 453 GYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSN 512
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL- 229
+ + L+ +Y K G +D A F+R +KDV + MI+GYG+H +AF FD +
Sbjct: 513 HPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMK 572
Query: 230 ---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-------DLL------- 272
++ + Y L +E+GK M+ LE + DLL
Sbjct: 573 DHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQMHYACMVDLLGRSGQLT 632
Query: 273 --ISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA-------VKLFPKWMDYYIGKSEYRN 323
+ + + N +W A++ +G E A +L P+ YY
Sbjct: 633 ESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYY-------- 684
Query: 324 NVIVNTVLIDMYAKCG 339
+VL +MYA+ G
Sbjct: 685 -----SVLRNMYAEAG 695
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 44/264 (16%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV-LIDMYAKCG-------S 189
N+++S + N ++A + M R+ V VN L+ + CG
Sbjct: 146 NSLVSSFLANKMFDDARQALLSMM---------RSGVPVNVASLVSVVPACGVEQEGGFG 196
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNEENEYGTALDCSCDL 247
+ + + LD V + +A++ YG H ++ F+G+ E + +A+ C
Sbjct: 197 LGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGC---- 252
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCR--YQPNVTLWNAMISGYAKNGYAEEAV 305
FL G L D+L + + P ++++ + GY +
Sbjct: 253 -FLNAG-------------LYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFD--- 295
Query: 306 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ + Y K ++ V L+DMYAK GS++ A F++ ++VV +AM
Sbjct: 296 --LGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIAN 353
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEP 389
+G E + L ++K G P
Sbjct: 354 LVQNGAESEAFGLVIKMQKDGECP 377
>gi|413923618|gb|AFW63550.1| hypothetical protein ZEAMMB73_399779 [Zea mays]
Length = 1118
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 111/492 (22%), Positives = 185/492 (37%), Gaps = 141/492 (28%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTE 68
+G T L+L+AC ALPSL G VH + C + F T + ++SR
Sbjct: 565 DGFTLSLLLRACTALPSLTHGRAVH----AAAVRSCTASEDAFVATAIV----QMYSRC- 615
Query: 69 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 128
G ++ N YG LE+
Sbjct: 616 --------GDMAGAINAYG----------MLEK--------------------------- 630
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM--------------------------- 161
P++ LR ++++GY +NG AEEA++ F + +
Sbjct: 631 ---PDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRK 687
Query: 162 -----DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
Y + S + +VN VL Y K G + + F+ D+DV+ S MI GY
Sbjct: 688 GQACHAYVVRNSLSYDLALVNAVL-GFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYV 746
Query: 217 LH--EWSAFGSFDGLLSNEENEYGTALDC---SCDLEF-LEQGKIVHGFMIKLGLELE-- 268
H + F + ++ L +C L E+GK +H + +G ELE
Sbjct: 747 QHGDAHTGFRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELG 806
Query: 269 -SDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEA----------- 304
+ L+ + C + +V W A+I G +N E+
Sbjct: 807 VATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLND 866
Query: 305 --------VKLFPKWMDY-----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
VK+ ++ Y+ ++ + NN V L+D+Y+KCG +D A
Sbjct: 867 HVPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAV 926
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
F+ T +KD+V+ +M GYG HGLG+E L+ + I+P + + V+ + +G
Sbjct: 927 RVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSG 986
Query: 406 YSNHAFKFIMNM 417
+ +M
Sbjct: 987 LVQEGIQIFDSM 998
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
Y+ ++ + NN V L+D+Y+KCG +D A F+ T +KD+V+ +MI GYG H
Sbjct: 896 YLVRNGFNNNAFVAAALLDLYSKCGDLDSAVRVFEGTTEKDIVVWGSMIAGYGAH----- 950
Query: 224 GSFDGLLSNEENEYGTALDCSC---DLEFLEQ-GKIVHGFMIKLGLELESDLLISLTAVC 279
GL Y + S ++ FL H +++ G++ + S+T V
Sbjct: 951 ----GLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSGLVQEGIQ----IFDSMTQVF 1002
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
PN +AM+ + G +EA+++
Sbjct: 1003 GVVPNAEHQSAMVDLLGRAGELQEAIRVI 1031
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 44/191 (23%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM----------------------------- 312
+P++ L ++++GY +NG AEEA++ F + +
Sbjct: 630 KPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQ 689
Query: 313 ---DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
Y + S + +VN VL Y K G + + F+ D+DV+ S M GY H
Sbjct: 690 ACHAYVVRNSLSYDLALVNAVL-GFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQH 748
Query: 370 GLGEEGWVLFHHIRKHGIEPRH-------QHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
G G+ ++ + K ++P Q A VVD A G H + +++ EL
Sbjct: 749 GDAHTGFRMYREMVKARVQPNSVTLVSVLQACALVVD--AEEGKRLH--RVAVSIGCELE 804
Query: 423 LSVRRALLSAW 433
L V AL+ +
Sbjct: 805 LGVATALVDMY 815
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 125/462 (27%), Positives = 196/462 (42%), Gaps = 99/462 (21%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLD--LYHLWSRTEWSAF 72
LVLKAC L + G ++HG L + + VFL L L+ R
Sbjct: 127 LVLKACSRLGLIKEGMQIHG-----------LLGRMEIGSDVFLQNCLMCLYLRCGCLGI 175
Query: 73 GS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 130
FD ++ + + + +D G + HG M+K EL +
Sbjct: 176 ARQLFDRMMKRDSVSFNSMID----------GYVKHG-MVKSAREL-------FDVMPME 217
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
Q N+ N+MISGYA+ +EE +++ + + + + ++I +ID KCG +
Sbjct: 218 QKNLISWNSMISGYAR---SEEGLRV-----AWELFEEMPKRDLISWNSMIDGCVKCGKM 269
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYG-LHEWS-AFGSFDGLLSNEENEYGTALDCSCDLE 248
+ A F++ +DVV + M+ GY L E A G FD + + + C+
Sbjct: 270 ENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERD------VISCNA--- 320
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
+ G + +G +++ L D+L + N TL +S A+ G+ +E V L
Sbjct: 321 -MMAGYVQNGHLME-ALNFFHDMLSRKEL---FPDNATLL-ITLSAIAQLGHFDEGVALH 374
Query: 309 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
YI + + + + LIDMYAKCGS+D A F+ DK + +A+ G +
Sbjct: 375 -----CYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAI 429
Query: 369 HGLGEEGWVLFHHIRK------------------------------------HGIEPRHQ 392
HGLGE + LF + K H +EP+ Q
Sbjct: 430 HGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQ 489
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
HY +VD+L RAG+ A KF+ MPIE V R LLSA +
Sbjct: 490 HYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACR 531
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 145/595 (24%), Positives = 220/595 (36%), Gaps = 174/595 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-----VCYLFDGL---FDRTIV--F 57
PN T +L AC L +G VHG G V G FD ++
Sbjct: 152 PNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLL 211
Query: 58 LDLYHLWSRTEWSAFGS--------------FDGLLSNEEN----EYGTALDCSCDLEFL 99
DL + + W+A S F +L +E A+ +L L
Sbjct: 212 FDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSL 271
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR-----------------NAMIS 142
+ GK +H IK E DL I + Y N +L N+MIS
Sbjct: 272 KLGKQIHQLAIKF--EFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMIS 329
Query: 143 GYAKNGYAEEAVKLF-------------------------------PKWMDYYIGKSEYR 171
YA G EEA+ LF K + ++ KS R
Sbjct: 330 AYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMR 389
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGL 229
+ + L+ MY + V+ FDR D++ + MI+ + A F+ +
Sbjct: 390 IDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERM 449
Query: 230 LSNE--ENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL---------- 275
+E N Y + L D+ L+ G+ +HG+++K +E+ L +L
Sbjct: 450 RESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDE 509
Query: 276 -TAVCRYQ--PNVTL--WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330
TA ++ P+ L WNAMI+ Y KN A +A+ LF + I ++E + I+N +
Sbjct: 510 ATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHR----MISEAEPNSVTIINVL 565
Query: 331 -----------------------------------LIDMYAKCGSVDLAPMFFDRTLDKD 355
I MYA+CGS+ A F ++
Sbjct: 566 SSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRN 625
Query: 356 VVMRSAMTVGYGLHGLG-----------------------------------EEGWVLFH 380
++ +AM GYG++G G E G LFH
Sbjct: 626 IISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFH 685
Query: 381 H-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
++ + P HY+ +VDLLAR G + A +FI +MPIE SV RALLS+ +
Sbjct: 686 SMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCR 740
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 128/586 (21%), Positives = 220/586 (37%), Gaps = 147/586 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQI-------------------FSLGF 41
M+ V PN T PLVLKAC A ++ G +H I GF
Sbjct: 44 MESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGF 103
Query: 42 L--VCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF---------DGLLSNEENEYGTAL 90
+ +FD + DR +V + ++ W + + L N L
Sbjct: 104 VEDARCVFDAMSDRDVVLWNAM-VYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLL 162
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-------CRYQP---------NV 134
C E L G+ VHG+ ++ G+ +S+ ++ + R P N+
Sbjct: 163 ACEGASE-LRLGRGVHGYCLRNGM-FDSNPHVATALIGFYLRFDMRVLPLLFDLMVVRNI 220
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS---- 168
NAMISGY G +A++LF + + +GK
Sbjct: 221 VSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQL 280
Query: 169 ----EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS 221
E+ ++ + L++MY+ GS++ + F+ ++D + ++MI Y G HE
Sbjct: 281 AIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHE-E 339
Query: 222 AFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LI 273
A F +G+ +E C L +GK +H +IK G+ +++ L L+
Sbjct: 340 AMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALL 399
Query: 274 S----LTAVCRYQP--------NVTLWNAMISGYAKNGYAEEAVKLFPKW---------- 311
S L V Q ++ WN MI A+N +A +LF +
Sbjct: 400 SMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSY 459
Query: 312 --------------MDY------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+D+ Y+ K N + T L DMY CG A F+
Sbjct: 460 TIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGC 519
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR-------- 403
D+D++ +AM Y + + +LFH + I + ++++L+
Sbjct: 520 PDRDLISWNAMIASYVKNNQAHKALLLFHRM----ISEAEPNSVTIINVLSSFTHLATLP 575
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI--PMQQWENMLQTI 447
G S HA+ + L LS+ A ++ + +Q EN+ +T+
Sbjct: 576 QGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTL 621
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 92/406 (22%), Positives = 166/406 (40%), Gaps = 84/406 (20%)
Query: 125 TAVCRYQPNVTLRNAMISGYA------------------KNGYAEEAVKLFPKWMDYYIG 166
+V ++Q N+ A++S Y K A+ AV+ K + I
Sbjct: 22 NSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER-GKSIHRSIQ 80
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAF 223
++ ++V V T ++D Y KCG V+ A FD D+DVV+ +AM+ VG+G +E +
Sbjct: 81 GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 140
Query: 224 ----GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV- 278
+ L N L C E L G+ VHG+ ++ G+ +S+ ++ +
Sbjct: 141 LVREMGRENLRPNSRTMVALLLACEGASE-LRLGRGVHGYCLRNGM-FDSNPHVATALIG 198
Query: 279 ------CRYQP---------NVTLWNAMISGYAKNGYAEEAVKLFPKWM----------- 312
R P N+ WNAMISGY G +A++LF + +
Sbjct: 199 FYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTM 258
Query: 313 -----------DYYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+GK E+ ++ + L++MY+ GS++ + F+ +
Sbjct: 259 LVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPN 318
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR------AGYS 407
+D + ++M Y G EE LF ++ G++ + ++ + G S
Sbjct: 319 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 378
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWK--IPMQQWENMLQTIRGID 451
HA M I+ L ALLS + ++ + + ++G+D
Sbjct: 379 LHAHVIKSGMRIDASLG--NALLSMYTELNCVESVQKIFDRMKGVD 422
>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
Length = 703
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 144/349 (41%), Gaps = 90/349 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV-----MRSAMIVGYGLHEWSAFGSFD--G 228
V+ +DMY K G + LA F +++VV M +A++ G L A+ G
Sbjct: 156 VSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAG 215
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVCRYQ--- 282
L N + C+ + +L G+ HGF++K G E++ +L S+ CR
Sbjct: 216 GLPNVVSACAFFNACAGAM-YLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKA 274
Query: 283 ---------PNVTLWNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG--------- 317
N W +M++ YA+NG EEA + + D+ +
Sbjct: 275 RAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGL 334
Query: 318 --------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+S N+ V + L+DMY KCG V+ A F T +++V +AM
Sbjct: 335 LGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMI 394
Query: 364 VGYG------------------------------------LHGLGEEGWVLFHHIR-KHG 386
GY GL ++G+ LF +R + G
Sbjct: 395 GGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFG 454
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
IEPR +HYA VVDLL RAG A++ I MP+ +SV ALL A K+
Sbjct: 455 IEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKM 503
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 165/403 (40%), Gaps = 105/403 (26%)
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYA 145
QG+ VH IK G +++ ++ ++ L C+ Q + NA+I+
Sbjct: 369 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 428
Query: 146 KNGYAEEAVKLFPKWM-------DYYIG-----------------------KSEYRNNVI 175
+NG+ ++ + F + + D+ G KS ++
Sbjct: 429 QNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF 488
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS------FDGL 229
V + ++DMY KCG +D A DR + VV +A++ G+ L++ S D
Sbjct: 489 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG 548
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVCRYQPNVT 286
L + + T LD +L +E GK +HG +IK L E S L+ + A C P+
Sbjct: 549 LKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSL 608
Query: 287 L------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLID 333
L WNAMI GYA +G EA+++F + + NV+ N +
Sbjct: 609 LVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQ---------KENVVPNHATFVA 659
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQ 392
+ C V GL ++G FH + H +EP+ +
Sbjct: 660 VLRACSHV----------------------------GLFDDGCRYFHLMTTHYKLEPQLE 691
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H+A +VD+L R+ A KFI +MP + + + LLS KI
Sbjct: 692 HFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKI 734
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 49/180 (27%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
YG+ L L LE G +VH +IK GL SD ++ T V Y
Sbjct: 455 YGSVLKACAALRSLEYGLMVHDKVIKSGLG--SDAFVASTVVDMYCKCGIIDEAQKLHDR 512
Query: 131 --QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY------------------------- 163
V NA++SG++ N +EEA K F + +D
Sbjct: 513 IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 572
Query: 164 -----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
I K E ++ +++ L+DMYAKCG + + + F++ +D V +AMI GY LH
Sbjct: 573 KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALH 632
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 132/354 (37%), Gaps = 85/354 (24%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYYI----------------- 165
P+V NA++SGY + G +E+V LF P + +
Sbjct: 112 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 171
Query: 166 ----GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
K+ +V + L+DMY KC S+D A FF +++ V A I G +E
Sbjct: 172 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQY 231
Query: 222 AFG-----SFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
G L L + Y +A + L G+ +H IK + SD ++
Sbjct: 232 VRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIK--NKFSSDRVVGT 289
Query: 276 TAVCRYQ---------------PNVTL--WNAMISGYAKNGYAEEAVKLF---------- 308
V Y PN T+ NAM+ G + G EA+ LF
Sbjct: 290 AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRF 349
Query: 309 ------------PKWMDYYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+ Y+ G KS + ++ VN ++D+Y KC ++ A + F
Sbjct: 350 DVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF 409
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
KD V +A+ +G ++ + F+ + + G++P Y V+ A
Sbjct: 410 QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACA 463
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 104/268 (38%), Gaps = 52/268 (19%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
R+ V NT+L Y+ G + A FD D DVV +A++ GY G+ + S +
Sbjct: 81 RDTVSWNTMLT-AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139
Query: 228 GL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY 281
+S + + L LE L G VH +K GLE++ L+ + CR
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------ 317
+ N W A I+G +N ++LF + +G
Sbjct: 200 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 259
Query: 318 ------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K+++ ++ +V T ++D+YAK S+ A F + V
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+AM VG GLG E LF + + I
Sbjct: 320 NAMMVGLVRAGLGIEAMGLFQFMIRSSI 347
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 78/197 (39%), Gaps = 47/197 (23%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTIVF 57
P+ T VLKAC AL SL G VH ++ G F+ + D G+ D
Sbjct: 450 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 509
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENE--------------------YGTALDCSCDLE 97
D W+A G N+E+E + T LD +L
Sbjct: 510 HDRIGGQQVVSWNAI--LSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 567
Query: 98 FLEQGKIVHGFMIK---LGLELESDLLISLTAVCRYQPNVTLR------------NAMIS 142
+E GK +HG +IK L E S L+ + A C P+ L NAMI
Sbjct: 568 TIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMIC 627
Query: 143 GYAKNGYAEEAVKLFPK 159
GYA +G EA+++F +
Sbjct: 628 GYALHGLGVEALRMFER 644
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
R+ V NT+L Y+ G + A FD D DVV +A+ GY G+ +E LF
Sbjct: 81 RDTVSWNTMLT-AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139
Query: 382 IRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRL------------S 424
+ + G+ P +A ++ + G HA + I++R S
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199
Query: 425 VRRALLSAWKIPMQQWENMLQTIRGIDEGEK 455
+ AL + +P + W + I G + E+
Sbjct: 200 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQ 230
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/467 (25%), Positives = 172/467 (36%), Gaps = 140/467 (29%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL---------TAVCRY------Q 131
G LD DL+ L + VH +I L S L + L A R +
Sbjct: 47 GQVLDTYPDLKTL---RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPE 103
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWM------DYY----------------IGKSE 169
NV + N MI Y NG+ E +++F D+Y IGK
Sbjct: 104 RNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKI 163
Query: 170 Y--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
+ + + V L+ MY KCG + A + D +DVV ++++ GY
Sbjct: 164 HGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYA----- 218
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH--GFMIKL-----GLELESDLLIS 274
+ + AL+ ++E + KI H G M L E+ + +
Sbjct: 219 -----------QNQRFDDALEVCREMESV---KISHDAGTMASLLPAVSNTTTENVMYVK 264
Query: 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------- 309
+ ++ WN MI Y KN EAV+L+
Sbjct: 265 DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTS 324
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
K + YI + + N+++ LIDMYAKCG +D A F+ +DVV +AM
Sbjct: 325 ALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMIS 384
Query: 365 GYGLHGLGEEGWVLFHHIRKHG------------------------------------IE 388
YG G G + LF ++ G I
Sbjct: 385 AYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 444
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
PR +H A +VDLL RAG A+KFI MP+E V ALL A ++
Sbjct: 445 PRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRV 491
>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
Length = 590
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 127/506 (25%), Positives = 197/506 (38%), Gaps = 118/506 (23%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V PNG T +L+AC +L L + VHGQI GF + L++Y+ S
Sbjct: 111 VYPNGFTFTFLLRACESLRRLFLCRCVHGQIVRCGFGSDVVVQN------ALLNVYYKCS 164
Query: 66 --------RTEWSAFGSFDGLLSNE-ENEYGTALDCSCDLEFLE---QGKIVHGFMIKLG 113
R + + D + N Y + D + +E E + +V I
Sbjct: 165 DPGDVGIARQVFDEMANRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNVVSWNTIVAA 224
Query: 114 LELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 171
D+ +S AV P + N MISGYA +G E A LF MD R
Sbjct: 225 FTRAGDM-VSARAVFDRMPIRDAISWNLMISGYATSGNVESAWSLF-DIMD--------R 274
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
+V+ T ++ YAK G +D A + FD+ DK++V +AMI GY
Sbjct: 275 KDVVSWTAMVSAYAKIGELDSARVLFDQMPDKNLVSWNAMITGY---------------- 318
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
N Y AL C+ LE R+ P+ ++
Sbjct: 319 NHNLRYDDAL-CTFQQMMLEG---------------------------RFMPDEATLVSV 350
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+S A+ G E + W+ YI KS V + L+DM+AKCG V A + F++
Sbjct: 351 VSACAQLGSVE-----YCNWISSYISKSNTHITVALGNALVDMFAKCGDVGRAHLVFNKM 405
Query: 352 LDKDVVMRSAMTVGYGLHG-----------------------------------LGEEGW 376
+ + + M G+ +G L +EGW
Sbjct: 406 KTRCTITWTTMISGFAYNGQFREALLVYNDMCREGVTLDDTVFVAALGACAHGGLLQEGW 465
Query: 377 VLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+F+ + ++ I PR +HY +VDLL RA S + I+ M E S + L+S
Sbjct: 466 SIFNQMVEYCRIVPRMEHYGCIVDLLGRAELSEYVSTKIVEM--EPFNSSYQVLVSNCSA 523
Query: 436 PMQQWENMLQTIRGIDEGEKTDKRPG 461
+W++++ R + + +K PG
Sbjct: 524 LEGRWDSVMDARRTMRDC-GVEKTPG 548
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 151/353 (42%), Gaps = 90/353 (25%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF----- 226
+++ + T L++MYA CG + A F+R ++ V+ ++MI GY +
Sbjct: 112 SDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKM 171
Query: 227 --DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-- 279
DG S +E T + +L+ L G +H + ++ +++ + L L+++ A C
Sbjct: 172 EEDGF-SPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGD 230
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+V W+A+I GY KN + EA++LF
Sbjct: 231 LKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS 290
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+W+ YI +++ ++V +N LIDM++KCG +D A FD KD++
Sbjct: 291 ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS 350
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------------------- 389
++M G LHGLG E FH ++ ++P
Sbjct: 351 WNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIE 410
Query: 390 -------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +HY +VDLL RAG A +FI MP++ ++ ++L A ++
Sbjct: 411 ALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV 463
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 29/213 (13%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSR 66
+P+ T ++ AC L L +G ++H I + +C + +++Y
Sbjct: 177 SPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGS------ALVNMYAKCGD 230
Query: 67 TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLISLT 125
+ +A FD L D + ++ G+ +K E+ L +
Sbjct: 231 LK-TARQVFDQL---------------SDKDVYAWSALIFGY-VKNNRSTEALQLFREVA 273
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
+PN A+IS A+ G E +W+ YI +++ ++V +N LIDM++
Sbjct: 274 GGSNMRPNEVTILAVISACAQLGDLETG-----RWVHDYITRTQKGHSVSLNNSLIDMFS 328
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
KCG +D A FD KD++ ++M+ G LH
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGLALH 361
>gi|297740478|emb|CBI30660.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/428 (23%), Positives = 183/428 (42%), Gaps = 108/428 (25%)
Query: 97 EFLEQGKIVHGFMIKLGLELESD-----LLISLTAVC-RY---------QPNVTLRNAMI 141
+F G+ +H ++K+G E ++ L++ L + C RY QP ++ N MI
Sbjct: 56 DFPSHGQKIHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQLFDEMHQPTLSAYNYMI 115
Query: 142 SGYAKNGYAEEAVKLFPKW----------------------------MDYYIGKSEY--- 170
SGY K+G EE + L + + Y +GK +
Sbjct: 116 SGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIFPLTYSLGKVVHAQI 175
Query: 171 -RNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
R+NV ++ T L+D Y K G V A FD LDK+V+ ++MI GY
Sbjct: 176 LRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCSTSMISGY---------M 226
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLISLTAVCRYQPN 284
G + + E+ + ++ + + ++ G+ + S ++ I + + ++P
Sbjct: 227 SQGSVEDAEDIFKRTVE----KDVVVFNAMIEGYSKSVETARRSLEVYIDMQRL-NFRPT 281
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
++ + ++I + E + + + K + N++ + + LIDMY+KCG ++ A
Sbjct: 282 MSTFASVIGACSVLTVFE-----IGQQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDA 336
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEE------------------------------ 374
FD +K+V ++M GYG +G E
Sbjct: 337 RRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVTFLSALSACGH 396
Query: 375 ------GWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
GW + + R + ++PR +HYA +VDLL RAG A++F+M MP + V
Sbjct: 397 AGLVAKGWTILESMERDYLLKPRMEHYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVWA 456
Query: 428 ALLSAWKI 435
ALLS+ ++
Sbjct: 457 ALLSSCQL 464
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 192/493 (38%), Gaps = 140/493 (28%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISL--------TAV 127
+S E T L+ LE G VHG++IKLG + ++ L+ + A+
Sbjct: 184 ISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAI 243
Query: 128 CRY----QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------- 170
+ +P++ NA+I+G + + A+KL K Y + S +
Sbjct: 244 AVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIG 303
Query: 171 -----------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+ V LIDMY+KCG + A M FD KDV++ +++I
Sbjct: 304 LVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIIS 363
Query: 214 GYG-----LHEWSAFGSF--DGLLSNEENEYGTALDCSCDLE---FLEQGKIVHGFMIKL 263
GY + S F + +GL N+ T L + + F EQ VH IK
Sbjct: 364 GYSNCGYDIEAMSLFTNMYKEGLEFNQTT-LSTILKSTAGSQANGFCEQ---VHTISIKS 419
Query: 264 GLE----LESDLLISLTAVCRYQ-----------PNVTLWNAMISGYAKNGYAEEAVKLF 308
G + + + LL S C + ++ + +MI+ Y++ G EEA+K++
Sbjct: 420 GYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMY 479
Query: 309 PKWMD----------------------YYIGKSEY--------RNNVIVNTVLIDMYAKC 338
+ D Y GK + ++V L++MYAKC
Sbjct: 480 LRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKC 539
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------- 391
GS+D A F+ + +V SAM G HG G + LF+ + K+GI P H
Sbjct: 540 GSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVL 599
Query: 392 -----------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
+HYA +VD+L R G + A + MP +
Sbjct: 600 SACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQAS 659
Query: 423 LSVRRALLSAWKI 435
+V ALL A +I
Sbjct: 660 AAVWGALLGAARI 672
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 72/304 (23%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+P++ +A+ISGY +NG EEA L + Y +G N ++VL C
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEA--LLTYYEMYLLGAKG--NEFTFSSVL----KGCS-- 159
Query: 191 DLAPMFFDRTLD-KDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
R L+ + R A++ E + G +S E T L+ LE
Sbjct: 160 ------LTRNLELGKQIHRVALVT-----EMISTG-----ISPNEFSLSTVLNACAGLED 203
Query: 250 LEQGKIVHGFMIKLGLE---LESDLLISL--------TAVCRY----QPNVTLWNAMISG 294
G VHG++IKLG + ++ L+ + A+ + +P++ WNA+I+G
Sbjct: 204 ENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAG 263
Query: 295 YAKNGYAEEAVKLFPKWMDYYIGKSEY------------------------------RNN 324
+ + A+KL K Y + S + +
Sbjct: 264 CVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPD 323
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
V LIDMY+KCG + A M FD KDV++ +++ GY G E LF ++ K
Sbjct: 324 SFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYK 383
Query: 385 HGIE 388
G+E
Sbjct: 384 EGLE 387
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 176/394 (44%), Gaps = 74/394 (18%)
Query: 98 FLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY-------------QPNVTLRNAMI 141
LE+GK +H IK + + + L+ + A C+ + N L AM+
Sbjct: 153 LLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMV 212
Query: 142 SGYAKNGYAEEAVKLF---------------PKWMDYY---------------IGKSEYR 171
+GY++NG +A++ F P + I +S +
Sbjct: 213 TGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFG 272
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YGLHEWSAFGSFDG 228
NV V + L+DMY+KCG + A + D V ++MIVG GL E A F
Sbjct: 273 ANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGE-EALSLFRI 331
Query: 229 L----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
+ + +E Y + ++ + + ++G + F D+ +T +
Sbjct: 332 MHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAF----------DVFEKMT-----DKD 376
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV---LIDMYAKCGSV 341
V W ++++G NG EEA++LF + I + +++ + L+ MYAKCG +
Sbjct: 377 VISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCGCI 436
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
+ A FD +DV+ +A+ VGY +G G + + + +GI+P +HYA ++DLL
Sbjct: 437 EDANKVFDSMEIQDVITWTALIVGYAQNGRGRDYFQSMEEV--YGIKPGPEHYACMIDLL 494
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R+G A + + M ++ +V +ALL+A ++
Sbjct: 495 GRSGKLMEAKELLNQMAVQPDATVWKALLAACRV 528
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 139/345 (40%), Gaps = 64/345 (18%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------- 166
+++ISGY + G EA++LF W Y G
Sbjct: 107 SSLISGYCRYGCDVEALELF--WEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164
Query: 167 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGY-----GLHE 219
K+++ +N V T L+DMYAKC + A F+ DK + V+ +AM+ GY G
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224
Query: 220 WSAFGSFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISL 275
F G + + + + L + G VHG +++ G L+ +
Sbjct: 225 IECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDM 284
Query: 276 TAVCRYQPNV------------TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323
+ C N WN+MI G + G EEA+ LF ++ E+
Sbjct: 285 YSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTY 344
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+VN L+DMYAK G D A F++ DKDV+ +++ G +G EE LF +R
Sbjct: 345 PSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMR 404
Query: 384 KHGIEPRHQHYARV--------VDLLARAGYSNHAFKFIMNMPIE 420
GI P A V V + A+ G A K +M I+
Sbjct: 405 IMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQ 449
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 131/331 (39%), Gaps = 93/331 (28%)
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHE------------- 219
N VL ++ +KCG VD A FD D+D + MI Y L+E
Sbjct: 45 NWVLSNL-SKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103
Query: 220 --WSAFGS-------------------FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 258
WS+ S ++G N+ +G+ L LE+GK +H
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFT-WGSVLRVCSMYVLLEKGKQIHA 162
Query: 259 FMIKLGLELESDL---LISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAE 302
IK + + + L+ + A C+ + N LW AM++GY++NG
Sbjct: 163 HAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGH 222
Query: 303 EAVKL---------------FPKWMDY---------------YIGKSEYRNNVIVNTVLI 332
+A++ FP + I +S + NV V + L+
Sbjct: 223 KAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALV 282
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH--HIRKHGIE-- 388
DMY+KCG + A + D V ++M VG GLGEE LF H+R I+
Sbjct: 283 DMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEF 342
Query: 389 --PRHQHYARVVDLLARAGYSNHAFKFIMNM 417
P + A +VD+ A+ GY ++AF M
Sbjct: 343 TYPSLVNNA-LVDMYAKRGYFDYAFDVFEKM 372
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV---LIDMYAKCGSVDLAP 194
++++G NG EEA++LF + I + +++ + L+ MYAKCG ++ A
Sbjct: 381 TSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDAN 440
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK 254
FD +DV+ +A+IVGY + G + E YG ++ G
Sbjct: 441 KVFDSMEIQDVITWTALIVGYAQN-----GRGRDYFQSMEEVYG-----------IKPGP 484
Query: 255 IVHGFMIKL----GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
+ MI L G +E+ L++ AV QP+ T+W A+++ +G E
Sbjct: 485 EHYACMIDLLGRSGKLMEAKELLNQMAV---QPDATVWKALLAACRVHGNVE 533
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 110/438 (25%), Positives = 174/438 (39%), Gaps = 111/438 (25%)
Query: 96 LEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAM 140
L + G+ V+GF++K G + + ++ L CR + ++ N M
Sbjct: 114 LTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMM 173
Query: 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
ISGY N + A K F + + NV+ T +I Y K G + A + FD
Sbjct: 174 ISGYGNNDRVDIARKFFDRMPE---------RNVVSWTSMICGYVKAGDMAEAQVLFDSM 224
Query: 201 LDKDVVMRSAMIVGY-----GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK- 254
KD+ + M+ GY ++ FG + ++ + + C LE K
Sbjct: 225 PVKDLASWNVMVSGYMDIGDCVNARIIFGK---MPIHDTGSWNIMISGFCKAGELESAKD 281
Query: 255 ----IVHGFMIKLGLELESDLLISLT--AVCRYQ----PNVTLWNAMISGYAKNGYAEEA 304
+ + +I G+ L+ + T A C + N+ W+ MI GYA+NG +A
Sbjct: 282 FFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKA 341
Query: 305 VKLFPKWMDY-------------------------------YIGKSEYRNNVIVNTVLID 333
++LF ++ + Y+G S +++ V T LID
Sbjct: 342 LELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPS-LLSDLRVFTSLID 400
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--------- 384
MYAKCGS++ A F+ KD++ S M HGLG + LF +++
Sbjct: 401 MYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVT 460
Query: 385 ---------------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
GI+P +HYA VVDLL R G A+ I NM
Sbjct: 461 FLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNM 520
Query: 418 PIELRLSVRRALLSAWKI 435
PI V ALL+A ++
Sbjct: 521 PIAPHSVVWGALLAACRV 538
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 30/208 (14%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL----LSNE 233
L+ +Y++ G+ D A FD + + +++I GY + AF F + +S
Sbjct: 41 LLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVL 100
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY--------- 281
+ L L + G+ V+GF++K G + + ++ L CR
Sbjct: 101 NFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFD 160
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 338
+ ++ WN MISGY N + A K F + + NV+ T +I Y K
Sbjct: 161 EMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPE---------RNVVSWTSMICGYVKA 211
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
G + A + FD KD+ + M GY
Sbjct: 212 GDMAEAQVLFDSMPVKDLASWNVMVSGY 239
>gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial [Vitis vinifera]
Length = 533
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/438 (23%), Positives = 188/438 (42%), Gaps = 112/438 (25%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESD-----LLISLTAVC-RY---------QPN 133
AL + +F G+ +H ++K+G E ++ L++ L + C RY QP
Sbjct: 48 ALQHYINSDFPSHGQKIHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQLFDEMHQPT 107
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKW----------------------------MDYYI 165
++ N MISGY K+G EE + L + + Y +
Sbjct: 108 LSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIFPLTYSL 167
Query: 166 GKSEY----RNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
GK + R+NV ++ T L+D Y K G V A FD LDK+V+ ++MI GY
Sbjct: 168 GKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCSTSMISGY-- 225
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLISLT 276
G + + E+ + ++ + + ++ G+ + S ++ I +
Sbjct: 226 -------MSQGSVEDAEDIFKRTVE----KDVVVFNAMIEGYSKSVETARRSLEVYIDMQ 274
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--KWMDYYIGKSEYRNNVIVNTVLIDM 334
+ ++P ++ + ++I A + +F + + + K + N++ + + LIDM
Sbjct: 275 RL-NFRPTMSTFASVIG-------ACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALIDM 326
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE-------------------- 374
Y+KCG ++ A FD +K+V ++M GYG +G E
Sbjct: 327 YSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVT 386
Query: 375 ----------------GWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
GW + + R + ++PR +HYA +VDLL RAG A++F+M M
Sbjct: 387 FLSALSACGHAGLVAKGWTILESMERDYLLKPRMEHYACMVDLLGRAGSLQQAWEFVMRM 446
Query: 418 PIELRLSVRRALLSAWKI 435
P + V ALLS+ ++
Sbjct: 447 PEKPGSDVWAALLSSCQL 464
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 111/430 (25%), Positives = 170/430 (39%), Gaps = 122/430 (28%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
+G+ +HG ++KLG +L+ + + ++IS Y +NG E+A K+F
Sbjct: 104 FREGQQIHGHVLKLGYDLD----------------LYVHTSLISMYVQNGRLEDARKVFD 147
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL- 217
+ S +R+ V+ T LI YA G ++ A FD KDVV +AMI GY
Sbjct: 148 Q--------SSHRD-VVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 198
Query: 218 -HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVH------GFMIKLGLE 266
+ A F ++ +E+ T + +E G+ VH GF L +
Sbjct: 199 GNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKI- 257
Query: 267 LESDLLISLTAVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP---- 309
+ LI L + C Y+ +V WN +I GY +EA+ LF
Sbjct: 258 --VNALIDLYSKCGEVETACGLFEGLSYK-DVISWNTLIGGYTHMNLYKEALLLFQEMLR 314
Query: 310 --------------------------KWMDYYIGK--SEYRNNVIVNTVLIDMYAKCGSV 341
+W+ YI K N + T LIDMYAKCG +
Sbjct: 315 SGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDI 374
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------ 389
+ A FD L + + +AM G+ +HG + LF +RK+GI+P
Sbjct: 375 EAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSAC 434
Query: 390 ---------RH---------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
RH +HY ++DLL G A + I MP+E +
Sbjct: 435 SHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVI 494
Query: 426 RRALLSAWKI 435
+LL A K+
Sbjct: 495 WCSLLKACKM 504
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 31/224 (13%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V P+ T V+ AC S+ +G +VH I G F +DLY
Sbjct: 216 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG------FGSNLKIVNALIDLYSKCG 269
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
E +A G F+GL + + T + + ++ ++ M++ G ++S+
Sbjct: 270 EVE-TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSIL 328
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK--SEYRNNVIVNTVLIDM 183
C + + + +W+ YI K N + T LIDM
Sbjct: 329 PACAHLGAIDI---------------------GRWIHVYINKRLKGVTNASSLLTSLIDM 367
Query: 184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
YAKCG ++ A FD L + + +AMI G+ +H A +FD
Sbjct: 368 YAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMH-GKANAAFD 410
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 121/294 (41%), Gaps = 86/294 (29%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237
T +I YAK G +D A + FD ++D + + MI GY H
Sbjct: 10 TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQH------------------- 50
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297
GL E LL + +PN A++S +
Sbjct: 51 --------------------------GLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQ 84
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
G E +W+ YI + NV V T LIDMY+KCGS++ A + F+R +KDVV
Sbjct: 85 TGALETG-----RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVV 139
Query: 358 MRSAMTVGYGLHGLGE-----------------------------------EGWVLFHHI 382
++M VGY +HG + EGW F+ +
Sbjct: 140 AWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSM 199
Query: 383 R-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ ++GIEP+ +HY +V+LL RAGY A++ + NM I+ + LL A ++
Sbjct: 200 KDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRL 253
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 113 GLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 172
GL E LL + +PN A++S + G E +W+ YI +
Sbjct: 51 GLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALETG-----RWVHSYIENNGIGI 105
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
NV V T LIDMY+KCGS++ A + F+R +KDVV ++M+VGY +H +S
Sbjct: 106 NVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFS 154
>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
Length = 653
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 147/356 (41%), Gaps = 98/356 (27%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
NV+ N++ IDMY+KCG ++ A F+ ++++ +AMI GY + + F +L
Sbjct: 108 NVVGNSI-IDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTV---AGFCEKALVLFQ 163
Query: 233 EENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGL-----ELESDLLISLTA 277
+ E G LD CS DL +++G +H F+I G + LI L
Sbjct: 164 KMQEVGGFLDEFTFTSTLKACS-DLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYV 222
Query: 278 VCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
C + +V W A+I GYA+ G E+++LF
Sbjct: 223 KCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSS 282
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K M + K ++ V ++DMY KCG ++ A F ++
Sbjct: 283 MMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARN 342
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------------------- 383
V+ + M GYG HGLG+E LF ++
Sbjct: 343 VISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFS 402
Query: 384 ----KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HGI+ R +HYA +VDLL RAG A + +MP+E + + + LLSA ++
Sbjct: 403 RLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRV 458
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 139/321 (43%), Gaps = 64/321 (19%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHEWSAFG 224
+++++ LI MY KCG + +A FDR L ++VV +A++ G+ L +S G
Sbjct: 6 DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-------- 276
G+ N+ + T L L L+ G+ +H +K G ++ + + S+
Sbjct: 66 -LSGVKPNDFT-FSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGR 123
Query: 277 ---AVCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFPK------WMDYYIGKSE--- 320
A C ++ N+ WNAMI+GY G+ E+A+ LF K ++D + S
Sbjct: 124 INEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKA 183
Query: 321 -----------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
Y N V LID+Y KCG + +A F +K V+
Sbjct: 184 CSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVI 243
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFK 412
+A+ +GY G E LF +R+ I+ + ++ + A + G HAF
Sbjct: 244 SWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFA 303
Query: 413 FIMNMPIELRLSVRRALLSAW 433
+ +P + +SV ++L +
Sbjct: 304 --IKVPSGVDISVCNSILDMY 322
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 105/294 (35%), Gaps = 77/294 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGL 50
M ++ V PN T LKAC L L +G ++H GF + Y G
Sbjct: 64 MGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGR 123
Query: 51 FDRTIVFLDLYHLWSRTEWSA---------FGSFDGLLSNEENEYGTALD---------- 91
+ ++ + + W+A F +L + E G LD
Sbjct: 124 INEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKA 183
Query: 92 CSCDLEFLEQGKIVHGFMIKLGL-----ELESDLLISLTAVCRY------------QPNV 134
CS DL +++G +H F+I G + LI L C + +V
Sbjct: 184 CS-DLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHV 242
Query: 135 TLRNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 164
A+I GYA+ G E+++LF K M +
Sbjct: 243 ISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAF 302
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K ++ V ++DMY KCG ++ A F ++V+ + MI GYG H
Sbjct: 303 AIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKH 356
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/427 (25%), Positives = 172/427 (40%), Gaps = 121/427 (28%)
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
E+ +++ + K GL++++ L+ + C +P V L I G
Sbjct: 61 EEAILIYNHVRKKGLKVDTYTLVFVIKACGLRP-VILEGEQIHGQ--------------- 104
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYA----KCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
I K + VI+ T L+ MY CG FD +D+VM +A+I Y
Sbjct: 105 -----IFKLGFEFEVIIQTALLSMYGLFDEDCG----LQQIFDEMPQRDLVMWNALIAAY 155
Query: 216 GLHEWSAFG----SFDGLLSNEENEYGTALD----CSCDLEFLEQGKIVHGFMIKLGLEL 267
H + S+D + SN + TA+ CS L L +GK VHG++ K +E
Sbjct: 156 A-HGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCS-SLRALREGKAVHGYVTKNLIEX 213
Query: 268 E---SDLLISLTAVC----------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPK-- 310
+ + LI + + C + P NV W ++I+GY+ N EA+ F +
Sbjct: 214 DVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQME 273
Query: 311 ----------------------------WMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSV 341
W+ Y+ K+ + + + VL+DM+AKCG++
Sbjct: 274 AENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNI 333
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG----------------------------- 372
A FD +K +V + M G ++G G
Sbjct: 334 KRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSAC 393
Query: 373 ------EEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
+EGW F + + I P +HY +VD+L RAG + AFKF+ NMPI+ + V
Sbjct: 394 SHAGLVDEGWRCFSSMEADYHIXPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIV 453
Query: 426 RRALLSA 432
R LL A
Sbjct: 454 WRTLLGA 460
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 117/289 (40%), Gaps = 78/289 (26%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFD-------GLFDRTIVFLDLYHLWSRT 67
V+KAC P +L G ++HGQIF LGF + GLFD ++ +
Sbjct: 84 FVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIFDEMPQR 143
Query: 68 E---WSAF---------------GSFDGLLSNEENEYGTALD----CSCDLEFLEQGKIV 105
+ W+A S+D + SN + TA+ CS L L +GK V
Sbjct: 144 DLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCS-SLRALREGKAV 202
Query: 106 HGFMIKLGLELE---SDLLISLTAVC----------RYQP--NVTLRNAMISGYAKNGYA 150
HG++ K +E + + LI + + C + P NV ++I+GY+ N
Sbjct: 203 HGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCP 262
Query: 151 EEAVKLFPK------------------------------WMDYYIGKSE-YRNNVIVNTV 179
EA+ F + W+ Y+ K+ + + + V
Sbjct: 263 NEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANV 322
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSF 226
L+DM+AKCG++ A FD +K +V + MI G + H SA F
Sbjct: 323 LMDMHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRF 371
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 154/353 (43%), Gaps = 90/353 (25%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF----- 226
+++ + T L++MYA CG + A F+R ++ V+ ++MI GY +
Sbjct: 112 SDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKM 171
Query: 227 --DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-- 279
DG S +E T + +L+ L G +H + ++ +++ + L L+++ A C
Sbjct: 172 EEDGF-SPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGD 230
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+V W+A+I GY KN + EA++LF
Sbjct: 231 LKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS 290
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+W+ YI +++ ++V +N LIDM++KCG +D A FD KD++
Sbjct: 291 ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS 350
Query: 359 RSAMTVGYGLHGLG-----------------------------------EEGWVLFHHIR 383
++M G+ LHGLG +EG LF+ I
Sbjct: 351 WNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIE 410
Query: 384 K-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+G+ + +HY +VDLL RAG A +FI MP++ ++ ++L A ++
Sbjct: 411 ALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV 463
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 29/213 (13%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSR 66
+P+ T ++ AC L L +G ++H I + +C + +++Y
Sbjct: 177 SPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGS------ALVNMYAKCGD 230
Query: 67 TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLISLT 125
+ +A FD L D + ++ G+ +K E+ L +
Sbjct: 231 LK-TARQVFDKL---------------SDKDVYAWSALIFGY-VKNNRSTEALQLFREVA 273
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
+PN A+IS A+ G E +W+ YI +++ ++V +N LIDM++
Sbjct: 274 GGSNMRPNEVTILAVISACAQLGDLETG-----RWVHDYITRTQKGHSVSLNNSLIDMFS 328
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
KCG +D A FD KD++ ++M+ G+ LH
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGFALH 361
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/477 (22%), Positives = 182/477 (38%), Gaps = 142/477 (29%)
Query: 95 DLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRYQPNVTLRN------------- 138
+L L +G+ +HG ++K G+ ++ L+S+ + C P R+
Sbjct: 579 NLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCG-NPEEAHRSFCEVLNKDIISWT 637
Query: 139 AMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKS 168
+MIS Y++ G+A E + +F K I +
Sbjct: 638 SMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRR 697
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----------L 217
Y + +V L+ MY K G + LA FF R +++ + M+ GYG
Sbjct: 698 HYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLF 757
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----------- 266
E G + ++ N + + L + +H +MIK ++
Sbjct: 758 REMQCLG-----IESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDENVSVNNSLID 812
Query: 267 ---LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM----------- 312
+L I+ CR ++ WN +IS YA G+ EA+ L+ K +
Sbjct: 813 MYGKSGNLTIARRIFCRIPRDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATL 872
Query: 313 -------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
YI ++ N+ + T LIDMYAKCG ++ + F+ +
Sbjct: 873 VXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHE 932
Query: 354 KDVVMRSAMTVGYGLHG-----------------------------------LGEEGWVL 378
+DV+ + M GYG+HG L +EG L
Sbjct: 933 RDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYL 992
Query: 379 FHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
F ++ + + P +HYA +VDLL R+G A +++MPI V ALLS+ KI
Sbjct: 993 FGKMQDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKI 1049
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 120/475 (25%), Positives = 196/475 (41%), Gaps = 123/475 (25%)
Query: 71 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 126
+ GSF G+L++ + N + + L L L G+ +HG++I++GL+ DL
Sbjct: 90 SLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDF--DLYTG--- 144
Query: 127 VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
NA+++ Y+K + EE+ + + + +E +V +VL
Sbjct: 145 -----------NALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL------ 187
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS-----AFGSFDGLLSNEENEYG 238
S D F+ +KD+V + +I G GL+E + G + L +
Sbjct: 188 --SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN--LKPDSFTLS 243
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPN----VTL---- 287
+ L + + +GK +HG I+ GL+ + + LI + A C + TL
Sbjct: 244 SVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER 303
Query: 288 ----WNAMISGYAKNGYAEEAVKLF---------PKWMDY-------------------- 314
WN++I+G +NG +E ++ F PK +
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363
Query: 315 -YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH---- 369
YI ++ + N+ + + L+DMYAKCG++ A FDR +D+V +AM +G LH
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423
Query: 370 ------------------------GLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARA 404
GL +E W F+ + R GI P +HYA V DLL RA
Sbjct: 424 DAIELFEQMETEGIKAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRA 483
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDKR 459
G A+ FI M I S+ LLSA ++ + ID EK R
Sbjct: 484 GRLEEAYDFICGMHIGPTGSIWATLLSACRVH-----------KNIDMAEKVANR 527
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 166/423 (39%), Gaps = 114/423 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRN 138
LEFL++G +HGF+ K G+ SDL + + Y Q + N
Sbjct: 114 LEFLKEGMQIHGFLRKTGIW--SDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYN 171
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
+MI GY K G + A KLF + E +N + N+++ ++ A F
Sbjct: 172 SMIDGYVKCGLMKSAHKLFD------LMPREIKNLISWNSMISGYAQTADGLNTASKLFS 225
Query: 199 RTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
+KD++ ++MI G H A G FD + + + T +D L F+ K +
Sbjct: 226 EMPEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSL 285
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW----- 311
M +Q +V N+M++GY +N Y EA+++F
Sbjct: 286 FDQM--------------------HQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSH 325
Query: 312 --------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
M YI + + + LIDM++KCGS+ A
Sbjct: 326 LSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAI 385
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGE-------------------------------- 373
F+ +K + +AM G +HGLGE
Sbjct: 386 SVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSG 445
Query: 374 ---EGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
EG + F + RKH IEPR QHY +VD+L+R+G A I +MP+E + R+
Sbjct: 446 LVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSF 505
Query: 430 LSA 432
LSA
Sbjct: 506 LSA 508
>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 679
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 133/602 (22%), Positives = 216/602 (35%), Gaps = 185/602 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFDGLFDRTI 55
M ++ V+P+ P+VLKA L L +G ++H + G+ + + +
Sbjct: 68 MILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANSLVNFYGKCS 127
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSN--EENEYGTALD---------------------- 91
D+Y ++ R S++ L+S E+ AL+
Sbjct: 128 ELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPSSFTLVSPVI 187
Query: 92 -CSC--DLEFLEQGKIVHGFMIK------------------LGLELESDLLISL------ 124
CS E L GK +HG+ + LG ++ L L
Sbjct: 188 ACSNLRKHEGLRLGKQIHGYCFRNGHWSTFTNNALMTMYANLGRLDDAKFLFKLFEDRNL 247
Query: 125 ----TAVCRYQPN-------VTLRNAMISGYAKNGYAEEAVKLFPKWMD----------Y 163
T + + N ++LR ++ G +G +V +++ Y
Sbjct: 248 ISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLEMLGTGKEIHAY 307
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWS 221
+ + N V + L+DMY CG V FD L++ + +AMI GY H+
Sbjct: 308 ALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNAMIAGYAQNEHDEK 367
Query: 222 AFGSF------DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLL 272
A F GL N + + S E + +HG++IK LE + + L
Sbjct: 368 ALMLFIEMVAVAGLCPNTTT-MASIVPASARCESFFSKESIHGYVIKRDLERDRYVQNAL 426
Query: 273 ISLTAVCRYQP------------NVTLWNAMISGYAKNG-------------YAEEAVK- 306
+ + + R ++ WN MI+GY +G +A E +
Sbjct: 427 MDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYNDALLMLHEMQHANEGINK 486
Query: 307 ------------------LFP-----------KWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+ P K + Y ++ + V V + L+DMYAK
Sbjct: 487 HDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAVRNALASEVTVGSALVDMYAK 546
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE----------------------- 374
CG ++L+ FD+ K+V+ + + + YG+HG GEE
Sbjct: 547 CGCLNLSRRVFDQMPIKNVITWNVIVMAYGMHGNGEEALELFKDMVAKGDNVGEVKPTEV 606
Query: 375 -----------------GWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
G LFH ++ HGIEP HYA V DLL RAG A+ FI
Sbjct: 607 TMIAILAACSHSGMVDEGLKLFHRMKDDHGIEPGPDHYACVADLLGRAGKVEQAYDFINT 666
Query: 417 MP 418
MP
Sbjct: 667 MP 668
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 165/403 (40%), Gaps = 105/403 (26%)
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYA 145
QG+ VH IK G +++ ++ ++ L C+ Q + NA+I+
Sbjct: 411 QGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALE 470
Query: 146 KNGYAEEAVKLFPKWM-------DYYIG-----------------------KSEYRNNVI 175
+NG+ ++ + F + + D+ G KS ++
Sbjct: 471 QNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF 530
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS------FDGL 229
V + ++DMY KCG +D A DR + VV +A++ G+ L++ S D
Sbjct: 531 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG 590
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVCRYQPNVT 286
L + + T LD +L +E GK +HG +IK L E S L+ + A C P+
Sbjct: 591 LKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSL 650
Query: 287 L------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLID 333
L WNAMI GYA +G EA+++F + + NV+ N +
Sbjct: 651 LVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQ---------KENVVPNHATFVA 701
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQ 392
+ C V GL ++G FH + H +EP+ +
Sbjct: 702 VLRACSHV----------------------------GLFDDGCRYFHLMTTHYKLEPQLE 733
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H+A +VD+L R+ A KFI +MP + + + LLS KI
Sbjct: 734 HFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKI 776
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 49/180 (27%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
YG+ L L LE G +VH +IK GL SD ++ T V Y
Sbjct: 497 YGSVLKACAALRSLEYGLMVHDKVIKSGLG--SDAFVASTVVDMYCKCGIIDEAQKLHDR 554
Query: 131 --QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY------------------------- 163
V NA++SG++ N +EEA K F + +D
Sbjct: 555 IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 614
Query: 164 -----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
I K E ++ +++ L+DMYAKCG + + + F++ +D V +AMI GY LH
Sbjct: 615 KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALH 674
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 132/354 (37%), Gaps = 85/354 (24%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYYI----------------- 165
P+V NA++SGY + G +E+V LF P + +
Sbjct: 154 PDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV 213
Query: 166 ----GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
K+ +V + L+DMY KC S+D A FF +++ V A I G +E
Sbjct: 214 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQY 273
Query: 222 AFG-----SFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
G L L + Y +A + L G+ +H IK + SD ++
Sbjct: 274 VRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIK--NKFSSDRVVGT 331
Query: 276 TAVCRYQ---------------PNVTL--WNAMISGYAKNGYAEEAVKLF---------- 308
V Y PN T+ NAM+ G + G EA+ LF
Sbjct: 332 AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRF 391
Query: 309 ------------PKWMDYYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+ Y+ G KS + ++ VN ++D+Y KC ++ A + F
Sbjct: 392 DVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF 451
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
KD V +A+ +G ++ + F+ + + G++P Y V+ A
Sbjct: 452 QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACA 505
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 104/268 (38%), Gaps = 52/268 (19%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
R+ V NT+L Y+ G + A FD D DVV +A++ GY G+ + S +
Sbjct: 123 RDTVSWNTMLT-AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 181
Query: 228 GL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY 281
+S + + L LE L G VH +K GLE++ L+ + CR
Sbjct: 182 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 241
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------ 317
+ N W A I+G +N ++LF + +G
Sbjct: 242 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 301
Query: 318 ------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K+++ ++ +V T ++D+YAK S+ A F + V
Sbjct: 302 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 361
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+AM VG GLG E LF + + I
Sbjct: 362 NAMMVGLVRAGLGIEAMGLFQFMIRSSI 389
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 78/197 (39%), Gaps = 47/197 (23%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTIVF 57
P+ T VLKAC AL SL G VH ++ G F+ + D G+ D
Sbjct: 492 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 551
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENE--------------------YGTALDCSCDLE 97
D W+A G N+E+E + T LD +L
Sbjct: 552 HDRIGGQQVVSWNAI--LSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 609
Query: 98 FLEQGKIVHGFMIK---LGLELESDLLISLTAVCRYQPNVTLR------------NAMIS 142
+E GK +HG +IK L E S L+ + A C P+ L NAMI
Sbjct: 610 TIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMIC 669
Query: 143 GYAKNGYAEEAVKLFPK 159
GYA +G EA+++F +
Sbjct: 670 GYALHGLGVEALRMFER 686
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
R+ V NT+L Y+ G + A FD D DVV +A+ GY G+ +E LF
Sbjct: 123 RDTVSWNTMLT-AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 181
Query: 382 IRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRL------------S 424
+ + G+ P +A ++ + G HA + I++R S
Sbjct: 182 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 241
Query: 425 VRRALLSAWKIPMQQWENMLQTIRGIDEGEK 455
+ AL + +P + W + I G + E+
Sbjct: 242 LDDALCFFYGMPERNWVSWGAAIAGCVQNEQ 272
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 133/316 (42%), Gaps = 67/316 (21%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS- 231
++ V L+DMYAKCG VD A FDR +KDVV +AM+ GY S G F+ L
Sbjct: 47 DLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGY-----SQIGRFEDALGL 101
Query: 232 ----NEENEYGTALDCSCDLEFLEQGKIVHGFMIK-LGLEL----------ESDLLISLT 276
EEN +L + ++ F + LG E E++ + L
Sbjct: 102 FEKMREEN---------IELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELF 152
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI-VNTVLIDMY 335
+ Q + N A A A + + YI ++ + + + V LIDMY
Sbjct: 153 SWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMY 212
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----- 390
AK G +D+A FD K+ V +++ GYG+HG G+E +F +R+ G++P
Sbjct: 213 AKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLL 272
Query: 391 -------------------------------HQHYARVVDLLARAGYSNHAFKFIMNMPI 419
+HYA +VDLL RAG N A + I M +
Sbjct: 273 VVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQM 332
Query: 420 ELRLSVRRALLSAWKI 435
E V ALLS +I
Sbjct: 333 EPSSIVWVALLSGCRI 348
>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 129/543 (23%), Positives = 219/543 (40%), Gaps = 166/543 (30%)
Query: 46 LFDGLFDRTIV---FLDLYHLWSRTEWSAFGSFDGLLSN----EENEYGTALDCSC-DLE 97
+FDG+ DR V + H + A G F +L + ++ G+A+ C+C +L
Sbjct: 104 VFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAI-CACSELG 162
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN-----------------AM 140
L G+ VH IK E SDL++ V Y + ++ + ++
Sbjct: 163 DLGLGRQVHAQAIKW--ESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSI 220
Query: 141 ISGYAKNGYAEEAVKLFPKWM--------DYYIGKSEYRNNVIVNTV------------- 179
I+G A+ G +A+++F + + +++ G +V+VN++
Sbjct: 221 IAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKY 280
Query: 180 -----------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
L DMYA+C +D A F R D+V +++I + S G
Sbjct: 281 QLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAF---------SAKG 331
Query: 229 LLS------NEENEYG--------TALDCSC-DLEFLEQGKIVHGFMIKLGLE---LESD 270
LLS +E + G AL C+C + L QG+ +H +++KLGL + S+
Sbjct: 332 LLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSN 391
Query: 271 LLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------- 309
L+S+ A C + +V WN++++ ++ + E+ KLF
Sbjct: 392 SLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSL 451
Query: 310 ---------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
K + Y K + +++ LID YAKCGS+D A F
Sbjct: 452 DRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLF 511
Query: 349 D-RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------- 391
+ +DV S++ VGY G +E LF +R G++P H
Sbjct: 512 EIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLV 571
Query: 392 --------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+H + V+DLLARAG + A KF+ MP E + + + LL+
Sbjct: 572 DEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLA 631
Query: 432 AWK 434
A +
Sbjct: 632 ASR 634
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 122/274 (44%), Gaps = 59/274 (21%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL 229
+N I++ LI MY +CG+ D A + FD LD++ V +A+I + + A G F +
Sbjct: 80 HNTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSM 139
Query: 230 LSN----EENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
L + ++ G+A+ C+C +L L G+ VH IK E SDL++ V Y +
Sbjct: 140 LRSGTMPDQFALGSAI-CACSELGDLGLGRQVHAQAIKW--ESGSDLIVQNALVTMYSKS 196
Query: 285 VTL-----------------WNAMISGYAKNGYAEEAVKLFPKWM--------DYYIGKS 319
++ W ++I+G A+ G +A+++F + + +++ G
Sbjct: 197 GSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSV 256
Query: 320 EYRNNVIVNTV------------------------LIDMYAKCGSVDLAPMFFDRTLDKD 355
+V+VN++ L DMYA+C +D A F R D
Sbjct: 257 FRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPD 316
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+V +++ + GL E VLF +R G+ P
Sbjct: 317 LVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRP 350
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 156/400 (39%), Gaps = 109/400 (27%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G +VH ++K G E +S ++ N++I YA A +LF
Sbjct: 19 GLLVHTHVVKSGFECDSYIV----------------NSLIHLYANGKDLGAAKQLFSLCS 62
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
D +V+ +ID Y K G + M FDR + +DV+ + +I GY +
Sbjct: 63 D---------RDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAI---- 109
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G D E D + + ++ GF +K G E+ L S CR
Sbjct: 110 -VGKID--------EAKRLFDEMPERNLVSWNSMLSGF-VKCGNVEEAFGLFSEMP-CR- 157
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKW------------------------------ 311
+V WN+M++ YA+ G EA+ LF +
Sbjct: 158 --DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLH 215
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ YI + N IV T L+DMYAKCG + LA F+ KDV+ + + G +HG
Sbjct: 216 LHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGH 275
Query: 372 GEEGWVLFHHIRK------------------------------------HGIEPRHQHYA 395
+E LF +++ +GIEP+ +HY
Sbjct: 276 VKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYD 335
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
V+DLLARAG A + I MP+E S ALL +I
Sbjct: 336 CVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRI 375
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 160/363 (44%), Gaps = 64/363 (17%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK 146
+ L +LE L GK +H ++++ E + NA+IS YAK
Sbjct: 279 ASILSACANLEKLNIGKQIHAYILRAETETSG----------------AVGNALISMYAK 322
Query: 147 NGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
+G E A + + N N+I T L+D Y K G+V A F++ D+DV
Sbjct: 323 SGGVEIA--------RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV 374
Query: 206 VMRSAMIVGY---GLHEWSAFGSFDGLLSNE---ENEYGTA--LDCSCDLEFLEQGKIVH 257
V +AMIVGY GL W+ L+ NE N Y A L S L LE GK +H
Sbjct: 375 VAWTAMIVGYVQNGL--WNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
IK G ES P+VT NA+I+ YAK G A ++F D G
Sbjct: 433 ASAIKAG---ESS-----------TPSVT--NALIAMYAKTGNINVAKRVF----DLPNG 472
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----KDVVMRSAMTVGYGLHGLGE 373
K E ++ T +I A+ G A F+R L D + + GL E
Sbjct: 473 KKE----IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVE 528
Query: 374 EGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+G ++ + + H IEP HYA ++DL RAG A+ FI +MPIE +LL++
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLAS 588
Query: 433 WKI 435
KI
Sbjct: 589 CKI 591
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 133/307 (43%), Gaps = 58/307 (18%)
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA 150
C+ + + L+ G+ +H F++KLGL C V + ++++ YAK G
Sbjct: 151 SCAAN-QTLDIGRKIHSFVVKLGL-----------GSC-----VPVATSLLNMYAKCGDP 193
Query: 151 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
A +F + N+ LI +Y + G +LA F++ D+D+V ++
Sbjct: 194 VIAKVVFDRMT---------VKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244
Query: 211 MIVGYGLHEWS--AFGSFDGLLSN-----EENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
MI GY ++ A F +L+ + + L +LE L GK +H ++++
Sbjct: 245 MISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304
Query: 264 GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323
E + NA+IS YAK+G E A + + N
Sbjct: 305 ETETSG----------------AVGNALISMYAKSGGVEIA--------RLIVEHNRTSN 340
Query: 324 -NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
N+I T L+D Y K G+V A F++ D+DVV +AM VGY +GL + LF +
Sbjct: 341 LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLM 400
Query: 383 RKHGIEP 389
G EP
Sbjct: 401 VNEGPEP 407
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 140/344 (40%), Gaps = 86/344 (25%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----LHEWSAFGSFDGLLSN 232
+L++MY K + A FD +++ + +I GY L F +
Sbjct: 77 NILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLP 136
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-RYQPNVTL- 287
+ + + L +E L G +H +IK+GL + S+ L+ + A C R + ++ L
Sbjct: 137 NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELF 196
Query: 288 ----------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE----------------- 320
WN +I G+ + G E+A++LF ++Y + +E
Sbjct: 197 AESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 256
Query: 321 -------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
+ +++V LIDMYAKCGS+ A + FD +D V +AM GY
Sbjct: 257 PGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYS 316
Query: 368 LHGLGEEGWVLFHH------------------------------------IRKHGIEPRH 391
+HGLG E +F I+ HGIEP
Sbjct: 317 MHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCI 376
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +V LL R G+ + A K I +P + + V RALL A I
Sbjct: 377 EHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVI 420
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 110/277 (39%), Gaps = 68/277 (24%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-RYQPNVTLR---- 137
+ + L +E L G +H +IK+GL + S+ L+ + A C R + ++ L
Sbjct: 141 FASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESP 200
Query: 138 -------NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------- 169
N +I G+ + G E+A++LF ++Y + +E
Sbjct: 201 HRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ 260
Query: 170 ---------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ +++V LIDMYAKCGS+ A + FD +D V +AMI GY +H
Sbjct: 261 IHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL 320
Query: 221 --SAFGSFDGLLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIK------------ 262
A FD + E + L + L+QG+ MI+
Sbjct: 321 GREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYT 380
Query: 263 -----LGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
LG D + L +QP+V +W A++
Sbjct: 381 CMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGA 417
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 48/235 (20%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTI 55
V PN T VL+AC + L +G ++H + +G F+ L D G + ++
Sbjct: 134 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 193
Query: 56 -VFLDLYH----LWSRTEWSAFGSFDG-------------LLSNEENEYGTALDCSCDLE 97
+F + H W+ DG + E Y +AL L
Sbjct: 194 ELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLA 253
Query: 98 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPNVTLR------------NAMIS 142
LE G +H +K + + ++ LI + A C + L NAMIS
Sbjct: 254 ALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMIS 313
Query: 143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
GY+ +G EA+++F K + ++E + + + ++ A G +D +F
Sbjct: 314 GYSMHGLGREALRIFDK-----MQETEVKPDKLTFVGVLSACANAGLLDQGQAYF 363
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 160/363 (44%), Gaps = 64/363 (17%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK 146
+ L +LE L GK +H ++++ E + NA+IS YAK
Sbjct: 279 ASILSACANLEKLNIGKQIHAYILRAETETSG----------------AVGNALISMYAK 322
Query: 147 NGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
+G E A + + N N+I T L+D Y K G+V A F++ D+DV
Sbjct: 323 SGGVEIA--------RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDV 374
Query: 206 VMRSAMIVGY---GLHEWSAFGSFDGLLSNE---ENEYGTA--LDCSCDLEFLEQGKIVH 257
V +AMIVGY GL W+ L+ NE N Y A L S L LE GK +H
Sbjct: 375 VAWTAMIVGYVQNGL--WNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
IK G ES P+VT NA+I+ YAK G A ++F D G
Sbjct: 433 ASAIKAG---ESS-----------TPSVT--NALIAMYAKTGNINVAKRVF----DLPNG 472
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----KDVVMRSAMTVGYGLHGLGE 373
K E ++ T +I A+ G A F+R L D + + GL E
Sbjct: 473 KKE----IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVE 528
Query: 374 EGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+G ++ + + H IEP HYA ++DL RAG A+ FI +MPIE +LL++
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLAS 588
Query: 433 WKI 435
KI
Sbjct: 589 CKI 591
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 133/307 (43%), Gaps = 58/307 (18%)
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA 150
C+ + + L+ G+ +H F++KLGL C V + ++++ YAK G
Sbjct: 151 SCAAN-QTLDIGRKIHSFVVKLGL-----------GSC-----VPVATSLLNMYAKCGDP 193
Query: 151 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
A +F + N+ LI +Y + G +LA F++ D+D+V ++
Sbjct: 194 VIAKVVFDRMT---------VKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNS 244
Query: 211 MIVGYGLHEWS--AFGSFDGLLSN-----EENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
MI GY ++ A F +L+ + + L +LE L GK +H ++++
Sbjct: 245 MISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRA 304
Query: 264 GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323
E + NA+IS YAK+G E A + + N
Sbjct: 305 ETETSG----------------AVGNALISMYAKSGGVEIA--------RLIVEHNRTSN 340
Query: 324 -NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
N+I T L+D Y K G+V A F++ D+DVV +AM VGY +GL + LF +
Sbjct: 341 LNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLM 400
Query: 383 RKHGIEP 389
G EP
Sbjct: 401 VNEGPEP 407
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 145/356 (40%), Gaps = 86/356 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
+P+VT N ++SGY + ++ V+LF + +
Sbjct: 378 RPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQ 437
Query: 171 ----------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
N++ V + L+DMY+KCG + +A + F+R ++DVV ++MI G +H
Sbjct: 438 VHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSL 497
Query: 221 S--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDL 271
+ AF F + N E+ Y + ++ L + QG+ +H ++K G +
Sbjct: 498 NEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSA 557
Query: 272 LISLTAV------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319
LI + A C N+ WN MI GYA+NG+ E+AV LF Y+ +
Sbjct: 558 LIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFE-----YMLTT 612
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
E R + + ++ + G VD A FF+ M S
Sbjct: 613 EQRPDGVTFIAVLTGCSHSGLVDEAIAFFNS-------MES------------------- 646
Query: 380 HHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI P +HY ++D L RAG I NMP + V LL+A +
Sbjct: 647 ----TYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAV 698
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/433 (24%), Positives = 170/433 (39%), Gaps = 78/433 (18%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
P T VL AC A+ +L G R HG +G L + LF L +Y
Sbjct: 138 PTHFTLASVLSACGAVAALDDGRRCHGLAVKVG-----LDENLFVEN-ALLGMYTKCGGV 191
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
E A FDG+ S E + TA+ G +V + L L +
Sbjct: 192 E-DAVRLFDGMASPNEVSF-TAM----------MGGLVQAGSVDDALRL-------FARM 232
Query: 128 CRYQPNV-TLRNAMISGYAKNGYAEE--AVKLFP--KWMDYYIGKSEYRNNVIVNTVLID 182
CR V + + + G A E V+ F + + I + + ++ V LID
Sbjct: 233 CRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLID 292
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTA 240
MY KC +D A FD + V + +I G+G GS+ L N E G+
Sbjct: 293 MYTKCMQMDEAVKVFDSLPNISTVSWNILITGFG-----QAGSYAKALEVLNLMEESGS- 346
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300
E ++ + M+ ++ L +P+VT WN ++SGY +
Sbjct: 347 ----------EPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEEL 396
Query: 301 AEEAVKLFPKWMDYYIGKSE------------------------------YRNNVIVNTV 330
++ V+LF + + N++ V +
Sbjct: 397 HQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASG 456
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390
L+DMY+KCG + +A + F+R ++DVV ++M G +H L EE + F +R +G+ P
Sbjct: 457 LVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPT 516
Query: 391 HQHYARVVDLLAR 403
YA +++ AR
Sbjct: 517 ESSYASMINSCAR 529
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 50/242 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQ----------IFSLGFLVCY----- 45
MQ V P+ T ++L +C L L +G +VH + G + Y
Sbjct: 407 MQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQ 466
Query: 46 ------LFDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSN----EENEYGTALD 91
+F+ + +R +V + + S E AF F + N E+ Y + ++
Sbjct: 467 IGIARIIFNRMTERDVVCWNSMISGLAIHSLNE-EAFDFFKQMRGNGMMPTESSYASMIN 525
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTL 136
L + QG+ +H ++K G + LI + A C N+
Sbjct: 526 SCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVA 585
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
N MI GYA+NG+ E+AV LF Y+ +E R + + ++ + G VD A F
Sbjct: 586 WNEMIHGYAQNGFGEKAVDLFE-----YMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAF 640
Query: 197 FD 198
F+
Sbjct: 641 FN 642
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 121/325 (37%), Gaps = 68/325 (20%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
L+ G+ HG +K+GL+ N+ + NA++ Y K G E+AV+LF
Sbjct: 156 LDDGRRCHGLAVKVGLD----------------ENLFVENALLGMYTKCGGVEDAVRLFD 199
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
N + T ++ + GSVD A F R V + +
Sbjct: 200 GMAS---------PNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAV------ 244
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ---GKIVHGFMIKLGLELESDL---L 272
S GS A C+ + + + G+ +H +++ G + + L
Sbjct: 245 -SSVLGS-------------CAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSL 290
Query: 273 ISLTAVCRYQ----------PNVTL--WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
I + C PN++ WN +I+G+ + G +A+++ + +S
Sbjct: 291 IDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVL-----NLMEESG 345
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
N + + ++ K V A FD+ V + + GY L ++ LF
Sbjct: 346 SEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFR 405
Query: 381 HIRKHGIEPRHQHYARVVDLLARAG 405
++ ++P A ++ +R G
Sbjct: 406 RMQHQNVQPDRTTLAVILSSCSRLG 430
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 164/421 (38%), Gaps = 126/421 (29%)
Query: 106 HGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLRNAMISGYAKNGYA 150
H ++ LGL S L LI A+C++ NV L N++I+GYAKN
Sbjct: 46 HSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLY 105
Query: 151 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
EA +LF + C S L F TL K A
Sbjct: 106 NEAFQLFNQM--------------------------CSSDVLPDDFTLSTLSKVSSELGA 139
Query: 211 MIVGYGLHEWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK------ 262
+ G +H S F D +++N ++ C C F E K+ I+
Sbjct: 140 LFSGKSIHGKSIRIGFVSDTVVANSI----MSMYCKCG-NFEESRKVFDEMTIRNSGSWN 194
Query: 263 ---LGLELESDLLISLTAVCRYQ-PNVTLWNAMISGYAKNGYAEEAVKLF---------- 308
G + +L++ R + NV W AMI+GY +NG ++EA+ LF
Sbjct: 195 VLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIE 254
Query: 309 ----------PKWMDY-----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
P + + + E N V + LIDMY+KCGS+D A
Sbjct: 255 PNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRV 314
Query: 348 F-DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH------------------------- 381
F D +L KD + S+M GYGLHG G+E +L+
Sbjct: 315 FEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGL 374
Query: 382 -----------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
I +GIEP + +A +VD+L RAG + A FI MP+E SV AL+
Sbjct: 375 VNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALV 434
Query: 431 S 431
S
Sbjct: 435 S 435
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/467 (23%), Positives = 182/467 (38%), Gaps = 132/467 (28%)
Query: 105 VHGFMIKLGLELESDLLISL-TAVCRY--------------QPNVTLRNAMISGYAKNGY 149
+H F IK GL+ + +L A C++ + NAM+ G +K G
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216
Query: 150 AEEAVKLFPKWMDYYIGKSEY--------------------------RN----NVIVNTV 179
+A++LF I + + R+ NV VN
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGL-LSNE 233
L+D Y+KC +D FD ++D V + +I Y ++ +A F L +
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC----------- 279
Y T L + L + GK +H ++ LGL +L + LI + + C
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396
Query: 280 -RYQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------------- 309
R + + W A+I+GY +NG EEA++LF
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456
Query: 310 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG- 367
+ + Y+ +S Y+++V +VL+DMYAKCG +D A FD +++ + +A+ Y
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516
Query: 368 --------------LH--------------------GLGEEGWVLFHHIR-KHGIEPRHQ 392
LH GL +E FH ++ ++ I P +
Sbjct: 517 YGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 576
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQ 439
HYA V+D L R G + K ++ MP + + ++L + +I Q
Sbjct: 577 HYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 623
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 141/588 (23%), Positives = 215/588 (36%), Gaps = 161/588 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL----VC-----------------YL 46
PN V++AC L ++HG + G++ VC L
Sbjct: 139 PNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLL 198
Query: 47 FDGLFDRT----IVFLDLYHLWSRTEWSAFGSFD----GLLSNEENEYGTALDCSCDLEF 98
FDGL +T + Y R++ S FD G + ++ + L L+F
Sbjct: 199 FDGLQVKTSFTWTTIIAGYSKQGRSQVS-LKLFDQMKEGHVCPDKYVLSSVLSACLMLKF 257
Query: 99 LEQGKIVHGFMIKLGLELESDLL---ISLTAVCR------------YQPNVTLRNAMISG 143
LE GK +H ++++ G+ ++ ++ I C NV +I+G
Sbjct: 258 LEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAG 317
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
+N + +A+ LF + + Y K N+
Sbjct: 318 CMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDND 377
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFD---- 227
V LIDMYAKC S+ A F+ D+V +AMI GY + A F
Sbjct: 378 DFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRL 437
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCR---- 280
L S + + L S L LE +HG +IK G+ L+ LI + + C
Sbjct: 438 SLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGD 497
Query: 281 --------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY----------- 321
++ +W AM SGY + EE++KL+ + +E+
Sbjct: 498 ARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASN 557
Query: 322 ----------RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
N VI V L+DMYAK GS++ A F T KD ++M
Sbjct: 558 IASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSM 617
Query: 363 TVGYGLHGLGEE-----------------------------------GWVLFHHIRKHGI 387
Y HG E+ G+ F + + GI
Sbjct: 618 IATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQFGI 677
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP +HY +V LL RAG A +FI MPI+ V R+LLSA ++
Sbjct: 678 EPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRV 725
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 119/315 (37%), Gaps = 56/315 (17%)
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
L + C +PN + +++ + G A+++ + K Y +V V T
Sbjct: 127 LFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHG-----LVVKGGYVQDVYVCTS 181
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFD----GLLSNE 233
LID Y K +D A + FD K + +I GY S + FD G + +
Sbjct: 182 LIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPD 241
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL---ISLTAVCR---------- 280
+ + L L+FLE GK +H ++++ G+ ++ ++ I C
Sbjct: 242 KYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFD 301
Query: 281 --YQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------------- 309
NV W +I+G +N + +A+ LF
Sbjct: 302 RMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEK 361
Query: 310 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ + Y K N+ V LIDMYAKC S+ A F+ D+V +AM GY
Sbjct: 362 GRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSR 421
Query: 369 HGLGEEGWVLFHHIR 383
E LF +R
Sbjct: 422 QDKLCEALDLFREMR 436
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 108/274 (39%), Gaps = 56/274 (20%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FG 224
+++++ + L+ Y+K V+ A FD K++V S+M+ Y H F
Sbjct: 70 HKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFV 129
Query: 225 SFDGLLSNEENEYGTALDCSCDLEF--LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
F + + NEY A +F L +HG ++K G D+ + + + Y
Sbjct: 130 QFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYV--QDVYVCTSLIDFYT 187
Query: 283 PNVTL-----------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY---- 321
+ + W +I+GY+K G ++ ++KLF + + ++ +Y
Sbjct: 188 KHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSS 247
Query: 322 ----------------------RNNVIVNTVL----IDMYAKCGSVDLAPMFFDRTLDKD 355
R+ ++++ + ID Y KC V L FDR +DK+
Sbjct: 248 VLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKN 307
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
VV + + G + + LF + + G P
Sbjct: 308 VVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNP 341
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 150/380 (39%), Gaps = 99/380 (26%)
Query: 103 KIVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNVTLRNAMISGYAKN 147
K +H ++K L S L+ + VC + PN L NAMI Y N
Sbjct: 31 KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90
Query: 148 --------------GYAEEAVKLFPK-------------WMDYYIGKSEY--------RN 172
G++ +FP M Y +GK + ++
Sbjct: 91 KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV--------------MRSAMIVGYGLH 218
N +V L++MY KC S+D A F+ ++D V MR A + +
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
+ + F S+ ++S + C D LEF + ++V G+E + L+S+
Sbjct: 211 DKTIF-SWTAIVSGY-----ARIGCYADALEFFRRMQMV-------GIEPDEISLVSVLP 257
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
C A+ G E KW+ +Y K+ + N+ V LI+MYAK
Sbjct: 258 AC----------------AQLGALE-----LGKWIHFYADKAGFLRNICVCNALIEMYAK 296
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397
CGS+D FD+ ++DV+ S M VG HG E LF ++K IEP + +
Sbjct: 297 CGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGL 356
Query: 398 VDLLARAGYSNHAFKFIMNM 417
+ A AG N ++ +M
Sbjct: 357 LSACAHAGLLNEGLRYFESM 376
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 146/339 (43%), Gaps = 83/339 (24%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
V L+++Y + GS++ A F+ K+ V+ MI GY L+ FG F+ L +
Sbjct: 99 VAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGY-LNFSEEFGVFE--LFSRMR 155
Query: 236 EYGTALD--------CSCDLEFL-EQGKIVHGFMIKLGLELES----DLLISLTAVCRYQ 282
G LD +C + ++GK HG G E D + L Y+
Sbjct: 156 RSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLYFSSGYVYEVRGFLDXALXLFEXIXYR 215
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKSE 320
BV +W+A+I+G+A+NG A E++ +F + + + G+S
Sbjct: 216 -BVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSV 274
Query: 321 Y----RNNVIVN----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ RN V ++ T IDMYAKCG + A F + +K+V S M G+G+HGL
Sbjct: 275 HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLC 334
Query: 373 -----------------------------------EEGWVLFHHI-RKHGIEPRHQHYAR 396
EEGW F + R +GI P +HYA
Sbjct: 335 AEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYAC 394
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAG + A FI NMP E S ALL A +I
Sbjct: 395 MVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRI 433
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 37/176 (21%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS- 74
+++AC + + G HG FS G++ Y G D + + WSA +
Sbjct: 169 LIQACGNVYAGKEGKTFHGLYFSSGYV--YEVRGFLDXALXLFEXIXYRBVVVWSAIIAG 226
Query: 75 ------------------FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
D + N L CS L L+QG+ VHG+MI+ G+EL
Sbjct: 227 FARNGRALESISMFRQMLADSVTPNSVTFASIVLACS-SLGSLKQGRSVHGYMIRNGVEL 285
Query: 117 ESD--------------LLISLTAVCRY-QPNVTLRNAMISGYAKNGYAEEAVKLF 157
+ ++ + C+ + NV + MI+G+ +G EA+ LF
Sbjct: 286 DVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLF 341
>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 891
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 157/390 (40%), Gaps = 101/390 (25%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV N MI GYA+NG +EA+ LF G+ RN V NTV+ + A CG +D
Sbjct: 138 NVVSWNTMIDGYARNGRTQEALDLF--------GRMPERNVVSWNTVMTAL-AHCGRIDD 188
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD-----GLLSNEENEYGTALDCSC 245
A F+ ++DVV + M+ G + +A FD ++S G A +
Sbjct: 189 AERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQNGRF 248
Query: 246 D--LEFLEQ---------GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
D L+ E+ +V GF+ L L ++ Q NV W AM++G
Sbjct: 249 DEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMP-----QKNVITWTAMMTG 303
Query: 295 YAKNGYAEEAVKLFPK-------------------------------WMDYYIGKSEYRN 323
Y ++G +EEA+KLF K + I K+ ++
Sbjct: 304 YVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQE 363
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ V + LI+MY+KCG +A FD L D++ + M Y HG G E LF+
Sbjct: 364 STYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNK 423
Query: 382 IRKHG------------------------------------IEPRHQHYARVVDLLARAG 405
+++ G I+ R HY ++DL RAG
Sbjct: 424 MQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAG 483
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ A I + E+ LS+ ALL+ +
Sbjct: 484 RLDEALNIIEGLGKEVSLSLWGALLAGCSV 513
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 122/277 (44%), Gaps = 31/277 (11%)
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
L MISGY K G EA KLF + + + +VIV T ++ Y K ++ A
Sbjct: 78 LWTTMISGYIKCGLINEARKLFDR--------PDAQKSVIVWTAMVSGYIKMNRIEEAER 129
Query: 196 FFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253
F+ ++VV + MI GY + A F + + T + ++
Sbjct: 130 LFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRIDDA 189
Query: 254 KIVHGFMIKLGLELESDLLISLTAVCRYQP-----------NVTLWNAMISGYAKNGYAE 302
+ + M + + + ++ L+ R NV WNAMI+GYA+NG +
Sbjct: 190 ERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQNGRFD 249
Query: 303 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
EA+KLF + + R+ NT ++ + + G ++ A F K+V+ +AM
Sbjct: 250 EALKLFERMPE--------RDMPSWNT-MVTGFIQNGDLNRAEQLFHAMPQKNVITWTAM 300
Query: 363 TVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVV 398
GY HGL EE LF+ ++ + G++P + V+
Sbjct: 301 MTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVL 337
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
Q +V +W AM+SGY K EEA +LF + RN V NT +ID YA+ G
Sbjct: 105 QKSVIVWTAMVSGYIKMNRIEEAERLF--------NEMPVRNVVSWNT-MIDGYARNGRT 155
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
A F R +++VV + + G ++ LF+ +R+ + + +V L
Sbjct: 156 QEALDLFGRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVS----WTTMVAGL 211
Query: 402 ARAGYSNHAFKFIMNMPI 419
++ G + A + MPI
Sbjct: 212 SKNGRVDAAREVFDKMPI 229
>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
Length = 655
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 153/383 (39%), Gaps = 98/383 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
P ++ NA++SGY + GY A LF G+ + RN V N V+I YA+ GS+
Sbjct: 186 SPPTSVCNALLSGYVELGYMRAAEVLF--------GQMQTRNPVSWN-VMITGYARAGSM 236
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLH-----EWSAFGSF------------DGLLSNE 233
+A FD +KDV+ R+A++ GY + W F DG + N+
Sbjct: 237 GIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRND 296
Query: 234 ENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLWNA 290
+ L D + + I+ G++ + ++ S A R PN WN
Sbjct: 297 RLDDALKLFSEMPDRDQISWNAILQGYVQQGDMD-------SANAWFRRAPNKDAISWNT 349
Query: 291 MISGYAKNG---YAEEAVK--LFP---------------------KWMDYYIGKSEYRNN 324
+ISGY G E ++ L P K + + K+ + ++
Sbjct: 350 LISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHD 409
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+V + LI MY+KCG + A F+ L +D V +AM Y HGL +E +F + K
Sbjct: 410 ALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTK 469
Query: 385 HGIEPRH------------------------------------QHYARVVDLLARAGYSN 408
G P H HY+ +VDLL R+G+ +
Sbjct: 470 AGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIH 529
Query: 409 HAFKFIMNMPIELRLSVRRALLS 431
A+ F +P + R + L S
Sbjct: 530 QAYDFTRRIPSDHRTTAWETLFS 552
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 132/296 (44%), Gaps = 44/296 (14%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ NV N M+SG +N EA K+F RN+V L+ YA+CG V
Sbjct: 62 ERNVFTWNCMVSGLIRNRMLAEARKVF--------DAMPVRNSVSW-AALLTGYARCGRV 112
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A F+R D++VV +AM+ GY +G++ E + D+ +L
Sbjct: 113 AEARELFNRIPDRNVVSWNAMVSGYAR---------NGMV-KRARELFDMMPWRDDVSWL 162
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G++ + + +L S+ + P ++ NA++SGY + GY A LF
Sbjct: 163 ---TMISGYIKRKHVREARELFDSMPS-----PPTSVCNALLSGYVELGYMRAAEVLF-- 212
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
G+ + RN V N V+I YA+ GS+ +A FD +KDV+ R+A+ GY +G
Sbjct: 213 ------GQMQTRNPVSWN-VMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNG 265
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYA--RVVDLLARAGYSNHAFKFIMNMPIELRLS 424
+ W +F + P A ++D R + A K MP ++S
Sbjct: 266 SVDAAWKVFKDM------PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQIS 315
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/422 (24%), Positives = 163/422 (38%), Gaps = 129/422 (30%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW------------------------------MDYYIGK 167
NAM+SG +N A EAV LF + M Y K
Sbjct: 139 NAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVK 198
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGS 225
+ + V +ID+Y K G ++ FD +D+V +++I G+ G SA
Sbjct: 199 HGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEM 258
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQ---------GKIVHGFMIKLGLELES------- 269
F G+ + G + D L G+ VH +M++ G ++
Sbjct: 259 FCGM-----RDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAI 313
Query: 270 -DLLISLTAVCRYQP--------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------ 314
D+ L+ + Q + WN +I+GY +NG A EA+ ++ +
Sbjct: 314 VDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPI 373
Query: 315 ------------YIG-------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
++G K+ +V V T +ID+YAKCG +D A + F+
Sbjct: 374 QGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFE 433
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------ 391
+T + +A+ G G+HG G + LF +++ GI P H
Sbjct: 434 QTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQ 493
Query: 392 ------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+HYA +VD+ RAG + AF FI NMPI+ ++ ALL A
Sbjct: 494 GRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGAC 553
Query: 434 KI 435
+I
Sbjct: 554 RI 555
>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
Length = 1866
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 167/415 (40%), Gaps = 98/415 (23%)
Query: 118 SDLLISLTAVCRYQPNVTLRNAMI-SGYAKNGYAEEAV---------KLFPKWMDYYIGK 167
+ L+ LT R +T N M SG N Y AV + + M + K
Sbjct: 99 TSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWK 158
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFG 224
+ V V + L+DMYAKC + +A F+ +++V + MIVG+ L++ + F
Sbjct: 159 HGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFF 218
Query: 225 SFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLG---LELESDLLISLTA 277
LL N +E + + + LE GK VHG +KLG L ++ L +
Sbjct: 219 FKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYG 278
Query: 278 VCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-- 314
C +V WN MI Y N E+A F P Y
Sbjct: 279 KCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSS 338
Query: 315 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
I +S + N+ V + LI MYAKCGS+ A F+ T D++
Sbjct: 339 VLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRN 398
Query: 356 VVMRSAMTVGYGLHGLG-----------------------------------EEGWVLFH 380
VV +A+ HG EEG+ F+
Sbjct: 399 VVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFN 458
Query: 381 H-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I+ HGI P H+HYA +VDLL+RAG + A +FI MPI+ SV ALLSA +
Sbjct: 459 SMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACR 513
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 331 LIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
L+++YAKCGSVD + F D K+VV +++ + F+H+R+ G+
Sbjct: 68 LLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVY 127
Query: 389 PRHQHYARVVDLLARAGYSNH 409
P H ++ V+ S H
Sbjct: 128 PNHYTFSAVLSACTDTTASVH 148
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 139/340 (40%), Gaps = 68/340 (20%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
Q NV +MISGYA N + A KLF D N + T ++ Y + G +
Sbjct: 199 QRNVVAWTSMISGYAMNNKVDVARKLFEVMPD---------KNEVTWTAMLKGYTRSGRI 249
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLE 248
+ A F K V + MI+G+GL+ A FD + ++ + +
Sbjct: 250 NEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALI------- 302
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
KI + G ELE+ L SL +PN +++S + ++
Sbjct: 303 -----KIYE----RKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVH 353
Query: 309 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ + +S + ++ V++VLI MY KCG + FDR KD+VM +++ GY
Sbjct: 354 SQLV-----RSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQ 408
Query: 369 HGLGEEGWVLFHHIRKHGIEP------------------------------------RHQ 392
HG GE+ +FH + G P + +
Sbjct: 409 HGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTE 468
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
HYA +VDLL RAG N A I NMP+E V ALLSA
Sbjct: 469 HYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSA 508
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 37/249 (14%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ N N ++SGY KNG EA K+F K + NV+ T ++ Y + G +
Sbjct: 75 ERNTISWNGLVSGYVKNGMISEARKVFDKMPE---------RNVVSWTSMVRGYVQEGLI 125
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
D A + F R +K+VV + M+ GL E DG + +E D + +
Sbjct: 126 DEAELLFWRMPEKNVVSWTVML--GGLIE-------DGRV----DEARRLFDMIPVKDVV 172
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G + L ++ + Q NV W +MISGYA N + A KLF
Sbjct: 173 ASTNMIGGLCSEGRLSEAREIFDEMP-----QRNVVAWTSMISGYAMNNKVDVARKLFEV 227
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
D N + T ++ Y + G ++ A F K V + M +G+GL+G
Sbjct: 228 MPD---------KNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNG 278
Query: 371 -LGEEGWVL 378
+G+ WV
Sbjct: 279 EVGKARWVF 287
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
VT WNA+++GY N EA KLF K + RN + N L+ Y K G +
Sbjct: 46 TVTSWNAIVAGYFHNKRPAEAQKLFDKMPE--------RNTISWNG-LVSGYVKNGMISE 96
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
A FD+ +++VV ++M GY GL +E +LF
Sbjct: 97 ARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLF 132
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 27/221 (12%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
+S + ++ + I +A+ G +D A FD K V +A++ GY ++ A
Sbjct: 9 RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPA---- 64
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
E D + + +V G+ +K G+ E+ + + NV
Sbjct: 65 ---------EAQKLFDKMPERNTISWNGLVSGY-VKNGMISEARKVFDKMP----ERNVV 110
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
W +M+ GY + G +EA LF + + NV+ TV++ + G VD A
Sbjct: 111 SWTSMVRGYVQEGLIDEAELLFWRMPE---------KNVVSWTVMLGGLIEDGRVDEARR 161
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
FD KDVV + M G G E +F + + +
Sbjct: 162 LFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNV 202
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 146/352 (41%), Gaps = 94/352 (26%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
Y +V V + L+ +Y++CG++ A FD KD V S M+ G+ SA + L
Sbjct: 142 YGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGF----VSAGRPVEAL 197
Query: 230 -LSNEENEYGTALD--------CSCDLE-FLEQGKIVHGFMIKLGLELESDLLISLT--- 276
+ + E+G A D +C L G VHG ++ G+ ++ + SL
Sbjct: 198 GMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMY 257
Query: 277 ----------AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMD----------- 313
V R P N WNA+ISG+A+NG+A+EA+ LF +
Sbjct: 258 AKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALV 317
Query: 314 -----------YYIGKS-------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+GKS I+ T ++DMY+KCGS++ A F++ +D
Sbjct: 318 SALLACADVGFLKLGKSIHGFILRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRD 377
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYAR------------------- 396
+V+ +AM G HG G + LF + + GI+P H +A
Sbjct: 378 LVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFD 437
Query: 397 -----------------VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
VVDLLAR+G A + + +M E + + ALLS
Sbjct: 438 RMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLS 489
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 97/396 (24%), Positives = 145/396 (36%), Gaps = 107/396 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLYHL 63
P+ T L L AC L L V + F+ G+ VC ++ R D +
Sbjct: 109 PDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRV 168
Query: 64 WS------RTEWSAFGSFDGLLS-----------NEENEYGTALD--------CSCDLE- 97
+ WS G +S + E+G A D +C L
Sbjct: 169 FDGMPRKDHVAWSTM--VAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTG 226
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLT-------------AVCRYQP--NVTLRNAMIS 142
G VHG ++ G+ ++ + SL V R P N NA+IS
Sbjct: 227 NTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALIS 286
Query: 143 GYAKNGYAEEAVKLFPKWMD----------------------YYIGKS-------EYRNN 173
G+A+NG+A+EA+ LF + +GKS
Sbjct: 287 GFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQ 346
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL-LSN 232
I+ T ++DMY+KCGS++ A F++ +D+V+ +AMI G H D L L
Sbjct: 347 CILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGC----GHDALALFQ 402
Query: 233 EENEYGTALDCSCDLEFL---------EQGKIVHGFMI-KLGLELES-------DLLI-- 273
E NE G D + L E+GK MI + G+E DLL
Sbjct: 403 ELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARS 462
Query: 274 -------SLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
+ A +P + +W A++SG N E
Sbjct: 463 GLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLE 498
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 107/268 (39%), Gaps = 53/268 (19%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
NA+++ ++ G A+++F S R + T+ + A+ G +D A
Sbjct: 81 NALLAARSRAGSPGAALRVFRAL------PSSARPDSTTFTLALTACARLGDLDAAEAVR 134
Query: 198 DRTL----DKDVVMRSAMIVGYGLHEWSAFGS-------FDGLLSNEENEYGTALDCSCD 246
R +DV + SA+ LH +S G+ FDG+ + + T +
Sbjct: 135 VRAFAAGYGRDVFVCSAL-----LHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMV----- 184
Query: 247 LEFLEQGKIVHGF-----MIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA 301
F+ G+ V M + G+ + +++ + C N + ++ + ++G
Sbjct: 185 AGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGM- 243
Query: 302 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
R +V++ T L+DMYAK G D+A F ++ V +A
Sbjct: 244 --------------------RMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNA 283
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ G+ +G +E LF + G++P
Sbjct: 284 LISGFAQNGHADEALDLFREMSTSGLQP 311
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 148/357 (41%), Gaps = 91/357 (25%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI---------------- 175
P++ L A I+ + NG ++A L+ + + I +E+ + I
Sbjct: 91 PDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKLIHTHV 150
Query: 176 ----------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAF 223
V T L+D+YAK G V A FDR ++ +V +AMI Y +A
Sbjct: 151 LKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 210
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI---SLTAVCR 280
FD + + + +D G HGF SD L+ L A +
Sbjct: 211 ALFDRMCERDIVSWNVMID----------GYSQHGF--------PSDALMLFQKLLADGK 252
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+P+ A +S ++ G E +W+ ++ S R NV V T LIDMY+KCGS
Sbjct: 253 PKPDEITVVAALSACSQIGALETG-----RWIHVFVNSSRIRLNVKVCTALIDMYSKCGS 307
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR----------------- 383
++ A + F+ T KD+V +AM GY +HG ++ LF ++
Sbjct: 308 LEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQ 367
Query: 384 --------------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
++GI+P+ +HY +V LL RAG A++ I NM +E
Sbjct: 368 ACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNME 424
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/459 (23%), Positives = 158/459 (34%), Gaps = 169/459 (36%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLR 137
D Q K VH +I+ GL S +L L + PN L
Sbjct: 51 DCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLW 110
Query: 138 NAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGKSEYRNNVI 175
AMI GYA G E+ + + ++ +GK + ++
Sbjct: 111 TAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTIL 170
Query: 176 ---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFG 224
V +ID+Y KCG + A FD ++DVV + +IV Y + SA G
Sbjct: 171 IGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASG 230
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
FD L S +
Sbjct: 231 LFDDLPSKD--------------------------------------------------- 239
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDY-----------------YIGKSEYRN---- 323
+ W AM++GYA+NG +EA++ F K D +G ++ N
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRD 299
Query: 324 -----------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
NV+V + LIDMY+KCGS D A F+ +++V S+M +GY +HG
Sbjct: 300 IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRA 359
Query: 373 EEGWVLFHHIRK------------------------------------HGIEPRHQHYAR 396
LFH + K G+ P HYA
Sbjct: 360 HSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC 419
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAG A + MP+E V ALL A +I
Sbjct: 420 MVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRI 458
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 62/241 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDY-----------------YIGKSEYRN-------- 172
AM++GYA+NG +EA++ F K D +G ++ N
Sbjct: 244 TAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAER 303
Query: 173 -------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAF 223
NV+V + LIDMY+KCGS D A F+ +++V S+MI+GY +H SA
Sbjct: 304 SGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSAL 363
Query: 224 GSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES--------DL 271
F +L E + + L +EQG+ + M K S DL
Sbjct: 364 QLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDL 423
Query: 272 L---------ISLTAVCRYQPNVTLWNAMISGYAKNG-------YAEEAVKLFPKWMDYY 315
L + L +PN +W A++ +G A E KL P + Y
Sbjct: 424 LGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNY 483
Query: 316 I 316
I
Sbjct: 484 I 484
>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 556
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 179/447 (40%), Gaps = 95/447 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLD 59
M+ + V PN T VL AC + + G ++H ++ GFL ++ L D D
Sbjct: 1 MRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCD 60
Query: 60 LYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 119
+ E + L + +E + + + LE GK VHG +KLG+
Sbjct: 61 MLMAEKVFEEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGV----- 115
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
W YI N
Sbjct: 116 ----------------------------------------WNLVYI-----------NNS 124
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL-HEWS-AFGSF-----DGLLSN 232
L DMY KCG + F T +DVV + MI+ Y H + A SF G + +
Sbjct: 125 LSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPD 184
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
E + Y + L +L L QG ++H +I+ G + N+ + +++I
Sbjct: 185 EAS-YSSVLHSCANLAALYQGTLIHNQIIRSG----------------FVKNLRVASSLI 227
Query: 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ YAK G +A ++F + D NV+ T +I + G + F++ L
Sbjct: 228 TMYAKCGSLVDAFQIFEETED---------RNVVCWTAIIAACQQHGHANWVVELFEQML 278
Query: 353 DK----DVVMRSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYS 407
+ D + ++ G EEG+ F+ I+ HGI P H+HYA +VDLL+RAG
Sbjct: 279 REGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGEL 338
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWK 434
+ A +FI MPI+ SV ALLSA +
Sbjct: 339 DRAKRFIELMPIKPDASVWGALLSACR 365
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 186/471 (39%), Gaps = 136/471 (28%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
L G+IVH I++G EL+ S L+ + + C P+V +A+I+
Sbjct: 346 LRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITC 405
Query: 144 YAKNGYAEEAVKLFPKWM----------------------DYYIGKS----------EYR 171
+ G + EA ++F + D Y G+S EY
Sbjct: 406 LDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYD 465
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG--SFDGL 229
N V L+ MY K GSV F+ T ++D++ +A++ G+ +E G F+ +
Sbjct: 466 NTVC--NALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQM 523
Query: 230 LSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY- 281
L+ N + + L L ++ GK VH ++K L+ L+ + A R+
Sbjct: 524 LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFL 583
Query: 282 -----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------- 321
+ ++ W +++GYA++G E+AVK F + + +E+
Sbjct: 584 EDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 643
Query: 322 ---------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
++ V + L+DMYAKCG V+ A + FD + +D V +
Sbjct: 644 SRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWN 703
Query: 361 AMTVGYGLHGLG-----------------------------------EEGWVLFHHIRK- 384
+ GY HG G EEG F+ + K
Sbjct: 704 TIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKI 763
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI P +HYA +VD+L RAG + FI M + + + +L A K+
Sbjct: 764 YGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKM 814
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 162/410 (39%), Gaps = 106/410 (25%)
Query: 82 EENE--YGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV----------- 127
E NE Y TAL CS L+ LE GK VH IK+G SDL + V
Sbjct: 226 EANEFTYATALKACSMCLD-LEFGKQVHAEAIKVG--DFSDLFVGSALVDLYAKCGEMVL 282
Query: 128 ------CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY----------- 170
C + N NA+++G+A+ G AE+ + LF + I S++
Sbjct: 283 AERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCAN 342
Query: 171 ----RNNVIVNTV---------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
R IV+++ L+DMY+KCG A F R D DVV SA+
Sbjct: 343 SGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAI 402
Query: 212 IV-----GYGLHEWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 264
I G F G++ N+ + + + DL L G+ +H + K G
Sbjct: 403 ITCLDQKGQSREAAEVFKRMRHSGVIPNQFT-LASLVSAATDLGDLYYGESIHACVCKYG 461
Query: 265 LELESDLLISLTAV----------CRY-----QPNVTLWNAMISGYAKNGYAEEAVKLFP 309
E ++ + +L + CR ++ WNA++SG+ N + +++F
Sbjct: 462 FEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFN 521
Query: 310 ------------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
K + I K+ N V T L+DMYAK
Sbjct: 522 QMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNR 581
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
++ A F+R + +D+ + + GY G GE+ F +++ G++P
Sbjct: 582 FLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKP 631
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 118/274 (43%), Gaps = 59/274 (21%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV-----GYGLHEWSAFGSF--DGLLSN 232
L+++YAKCGS + A F ++DVV +A+I GYG + F +G+ +N
Sbjct: 169 LVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEAN 228
Query: 233 EENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV------------- 278
E Y TAL CS L+ LE GK VH IK+G SDL + V
Sbjct: 229 EFT-YATALKACSMCLD-LEFGKQVHAEAIKVG--DFSDLFVGSALVDLYAKCGEMVLAE 284
Query: 279 ----CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------- 321
C + N WNA+++G+A+ G AE+ + LF + I S++
Sbjct: 285 RVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSG 344
Query: 322 --RNNVIVNTV---------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
R IV+++ L+DMY+KCG A F R D DVV SA+
Sbjct: 345 NLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIIT 404
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
G E +F +R G+ P A +V
Sbjct: 405 CLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLV 438
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 152/389 (39%), Gaps = 100/389 (25%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAV----------CRYQPNVTLRN-----AMISG 143
L +GK +HG +IK G+ +S L SL V C+ + R+ A+I+G
Sbjct: 144 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 203
Query: 144 YAKNGYAEEAVKLFPKW----------------------MDYYIGKSEYR--------NN 173
+ GY AV LF + +D GK + ++
Sbjct: 204 FVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSD 263
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLS 231
+ V + L+D+YAKCG + LA F ++ V +A++ G+ F +
Sbjct: 264 LFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTG 323
Query: 232 NEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY--- 281
+E N T L + L G+IVH I++G EL+ S L+ + + C
Sbjct: 324 SEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGD 383
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-------------------- 312
P+V W+A+I+ + G + EA ++F +
Sbjct: 384 ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443
Query: 313 --DYYIGKS----------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
D Y G+S EY N V L+ MY K GSV F+ T ++D++ +
Sbjct: 444 LGDLYYGESIHACVCKYGFEYDNTVC--NALVTMYMKIGSVQDGCRVFEATTNRDLISWN 501
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
A+ G+ + + G +F+ + G P
Sbjct: 502 ALLSGFHDNETCDTGLRIFNQMLAEGFNP 530
>gi|356546597|ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Glycine max]
Length = 525
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/445 (25%), Positives = 191/445 (42%), Gaps = 81/445 (18%)
Query: 29 GPRVHGQIFSLGF----------LVCYL-----------FDGLFDRTIV---FLDLYHLW 64
G ++H I GF L+ YL FD L DRT+ ++ +L
Sbjct: 55 GQKIHSSILKSGFVPNTNISIKLLILYLKCNCLRYARQVFDDLRDRTLSAYNYMISGYLK 114
Query: 65 SRTEWSAFGSFDGLLSNEENEYG-------TALDCSCDLEFL-EQGKIVHGFMIKLGLEL 116
+ G LL + E G A C++ L + G++VH ++K +E
Sbjct: 115 QDQVEESLGLVHRLLVSGEKPDGFTFSMILKASTSGCNVALLGDLGRMVHTQILKSDIER 174
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
+ L A+I Y KNG A +F + NV+
Sbjct: 175 DE----------------VLCTALIDSYVKNGRVAYARTVFDVMSE---------KNVVC 209
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE 236
+T LI Y GS++ A F +T+DKDVV +AMI GY A S + + +
Sbjct: 210 STSLISGYMNQGSIEDAECIFLKTMDKDVVAFNAMIEGYSKTSEYAMRSLEVYIDMQRLN 269
Query: 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA 296
+ + S + ++ F ++G +++S L+ + + ++ L +A+I YA
Sbjct: 270 FRP--NVSTFASVIGACSMLAAF--EIGQQVQSQLMKT-----PFYADIKLGSALIDMYA 320
Query: 297 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
K G +A ++F + + NV T +ID Y K G D A F + +
Sbjct: 321 KCGRVVDARRVFDCML---------KKNVFSWTSMIDGYGKNGFPDEALQLFGKIQTEYG 371
Query: 357 VMRSAMTVGYGLH-----GLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHA 410
++ + +T L GL ++GW +F + ++ ++P +HYA +VDLL RAG N A
Sbjct: 372 IVPNYVTFLSALSACAHAGLVDKGWEIFQSMENEYLVKPGMEHYACMVDLLGRAGMLNQA 431
Query: 411 FKFIMNMPIELRLSVRRALLSAWKI 435
++F+M MP L V ALLS+ ++
Sbjct: 432 WEFVMRMPERPNLDVWAALLSSCRL 456
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 102 GKIVHGFMIKLGLELESDLLISLT----------------AVCRYQPNVTLRNAMISGYA 145
G +VH ++K G E +S ++ SL +C + +V NAMI GY
Sbjct: 214 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSAR-DVVSWNAMIDGYV 272
Query: 146 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
K+ A +F + + +VI +I+ YA G +D A FD ++++
Sbjct: 273 KHVEMGHARMVFDRMVC---------RDVISWNTMINGYAIVGKIDEAKRLFDEMPERNL 323
Query: 206 VMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262
V ++M+ G+ G E AFG F + + + + L C + + M
Sbjct: 324 VSWNSMLAGFVKCGNVE-DAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRA 382
Query: 263 LGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 322
+G++ ++SL + C A G ++ + L YI +
Sbjct: 383 VGVKPTEATVVSLLSAC----------------AHLGALDKGLHLH-----TYINDNRIE 421
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
N IV T L+DMYAKCG + LA F+ KDV+ + + G +HG +E LF +
Sbjct: 422 VNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEM 481
Query: 383 RK------------------------------------HGIEPRHQHYARVVDLLARAGY 406
++ +GIEP+ +HY V+DLLARAG+
Sbjct: 482 KEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGF 541
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A + I MP+E S ALL +I
Sbjct: 542 LEEAMELIGTMPMEPNPSALGALLGGCRI 570
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 111/458 (24%), Positives = 187/458 (40%), Gaps = 119/458 (25%)
Query: 71 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 126
+ GSF G+L++ + N + + L L L G+ +HG++I++GL+ DL
Sbjct: 90 SLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDF--DLYTG--- 144
Query: 127 VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
NA+++ Y+K + EE+ + + + +E +V +VL
Sbjct: 145 -----------NALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL------ 187
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS-----AFGSFDGLLSNEENEYG 238
S D F+ +KD+V + +I G GL+E + G + L +
Sbjct: 188 --SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN--LKPDSFTLS 243
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQP 283
+ L + + +GK +HG I+ GL+ + + LI + A C +
Sbjct: 244 SVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER 303
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-------------------- 314
+ WN++I+G +NG +E ++ F PK +
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363
Query: 315 -YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
YI ++ + N+ + + L+DMYAKCG++ A FDR +D+V +AM +G LHG
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423
Query: 374 EGWVLFHHIRKHGIEPRH------------------------------------QHYARV 397
+ LF + GI+P H +HYA V
Sbjct: 424 DAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAV 483
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLL RAG A+ FI M I S+ LLSA ++
Sbjct: 484 SDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRV 521
>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Glycine max]
Length = 828
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 114/495 (23%), Positives = 189/495 (38%), Gaps = 138/495 (27%)
Query: 99 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLRNAMISG 143
L K VHG++I+ + ++ L LI + C Y P+ +MIS
Sbjct: 219 LRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISS 278
Query: 144 YAKNGYAEEAVKLFPKWMDYYI----------------------GKSEY---------RN 172
+NG EEA+ F K + + GKS +
Sbjct: 279 CNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGA 338
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL 229
++ + L+D YA C + + VV + +I Y GL+E A F +
Sbjct: 339 DLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNE-EAMVLFVCM 397
Query: 230 LSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVCRY-- 281
L + +++ + G+ +HG + K G E + L+ + + C +
Sbjct: 398 LEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFADEFVQNSLMDMYSKCGFVD 457
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
+ ++ WN MI G+++NG + EA+KLF
Sbjct: 458 LAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACS 517
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
KW+ + + S + ++ ++T L+DMYAKCG + A F+ +K VV SA
Sbjct: 518 NSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSA 577
Query: 362 MTVGYGLHGL-----------------------------------GEEGWVLFHHIRKHG 386
M YG+HG EEG F+ +R +G
Sbjct: 578 MIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYG 637
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIP-----MQQWE 441
I P +H+A +VDLL+RAG + A++ I + + S+ ALL+ +I +
Sbjct: 638 IVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLNGCRIHGRMDLIHNIH 697
Query: 442 NMLQTIRGIDEGEKT 456
L+ IR D G T
Sbjct: 698 KELREIRTNDTGYYT 712
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 35/214 (16%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFD--RTIVFLDLYHLWS 65
P+ + + AC S+ G ++HG + GF ++ + L D F+DL
Sbjct: 404 PDSFSLASSISACAGASSVRFGQQIHGHVTKRGFADEFVQNSLMDMYSKCGFVDL----- 458
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLISL 124
A+ FD + + ++ GF + G+ +E+ L +
Sbjct: 459 -----AYTIFDKIWEK---------------SIVTWNCMICGFS-QNGISVEALKLFDEM 497
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
C VT +A I + +GY L KW+ + + S + ++ ++T L+DMY
Sbjct: 498 CFNCMDINEVTFLSA-IQACSNSGYL-----LKGKWIHHKLVVSGVQKDLYIDTALVDMY 551
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
AKCG + A F+ +K VV SAMI YG+H
Sbjct: 552 AKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGIH 585
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 114/301 (37%), Gaps = 58/301 (19%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------G 216
I K+ + ++ T L+ MY + G + A FD +D+V S+++ Y G
Sbjct: 128 IVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREG 187
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LI 273
L E + +G+ + A C + L K VHG++I+ + ++ L LI
Sbjct: 188 L-EMLRWMVSEGVGPDSVTMLSVAEACG-KVGCLRLAKSVHGYVIRKEMAGDASLRNSLI 245
Query: 274 SLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----- 316
+ C Y P+ W +MIS +NG EEA+ F K + +
Sbjct: 246 VMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAV 305
Query: 317 -----------------GKSEY---------RNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
GKS + ++ + L+D YA C +
Sbjct: 306 TMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISSCEKLLCL 365
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
+ VV + + Y GL EE VLF + + G+ P ++ + A AG S+
Sbjct: 366 IGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMP--DSFSLASSISACAGASSVR 423
Query: 411 F 411
F
Sbjct: 424 F 424
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 170/431 (39%), Gaps = 118/431 (27%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR---YQPNVTLR------ 137
L L F+++G +HGF+ K G+ + + LI L C Y V R
Sbjct: 128 LKACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDS 187
Query: 138 ---NAMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYA-KCGSV 190
N+MI GY K G E A LF PK + N+I +I YA + V
Sbjct: 188 VSYNSMIDGYVKCGMIESARGLFDLMPK----------EKKNLISWNFMISGYAQRADGV 237
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLE 248
++A FD +KD++ +++I GY H A F+ + + + T +D L
Sbjct: 238 NVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLG 297
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
F+ Q K ++ L +V +N+MI+GY +N Y +EA+ +F
Sbjct: 298 FVHQAK---SLFDRMPLR-----------------DVVAYNSMITGYVQNRYHKEAIGIF 337
Query: 309 -----------------------------PKWMD--YYIGKSEYRNNVIVNTVLIDMYAK 337
K +D YI +++R + LID Y+K
Sbjct: 338 NDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSK 397
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI--------------- 382
CGS+ + F+ +K + +AM G +HGLGE + + I
Sbjct: 398 CGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGV 457
Query: 383 ---------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
RKH IEP+ QHY +VD+L+R+G A I MPIE
Sbjct: 458 LNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEP 517
Query: 422 RLSVRRALLSA 432
+ R L+A
Sbjct: 518 NDVIWRTFLTA 528
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 169/451 (37%), Gaps = 159/451 (35%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------------QPNVTLRNAM 140
L+ K VH +++LGL+ +S LL V R+ +PN+ L N M
Sbjct: 23 LKHLKHVHAALLRLGLDEDSYLL---NKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79
Query: 141 ISGYAKNGYAEEAVKL---------------FP-------KWMDYYIG--------KSEY 170
I G N +E++++ FP + +D +G K+
Sbjct: 80 IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGC 139
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
++ VNT L+ +Y KCG +D A FD +K+V +A+I GY
Sbjct: 140 ESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGY--------------- 184
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
G C ++ + V M+ + ++ W++
Sbjct: 185 ------IGVG-KCREAIDMFRRACSVFDGML--------------------EKDIVSWSS 217
Query: 291 MISGYAKNGYAEEAVKLFPK------------------------------WMDYYIGKSE 320
MI GYA NG +EA+ LF K W + ++E
Sbjct: 218 MIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNE 277
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ N ++ T LIDMYAKCG +D A F KD+V+ +A G + G + + LF
Sbjct: 278 FLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFG 337
Query: 381 HIRKHGIE------------------------------------PRHQHYARVVDLLARA 404
+ K GIE P +HY +VDLL RA
Sbjct: 338 QMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRA 397
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G+ + A + + +MP+E V ALL ++
Sbjct: 398 GFLDEAHQLVKSMPMEANAIVWGALLGGCRL 428
>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 876
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 123/529 (23%), Positives = 207/529 (39%), Gaps = 131/529 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRT-- 54
MQV P+ T V+ A ++ +G ++H + LGF LVC + ++
Sbjct: 194 MQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGM 253
Query: 55 -----IVFLDLY-------------HLWSRTEWSAFGSFDGL----LSNEENEYGTALDC 92
+VF ++ H+ + + AF +F+ + + + +
Sbjct: 254 LRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKS 313
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRY-------------QPNVTL 136
L+ L +++H +K GL ++L +L C+ +V
Sbjct: 314 CASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVS 373
Query: 137 RNAMISGYAKNGYAEEAVKLF---------PKWMDYY-----------------IGKSEY 170
AMISGY +NG ++AV LF P Y + K+ Y
Sbjct: 374 WTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNY 433
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA--FGS 225
+ V T L+D + K G++ A F+ KDV+ SAM+ GY G E +A F
Sbjct: 434 EKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQ 493
Query: 226 F--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-- 281
+G+ NE C+ +EQGK H + IK L L + L +S + V Y
Sbjct: 494 LTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIK--LRLNNALCVSSSLVTLYAK 551
Query: 282 ---------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 326
+ ++ WN+MISGYA++G A++A+++F + + RN +
Sbjct: 552 RGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEM--------QKRNLEV 603
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
I + + C GL G G+ + + I H
Sbjct: 604 DAITFIGVISACAHA-------------------------GLVGKGQNYFNIM--INDHH 636
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I P +HY+ ++DL +RAG A I MP +V R +L+A ++
Sbjct: 637 INPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRV 685
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 143/352 (40%), Gaps = 53/352 (15%)
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
L L V Y+P+ + +I+ A G +++ + K + +V L
Sbjct: 190 LFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHA-----LVVKLGFETERLVCNSL 244
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL----LSNEE 234
I M +K G + A + FD +KD V ++MI G+ ++ + AF +F+ +
Sbjct: 245 ISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTH 304
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRY---------- 281
+ + + L+ L +++H +K GL ++L +L C+
Sbjct: 305 ATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSL 364
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------- 315
+V W AMISGY +NG ++AV LF P Y
Sbjct: 365 MHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEI 424
Query: 316 ---IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ K+ Y + V T L+D + K G++ A F+ KDV+ SAM GY G
Sbjct: 425 HAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGET 484
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
EE +FH + + GI+P + +++ S K I+LRL+
Sbjct: 485 EEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLN 536
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 120/313 (38%), Gaps = 59/313 (18%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG----SFDGLLS 231
V L+DMY K G+V FD D+DVV ++++ GY W+ F L+
Sbjct: 139 VGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYS---WNRFNDQVWELFCLMQ 195
Query: 232 NE--ENEY---GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY----- 281
E +Y T + + + G +H ++KLG E E + SL ++
Sbjct: 196 VEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLR 255
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
+ WN+MI+G+ NG EA + F
Sbjct: 256 DARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCA 315
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRS 360
+ + KS N V T L+ KC +D A F + VV +
Sbjct: 316 SLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWT 375
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
AM GY +G ++ LF +R+ G++P H Y+ ++ + A + + ++ E
Sbjct: 376 AMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT-VQHAVFISEIHAEVIKTNYE 434
Query: 421 LRLSVRRALLSAW 433
SV ALL A+
Sbjct: 435 KSSSVGTALLDAF 447
>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 176/425 (41%), Gaps = 127/425 (29%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTL 136
C++ + Q K +HG + KLGL+L D+ + + V Y +V L
Sbjct: 71 CEVMEVFQVKKIHGLVRKLGLDL--DMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVL 128
Query: 137 RNAMISGYAKNGYAEEAVK----------LFPKW-----MDYYIGKSEYRNNVIVN---- 177
N+M++GYA+ G +EA+ L K+ + + G+ ++ N +V+
Sbjct: 129 WNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMI 188
Query: 178 -----------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
LIDMY KC V A F+ +KD+ W++ S
Sbjct: 189 KMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIF------------SWNSILSA 236
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ L S+ + GT L ++ M+ G++L+ L+++T + P +
Sbjct: 237 NELCSDHD---GT-------LRLFDR-------MLGDGVQLD---LVTITTIL---PACS 273
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
A++ G +GY V F K G+SE N+ L+DMYAKCGS+ A M
Sbjct: 274 HLAALVHGREIHGYM--IVNGFVK-----DGESENMYNLQTINALMDMYAKCGSMRDAGM 326
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------------ 382
F ++D + M +GYG+HG G E +F +
Sbjct: 327 VFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGF 386
Query: 383 ------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
KHG+ P QHY V+D+L RAG A+K + MPI+ V RALL
Sbjct: 387 ISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRALL 446
Query: 431 SAWKI 435
+A ++
Sbjct: 447 AACQL 451
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 65/233 (27%)
Query: 183 MYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTA 240
MYAKC ++ A + +RT D ++V +A+I G+ L+ DGL + EE
Sbjct: 1 MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQ----DGLGAYEEMRQAGV 56
Query: 241 LDCS----------CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------- 281
L C++ + Q K +HG + KLGL+L D+ + + V Y
Sbjct: 57 LPDKYTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDL--DMYVGSSLVSSYLKSELMKEA 114
Query: 282 --------QPNVTLWNAMISGYAKNGYAEEAVK----------LFPKW-----MDYYIGK 318
+V LWN+M++GYA+ G +EA+ L K+ + + G+
Sbjct: 115 RELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGR 174
Query: 319 SEYRNNVIVN---------------TVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
++ N +V+ LIDMY KC V A F+ +KD+
Sbjct: 175 GDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDI 227
>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
Length = 598
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 195/490 (39%), Gaps = 142/490 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-----------AVCRY---- 130
Y + + L + +G+ +H +++ GL+ ++L +L C
Sbjct: 43 YASLIKACNRLSAIREGRSIHCHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACALFDKI 102
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLF-------------PKWMD-------------Y 163
+ + N MISG+ KN V LF P ++ +
Sbjct: 103 PEKTIVTVNCMISGFVKNKRFHAGVGLFNRVLGGGFDLRVKPNYVTLVILISGCVEFGRF 162
Query: 164 YIGKS----------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
IG S + +N V LI +YA+ +D A F T +D+V + MI
Sbjct: 163 SIGNSLHSYCCKTSLDLKNEV--RNALIHLYAEFEYMDAAAKLFHETNVRDLVSWNTMIA 220
Query: 214 GYGLHE--WSAFGSFDGL-LSNEENEYGT--ALDCSC-DLEFLEQGKIVHGFMIKLGLEL 267
GY + +AF F + + N E + + +L +C + L GK VH F+ G+E+
Sbjct: 221 GYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMGKAVHAFIKVSGMEM 280
Query: 268 E---SDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAV------- 305
LI++ + C N+ WN+MI GY + G+ EA+
Sbjct: 281 MIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWNVIQ 340
Query: 306 --KLFPK---------------------WMDYYIGKSEY-RNNVIVNTVLIDMYAKCGSV 341
K+ P ++ YI S++ + ++ LIDMYAKCGS+
Sbjct: 341 SRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLCNALIDMYAKCGSM 400
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
D A F + +DV+ +++ VGY ++G GEE + F +
Sbjct: 401 DRAETVFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEPNSVTFLGVLSAC 460
Query: 383 -----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
+ + IEP+ +H +VD+ ARAG A+KF+ +MP+E V
Sbjct: 461 DHAGLVDKGKNLYDIMCKYYHIEPKIEHCGCMVDMHARAGMLEEAYKFVKDMPVEPNAVV 520
Query: 426 RRALLSAWKI 435
R L++A ++
Sbjct: 521 WRMLINACRV 530
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 159/355 (44%), Gaps = 52/355 (14%)
Query: 80 SNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESD--LLISLTAVCRYQPN--- 133
SN+ + +++ C + FL K F+ L E+E + LI+L + C + P+
Sbjct: 49 SNQTVSWTSSISHHCKNNNFL---KAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTS 105
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
+T A+ + K+G+A N+V+V T LIDMYAKCG +D A
Sbjct: 106 ITFGAALHTHAFKHGFA--------------------MNDVMVGTALIDMYAKCGKLDYA 145
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253
+ FD+ +++V + MI GY + G D L D +
Sbjct: 146 RLVFDQMGVRNLVSWNTMIDGYMKN-----GDVDDALK--------LFDKLPVKNVVSWT 192
Query: 254 KIVHGFMIKLGLE--LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
++ GF+ K E LE + L V P+ A+IS A G + W
Sbjct: 193 VVIGGFVKKECYEEALECFREMQLAGVV---PDFVTVIAIISACANLGALGLGL-----W 244
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ + K E+R+NV V LIDMYA+CG ++LA FD +++V +++ VG+ ++GL
Sbjct: 245 VHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGL 304
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
++ F ++K G+EP Y + + AG + K ++ + R S R
Sbjct: 305 ADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPR 359
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 150/351 (42%), Gaps = 93/351 (26%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDV-----VMRSAMIVGYGLHEWSAFGSFDGL-LS 231
T LI+M+++ +VD A FD+T + + + R+ + G G + + + +S
Sbjct: 108 TKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVS 167
Query: 232 NEENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISL------------ 275
++ Y L C + FL++GK +H +++ G ++ +L
Sbjct: 168 SDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSY 227
Query: 276 -TAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWM-------------------- 312
+AV P NV W+AMI+ YAKNG EA++LF + M
Sbjct: 228 ASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQAC 287
Query: 313 ------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
YI + + + V + LI MYA+CG ++ + FDR KDVV+ +
Sbjct: 288 AAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWN 347
Query: 361 AMTVGYGLHGLG-----------------------------------EEGWVLFHH-IRK 384
++ YGLHG G EEG LF +++
Sbjct: 348 SLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKE 407
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HGI+P +HYA +VDLL RA + A K I ++ IE V +LL A +I
Sbjct: 408 HGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRI 458
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 68/268 (25%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISL-------------TAVCRYQP--NVTLRN 138
C + FL++GK +H +++ G ++ +L +AV P NV +
Sbjct: 185 CLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWS 244
Query: 139 AMISGYAKNGYAEEAVKLFPKWM--------------------------------DYYIG 166
AMI+ YAKNG EA++LF + M YI
Sbjct: 245 AMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYIL 304
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
+ + + V + LI MYA+CG ++ + FDR KDVV+ +++I YGLH + A
Sbjct: 305 RRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIK 364
Query: 225 SFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F+ ++ S + + L +E+GK + M+K E +
Sbjct: 365 IFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVK-----EHGI--------- 410
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLF 308
QP+V + M+ + +EA K+
Sbjct: 411 -QPSVEHYACMVDLLGRANRLDEAAKII 437
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 144/350 (41%), Gaps = 87/350 (24%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-----WSAFGS-F 226
N+ V ++DMY KCG++ A FD +D V +A+I + +E S F S
Sbjct: 374 NICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC---- 279
+ ++ YG+ + + L G +HG ++K G+ L+ L+ + C
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLM 493
Query: 280 -------RYQPNVTL-WNAMISGYAKNGYAEEAVKLFPKWMDY----------------- 314
R + T+ WN++ISG++ +E A + F + ++
Sbjct: 494 EAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCA 553
Query: 315 -------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
I K ++V + + L+DMY+KCG++ + + F++T +D V SA
Sbjct: 554 NMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSA 613
Query: 362 MTVGYGLHGLGEEGWVLFHHIR------------------------------------KH 385
M Y HG GE+ LF ++ +
Sbjct: 614 MICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHY 673
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G++P +HY+ +VDLL R+ N A K I +M E + R LLS K+
Sbjct: 674 GLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKM 723
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 134/345 (38%), Gaps = 79/345 (22%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAE 151
CS +L+ L GK H MI V + P + + N ++ Y K+
Sbjct: 16 CS-NLKALNPGKQAHAQMI----------------VTSFVPTIYVANCLVQFYCKSSNMN 58
Query: 152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
A K+F + +R+ + NT++ YA+ G++ A FD ++DVV +++
Sbjct: 59 YAFKVFDRM--------PHRDVISWNTMIFG-YAEIGNMGFAQSLFDTMPERDVVSWNSL 109
Query: 212 IVGYGLHEWSAFGSFDGL-------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 264
+ Y LH S + + ++ + L +E G VH I++G
Sbjct: 110 LSCY-LHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMG 168
Query: 265 LE---LESDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP 309
E + L+ + + C+ + N+ W+A+I+GY +N E +KLF
Sbjct: 169 FENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFK 228
Query: 310 KWMDYYIG------------------------------KSEYRNNVIVNTVLIDMYAKCG 339
+ +G KS++ + I+ T +DMYAKC
Sbjct: 229 DMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCD 288
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ A F+ + +A+ VGY G + +F +++
Sbjct: 289 RMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQR 333
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 108/284 (38%), Gaps = 51/284 (17%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
+ N+V+ + L+DMY+KC +D A F ++++V SA+I GY ++ F
Sbjct: 169 FENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFK 228
Query: 228 GLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR 280
+L ++ Y + L + G +HG +K +S + + + A C
Sbjct: 229 DMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCD 288
Query: 281 Y------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------ 322
P +NA+I GYA+ +A+++F Y+ E
Sbjct: 289 RMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALT 348
Query: 323 ------------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
N+ V ++DMY KCG++ A FD +D V
Sbjct: 349 ACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVS 408
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+A+ + + + LF + + +EP Y VV A
Sbjct: 409 WNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 107/281 (38%), Gaps = 85/281 (30%)
Query: 17 LKACVALPSLLMGPRVHGQIFS--LGFLVCY---LFD------GLFDRTIVFLDLYHLWS 65
L AC + L G ++HG LGF +C + D L + +F D+
Sbjct: 347 LTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERR-D 405
Query: 66 RTEWSAFGSFDGLLSNEENE-----------------------YGTALDCSCDLEFLEQG 102
W+A + ++E+NE YG+ + + L G
Sbjct: 406 AVSWNAI-----IAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460
Query: 103 KIVHGFMIKLGLELE---SDLLISLTAVC-----------RYQPNVTLR-NAMISGYAKN 147
+HG ++K G+ L+ L+ + C R + T+ N++ISG++
Sbjct: 461 MEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQ 520
Query: 148 GYAEEAVKLFPKWMDY------------------------------YIGKSEYRNNVIVN 177
+E A + F + ++ I K ++V +
Sbjct: 521 KQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIA 580
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ L+DMY+KCG++ + + F++T +D V SAMI Y H
Sbjct: 581 STLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYH 621
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 29/230 (12%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGLL 230
+ V L+ Y K +++ A FDR +DV+ + MI GY F FD +
Sbjct: 40 TIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMP 99
Query: 231 SNEENEYGTALDCSCDLEFLEQG---KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
+ + + L C +L G K + F+ L++ D + + V +
Sbjct: 100 ERDVVSWNSLLSC-----YLHNGVNRKSIEIFVRMRSLKIPHDY-ATFSVVLK------- 146
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
A +G + + L + +G + N+V+ + L+DMY+KC +D A
Sbjct: 147 --------ACSGIEDYGLGLQVHCLAIQMG---FENDVVTGSALVDMYSKCKKLDGAFRI 195
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397
F ++++V SA+ GY + EG LF + K G+ YA V
Sbjct: 196 FREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 49/198 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDLYH 62
P+ T V+KAC +L G +HG+I G F+ L D ++ + + ++
Sbjct: 439 PDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVD-MYGKCGMLMEAEK 497
Query: 63 LWSRTEWSAFGSFDGLLS------NEEN------------------EYGTALDCSCDLEF 98
+ R E S++ ++S EN Y T LD ++
Sbjct: 498 IHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMAT 557
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN-----------------AMI 141
+E GK +H ++KL L SD+ I+ T V Y +++ AMI
Sbjct: 558 IELGKQIHAQILKLNLH--SDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMI 615
Query: 142 SGYAKNGYAEEAVKLFPK 159
YA +G+ E+A+KLF +
Sbjct: 616 CAYAYHGHGEQAIKLFEE 633
>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 871
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 163/417 (39%), Gaps = 125/417 (29%)
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
+MI Y +N AEE + LF KW+ Y+ K
Sbjct: 204 TSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIK 263
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL------DKDVVMRSAMIVGYGLHEW- 220
+ N + T L++MY KCG + A FD D+V +AMIVGY +
Sbjct: 264 NGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYP 323
Query: 221 -SAFGSFDG-----LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES--DLL 272
+A F +L N + L LE + GK++H ++K GL+ S + L
Sbjct: 324 QAALELFTDKKWYRILPNSVT-LASLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNSL 382
Query: 273 ISLTAVCRYQPN------------VTLWNAMISGYAKNGYAEEAVKLFPKWM-------- 312
+ + A C P+ V WN++ISGYA++G A EA+ LF +
Sbjct: 383 VDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDA 442
Query: 313 --------------DYYIGKSEY---------RNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ IG S + +++ V T L++ YAKCG A M FD
Sbjct: 443 VTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFD 502
Query: 350 RTLDKDVVMRSAMTVGYGLHGLG-----------------------------------EE 374
+K+ V +AM G G+ G G EE
Sbjct: 503 GMGEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEE 562
Query: 375 GWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
G ++F + K P +HYA +VDLLARAG A FI MP++ + V A L
Sbjct: 563 GLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFL 619
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 118/292 (40%), Gaps = 68/292 (23%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF------DGL 229
V T L+D Y+KCG + A FD D+ VV ++MIV Y +E + G +G
Sbjct: 171 VLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGF 230
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL-------------- 275
L G+ + L L QGK VHG++IK G+E+ S L SL
Sbjct: 231 LDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDAR 290
Query: 276 -------TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--KW--------------- 311
+ C ++ W AMI GY + GY + A++LF KW
Sbjct: 291 SVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLS 350
Query: 312 ------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+ Y + + RN+ L+DMYAKCG + A F T+D
Sbjct: 351 ACAQLENIVMGKLLHVLVVKYGLDDTSLRNS------LVDMYAKCGLIPDAHYVFATTVD 404
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
KDVV +++ GY G E LF+ +R P V+ A G
Sbjct: 405 KDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVG 456
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 51/312 (16%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
+ PN T +L AC L +++MG +H + G D T + L +++
Sbjct: 338 ILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYG----------LDDTSLRNSLVDMYA 387
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
+ GL+ + + T + D + + ++ G+ + G E+ L +
Sbjct: 388 KC---------GLIPDAHYVFATTV----DKDVVSWNSVISGYA-QSGSAYEALDLFNRM 433
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
+ + P+ ++S A G + + L + Y + S ++ V T L++ YA
Sbjct: 434 RMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSS----SIYVGTALLNFYA 489
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS---FDGLLSNE----ENEYG 238
KCG A M FD +K+ V +AMI G G+ + GS F +L E E +
Sbjct: 490 KCGDATSARMVFDGMGEKNAVTWAAMIGGCGM-QGDGVGSLALFRDMLKEELVPNEVVFT 548
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKN 298
T L +E+G ++ FM K EL + P++ + M+ A+
Sbjct: 549 TLLAACSHSGMVEEGLMIFDFMCK---ELN------------FVPSMKHYACMVDLLARA 593
Query: 299 GYAEEAVKLFPK 310
G +EA+ K
Sbjct: 594 GNLQEALDFIDK 605
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 159/375 (42%), Gaps = 96/375 (25%)
Query: 152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
++++ + +Y + + + N VL+ M+ KCG + A FD ++ V +
Sbjct: 146 KSIRGVKRLCNYMVDNGFEPDQYMRNRVLL-MHVKCGMMIDACRLFDEMPARNAVSWGTI 204
Query: 212 IVGY--GLHEWSAFGSFDGLLSNEE------NEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
I GY + AF F +L EE + T + S LE + G+ +H IK
Sbjct: 205 ISGYVDSGNYVEAFRLF--ILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKA 262
Query: 264 GLELESDLLISLTAVCRYQ---------------PNVTL--WNAMISGYAKNGYAEEAVK 306
GL D+ +S + Y P+ T+ WN++I+GYA +GY+EEA+
Sbjct: 263 GLG--QDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALD 320
Query: 307 LFPKW------MDYY--------------------IGKSEYRN----NVIVNTVLIDMYA 336
L+ + MD++ + S RN +V+ NT L+D Y+
Sbjct: 321 LYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYS 380
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE---------------------- 374
K G VD A FDR ++++ +A+ GYG HG GEE
Sbjct: 381 KWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLA 440
Query: 375 -------------GWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
GW +F + R H ++PR H+A +++LL R G + A+ I P +
Sbjct: 441 VLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQ 500
Query: 421 LRLSVRRALLSAWKI 435
++ ALL A ++
Sbjct: 501 PTANMWAALLRACRV 515
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 139/356 (39%), Gaps = 94/356 (26%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ-------------- 131
+ T + S LE + G+ +H IK GL D+ +S + Y
Sbjct: 236 FATMIRASAGLEIIFPGRQLHSCAIKAGLG--QDIFVSCALIDMYSKCGSLEDAHCVFDE 293
Query: 132 -PNVTLR--NAMISGYAKNGYAEEAVKLFPKW------MDYY------------------ 164
P+ T+ N++I+GYA +GY+EEA+ L+ + MD++
Sbjct: 294 MPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARA 353
Query: 165 --IGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ S RN +V+ NT L+D Y+K G VD A FDR ++++ +A+I GYG H
Sbjct: 354 KQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNH 413
Query: 219 EW--SAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK--------- 262
A F +G++ N CS F E+G + M +
Sbjct: 414 GHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLF-ERGWEIFQSMTRDHKVKPRAM 472
Query: 263 --------LGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE----EAVKLF-- 308
LG E D +L +QP +W A++ +G E A KL+
Sbjct: 473 HFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGM 532
Query: 309 -PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
P+ + YI VL+++Y G + A F K + M A +
Sbjct: 533 EPEKLSNYI-------------VLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACS 575
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 142/590 (24%), Positives = 224/590 (37%), Gaps = 163/590 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTI 55
V+P+ T P V+KAC L MG V+ QI +GF + Y GL R
Sbjct: 102 VSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRAR 161
Query: 56 VFLDLYHLWSRTEW-------SAFGSFDGLLS-----------NEENEYGTALDCSCDLE 97
D + W S+ G ++ L + + L +L
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLL 221
Query: 98 FLEQGKIVHGFMIKLGLELESDL---LISL-------TAVCRYQPNVTLR-----NAMIS 142
++QG+ +HGF +K G+ S + L+++ T R + +R N MI
Sbjct: 222 VVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMIC 281
Query: 143 GYAKNGYAEEAVKLF-----------------------------PKWMDYYIGKSEYRNN 173
GY K EE+VK+F K++ Y+ ++ +
Sbjct: 282 GYLKLEMVEESVKMFLENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLE 341
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----GLHEWSAFGSFDGL 229
V +LID+YAKCG + A F+ KD V +++I GY L E A F +
Sbjct: 342 STVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLME--AMKLFKMM 399
Query: 230 LSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY- 281
+ EE Y + S L L+ GK +H IK G+ ++ S+ LI + A C
Sbjct: 400 MIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEV 459
Query: 282 -----------QPNVTLWNAMISGYAKNG------------------------------Y 300
+ WN +IS + G
Sbjct: 460 GDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMC 519
Query: 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
A A K K + + + Y + + + LI+MY+KCG ++ + F+R +DVV +
Sbjct: 520 ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWT 579
Query: 361 AMTVGYGLHGLGEE-----------------------------------GWVLFHHIRKH 385
M YG++G GE+ G F ++ H
Sbjct: 580 GMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTH 639
Query: 386 -GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I+P +HYA VVDLL+R+ + A +FI MPIE S+ ++L A +
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACR 689
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 54/223 (24%)
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLI-----------SLTAVCRYQP-- 283
AL S +L L + +H +I LGL+ S LI SL+ R P
Sbjct: 13 ALSSSSNLNELRR---IHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAK 69
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY---------------------- 321
NV +WN++I ++KNG+ +A++ + K + + +Y
Sbjct: 70 NVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129
Query: 322 --------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
+++ V L+DMY++ G + A FD +D+V +++ GY HG E
Sbjct: 130 KQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 374 EGWVLFHHIRKHGIEPRHQHYARVVD-----LLARAGYSNHAF 411
E ++H +R I P + V+ L+ + G H F
Sbjct: 190 EALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGF 232
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 170/406 (41%), Gaps = 82/406 (20%)
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---D 119
LWS W E + L L+ +E G++VH ++KLG E S
Sbjct: 9 LWSHGMWP-----------NEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVG 57
Query: 120 LLISLTAV------CR--YQPNVTLRN----AMISGYAKNGYAEEAVKLFPKWMDYYIGK 167
LI + A CR + V+L ++I+GY K G EEA+++F + + K
Sbjct: 58 ALIDMYAKNNRMSDCRRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQ-----MKK 112
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGS 225
+ + +I+ Y G +D A F + + +VV + MI G+ HE +
Sbjct: 113 VGREPDQVAFVTVINAYVALGRLDDALGLFFQMPNPNVVAWNVMISGHAQRGHETKSIEL 172
Query: 226 FDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
F + + + + G+ L L L+ G +VH IK GL+ LI++ A
Sbjct: 173 FCNMRKAGIKSTRSTLGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAK 232
Query: 279 CR--------YQP----NVTLWNAMISGYAKNGYAEEAVKLFP----------------- 309
C+ + P NV LWNAM+ GYA+NGYA E ++L
Sbjct: 233 CKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSI 292
Query: 310 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+ + I K+++ +N+ V LIDMYAK G ++ A F+ +D
Sbjct: 293 LSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDN 352
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
V +A+ VGY E +++F + GI P A ++ A
Sbjct: 353 VSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACA 398
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 121/486 (24%), Positives = 200/486 (41%), Gaps = 98/486 (20%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T +VL C L S+ G VH + LGF G +D+Y +R
Sbjct: 16 PNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVG------ALIDMYAKNNRM 69
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
FDG +S + + + + E+ V M K+G E D + +T +
Sbjct: 70 S-DCRRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVG--REPDQVAFVTVI 126
Query: 128 CRY-----------------QPNVTLRNAMISGYAKNGYAEEAVKLF------------- 157
Y PNV N MISG+A+ G+ ++++LF
Sbjct: 127 NAYVALGRLDDALGLFFQMPNPNVVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTRS 186
Query: 158 ---------PKWMDYYIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
D G K +NV V + LI+MYAKC ++ A FD
Sbjct: 187 TLGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPI 246
Query: 201 LDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN--------EENEYGTALD-CSCDLEFLE 251
+++VV+ +AM+ GY + ++ LLSN +E Y + L C+C LE +E
Sbjct: 247 DERNVVLWNAMVGGYAQNGYAH--EVIELLSNMKSCGFHPDEFTYTSILSACAC-LEHVE 303
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
G+ +H +IK ++ N+ + NA+I YAK+G+ E+A K F
Sbjct: 304 GGRQLHSIIIK----------------NKFASNLFVGNALIDMYAKSGFLEDARKQFE-- 345
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR----TLDKDVVMRSAMTVGYG 367
+ KS R+NV N +++ + V+ MF L +V + S ++
Sbjct: 346 ----LMKS--RDNVSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACAN 399
Query: 368 LHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
+ G E+G + K G+E + ++D+ A+ G A K + +MP +S+
Sbjct: 400 VEGF-EQGKPIHCLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSI-N 457
Query: 428 ALLSAW 433
AL++ +
Sbjct: 458 ALIAGY 463
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/473 (24%), Positives = 182/473 (38%), Gaps = 110/473 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------ 129
+ + + G+ L L L+ G +VH IK GL+ LI++ A C+
Sbjct: 181 IKSTRSTLGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAK 240
Query: 130 --YQP----NVTLRNAMISGYAKNGYAEEAVKLFP------------------------- 158
+ P NV L NAM+ GYA+NGYA E ++L
Sbjct: 241 KVFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACLE 300
Query: 159 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+ + I K+++ +N+ V LIDMYAK G ++ A F+ +D V +A+IV
Sbjct: 301 HVEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDNVSWNAIIV 360
Query: 214 GYGLHE--WSAFGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266
GY E AF F G+L +E + + L ++E EQGK +H +K GLE
Sbjct: 361 GYVQEEDEVEAFLMFQKMHLVGILPDEVS-LASILSACANVEGFEQGKPIHCLSVKSGLE 419
Query: 267 LE---SDLLISLTAVC----------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKW 311
LI + A C + P +V NA+I+GYA EEA+ LF K
Sbjct: 420 TSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIAGYAPVNL-EEAIILFEKM 478
Query: 312 MDYYIGKSEYR-------------------------------NNVIVNTVLIDMYAKC-G 339
+ SE ++ + L+ MY K
Sbjct: 479 QAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLGVSLLGMYVKSLR 538
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA---R 396
D +F + + K ++ +AM G + +E + +R P + R
Sbjct: 539 KTDARILFSEFSNPKSTILWTAMISGLAQNNCSDEALQFYQEMRSCNALPDQATFVSVLR 598
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW------KIPMQQWENM 443
+L+ G I ++L S AL+ + + MQ +E+M
Sbjct: 599 ACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDM 651
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 125/292 (42%), Gaps = 53/292 (18%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEWSAFGS 225
KS ++ + LIDMYAKCG V A + VV +A+I GY ++ A
Sbjct: 415 KSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIAGYAPVNLEEAIIL 474
Query: 226 FDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL-ISLTAV-- 278
F+ + L+ E + + LD E L G +H ++K GL+ + D L +SL +
Sbjct: 475 FEKMQAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLGVSLLGMYV 534
Query: 279 -------CRY------QPNVT-LWNAMISGYAKNGYAEEAVKLF---------PKWMDYY 315
R P T LW AMISG A+N ++EA++ + P +
Sbjct: 535 KSLRKTDARILFSEFSNPKSTILWTAMISGLAQNNCSDEALQFYQEMRSCNALPDQATFV 594
Query: 316 -----------IGKSEYRNNVIVNT----------VLIDMYAKCGSVDLAPMFFDRTLDK 354
IG +++I T LIDMYAKCG V + F+ K
Sbjct: 595 SVLRACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSK 654
Query: 355 -DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
DV+ ++M VG+ +G E +F+ +++ + P + V+ + AG
Sbjct: 655 NDVISWNSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACSHAG 706
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 120/304 (39%), Gaps = 70/304 (23%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC---------- 128
+E + L ++E EQGK +H +K GLE LI + A C
Sbjct: 386 DEVSLASILSACANVEGFEQGKPIHCLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKIL 445
Query: 129 RYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------- 171
+ P +V NA+I+GYA EEA+ LF K + SE
Sbjct: 446 KSMPEHSVVSINALIAGYAPVNL-EEAIILFEKMQAEGLNPSEITFASLLDGCGGPEQLI 504
Query: 172 ----------------NNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLDKDVVMRSAMIVG 214
++ + L+ MY K D +F + + K ++ +AMI G
Sbjct: 505 LGIQIHCLILKRGLQYDDDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISG 564
Query: 215 YGLHEWS--AFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
+ S A + + S ++ + + L L + G+ +H + + GL+L+
Sbjct: 565 LAQNNCSDEALQFYQEMRSCNALPDQATFVSVLRACAVLSSIGDGREIHSLIFRTGLDLD 624
Query: 269 SDL---LISLTAVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
LI + A C + +V WN+MI G+AKNGYAE A+++F +
Sbjct: 625 ESTCSALIDMYAKCGDVRSSMQVFEDMHSKNDVISWNSMIVGFAKNGYAENALRIFNEMK 684
Query: 313 DYYI 316
++
Sbjct: 685 QAHV 688
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 52/214 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG------FLVCYLFDGLF--- 51
MQ + P+ T +L C L++G ++H I G FL L G++
Sbjct: 478 MQAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLGVSLL-GMYVKS 536
Query: 52 ----DRTIVFLDLYHLWSRTEWSAFGSFDGLLSN--------------------EENEYG 87
D I+F + + S W+A S GL N ++ +
Sbjct: 537 LRKTDARILFSEFSNPKSTILWTAMIS--GLAQNNCSDEALQFYQEMRSCNALPDQATFV 594
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-------------RYQ 131
+ L L + G+ +H + + GL+L+ LI + A C +
Sbjct: 595 SVLRACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSK 654
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
+V N+MI G+AKNGYAE A+++F + ++
Sbjct: 655 NDVISWNSMIVGFAKNGYAENALRIFNEMKQAHV 688
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 167/421 (39%), Gaps = 118/421 (28%)
Query: 102 GKIVHGFMIKLGLELESDLLISL-----------TAVCRYQ----PNVTLRNAMISGYAK 146
GK VH ++ GL L SL TA +Q P+V N M+SGY K
Sbjct: 136 GKQVHAHVLVNGLHSRVYLRNSLIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVK 195
Query: 147 NGYAEEAVKLFPKWMDYYIGKSEYR--------------------------------NNV 174
G A++LF IG +Y +
Sbjct: 196 GGCVVNALQLFRDMASREIGVDQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGL 255
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
I++ L+DMYAKCG ++ A F +KD + + MI G+ + DG+L
Sbjct: 256 ILSNALLDMYAKCGEMNTAMRVFGEAKEKDDISWNTMIAGF---------ANDGMLDLAS 306
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGF----MIKLGLELESDLLISLTAVCRYQPN----VT 286
+ D C + + ++ G+ +EL +D+L S R +P+ VT
Sbjct: 307 KFF---FDAPCR-DLISWNTLLAGYGRCREFAAVMELFNDMLSS-----RVRPDKVTAVT 357
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
L +A +S A N K + ++ K + + + L+DMY KCG+V LA
Sbjct: 358 LISAAVSKGALN---------LGKSVHGWVLKEHGTQDAFLASTLVDMYCKCGNVKLAYA 408
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-------------------- 386
F++ LDKDV + +AM G HG G E LF +++ G
Sbjct: 409 VFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVAPNGVTLVTVLSACSHAGL 468
Query: 387 ----------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
IEPR +H+ +VDLLAR+G + A MP++ S+ ++L
Sbjct: 469 LDEGCEIFYTMQKRFNIEPRVEHFGCMVDLLARSGRLSDAVGLARMMPMKPSRSIWGSIL 528
Query: 431 S 431
S
Sbjct: 529 S 529
>gi|255549567|ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544990|gb|EEF46504.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 655
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 130/523 (24%), Positives = 199/523 (38%), Gaps = 139/523 (26%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLD-LYHLWS 65
+P+ T P V KAC LPS L G +H + S GF D + + + ++
Sbjct: 136 SPDHYTFPFVFKACGELPSFLHGSCIHAIVCSTGF----------DSNVFVCNAVVAMYG 185
Query: 66 RTEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGF-----MIKLGLELES 118
R S++ FD LL E + S +L+ G + G M K+G E
Sbjct: 186 RCGASSYARQMFDELLMGEV--FDLVSWNSMIAVYLQSGDLKSGIELFRRMWKVG---EF 240
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
D++ ++ P + G +G+A LF +V V
Sbjct: 241 DIVPDAVSLVNVLPACASMGDWLCGKQVHGFAIR-YGLF--------------EDVFVAN 285
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----------GLHE--------- 219
L+DMYAKCG + +A FDR KDVV +AM+ GY GL E
Sbjct: 286 SLVDMYAKCGLMCIANKVFDRMQHKDVVSWNAMVTGYSQIGKFEDALGLFEKMREEKIQL 345
Query: 220 ----WSA-----------------FGSFD--GLLSNEENEYGTALDCSCDLEFLEQGKIV 256
WSA F GL NE C+ + L GK
Sbjct: 346 DVVSWSAVIAGYAQRGLGYEALNVFRQMQVCGLRPNEVTLVSLLSGCA-SVGALLHGKET 404
Query: 257 HGFMIKLGLELE----SDLLISLTAV------CR--------------YQPNVTLWNAMI 292
H + IK L + D L+ + A+ C+ NV W AMI
Sbjct: 405 HCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKCKDINVGRAIFNSIPPKDRNVVTWTAMI 464
Query: 293 SGYAKNGYAEEAVKLFPKWMDYY---------------------------------IGKS 319
GYA++G A +A++LF + + Y + +
Sbjct: 465 GGYAQHGEANDALELFSQMLKQYNRSVKPNAFTISCALMACARLAALRFGRQIHAFVLRD 524
Query: 320 EYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVL 378
+Y +V+ V LIDMY+K G +D A + FD ++ V +++ GYG+HG GEE +
Sbjct: 525 QYDCDVLYVANCLIDMYSKSGDMDAARLVFDNMKHRNTVSWTSLMTGYGMHGHGEEAIKV 584
Query: 379 FHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
F +R+ G+ + V+ + +G + K+ +M E
Sbjct: 585 FDEMRREGLVSDGITFLVVLYACSHSGMVDEGIKYFHDMCKEF 627
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 148/353 (41%), Gaps = 59/353 (16%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-FLVCYLFDGLFD----------RT 54
+ P+ + VL AC ++ L G +VHG G F ++ + L D
Sbjct: 242 IVPDAVSLVNVLPACASMGDWLCGKQVHGFAIRYGLFEDVFVANSLVDMYAKCGLMCIAN 301
Query: 55 IVFLDLYH----LWSR--TEWSAFGSFD---GLLSNEENEYGTALDCSCDLEFLEQGKIV 105
VF + H W+ T +S G F+ GL E L+ + ++
Sbjct: 302 KVFDRMQHKDVVSWNAMVTGYSQIGKFEDALGLFEKMREE-------KIQLDVVSWSAVI 354
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG---YAEEAVKLFPKWMD 162
G+ + GL E+ + VC +PN +++SG A G + +E K +
Sbjct: 355 AGYAQR-GLGYEALNVFRQMQVCGLRPNEVTLVSLLSGCASVGALLHGKETHCYSIKCVL 413
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT--LDKDVVMRSAMIVGYGLHEW 220
+ +S+ R+ ++V +IDMY KC +++ F+ D++VV +AMI GY H
Sbjct: 414 NF-DRSDPRDELLVVNAIIDMYTKCKDINVGRAIFNSIPPKDRNVVTWTAMIGGYAQHGE 472
Query: 221 S--AFGSFDGLL-----SNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELE--- 268
+ A F +L S + N + AL L L G+ +H F+++ + +
Sbjct: 473 ANDALELFSQMLKQYNRSVKPNAFTISCALMACARLAALRFGRQIHAFVLRDQYDCDVLY 532
Query: 269 -SDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
++ LI + + N W ++++GY +G+ EEA+K+F
Sbjct: 533 VANCLIDMYSKSGDMDAARLVFDNMKHRNTVSWTSLMTGYGMHGHGEEAIKVF 585
>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 938
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 132/488 (27%), Positives = 197/488 (40%), Gaps = 131/488 (26%)
Query: 42 LVCYLFDGLFDRTIVFLDLYH--LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 99
L CY+ DG R + L ++ LW + E + + +AL D EF
Sbjct: 334 LACYVQDG---RCLCALKVFAEMLWMKKEINYV------------TFTSALAACLDPEFF 378
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCR--------YQPNVTLR----NAMISGY 144
GKI+HGF++ LGL+ E + LI+ C +Q L NA+I G+
Sbjct: 379 TNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGF 438
Query: 145 AKNGYAEEAVKLFP-------KWMDYY-----IGKSEYRNNVI----------------- 175
A N EAV F +DY +G ++I
Sbjct: 439 ANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDL 498
Query: 176 ---VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YGLHE---------W 220
V + LI MYAKCG + + FD+ + K + +A+I YG E
Sbjct: 499 DQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMR 558
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
SA FD + + TAL + DL LE+G+ +HG IKLG EL+ ++
Sbjct: 559 SAGIEFD------QFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFII-------- 604
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
NA + Y K G ++A+++ P+ D R+ + NT LI + A+ G
Sbjct: 605 --------NAAMDMYGKCGELDDALRILPQPTD--------RSRLSWNT-LISISARHGQ 647
Query: 341 VDLAPMFFDRTLD--------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRH 391
A F L V + SA + G GL +EG + + +GI+P
Sbjct: 648 FHKAKETFHDMLKLGVKPNHVSFVCLLSACSHG----GLVDEGLAYYASMTSVYGIQPGI 703
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGID 451
+H ++DLL R+G A FI MPI V R+LL++ +I R +D
Sbjct: 704 EHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRI-----------YRNLD 752
Query: 452 EGEKTDKR 459
G K K
Sbjct: 753 LGRKAAKH 760
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 115/285 (40%), Gaps = 53/285 (18%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDG 228
+N+ + L+ +Y+ G A + F R ++D++ ++M+ Y A F
Sbjct: 293 ESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAE 352
Query: 229 LL--SNEEN--EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY 281
+L E N + +AL D EF GKI+HGF++ LGL+ E + LI+ C
Sbjct: 353 MLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHK 412
Query: 282 QPNV------------TLWNAMISGYAKNGYAEEAVKLF-------PKWMDY-----YIG 317
WNA+I G+A N EAV F +DY +G
Sbjct: 413 MAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILG 472
Query: 318 KSEYRNNVI--------------------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
++I V + LI MYAKCG + + FD+ + K
Sbjct: 473 SCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSS 532
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ +A+ +G GEE L +R GIE +++ + + A
Sbjct: 533 VWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAA 577
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 139/384 (36%), Gaps = 102/384 (26%)
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTLRNAMIS 142
++G HGF IK GL D+ + + V Y NV +++
Sbjct: 76 KEGFQFHGFAIKCGLIY--DVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMV 133
Query: 143 GYAKNGYAEEAVKLFPKW----------------------MDYYIG--------KSEYRN 172
Y+ NG +E + + + MD +G K
Sbjct: 134 SYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLET 193
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---LHEWSAFGSFDGL 229
V LI M+ CG ++ A F+ ++D + +++I LHE S F F +
Sbjct: 194 KVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEES-FRYFHWM 252
Query: 230 -LSNEENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV------- 278
L +EE Y T L +++L+ GK VHG +K GLE L +L +V
Sbjct: 253 RLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRS 312
Query: 279 ------CRYQPNVTL--WNAMISGYAKNGYAEEAVKLFPK--WMDYYIGKSEY------- 321
R P L WN+M++ Y ++G A+K+F + WM I +
Sbjct: 313 KDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAAC 372
Query: 322 ---------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
++ +I+ LI Y KC + A F R D V +
Sbjct: 373 LDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWN 432
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRK 384
A+ G+ + E F +R+
Sbjct: 433 ALIGGFANNAELNEAVAAFKLMRE 456
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 56/255 (21%)
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA--FGSFDGLLSNEENEY 237
MY+K G ++ A + FDR +++ + M+ GY G + + F G+
Sbjct: 1 MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60
Query: 238 GTALDCSCDLEFL--EQGKIVHGFMIKLGLELESDLLISLTAVCRYQP------------ 283
+L +C+ + ++G HGF IK GL D+ + + V Y
Sbjct: 61 IASLVTACNKSSIMAKEGFQFHGFAIKCGLIY--DVFVGTSFVHFYASYGIVSNAQKMFN 118
Query: 284 -----NVTLWNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYI 316
NV W +++ Y+ NG +E + + + MD +
Sbjct: 119 EMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIIL 178
Query: 317 G--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
G K V LI M+ CG ++ A F+ ++D + +++
Sbjct: 179 GHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQ 238
Query: 369 HGLGEEGWVLFHHIR 383
+ L EE + FH +R
Sbjct: 239 NTLHEESFRYFHWMR 253
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 143/358 (39%), Gaps = 89/358 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
K+ Y V + T LI +Y KC + A D +++VV +AMI GY ++ A
Sbjct: 38 KTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALH 97
Query: 225 SFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-------DLLI 273
F +L + E + T L + G+ +H +IK E D+
Sbjct: 98 LFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYA 157
Query: 274 SLTAVCRY--------QPNVTLWNAMISGYAKNGYAEEAVKLFPK---------WMDY-- 314
+C + +V A+ISGYA+ G EEA+ LF + ++ Y
Sbjct: 158 KAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYAS 217
Query: 315 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
++ +++ V++ LIDMY+KCGS+ + FD ++
Sbjct: 218 VLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERT 277
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------------------- 383
V+ +AM VGY HGLG E LF ++
Sbjct: 278 VISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIF 337
Query: 384 ------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K G EP +HY VVDL RAG AF+FI MP E ++ +LL A ++
Sbjct: 338 YEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 395
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 45/206 (21%)
Query: 250 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLWNAMISG 294
+ +G+ VH MIK E L LI L CR + NV W AMISG
Sbjct: 26 IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 85
Query: 295 YAKNGYAEEAVKLFPKWM----------------------DYYIG--------KSEYRNN 324
Y++ GYA EA+ LF + + + +G K+ + ++
Sbjct: 86 YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH 145
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ V + L+DMYAK G + A FD ++DVV +A+ GY GL EE LF +++
Sbjct: 146 IFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR 205
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHA 410
G+ + YA V+ L+ +H
Sbjct: 206 EGMRSNYVTYASVLTALSGLAALDHG 231
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 63/210 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------L 42
M ++ APN T VL +C + +G ++H + F
Sbjct: 102 MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 161
Query: 43 VC---YLFDGLFDRTIV-----------------FLDLYHLWSRTEWSAFGSFDGLLSNE 82
+C +FDGL +R +V LDL+ R +G+ SN
Sbjct: 162 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR---------EGMRSNY 212
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLI------SLTAVCRYQP 132
Y + L L L+ G+ VH +++ L L++ L+ SLT R
Sbjct: 213 VT-YASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFD 271
Query: 133 NVTLR-----NAMISGYAKNGYAEEAVKLF 157
++ R NAM+ GY+K+G EAV+LF
Sbjct: 272 SMPERTVISWNAMLVGYSKHGLGREAVELF 301
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 52/298 (17%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEWSAFGSF---DGLLSN- 232
T L+++ GS+ F + D + +++I H +S + + +LSN
Sbjct: 48 TKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNV 107
Query: 233 -EENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPN--- 284
N T++ SC DL L G+I+HG ++ G + L+S C N
Sbjct: 108 APSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARK 167
Query: 285 ---------VTLWNAMISGYAKNGYAEEAVKLFPK------------------------- 310
V WN+MISGY +NG+A+EA++LF +
Sbjct: 168 VFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGA 227
Query: 311 -----WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
W+ Y + NV++ T LI+MY +CG+V A FD +++VV +AM G
Sbjct: 228 FILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISG 287
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
YG +G G + LFH +R++G+ P + V+ A AG N + +M E RL
Sbjct: 288 YGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRL 345
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 102/415 (24%), Positives = 159/415 (38%), Gaps = 115/415 (27%)
Query: 45 YLFDGLFDRTIVF--LDLYHLWSRTEWSAFGSFDGLLSN--EENEYGTALDCSC-DLEFL 99
+LF L T F +Y L+ T +LSN N T++ SC DL L
Sbjct: 76 FLFTSLIRSTSKFHNFSVYSLYFYTRM--------VLSNVAPSNYTFTSVIKSCADLVAL 127
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPN------------VTLRNAMISGY 144
G+I+HG ++ G + L+S C N V N+MISGY
Sbjct: 128 RHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGY 187
Query: 145 AKNGYAEEAVKLFPK------------------------------WMDYYIGKSEYRNNV 174
+NG+A+EA++LF + W+ Y + NV
Sbjct: 188 EQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNV 247
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
++ T LI+MY +CG+V A FD +++VV +AMI GYG
Sbjct: 248 VLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYG-----------------T 290
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
N YG+ ++L E+ + L+ PN + A++S
Sbjct: 291 NGYGSQ-------------------AVELFHEMRRNGLL---------PNSITFVAVLSA 322
Query: 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
A G E ++F + Y E ++V L+DM + G +D A F ++
Sbjct: 323 CAHAGLVNEGRRVFESMREEYRLVPEVEHHV----CLVDMLGRAGLLDEAYNFIKEIHEE 378
Query: 355 DV-VMRSAMTVGYGLH---GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+ +AM +H GLG + V H + P HY + ++ A AG
Sbjct: 379 PAPAIWTAMLGACKMHKNFGLGAQ--VAEHRLASEPGNP--AHYVILSNIYALAG 429
>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
Length = 853
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 148/361 (40%), Gaps = 89/361 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+P+ N M+S Y +NG E+A F + +++ NT +I YA+ G +
Sbjct: 121 EPDTFSYNIMLSCYVRNGNFEKAQSFF--------NRMPFKDAASWNT-MITGYARRGEM 171
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGY----GLHEWSAF---GSFDGLLSNEENEYGTALDC 243
+ A + F ++K+ V +AMI GY L + + F F G+++ TA+
Sbjct: 172 EKARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVA------WTAM-- 223
Query: 244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEE 303
+ G+M +EL + +T + N+ WNAMISGY +N E+
Sbjct: 224 ------------ITGYMKAKKVELAEAMFKDMTV----KKNLVTWNAMISGYVENSRPED 267
Query: 304 AVKLFPKWMDYYI------------GKSEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDR 350
+KLF ++ I G SE + + I MY KCG + A F+
Sbjct: 268 GLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGELGDAWKLFEA 327
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH----------------------------- 381
KDVV +AM GY HG E+ LFH
Sbjct: 328 MKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIG 387
Query: 382 -------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+R + +EPR HY +VDLL RAG A K I +MP +V LL A +
Sbjct: 388 MTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACR 447
Query: 435 I 435
+
Sbjct: 448 V 448
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 34/246 (13%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE---W 220
Y+ K + + +I + G +D A F K+ V ++++VG
Sbjct: 51 YLTKPSDEDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMM 110
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK----------------IVHGFMIKLG 264
A FD + + Y L C E+ + ++ G+ +
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGE 170
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324
+E L S+ + N WNAMISGY + G E+A F K+
Sbjct: 171 MEKARVLFYSMM-----EKNEVSWNAMISGYIECGDLEKAAHFF---------KAAPFRG 216
Query: 325 VIVNTVLIDMYAKCGSVDLA-PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
V+ T +I Y K V+LA MF D T+ K++V +AM GY + E+G LF +
Sbjct: 217 VVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAML 276
Query: 384 KHGIEP 389
+ GI P
Sbjct: 277 EEGIRP 282
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 108/267 (40%), Gaps = 38/267 (14%)
Query: 104 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163
++ G+M +EL + +T + N+ NAMISGY +N E+ +KLF ++
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTV----KKNLVTWNAMISGYVENSRPEDGLKLFRAMLEE 278
Query: 164 YI------------GKSEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
I G SE + + I MY KCG + A F+ KDVV +A
Sbjct: 279 GIRPNSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNA 338
Query: 211 MIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
MI GY H G+ + L +E + T D + L H ++ +G+
Sbjct: 339 MISGYAQH-----GNAEKALCLFHEMRDSKTKPDWITFVAVLLACN--HAGLVDIGM--- 388
Query: 269 SDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 328
S+ R +P + M+ + G EEA+KL I +R + V
Sbjct: 389 -TYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKL--------IRSMPFRPHAAVF 439
Query: 329 TVLIDMYAKCGSVDLAPMFFDRTLDKD 355
L+ +V+LA ++ L+ D
Sbjct: 440 GTLLGACRVHKNVELAEFAAEKLLELD 466
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/467 (23%), Positives = 181/467 (38%), Gaps = 132/467 (28%)
Query: 105 VHGFMIKLGLE---------LESDLLISLTAVCR------YQPNVTLRNAMISGYAKNGY 149
+H F IK GL+ L++ L A R + + NAM+ G +K G
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216
Query: 150 AEEAVKLFPKWMDYYIGKSEY--------------------------RN----NVIVNTV 179
+A++LF I + + R+ NV VN
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGL-LSNE 233
L+D Y+KC +D FD ++D V + +I Y ++ +A F L +
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC----------- 279
Y T L + L + GK +H ++ LGL E + LI + + C
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396
Query: 280 -RYQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------------- 309
R + + W A+I+GY +NG EEA++LF
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456
Query: 310 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG- 367
+ + Y+ +S Y+++V +VL+DMYAKCG +D A FD +++ + +A+ Y
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516
Query: 368 --------------LH--------------------GLGEEGWVLFHHIR-KHGIEPRHQ 392
LH GL +E FH ++ ++ I P +
Sbjct: 517 YGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 576
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQ 439
HYA V+D L R G + K ++ MP + + ++L + +I Q
Sbjct: 577 HYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 623
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 167/421 (39%), Gaps = 110/421 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR---YQPNVTLR---------NAM 140
L F ++G +HGF+ K + + + LI L C Y V R N+M
Sbjct: 98 LGFAKEGMQIHGFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSM 157
Query: 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
I GY K G E A +LF + E +N + N+++ + VD+A F
Sbjct: 158 IDGYVKCGLIESARELFD------LMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEM 211
Query: 201 LDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 258
+KD++ +++I GY H A G FD + + + T +D L F+ + K +
Sbjct: 212 PEKDLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFD 271
Query: 259 FMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF---------- 308
M +V +N+M+ GY +N Y EA+++F
Sbjct: 272 VMP--------------------HRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLS 311
Query: 309 -------------------PKWMD--YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
K +D YI + + + + LIDMY+KCGS+ A
Sbjct: 312 PDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAV 371
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGE---------------------------------- 373
F+ +K + +AM G +HGLGE
Sbjct: 372 FEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLV 431
Query: 374 -EGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
EG + F + RKH IEPR QHY +VDLLAR+G A I MPIE + R L+
Sbjct: 432 KEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLN 491
Query: 432 A 432
A
Sbjct: 492 A 492
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 171/422 (40%), Gaps = 131/422 (31%)
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNA 139
EF+E KI HG + K+GLEL ++ + V Y + +V L NA
Sbjct: 89 EFMEVRKI-HGCLFKMGLEL--NVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNA 145
Query: 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------------------------ 169
MI+GY K G+ +AV +F + + I S
Sbjct: 146 MINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMG 205
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
Y + V V+ LIDMY KC + A M F+ +KD+ S++ +
Sbjct: 206 YSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLF------------------SWNSI 247
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+S E CD + + F LG + D+ I++TAV P +
Sbjct: 248 ISAHE---------QCD----DHDGTLRLFGKMLGSRVLPDV-ITITAVL---PACSHLA 290
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
A++ G +GY + +GK+E ++V++N ++DMYAKCG + A + FD
Sbjct: 291 ALMHGREIHGY----------MIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFD 340
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-----------------HQ 392
+KDV + M +GY +HG G E +FH + + I+P HQ
Sbjct: 341 LMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQ 400
Query: 393 -------------------HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
HY ++D+L RAG+ A+ +P+E L + ALL A
Sbjct: 401 GRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGAC 460
Query: 434 KI 435
++
Sbjct: 461 RL 462
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 59/233 (25%)
Query: 178 TVLIDMYAKCGSVDLAPMFF-DRTLDKDVVMRSAMIVGYGLHEWSA--FGSFDGLLS--- 231
T LI+MY++C ++ A + F D +++V +A+I G+ + +A F + + S
Sbjct: 14 TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73
Query: 232 -NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------- 281
++ + + C EF+E KI HG + K+GLEL ++ + V Y
Sbjct: 74 MPDKFTFPCVVRACC--EFMEVRKI-HGCLFKMGLEL--NVFVGSALVNTYLKVDGTEDA 128
Query: 282 --------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------- 320
+ +V LWNAMI+GY K G+ +AV +F + + I S
Sbjct: 129 EKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSM 188
Query: 321 -----------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
Y + V V+ LIDMY KC + A M F+ +KD+
Sbjct: 189 GDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDL 241
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 329 TVLIDMYAKCGSVDLAPMFF-DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
T LI+MY++C ++ A + F D +++V +A+ G+ +GL +G+ + +R G+
Sbjct: 14 TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
P + VV + M +EL + V AL++ +
Sbjct: 74 MPDKFTFPCVVRACCEFMEVRKIHGCLFKMGLELNVFVGSALVNTY 119
>gi|297798862|ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313151|gb|EFH43574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 125/528 (23%), Positives = 207/528 (39%), Gaps = 128/528 (24%)
Query: 1 MQVAWVAPNGCTP--PLVLKAC-VALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIV- 56
+ + + NG T P V+KAC L+G ++H C F DR V
Sbjct: 35 LNIHPLGTNGFTAILPSVIKACSFQQEPFLLGAQLH----------CLCFKSGADRDTVV 84
Query: 57 ---FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 113
+ +Y SR ++A FD +L + Y + ++C C L + + M G
Sbjct: 85 SNSLISMYAKLSRA-YAARKVFDEMLQRDTVSYCSIVNCYCQDGLLSEAMKLLKEMYFYG 143
Query: 114 LELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 173
+S+L+ SL A+C + G + + ++ + + + +
Sbjct: 144 FVPKSELVASLLALC----------------TRMGSSSKVARMLHALV---LVDERIQES 184
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG--------YGLHEWSAFGS 225
V+++T L+DMY K A FD+ K+ V +AMI G G+ + A
Sbjct: 185 VLLSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQR 244
Query: 226 FDGLLSNEENEYGTALDCSCDLEF-LEQGKIVHGFMIKLGLELESDLLIS-LTAVCRYQP 283
+ L N C +L + L K +HGF + G + L+ + +T CR
Sbjct: 245 -ENLRPNRVTLLSVLPAC-VELGYGLRLVKEIHGFSFRHGFHSDDRLIAAFMTMYCRCGS 302
Query: 284 --------------NVTLWNAMISGYAKNGYAEEAVKLFPKW------------------ 311
+V +W++MISGYA+NG EA+ L +
Sbjct: 303 VSLSRLLFETSKVRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVVSA 362
Query: 312 ------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ I K + ++++++ LIDMYAKCGS+ A F +KD+V
Sbjct: 363 CTHSASLKIASTVHSQILKCGFMSHILLSNALIDMYAKCGSLPAAREVFYELNEKDLVSW 422
Query: 360 SAMTVGYGLHGLG-----------------------------------EEGWVLFHHIRK 384
S+M YGLHG G EE +F K
Sbjct: 423 SSMINAYGLHGHGSEALEIFKGMIKAGHEVDGMAFLAVLSACNHAGLVEEAQTIFTQAGK 482
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+ + +HY+ ++LL R G + AF+ +NMP++ + +LLSA
Sbjct: 483 YHMPVTLEHYSCYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSA 530
>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Vitis vinifera]
Length = 829
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/484 (23%), Positives = 191/484 (39%), Gaps = 135/484 (27%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQPN-------VT 135
+G+ L + ++E G+ VH M+K+G E L+ + A C + +
Sbjct: 103 FGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSIN 162
Query: 136 LRN-----AMISGYAKNGYAEEAVKLF------------------------------PKW 160
+RN A+ISGYA+ G A L
Sbjct: 163 IRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQ 222
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGYGLH- 218
+ I K ++ V +I Y++CGS++ A FD ++ +D+V ++M+ Y ++
Sbjct: 223 VHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNN 282
Query: 219 -EWSAFGSF--DGLLSNEEN--EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
E AF F +L E + Y + + + + QGK +HG +IK GLE +
Sbjct: 283 QEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISN 342
Query: 274 SLTAVCRYQPNVTL-----------------WNAMISGYAKNGYAEEAVKLFPKW----- 311
SL A+ + ++ WN++++G++++G +E+A+K F
Sbjct: 343 SLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYV 402
Query: 312 -MDYY------------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+D+Y + KS + N V + LI MY+KCG ++ A
Sbjct: 403 VIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARK 462
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLG---------------------------------- 372
FD T + +++ GY HG G
Sbjct: 463 SFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGL 522
Query: 373 -EEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
EEGW + +GI PR +HYA ++DLL RAG + A I MP E V + LL
Sbjct: 523 VEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 582
Query: 431 SAWK 434
A +
Sbjct: 583 GACR 586
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 113/291 (38%), Gaps = 64/291 (21%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
KS ++ +I YAKCG + +A F T +D V + MI G+ G+F
Sbjct: 27 KSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGF-----VNLGNF 81
Query: 227 DGLLS--NEENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGLE---LESDL 271
+ L YG A+D +C + ++E G+ VH M+K+G E
Sbjct: 82 ETALEFLKSMKRYGFAVDGYSFGSILKGVAC-VGYVEVGQQVHSMMVKMGYEGNVFAGSA 140
Query: 272 LISLTAVCRYQP------------NVTLWNAMISGYAKNGYAEEAVKL------------ 307
L+ + A C N WNA+ISGYA+ G A L
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEID 200
Query: 308 ------------------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ I K ++ V +I Y++CGS++ A FD
Sbjct: 201 DGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFD 260
Query: 350 RTLD-KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
++ +D+V ++M Y ++ EE + LF ++ G EP Y V+
Sbjct: 261 GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVIS 311
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 167/406 (41%), Gaps = 102/406 (25%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
N + + ++ YAK G +A ++F D GK NV++ +I +C V+
Sbjct: 174 NAFVGSPLVGMYAKMGLIGDAKRVF----DEMDGK-----NVVMYNTMITGLLRCKMVEE 224
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL----LSNEENEYGTALDCSCD 246
A F+ D+D + + M+ G+ + E A F + ++ ++ +G+ L
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGA 284
Query: 247 LEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR-YQP-----------NVTLWNAM 291
L LEQGK +H ++I+ + L+ + + CR +P N+ W A+
Sbjct: 285 LSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTAL 344
Query: 292 ISGYAKNGYAEEAVKLFPKWM-------DYYIGK-----------------------SEY 321
I GY +NG +EEAV++F + D+ +G S
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 404
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE------- 374
+ + V+ L+ +Y KCGS++ A FD L D V +A+ GY G +E
Sbjct: 405 MHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEK 464
Query: 375 ----------------------------GWVLFHHIRK-HGIEPRHQHYARVVDLLARAG 405
G FH ++K HGI P HY ++DL +R+G
Sbjct: 465 MLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSG 524
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI----PMQQW--ENMLQ 445
A +FI MP+ LLSA ++ + QW EN+L+
Sbjct: 525 RLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLE 570
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 45/180 (25%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR-YQP----- 132
++ +G+ L L LEQGK +H ++I+ + L+ + + CR +P
Sbjct: 271 DQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAF 330
Query: 133 ------NVTLRNAMISGYAKNGYAEEAVKLFPKWM-------DYYIGK------------ 167
N+ A+I GY +NG +EEAV++F + D+ +G
Sbjct: 331 RRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLE 390
Query: 168 -----------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
S + + V+ L+ +Y KCGS++ A FD L D V +A++ GY
Sbjct: 391 EGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYA 450
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/428 (23%), Positives = 161/428 (37%), Gaps = 133/428 (31%)
Query: 84 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY-------- 130
NEY G+ L L+ L+ G +HG M+K L+ LI + + C +
Sbjct: 150 NEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVF 209
Query: 131 ----QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 163
+ NV N++I+ Y +NG + EA+++F + M+
Sbjct: 210 DGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAK 269
Query: 164 --------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
+ + + R+++I++ L+DMYAKCG ++ A FDR ++VV ++M
Sbjct: 270 QGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSM---- 325
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
V G+ ++ L +
Sbjct: 326 ----------------------------------------VSGYAKTASVKAARLLFTKM 345
Query: 276 TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF----------------------PKWMD 313
+ NV WNA+I+GY +NG EEA++LF D
Sbjct: 346 I-----ERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLAD 400
Query: 314 YYIGKSEY--------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+G+ + ++V V LIDMY KCGSV+ F+ +++D V
Sbjct: 401 LQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSW 460
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
+AM VGY +G G E LF + G +P H + + AG K +M
Sbjct: 461 NAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCACSHAGLVQEGRKHFSSMTE 520
Query: 420 ELRLSVRR 427
E L R
Sbjct: 521 EYGLEGAR 528
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 71/330 (21%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIG-- 166
+P+ N++I+G+A++ EEA+ F K D IG
Sbjct: 113 EPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQ 172
Query: 167 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
KS++ +V + + LID+Y+KCG VD A FD ++++VV +++I Y +
Sbjct: 173 IHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGP 232
Query: 221 S--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
S A F ++ + +E + + L +QG +H ++K +L DL++S
Sbjct: 233 SREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRD-KLRDDLILS 291
Query: 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334
NA++ YAK G EA +F + NV+ T ++
Sbjct: 292 --------------NALVDMYAKCGRINEARCVFDRMPI---------RNVVSETSMVSG 328
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
YAK SV A + F + ++++VV +A+ GY +G EE LF +++ I P H +
Sbjct: 329 YAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTF 388
Query: 395 -------ARVVDL-LARAGYSN---HAFKF 413
A + DL L R +++ H F+F
Sbjct: 389 GNLLNACANLADLQLGRQAHAHVLKHGFRF 418
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 143/358 (39%), Gaps = 89/358 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
K+ Y V + T LI +Y KC + A D +++VV +AMI GY ++ A
Sbjct: 505 KTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALH 564
Query: 225 SFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-------DLLI 273
F +L + E + T L + G+ +H +IK E D+
Sbjct: 565 LFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYA 624
Query: 274 SLTAVCRY--------QPNVTLWNAMISGYAKNGYAEEAVKLFPK---------WMDY-- 314
+C + +V A+ISGYA+ G EEA+ LF + ++ Y
Sbjct: 625 KAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYAS 684
Query: 315 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
++ +++ V++ LIDMY+KCGS+ + FD ++
Sbjct: 685 VLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERT 744
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------------------- 383
V+ +AM VGY HGLG E LF ++
Sbjct: 745 VISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIF 804
Query: 384 ------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K G EP +HY VVDL RAG AF+FI MP E ++ +LL A ++
Sbjct: 805 YEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 862
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 45/206 (21%)
Query: 250 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLWNAMISG 294
+ +G+ VH MIK E L LI L CR + NV W AMISG
Sbjct: 493 IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 552
Query: 295 YAKNGYAEEAVKLFPKWM----------------------DYYIG--------KSEYRNN 324
Y++ GYA EA+ LF + + + +G K+ + ++
Sbjct: 553 YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH 612
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ V + L+DMYAK G + A FD ++DVV +A+ GY GL EE LF +++
Sbjct: 613 IFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR 672
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHA 410
G+ + YA V+ L+ +H
Sbjct: 673 EGMRSNYVTYASVLTALSGLAALDHG 698
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 63/210 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------L 42
M ++ APN T VL +C + +G ++H + F
Sbjct: 569 MLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGK 628
Query: 43 VC---YLFDGLFDRTIV-----------------FLDLYHLWSRTEWSAFGSFDGLLSNE 82
+C +FDGL +R +V LDL+ R +G+ SN
Sbjct: 629 ICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR---------EGMRSNY 679
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLI------SLTAVCRYQP 132
Y + L L L+ G+ VH +++ L L++ L+ SLT R
Sbjct: 680 VT-YASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFD 738
Query: 133 NVTLR-----NAMISGYAKNGYAEEAVKLF 157
++ R NAM+ GY+K+G EAV+LF
Sbjct: 739 SMPERTVISWNAMLVGYSKHGLGREAVELF 768
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 161/378 (42%), Gaps = 75/378 (19%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKL---------------FP---------------KWMD 162
+V L N +I GYA G EEA+ L FP K +
Sbjct: 92 DVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVH 151
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-- 220
I K + ++V V + L+ MY++ G + F + +++V +A+I GY + +
Sbjct: 152 CNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFK 211
Query: 221 SAFGSFDGLLSNEENEYG----TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LI 273
G F ++ + + L LEFL GK++HG+ IKLG++ + L LI
Sbjct: 212 EGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALI 271
Query: 274 SLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW------MDY- 314
+L C N+ WNAMI+ Y +N AVKLF + DY
Sbjct: 272 ALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYI 331
Query: 315 --------YIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS-- 360
Y+ + + +V+ T +I A G + A F R D+ V S
Sbjct: 332 TMVSVISAYLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFT 391
Query: 361 --AMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
A+ GL EEG F + R + I P +H A +VDLL RAG A++FI M
Sbjct: 392 FAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKM 451
Query: 418 PIELRLSVRRALLSAWKI 435
P+E +SV ALL + +I
Sbjct: 452 PVEPDVSVWGALLGSCRI 469
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 70/278 (25%)
Query: 172 NNVIVNTVLIDMYAKC--GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
N++++T LI + A C ++D A FD+ +DV + + +I GY + G +
Sbjct: 59 QNLLLSTKLI-ITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGY-----ADAGPCEEA 112
Query: 230 LSNEENEYGTAL------------DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
L+ N +G L C+ L L +GK VH ++K G +SD+ + +
Sbjct: 113 LALYSNMHGAGLFPDNYTFPFVVRSCAV-LSALREGKEVHCNIVKHG--FDSDVFVQSSL 169
Query: 278 VCRYQP-----------------NVTLWNAMISGYAKNGYAEEAVKLFP----------- 309
V Y N+ W A+I+GY +N Y +E + +F
Sbjct: 170 VAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNA 229
Query: 310 -------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
K + Y K +V + LI +Y KCG+V+ A FD
Sbjct: 230 VTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDG 289
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+ +++V +AM Y + G LF ++ ++
Sbjct: 290 MVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVD 327
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 174/454 (38%), Gaps = 157/454 (34%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW------MDYY------------------------IGK 167
N+M+SG+A++ EEA+ F ++ Y I K
Sbjct: 121 NSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK 180
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
S + ++V + + L+DMY+KCG+V+ A FD D++VV +++I + + A
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDV 240
Query: 226 FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F +L + +E + + L ++ G+ VHG ++K +L +D+++S V Y
Sbjct: 241 FQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK-NDKLRNDIILSNAFVDMY 299
Query: 282 ------------------------------------------------QPNVTLWNAMIS 293
+ NV WNA+I+
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 294 GYAKNGYAEEAVKLF----------------------PKWMDYYIG-------------- 317
GY +NG EEA+ LF + ++G
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKF 419
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
+S +++ V LIDMY KCG V+ + F + +++D V +AM +G+ +G G E
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479
Query: 378 LFH----------HI--------------------------RKHGIEPRHQHYARVVDLL 401
LF HI R G+ P HY +VDLL
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLL 539
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG+ A I MP++ + +LL+A K+
Sbjct: 540 GRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKV 573
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 83/279 (29%)
Query: 156 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
++ +++ + KS + N + + LID Y+KCGS++ FD+ +++ ++++ G
Sbjct: 37 IYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTG- 95
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
+ KLG E+D L
Sbjct: 96 --------------------------------------------LTKLGFLDEADSLF-- 109
Query: 276 TAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKW------MDYY------------ 315
R P + WN+M+SG+A++ EEA+ F ++ Y
Sbjct: 110 ----RSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGL 165
Query: 316 ------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
I KS + ++V + + L+DMY+KCG+V+ A FD D++VV +++
Sbjct: 166 NDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLI 225
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ +G E +F + + +EP A V+ A
Sbjct: 226 TCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264
>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
Length = 729
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 165/410 (40%), Gaps = 103/410 (25%)
Query: 104 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163
++ G++ + + +L S+ + P ++ NA++SGY + GY A LF
Sbjct: 164 MISGYIKRKHVREARELFDSMPS-----PPTSVCNALLSGYVELGYMRAAEVLF------ 212
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH----- 218
G+ + RN V N V+I YA+ GS+ +A FD +KDV+ R+A++ GY +
Sbjct: 213 --GQMQTRNPVSWN-VMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDA 269
Query: 219 EWSAFGSF------------DGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGL 265
W F DG + N+ + L D + + I+ G++ + +
Sbjct: 270 AWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDM 329
Query: 266 ELESDLLISLTAVCRYQPN--VTLWNAMISGYAKNG---YAEEAVK--LFP--------- 309
+ S A R PN WN +ISGY G E ++ L P
Sbjct: 330 D-------SANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVI 382
Query: 310 ------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
K + + K+ + ++ +V + LI MY+KCG + A F+ L +D V
Sbjct: 383 SICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTV 442
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------------- 391
+AM Y HGL +E +F + K G P H
Sbjct: 443 TWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSM 502
Query: 392 ----------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
HY+ +VDLL R+G+ + A+ F +P + R + L S
Sbjct: 503 QEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFS 552
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 44/296 (14%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ NV N M+SG +N EA K+F RN+V L+ YA+CG V
Sbjct: 62 ERNVFTWNCMVSGLIRNRMLAEARKVF--------DAMPVRNSVSW-AALLTGYARCGRV 112
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A F+R D++VV +AM+ GY + +G++ E + D+ +L
Sbjct: 113 AEARELFNRIPDRNVVSWNAMVSGY---------ARNGMV-KRARELFDMMPWRDDVSWL 162
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G++ + + +L S+ + P ++ NA++SGY + GY A LF
Sbjct: 163 ---TMISGYIKRKHVREARELFDSMPS-----PPTSVCNALLSGYVELGYMRAAEVLF-- 212
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
G+ + RN V N V+I YA+ GS+ +A FD +KDV+ R+A+ GY +G
Sbjct: 213 ------GQMQTRNPVSWN-VMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNG 265
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYA--RVVDLLARAGYSNHAFKFIMNMPIELRLS 424
+ W +F + P A ++D R + A K MP ++S
Sbjct: 266 SVDAAWKVFKDM------PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQIS 315
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 118/520 (22%), Positives = 212/520 (40%), Gaps = 119/520 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLD 59
M A V + T P V+K+ + SL G ++H + LGF+ Y+ + L +++
Sbjct: 121 MVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLIS---LYMK 177
Query: 60 LYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 119
L W A F+ + + + + ++ G++ LG S
Sbjct: 178 L-----GCAWDAEKVFEEMP---------------ERDIVSWNSMISGYL-ALGDGFSSL 216
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
+L C ++P+ R + +S + K+ + + + +V+V T
Sbjct: 217 MLFKEMLKCGFKPD---RFSTMSALGACSHVYSP-KMGKEIHCHAVRSRIETGDVMVMTS 272
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEY 237
++DMY+K G V A F+ + +++V + MI Y + AF F + +E+N
Sbjct: 273 ILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKM--SEQNGL 330
Query: 238 GTALDCSCDL---EFLEQGKIVHGFMIKLG----LELESDLLISLTAVC----------- 279
+ S +L + +G+ +HG+ ++ G + LE+ LI + C
Sbjct: 331 QPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLET-ALIDMYGECGQLKSAEVIFD 389
Query: 280 -RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------------------ 314
+ NV WN++I+ Y +NG A++LF + D
Sbjct: 390 RMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSE 449
Query: 315 ------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
YI KS Y +N I+ L+ MYA CG ++ A F+ L KDVV +++ + Y +
Sbjct: 450 GREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAV 509
Query: 369 HGLG-----------------------------------EEGWVLFHHI-RKHGIEPRHQ 392
HG G +EGW F + R++GI+P +
Sbjct: 510 HGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIE 569
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
HY ++DL+ R G + A +F+ MP + +LL+A
Sbjct: 570 HYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNA 609
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 165/427 (38%), Gaps = 122/427 (28%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRN 138
L F++ G +HGF+ K GL SDL + + Y Q + N
Sbjct: 127 LGFVKGGMQIHGFLRKTGLW--SDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYN 184
Query: 139 AMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAP 194
+MI+GY K G E A +LF P+ M N+I +I YA+ V++A
Sbjct: 185 SMINGYVKCGLIESARELFDLMPREM----------KNLISWNSMISGYAQTSEGVNIAS 234
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
F +KD++ ++MI GY H A G FD + + T +D L F+ Q
Sbjct: 235 KLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQ 294
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW- 311
K + M +V +N+M++GY +N EA+++F
Sbjct: 295 AKTLFDQM--------------------PLRDVVAYNSMMAGYVQNKCHMEALEIFNDME 334
Query: 312 ------------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
M YI + ++ + LIDMY+KCGS+
Sbjct: 335 KESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSI 394
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------- 382
A + F+ +K + +AM G +HGLGE + + I
Sbjct: 395 QHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNAC 454
Query: 383 -----------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
RKH IEPR QHY +VD+L+R+G A I MPIE +
Sbjct: 455 SHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVI 514
Query: 426 RRALLSA 432
R L+A
Sbjct: 515 WRTFLTA 521
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 61/301 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
NV+V T L+DMY+KCG +DLA + FD ++ V + MI DG + N
Sbjct: 126 NVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMI--------------DGCMRN 171
Query: 233 EE-NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAVCRYQPNVTLWN 289
E E D + + + ++ GF+ K E LE + L V +P+
Sbjct: 172 GEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGV---EPDYVTII 228
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
++++ A G + W++ ++ K ++++N+ ++ LIDMY++CG + LA F+
Sbjct: 229 SVLAACANLGALGLGL-----WINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFE 283
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG----------------------- 386
+ + +V ++M VG+ L+G EE F+ +RK G
Sbjct: 284 QMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDE 343
Query: 387 -------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
I PR +HY +VDL +RAG A I NMP++ V +LL+A
Sbjct: 344 GLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAAC 403
Query: 434 K 434
+
Sbjct: 404 R 404
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 26/234 (11%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALP--SLLMGPRVHGQIFSLGF-----------LVCYLF 47
MQ+A V PN T +L AC P L G +H + LG + Y
Sbjct: 80 MQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSK 139
Query: 48 DGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEE-NEYGTALDCSCDLEFLEQGKIVH 106
G D + D H+ + W+ DG + N E E D + + + ++
Sbjct: 140 CGQLDLAWLMFDEMHVRNSVSWNTM--IDGCMRNGEVGEAIVLFDQMSERDAISWTSMIG 197
Query: 107 GFMIKLGLE--LESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164
GF+ K E LE + L V +P+ ++++ A G + W++ +
Sbjct: 198 GFVKKGCFEQALEWFREMQLAGV---EPDYVTIISVLAACANLGALGLGL-----WINRF 249
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ K ++++N+ ++ LIDMY++CG + LA F++ + +V ++MIVG+ L+
Sbjct: 250 VMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALN 303
>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
Length = 741
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 161/415 (38%), Gaps = 119/415 (28%)
Query: 139 AMISGYAKNGYAEEAVKLFPKWM-DYYIGKSEYRNNVIVNTV------------------ 179
AM+SGYA +EEA +LF + + + K+E+ +++ V
Sbjct: 194 AMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLK 253
Query: 180 ------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS-- 225
L+ MYAK +D A F + +++ + SAMI GY + + +
Sbjct: 254 DGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATM 313
Query: 226 ----FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
S E + L+ S D+ L GK HG M+KLG E + L+ + A
Sbjct: 314 FLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAK 373
Query: 279 CRYQ-------------PNVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
C +V +W AMI+G+ +NG EEA+ L+
Sbjct: 374 CGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTS 433
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + I K + V T L MY+KCG+++ + + F R D+D
Sbjct: 434 VLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRD 493
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------------ 391
++ +++ G+ HG G + LF ++ GI P H
Sbjct: 494 IISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFR 553
Query: 392 ------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
HYA +VD+L+RAG A FI ++ I+ + R +L A +
Sbjct: 554 AMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLGACR 608
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 127/278 (45%), Gaps = 53/278 (19%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
S NNV V+T L++MY K G++ A FD+ ++ V +AM+ GY + S AF
Sbjct: 151 SSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFE 210
Query: 225 SFDGLLSN---EENEY-GTALDCSCDLEF-LEQGKIVHGFMIKLGL----ELESDLL-IS 274
F +L E+NE+ TA+ + + L G +HG ++K GL +E+ L+ +
Sbjct: 211 LFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMY 270
Query: 275 LTAVC----------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY- 314
A C + N W+AMI+GYA+NG A+ A +F P +
Sbjct: 271 AKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFV 330
Query: 315 ------------YIGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD- 353
+GK + V V + L+DMYAKCG A F + D
Sbjct: 331 GILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDV 390
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391
DVV+ +AM G+ +G EE +L+ + K G+ P +
Sbjct: 391 DDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSY 428
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 46/175 (26%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQ-------------PN 133
L+ S D+ L GK HG M+KLG E + L+ + A C +
Sbjct: 333 LNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDD 392
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFP------------------------------KWMDY 163
V + AMI+G+ +NG EEA+ L+ K +
Sbjct: 393 VVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHA 452
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
I K + V T L MY+KCG+++ + + F R D+D++ +++I G+ H
Sbjct: 453 QILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQH 507
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 162/387 (41%), Gaps = 104/387 (26%)
Query: 153 AVKLFPKWMDYYIGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
A+K D + GK Y++++ V++ LI MY+ CG ++ A FD ++
Sbjct: 82 AIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRN 141
Query: 205 VVMRSAMIVGYGLH--EWSAFGSFDGLLSNEENE--------YGTALDCSCDLEFLEQG- 253
+V ++MI GY L+ A F LL +E ++ G S +G
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201
Query: 254 -KIVHGFMIKLGLELESDLLISL-----------TAVCR------YQPNVTLWNAMISGY 295
+ +H F+IK G + + +L AV R + +N+++S Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261
Query: 296 AKNGYAEEAVKLFPKWMD-----------------------YYIGKSEY--------RNN 324
A++G + EA ++F + + IGK + ++
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDD 321
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG-------------- 370
VIV T +IDMY KCG V+ A FDR +K+V +AM GYG+HG
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381
Query: 371 ---------------------LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSN 408
L EGW F+ ++ + G+EP +HY +VDLL RAG+
Sbjct: 382 SGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQ 441
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKI 435
A+ I M ++ + +LL+A +I
Sbjct: 442 KAYDLIQRMKMKPDSIIWSSLLAACRI 468
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 30/128 (23%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAV---------KLFP-------------KWMDYYIGKS 319
+ +V WN++I+ A++G + EA+ L+P D + GK
Sbjct: 38 KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97
Query: 320 E--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
Y++++ V++ LI MY+ CG ++ A FD +++V ++M GY L+G
Sbjct: 98 THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGN 157
Query: 372 GEEGWVLF 379
+ LF
Sbjct: 158 ALDAVSLF 165
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 119/322 (36%), Gaps = 86/322 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF-----------------------LVCYLFDGLFD 52
V+ AC +P+ + +H + GF + +FD + D
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248
Query: 53 R-TIVFLDLYHLWSRTEWS--AFGSFDGLLSNEENEY-----GTALDCSCDLEFLEQGKI 104
+ + + + +++++ S AF F L+ N+ + T L L GK
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308
Query: 105 VHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAMISGYAKN 147
+H +I++GLE D+++ + + Y NV AMI+GY +
Sbjct: 309 IHDQVIRMGLE--DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMH 366
Query: 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207
G+A +A++LFP +D S R N I + + A C
Sbjct: 367 GHAAKALELFPAMID-----SGVRPNYI---TFVSVLAACSH------------------ 400
Query: 208 RSAMIVGYGLHEWSAFGSFDGLLSNEE--NEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
G + W F + G E YG +D FL++ + + ++ +
Sbjct: 401 -----AGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---YDLIQRMKM 452
Query: 266 ELESDLLISLTAVCRYQPNVTL 287
+ +S + SL A CR NV L
Sbjct: 453 KPDSIIWSSLLAACRIHKNVEL 474
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 154/359 (42%), Gaps = 63/359 (17%)
Query: 115 ELESDLLISLTAVCRYQP-NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 173
E E LL+ +C P N +++ + EE ++ + I K Y N+
Sbjct: 124 EPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQ-----ITKLGYEND 178
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
V LI+ YA G+ LA + FDR D V +++I GY + G D L
Sbjct: 179 VYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGY-----AKAGKMDIAL--- 230
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLWNAMI 292
T + + ++ G+ ++ G+ E+ L +P NV+L NA+
Sbjct: 231 -----TLFRKMVEKNAISWTTMISGY-VQAGMHKEALQLFHEMQNSDVEPDNVSLANAL- 283
Query: 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
S A+ G E+ KW+ Y+ K+ R + ++ VLIDMYAKCG + A F
Sbjct: 284 SACAQLGALEQG-----KWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQ 338
Query: 353 DKDVVMRSAMTVGYGLHGLG-----------------------------------EEGWV 377
K V +A+ GY HG G EEG +
Sbjct: 339 RKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKL 398
Query: 378 LFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+F+++ R + ++P +HY VVDLL+RAG + A +FI MP++ + ALL A +I
Sbjct: 399 IFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRI 457
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 148/364 (40%), Gaps = 95/364 (26%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD--VVMRSAMIVGYGLHEWS 221
++ K V T LI MY KCG V A F+ V +A+I GY +
Sbjct: 78 HVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKV 137
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDL---------EFLEQGKIVHGFMIKLGLELESDLL 272
++ + E G ++D L E+L G+ +HG +K GL+ E +L
Sbjct: 138 TDAAY---MFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVL 194
Query: 273 ISLTAVCRYQPNV---------------TLWNAMISGYAKNGYAEEAVKLF--------- 308
S + +V WNA+ISGY++NG A + ++L+
Sbjct: 195 NSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVC 254
Query: 309 -----------------PKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMF 347
K + + +GK N NV V+ I MYA+CG++ A
Sbjct: 255 PDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAV 314
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-------------------- 387
FD K +V +AM YG+HG+GE G +LF + K GI
Sbjct: 315 FDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLT 374
Query: 388 ----------------EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
EP +HY+ +VDLL RAG + A +FI +MP+E +V ALL
Sbjct: 375 DKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLG 434
Query: 432 AWKI 435
A KI
Sbjct: 435 ACKI 438
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 77/294 (26%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDLY 61
+P+ + P +LK+C +L + G ++H + G F++ L ++ + + D
Sbjct: 50 SPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALIS-MYCKCGLVADAR 108
Query: 62 HLWSRTEWSAFGS--FDGLLS---------------NEENEYGTALDCSCDL-------- 96
++ S+ S ++ L+S E G ++D L
Sbjct: 109 KVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTV 168
Query: 97 -EFLEQGKIVHGFMIKLGLELESDLL---ISLTAVC-------RYQPNVTLR-----NAM 140
E+L G+ +HG +K GL+ E +L I++ C R + ++ NA+
Sbjct: 169 PEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAV 228
Query: 141 ISGYAKNGYAEEAVKLF--------------------------PKWMDYYIGKSEYRN-- 172
ISGY++NG A + ++L+ K + + +GK N
Sbjct: 229 ISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGF 288
Query: 173 --NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
NV V+ I MYA+CG++ A FD K +V +AMI YG+H G
Sbjct: 289 VPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIG 342
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/421 (23%), Positives = 165/421 (39%), Gaps = 106/421 (25%)
Query: 99 LEQGKIVHGFMIKLGL---ELESDLLISLTAVC------------RYQPNVTLRNAMISG 143
+++G+ VH +++ G E S L+ C QP + L +I
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRA 166
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
Y + E+A++LF K M +I KS +
Sbjct: 167 YVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
V++ LI Y +CGS+D A FF T K++V+ + MI H+ S E
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMI-----HQ-----------SVE 270
Query: 234 EN--EYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
N E G L S D + + ++ GF ++G E+ PN +
Sbjct: 271 HNNLELGKQLFQSMPDRDVVSWNSMIGGF-ARIGQYQEALTWFHEMEFSGVSPNALTLLS 329
Query: 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+S A +G + W+ Y+ K++ + +++ LIDMY+KCG +D A F+
Sbjct: 330 TLSACASHGALDTGA-----WIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE 384
Query: 351 TLDKDVVMRSAMTVGYGLHGLGE-----------------------------------EG 375
+ +D+ +++ G +HG GE +G
Sbjct: 385 STRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQG 444
Query: 376 WVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
W F + K G+ P+ +HY +VDLL R G A+ IM MP+E + A LSA +
Sbjct: 445 WWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACR 504
Query: 435 I 435
+
Sbjct: 505 V 505
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 162/423 (38%), Gaps = 114/423 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRN 138
L F++ G +HGF+ K GL SDL + + Y + + N
Sbjct: 127 LGFVKGGMQIHGFLKKTGLW--SDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYN 184
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
+MI GY K G A +LF + E +N + N+++ VD+A F
Sbjct: 185 SMIDGYVKCGLIVSARELFD------LMPMEMKNLISWNSMISGYAQTSDGVDIASKLFA 238
Query: 199 RTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
+KD++ ++MI GY H A G FD + + + T +D L F+ K +
Sbjct: 239 DMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTL 298
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW----- 311
M +V +N+M++GY +N Y EA+++F
Sbjct: 299 FDQM--------------------PHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESH 338
Query: 312 --------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
M YI + ++ + LIDMY+KCGS+ A
Sbjct: 339 LLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAM 398
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------------------- 382
+ F+ +K + +AM G +HGLGE + + I
Sbjct: 399 LVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSG 458
Query: 383 -------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
RKH IEPR QHY +VD+L+R+G A I MP+E + R
Sbjct: 459 LVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTF 518
Query: 430 LSA 432
L+A
Sbjct: 519 LTA 521
>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 150/352 (42%), Gaps = 94/352 (26%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSF- 226
Y N++ V + ++++YAKCG++D A FDR +D V S M+ G+ A +
Sbjct: 134 YGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYM 193
Query: 227 ----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
DGL ++E G C+ + G VHG++++ +++ D++IS + V Y
Sbjct: 194 RMRRDGLEADEVVIVGVMQACAATGD-ARMGASVHGYLLRHAMQM--DVVISTSLVDMYA 250
Query: 283 PNVTL-----------------WNAMISGYAKNGYAEEAVKLFPKWMDYY---------- 315
N W+A+IS A+ G A+EA+ LF + M
Sbjct: 251 KNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLF-RMMQVSGLHPNSGPVV 309
Query: 316 -------------IGKSEY-------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+GKS + + +V T +IDMY+KCGS+ A M FD+ + +D
Sbjct: 310 GALLACSDLGLLKLGKSIHGFILRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRD 369
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------------- 384
++ + M G HG G + LF +++
Sbjct: 370 LISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFN 429
Query: 385 -----HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+GIEP +H +VDLLAR+G A + ++ + +S+ ALLS
Sbjct: 430 CMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLS 481
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 143/394 (36%), Gaps = 103/394 (26%)
Query: 8 PNGCTPPLVLKACVALPSLLMGP----RVHGQIFSLGFLVC------YLFDGLFDRTIVF 57
P+ T L L AC L L G R G + VC Y G D +
Sbjct: 101 PDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKV 160
Query: 58 LDLYHLWSRTEWSAFGS-------------------FDGLLSNEENEYGTALDCSCDLEF 98
D R WS + DGL ++E G C+ +
Sbjct: 161 FDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGD- 219
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN------------VTLRN-----AMI 141
G VHG++++ +++ D++IS + V Y N + RN A+I
Sbjct: 220 ARMGASVHGYLLRHAMQM--DVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALI 277
Query: 142 SGYAKNGYAEEAVKLFPKWMDYY-----------------------IGKSEY-------R 171
S A+ G A+EA+ LF + M +GKS +
Sbjct: 278 SQLAQYGNADEALGLF-RMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLE 336
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL 229
+ +V T +IDMY+KCGS+ A M FD+ + +D++ + MI G H A F +
Sbjct: 337 LDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEM 396
Query: 230 LSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMI-KLGLELESDLLI----------- 273
NE + + L +E+GK M+ + G+E L+
Sbjct: 397 KRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGL 456
Query: 274 -----SLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
L A +P +++ A++SG N E
Sbjct: 457 VEEANGLVASLHSKPTISILVALLSGCLNNNKLE 490
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 132/593 (22%), Positives = 238/593 (40%), Gaps = 164/593 (27%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFD----------GLFDRTIVFLDLYHLWS 65
VL+AC +L +G VHG+I G V ++ + G D
Sbjct: 105 VLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRD 164
Query: 66 RTEWSAF--------GSFDGL-----LSNEENEYGT----ALDCSC-DLEFLEQGKIVHG 107
WS+ S +GL L +++ E + ++ +C +L FL K VHG
Sbjct: 165 LVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHG 224
Query: 108 FMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGYAKNGYAEE 152
+I+ +E +D L+ + + C + ++ AMIS Y ++ + ++
Sbjct: 225 CIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQ 284
Query: 153 AVKLFPKWMDYYI----------------------GKSEY--------RNNVIVNTVLID 182
A+++F + +++ + GKS + ++ + LI+
Sbjct: 285 ALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIE 344
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSF-----DGLLSNEE 234
YA+ G + ++++ + +I Y GL + A G F G + +
Sbjct: 345 YYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFK-EALGIFVQMQRQGQIPDSF 403
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVC-----------RY 281
+ + C+ ++ L G +HG+ IK + E + LI + + C R
Sbjct: 404 SLSSSISACA-NVGLLWLGHQIHGYAIKRHILDEFVQNSLIDMYSKCGHVDLAYLIFDRI 462
Query: 282 QP-NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------K 310
Q +V WN+MI G+++ G + EA++LF K
Sbjct: 463 QSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGK 522
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
W+ + + + ++ ++T LIDMYAKCG + +A FD ++ VV SAM G G+HG
Sbjct: 523 WLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHG 582
Query: 371 -----------------------------------LGEEGWVLFHHIRKHGIEPRHQHYA 395
EEG F+ ++ +EP +H+A
Sbjct: 583 DIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMKNFEVEPNLEHFA 642
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR 448
+VDLL+RAG + A++ I +MP S+ ALL+ +I Q +M++ I
Sbjct: 643 CMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRI--HQRMDMIRNIE 693
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 126/531 (23%), Positives = 212/531 (39%), Gaps = 139/531 (26%)
Query: 3 VAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYH 62
V+ + P+ T P VLKAC +L+ G R+H F LGF V L H
Sbjct: 211 VSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQW---------NVFVAASLIH 258
Query: 63 LWSRTEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
++SR ++ FD + + + + Q V M G+++
Sbjct: 259 MYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVT 318
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
++S+ VC +++ AM+ + Y+ K ++ V+ L
Sbjct: 319 VVSILPVCPQLGDIS--TAML-------------------IHLYVIKHGLEFDLFVSNAL 357
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL--------- 229
I+MYAK G+++ A F + DVV +++I Y ++ +A G F +
Sbjct: 358 INMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDL 417
Query: 230 --LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP---- 283
L + + + DC + + VHGF+++ G +E D++I V Y
Sbjct: 418 LTLVSLASIVAQSRDC-------KNSRSVHGFIMRRGWLME-DVVIGNAVVDMYAKLGLL 469
Query: 284 -------------NVTLWNAMISGYAKNGYAEEAVKLFP-------------KWMDY--- 314
+V WN +I+GYA+NG A EA++++ W+
Sbjct: 470 DSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 529
Query: 315 --YIG-------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
++G K+ +V V T LID+Y KCG + A F + + V
Sbjct: 530 YAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTW 589
Query: 360 SAMTVGYGLHGLGE-----------------------------------EGWVLFHHIRK 384
+A+ +G+HG E EG F +++
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 649
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI+P +HY +VDLL RAGY A+ FI +MP++ S+ ALL A +I
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRI 700
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 49/244 (20%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGL 229
++ ++T L+++YA G V L+ FD+ KDV ++MI Y H A G F L
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQL 208
Query: 230 L--SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL---------TAV 278
L S ++ T L G+ +H + KLG + + SL T +
Sbjct: 209 LLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI 268
Query: 279 CRY----QP--NVTLWNAMISGYAKNGYAEEAVKLF----------------------PK 310
R P ++ WNAMISG +NG A +A+ + P+
Sbjct: 269 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328
Query: 311 WMD--------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
D Y+ K ++ V+ LI+MYAK G+++ A F + DVV +++
Sbjct: 329 LGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSI 388
Query: 363 TVGY 366
Y
Sbjct: 389 IAAY 392
>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
Length = 721
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 171/396 (43%), Gaps = 84/396 (21%)
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAV--------------CRYQPNVTLRNAMIS 142
E L GK VHG ++K+G E++ L +L A+ CR + + R ++++
Sbjct: 223 ELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRHDAFSRTSLLT 282
Query: 143 GYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRN 172
YA+NG EAV++F K + Y K+ +R
Sbjct: 283 AYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRL 342
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF------ 226
+ ++ ++ +Y KCG + + + F+ +KD + +A++ Y ++ S F
Sbjct: 343 DTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMV 402
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
GL S+ CS L G +H ++KLG++ +
Sbjct: 403 RKGLESSIFCITSVLRACSAT-SSLSCGWQIHSRVVKLGVD----------------DDT 445
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLIDMYAKCGSVDLA 344
++ NA+++ YAK G + A+K+F + RN I++ LI +++ G+ A
Sbjct: 446 SVENALVTMYAKCGVVQVALKIF----------NSMRNRGIISWNALITSFSQHGNEVAA 495
Query: 345 PMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIR-KHGIEPRHQHYARVVD 399
FD ++ V VG GL EG F ++ K+ +EP+ +HY +VD
Sbjct: 496 IQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVD 555
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L ARAG + A KFI MP + V ALL++ ++
Sbjct: 556 LFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRV 591
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 58/313 (18%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
R +PN A+++G A+ A ++ + + + E V L+DMYAKCG
Sbjct: 100 RDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES-----VAGTLVDMYAKCG 154
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE---NEYGTALDCSC 245
V + F T + V+ ++MI H S + +L + + T SC
Sbjct: 155 RVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSC 214
Query: 246 DL------EFLEQGKIVHGFMIKLGLELESDLLISLTAV--------------CRYQPNV 285
L E L GK VHG ++K+G E++ L +L A+ CR + +
Sbjct: 215 ILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRHDA 274
Query: 286 TLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 315
++++ YA+NG EAV++F K + Y
Sbjct: 275 FSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCY 334
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
K+ +R + ++ ++ +Y KCG + + + F+ +KD + +A+ Y + L +E
Sbjct: 335 ALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEA 394
Query: 376 WVLFHHIRKHGIE 388
F + + G+E
Sbjct: 395 LFFFREMVRKGLE 407
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 162/423 (38%), Gaps = 114/423 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRN 138
L F++ G +HGF+ K GL SDL + + Y + + N
Sbjct: 134 LGFVKGGMQIHGFLKKTGLW--SDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYN 191
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
+MI GY K G A +LF + E +N + N+++ VD+A F
Sbjct: 192 SMIDGYVKCGLIVSARELFD------LMPMEMKNLISWNSMISGYAQTSDGVDIASKLFA 245
Query: 199 RTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
+KD++ ++MI GY H A G FD + + + T +D L F+ K +
Sbjct: 246 DMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTL 305
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW----- 311
M +V +N+M++GY +N Y EA+++F
Sbjct: 306 FDQM--------------------PHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESH 345
Query: 312 --------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
M YI + ++ + LIDMY+KCGS+ A
Sbjct: 346 LLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAM 405
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------------------- 382
+ F+ +K + +AM G +HGLGE + + I
Sbjct: 406 LVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSG 465
Query: 383 -------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
RKH IEPR QHY +VD+L+R+G A I MP+E + R
Sbjct: 466 LVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTF 525
Query: 430 LSA 432
L+A
Sbjct: 526 LTA 528
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 119/499 (23%), Positives = 192/499 (38%), Gaps = 119/499 (23%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------------------LVC 44
V PN T V++AC L +G V G I G+ L
Sbjct: 180 VKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAR 239
Query: 45 YLFDGLFDRTIV----FLDLYHLWSRTEWSAFGS----FDGLLSNEENEYGTALDCSCDL 96
+FD + ++ +V LDLY E G FD + E + + C
Sbjct: 240 EVFDRMEEKDVVSWTAILDLY-----VEMDELGEARRIFDEMPQRNEVSWSAMIARYCQS 294
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL 156
+ E+ + MI+ G ++PN++ ++++S A +V+
Sbjct: 295 GYPEESLRLFCRMIQEG----------------FKPNISCFSSILSALA-------SVEA 331
Query: 157 FPKWMDYY--IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
M+ + + K + +V V++ LIDMY KCG FD L+K++V +AM+ G
Sbjct: 332 LQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGG 391
Query: 215 YGL--HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
Y L H A F+ + + + D E ++ V MI LG E+
Sbjct: 392 YSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLG-EI----- 445
Query: 273 ISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 332
PN + +++++ A ++ L K + I Y V T L
Sbjct: 446 ----------PNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTY-----VGTALT 490
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-------- 384
DMYAK G ++ + F+R K+ V +AM G GL EE LF + K
Sbjct: 491 DMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNE 550
Query: 385 -----------------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
+G++P+ +H+ VVD+L+RAG A +FI
Sbjct: 551 VMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIY 610
Query: 416 NMPIELRLSVRRALLSAWK 434
+MP + + ALLS K
Sbjct: 611 SMPFQPETNAWAALLSGCK 629
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 131/330 (39%), Gaps = 91/330 (27%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
++ + N MIS + G +EA KLF + + N I T LI + K G V
Sbjct: 86 DLVVHNCMISANVQRGNLDEARKLFDEMP---------QTNEISWTALISGFMKYGRVRE 136
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNE----ENEYGTALDCSCD 246
+ +F+R ++VV +A I GY + +S A F LL +E + + + + +
Sbjct: 137 SMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACAN 196
Query: 247 LEFLEQGKIVHGFMIKLGLE----------------------------LESDLLISLTAV 278
L G V G ++K G E +E ++S TA+
Sbjct: 197 LGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAI 256
Query: 279 CRY------------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------ 314
Q N W+AMI+ Y ++GY EE+++LF + +
Sbjct: 257 LDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNI 316
Query: 315 ------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
++ K + +V V++ LIDMY KCG FD
Sbjct: 317 SCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDT 376
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
L+K++V +AM GY L+G EE LF+
Sbjct: 377 ILEKNMVSWNAMVGGYSLNGHMEEAKYLFN 406
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
++ + N MIS + G +EA KLF + + N I T LI + K G V
Sbjct: 86 DLVVHNCMISANVQRGNLDEARKLFDEMP---------QTNEISWTALISGFMKYGRVRE 136
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR 403
+ +F+R ++VV +A GY +G E LF + + ++P + VV A
Sbjct: 137 SMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACAN 196
Query: 404 AG 405
G
Sbjct: 197 LG 198
>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial; Flags: Precursor
gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 775
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 130/594 (21%), Positives = 221/594 (37%), Gaps = 189/594 (31%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFS--------------------LG 40
M ++ +P+ T P+V+ AC L +G VHG + G
Sbjct: 116 MLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCG 175
Query: 41 FL--VCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG----------- 87
FL C +FD + DR +V W+A G + N E+E G
Sbjct: 176 FLQDACLVFDEMPDRDVV-----------AWTAI--ISGHVQNGESEGGLGYLCKMHSAG 222
Query: 88 --------TALDC---SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-- 133
L+C +C +L L++G+ +HGF +K GL + S+ + N
Sbjct: 223 SDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPS 282
Query: 134 ---VTLR----------NAMISGYAKNGYAEEAVKLF----------------------- 157
++ R ++I+ A++G EE+ +F
Sbjct: 283 EAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELG 342
Query: 158 -------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRS 209
K ++ + + + V L+ MY K + +A F R ++ + +
Sbjct: 343 KMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWN 402
Query: 210 AMIVGYGLHEWSA-----FGSFDGLLSNEENEYGTALDCSCD-LEFLEQGKIVHGFMIKL 263
M+ GYG + F L ++ T++ SC + + GK +H +++K
Sbjct: 403 TMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKT 462
Query: 264 GLELE--------------SDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
L+L DL ++ C NV WNAMI+ Y +E+A+ LF
Sbjct: 463 SLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFD 522
Query: 310 KWMD------------------------------YYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ + YI ++E+ N+ ++ LIDMYAKCG
Sbjct: 523 RMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCG 582
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG----------------------------- 370
++ + FD KD V + M GYG+HG
Sbjct: 583 HLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLS 642
Query: 371 ------LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
L E+G LF + ++ ++P +HY+ +VDLL+R+G A +M+MP
Sbjct: 643 ACTHAGLVEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMP 696
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 116/288 (40%), Gaps = 73/288 (25%)
Query: 102 GKIVHGFMIKLGLELE--------------SDLLISLTAVCRYQPNVTLRNAMISGYAKN 147
GK +H +++K L+L DL ++ C NV NAMI+ Y
Sbjct: 452 GKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHC 511
Query: 148 GYAEEAVKLFPKWMD------------------------------YYIGKSEYRNNVIVN 177
+E+A+ LF + + YI ++E+ N+ ++
Sbjct: 512 EQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLS 571
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEEN 235
LIDMYAKCG ++ + FD KD V + MI GYG+H SA FD + ++
Sbjct: 572 AALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVK 631
Query: 236 EYGT---ALDCSCD-LEFLEQGKIV----HGFMIKLGLELES---DLLI---------SL 275
G AL +C +EQGK + H + +K L+ S DLL S
Sbjct: 632 PTGPTFLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAEST 691
Query: 276 TAVCRYQPNVTLWNAMISGYAKNG-------YAEEAVKLFPKWMDYYI 316
+ P+ +W ++S +G AE AV P+ YYI
Sbjct: 692 VMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYI 739
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 106/273 (38%), Gaps = 57/273 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL 229
N+ V + LI YA G +L+ F +D+ + +++I + G + S F L
Sbjct: 58 NIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSLCFFFSML 117
Query: 230 LSNEENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--- 283
LS + ++ TA + +L + G VHG ++K G + + + + V Y
Sbjct: 118 LSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHG-GFDRNTAVGASFVYFYSKCGF 176
Query: 284 --------------NVTLWNAMISGYAKNGYAEEAV--------------KLFPKWMDY- 314
+V W A+ISG+ +NG +E + K P+ ++
Sbjct: 177 LQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECG 236
Query: 315 ------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+ K+ ++ V + + Y+K G+ A + F D+D+
Sbjct: 237 FQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDM 296
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+++ G EE + +F ++ G+ P
Sbjct: 297 FSWTSIIASLARSGDMEESFDMFWEMQNKGMHP 329
>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
Length = 671
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 171/396 (43%), Gaps = 84/396 (21%)
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAV--------------CRYQPNVTLRNAMIS 142
E L GK VHG ++K+G E++ L +L A+ CR + + R ++++
Sbjct: 223 ELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRHDAFSRTSLLT 282
Query: 143 GYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRN 172
YA+NG EAV++F K + Y K+ +R
Sbjct: 283 AYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRL 342
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF------ 226
+ ++ ++ +Y KCG + + + F+ +KD + +A++ Y ++ S F
Sbjct: 343 DTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMV 402
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
GL S+ CS L G +H ++KLG++ +
Sbjct: 403 RKGLESSIFCITSVLRACSAT-SSLSCGWQIHSRVVKLGVD----------------DDT 445
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLIDMYAKCGSVDLA 344
++ NA+++ YAK G + A+K+F + RN I++ LI +++ G+ A
Sbjct: 446 SVENALVTMYAKCGVVQVALKIF----------NSMRNRGIISWNALITSFSQHGNEVAA 495
Query: 345 PMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIR-KHGIEPRHQHYARVVD 399
FD ++ V VG GL EG F ++ K+ +EP+ +HY +VD
Sbjct: 496 IQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVD 555
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L ARAG + A KFI MP + V ALL++ ++
Sbjct: 556 LFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRV 591
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 58/313 (18%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
R +PN A+++G A+ A ++ + + + E V L+DMYAKCG
Sbjct: 100 RDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES-----VAGTLVDMYAKCG 154
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE---NEYGTALDCSC 245
V + F T + V+ ++MI H S + +L + + T SC
Sbjct: 155 RVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSC 214
Query: 246 DL------EFLEQGKIVHGFMIKLGLELESDLLISLTAV--------------CRYQPNV 285
L E L GK VHG ++K+G E++ L +L A+ CR + +
Sbjct: 215 ILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRHDA 274
Query: 286 TLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 315
++++ YA+NG EAV++F K + Y
Sbjct: 275 FSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCY 334
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
K+ +R + ++ ++ +Y KCG + + + F+ +KD + +A+ Y + L +E
Sbjct: 335 ALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEA 394
Query: 376 WVLFHHIRKHGIE 388
F + + G+E
Sbjct: 395 LFFFREMVRKGLE 407
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 140/358 (39%), Gaps = 86/358 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--S 221
++ S++ +V ++ LI +Y KCG+V A FD +D+ +++I GY ++
Sbjct: 89 HLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDE 148
Query: 222 AFGSFDGLLSNEENEYG----TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
A G G+L G + L + G+ +H +K + L+
Sbjct: 149 ALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLD 208
Query: 275 LTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
+ A C N WNA+I+G+A+ G E + +F
Sbjct: 209 MYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFT 268
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KW+ ++ KS R + V ++DMYAK GS+ A FDR
Sbjct: 269 YSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVD 328
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI------------------------- 387
KDVV ++M + +GLG E F +RK G+
Sbjct: 329 KKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQ 388
Query: 388 ----------EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP HY VVDLL RAG N A FI MP++ +V ALL + ++
Sbjct: 389 YFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 30/109 (27%)
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
NA+I+G+A+ G E + +F KW+ ++ K
Sbjct: 235 NALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIK 294
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
S R + V ++DMYAK GS+ A FDR KDVV ++M+ +
Sbjct: 295 SGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFA 343
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 107/426 (25%), Positives = 171/426 (40%), Gaps = 114/426 (26%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
L +G+ +HG ++KLG +L+ + + ++IS YA+NG E+A K+F
Sbjct: 81 LIEGQQIHGHVLKLGYDLD----------------MYVNTSLISMYAQNGRLEDAHKVFD 124
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--G 216
+ S +R+ V+ T LI YA G ++ A FD KDVV +AMI GY
Sbjct: 125 R--------SSHRH-VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVET 175
Query: 217 LHEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---S 269
+ A + ++ +E+ T + +E G+ +H ++ G
Sbjct: 176 CNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIV 235
Query: 270 DLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------- 309
++LI L + C + +V WN +I G+ +EA+ LF
Sbjct: 236 NVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES 295
Query: 310 ----------------------KWMDYYIGK--SEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+W+ YI K N + T LIDMYAKCG ++ A
Sbjct: 296 PNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAK 355
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP---------------- 389
FD L + + +AM G+ +HG + LF +RK+GI+P
Sbjct: 356 QVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSG 415
Query: 390 -----RH---------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
RH +HY ++DLL G A + I MP+E + +L
Sbjct: 416 MLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSL 475
Query: 430 LSAWKI 435
L A K+
Sbjct: 476 LKACKM 481
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 140/358 (39%), Gaps = 86/358 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--S 221
++ S++ +V ++ LI +Y KCG+V A FD +D+ +++I GY ++
Sbjct: 89 HLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDE 148
Query: 222 AFGSFDGLLSNEENEYG----TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 274
A G G+L G + L + G+ +H +K + L+
Sbjct: 149 ALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLD 208
Query: 275 LTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
+ A C N WNA+I+G+A+ G E + +F
Sbjct: 209 MYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFT 268
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KW+ ++ KS R + V ++DMYAK GS+ A FDR
Sbjct: 269 YSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVD 328
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI------------------------- 387
KDVV ++M + +GLG E F +RK G+
Sbjct: 329 KKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQ 388
Query: 388 ----------EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP HY VVDLL RAG N A FI MP++ +V ALL + ++
Sbjct: 389 YFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 30/109 (27%)
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
NA+I+G+A+ G E + +F KW+ ++ K
Sbjct: 235 NALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIK 294
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
S R + V ++DMYAK GS+ A FDR KDVV ++M+ +
Sbjct: 295 SGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFA 343
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/443 (24%), Positives = 176/443 (39%), Gaps = 130/443 (29%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCRYQP---------- 132
+ L LE L G+ +H + ++ G +E+ L+ + C+ QP
Sbjct: 538 ASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCK-QPKKGRLVFDGV 596
Query: 133 ---NVTLRNAMISGYAKNGYAEEAVKLF----------PKWMDY---------------- 163
V + NA+++GYA+N + ++A++LF P +
Sbjct: 597 VRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDK 656
Query: 164 -----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
YI K + + V L+DMY++ G V+++ F R +D+V + MI G
Sbjct: 657 EGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITG---- 712
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-- 276
G +D L+ ++H + G E SD +
Sbjct: 713 -CIVCGRYDDALN-----------------------LLHEMQRRQG-EDGSDTFVDYEDD 747
Query: 277 AVCRYQPN-VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335
++PN VTL + G A A K + Y K + +V V + L+DMY
Sbjct: 748 GGVPFKPNSVTLMTVL------PGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMY 801
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE--------------------- 374
AKCG ++LA FD+ ++V+ + + + YG+HG GEE
Sbjct: 802 AKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRP 861
Query: 375 --------------------GWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
G LFH ++ HG+EPR HYA +VDLL R+G A++
Sbjct: 862 NEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYEL 921
Query: 414 IMNMPIEL-RLSVRRALLSAWKI 435
I MP L ++ +LL A +I
Sbjct: 922 INTMPSNLNKVDAWSSLLGACRI 944
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/428 (20%), Positives = 162/428 (37%), Gaps = 87/428 (20%)
Query: 14 PLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTE--WSA 71
P VLKA A+ L +G ++H +F G V L +++ + +A
Sbjct: 334 PAVLKAAAAVHDLCLGKQIHAHVFKFGH-------APPSSVAVANSLVNMYGKCGDLTAA 386
Query: 72 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 131
FD + + + + + C E E + M+ ++ S L+S+ C
Sbjct: 387 RQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHAC--- 443
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
+ V+L + Y + + R N L+ MYA+ G V+
Sbjct: 444 ----------------SHVRGGVRLGKQVHAYTLRNGDLR--TYTNNALVTMYARLGRVN 485
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHE-------WSAFGSFDGLLSNEENEYGTALDCS 244
A F KD+V + +I ++ + DG+ + CS
Sbjct: 486 DAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACS 545
Query: 245 CDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCRYQP-------------NVTL 287
LE L G+ +H + ++ G +E+ L+ + C+ QP V +
Sbjct: 546 -QLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCK-QPKKGRLVFDGVVRRTVAV 603
Query: 288 WNAMISGYAKNGYAEEAVKLF----------PKWMDY---------------------YI 316
WNA+++GYA+N + ++A++LF P + YI
Sbjct: 604 WNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYI 663
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
K + + V L+DMY++ G V+++ F R +D+V + M G + G ++
Sbjct: 664 VKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDAL 723
Query: 377 VLFHHIRK 384
L H +++
Sbjct: 724 NLLHEMQR 731
>gi|125555425|gb|EAZ01031.1| hypothetical protein OsI_23065 [Oryza sativa Indica Group]
Length = 671
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 171/396 (43%), Gaps = 84/396 (21%)
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAV--------------CRYQPNVTLRNAMIS 142
E L GK VHG ++K+G E++ L +L A+ CR + + R ++++
Sbjct: 223 ELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRHDAFSRTSLLT 282
Query: 143 GYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRN 172
YA+NG EAV++F K + Y K+ +R
Sbjct: 283 AYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRL 342
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF------ 226
+ ++ ++ +Y KCG + + + F+ +KD + +A++ Y ++ S F
Sbjct: 343 DTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMV 402
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
GL S+ CS L G +H ++KLG++ +
Sbjct: 403 RKGLESSIFCITSVLRACSAT-SSLSCGWQIHSRVVKLGVD----------------DDT 445
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLIDMYAKCGSVDLA 344
++ NA+++ YAK G + A+K+F + RN I++ LI +++ G+ A
Sbjct: 446 SVENALVTMYAKCGVVQVALKIF----------NSTRNRGIISWNALITSFSQHGNEVAA 495
Query: 345 PMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIR-KHGIEPRHQHYARVVD 399
FD ++ V VG GL EG F ++ K+ +EP+ +HY +VD
Sbjct: 496 IQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVD 555
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L ARAG + A KFI MP + V ALL++ ++
Sbjct: 556 LFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRV 591
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 58/313 (18%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
R +PN A+++G A+ A ++ + + + E V L+DMYAKCG
Sbjct: 100 RDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES-----VAGTLVDMYAKCG 154
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE---NEYGTALDCSC 245
V + F T + V+ ++MI H S + +L + + T SC
Sbjct: 155 RVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSC 214
Query: 246 DL------EFLEQGKIVHGFMIKLGLELESDLLISLTAV--------------CRYQPNV 285
L E L GK VHG ++K+G E++ L +L A+ CR + +
Sbjct: 215 ILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRHDA 274
Query: 286 TLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 315
++++ YA+NG EAV++F K + Y
Sbjct: 275 FSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCY 334
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
K+ +R + ++ ++ +Y KCG + + + F+ +KD + +A+ Y + L +E
Sbjct: 335 ALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEA 394
Query: 376 WVLFHHIRKHGIE 388
F + + G+E
Sbjct: 395 LFFFREMVRKGLE 407
>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
lyrata]
gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
lyrata]
Length = 1359
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 113/467 (24%), Positives = 176/467 (37%), Gaps = 134/467 (28%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAV---------------CRYQPNVTLRNAMISGYAK 146
G+ +H ++K+GL+ + + SL ++ C + + NAM++ Y +
Sbjct: 790 GRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVE 849
Query: 147 NGYAEEAVKLF---------PKWMD-------------YYIGKSEY--------RNNVIV 176
N A++LF P Y GKS + ++ +
Sbjct: 850 NDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAI 909
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHEWSAFGSFDG 228
+ L+ +Y+KCG A + F +KD+V ++I G L + D
Sbjct: 910 ESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 969
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------ 279
L + + + ++ LE L G VHG MIK G L LI L + C
Sbjct: 970 SLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMA 1029
Query: 280 -----RYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------- 316
+P N+ WN+MIS Y++N E +++LF + I
Sbjct: 1030 LKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISST 1089
Query: 317 -----GKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
GKS + ++ + LIDMY KCG A F + K ++ + M
Sbjct: 1090 ASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMI 1149
Query: 364 VGYGLHGLGEEGWVLFHHIRK------------------------------------HGI 387
GYG HG LF ++K +GI
Sbjct: 1150 YGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGI 1209
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
EP+ +HYA +VDLL RAG A+ FI MP E S+ LLSA +
Sbjct: 1210 EPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASR 1256
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 93/436 (21%), Positives = 165/436 (37%), Gaps = 120/436 (27%)
Query: 57 FLDLYHLWSRTE-----WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK 111
+L HL+++ + W++ +F LL CS L L GK +HG +I
Sbjct: 541 YLQALHLYTKHDGSSPLWTSVFTFPSLLKA----------CS-SLTNLSSGKTIHGSIIV 589
Query: 112 LGLELE---SDLLISLTAVCRY-----------------QPNVTLRNAMISGYAKNGYAE 151
LG + + L+++ C + +VT+ N+MI GY K +
Sbjct: 590 LGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFRRFK 649
Query: 152 EAVKLFPKWMDYYIGKSEYRNNVIVN--------------------------------TV 179
E V F + + + + +++V+ T
Sbjct: 650 EGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFLKTA 709
Query: 180 LIDMYAKCG-SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNE--- 233
LIDMY K G S D +F + +VV+ + MIVG+G E S+ + SN
Sbjct: 710 LIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKL 769
Query: 234 -ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-------------- 278
+ AL E G+ +H ++K+GL+ + + SL ++
Sbjct: 770 VSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVF 829
Query: 279 -CRYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMD-------------YY 315
C + +WNAM++ Y +N A++LF P Y
Sbjct: 830 SCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYD 889
Query: 316 IGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
GKS + ++ + + L+ +Y+KCG A + F +KD+V ++ G
Sbjct: 890 YGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLC 949
Query: 368 LHGLGEEGWVLFHHIR 383
+G +E +F ++
Sbjct: 950 KNGKFKEALKVFGDMK 965
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 34/245 (13%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
V+ AC L +L G +VHG + G V +F G +DLY E A F
Sbjct: 981 VINACAGLEALSFGLQVHGSMIKTG-QVLNVFVG-----SSLIDLYSKCGLPEM-ALKVF 1033
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
+ + + + C E + M+ G+ +S +S+T+V ++
Sbjct: 1034 TSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDS---VSITSVL---VAIS 1087
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+++ G + +GY + I + N LIDMY KCG A
Sbjct: 1088 STASLLKGKSLHGYT----------LRLGIPSDTHLKN-----ALIDMYVKCGFSKYAEN 1132
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGT---ALDCSCDLE-F 249
F + K ++ + MI GYG H +A FD L E +L +C+ F
Sbjct: 1133 IFKKMQHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGF 1192
Query: 250 LEQGK 254
+E+GK
Sbjct: 1193 VEEGK 1197
>gi|297813827|ref|XP_002874797.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320634|gb|EFH51056.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 748
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 137/568 (24%), Positives = 216/568 (38%), Gaps = 166/568 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCY---------------------L 46
P+ T P +LKAC +L L G +H ++ GF +
Sbjct: 44 PDTFTFPSLLKACTSLQLLSFGLSIHQKVLVNGFSSDSYISSSLVNLYAKFGLLGHARKV 103
Query: 47 FDGLFDRTIV-FLDLYHLWSRTEWSAFGSFDGLLSNEENEYG------TALDCSCDLEFL 99
FD + DR +V + + +SR FG L+ E G T L+ + +
Sbjct: 104 FDEMRDRDVVHWTAMIGCYSRA--GIFGEACSLV-KEMRFQGIKPSPVTFLEMLSGISEI 160
Query: 100 EQGKIVHGFMIKLGLELESDLLIS-LTAVCRY--------------QPNVTLRNAMISGY 144
Q + +H F + G E + ++ S L C+ Q ++ N MISG+
Sbjct: 161 TQLQCLHAFALVYGFECDIAVMNSMLNLYCKCDRVGDAKELFDQMEQRDMVSWNTMISGF 220
Query: 145 AKNGYAEEAVKLFPKWMD------------------------------YYIGKSEYRNNV 174
A E +KL + D I + + ++
Sbjct: 221 AFVANMSEILKLLYRMRDDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVGTGFDGDM 280
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLL- 230
+ T LI MY KCG + + + DKDVV + MI G G E A F +L
Sbjct: 281 HLRTALITMYLKCGEEEASYRVLETIPDKDVVCWTVMISGLMRLGRAE-KALIVFSEMLH 339
Query: 231 --SNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLL---ISLTAVCRY--- 281
S+ +E ++ SC L + G VHG++++ G L++ L I++ A C +
Sbjct: 340 SGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRQGYTLDTPALNSFITMYAKCGHLDK 399
Query: 282 ---------QPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------- 309
+ ++ WNA+ISG+A++G +A+ LF
Sbjct: 400 SLILFERMNERDLVSWNAIISGHAQHGDLCKALLLFEEMKFKTVQQVDSLTVVSLLQACS 459
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
+ + + +S R +V+T L+DMY+KCG ++ A F+ KDVV
Sbjct: 460 SAGALPVGRMIHCIVIRSFIRPCTLVDTALVDMYSKCGYLEAAQRCFNSITWKDVVSWGT 519
Query: 362 MTVGYGLHGLG-----------------------------------EEGWVLFHH-IRKH 385
+ GYG HG G ++G +F +R
Sbjct: 520 LIAGYGFHGKGDIALEIYSEFLHFGMKPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDF 579
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKF 413
G+EP H+H A VVDLL RA AFKF
Sbjct: 580 GVEPNHEHLACVVDLLCRAKRVEDAFKF 607
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 100/435 (22%), Positives = 175/435 (40%), Gaps = 105/435 (24%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLRNAMISG 143
++ G +V+G ++ G E + +++I L C + + N+MI+G
Sbjct: 118 IKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITG 177
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 203
Y NG + A KLF + + NVI T +I Y K G + A + F+R +K
Sbjct: 178 YGNNGRVDIARKLFDRMEE---------RNVISWTSMIQGYVKAGDLLEARVLFERMPEK 228
Query: 204 DVVMRSAMIVGYGL--HEWSAFGSFDGLLSNEENEYGTALDCSCD----------LEFLE 251
D+ M+ Y + +A F+ + ++ + + C + ++
Sbjct: 229 DLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQ 288
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRY-QPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ + MI G D+ + + + + N+ W+ MI GYAK G+ ++KL+
Sbjct: 289 ERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKT 348
Query: 311 WMDY-------------------------------YIGKSEYRNNVIVNTVLIDMYAKCG 339
+ + ++G S + N +V T LIDMYAKCG
Sbjct: 349 FKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVV-TSLIDMYAKCG 407
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--------------- 384
+++ A F+ KD+ S + + HGL E+ LF ++K
Sbjct: 408 NIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLT 467
Query: 385 ---------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
+GI+P +HYA +VD+L RAG A I +MP+
Sbjct: 468 ACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNA 527
Query: 424 SVRRALLSAWKIPMQ 438
+V ALLSA ++ +
Sbjct: 528 TVWGALLSACRVHLN 542
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 34/210 (16%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEEN-- 235
L+ +Y+K G+V A FD T + + + +A+I G+ + +AF F + + EN
Sbjct: 42 LLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFF--IKMHRENIV 99
Query: 236 ----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC--------- 279
+ L L ++ G +V+G ++ G E + +++I L C
Sbjct: 100 PLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQM 159
Query: 280 ---RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+ + WN+MI+GY NG + A KLF + + NVI T +I Y
Sbjct: 160 FDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEE---------RNVISWTSMIQGYV 210
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
K G + A + F+R +KD+ M Y
Sbjct: 211 KAGDLLEARVLFERMPEKDLASWKVMVSAY 240
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 144/358 (40%), Gaps = 89/358 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFG 224
K+ Y + T L+ Y KC ++ A D +K+VV +AMI Y H A
Sbjct: 79 KTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALS 138
Query: 225 SFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLT 276
F ++ ++ E + T L L GK +HG ++K + + S LL
Sbjct: 139 VFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYA 198
Query: 277 AV-----------CRYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-- 314
C + +V A+I+GYA+ G EEA+++F P ++ Y
Sbjct: 199 KAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYAS 258
Query: 315 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
++ + E ++ LIDMY+KCG++ A FD ++
Sbjct: 259 LLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERT 318
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------------------- 383
+ +AM VGY HGLG E LF +R
Sbjct: 319 AISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIY 378
Query: 384 ------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++GI+P +HY +VD+L RAG + AF+FI MP + V +LL A ++
Sbjct: 379 DGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRV 436
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 73/276 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFL-VCYL--------------------FDGLFDRT 54
+L AC+ +L G RVH + +L YL D + ++
Sbjct: 57 LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116
Query: 55 IV-FLDLYHLWSRTEWS--AFGSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHG 107
+V + + +S+T S A F ++ ++ E + T L L GK +HG
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHG 176
Query: 108 FMIKLGLE----LESDLLISLTAV-----------CRYQPNVTLRNAMISGYAKNGYAEE 152
++K + + S LL C + +V A+I+GYA+ G EE
Sbjct: 177 LIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 236
Query: 153 AVKLF---------PKWMDY---------------------YIGKSEYRNNVIVNTVLID 182
A+++F P ++ Y ++ + E ++ LID
Sbjct: 237 ALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 296
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
MY+KCG++ A FD ++ + +AM+VGY H
Sbjct: 297 MYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKH 332
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 163/401 (40%), Gaps = 111/401 (27%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
L++GK +HG ++K+G ++ +L SL +S Y+K G E K+F
Sbjct: 130 LQEGKQIHGLVLKIGFGVDKFVLSSL----------------VSMYSKCGEIELCRKVFD 173
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ D +V+ LID YA+CG ++LA F+ +KD + +I
Sbjct: 174 RMED---------KDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILI------ 218
Query: 219 EWSAFGSFDGLLSNEENEYGT-ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
DGL + + E D + +++G+M +L +
Sbjct: 219 --------DGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMP- 269
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------------- 309
+ ++ WN+MI+GY +N +A+KLF
Sbjct: 270 ----ERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLG 325
Query: 310 --KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
+W+ YI KS ++ + ++ T+LI+MY+KCGSV A F K + +++ VG G
Sbjct: 326 TGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLG 385
Query: 368 LHGLGEEGWVLFHHIRK------------------------------------HGIEPRH 391
+HGL E+ LF + + +GI+P
Sbjct: 386 MHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSI 445
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+HY ++D+L RAG+ A I MPI+ + +LLS
Sbjct: 446 EHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSG 486
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 33/172 (19%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS---------------------- 319
+P + WN +I Y +N + +A+ LF K + ++ S
Sbjct: 77 EPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVPDSFTLPCVLKGCARLGALQEGKQI 136
Query: 320 -------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ + V + L+ MY+KCG ++L FDR DKDVV +++ GY G
Sbjct: 137 HGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEI 196
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
E +F + E + ++D L+++G A MPI +S
Sbjct: 197 ELALEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVS 244
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 106/424 (25%), Positives = 169/424 (39%), Gaps = 107/424 (25%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAV---CR-------------YQPNVTLRNAMIS 142
L Q K +H ++ GL + LL L CR P + N MI
Sbjct: 68 LTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQ 127
Query: 143 GYAKNGYAEEAVKLF--------PKWMDYY-------------------------IGKSE 169
Y+K ++E++ LF P D Y + K
Sbjct: 128 AYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDG 187
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
Y +++ V L++MY+ + A FD +DV+ ++++ GY + A FD
Sbjct: 188 YESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFD 247
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
+ + + + G + H F + L+ +D+L +PN +
Sbjct: 248 MMPGRNDVSWAVMV----------AGYVGHRFYNE-ALQCFNDMLCHDEV----KPNEAV 292
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+++S A G ++ KW+ YI K+ + ++T LIDMYAKCG +D A
Sbjct: 293 LVSILSACAHLGALDQG-----KWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRV 347
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLG----------------------------------- 372
FD +D++ ++M G +HGLG
Sbjct: 348 FDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLV 407
Query: 373 EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
EEG +FH I GI P+ +HY ++DLL RAG AF+ I +MP+E + RALLS
Sbjct: 408 EEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLS 467
Query: 432 AWKI 435
A +I
Sbjct: 468 ACRI 471
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 139/359 (38%), Gaps = 109/359 (30%)
Query: 127 VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186
V Y P+ +I G A+ G +E ++ + K + ++V V L++MY+K
Sbjct: 108 VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLAL-----KIGFGSDVFVQGSLVNMYSK 162
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCD 246
CG +D A FD +DKDVV+ +++I G L W+A N Y + D
Sbjct: 163 CGEIDCARKVFDGMIDKDVVLWNSLIDG-NLVSWNAM----------INGYMKSGDFDSA 211
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK 306
LE Q I ++ WN MI+GY NG +AVK
Sbjct: 212 LELFYQMPIW---------------------------DLVTWNLMIAGYELNGQFMDAVK 244
Query: 307 LF------------------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+F +W+ Y+ K+ + + I+ T LI+MYA
Sbjct: 245 MFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYA 304
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG---------- 386
KCG ++ A F K V +A+ VG G+HG+ LF + K G
Sbjct: 305 KCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIG 364
Query: 387 --------------------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
IEP +HY +VD+L RAG+ A I NMPI
Sbjct: 365 VLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPI 423
>gi|115462159|ref|NP_001054679.1| Os05g0153400 [Oryza sativa Japonica Group]
gi|52353594|gb|AAU44160.1| unknown protein [Oryza sativa Japonica Group]
gi|54287570|gb|AAV31314.1| unknown protein [Oryza sativa Japonica Group]
gi|113578230|dbj|BAF16593.1| Os05g0153400 [Oryza sativa Japonica Group]
gi|215766042|dbj|BAG98270.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196115|gb|EEC78542.1| hypothetical protein OsI_18502 [Oryza sativa Indica Group]
gi|222630240|gb|EEE62372.1| hypothetical protein OsJ_17161 [Oryza sativa Japonica Group]
Length = 507
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 148/335 (44%), Gaps = 57/335 (17%)
Query: 130 YQPNVTL-RNAMISGYAKNGYAEEAVKLF-----------PKWMDYYIGKSEYRNNV--I 175
YQ ++ L R +ISG NGY+ L K + + K +V +
Sbjct: 100 YQDSLALLRRMVISGVVPNGYSLSGALLACAGIGPGALAAGKEIHARVVKMSLHGSVDAV 159
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG---YGLHEWSAFGSFDGLLSN 232
V ++DMY +CG +D A F L +D+V ++M+ G G E A G F ++S+
Sbjct: 160 VENGVLDMYTRCGKIDYARKLFGVMLVRDIVAWNSMMAGCLRSGQAE-EALGLFSSMVSS 218
Query: 233 EEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288
+ + ++D +L L+QG H +I+ G + +V +
Sbjct: 219 GVDADGFSFAISVDACGELALLKQGMQAHARVIRGG----------------FDSDVVVR 262
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
N+++ YAK G + A +F + ++ ++ T +I Y K G V A F
Sbjct: 263 NSLVDMYAKCGCVDSAGLVF---------RDALSSDAVLWTTMISAYGKFGRVHDAICMF 313
Query: 349 DRT----LDKDVVMRSAMTVGYGLHGLGEEGW----VLFHHIRKHGIEPRHQHYARVVDL 400
DR + +D V A+ GL +EGW ++FH ++P +HY + DL
Sbjct: 314 DRMSQLGIKRDGVAYLAVLSACSHSGLVKEGWNYFKLMFHGQNSVKMQP--EHYGCMADL 371
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L R+GY A FI NMP E ++ ALL++ +I
Sbjct: 372 LCRSGYLEEALDFITNMPFESSIAAWSALLNSCRI 406
>gi|297798028|ref|XP_002866898.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312734|gb|EFH43157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 742
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 129/568 (22%), Positives = 216/568 (38%), Gaps = 175/568 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFS--------------------LG 40
M ++ +P+ T P+V+ AC L +G VHG + G
Sbjct: 121 MLLSGQSPDHFTAPMVVSACAELLWFDVGSFVHGFVLKHGGFERNTAVGASFVYFYSKCG 180
Query: 41 FL--VCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFG---SFDGLLSNEENEYGTALDC 92
FL C +FD + +R +V H+ +R A G + S+ + L+C
Sbjct: 181 FLQDACLVFDEMPERDVVAWTAIISGHVQNRESERALGYLCKMHTVGSDVDKPNPRTLEC 240
Query: 93 ---SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG 148
+C +L L++G+ +HGF +K GL NV +++++ S Y+K+G
Sbjct: 241 GFQACSNLGALKEGRCLHGFAVKNGLA---------------SSNV-VQSSIFSLYSKSG 284
Query: 149 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA-PMFFD---RTLDKD 204
EA F + D ++ T +I + G+V+ + MF++ + + D
Sbjct: 285 NPAEAYLSFRELGD---------QDMFSWTSIIASLVRSGNVEESFDMFWEMQNKGMQPD 335
Query: 205 VVMRSAMIVGYG----LHEWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQ------ 252
++ S +I G + E AF F S + + L C EFL
Sbjct: 336 GIVISCLISELGKKMLVPEGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFEFLSVAEKLFC 395
Query: 253 -----------------------GKIVHGFMIKLGLELE--------------SDLLISL 275
GK +H +++K L+L DL ++
Sbjct: 396 KISEEGNTEAWNTMLKGYGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAW 455
Query: 276 TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---------------------- 313
C N+ WNAMI+ Y ++A+ LF + +
Sbjct: 456 RMFCEADTNIVTWNAMIASYVYCEQPDKAIALFDRMVSENFKPSSITLVTLLMACANTGS 515
Query: 314 --------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
YI ++E+ N+ ++T LIDMYAKCG ++ + FD KD V + M G
Sbjct: 516 LERGQMIHRYIIETEHEMNLSLSTALIDMYAKCGHLEKSRELFDAASQKDAVCWNVMISG 575
Query: 366 YGLHG-----------------------------------LGEEGWVLFHHIRKHGIEPR 390
YG+HG L E G LF + ++ ++P
Sbjct: 576 YGMHGHVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEHGKNLFLKMHQYDVKPN 635
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMP 418
+HY+ +VDLL+R+G A +M+MP
Sbjct: 636 LKHYSCLVDLLSRSGNLQEAETTVMSMP 663
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 115/288 (39%), Gaps = 73/288 (25%)
Query: 102 GKIVHGFMIKLGLELE--------------SDLLISLTAVCRYQPNVTLRNAMISGYAKN 147
GK +H +++K L+L DL ++ C N+ NAMI+ Y
Sbjct: 419 GKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNIVTWNAMIASYVYC 478
Query: 148 GYAEEAVKLFPKWMD------------------------------YYIGKSEYRNNVIVN 177
++A+ LF + + YI ++E+ N+ ++
Sbjct: 479 EQPDKAIALFDRMVSENFKPSSITLVTLLMACANTGSLERGQMIHRYIIETEHEMNLSLS 538
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEEN 235
T LIDMYAKCG ++ + FD KD V + MI GYG+H SA FD + ++
Sbjct: 539 TALIDMYAKCGHLEKSRELFDAASQKDAVCWNVMISGYGMHGHVESAIALFDQMEESDVK 598
Query: 236 EYGT---ALDCSCD-LEFLEQGK----IVHGFMIKLGLELESDLLISLTAVCRYQ----- 282
G AL +C +E GK +H + +K L+ S L+ L+ Q
Sbjct: 599 PTGPTFLALLSACTHAGLVEHGKNLFLKMHQYDVKPNLKHYSCLVDLLSRSGNLQEAETT 658
Query: 283 -------PNVTLWNAMISGYAKNG-------YAEEAVKLFPKWMDYYI 316
P+ +W ++S +G A+ AV P+ YYI
Sbjct: 659 VMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMADRAVASDPQNDGYYI 706
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 116/280 (41%), Gaps = 60/280 (21%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA 222
G SE N+ V + LI YA G +L+ FD +DV + +++I + G + S
Sbjct: 59 GNSE---NIFVASKLISSYASYGKPNLSSRVFDLVTRRDVFLWNSIIKAHFSNGDYARSL 115
Query: 223 FGSFDGLLSNEENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
F LLS + ++ TA + +L + + G VHGF++K G E + + + V
Sbjct: 116 GFFFSMLLSGQSPDHFTAPMVVSACAELLWFDVGSFVHGFVLKHG-GFERNTAVGASFVY 174
Query: 280 RY-----------------QPNVTLWNAMISGYAKNGYAEEAV--------------KLF 308
Y + +V W A+ISG+ +N +E A+ K
Sbjct: 175 FYSKCGFLQDACLVFDEMPERDVVAWTAIISGHVQNRESERALGYLCKMHTVGSDVDKPN 234
Query: 309 PKWMDY-------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
P+ ++ + K+ ++ +V + + +Y+K G+ A + F
Sbjct: 235 PRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSNVVQSSIFSLYSKSGNPAEAYLSFR 294
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
D+D+ +++ G EE + +F ++ G++P
Sbjct: 295 ELGDQDMFSWTSIIASLVRSGNVEESFDMFWEMQNKGMQP 334
>gi|297745358|emb|CBI40438.3| unnamed protein product [Vitis vinifera]
Length = 1079
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 183/453 (40%), Gaps = 113/453 (24%)
Query: 89 ALDCSCDLEFLEQGKIVHGFMIKLG----LELESDLL------ISLTAVCRYQPNVTLRN 138
AL S L FL GK +H +IKLG L L++ +L VC+ + L+N
Sbjct: 79 ALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKN 138
Query: 139 ---------AMISGYAK--------------------------NGYAEEAVKL----FPK 159
++ G K NG +++L +
Sbjct: 139 VVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICR 198
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH- 218
+ +I KS + +N V + L+D YAK G VD A FD +D+V+ + M+ Y L+
Sbjct: 199 QLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNG 258
Query: 219 -EWSAFGSFDGLLSNE----ENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGLELES--- 269
+ AFG F L+ E +N T++ SC L GK VHG +I+L +L+
Sbjct: 259 VQGKAFGVFK-LMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVA 317
Query: 270 -----------DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 318
LL + V Y P+ +++S E V++ Y+ +
Sbjct: 318 SALHGDGKEAMRLLQEMIRVYTY-PDELALASILSSCGNLSATSEVVQVHA-----YVVE 371
Query: 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG--- 375
+ + + + L+ Y+KCGS+ A F + D++ +++ Y HGL +EG
Sbjct: 372 NGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEV 431
Query: 376 --WVLFHHIR-------------KHG------------------IEPRHQHYARVVDLLA 402
+LF ++R HG I P +HY ++DLL
Sbjct: 432 FEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLG 491
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG+ + A + +MP+E R A L A K+
Sbjct: 492 RAGFLDEAINLLTSMPVEPRSDTLGAFLGACKV 524
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 52/265 (19%)
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLG----LELESDLL------ISLTAVCRY-----QPN 284
AL S L FL GK +H +IKLG L L++ +L VC+ N
Sbjct: 79 ALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKN 138
Query: 285 VTLWNAMISGYAK------------------------------NGYAEEAVKL----FPK 310
V WN +I G + NG +++L +
Sbjct: 139 VVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICR 198
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ +I KS + +N V + L+D YAK G VD A FD +D+V+ + M Y L+G
Sbjct: 199 QLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNG 258
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVD---LLARAGYSNHAFKFIMNMPIELRLSVRR 427
+ + + +F +R G++ + + +++ +L G I+ + +L + V
Sbjct: 259 VQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVAS 318
Query: 428 ALLSAWKIPMQQWENMLQTIRGIDE 452
AL K M+ + M++ DE
Sbjct: 319 ALHGDGKEAMRLLQEMIRVYTYPDE 343
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 116/472 (24%), Positives = 175/472 (37%), Gaps = 167/472 (35%)
Query: 79 LSNEENEYGTA--LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR------- 129
LS+E N T L ++E L Q +HG M+K GL L+ L A C
Sbjct: 12 LSSESNAAQTLHLLQRCSNMEELRQ---IHGQMLKTGLILDEIPASKLLAFCASPNSGSL 68
Query: 130 ----------YQPNVTLRNAMISGYAKNGYAEEAVKL---------------FP------ 158
++PN + N MI GY+ + EEA+ L FP
Sbjct: 69 AYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKAC 128
Query: 159 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 209
+ + +I K + + + L+++Y+K G + A + FD+ +D V +
Sbjct: 129 SSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWN 188
Query: 210 AMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
+MI DG E I++ E+ +
Sbjct: 189 SMI--------------DGYTKCGE--------------------------IEMAYEIFN 208
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+ + N+ W +MISG G +EA+ LF
Sbjct: 209 HM---------PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQA 259
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
KW+ YI K E + I+ VLIDMYAKCG ++ A F + +K V +
Sbjct: 260 CADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 319
Query: 360 SAMTVGYGLHGLGEEG--W---------------------------------VLFHHI-R 383
+AM GY +HG G E W +LF + R
Sbjct: 320 TAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMER 379
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HG +P +HY +VDLL RAG A + I NMP++ ++ ALL+A I
Sbjct: 380 IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHI 431
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 135/354 (38%), Gaps = 88/354 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V N T P +LKAC ++ + ++H I +GF T L++Y
Sbjct: 114 VPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGF------GSEIYTTNSLLNVYSKSG 167
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
+ SA FD + + + + +D G+ +E+ ++ +
Sbjct: 168 DIK-SARLLFDQVDQRDTVSWNSMID---------------GYTKCGEIEMAYEIFNHMP 211
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP--------------------------- 158
+ N+ +MISG G +EA+ LF
Sbjct: 212 -----ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266
Query: 159 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
KW+ YI K E + I+ VLIDMYAKCG ++ A F + +K V + +AMI GY
Sbjct: 267 DQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326
Query: 216 GLH-------EWSAFGSFDGLLSNEENEYGTALDCS-------CDLEFLEQGKIVHGF-- 259
+H EW G+ N+ G CS L F E + +HGF
Sbjct: 327 AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF-ESMERIHGFKP 385
Query: 260 -------MIKL----GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
M+ L GL E++ LI V +PN +W A+++ +G E
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPV---KPNAAIWGALLNACHIHGNLE 436
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 100/421 (23%), Positives = 165/421 (39%), Gaps = 106/421 (25%)
Query: 99 LEQGKIVHGFMIKLGL---ELESDLLISLTAVC------------RYQPNVTLRNAMISG 143
+++G+ VH +++ G E S L+ C QP + L +I
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRA 166
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
Y + E+A++LF K M +I KS +
Sbjct: 167 YVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
V++ LI Y +CGS+D A FF T K++V+ + MI H+ S E
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMI-----HQ-----------SVE 270
Query: 234 EN--EYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
N E G L S D + + ++ GF ++G E+ PN +
Sbjct: 271 HNNLELGKQLFQSMPDRDVVSWNSMIGGF-ARIGQYQEALTWFHEMEFSGVSPNALTLLS 329
Query: 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+S A +G + W+ Y+ K++ + +++ LIDMY+KCG +D A F+
Sbjct: 330 TLSACASHGALDTGA-----WIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE 384
Query: 351 TLDKDVVMRSAMTVGYGLHGLGE-----------------------------------EG 375
+ +D+ +++ G +HG GE +G
Sbjct: 385 STRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQG 444
Query: 376 WVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
W F + K G+ P+ +HY +VDLL R G A+ IM MP+E + A LSA +
Sbjct: 445 WWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACR 504
Query: 435 I 435
+
Sbjct: 505 V 505
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 102/450 (22%), Positives = 174/450 (38%), Gaps = 119/450 (26%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QP 132
L L ++ GK +H IK G++ D++I + VC Y +
Sbjct: 101 LKACASLSIVKHGKALHAESIKNGVDF--DVMIGTSLVCMYAKCGNVVDSRKVFDYMPER 158
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
N NAMI GY NG ++ AV LF K + +ID +A+ G +
Sbjct: 159 NAVTWNAMICGYLGNGDSKSAVLLFEKM---------SIRTAVTWIEMIDGFARSGDTET 209
Query: 193 APMFFDRTLD--KDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLE 248
A FFD ++VV + M+ GY + +A F+G+
Sbjct: 210 ARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRN--------------- 254
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
F ++ G+ K ++ + + N+ WN++ISGYA+NG++EEA++ F
Sbjct: 255 FFAWSSMISGYCKKGNVKEARSIFDRIPV-----RNLVNWNSLISGYAQNGFSEEALEAF 309
Query: 309 PKW------------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKC 338
K + + + + N V L+DMYAKC
Sbjct: 310 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 369
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE------------------------ 374
G + A + F+ ++ ++M G+ +HG +E
Sbjct: 370 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 429
Query: 375 -----------GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
G +F + K+G+ +HY ++DLL RAG A+ I MP++
Sbjct: 430 SACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPND 489
Query: 424 SVRRALLSAWKI--PMQQWENMLQTIRGID 451
V ALL A ++ M+ + +++ I +D
Sbjct: 490 VVWGALLGACRVHLDMEMADRVVEEIVKVD 519
>gi|224084249|ref|XP_002307242.1| predicted protein [Populus trichocarpa]
gi|222856691|gb|EEE94238.1| predicted protein [Populus trichocarpa]
Length = 561
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 131/563 (23%), Positives = 213/563 (37%), Gaps = 170/563 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M + PNG T L+AC L MG +HGQ GF F+ +F +T L +
Sbjct: 1 MGTQGLTPNGSTFSSSLQACCLLEDWFMGSLIHGQSVKHGF-----FNDVFVQT-SLLGM 54
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELE 117
Y E SA F ++ + + + + + E LE+G ++ G M++ G+ E
Sbjct: 55 YSNCGDLE-SANKVFGCVVQKDAVLWNSMIFGNLKNEKLEEGVLLFGKMVRHGIVPTEFT 113
Query: 118 SDLLISLTAV---CRY-------------------------------------------- 130
++++ CR+
Sbjct: 114 YSMILNACGKLGDCRWGQVIHAQVIVLNVLADLPLQNALLDMYCSCGDTETGFNVFNKIE 173
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK-SEY------------------- 170
P++ N+MISGYA+NG +A+ LF + + ++ K EY
Sbjct: 174 NPDLVSWNSMISGYAENGEGADAMNLFLQLVGVFLPKPDEYTFAAVISATSAFSATCYGK 233
Query: 171 -----------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--- 216
+V + T L+ MY K G ++ A F+ KDVV+ + MI+G+
Sbjct: 234 PLHAQVLKVGSERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVLWTEMIMGHSRLG 293
Query: 217 ------------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 264
HE SF AL DL L QG+++H +K G
Sbjct: 294 GGESAIKLFSMMCHEGYKIDSF---------ALSGALSACADLATLNQGEMIHTQTVKRG 344
Query: 265 LELESDLLISLTAVCR---------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+ E + SL + P++ WN+M+ GY+++G AEEA+ +F
Sbjct: 345 CDAEISVCGSLVHMYAKNGDLHAARSIFSQVSNPDLKCWNSMLGGYSQHGMAEEAMIIFA 404
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
K ++VN D V ++
Sbjct: 405 K--------------ILVNGQ----------------------RPDQVTFLSLLSACSHS 428
Query: 370 GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL-RLSVRRA 428
GL EEG +L+ HI+K+ + P +HY+ +V LL+RAG + A + I+ L + R
Sbjct: 429 GLVEEGKLLWSHIKKNDVIPGPKHYSCMVSLLSRAGLLDEAEELIIKSTYSKDHLELWRT 488
Query: 429 LLSA------WKIPMQQWENMLQ 445
LLS+ KI ++ E +LQ
Sbjct: 489 LLSSCVNKRNLKIGVRAAEEILQ 511
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 114/434 (26%), Positives = 182/434 (41%), Gaps = 97/434 (22%)
Query: 28 MGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG 87
+G ++HGQIF G+ YLF G L ++++T G +++ +
Sbjct: 156 LGRQIHGQIFKFGYQ-SYLFVGS--------PLVDMYAKT---------GFINDANRIFE 197
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--NVTLRNAMISGYA 145
E E+ +V+ MI GL L ++ + P + +I+G
Sbjct: 198 ---------EIPEKNIVVYNTMIT-GL-LRCRFIVEAEQLFDNMPEKDSISWTTIITGLT 246
Query: 146 KNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVI 175
+NG +EAV F K + YI +++Y++N+
Sbjct: 247 QNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIF 306
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNE 233
V + L+DMY KC +V A F + K+V+ +AM+VGYG + +S A F + NE
Sbjct: 307 VGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNE 366
Query: 234 ----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+ G+ + +L LE+G HG + GL +C VT+ N
Sbjct: 367 IHPDDFTLGSVISSCANLASLEEGAQFHGQALASGL------------ICF----VTVSN 410
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
A+I+ Y K G E A +LF + + R+ V T L+ YA+ G + F+
Sbjct: 411 ALITLYGKCGSLEHAHQLFHEM--------KIRDEVSW-TALVSGYAQFGKANETISLFE 461
Query: 350 RTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFH-HIRKHGIEPRHQHYARVVDLLARA 404
L +V VG GL E+G+ F +++H I P HY ++DLL+RA
Sbjct: 462 TMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRA 521
Query: 405 GYSNHAFKFIMNMP 418
G A FI MP
Sbjct: 522 GRLEEAKNFINQMP 535
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 161/401 (40%), Gaps = 78/401 (19%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
DG ++ + T L S + F++ G+ +HG + K G YQ +
Sbjct: 131 DGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFG----------------YQSYLF 174
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+ + ++ YAK G+ +A ++F + + N++V +I +C + A
Sbjct: 175 VGSPLVDMYAKTGFINDANRIFEEIPE---------KNIVVYNTMITGLLRCRFIVEAEQ 225
Query: 196 FFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL----LSNEENEYGTALDCSCDLE 248
FD +KD + + +I G GL + A F + ++ +G+ L
Sbjct: 226 LFDNMPEKDSISWTTIITGLTQNGLFK-EAVDKFKEMGIEGFCMDQFTFGSVLTACGGFL 284
Query: 249 FLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR------------YQPNVTLWNAMIS 293
L++GK +H ++I+ + L+ + CR NV W AM+
Sbjct: 285 ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLV 344
Query: 294 GYAKNGYAEEAVKLFPKWM-------DYYIGK--------------SEYRNN-------- 324
GY +NGY+EEAV++F D+ +G +++
Sbjct: 345 GYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLIC 404
Query: 325 -VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
V V+ LI +Y KCGS++ A F +D V +A+ GY G E LF +
Sbjct: 405 FVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETML 464
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
HGI P + V+ +RAG + + M E R++
Sbjct: 465 AHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRIT 505
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 60/317 (18%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138
+S+ N Y AL C+ Q K +H +I+ +LT P L N
Sbjct: 1 MSSSSNYYTAALKFCCEARNRAQVKKLHCRIIR-----------TLT-----NPETFLYN 44
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
+I+ Y K G + A +F + N+ L+ Y+K G + FD
Sbjct: 45 NLINTYGKLGDLKNARNVFDHIP---------QPNLFSWNTLLSAYSKLGYLQDMQRVFD 95
Query: 199 RTLDKDVVMRSAMIVGY---GLHEWSA----FGSFDGLLSNEENEYGTALDCSCDLEFLE 251
+ DVV ++++ GY GL S DG ++ + T L S + F++
Sbjct: 96 SMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVD 155
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
G+ +HG + K G YQ + + + ++ YAK G+ +A ++F +
Sbjct: 156 LGRQIHGQIFKFG----------------YQSYLFVGSPLVDMYAKTGFINDANRIFEEI 199
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ N++V +I +C + A FD +KD + + + G +GL
Sbjct: 200 PE---------KNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGL 250
Query: 372 GEEGWVLFHHIRKHGIE 388
+E F ++ GIE
Sbjct: 251 FKEAVDKF---KEMGIE 264
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 33/211 (15%)
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 281
+S+ N Y AL C+ Q K +H +I+ E+ L +L
Sbjct: 1 MSSSSNYYTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNAR 60
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK-----SEYR-NNVIVN 328
QPN+ WN ++S Y+K GY ++ ++F ++ + S Y N +I
Sbjct: 61 NVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISE 120
Query: 329 TVLI-DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+V + +M K GSV+L + F S M + G + G + I K G
Sbjct: 121 SVRVYNMMLKDGSVNLNRITF-----------STMLILSSNRGFVDLGRQIHGQIFKFGY 169
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+ + +VD+ A+ G+ N A + +P
Sbjct: 170 QSYLFVGSPLVDMYAKTGFINDANRIFEEIP 200
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 142/351 (40%), Gaps = 90/351 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWM------DYYIGKS---------------EYRNNVI- 175
NA+I+ + +NG EE + LF + D + S E N +I
Sbjct: 448 NAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIK 507
Query: 176 --------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGS 225
V LIDMY KCG ++ A DR + +V +A+I G+ L H A
Sbjct: 508 SGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSF 567
Query: 226 FDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F +L + Y LD +L + GK +HG +IK LEL SD+ I+ T V Y
Sbjct: 568 FYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIK--LELHSDVYITSTLVDMY 625
Query: 282 Q---------------PN--VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324
PN WNAMI GYA++G EEA+ F + + R N
Sbjct: 626 SKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFER-----MQLENVRPN 680
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
++ A G +D +F+ AM YGL
Sbjct: 681 HATFVSILRACAHMGFIDKGLHYFN-----------AMLTEYGL---------------- 713
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP+ +HY+ ++D++ R+G + A K I MP E + R LLS KI
Sbjct: 714 ---EPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKI 761
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 109/458 (23%), Positives = 183/458 (39%), Gaps = 111/458 (24%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIVFLDLY 61
T +VLKAC L +G +VHG I +GF L Y D ++
Sbjct: 178 TFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEI 237
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
+ + WSA G + N+E+ G LE ++ M K+G+ + +
Sbjct: 238 PVKNWVCWSAI--IAGCVQNDEHILG--------LELFKE-------MQKVGIGVSQSIY 280
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
S+ C +G + A+K+ + + + K ++ +++ V T +
Sbjct: 281 ASVFRSC-------------AGLS-------ALKVGTQLHAHAL-KCDFGSDITVGTATL 319
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS-----NEE 234
DMYAKCGS+ A F+ + +A+IVG +E + A F LL NE
Sbjct: 320 DMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEI 379
Query: 235 NEYGTALDCSC---DLEFLEQGKIVHGFMIKLGLELESDLLISLT-------------AV 278
+ G C+ DL+ G+ +H +K L S++ ++ + A
Sbjct: 380 SLSGAFSACASIKGDLD----GRQLHSLSVK--STLRSNICVANSILDMYGKCEALSEAC 433
Query: 279 CRY----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------DYYIGKS--------- 319
C + + + WNA+I+ + +NG EE + LF + D + S
Sbjct: 434 CMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQ 493
Query: 320 ------EYRNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
E N +I V LIDMY KCG ++ A DR + +V +A+
Sbjct: 494 ALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIA 553
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
G+ L E+ F+ + K ++P + YA V+D A
Sbjct: 554 GFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACA 591
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 132/350 (37%), Gaps = 80/350 (22%)
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA 150
+CS D L+ GK H MI G + P+V + N ++ Y + +
Sbjct: 52 ECS-DYNSLKPGKQAHARMIVSG----------------FIPDVYISNCLMKMYLRCSHL 94
Query: 151 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
A K+F K + +VI +I YA G ++LA FF T +DVV ++
Sbjct: 95 NYAYKVFEKM---------SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNS 145
Query: 211 MIVGYGLHEWSAFGSFDGLLSNEENE--------YGTALDCSCDLEFLEQGKIVHGFMIK 262
M+ G+ L S D L +E + L LE G VHG +++
Sbjct: 146 MLSGF-LQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVR 204
Query: 263 LGL---ELESDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKL 307
+G + L+ + A C+ N W+A+I+G +N ++L
Sbjct: 205 MGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLEL 264
Query: 308 FPKWMDYYIG------------------------------KSEYRNNVIVNTVLIDMYAK 337
F + IG K ++ +++ V T +DMYAK
Sbjct: 265 FKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAK 324
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
CGS+ A F+ + +A+ VG + G E F + K G+
Sbjct: 325 CGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGL 374
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 111/277 (40%), Gaps = 68/277 (24%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------ 130
YG+ L + L G +H +IK GL L+S LI + C
Sbjct: 482 YGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIE 541
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYYI-------------GKS 168
Q + NA+I+G+ ++E+A F P Y I GK
Sbjct: 542 QQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQ 601
Query: 169 --------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
E ++V + + L+DMY+KCG++ + + F++ +KD V +AMI GY H
Sbjct: 602 IHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGL 661
Query: 221 --SAFGSFDGL-LSNEENEYGT---ALDCSCDLEFLEQG-KIVHGFMIKLGLELESDLLI 273
A G F+ + L N + T L + F+++G + + + GLE
Sbjct: 662 GEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLE------- 714
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
P + ++ MI ++G EA+KL +
Sbjct: 715 ---------PQIEHYSCMIDIIGRSGRISEALKLIQE 742
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 78/197 (39%), Gaps = 47/197 (23%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTIVF 57
P+ T VLKAC + +L G +H +I G F+ L D G+ +
Sbjct: 477 PDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKI 536
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEEN------------------EYGTALDCSCDLEFL 99
D + W+A + LL + E+ Y LD +L +
Sbjct: 537 HDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASV 596
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNVTLR--NAMIS 142
GK +HG +IKL EL SD+ I+ T V Y PN NAMI
Sbjct: 597 GLGKQIHGQIIKL--ELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMIC 654
Query: 143 GYAKNGYAEEAVKLFPK 159
GYA++G EEA+ F +
Sbjct: 655 GYAQHGLGEEALGYFER 671
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 107/486 (22%), Positives = 179/486 (36%), Gaps = 139/486 (28%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
V KAC +L ++ RVH GF L +D+Y R A F
Sbjct: 84 VAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGN------ALIDMYGK-CRCSEGARLVF 136
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
+G+ + + + C + L + G K+GL E ++++++ P T
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREAL---GAFRKMGLNGERPNSVTVSSIL---PACT 190
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+ SG +G ++ ++ NV V++ L++MYA C S+ A +
Sbjct: 191 DLKDLKSGREVHG---------------FVVRNGMGGNVFVSSALVNMYASCLSIRQAQL 235
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255
FD +D V + +I Y L++ +C E+G
Sbjct: 236 VFDSMSRRDTVSWNVLITAYFLNK----------------------EC-------EKGLS 266
Query: 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY- 314
V G M+ G+ L N WNA+I G +NG E+A+++ + +
Sbjct: 267 VFGRMMSEGVGL----------------NYASWNAVIGGCMQNGRTEKALEVLSRMQNSG 310
Query: 315 -----------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
YI + + ++ T L+ MYAKCG ++L+
Sbjct: 311 FKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSR 370
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------------------- 382
F +D V + M + +HG GEE +LF +
Sbjct: 371 RVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSR 430
Query: 383 -------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
R H +EP H++ +VD+L+RAG A++FI MPIE AL
Sbjct: 431 LVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGAL 490
Query: 430 LSAWKI 435
L ++
Sbjct: 491 LGGCRV 496
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 116/472 (24%), Positives = 175/472 (37%), Gaps = 167/472 (35%)
Query: 79 LSNEENEYGTA--LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR------- 129
LS+E N T L ++E L Q +HG M+K GL L+ L A C
Sbjct: 12 LSSESNAAQTLHLLQRCSNMEELRQ---IHGQMLKTGLILDEIPASKLLAFCASPNSGSL 68
Query: 130 ----------YQPNVTLRNAMISGYAKNGYAEEAVKL---------------FP------ 158
++PN + N MI GY+ + EEA+ L FP
Sbjct: 69 AYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKAC 128
Query: 159 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 209
+ + +I K + + + L+++Y+K G + A + FD+ +D V +
Sbjct: 129 SSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWN 188
Query: 210 AMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
+MI DG E I++ E+ +
Sbjct: 189 SMI--------------DGYTKCGE--------------------------IEMAYEIFN 208
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+ + N+ W +MISG G +EA+ LF
Sbjct: 209 HM---------PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQA 259
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
KW+ YI K E + I+ VLIDMYAKCG ++ A F + +K V +
Sbjct: 260 CADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 319
Query: 360 SAMTVGYGLHGLGEEG--W---------------------------------VLFHHI-R 383
+AM GY +HG G E W +LF + R
Sbjct: 320 TAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMER 379
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HG +P +HY +VDLL RAG A + I NMP++ ++ ALL+A I
Sbjct: 380 IHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHI 431
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 136/354 (38%), Gaps = 88/354 (24%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V N T P +LKAC ++ +L ++H I +GF T L++Y
Sbjct: 114 VPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGF------GSEIYTTNSLLNVYSKSG 167
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
+ SA FD + + + + +D G+ +E+ ++ +
Sbjct: 168 DIK-SARLLFDQVDQRDTVSWNSMID---------------GYTKCGEIEMAYEIFNHMP 211
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP--------------------------- 158
+ N+ +MISG G +EA+ LF
Sbjct: 212 -----ERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266
Query: 159 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
KW+ YI K E + I+ VLIDMYAKCG ++ A F + +K V + +AMI GY
Sbjct: 267 DQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326
Query: 216 GLH-------EWSAFGSFDGLLSNEENEYGTALDCS-------CDLEFLEQGKIVHGF-- 259
+H EW G+ N+ G CS L F E + +HGF
Sbjct: 327 AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF-ESMERIHGFKP 385
Query: 260 -------MIKL----GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
M+ L GL E++ LI V +PN +W A+++ +G E
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPV---KPNAAIWGALLNACHIHGNLE 436
>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 615
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 136/559 (24%), Positives = 213/559 (38%), Gaps = 150/559 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV--------------C-- 44
M + V N T PL+LKAC LPS+ G +HG + LGF C
Sbjct: 37 MAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSH 96
Query: 45 -----YLFDGLFDRTIVFLD------------------LYHLWSRTEWSAFGSFDGLLSN 81
+FD + R++V + L +W +F +LS
Sbjct: 97 VASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSG 156
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE-LESDLLISLTAV----CRY------ 130
N LD EF GK +H +IKLG+ LE L SL + C
Sbjct: 157 YSN-----LD---SFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKV 208
Query: 131 -----QPNVTLRNAMISGYAKNGYAEEAVKLFPK------------WMDYYIGKSEYRNN 173
+ ++ MI GY K G+A EA LF + +++ G + R+
Sbjct: 209 FDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDL 268
Query: 174 VIVNTV------------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
++ ++V LI MYAKCG++ A FD ++K ++ ++MI GY
Sbjct: 269 LLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGY 328
Query: 216 GL--HEWSAFGSFDGLLSNEENEYG----TALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
H A F ++ + G T + DL L G+ + ++ GLE +
Sbjct: 329 VHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQ 388
Query: 270 DL---LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314
+ LI + + C ++T+W +MI+ YA +G EA+ LF K
Sbjct: 389 QVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHK---- 444
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
M + D ++ +++ + GL EE
Sbjct: 445 -------------------------------MTTAEGIMPDAIVYTSVFLACSHSGLVEE 473
Query: 375 GWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
G F ++K GI P +H ++DLL R G + A I MP +++ V LLSA
Sbjct: 474 GLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSAC 533
Query: 434 KIPMQQWENMLQTIRGIDE 452
+I L T+R +D
Sbjct: 534 RIHGNVELGELATVRLLDS 552
>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
Length = 1113
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 188/497 (37%), Gaps = 140/497 (28%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------ 130
GL+ N+ CS + +F+ G++ GF++K G ESD+ + + + +
Sbjct: 161 GLVPNDYCYTAVIRACS-NSDFVGVGRVTLGFLMKTG-HFESDVCVGCSLIDMFVKGENS 218
Query: 131 ------------QPNVTLRNAMISGYAKNGYAEEAVKLF--------------------- 157
+ NV MI+ + G+ EA++ F
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278
Query: 158 -PKWMDYYIGKSEY----RNNVI--VNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVM 207
+ + +GK + R+ ++ V L+DMYAKC GSVD FDR D V+
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS 338
Query: 208 RSAMIVGYGLH---EWSAFGSFDGLLSNEENE-----YGTALDCSCDLEFLEQGKIVHGF 259
+A+I GY + A F +++ E + +A +L GK V G
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398
Query: 260 MIKLGLELESDLLISLTAV---------------CRYQPNVTLWNAMISGYAKNGYAEEA 304
K GL S + S+ ++ + N+ +N + G +N E+A
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQA 458
Query: 305 VKLFPKWMDYYIGKSEY------------------------------RNNVIVNTVLIDM 334
KL + + +G S + N V LI M
Sbjct: 459 FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISM 518
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG---------------------- 372
Y+KCGS+D A F+ +++V+ ++M G+ HG
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578
Query: 373 -------------EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
EGW F+ + H I+P+ +HYA +VDLL RAG AF+FI MP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638
Query: 419 IELRLSVRRALLSAWKI 435
+ + V R L A ++
Sbjct: 639 FQADVLVWRTFLGACRV 655
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 34/219 (15%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V PN T KAC L +G +V GQ F GL + V + ++
Sbjct: 369 VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK---------RGLASNSSVANSVISMFV 419
Query: 66 RTEW--SAFGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLI 122
+++ A +F+ L Y T LD +C +L F + K++ E +L +
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT-------ERELGV 472
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
S +++SG A G + ++ + + K N V LI
Sbjct: 473 SAFTFA----------SLLSGVANVGSIRKGEQIHSQ-----VVKLGLSCNQPVCNALIS 517
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
MY+KCGS+D A F+ +++V+ ++MI G+ H ++
Sbjct: 518 MYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFA 556
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 77/312 (24%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV- 134
DG+ + + + L GK+VH +I+ +E +S L SL ++ +
Sbjct: 55 DGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSA 114
Query: 135 -------TLR----------NAMISGYAKNGYAEEAVKLFPKWMD--------------- 162
T+R +AM++ Y NG +A+K+F ++++
Sbjct: 115 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIR 174
Query: 163 ----------------YYIGKSEYRNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLDKDV 205
+ + + ++V V LIDM+ K S + A FD+ + +V
Sbjct: 175 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 234
Query: 206 VMRSAMI-----VGYGLHEWSAFGSFDGLLSNEENE---YGTALDCSCDLEFLEQGKIVH 257
V + MI +G+ F D +LS E++ + +LE L GK +H
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFF--LDMVLSGFESDKFTLSSVFSACAELENLSLGKQLH 292
Query: 258 GFMIKLGLELESDL-LISLTAVCRY---------------QPNVTLWNAMISGYAKN-GY 300
+ I+ GL + + L+ + A C +V W A+I+GY KN
Sbjct: 293 SWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNL 352
Query: 301 AEEAVKLFPKWM 312
A EA+ LF + +
Sbjct: 353 ATEAINLFSEMI 364
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 111/514 (21%), Positives = 205/514 (39%), Gaps = 95/514 (18%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL----VCYLFDGLFDRTIV 56
MQ A T +L+AC L +L G ++HG + G + +C ++ R
Sbjct: 223 MQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNR 282
Query: 57 FLDLYHLWSRTE------WSAFGS---FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 107
++ TE W++ S +G L+ + + S + + ++ G
Sbjct: 283 LELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSG 342
Query: 108 FMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 167
+++ E + SL + ++P+ + + + GY K + YI +
Sbjct: 343 HLLQGSYENVLTNIRSLQSA-GFKPDSCSITSALQAVIELGYFN-----LGKEIHGYIMR 396
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
S+ +V V T L+DMY K ++ A + F T +K++ +++I GY ++
Sbjct: 397 SKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGY---------TYK 447
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
GL N E + + + +V G+ + G E+ +I+ PNV
Sbjct: 448 GLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMS-GCSEEALAVINRIKSLGLTPNVVS 506
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------ 317
W AMISG +N +A++ F + + +
Sbjct: 507 WTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSM 566
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
K + +++ + T LIDMY+K G + +A F +K + + M +GY ++G GEE +
Sbjct: 567 KHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFT 626
Query: 378 LFHHIRKHGIEPRH------------------------------------QHYARVVDLL 401
LF ++ K GI P +HY+ +VDLL
Sbjct: 627 LFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLL 686
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+AG+ + A FI MP + S+ A+L+A ++
Sbjct: 687 GKAGFLDEALDFIHAMPQKADASIWGAVLAACRL 720
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 115/281 (40%), Gaps = 40/281 (14%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMIVGYGLHEWSAFGS 225
K ++ +V ++ LI++Y KC +D A FD T L +D + + ++ W
Sbjct: 159 KRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWE---- 214
Query: 226 FDGLLSNEENEYGTA----------LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
D L + + +A L L L +GK +HG++I+ G +S
Sbjct: 215 -DALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFG-------RVSN 266
Query: 276 TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335
T++C N+++S Y++N E A +F D+ + N I+++ ++
Sbjct: 267 TSIC---------NSIVSMYSRNNRLELARAVFDSTEDHNLASW----NSIISSYAVNGC 313
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA 395
G+ DL ++ D++ +++ G+ L G E ++ G +P
Sbjct: 314 LN-GAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSIT 372
Query: 396 RVVDLLARAGYSN---HAFKFIMNMPIELRLSVRRALLSAW 433
+ + GY N +IM +E + V +L+ +
Sbjct: 373 SALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMY 413
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 112/496 (22%), Positives = 181/496 (36%), Gaps = 158/496 (31%)
Query: 17 LKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
L AC L L +G ++HG I + L ++ GL D ++ A F
Sbjct: 163 LSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLID--------FYSKCGLVGCARRVF 214
Query: 76 DGLLSNEENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 131
DG+ + + C +E LE G M +LG + + L S+ + C
Sbjct: 215 DGMEEKNVVSWNCLITCYEQNGPAIEALE----AFGRMTELGFKPDEVTLASVVSAC--- 267
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
A ++ + +E V++ + + ++RN++I+ L+DMYAKCG V+
Sbjct: 268 -------ATLAAF------KEGVQIHAR----VVKSDKFRNDLILGNALVDMYAKCGRVN 310
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251
A FDR ++ V + M
Sbjct: 311 EARCVFDRMPVRNAVSETTM---------------------------------------- 330
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF--- 308
V G+ ++ + ++ Q ++ WNA+I+GY +NG EEA+ LF
Sbjct: 331 ----VSGYAKSASVKAARSMFATIK-----QKDIVSWNALIAGYTQNGENEEALGLFRML 381
Query: 309 -------------------PKWMDYYIGKSEYRN--------------NVIVNTVLIDMY 335
D +G+ + + ++ V LIDMY
Sbjct: 382 KRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMY 441
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------- 382
KCGSV+ F+ ++KD V + M +GY +G G E LF +
Sbjct: 442 MKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMI 501
Query: 383 -----------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
++HG+ P HY +VDLL RAG A I +MP
Sbjct: 502 GTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPK 561
Query: 420 ELRLSVRRALLSAWKI 435
+ V +LLSA K+
Sbjct: 562 QPDAVVWSSLLSACKV 577
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/428 (22%), Positives = 165/428 (38%), Gaps = 121/428 (28%)
Query: 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAM 140
+ + + LD L + VHG +I+ T C V ++N +
Sbjct: 22 TDSSPFAKLLDLCVKLRSSRDARSVHGRLIQ-------------TPFCE---EVFIQNRL 65
Query: 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
I Y K GY + A K+F + + ++ + N I++T++ + G VD + F
Sbjct: 66 IDVYGKCGYLDYARKVFDRMSE----RNVFSFNSIISTLM-----RWGFVDESAWLFSLM 116
Query: 201 LDKDVVMRSAMIVGYGLH-------EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253
+KD ++MI G+ H +W D + N+ + +G+ L L+ L+ G
Sbjct: 117 PEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYS-FGSGLSACSRLKDLKLG 175
Query: 254 KIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVTLWNAMISGYAKN 298
+HG + K L+ + LI + C + NV WN +I+ Y +N
Sbjct: 176 AQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQN 235
Query: 299 GYAEEAVKLFPKWMDY-------------------------------YIGKSEYRNNVIV 327
G A EA++ F + + + ++RN++I+
Sbjct: 236 GPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLIL 295
Query: 328 NTVLIDMYAKCGSVDLAPMFFDR-------------------------------TLDKDV 356
L+DMYAKCG V+ A FDR KD+
Sbjct: 296 GNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDI 355
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY-------ARVVDL-LARAGYSN 408
V +A+ GY +G EE LF +++ + P H + A + DL L R +S+
Sbjct: 356 VSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSH 415
Query: 409 ---HAFKF 413
H F+F
Sbjct: 416 VVKHGFRF 423
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 161/401 (40%), Gaps = 101/401 (25%)
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK---NGYAEEAVKLFPKWMD 162
H ++KLG SD + + Y V NAM+SGY K G A+ + P+
Sbjct: 48 HAHVLKLGHG--SDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPE--- 102
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE 219
NVI T ++ YAK ++ A +FD ++ VV +AM+ GY GL E
Sbjct: 103 ---------RNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 153
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
A FD +L N + ++ +M L+ L ++
Sbjct: 154 -EALRLFDEMLGAYRNS-------------VTWNAMISAYMRVGDLDSARKLFNTMPG-- 197
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK----------------------------- 310
NV WN+MI+GYA+NG + A++LF +
Sbjct: 198 ---RNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 254
Query: 311 --WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
W+ ++ +++ + ++ + +I MY++CGS++ A F +DVV + + G+
Sbjct: 255 GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 314
Query: 369 HGLGEEGWVLFHHIRKHGIEPRH-------------------------------QHYARV 397
HG G E L +++ GIEP HYA +
Sbjct: 315 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACM 374
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQ 438
VDLL R G A + + MP+E V +LL+A +I Q
Sbjct: 375 VDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQ 415
>gi|255554336|ref|XP_002518208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542804|gb|EEF44341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 177/462 (38%), Gaps = 130/462 (28%)
Query: 26 LLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
L + + H QIFS+ F + Y G+ + + + + S W++ S
Sbjct: 43 LTLTQQCHAQIFSMDFSQNPFIATKLISAYAICGVPTASKLVFNSLEVKSVPLWNSLIS- 101
Query: 76 DGLLSNEENEYGTALDCS-------------------C-DLEFLEQGKIVHGFMIKLGLE 115
G + N+EN +L C C ++ L GKI+HG +K+G
Sbjct: 102 -GYVKNQENTESFSLFCQMCSFGVLPDDYTLATLSKVCGEIGHLIAGKIIHGLSLKIGFV 160
Query: 116 LESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 175
L++ + N+++S Y K G EA+KLF + + +G
Sbjct: 161 LDT----------------VVANSLMSMYCKCGEFSEALKLFDEMPERSVGSW------- 197
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
V+I Y+ G +L D D + DG N
Sbjct: 198 --NVVIAGYSDSGDRNLNQQIVDLVKDMQI---------------------DGFKPNAFT 234
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY----------- 281
+ C D+E L+ G+ +HGF+++ L+L SD+ + + Y
Sbjct: 235 VSSLLVLCDGDIEKLDYGRELHGFIVRNELDLGCLGSDVHLGSCLIDMYSRINRVEKCMQ 294
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLF--------------------------- 308
+ NV +W AMI+GY +NG EEA+ LF
Sbjct: 295 LFDQMKRRNVYVWTAMINGYVQNGALEEALTLFHEMQAKDGVEPNRVTLVSVLPICSSLA 354
Query: 309 ----PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR-TLDKDVVMRSAMT 363
K + Y + + ++ LIDMY+KCGS++ A FD T +D + S++
Sbjct: 355 GLPGGKQIHGYAIRKRLNFDASLSNALIDMYSKCGSLNYARRVFDNGTFRRDAISWSSII 414
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
GYGLHG GEE L+ + + G +P V+ R+G
Sbjct: 415 SGYGLHGKGEEAVFLYDKMLQLGNKPDQITVIGVISACGRSG 456
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 155/364 (42%), Gaps = 89/364 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEW 220
++ K+ + NV V+ L+D Y+K SV A FD ++D V + +I GY G H++
Sbjct: 235 FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKY 294
Query: 221 SAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLI 273
AF F L ++ + T L + + E G+ +H I + E + L+
Sbjct: 295 -AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLV 353
Query: 274 SLTAVC-RYQ------PNVT-----LWNAMISGYAKNGYAEEAVKLFPK----------- 310
+ A C +++ N+T W AMIS Y + G+ EE ++LF K
Sbjct: 354 DMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQA 413
Query: 311 -------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ +I KS + +NV + L+D+YAKCGS+ A F
Sbjct: 414 TFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEM 473
Query: 352 LDKDVVMRSAMTVGY-------------------GLH----------------GLGEEG- 375
D+++V +AM Y GL GL EEG
Sbjct: 474 PDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGL 533
Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
W + + ++PR +HYA VVD+L R+G N A K + MPI+ + ++L+A +I
Sbjct: 534 WHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRI 593
Query: 436 PMQQ 439
Q
Sbjct: 594 HKNQ 597
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 74/274 (27%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
Y + +IV L+D Y K +DLA F E SF
Sbjct: 175 YDSRLIVGNTLVDSYCKSNRLDLACQLF--------------------KEMPEIDSF--- 211
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-------------LGLELESDLLISLT 276
+ L + L+ + G+ +H F+IK L + D +I
Sbjct: 212 ------TFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDAR 265
Query: 277 AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLF----------------------PKWM 312
+ P + +N +ISGYA +G + A LF +
Sbjct: 266 KLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTL 325
Query: 313 DYYIGKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
D+ +G+ + ++ V L+DMYAKCG + A M F + V +AM
Sbjct: 326 DWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMIS 385
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
Y G EEG LF+ +R+ + +A ++
Sbjct: 386 AYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 419
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 123/305 (40%), Gaps = 57/305 (18%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ P+ + N + + KNG +A +LF K ++N V N ++I Y K G+
Sbjct: 43 FDPDTSRSNFRVGNFLKNGELSQARQLFEKM--------PHKNTVSTN-MMISGYVKSGN 93
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEWS-AFGSFDGLLS-NEENEYGT--ALDCS 244
+ A FD +++ V + +I GY L+++ AF F + E +Y T L
Sbjct: 94 LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 153
Query: 245 CD-LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEE 303
C+ E Q V +IKLG Y + + N ++ Y K+ +
Sbjct: 154 CNGHEMGNQITQVQTQIIKLG----------------YDSRLIVGNTLVDSYCKSNRLDL 197
Query: 304 AVKLFP--------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
A +LF + + ++ K+ + NV V+ L+D Y+K
Sbjct: 198 ACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK 257
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397
SV A FD ++D V + + GY G + + LF ++ + + +A +
Sbjct: 258 HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATM 317
Query: 398 VDLLA 402
+ + +
Sbjct: 318 LSIAS 322
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 49/190 (25%)
Query: 72 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC 128
F +FD ++ + T L + + E G+ +H I + E + L+ + A C
Sbjct: 304 FTAFD----RKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 359
Query: 129 -RYQ------PNVTLRNA-----MISGYAKNGYAEEAVKLFPK----------------- 159
+++ N+T R+A MIS Y + G+ EE ++LF K
Sbjct: 360 GKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 419
Query: 160 -------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
+ +I KS + +NV + L+D+YAKCGS+ A F D+++V
Sbjct: 420 RASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIV 479
Query: 207 MRSAMIVGYG 216
+AMI Y
Sbjct: 480 SWNAMISAYA 489
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 142/365 (38%), Gaps = 96/365 (26%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MI+GYA+NG EA +LF + +V T ++ + + G +D A F
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPI---------RDVFAWTAMVSGFVQNGMLDEATRIF 300
Query: 198 DRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255
+ +K+ V +AMI GY + A FD + S + + T + ++Q KI
Sbjct: 301 EEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKI 360
Query: 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
+ M Q + W AMISGYA++G +EEA+ LF
Sbjct: 361 LFDEMP--------------------QRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400
Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
K + + K+ ++ I L+ MY KCGS++ A
Sbjct: 401 GILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAF 460
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR---------------------- 383
F+ +KD+V + M GY HG G+E LF ++
Sbjct: 461 DVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGL 520
Query: 384 -------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
+GI +HY ++DLL RAG + A + +MP + ALL
Sbjct: 521 VDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL 580
Query: 431 SAWKI 435
A +I
Sbjct: 581 GASRI 585
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 128/329 (38%), Gaps = 86/329 (26%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
R + VT NAMISGY N + A K+F K D ++I V++ Y K G
Sbjct: 87 RRRSTVTY-NAMISGYLSNNKFDCARKVFEKMPD---------RDLISWNVMLSGYVKNG 136
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTAL----- 241
++ A F++ +KDVV +AM+ G+ + + A FD +L E + L
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQ 196
Query: 242 -----------DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
D D E + ++ G++ K L+ L + + WN
Sbjct: 197 NGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS-----WNI 251
Query: 291 MISGYAKNGYAEEAVKLFPK--------WMDYYIG-------------------KSEYRN 323
MI+GYA+NG EA +LF + W G K+E
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSW 311
Query: 324 NVIV----------------------NT----VLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
N ++ NT ++ YA+CG++D A + FD +D +
Sbjct: 312 NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCI 371
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
+AM GY G EE LF +++ G
Sbjct: 372 SWAAMISGYAQSGQSEEALHLFIKMKRDG 400
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 27/186 (14%)
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTA 240
I Y + G + A F+ + V +AMI GY L +N+ +
Sbjct: 67 ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGY-------------LSNNKFDCARKV 113
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300
+ D + + ++ G++ L L + + +V WNAM+SG+A+NG+
Sbjct: 114 FEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP-----EKDVVSWNAMLSGFAQNGF 168
Query: 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
EEA K+F + + +N + N L+ Y + G ++ A FD +D ++V +
Sbjct: 169 VEEARKIFDQML--------VKNEISWNG-LLSAYVQNGRIEDARRLFDSKMDWEIVSWN 219
Query: 361 AMTVGY 366
+ GY
Sbjct: 220 CLMGGY 225
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
++ WN IS Y + G E A+ +F R + + +I Y D
Sbjct: 58 SDIVKWNRKISAYMRKGQCESALSVF---------NGMRRRSTVTYNAMISGYLSNNKFD 108
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
A F++ D+D++ + M GY +G LF+ + + + + ++ A
Sbjct: 109 CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS----WNAMLSGFA 164
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ G+ A K M ++ +S LLSA+
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISW-NGLLSAY 194
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 107/468 (22%), Positives = 172/468 (36%), Gaps = 167/468 (35%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------ 130
+ +AL + L G+ VHG + + + + L+ + A C
Sbjct: 154 FASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMP 213
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD---------------------------- 162
+ NV N++I+ Y +NG EA+ LF + M
Sbjct: 214 ERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQ 273
Query: 163 ---YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
+ + + R+++++N L+DMYAKCG A FD + VV ++++ GY
Sbjct: 274 VHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGY---- 329
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
+ N +E ++V M+
Sbjct: 330 -----------AKSAN--------------VEDAQVVFSQMV------------------ 346
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK------WMDYY----------------IG 317
+ NV WN +I+ YA+NG EEA++LF + W +Y +G
Sbjct: 347 --EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLG 404
Query: 318 KSEY--------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+ + ++V V L+DMY K GS+D F+R +D V +AM
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 464
Query: 364 VGY-----------------------------------GLHGLGEEGWVLFHHIRK-HGI 387
VGY G GL +EG FH + + HGI
Sbjct: 465 VGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGI 524
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P HY +VDLL RAG+ A + I +MP E + +LL A ++
Sbjct: 525 TPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRL 572
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 114/301 (37%), Gaps = 63/301 (20%)
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
L N ++S YA+ G EA ++F RN N L+ YA+ G D A
Sbjct: 54 LLNTLVSTYARLGRLREARRVFDGI--------PLRNTFSYNA-LLSAYARLGRPDEARA 104
Query: 196 FFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE--------YGTALDCSCDL 247
F+ D D +A++ H G L+ + + +AL
Sbjct: 105 LFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAE 164
Query: 248 EFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNVTLWNAMI 292
+ L G+ VHG + + + + L+ + A C + NV WN++I
Sbjct: 165 KDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLI 224
Query: 293 SGYAKNGYAEEAVKLFPKWM-------------------------------DYYIGKSEY 321
+ Y +NG EA+ LF + M + + +
Sbjct: 225 TCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRL 284
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
R+++++N L+DMYAKCG A FD + VV +++ GY E+ V+F
Sbjct: 285 RDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQ 344
Query: 382 I 382
+
Sbjct: 345 M 345
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 142/365 (38%), Gaps = 96/365 (26%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MI+GYA+NG EA +LF + +V T ++ + + G +D A F
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPI---------RDVFAWTAMVSGFVQNGMLDEATRIF 300
Query: 198 DRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255
+ +K+ V +AMI GY + A FD + S + + T + ++Q KI
Sbjct: 301 EEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKI 360
Query: 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
+ M Q + W AMISGYA++G +EEA+ LF
Sbjct: 361 LFDEMP--------------------QRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400
Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
K + + K+ ++ I L+ MY KCGS++ A
Sbjct: 401 GILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAF 460
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR---------------------- 383
F+ +KD+V + M GY HG G+E LF ++
Sbjct: 461 DVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGF 520
Query: 384 -------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
+GI +HY ++DLL RAG + A + +MP + ALL
Sbjct: 521 VDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL 580
Query: 431 SAWKI 435
A +I
Sbjct: 581 GASRI 585
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 128/329 (38%), Gaps = 86/329 (26%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
R + VT NAMISGY N + A K+F K D ++I V++ Y K G
Sbjct: 87 RRRSTVTY-NAMISGYLSNNKFDCARKVFEKMPD---------RDLISWNVMLSGYVKNG 136
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTAL----- 241
++ A F++ +KDVV +AM+ G+ + + A FD +L E + L
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQ 196
Query: 242 -----------DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
D D E + ++ G++ K L+ L + + WN
Sbjct: 197 NGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS-----WNI 251
Query: 291 MISGYAKNGYAEEAVKLFPK--------WMDYYIG-------------------KSEYRN 323
MI+GYA+NG EA +LF + W G K+E
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSW 311
Query: 324 NVIV----------------------NT----VLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
N ++ NT ++ YA+CG++D A + FD +D +
Sbjct: 312 NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCI 371
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
+AM GY G EE LF +++ G
Sbjct: 372 SWAAMISGYAQSGQSEEALHLFIKMKRDG 400
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 41/193 (21%)
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTA 240
I Y + G + A F+ + V +AMI GY LSN +
Sbjct: 67 ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGY--------------LSNNK------ 106
Query: 241 LDCS-------CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
DC+ D + + ++ G++ L L + + +V WNAM+S
Sbjct: 107 FDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP-----EKDVVSWNAMLS 161
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
G+A+NG+ EEA K+F + + +N + N L+ Y + G ++ A FD +D
Sbjct: 162 GFAQNGFVEEARKIFDQML--------VKNEISWNG-LLSAYVQNGRIEDARRLFDSKMD 212
Query: 354 KDVVMRSAMTVGY 366
++V + + GY
Sbjct: 213 WEIVSWNCLMGGY 225
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
++ WN IS Y + G E A+ +F R + + +I Y D
Sbjct: 58 SDIVKWNRKISAYMRKGQCESALSVF---------NGMRRRSTVTYNAMISGYLSNNKFD 108
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
A F++ D+D++ + M GY +G LF+ + + + + ++ A
Sbjct: 109 CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS----WNAMLSGFA 164
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ G+ A K M ++ +S LLSA+
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISW-NGLLSAY 194
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 140/331 (42%), Gaps = 94/331 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N++I GY K+G E+A LF Y+ R +V+ +ID YAK G V A F
Sbjct: 231 NSLIDGYVKHGRMEDAKDLF------YVMP---RRDVVTWATMIDGYAKLGFVHKAKTLF 281
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D+ +DVV ++M+ GY +N+Y ++E LE
Sbjct: 282 DQMPHRDVVAYNSMMAGY-----------------VQNKY--------NMEALE------ 310
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
I +E ES L P+ T ++S A+ G +A+ M YI
Sbjct: 311 ---IFSDMEKESHL----------SPDETTLVIVLSAIAQLGRLSKAMD-----MHLYIV 352
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE---- 373
+ ++ + LIDMY+KCGS+ A + F+R +K + +AM G +HGLGE
Sbjct: 353 EKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFD 412
Query: 374 -------------------------------EGWVLFHHIR-KHGIEPRHQHYARVVDLL 401
EG + F +R KH IEPR QHY +VD+L
Sbjct: 413 MLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 472
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+R+G A I MP+E + R L+A
Sbjct: 473 SRSGSIELAKNLIEEMPMEPNDVIWRTFLTA 503
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 136/624 (21%), Positives = 229/624 (36%), Gaps = 190/624 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF------------------- 41
M V+ P+ P VLKA L L G ++H G+
Sbjct: 83 MTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCG 142
Query: 42 ---LVCYLFDGLFDRTIVFLDLY--HLWSRTEW-SAFGSFDGL-LSNEENEYGT----AL 90
VC +FD + DR V + + L +W A +F + + N E T AL
Sbjct: 143 GIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVAL 202
Query: 91 DCSC--DLEFLEQGKIVHGFMIKLGLE--LESDLLISLTA-VCRYQPNVTLR-------- 137
CS + L GK +HG+ +++G + ++ L+++ A + R + L
Sbjct: 203 ACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDM 262
Query: 138 ---NAMISGYAKNGYAEEAVKLF-------------------------------PKWMDY 163
N MIS ++++ EA+ F + Y
Sbjct: 263 VSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAY 322
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEW 220
+ ++ N V + L+DMY C V+ FD L + + + +AMI GY GL E
Sbjct: 323 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK 382
Query: 221 SAFGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDL 271
+ + GLL N + + E + +HG+ +KLG + +++ L
Sbjct: 383 ALILFIEMIKVAGLLPNTTT-MASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNAL 441
Query: 272 LISLTAVCRYQPNVTL-----------WNAMISGYAKNG--------------------- 299
+ + + + + T+ WN MI+GY +G
Sbjct: 442 MDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDV 501
Query: 300 ------------YAEEAVKLFP--------------KWMDYYIGKSEYRNNVIVNTVLID 333
Y A+ L K + Y ++ +++ V + L+D
Sbjct: 502 KKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVD 561
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------- 382
MYAKCG ++L+ F+ +K+V+ + + + G+HG GEE LF ++
Sbjct: 562 MYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAK 621
Query: 383 ------------------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFK 412
HG+EP HYA VVDLL RAG A++
Sbjct: 622 PNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYE 681
Query: 413 FIMNMPIEL-RLSVRRALLSAWKI 435
+ MP E ++ +LL A +I
Sbjct: 682 LVNTMPAEFDKVGAWSSLLGACRI 705
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 185/467 (39%), Gaps = 124/467 (26%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
P+ T P+VLKAC + G +VHG +GFL C L+ V L H +S
Sbjct: 103 PDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFL-CDLY--------VQNSLLHFYSVC 153
Query: 68 -EWSAFGS-FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLISL 124
+W G FD +L + + ++ G+ ++ GL E+ +L + +
Sbjct: 154 GKWGGAGRVFDEMLVRD---------------VVSWTGLISGY-VRTGLFDEAINLFLKM 197
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
V PNV +++ + GY K + + K + ++V L+DMY
Sbjct: 198 DVV----PNVATFVSVLVACGRMGYLSMG-----KGVHGLVYKRAFGIGLVVGNALVDMY 248
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCS 244
KC + A FD D+D+V +++I G
Sbjct: 249 VKCECLCEARKLFDELPDRDIVSWTSIISG------------------------------ 278
Query: 245 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304
+V K LEL D+ IS +P+ + +++S A G +
Sbjct: 279 ----------LVQCKQPKDSLELFYDMQIS-----GVEPDRIILTSVLSACASLGALD-- 321
Query: 305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ +W+ YI + ++ + T L+DMYAKCG +++A F+ ++++ +A+
Sbjct: 322 ---YGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLG 378
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEP----------------------------------- 389
G +HG G E F + GI P
Sbjct: 379 GLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNF 438
Query: 390 --RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
R +HY ++DLL RAG + A+KFI NMP+ + + ALLSA K
Sbjct: 439 SPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACK 485
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 188/497 (37%), Gaps = 140/497 (28%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------ 130
GL+ N+ CS + +F+ G++ GF++K G ESD+ + + + +
Sbjct: 161 GLVPNDYCYTAVIRACS-NSDFVGVGRVTLGFLMKTG-HFESDVCVGCSLIDMFVKGENS 218
Query: 131 ------------QPNVTLRNAMISGYAKNGYAEEAVKLF--------------------- 157
+ NV MI+ + G+ EA++ F
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278
Query: 158 -PKWMDYYIGKSEY----RNNVI--VNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVM 207
+ + +GK + R+ ++ V L+DMYAKC GSVD FDR D V+
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS 338
Query: 208 RSAMIVGYGLH---EWSAFGSFDGLLSNEENE-----YGTALDCSCDLEFLEQGKIVHGF 259
+A+I GY + A F +++ E + +A +L GK V G
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398
Query: 260 MIKLGLELESDLLISLTAV---------------CRYQPNVTLWNAMISGYAKNGYAEEA 304
K GL S + S+ ++ + N+ +N + G +N E+A
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQA 458
Query: 305 VKLFPKWMDYYIGKSEY------------------------------RNNVIVNTVLIDM 334
KL + + +G S + N V LI M
Sbjct: 459 FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISM 518
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG---------------------- 372
Y+KCGS+D A F+ +++V+ ++M G+ HG
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578
Query: 373 -------------EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
EGW F+ + H I+P+ +HYA +VDLL RAG AF+FI MP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638
Query: 419 IELRLSVRRALLSAWKI 435
+ + V R L A ++
Sbjct: 639 FQADVLVWRTFLGACRV 655
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 34/219 (15%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V PN T KAC L +G +V GQ F GL + V + ++
Sbjct: 369 VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK---------RGLASNSSVANSVISMFV 419
Query: 66 RTEW--SAFGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLI 122
+++ A +F+ L Y T LD +C +L F + K++ E +L +
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT-------ERELGV 472
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
S +++SG A G + ++ + + K N V LI
Sbjct: 473 SAFTFA----------SLLSGVANVGSIRKGEQIHSQ-----VVKLGLSCNQPVCNALIS 517
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
MY+KCGS+D A F+ +++V+ ++MI G+ H ++
Sbjct: 518 MYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFA 556
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 77/286 (26%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNV--------TLR----------NAMISG 143
GK+VH +I+ +E +S L SL ++ + T+R +AM++
Sbjct: 81 GKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMAC 140
Query: 144 YAKNGYAEEAVKLFPKWMD-------------------------------YYIGKSEYRN 172
Y NG +A+K+F ++++ + + + +
Sbjct: 141 YGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFES 200
Query: 173 NVIVNTVLIDMYAKC-GSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHEWSAFGSF 226
+V V LIDM+ K S + A FD+ + +VV + MI +G+ F
Sbjct: 201 DVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFF--L 258
Query: 227 DGLLSNEENE---YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-LISLTAVCRY- 281
D +LS E++ + +LE L GK +H + I+ GL + + L+ + A C
Sbjct: 259 DMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSAD 318
Query: 282 --------------QPNVTLWNAMISGYAKN-GYAEEAVKLFPKWM 312
+V W A+I+GY KN A EA+ LF + +
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMI 364
>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 729
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 119/472 (25%), Positives = 185/472 (39%), Gaps = 129/472 (27%)
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVT 135
C C E + QG+ +HGF IK G L+S L L+S+ A C + +V
Sbjct: 166 SCGC-FELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEASQLLFDEMDEKSVV 224
Query: 136 LRNAMISGYAKNGYAEEAV------------------------KLFPKWMDYYIGKSEYR 171
N MI Y +NG ++A+ FP+ + Y+ K +
Sbjct: 225 SWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSANAFPENVHCYVVKCGFT 284
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL 229
N+ V T L+ +YAK G + A + KD++ +A+I Y SA F
Sbjct: 285 NDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTAIISSYSEKGDIESAVECFIQT 344
Query: 230 LSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAV---- 278
+ + AL + G HG+ +K GL L ++ LISL +
Sbjct: 345 IQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSGLSNDCLVANGLISLYSRFDEI 404
Query: 279 ---------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM----------------- 312
R +P +T WN+MISG + G + +A++LF +
Sbjct: 405 EAALSLFYDMREKPLIT-WNSMISGCVQAGKSSDAMELFSEMSMCGKKPDAITIASLLSG 463
Query: 313 -----DYYIGKSEY----RNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ IG++ + RNNV + T LIDMY+KCG +D A F D +
Sbjct: 464 CCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMYSKCGRLDYAEKVFYNIKDPCLATW 523
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------------------- 391
+A+ GY L+GL + + +++ G++P
Sbjct: 524 NAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKITFLGVLAACTHGGLVYLGLEYFNIMTK 583
Query: 392 --------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
QHYA +V LL + G A +FI M I+ +V ALL+A I
Sbjct: 584 EYGLMPSLQHYACIVALLGKEGLFKEAIEFINKMEIQPDSAVWGALLNACCI 635
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 47/260 (18%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNE 233
V+T LID+Y K G A FD+ +DVV + +I GY + + A F +L
Sbjct: 93 VHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLREN 152
Query: 234 ENEYGTAL-----DCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------ 279
T + C C E + QG+ +HGF IK G L+S L L+S+ A C
Sbjct: 153 FKPNQTTIVSLLPSCGC-FELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEAS 211
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAV------------------------KLFP 309
+ +V WN MI Y +NG ++A+ FP
Sbjct: 212 QLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSANAFP 271
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+ + Y+ K + N+ V T L+ +YAK G + A + KD++ +A+ Y
Sbjct: 272 ENVHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTAIISSYSEK 331
Query: 370 GLGEEGWVLFHHIRKHGIEP 389
G E F + I+P
Sbjct: 332 GDIESAVECFIQTIQLDIKP 351
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 113/496 (22%), Positives = 191/496 (38%), Gaps = 119/496 (23%)
Query: 3 VAWVAPNGCTPPLVLKACV-------------ALPSLL--------MGPRVHGQIFSLGF 41
+A + TP LVL AC ALP+LL G V G +L F
Sbjct: 39 LATIRAAATTPRLVLAACACLRRTGLPPPGPRALPALLRSAARCVGAGAYVRGA-HALAF 97
Query: 42 LVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS-------FDGLLSNEENEYGTALDCSC 94
V L DG +V ++A G FDG+ + +G LD C
Sbjct: 98 RVGSLDDGFVRTALV----------GAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYC 147
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAV 154
++ + M G+ + +L ++ + C + + LR
Sbjct: 148 QTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRH--LRTG--------------- 190
Query: 155 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
K + Y+ S+ N +++ LI++YA C S+++A ++ KD+V +AM+ G
Sbjct: 191 ----KSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFG 246
Query: 215 YGLHEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
Y + FDG+ + + + D + L L +D+
Sbjct: 247 YARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEA-----------LSLFNDM- 294
Query: 273 ISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 332
C +P+ ++IS A G ++A KW+ +I + + + LI
Sbjct: 295 ----QECGIRPDEVTMLSVISACANLGSLDKA-----KWIHAFIKNNGLNKILHICNALI 345
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR--------- 383
DM+AKCG ++LA F+ K+V+ ++M + +HG G+ LF +R
Sbjct: 346 DMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEV 405
Query: 384 ---------------------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
++GIEP+H+HY +VDLL RA A I +
Sbjct: 406 TFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIES 465
Query: 417 MPIELRLSVRRALLSA 432
M + + V +LL+A
Sbjct: 466 MHLRPNVPVWGSLLAA 481
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 163/418 (38%), Gaps = 121/418 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW------MD------------------------YYIGK 167
NAMISG+ +NG EA+++ + MD Y+ K
Sbjct: 217 NAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK 276
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGS 225
++V V+ LI+MY+K G + A FD +D+V +++I Y ++ +A G
Sbjct: 277 HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGF 336
Query: 226 FDGLL-SNEENEYGTALDCSC---DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F +L + T + + L G+ VHGF+++ LE D++I V Y
Sbjct: 337 FKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRW-LEVDIVIGNALVNMY 395
Query: 282 QP-----------------NVTLWNAMISGYAKNGYAEEAVKLFP-------------KW 311
+V WN +I+GYA+NG A EA+ + W
Sbjct: 396 AKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTW 455
Query: 312 MDYYIGKSEY--------------RN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+ S +N +V V T LIDMY KCG ++ A F
Sbjct: 456 VSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQ 515
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--------------------------- 386
+ V +A+ G+HG GE+ LF +R G
Sbjct: 516 ETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWC 575
Query: 387 ---------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I+P +HY +VDL RAGY A+ + NMPI+ S+ LL+A +I
Sbjct: 576 FDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRI 633
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 60/271 (22%)
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE- 219
M ++ K + ++V V LI +Y++ G+V++A F +DV +AMI G+ +
Sbjct: 169 MHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGN 228
Query: 220 -WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ------GKIVHGFMIKLGLELESDLL 272
A D + EE + T + S L Q G +VH ++IK G LESD+
Sbjct: 229 VAEALRVLDR-MKTEEVKMDT-VTVSSMLPICAQSNDVVGGVLVHLYVIKHG--LESDVF 284
Query: 273 ISLTAVCRYQP-----------------NVTLWNAMISGYAKN-------GYAEEAV--- 305
+S + Y ++ WN++I+ Y +N G+ +E +
Sbjct: 285 VSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG 344
Query: 306 ------------KLFPKWMDYYIGKSEY---------RNNVIVNTVLIDMYAKCGSVDLA 344
+F + D IG++ + ++++ L++MYAK GS+D A
Sbjct: 345 MRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCA 404
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
F++ +DV+ + + GY +GL E
Sbjct: 405 RAVFEQLPSRDVISWNTLITGYAQNGLASEA 435
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 105/254 (41%), Gaps = 58/254 (22%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
+GK++ +V++ T L+ +YA G + L+ F K++ ++M+ Y +
Sbjct: 77 LGKAQ---DVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAY-VRRGRYRD 132
Query: 225 SFDGL-----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
S D + LS ++ T L G+ +H +++K+G E D+ ++ + +
Sbjct: 133 SMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFE--HDVYVAASLIH 190
Query: 280 RYQP-----------------NVTLWNAMISGYAKNGYAEEAVKLFPKW------MD--- 313
Y +V WNAMISG+ +NG EA+++ + MD
Sbjct: 191 LYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVT 250
Query: 314 ---------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
Y+ K ++V V+ LI+MY+K G + A FD
Sbjct: 251 VSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGME 310
Query: 353 DKDVVMRSAMTVGY 366
+D+V +++ Y
Sbjct: 311 VRDLVSWNSIIAAY 324
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 146/360 (40%), Gaps = 101/360 (28%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
+ + + V+ LI MYA CG + A FD LD+D+V + +I GY + FD
Sbjct: 55 FESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFD 114
Query: 228 GLLS-NEENEYGTA----LDCS--CDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAV 278
+ + N + + T L CS D EF + M+K E LE D+ + T +
Sbjct: 115 AMTAANIKADAVTMVKIILACSHLGDWEFADS-------MVKYIKENNLEIDVYLGNTLI 167
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------- 312
Y + +V W +MI+GY++ +AVKLF + M
Sbjct: 168 DMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKV 227
Query: 313 ---------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+YI + + ++ V LIDMY KCG V+ A F R
Sbjct: 228 TVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRM 287
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------- 391
DKD V +++ G ++G LF + + G++P H
Sbjct: 288 KDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGL 347
Query: 392 ----------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY VVDLL+R+G + A++FI MPI + V R LLSA K+
Sbjct: 348 EYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKL 407
>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
sativa Japonica Group]
Length = 391
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 127/292 (43%), Gaps = 60/292 (20%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS- 225
KS ++ V + ++DMY KCG +D A DR + VV +A++ G+ L++ S
Sbjct: 8 KSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQK 67
Query: 226 -----FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTA 277
D L + + T LD +L +E GK +HG +IK L E S L+ + A
Sbjct: 68 FFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYA 127
Query: 278 VCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
C P+ L WNAMI GYA +G EA+++F + + NV
Sbjct: 128 KCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQ---------KENV 178
Query: 326 IVN-TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ N + + C V GL ++G FH +
Sbjct: 179 VPNHATFVAVLRACSHV----------------------------GLFDDGCRYFHLMTT 210
Query: 385 H-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H +EP+ +H+A +VD+L R+ A KFI +MP + + + LLS KI
Sbjct: 211 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKI 262
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVCRYQPNVTLR----- 137
+ T LD +L +E GK +HG +IK L E S L+ + A C P+ L
Sbjct: 84 FATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVE 143
Query: 138 -------NAMISGYAKNGYAEEAVKLFPK 159
NAMI GYA +G EA+++F +
Sbjct: 144 KRDFVSWNAMICGYALHGLGVEALRMFER 172
>gi|449456941|ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 480
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 82/267 (30%)
Query: 251 EQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLWNAMISGY 295
++G+IVHG ++K GL+L+ + LI+ + C+ ++ WN+MI GY
Sbjct: 112 DKGEIVHGHVVKCGLDLDLFVGNALIAFYSKCQDVETARKVFDDMSLRDIVSWNSMIVGY 171
Query: 296 AKNGYAEEAVKLFPK--------------------------------WMDYYIGKSEYRN 323
NG +EA+ F W+ Y+ K+
Sbjct: 172 TLNGKEDEAIMFFHAMLHNQADCTPDSATLVAILPACATKSASQVGFWVHSYVIKTGIEV 231
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ + LI MY CG V++A FDR DK+V++ SA+ YG+HG +E + +F +
Sbjct: 232 GAPLGSCLICMYGNCGHVNIARDVFDRIDDKNVIVWSAIIRCYGMHGFADEAFNMFRRLE 291
Query: 384 KHGIEP-----------------------------------RHQHYARVVDLLARAGYSN 408
+ G++P + HYA +VDLL RAG+
Sbjct: 292 EAGVKPDGLIFLNLLSACSHAGLVAKGHEIYEKMEAYGLERKDNHYACMVDLLGRAGFLE 351
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKI 435
A +FI MP++ V ALL A +I
Sbjct: 352 QAVEFIEGMPVQAGKDVYGALLGACRI 378
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 110/277 (39%), Gaps = 93/277 (33%)
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVC-------RYQPNVTLR-----NAMISGY 144
++G+IVHG ++K GL+L+ + LI+ + C + +++LR N+MI GY
Sbjct: 112 DKGEIVHGHVVKCGLDLDLFVGNALIAFYSKCQDVETARKVFDDMSLRDIVSWNSMIVGY 171
Query: 145 AKNGYAEEAVKLFPK--------------------------------WMDYYIGKSEYRN 172
NG +EA+ F W+ Y+ K+
Sbjct: 172 TLNGKEDEAIMFFHAMLHNQADCTPDSATLVAILPACATKSASQVGFWVHSYVIKTGIEV 231
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF---- 226
+ + LI MY CG V++A FDR DK+V++ SA+I YG+H ++ AF F
Sbjct: 232 GAPLGSCLICMYGNCGHVNIARDVFDRIDDKNVIVWSAIIRCYGMHGFADEAFNMFRRLE 291
Query: 227 ------DGL-----------------------------LSNEENEYGTALDCSCDLEFLE 251
DGL L ++N Y +D FLE
Sbjct: 292 EAGVKPDGLIFLNLLSACSHAGLVAKGHEIYEKMEAYGLERKDNHYACMVDLLGRAGFLE 351
Query: 252 QG-KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
Q + + G ++ G D+ +L CR N+ L
Sbjct: 352 QAVEFIEGMPVQAG----KDVYGALLGACRIHNNLEL 384
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 139/341 (40%), Gaps = 68/341 (19%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV AMISGYA+NG A KLF + RN V +L+ Y + G V+
Sbjct: 204 NVVSWTAMISGYAQNGEVNLARKLFEVMPE--------RNEVSWTAMLVG-YIQAGHVED 254
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A F+ + V +AM+VG+G +A F+ + ++ + + EFL
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL 314
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ M+ G+ +IS+ VC A AV + +
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVC---------------------AALAVLDYGR 353
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ + + + +V + LI MY KCG++D A F KD+VM ++M GY HG
Sbjct: 354 EVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHG 413
Query: 371 LGEEGWVLFHHIRKHG------------------------------------IEPRHQHY 394
LGE+ +FH +R G I P +HY
Sbjct: 414 LGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHY 473
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +VDLL R+G AF I NMP+E + AL+ A ++
Sbjct: 474 SCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRM 514
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 67/253 (26%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ P+V +++ GY ++G +A++LF + + N + TVL+ G
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE---------RNHVSYTVLLGGLLDAGR 158
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
V+ A FD D+DVV +AM+ GY C
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGY-----------------------------CQAGR 189
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+ + + + M K NV W AMISGYA+NG A KLF
Sbjct: 190 ITEARALFDEMPKR--------------------NVVSWTAMISGYAQNGEVNLARKLFE 229
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+ RN V +L+ Y + G V+ A F+ + V +AM VG+G
Sbjct: 230 VMPE--------RNEVSWTAMLVG-YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQR 280
Query: 370 GLGEEGWVLFHHI 382
G+ + +F +
Sbjct: 281 GMVDAAKTVFEKM 293
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+V W AM+SGY + G EA LF + + NV+ T +I YA+ G V+L
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMP---------KRNVVSWTAMISGYAQNGEVNL 223
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
A F+ +++ V +AM VGY G E+ LF+ + +H +
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV 267
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+ P+V + +++ GY ++G +A++LF + + N + TVL+ G
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE---------RNHVSYTVLLGGLLDAGR 158
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
V+ A FD D+DVV +AM GY G E LF + K + + ++
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISG 214
Query: 401 LARAGYSNHAFKFIMNMP 418
A+ G N A K MP
Sbjct: 215 YAQNGEVNLARKLFEVMP 232
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 124/470 (26%), Positives = 203/470 (43%), Gaps = 63/470 (13%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-----LFDRTIVFLDL 60
V P T ++ AL +G VH Q+ LGF Y F G ++ + + D
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGA-YAFVGSPLVDMYAKMGLIRDA 200
Query: 61 YHLWSRTEWSAFGSFD----GLLSNEENEYGTAL-DCSCDLEFLEQGKIVHGFMIKLGLE 115
++ E ++ GLL + E L D + + +V G + + GL+
Sbjct: 201 RRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTG-LTQNGLQ 259
Query: 116 LES-DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174
LE+ D+ + A T + + + A E K + YI ++ Y +NV
Sbjct: 260 LEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEE------GKQIHAYITRTWYEDNV 313
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-----AFG--SFD 227
V + L+DMY+KC S+ LA F R ++++ +AMIVGYG + S AF D
Sbjct: 314 FVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMD 373
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
G+ ++ G+ + +L LE+G H + GL RY +T+
Sbjct: 374 GI-KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL-------------MRY---ITV 416
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG----SVDL 343
NA+++ Y K G E+A +LF + M ++ + + T L+ YA+ G ++DL
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDE-MSFH--------DQVSWTALVTGYAQFGKAKETIDL 467
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLA 402
L D V + GL E+G F ++K HGI P HY ++DL +
Sbjct: 468 FEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYS 527
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI----PMQQW--ENMLQT 446
R+G A +FI MP LLS+ ++ + +W EN+L+T
Sbjct: 528 RSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLET 577
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 125/531 (23%), Positives = 212/531 (39%), Gaps = 139/531 (26%)
Query: 3 VAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYH 62
V+ + P+ T P VLKAC +L+ G ++H F LGF V L H
Sbjct: 211 VSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQW---------NVFVAASLIH 258
Query: 63 LWSRTEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
++SR ++ FD + + + + Q V M G+++
Sbjct: 259 MYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVT 318
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
++S+ VC +++ AM+ + Y+ K ++ V+ L
Sbjct: 319 VVSILPVCPQLGDIS--TAML-------------------IHLYVIKHGLEFDLFVSNAL 357
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGL--------- 229
I+MYAK G+++ A F + DVV +++I Y ++ +A G F +
Sbjct: 358 INMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDL 417
Query: 230 --LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP---- 283
L + + + DC + + VHGF+++ G +E D++I V Y
Sbjct: 418 LTLVSLASIVAQSRDC-------KNSRSVHGFIMRRGWLME-DVVIGNAVVDMYAKLGLL 469
Query: 284 -------------NVTLWNAMISGYAKNGYAEEAVKLFP-------------KWMDY--- 314
+V WN +I+GYA+NG A EA++++ W+
Sbjct: 470 DSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 529
Query: 315 --YIG-------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
++G K+ +V V T LID+Y KCG + A F + + V
Sbjct: 530 YAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTW 589
Query: 360 SAMTVGYGLHGLGE-----------------------------------EGWVLFHHIRK 384
+A+ +G+HG E EG F +++
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 649
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI+P +HY +VDLL RAGY A+ FI +MP++ S+ ALL A +I
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRI 700
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 49/244 (20%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGL 229
++ ++T L+++YA G V L+ FD+ KDV ++MI Y H A G F L
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 208
Query: 230 L--SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL---------TAV 278
L S ++ T L G+ +H + KLG + + SL T +
Sbjct: 209 LLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI 268
Query: 279 CRY----QP--NVTLWNAMISGYAKNGYAEEAVKLF----------------------PK 310
R P ++ WNAMISG +NG A +A+ + P+
Sbjct: 269 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328
Query: 311 WMD--------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
D Y+ K ++ V+ LI+MYAK G+++ A F + DVV +++
Sbjct: 329 LGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSI 388
Query: 363 TVGY 366
Y
Sbjct: 389 IAAY 392
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 128/294 (43%), Gaps = 65/294 (22%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEWS 221
K+ Y +V V + L+DMYAKCG + A FD +++VV S MI GY G+ +
Sbjct: 154 KTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALT 213
Query: 222 AFGSFDGLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISL 275
F L+ + + + + + FLE GK++HG +K+ + S LISL
Sbjct: 214 LFK--QALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISL 271
Query: 276 TAVC-----RYQ-------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323
+ C YQ N+ LWN+M+ A++ + + LF +
Sbjct: 272 YSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEM------------ 319
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH--GLGEEGWVLFHH 381
G+V + P F S ++V Y GL E+G F
Sbjct: 320 ---------------GNVGMKPNFI-----------SFLSVLYACSHAGLVEKGREYFSL 353
Query: 382 IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+R +GIEP +HYA +VDLL RAG A I MP+ SV ALL+ +I
Sbjct: 354 MRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRI 407
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 145/352 (41%), Gaps = 95/352 (26%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDV--VMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
V T LI MY KCG V+ A F+ V +A+I GY + + +F +
Sbjct: 87 VLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAF---MFRR 143
Query: 234 ENEYGTALDCSCDL---------EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
E G ++D L E+L G+ +HG +K G E +L S + +
Sbjct: 144 MKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGS 203
Query: 285 V---------------TLWNAMISGYAKNGYAEEAVKLF--------------------- 308
V WNA+ISGY++NG A + ++LF
Sbjct: 204 VESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSS 263
Query: 309 -----PKWMDYYIGK----SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K + +G+ + + NV ++ LI MYA+CG++ A FD K +V
Sbjct: 264 CAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSW 323
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI-------------------------------- 387
+AM YG+HG+GE G LF + K GI
Sbjct: 324 TAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKR 383
Query: 388 ----EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP +HY+ +VDLL RAG + A +FI +MP+E +V ALL A KI
Sbjct: 384 EYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKI 435
>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
Length = 470
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 153/387 (39%), Gaps = 104/387 (26%)
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
LR +G + G A + W+ + + T L+ +Y +CG + A
Sbjct: 13 LRRCAAAGAVRPGAQAHARAVVGGWLP----------DATLETDLVLLYCRCGERERARR 62
Query: 196 FFDR----TLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251
FDR ++ V+ +A Y + +S + D LL + + C+ +L
Sbjct: 63 VFDRMPAPSMHAYNVLLAASPPRYAMEIFSRLLAAD-LLPDRYSVPAMVRACT-ELPDAV 120
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL-----------------WNAMISG 294
G ++HGF ++LGL ++++++ + Y V L WN M++G
Sbjct: 121 LGAVIHGFAVRLGLM--ANVVVAAAFLDMYAKAVLLDDAVRVFDEMPERDAIVWNCMVTG 178
Query: 295 YAKNGYAEEAVKLF-----------------PKWMDYYIGKSE----------------Y 321
YA+ G A E +F P ++ +SE +
Sbjct: 179 YARAGRAAETFDIFSRAQVEAVNIVNGLQAVPSVLNICAKESELMKGREIHGMMVRCLAF 238
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG------ 375
+++ V LI+MYAKCG V+++ F ++DVV S M Y +HG GE+
Sbjct: 239 DSDIAVGNALINMYAKCGRVNVSQAVFSGMQERDVVSWSTMIHSYSIHGKGEQALKVYME 298
Query: 376 ---------WVLFHHI---------------------RKHGIEPRHQHYARVVDLLARAG 405
W+ F + + HG+ P +HYA +VDLL RAG
Sbjct: 299 MLSQGVKPNWITFTSVLSSCSHSGLVTEGQKIFESMTKVHGVHPATEHYACMVDLLGRAG 358
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSA 432
A I MP+E SV ALLSA
Sbjct: 359 AIEEAVGLIRKMPMEPCASVWGALLSA 385
>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Brachypodium distachyon]
Length = 734
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 100/415 (24%), Positives = 169/415 (40%), Gaps = 120/415 (28%)
Query: 139 AMISGYAKNGYAEEAVKLFPKWM-DYYIGKSEYRNNVIVNTV------------------ 179
AM++GYA ++EA +LF + + + + K+E+ +++ +
Sbjct: 189 AMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVK 248
Query: 180 ------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
L+ MYAK G +D A F+ + +++ + SAMI GY + SA
Sbjct: 249 DGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRM 308
Query: 226 FD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
F G E G CS D+ L +GK HG M+KLG E++ L+ + A
Sbjct: 309 FSQMHAAGFPPTEFTLVGVLNACS-DVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYA 367
Query: 278 VCR------------YQPNVTLWNAMISGYAKNGYAEEAVKL---------FP------- 309
C + ++ LW AM++G+ +NG E+A+ L FP
Sbjct: 368 KCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITS 427
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + I K + V + L MY+KCG+++ + F R +D
Sbjct: 428 LLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRD 487
Query: 356 VVMRSAMTVGYGLHGLG-----------------------------------EEGWVLFH 380
V+ +++ G+ +G G + GW F
Sbjct: 488 VIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFR 547
Query: 381 H-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I+ +G+ PR HYA +VD+L+RAG + A FI ++ I+ + R +L A +
Sbjct: 548 SMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESITIDHGTCLWRIVLGACR 602
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 52/270 (19%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
+NV V+T L++MY K G + A + FD ++ V +AM+ GY + S AF F +
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQM 210
Query: 230 LSN---EENEY-GTALDCSCDLEF-LEQGKIVHGFMIKLGL----ELESDLL-ISLTAVC 279
L +NE+ TA+ + + L G VHG ++K G+ +E+ L+ + A C
Sbjct: 211 LGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGC 270
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------- 320
+ N W+AMI+GY++NG AE AV++F + +E
Sbjct: 271 MDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNA 330
Query: 321 ---------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ V V + L+DMYAKCG + A F++ + D+V+
Sbjct: 331 CSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLW 390
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+AM G+ +G E+ +L+ + K G+ P
Sbjct: 391 TAMVTGHVQNGEFEQALMLYARMDKEGVFP 420
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 116/471 (24%), Positives = 189/471 (40%), Gaps = 111/471 (23%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIVFLDLY 61
T LVLKAC + + G ++HG + L F + Y+ G R D
Sbjct: 129 TLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFD-- 186
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYG-TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
+ R S DG + + DC + E+ I +I+ + E +
Sbjct: 187 RMPKRDSVSYNSMIDGYVKGGRIDLARVVFDC---IPLEERNLISWNSLIRGYAQSEDGI 243
Query: 121 LISLTAVCRY-QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
L++ + + ++ N+MI G K G E+A LF + + +++
Sbjct: 244 LVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPN---------RDIVSWAN 294
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239
+ID YAK G VD+A FD ++DVV +AM+ GY
Sbjct: 295 MIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGY------------------------ 330
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299
++ G + I G++ + + L+ N TL A+ S A+ G
Sbjct: 331 ----------VQNGYCMEALGIFYGMQSDGNFLLD---------NATLLIAL-SAIAQLG 370
Query: 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ ++ V + +I + + + + LIDMY+KCGS++ A M F+ +K V
Sbjct: 371 HIDKGVAI-----HRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHW 425
Query: 360 SAMTVGYGLHGLGE-----------------------------------EGWVLFHHIRK 384
+A+ G +HGLGE EG + F +R+
Sbjct: 426 NAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRR 485
Query: 385 -HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
H +EP+ QHY +VD+L RAG+ A F+ MP E + R+LLSA K
Sbjct: 486 VHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACK 536
>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 437
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 146/332 (43%), Gaps = 86/332 (25%)
Query: 140 MISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------KSE 169
M++GYA+ G+ EEA +++ + ++ + K+
Sbjct: 47 MLTGYARLGHLEEAYRVYEQMLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAG 106
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD 227
++ I+ LIDMYAKCG++ F D+DVV + +I G + + AF F+
Sbjct: 107 IHSDRILGNTLIDMYAKCGNIRQGHTMFTEMKDRDVVTWNIIIAGAARNGYFDEAFELFE 166
Query: 228 GL----LSNEENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC 279
+ L ++ Y L+ CS LEQG+I+H ++I+ GLEL+ L+++ + C
Sbjct: 167 AMREAGLKPDKVTYVCVLNVCSS----LEQGRILHSYIIEAGLELDLWVGTALLNMYSNC 222
Query: 280 RY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------- 314
R + N+ W ++I+ YA+ G E+A + K +
Sbjct: 223 RSLEDALQIFEKLPERNLVTWTSVIAAYAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVL 282
Query: 315 -----------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
++ KS + I+++ LIDMYAKCG D+A + ++DVV
Sbjct: 283 HVCATMGDLEKGKQVHDHMVKSGIATDQILDSTLIDMYAKCGRTDIAHQLLEIMDERDVV 342
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+A+ VG+ G +E F +++ G+ P
Sbjct: 343 SYTALIVGHVRQGRFQEALQTFSSMQRDGVLP 374
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 48/281 (17%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLL 230
+ V L++MY KCGS+ A FD ++D+ + M+ GY H A+ ++ +L
Sbjct: 9 STFVLNALLNMYMKCGSITDARQVFDNMRERDMFTWTMMLTGYARLGHLEEAYRVYEQML 68
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---- 279
+ + T L L LE+GK VH MIK G+ + L LI + A C
Sbjct: 69 EERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNIR 128
Query: 280 --------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-------- 314
+V WN +I+G A+NGY +EA +LF P + Y
Sbjct: 129 QGHTMFTEMKDRDVVTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNVCS 188
Query: 315 ----------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
YI ++ ++ V T L++MY+ C S++ A F++ ++++V +++
Sbjct: 189 SLEQGRILHSYIIEAGLELDLWVGTALLNMYSNCRSLEDALQIFEKLPERNLVTWTSVIA 248
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
Y G+ E+ W+ + + K GI Y V+ + A G
Sbjct: 249 AYAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHVCATMG 289
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 88/349 (25%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVC-------YLF 47
+G T +L C +L SL G +VH + G + C +F
Sbjct: 75 DGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNIRQGHTMF 134
Query: 48 DGLFDRTIVFLDLYHLWSRTEW---SAFGSFDGL----LSNEENEYGTALD-CSCDLEFL 99
+ DR +V ++ + AF F+ + L ++ Y L+ CS L
Sbjct: 135 TEMKDRDVVTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNVCSS----L 190
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGY 144
EQG+I+H ++I+ GLEL+ L+++ + CR + N+ ++I+ Y
Sbjct: 191 EQGRILHSYIIEAGLELDLWVGTALLNMYSNCRSLEDALQIFEKLPERNLVTWTSVIAAY 250
Query: 145 AKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYRNNV 174
A+ G E+A + K + ++ KS +
Sbjct: 251 AQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHVCATMGDLEKGKQVHDHMVKSGIATDQ 310
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHEWSAFGSF 226
I+++ LIDMYAKCG D+A + ++DVV +A+IVG+ L +S+
Sbjct: 311 ILDSTLIDMYAKCGRTDIAHQLLEIMDERDVVSYTALIVGHVRQGRFQEALQTFSSMQR- 369
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
DG+L N G C+ L L +G+ +H +IK GL +S L +L
Sbjct: 370 DGVLPNTVTFVGVLKACT-GLGSLVEGRRIHASIIKAGLAQDSSLKYAL 417
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 136/309 (44%), Gaps = 74/309 (23%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RY 130
+ T L L LE+GK VH MIK G+ + L LI + A C
Sbjct: 79 FTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNIRQGHTMFTEMK 138
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDY------------------ 163
+V N +I+G A+NGY +EA +LF P + Y
Sbjct: 139 DRDVVTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNVCSSLEQGRILHS 198
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE- 219
YI ++ ++ V T L++MY+ C S++ A F++ ++++V +++I Y G+ E
Sbjct: 199 YIIEAGLELDLWVGTALLNMYSNCRSLEDALQIFEKLPERNLVTWTSVIAAYAQAGIPEK 258
Query: 220 -WSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LI 273
W + +G++++ + Y T L + LE+GK VH M+K G+ + L LI
Sbjct: 259 AWIFYEKMLKEGIVAD-KFAYTTVLHVCATMGDLEKGKQVHDHMVKSGIATDQILDSTLI 317
Query: 274 SLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321
+ A C + +V + A+I G+ + G +EA++ F S
Sbjct: 318 DMYAKCGRTDIAHQLLEIMDERDVVSYTALIVGHVRQGRFQEALQTFS---------SMQ 368
Query: 322 RNNVIVNTV 330
R+ V+ NTV
Sbjct: 369 RDGVLPNTV 377
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 31/195 (15%)
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------ 317
W M++GYA+ G+ EEA +++ + ++ +
Sbjct: 44 WTMMLTGYARLGHLEEAYRVYEQMLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMI 103
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
K+ ++ I+ LIDMYAKCG++ F D+DVV + + G +G +E +
Sbjct: 104 KAGIHSDRILGNTLIDMYAKCGNIRQGHTMFTEMKDRDVVTWNIIIAGAARNGYFDEAFE 163
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM 437
LF +R+ G++P Y V+++ + +I+ +EL L V ALL+ +
Sbjct: 164 LFEAMREAGLKPDKVTYVCVLNVCSSLEQGRILHSYIIEAGLELDLWVGTALLNMYS-NC 222
Query: 438 QQWENMLQTIRGIDE 452
+ E+ LQ + E
Sbjct: 223 RSLEDALQIFEKLPE 237
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 150/369 (40%), Gaps = 85/369 (23%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKSEY 170
+V N MISGY ++ +E++KLF K D +GK +
Sbjct: 184 DVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH 243
Query: 171 R--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
R ++ LIDMYA CG +D A FD +DV+ +A++ G+ +
Sbjct: 244 RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGF-----TN 298
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
G GL N D + +F+ ++ G++ + L + A +
Sbjct: 299 LGQV-GLARN-------YFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAA-NIK 349
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
P+ ++++ A G E +W+ YI K+E + + V LIDMY CG+V+
Sbjct: 350 PDEFTMVSILTACAHLGALE-----LGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVE 404
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------ 384
A F+ +D + +A+ G ++G GEE +F + K
Sbjct: 405 KAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACT 464
Query: 385 ------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
HGIEP HY +VDLL RAG+ A + I NMP++ V
Sbjct: 465 HSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVW 524
Query: 427 RALLSAWKI 435
+LL A ++
Sbjct: 525 GSLLGACRV 533
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 33/184 (17%)
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------------------- 321
PN +WN MI GY++ G AV ++ + ++ + EY
Sbjct: 82 PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141
Query: 322 ---------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+NV V LI +Y+ G V +A FDR+ DVV + M GY
Sbjct: 142 HDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQF 201
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSN---HAFKFIMNMPIELRLSVRRAL 429
+E LF + + + P V+ ++ N +++ ++ IE + AL
Sbjct: 202 DESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENAL 261
Query: 430 LSAW 433
+ +
Sbjct: 262 IDMY 265
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 116/436 (26%), Positives = 188/436 (43%), Gaps = 57/436 (13%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-----LFDRTIVFLDL 60
V P T ++ AL +G VH Q+ LGF Y F G ++ + + D
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGF-GAYAFVGSPLVDMYAKMGLIRDA 200
Query: 61 YHLWSRTEWSAFGSFD----GLLSNEENEYGTAL-DCSCDLEFLEQGKIVHGFMIKLGLE 115
++ E ++ GLL + E L D + + +V G + + GL+
Sbjct: 201 RRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTG-LTQNGLQ 259
Query: 116 LES-DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174
LE+ D+ + A T + + + A E K + YI ++ Y +NV
Sbjct: 260 LEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEE------GKQIHAYITRTWYEDNV 313
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-----AFG--SFD 227
V + L+DMY+KC S+ LA F R ++++ +AMIVGYG + S AF D
Sbjct: 314 FVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMD 373
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
G+ ++ G+ + +L LE+G H + GL RY +T+
Sbjct: 374 GI-KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL-------------MRY---ITV 416
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG----SVDL 343
NA+++ Y K G E+A +LF + M ++ + + T L+ YA+ G ++DL
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDE-MSFH--------DQVSWTALVTGYAQFGKAKETIDL 467
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLA 402
L D V + GL E+G F ++K HGI P HY ++DL +
Sbjct: 468 FEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYS 527
Query: 403 RAGYSNHAFKFIMNMP 418
R+G A +FI MP
Sbjct: 528 RSGRFKEAEEFIKQMP 543
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 183/472 (38%), Gaps = 115/472 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T +L AC L +L +G +H G + +G +D+Y
Sbjct: 352 PNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEG------SVIDMY------ 399
Query: 68 EWSAFGSFD---GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
S GS+D + EN+ TA+ ++ +GK+ + ++ +
Sbjct: 400 --SKCGSYDYAEKVFXKAENK-NTAMWNEMIAAYVNEGKVEDALGLLRSMQKDG------ 450
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
++P+V N ++SG+A+NG +A +L + + + + NV+ VLI +
Sbjct: 451 -----WKPDVITYNTILSGHARNGLKTQAXELLSEMVQMGL-----KPNVVSFNVLISGF 500
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT----- 239
+ G A F +M+S DG NE
Sbjct: 501 QQSGLSYEALKVFR-------IMQSPS---------------DGCNPNEVLNLSMRPNPI 538
Query: 240 ----ALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQP--------- 283
AL DL QGK +HG+ ++ G E S L+ + A C
Sbjct: 539 TITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRI 598
Query: 284 ---NVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYYI-------------GK 318
N WNA+++GY N EEA+KLF P + + I G+
Sbjct: 599 DGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGR 658
Query: 319 -----------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
E +N + + LIDMYAKCGS+ A FD ++KDV + +AM +
Sbjct: 659 GLHGYAAKCQLDELKN--AIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFS 716
Query: 368 LHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
+HG+ + +F + GI P H + ++ AR G +K+ +M I
Sbjct: 717 VHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYFNSMEI 768
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 105/467 (22%), Positives = 185/467 (39%), Gaps = 96/467 (20%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFS--------LGFLVCYLFDGLFDRTIVFLD 59
P+ P +LKAC A+ +G VHG + +G + + + D
Sbjct: 181 PDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSV 240
Query: 60 LYHLWSR--TEWSAFGSF---DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 114
+ + R W+A S +GL ++ + + + ++ GF +
Sbjct: 241 FHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEI 300
Query: 115 ELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY----------- 163
+L + L + QP V N +ISG +NGY E+A+ +F + + Y
Sbjct: 301 DLALETLEEMPER-GLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIAS 359
Query: 164 -----------YIGKSEYR--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
+GK+ + NV V +IDMY+KCGS D A F + +K+
Sbjct: 360 ILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKN 419
Query: 205 VVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 264
M + MI Y ++E + L S +++ + + + I+ G + G
Sbjct: 420 TAMWNEMIAAY-VNEGKVEDALGLLRSMQKDGWKP--------DVITYNTILSGHA-RNG 469
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF---------------- 308
L+ ++ L+S +PNV +N +ISG+ ++G + EA+K+F
Sbjct: 470 LKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVL 529
Query: 309 ---------------PKWMDY-----------YIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
P D Y ++ + N+ V++ L+DMYAKC +D
Sbjct: 530 NLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMD 589
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
A F R ++ V +A+ GY + EE LF + G++P
Sbjct: 590 SANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGLQP 636
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 40/284 (14%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
++ + ++V V LI Y+ CG + + F ++DVV +A+I Y
Sbjct: 208 FVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAY-------- 259
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
+GL ++ + + + ++ GF ++L + L + QP
Sbjct: 260 -MEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPER-GLQP 317
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----------------------YIGKSEY 321
V WN +ISG +NGY E+A+ +F + + Y +GK+ +
Sbjct: 318 TVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIH 377
Query: 322 R--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
NV V +IDMY+KCGS D A F + +K+ M + M Y G E
Sbjct: 378 XIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVE 437
Query: 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
+ L ++K G +P Y ++ AR G A + + M
Sbjct: 438 DALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEM 481
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%)
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
++ + ++V V LI Y+ CG + + F ++DVV +A+ Y GL +E
Sbjct: 208 FVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDE 267
Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+FH ++ G++P ++ ++ AR G + A + + MP
Sbjct: 268 AKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMP 311
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 139/341 (40%), Gaps = 68/341 (19%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV AMISGYA+NG A KLF + RN V +L+ Y + G V+
Sbjct: 204 NVVSWTAMISGYAQNGEVNLARKLFEVMPE--------RNEVSWTAMLVG-YIQAGHVED 254
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A F+ + V +AM+VG+G +A F+ + ++ + + EFL
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFL 314
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ M+ G+ +IS+ VC A AV + +
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVC---------------------AALAVLDYGR 353
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ + + + +V + LI MY KCG++D A F KD+VM ++M GY HG
Sbjct: 354 EVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHG 413
Query: 371 LGEEGWVLFHHIRKHG------------------------------------IEPRHQHY 394
LGE+ +FH +R G I P +HY
Sbjct: 414 LGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHY 473
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +VDLL R+G AF I NMP+E + AL+ A ++
Sbjct: 474 SCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRM 514
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 67/255 (26%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ P+V +++ GY ++G +A++LF + + N + TVL+ G
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE---------RNHVSYTVLLGGLLDAGR 158
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
V+ A FD D+DVV +AM+ GY C
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGY-----------------------------CQAGR 189
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+ + + + M K NV W AMISGYA+NG A KLF
Sbjct: 190 ITEARALFDEMPKR--------------------NVVSWTAMISGYAQNGEVNLARKLFE 229
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+ RN V +L+ Y + G V+ A F+ + V +AM VG+G
Sbjct: 230 VMPE--------RNEVSWTAMLVG-YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQR 280
Query: 370 GLGEEGWVLFHHIRK 384
G+ + +F +R+
Sbjct: 281 GMVDAAKTVFEKMRE 295
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+V W AM+SGY + G EA LF + + NV+ T +I YA+ G V+L
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMP---------KRNVVSWTAMISGYAQNGEVNL 223
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
A F+ +++ V +AM VGY G E+ LF+ + +H +
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV 267
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+ P+V + +++ GY ++G +A++LF + + N + TVL+ G
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE---------RNHVSYTVLLGGLLDAGR 158
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
V+ A FD D+DVV +AM GY G E LF + K + + ++
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISG 214
Query: 401 LARAGYSNHAFKFIMNMP 418
A+ G N A K MP
Sbjct: 215 YAQNGEVNLARKLFEVMP 232
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 116/493 (23%), Positives = 187/493 (37%), Gaps = 151/493 (30%)
Query: 69 WSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
W A +F ++S + L +E G+ VH F++KLGL
Sbjct: 329 WDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGL---------- 378
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
+ C V + N+++ Y K G AE A +F + +V V++ +Y
Sbjct: 379 -SSC-----VPVANSVLYMYGKCGDAETARAVFERMQ---------VRSVSSWNVMVSLY 423
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSNEENE-----Y 237
G ++LA F+ +++ +V + +I GY + + A F +LS E
Sbjct: 424 THQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTV 483
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL------------------------- 272
+ L +L L+ GK +H ++++ G+ S ++
Sbjct: 484 TSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVV 543
Query: 273 -----ISLTAVCR------------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
IS TA+ +V W AMI GY +NG +EA++LF
Sbjct: 544 ADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFR 603
Query: 310 K------------------------WMDY------YIGKSEYRNNVIVNTVLIDMYAKCG 339
++DY +S +V V+ +I +YA+ G
Sbjct: 604 SMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSG 663
Query: 340 SVDLAPMFFDRTL-DKDVVMRSAMTVGYGLHGLGEEGWVLFH----------HI------ 382
SV LA FD+ K+ + ++M V HGLGE+ VLF HI
Sbjct: 664 SVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVL 723
Query: 383 --------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
+HGI P+ HYA +VDL ARAG A +FI MP+
Sbjct: 724 SACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPD 783
Query: 423 LSVRRALLSAWKI 435
V +LL+A ++
Sbjct: 784 TVVWGSLLAACRV 796
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 31/207 (14%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDG 228
R N L+ +YAK G + A + F D+D V + MIVG W A +F
Sbjct: 278 RRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLD 337
Query: 229 LLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
++S + L +E G+ VH F++KLGL + C
Sbjct: 338 MVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGL-----------SSC----- 381
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
V + N+++ Y K G AE A +F + +V V++ +Y G ++LA
Sbjct: 382 VPVANSVLYMYGKCGDAETARAVFERMQ---------VRSVSSWNVMVSLYTHQGRMELA 432
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGL 371
F+ +++ +V + + GY +GL
Sbjct: 433 VSMFENMVERSIVSWNTIIAGYNQNGL 459
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 115/501 (22%), Positives = 192/501 (38%), Gaps = 165/501 (32%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNVTLRNAMISG 143
L +G VHG ++K+G E + + LI C + NV ++I G
Sbjct: 155 LTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGG 214
Query: 144 YAKNGYAEEAVKLF----------------------PKWMDYYIGKS--------EYRNN 173
YAK G +EAV LF K D +G+ E N
Sbjct: 215 YAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVN 274
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLL 230
++ L+DMY KCG++D A FD +DK++V+ + ++ Y GL +L
Sbjct: 275 ALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAR-EVLAVLGEML 333
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRYQP 283
+ + +A+ +L+ + GK HG++++ GLE ++ +I++ C Q
Sbjct: 334 KHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQE 393
Query: 284 ----------NVTL--WNAMISGYAKNGYAE----------------------------- 302
N T WN++I+G+ +NG E
Sbjct: 394 MACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESM 453
Query: 303 --EAVKLF------------------------------PKWMDYYIGKSEYRNNVIVNTV 330
EA++LF KW+ YI K + ++ + T
Sbjct: 454 FKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTA 513
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDV---------------------------------- 356
L+DM+A+CG A F++ + +DV
Sbjct: 514 LVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPD 573
Query: 357 -VMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
V+ A+ GL E+GW +F ++ +GI P+ HY +VDLL RAG + A I
Sbjct: 574 GVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLI 633
Query: 415 MNMPIELRLSVRRALLSAWKI 435
+M +E + +LL+A ++
Sbjct: 634 NSMQMEPNDVIWGSLLAACRV 654
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/477 (24%), Positives = 189/477 (39%), Gaps = 146/477 (30%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLIS----------LTAVCRYQPNVTLR-----NAMISG 143
L+ G+ VH ++KLG E + + S ++ C N+ +R NAMISG
Sbjct: 155 LDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISG 214
Query: 144 YAKNGYAEEAVKLFPKW------MD------------------------YYIGKSEYRNN 173
+ NG EA+++F + MD Y K +
Sbjct: 215 FYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFD 274
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLS 231
+ V LI+MYAK G + A F++ +D+V ++++ + ++ A G +
Sbjct: 275 LFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVY----- 329
Query: 232 NEENEYGTALD---------CSCDLEFLEQGKIVHGFM---------IKLG---LELESD 270
N+ + G D + +L + +HGF+ I LG +++ +
Sbjct: 330 NKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAK 389
Query: 271 L--LISLTAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG--------- 317
L + S V P +V WN++I+GY++NG A EA+ ++ M YY G
Sbjct: 390 LGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSS-MRYYSGAVPNQGTWV 448
Query: 318 -----------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
K+ ++ V+T L+DMY KCG + A F +
Sbjct: 449 SILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQ 508
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------- 391
V +A+ +GLHG G + LF ++ G++P H
Sbjct: 509 SSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCF 568
Query: 392 -------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDL RAG+ AF F+ NMP+ +SV ALL A +I
Sbjct: 569 QLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRI 625
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/358 (20%), Positives = 138/358 (38%), Gaps = 85/358 (23%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWM-------DYY---------------------IGKSE 169
N+MIS YA+ G+ AV F +++ D+Y + K
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLG 169
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFD 227
+ +V + I Y++ G V LA FD + +D+ +AMI G+ L+ A FD
Sbjct: 170 FECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFD 229
Query: 228 GL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
+ +S + + L L+ + G ++H + IKLGLE DL + + Y
Sbjct: 230 EMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEF--DLFVCNALINMYAK 287
Query: 284 -----------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMD------------- 313
++ WN++++ + +N A+ ++ K
Sbjct: 288 FGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSL 347
Query: 314 ------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ + + +++ + +IDMYAK G +D A F+ KD
Sbjct: 348 ASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKD 407
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFK 412
V+ +++ GY +GL E ++ +R + G P + ++ ++ G K
Sbjct: 408 VISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMK 465
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 52/250 (20%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAF 223
GK++ ++ ++ LI+ YA G + A + FD+ KDV ++MI Y H +A
Sbjct: 70 GKTQ---SIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAV 126
Query: 224 GSFDGLLSNE--ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS------- 274
F+ LS ++++ T L+ G+ VH ++KLG E + + S
Sbjct: 127 DCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSR 186
Query: 275 ---LTAVCRYQPNVTL-----WNAMISGYAKNGYAEEAVKLFPKW------MD------- 313
++ C N+ + WNAMISG+ NG EA+++F + MD
Sbjct: 187 FGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSL 246
Query: 314 -----------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
Y K ++ V LI+MYAK G + A F++ +D+
Sbjct: 247 LPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDI 306
Query: 357 VMRSAMTVGY 366
V +++ +
Sbjct: 307 VSWNSLLAAF 316
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 28/128 (21%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWM-------DYY--------------------- 315
+V WN+MIS YA+ G+ AV F +++ D+Y
Sbjct: 105 DVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCL 164
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
+ K + +V + I Y++ G V LA FD + +D+ +AM G+ L+G E
Sbjct: 165 VLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEA 224
Query: 376 WVLFHHIR 383
+F +R
Sbjct: 225 LEVFDEMR 232
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 140/590 (23%), Positives = 221/590 (37%), Gaps = 163/590 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTI 55
V+P+ T P V+KAC L MG V+ QI +GF + Y GL R
Sbjct: 102 VSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRAR 161
Query: 56 VFLDLYHLWSRTEW-------SAFGSFDGLLS-----------NEENEYGTALDCSCDLE 97
D + W S+ G ++ L + + L +L
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLL 221
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQPNVTLR--------------NAMIS 142
++QG+ +HGF +K G+ + L A+ +++ R N MI
Sbjct: 222 VVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMIC 281
Query: 143 GYAKNGYAEEAVKLF-----------------------------PKWMDYYIGKSEYRNN 173
GY K EE+V++F K++ Y+ K+ +
Sbjct: 282 GYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLE 341
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----GLHEWSAFGSFDGL 229
V +LID+YAKCG + A F+ KD V +++I GY L E A F +
Sbjct: 342 STVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLME--AMKLFKMM 399
Query: 230 LSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY- 281
+ EE Y + S L L+ GK +H IK G+ ++ S+ LI + A C
Sbjct: 400 MIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEV 459
Query: 282 -----------QPNVTLWNAMISGYAKNG------------------------------Y 300
+ WN +IS + G
Sbjct: 460 GDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMC 519
Query: 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
A A K K + + + Y + + + LI+MY+KCG ++ + F+R +DVV +
Sbjct: 520 ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWT 579
Query: 361 AMTVGYGLHGLGE-----------------------------------EGWVLFHHIRKH 385
M YG++G GE EG F ++ H
Sbjct: 580 GMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTH 639
Query: 386 -GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I+P +HYA VVDLL+R+ + A +FI MPI+ S+ ++L A +
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACR 689
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 56/224 (25%)
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI---------------SLTAVCRYQP- 283
AL S +L L + +H +I LGL+ SD SL+ R P
Sbjct: 13 ALSSSSNLNELRR---IHALVISLGLD-SSDFFSGKLIDKYSHFREPASSLSVFRRVSPA 68
Query: 284 -NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------------------- 321
NV LWN++I ++KNG EA++ + K + + +Y
Sbjct: 69 KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV 128
Query: 322 ---------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+++ V L+DMY++ G + A FD +D+V +++ GY HG
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVD-----LLARAGYSNHAF 411
EE ++H ++ I P + V+ L+ + G H F
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGF 232
>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 768
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 126/542 (23%), Positives = 211/542 (38%), Gaps = 164/542 (30%)
Query: 46 LFDGLFDRTIV---FLDLYHLWSRTEWSAFGSFDGLL----SNEENEYGTALDCSCDLEF 98
+FDG+ DR V + H + A G F +L + +E G+A+ +L
Sbjct: 102 VFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGD 161
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN-----------------AMI 141
L G+ VH IK + L++ V Y + ++ + ++I
Sbjct: 162 LGLGRQVHAQAIKS--DNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSII 219
Query: 142 SGYAKNGYAEEAVKLFPKWM--------DYYIGKSEYRNNVIVNTV-------------- 179
+G A+ G +A+ +F + + +++ G +V++N++
Sbjct: 220 AGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYK 279
Query: 180 ----------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
L DMYA+C +D A F R D+V +++I + S DGL
Sbjct: 280 LDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAF---------SADGL 330
Query: 230 LSN-----EENEYGT---------ALDCSC-DLEFLEQGKIVHGFMIKLGLE---LESDL 271
LS E Y + AL C+C + L QG+ +H +++KLGL + +
Sbjct: 331 LSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVMVCNS 390
Query: 272 LISLTAVCRYQP------------NVTLWNAMISGYAKNGYAEEAVKLF----------- 308
LIS+ C P +V WN++++ ++ + E+ KLF
Sbjct: 391 LISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLD 450
Query: 309 -------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
K + Y K ++ I++ LID YAKCGS+D A F+
Sbjct: 451 RISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFE 510
Query: 350 -RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------- 391
+DV S++ VGY G +E LF +R G++P H
Sbjct: 511 IMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVD 570
Query: 392 -------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+H + V+DLLARAG + A KF+ MP E + + LL+A
Sbjct: 571 EGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAA 630
Query: 433 WK 434
+
Sbjct: 631 SR 632
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 116/279 (41%), Gaps = 57/279 (20%)
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAF 223
G + N I++ LI MY +C + D A M FD LD++ V +A+I + + A
Sbjct: 72 GAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAM 131
Query: 224 GSFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
G F +L + +E G+A+ +L L G+ VH IK + L++ V
Sbjct: 132 GLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKS--DNGGHLIVQNALVT 189
Query: 280 RYQPNVTL-----------------WNAMISGYAKNGYAEEAVKLFPKWM--------DY 314
Y + ++ W ++I+G A+ G +A+ +F + + ++
Sbjct: 190 MYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEF 249
Query: 315 YIGKSEYRNNVIVNTV------------------------LIDMYAKCGSVDLAPMFFDR 350
+ G +V++N++ L DMYA+C +D A F R
Sbjct: 250 HFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYR 309
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
D+V +++ + GL E VLF +R ++P
Sbjct: 310 IESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKP 348
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 112/296 (37%), Gaps = 80/296 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
M+ + + P+G T +L ACV +L G +H + LG +VC ++ R +
Sbjct: 341 MRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLD 400
Query: 57 F---LDLYH--------LWS---------RTEWSAFGSFDGLLSN----EENEYGTALDC 92
F +D++H W+ R F F L S+ + L
Sbjct: 401 FPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSA 460
Query: 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA------------- 139
S +L + E K VH + K+GL SD ++S + Y +L +A
Sbjct: 461 SAELGYFEMAKQVHAYAFKVGLV--SDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDV 518
Query: 140 -----MISGYAKNGYAEEAVKLFPKWMD---------------------------YYIGK 167
+I GYA+ GYA+EA+ LF + + YY
Sbjct: 519 FSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVDEGCYYYSI 578
Query: 168 SEYRNNVIVN----TVLIDMYAKCGSVDLAPMFFDR-TLDKDVVMRSAMIVGYGLH 218
E ++ + +ID+ A+ G + A F D+ + D++M + ++ H
Sbjct: 579 MEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTH 634
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 192/476 (40%), Gaps = 143/476 (30%)
Query: 93 SCDLEFLE-QGKIVHGFMIKLGLELE---SDLLISLTAVCR--------YQPNVTLR--- 137
SC + E GK + ++K+G + + + LI++ AVC + + L
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194
Query: 138 -NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
N+M++GY G EEA ++ + + NVI + +I ++ K G+V+ A
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRMPE---------RNVIASNSMIVLFGKKGNVEEACKL 245
Query: 197 FDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSN----EENEYGTALDCSCDLEFL 250
F+ KD+V SA+I Y +E A F + +N +E + L L +
Sbjct: 246 FNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVV 305
Query: 251 EQGKIVHGFMIKLGLELESDL---LISLTAVCR--------YQPNVTL----WNAMISGY 295
GK+VHG ++K+G+E +L LI + + C + + L WN+MISGY
Sbjct: 306 ITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGY 365
Query: 296 AK--------------------------NGYAE-----EAVKLFP--------------- 309
K +GYA+ E + LF
Sbjct: 366 VKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILV 425
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
KW+ YI K+ + N+I+ T LI+MY K G V+ A F +K
Sbjct: 426 SVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEK 485
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------------RH- 391
V +A+ +G ++GL ++ F +++HG+ P RH
Sbjct: 486 GVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHF 545
Query: 392 -------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HY +VDLL RAG A + I +MP+ +S ALL A K
Sbjct: 546 NSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACK 601
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 169/398 (42%), Gaps = 85/398 (21%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLR 137
+LE + GK +HGF +++G E +D+ I+ + + Y + N+
Sbjct: 374 ELECFKAGKEIHGFSMRMGTE--TDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSW 431
Query: 138 NAMISGYAKNGYAEEAVKLF---------PKWMDY-----------YIGKSE-------- 169
NAMI+ YA N EA++ P + + ++G +
Sbjct: 432 NAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVR 491
Query: 170 --YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----LHEWSA 222
+++ V+ LIDMYAKCG + A F+ T KD V + +I+GY L +
Sbjct: 492 IGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNL 550
Query: 223 FGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F L + + +C +L L+QGK VHG + L L S L +S
Sbjct: 551 FSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHG--VALRNHLYSHLFVS------- 601
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
N+++ Y K G + A +LF + + +++ NT+++ Y G +
Sbjct: 602 -------NSLLDFYTKCGRIDIACRLFNQIL--------FKDVASWNTMILG-YGMIGEL 645
Query: 342 DLAPMFF----DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397
+ A F D T+ D+V A+ GL E GW F + +EP HY +
Sbjct: 646 ETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCM 705
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VDLL RAG+ A K I +PI ++ ALL A +I
Sbjct: 706 VDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRI 743
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 118/521 (22%), Positives = 187/521 (35%), Gaps = 140/521 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFL----------------------VCYLFDGLFD- 52
+L C + SLL +VH GFL C LF+ F
Sbjct: 60 LLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQN 119
Query: 53 -RTIVFLDLYHLWSRTEWSAFGSFDGLLS-NEENEYGTALD----------CSCDLEFLE 100
RT + W+ G+FDG + N G LD CS +
Sbjct: 120 CRTAFLWNTLIRAHSIAWN--GTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDIC- 176
Query: 101 QGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYA 145
+G VHG + KLG + + + L+ L C + + +V N +I +
Sbjct: 177 KGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLS 236
Query: 146 KNGYAEEA--------------------VKLFP-----------KWMDYYIGKSEYRNNV 174
NG EA + L P + + Y K + V
Sbjct: 237 VNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQV 296
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF----DG 228
L+D Y KCGSV F+ T++K+ V +++I G W A +F D
Sbjct: 297 TTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDA 356
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------- 281
+ L +LE + GK +HGF +++G E+D+ I+ + + Y
Sbjct: 357 GAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMG--TETDIFIANSLIDMYAKSGHST 414
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-------- 314
+ N+ WNAMI+ YA N EA++ P + +
Sbjct: 415 EASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACA 474
Query: 315 ---YIGKSE----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
++G + +++ V+ LIDMYAKCG + A F+ T KD V +
Sbjct: 475 RLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNI 533
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ +GY + LF +R G +P + V+ A
Sbjct: 534 LIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACA 574
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 139/322 (43%), Gaps = 66/322 (20%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW------MDYY------------------------IGK 167
MI+G +NG EA+ LF MD Y I +
Sbjct: 239 TTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIR 298
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGS 225
S Y +NV V + L+DMY KC SV A F R +K+VV +AM+VGYG + +S A
Sbjct: 299 SGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRV 358
Query: 226 FDGLLSN--EENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F + N E +++ G+ + +L LE+G H + G LIS
Sbjct: 359 FCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG-------LISF------ 405
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG-- 339
+T+ NA+I+ Y K G E++ +LF + +R+ V T L+ YA+ G
Sbjct: 406 ---ITVSNALITLYGKCGSIEDSNQLFDEM--------SFRDEVSW-TALVSGYAQFGKA 453
Query: 340 --SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYAR 396
++DL + L D V A+ GL E G F + K HGI P HY
Sbjct: 454 NETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTC 513
Query: 397 VVDLLARAGYSNHAFKFIMNMP 418
++DL RAG A FI MP
Sbjct: 514 MIDLFGRAGRLEEAKNFINKMP 535
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY----- 130
++ ++ +G+ L L L++GK +H +I+ G L+ + CR
Sbjct: 266 MAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAE 325
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM-------DYYIGK--------- 167
NV AM+ GY +NG++EEAV++F D+ +G
Sbjct: 326 AVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLA 385
Query: 168 --------------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
S + + V+ LI +Y KCGS++ + FD +D V +A++
Sbjct: 386 SLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVS 445
Query: 214 GYG 216
GY
Sbjct: 446 GYA 448
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 31/129 (24%)
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDY-------------------------------YI 316
WN++ISGY G EAVK + M I
Sbjct: 105 WNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQI 164
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
K + V V + L+DMYAK G V +A FD +++VVM + M G G+ ++
Sbjct: 165 VKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSK 224
Query: 377 VLFHHIRKH 385
LFH +++
Sbjct: 225 RLFHGMKER 233
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 47/237 (19%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEA 153
C+ Q K +H +IK SLT P L N +I+ Y+K G A
Sbjct: 16 CETRNQTQAKKLHCLIIK-----------SLT-----NPETFLYNNLINAYSKLGNITYA 59
Query: 154 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+F K N+ NT+L Y+K G + F ++D V +++I
Sbjct: 60 RHVFDKM--------PQPNSFSWNTML-SAYSKSGDLSTMQEIFSIMPNRDGVSWNSLIS 110
Query: 214 GYG-----LHEWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266
GY + + S DG+L+ + T L ++ G+ +HG ++K G
Sbjct: 111 GYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFG 170
Query: 267 ----LESDLL-----ISLTAVCRY------QPNVTLWNAMISGYAKNGYAEEAVKLF 308
+ S L+ + L +V + NV ++N MI+G ++G +++ +LF
Sbjct: 171 AYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLF 227
>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 117/466 (25%), Positives = 183/466 (39%), Gaps = 123/466 (26%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
V PNG T +L+AC +LL PR VHGQI GF +F + +D+Y
Sbjct: 107 VPPNGFTFTFLLRAC----ALLGLPRPCGCVHGQIVRCGF-----GSDVFVQN-ALMDVY 156
Query: 62 H--LWSRTEWSAFGSFDGLLSNEENEYGTAL-------DCSCDLEFLE---QGKIVHGFM 109
H +A FD ++ + + + + D + + F E + +V
Sbjct: 157 HRCGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNT 216
Query: 110 IKLGLELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 167
+ G D+ ++ AV P N N MISGYA +G E A +F + MD
Sbjct: 217 VVAGFARMGDM-VTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR-MD----- 269
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+ +V+ T ++ YAK G +D A FD K++V +AMI GY
Sbjct: 270 ---QKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGY------------ 314
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
N + Y AL + L LE R++P+
Sbjct: 315 ----NHNSRYDEALR-TFQLMMLEG---------------------------RFRPDEAT 342
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+++S A+ G E + W+ +IGKS V + LIDM+AKCG V A
Sbjct: 343 LVSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSI 397
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLG----------------------------------- 372
F + + ++ + M G+ +GL
Sbjct: 398 FYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLL 457
Query: 373 EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
+EGW +F+ + ++ I+PR +HY +VDLL RA + K I +
Sbjct: 458 QEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL 503
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 114/275 (41%), Gaps = 38/275 (13%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDL---APMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
I + + ++V V L+D+Y +CG A FD +D+DVV ++ IVG +
Sbjct: 137 IVRCGFGSDVFVQNALMDVYHRCGGGGGVGAARQVFDEMVDRDVVSWNS-IVGVYMSSGD 195
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
A G+ E + + +V + G D+ ++ AV
Sbjct: 196 ATGAMGFF------------------EAMPERNVVSWNTVVAGFARMGDM-VTARAVFDR 236
Query: 282 QP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
P N WN MISGYA +G E A +F + MD + +V+ T ++ YAK G
Sbjct: 237 MPSRNAVSWNLMISGYATSGDVEAARSVFDR-MD--------QKDVVSWTAMVSAYAKIG 287
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVV 398
+D A FD K++V +AM GY + +E F + G P VV
Sbjct: 288 DLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 347
Query: 399 DLLARAG---YSNHAFKFIMNMPIELRLSVRRALL 430
A+ G Y N FI I L +++ AL+
Sbjct: 348 SACAQLGSVEYCNWISSFIGKSNIHLTVALGNALI 382
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 139/341 (40%), Gaps = 68/341 (19%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV AMISGYA+NG A KLF + RN V +L+ Y + G V+
Sbjct: 204 NVVSWTAMISGYAQNGEVNLARKLFEVMPE--------RNEVSWTAMLVG-YIQAGHVED 254
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A F+ + V +AM+VG+G +A F+ + ++ + + EFL
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL 314
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ M+ G+ +IS+ VC A AV + +
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVC---------------------AALAVLDYGR 353
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ + + + +V + LI MY KCG++D A F KD+VM ++M GY HG
Sbjct: 354 EVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHG 413
Query: 371 LGEEGWVLFHHIRKHG------------------------------------IEPRHQHY 394
LGE+ +FH +R G I P +HY
Sbjct: 414 LGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHY 473
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +VDLL R+G AF I NMP+E + AL+ A ++
Sbjct: 474 SCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRM 514
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 67/253 (26%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ P+V +++ GY ++G +A++LF + + N + TVL+ G
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE---------RNHVSYTVLLGGLLDAGR 158
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
V+ A FD D+DVV +AM+ GY C
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGY-----------------------------CQAGR 189
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+ + + + M K NV W AMISGYA+NG A KLF
Sbjct: 190 ITEARALFDEMPKR--------------------NVVSWTAMISGYAQNGEVNLARKLFE 229
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+ RN V +L+ Y + G V+ A F+ + V +AM VG+G
Sbjct: 230 VMPE--------RNEVSWTAMLVG-YIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQR 280
Query: 370 GLGEEGWVLFHHI 382
G+ + +F +
Sbjct: 281 GMVDAAKTVFEKM 293
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+V W AM+SGY + G EA LF + + NV+ T +I YA+ G V+L
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMP---------KRNVVSWTAMISGYAQNGEVNL 223
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
A F+ +++ V +AM VGY G E+ LF+ + +H +
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV 267
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+ P+V + +++ GY ++G +A++LF + + N + TVL+ G
Sbjct: 108 FPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE---------RNHVSYTVLLGGLLDAGR 158
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
V+ A FD D+DVV +AM GY G E LF + K + + ++
Sbjct: 159 VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTAMISG 214
Query: 401 LARAGYSNHAFKFIMNMP 418
A+ G N A K MP
Sbjct: 215 YAQNGEVNLARKLFEVMP 232
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 138/341 (40%), Gaps = 68/341 (19%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV AM+SGYA+NG A KLF + RN V +L Y + G ++
Sbjct: 204 NVVSWTAMVSGYAQNGQVNLARKLFEVMPE--------RNEVSWTAMLFG-YIQAGRIED 254
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A F+ D + + MIVG+G +A FD + ++ + + EFL
Sbjct: 255 AEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFL 314
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ M+ +G+ +IS+ VC A AV + +
Sbjct: 315 MEALSTFREMLHIGIRPNYPSVISILTVC---------------------AALAVLDYGR 353
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ + + + ++ + LI MY KCG++D A F KDVVM ++M GY HG
Sbjct: 354 EVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHG 413
Query: 371 LGEEGWVLFHHIR------------------------------------KHGIEPRHQHY 394
LGEE +F +R K GI+P +HY
Sbjct: 414 LGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHY 473
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A +VDLL RAG + A I MP+E + AL+ A ++
Sbjct: 474 ACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRM 514
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 110/276 (39%), Gaps = 39/276 (14%)
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
A Y P+V +++ GY ++G +A++LF + + N I TVL+ +
Sbjct: 104 ATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPE---------RNHISYTVLLGGFL 154
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSC 245
G VD A FD KDVV +AM+ GY G D E T D
Sbjct: 155 DAGRVDEARKLFDEMPAKDVVAWTAMLSGY-----CQVGRVD--------EARTLFDEMP 201
Query: 246 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAV 305
+ +V G+ + L L + + N W AM+ GY + G E+A
Sbjct: 202 KRNVVSWTAMVSGYAQNGQVNLARKLFEVMP-----ERNEVSWTAMLFGYIQAGRIEDAE 256
Query: 306 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+LF D+ + N +IV + + G VD A FDR ++D SA+
Sbjct: 257 ELFNAMPDHPLAAC---NGMIVG------FGQQGMVDAAKSVFDRMCERDDGTWSAIIKA 307
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
Y + E F + GI P +Y V+ +L
Sbjct: 308 YEQNEFLMEALSTFREMLHIGIRP---NYPSVISIL 340
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
A Y P+V + +++ GY ++G +A++LF + + N I TVL+ +
Sbjct: 104 ATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPE---------RNHISYTVLLGGFL 154
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYAR 396
G VD A FD KDVV +AM GY G +E LF + K + +
Sbjct: 155 DAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNV----VSWTA 210
Query: 397 VVDLLARAGYSNHAFKFIMNMP 418
+V A+ G N A K MP
Sbjct: 211 MVSGYAQNGQVNLARKLFEVMP 232
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 117/486 (24%), Positives = 188/486 (38%), Gaps = 141/486 (29%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA----------VCRYQP 132
+ L C L +G+ H +IKLGL + ++ L++L A V P
Sbjct: 123 FPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMP 182
Query: 133 --NVTLRNAMISGYAKNGYAEEAVKLFPKWMDY--------------------------- 163
++ N M+ GY NG A+ F + D
Sbjct: 183 ARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGR 242
Query: 164 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
Y + +V V T L+DMY KCG+V A F + + VV + MI GY L+E
Sbjct: 243 EIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNE 302
Query: 220 W--SAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQ---GKIVHGFMIKL----GL 265
AF F DG + E TA++ E G+ VH ++++ +
Sbjct: 303 RPVDAFDCFMQMRVDGF----QVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHV 358
Query: 266 ELESDLLISLTAVCRYQPNVTL-----------WNAMISGYAKNGYAEEAVKLF------ 308
LE+ LL V + + + + WN MI+ Y +EA+ LF
Sbjct: 359 VLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQ 418
Query: 309 PKWMDY------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
P + DY YI K Y ++ ++ ++ MYA+CG++ +
Sbjct: 419 PLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVAS 478
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGE------------------------------- 373
FD+ KDV+ + + +GY +HG G+
Sbjct: 479 REIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVS 538
Query: 374 ----EGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRA 428
EGW F+ +++ +G+ P+ +HY + DLL RAG +FI NMPI + +
Sbjct: 539 GLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGS 598
Query: 429 LLSAWK 434
LL+A +
Sbjct: 599 LLTASR 604
>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Brachypodium distachyon]
Length = 707
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 112/487 (22%), Positives = 178/487 (36%), Gaps = 141/487 (28%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY------------QPNV 134
L S + G +HG ++KLG ++ L LI + A C + NV
Sbjct: 11 LRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNV 70
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPK-------------------------------WMDY 163
A++ G+ ++G A E ++L W+
Sbjct: 71 VSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHG 130
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLH 218
++ + + +V L+ +Y+K G + A FD T+ +++V +AMI GY G
Sbjct: 131 ACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRD 190
Query: 219 EWSAFGSFDGLLSNEENE------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL- 271
F EE+ + + L L +G VH M+ G+ S+
Sbjct: 191 SLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAI 250
Query: 272 ----LISLTAVCR-------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKW--- 311
L+ + CR Q N W +I G+A+ G +EA++LF ++
Sbjct: 251 LAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSS 310
Query: 312 ---------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
+ Y K+ +V V LIDMY KCG D A
Sbjct: 311 GVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEA 370
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP--------------- 389
F ++VV +AM G G HG G+E +F +R G+EP
Sbjct: 371 ARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHS 430
Query: 390 ---------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRA 428
R +HYA +VDLL RAG + A + MP+ + V +
Sbjct: 431 GLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQT 490
Query: 429 LLSAWKI 435
LLSA ++
Sbjct: 491 LLSACRV 497
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/459 (23%), Positives = 167/459 (36%), Gaps = 156/459 (33%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------ 166
QP+ T + +IS +G + EA+K++ + I
Sbjct: 126 QPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKE 185
Query: 167 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----- 215
+ ++V V LI Y KC V+ A FD + +DVV +++ Y
Sbjct: 186 VHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGF 245
Query: 216 ---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---S 269
G+ + G + G+ N + L +L+ L+ GK +HGF ++ G+ +
Sbjct: 246 PRKGMDVFREMG-WSGVKPNPMT-VSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVC 303
Query: 270 DLLISLTAVC--------------------------------RYQPNVTL---------- 287
L+SL A C Y+ +L
Sbjct: 304 SALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVR 363
Query: 288 -----WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV--------------- 327
WNA+I G +NG +EEAV++F K +E + I+
Sbjct: 364 ADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEI 423
Query: 328 ---------------NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
T L+ MYAKCG ++L+ FD KDVV + M + +HG G
Sbjct: 424 HCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNG 483
Query: 373 EEGWVLFHHI------------------------------------RKHGIEPRHQHYAR 396
+E LF + R H +EP HY+
Sbjct: 484 KEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC 543
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VVD+ +RAG N A+KFI MP+E S ALL+A ++
Sbjct: 544 VVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 582
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 125/523 (23%), Positives = 208/523 (39%), Gaps = 117/523 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-LFDRTI---- 55
MQ++ + P+ T +L AC ++ L G ++H + G Y+ +G L D +
Sbjct: 236 MQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGD 295
Query: 56 --VFLDLYHLWSRTE---WS----AFGSFDGLLSNEE------------NEYGTAL---D 91
D+++L RT W+ A+G L + E N++
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRT 355
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNV 134
C+C + +E G+ +H IK G E SD+ +S + Y + +V
Sbjct: 356 CTCTGQ-IELGEQIHSLSIKNGFE--SDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDV 412
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPKWMD------------------------------YY 164
+MI+GY ++ + EEA+ F + D
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---LHEWS 221
+ S Y ++ + L+++YA+CG + A F KD + + +I G+G L+E +
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQA 532
Query: 222 AFGSFDGLLSNEENEYG-----TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
+S +Y +A+ +L ++QGK VHG +K G E+++
Sbjct: 533 LMVFMK--MSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA---- 586
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
NA+IS Y K G E+A +F + RN V NT++
Sbjct: 587 ------------NALISLYGKCGSIEDAKMIFSEM--------SLRNEVSWNTIITSCSQ 626
Query: 337 K---CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQ 392
++DL L + V + GL EEG F + +G+ P
Sbjct: 627 HGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPD 686
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA VVD+L RAG + A +F+ MPI + R LLSA K+
Sbjct: 687 HYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKV 729
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 134/362 (37%), Gaps = 86/362 (23%)
Query: 139 AMISGYAKNGYAEEAVKLFPK--W----------------------------MDYYIGKS 168
AM+SGYA+ G +EA +L+ + W + + K
Sbjct: 114 AMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQ 173
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSF 226
+ + V LI +Y GS LA F L D V + +I G+ H A F
Sbjct: 174 AFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIF 233
Query: 227 DGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC 279
D + L + + L + L++GK +H +++K G+ + L+ L C
Sbjct: 234 DEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKC 293
Query: 280 ------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY---- 314
+ NV LWN M+ Y + ++ ++F P Y
Sbjct: 294 GDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCIL 353
Query: 315 ---------YIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+G K+ + +++ V+ VLIDMY+K +D A + +DVV
Sbjct: 354 RTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVV 413
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFK 412
++M GY H EE F ++ G+ P + A A R G HA
Sbjct: 414 SWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV 473
Query: 413 FI 414
++
Sbjct: 474 YV 475
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
++ +LID+YAK G V A F +D V AM GY GLG+E + L+ +
Sbjct: 79 LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWT 138
Query: 386 GIEP 389
+ P
Sbjct: 139 AVIP 142
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/459 (23%), Positives = 167/459 (36%), Gaps = 156/459 (33%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------ 166
QP+ T + +IS +G + EA+K++ + I
Sbjct: 40 QPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKE 99
Query: 167 ------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----- 215
+ ++V V LI Y KC V+ A FD + +DVV +++ Y
Sbjct: 100 VHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGF 159
Query: 216 ---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---S 269
G+ + G + G+ N + L +L+ L+ GK +HGF ++ G+ +
Sbjct: 160 PRKGMDVFREMG-WSGVKPNPMT-VSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVC 217
Query: 270 DLLISLTAVC--------------------------------RYQPNVTL---------- 287
L+SL A C Y+ +L
Sbjct: 218 SALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVR 277
Query: 288 -----WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV--------------- 327
WNA+I G +NG +EEAV++F K +E + I+
Sbjct: 278 ADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEI 337
Query: 328 ---------------NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
T L+ MYAKCG ++L+ FD KDVV + M + +HG G
Sbjct: 338 HCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNG 397
Query: 373 EEGWVLFHHI------------------------------------RKHGIEPRHQHYAR 396
+E LF + R H +EP HY+
Sbjct: 398 KEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC 457
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VVD+ +RAG N A+KFI MP+E S ALL+A ++
Sbjct: 458 VVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 496
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 112/448 (25%), Positives = 174/448 (38%), Gaps = 115/448 (25%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 136
GLL N C+ F ++G+ +HG ++K G +L+ + +
Sbjct: 98 GLLPNSYTFPFLLKSCAKSXAF-KEGQQLHGQVLKFGFDLD----------------LYI 140
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
++IS Y +NG E+A K+ K S +R+ V+ T LI YA G ++ A
Sbjct: 141 HTSLISMYVQNGRLEDAQKVXDK--------SSHRD-VVSYTALITGYASRGXIESAHKM 191
Query: 197 FDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFL 250
FD KDVV +A I GY + A F ++ +E+ T L +
Sbjct: 192 FDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSI 251
Query: 251 EQGKIVHGFMIKLGLELESDLLISL-----------TAVCRYQ----PNVTLWNAMISGY 295
E G+ VH ++ G ++ +L TA +Q +V WN +I GY
Sbjct: 252 ELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGY 311
Query: 296 AKNGYAEEAVKLFP------------------------------KWMDYYIGK--SEYRN 323
+EA+ LF +W+ YI K N
Sbjct: 312 THMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTN 371
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ T LIDMYAKCG ++ A FD L++ + +AM G+ +HG + +F +R
Sbjct: 372 ASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 431
Query: 384 KHGIEP---------------------RH---------------QHYARVVDLLARAGYS 407
K+GIEP RH +HY ++DL +G
Sbjct: 432 KNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLF 491
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
A K I M +E + +LL A K+
Sbjct: 492 KEAEKMINTMEMEPDGVIWCSLLKACKM 519
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 126/307 (41%), Gaps = 43/307 (14%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTI-VFLDLYHLW 64
V P+ T VL AC S+ +G +VH I GF G + + +DLY
Sbjct: 231 VRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGF-------GXNLKIVNALIDLYSKC 283
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
E +A G F GL + + + T + G H + K L L D+L S
Sbjct: 284 GELE-TACGLFQGLSNKDVISWNTLI-----------GGYTHMNLYKEALLLFQDMLRS- 330
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK--SEYRNNVIVNTVLID 182
+PN +++S A G + +W+ YI K N + T LID
Sbjct: 331 ----GEKPNDVTMLSILSACAHLGAID-----IGRWIHVYIDKRLKGVTNASSLRTSLID 381
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALD 242
MYAKCG ++ A FD L++ + +AMI G+ +H A +FD +N G D
Sbjct: 382 MYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMH-GRANAAFDIFSRMRKN--GIEPD 438
Query: 243 CSCDLEFLE-QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA 301
D+ F+ H M+ LG + S+T + P + + MI +G
Sbjct: 439 ---DITFVGLLSACSHSGMLDLG----RHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLF 491
Query: 302 EEAVKLF 308
+EA K+
Sbjct: 492 KEAEKMI 498
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 118/478 (24%), Positives = 177/478 (37%), Gaps = 116/478 (24%)
Query: 53 RTIVFLDLYHLWSRTEWSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIK 111
++I+FL + + T + L S + + T L LEQ VH +I+
Sbjct: 42 QSIIFLPMTFIRRYTALTFPDYLPTLRSFDTTSSISTLLKACTTTSTLEQ---VHARIIR 98
Query: 112 LGLELESDLLISLTAVCRY---------------QPNVTLRNAMISGYAKNGYAEEAVKL 156
GL + ++ +C P+ L N I GY++N V L
Sbjct: 99 KGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSL 158
Query: 157 FP--KWMDYYIGKSEYRN----------------------------NVIVNTVLIDMYAK 186
F K D K Y + +V V T LID+Y K
Sbjct: 159 FIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGK 218
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCD 246
CG + A FD +++VV +AMI GY SF L+ E D +
Sbjct: 219 CGEILCARKVFDEMGERNVVSWTAMIAGYA--------SFSDLV-----EARKLFDEMPE 265
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK--------- 297
+ I+ G++ L + + R +V W+A+ISG K
Sbjct: 266 KNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNR---DVVAWSALISGNVKPDEFIMVSL 322
Query: 298 -NGYAEEAVKLFPKWMDYYIGKSE---YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+ ++ KW+D Y+ KS +R +VI LIDM AKCGS+D A F+
Sbjct: 323 MSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA--ALIDMNAKCGSMDRATKLFEEMPK 380
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--------------------------- 386
+D++ +M G +HG G + LF + G
Sbjct: 381 RDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYY 440
Query: 387 ---------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I P HYA +VDLL RAG A++ + +MP+E ALL A K+
Sbjct: 441 FESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKL 498
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 162/410 (39%), Gaps = 125/410 (30%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW------MDYY---------------IGK-- 167
+P++ N +IS YA G A+ LF MD + IG+
Sbjct: 102 EPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLH 161
Query: 168 -----SEYRNNVIVNTVLIDMYAKCGSVDLAP-MFFDRTLDKDVVMRSAMIVGYGLHE-- 219
S + + V VN L+ Y K G +D A +F+ +D V ++MIV YG H+
Sbjct: 162 SVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEG 221
Query: 220 WSAFGSFDGLLSNEEN-------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL- 271
A G F ++ N TA C LE L G HG +IK G S +
Sbjct: 222 SKALGLFQEMVRRGLNVDMFTLASVLTAFTC---LEDLSGGLQFHGQLIKTGFHQNSHVG 278
Query: 272 --LISLTAVCR-------------YQPNVTLWNAMISGYAKNG-YAEEAVKLFP------ 309
LI L + C +P++ LWN M+SGY++N + E+A++ F
Sbjct: 279 SGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG 338
Query: 310 ------------------------KWMDYYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLA 344
K + KS+ +N I V+ LI MY+KCG++ A
Sbjct: 339 YRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDA 398
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLG-------------------------------- 372
FDR + + V ++M GY HG+
Sbjct: 399 RRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHT 458
Query: 373 ---EEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
EEGW F+ ++ K IEP +HY+ ++DLL RAG + A I MP
Sbjct: 459 GRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 154/382 (40%), Gaps = 88/382 (23%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV NAMI+ Y +N + +EA+ LF + + N I T +I+ Y + G +D
Sbjct: 263 NVVAWNAMIAAYVQNCHVDEAISLFMEMPE---------KNSISWTTVINGYVRMGKLDE 313
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A ++ ++V ++AMI GY ++ A F+ + + + T + +
Sbjct: 314 ARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRM 373
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------QPNVTLWNAMISGYAKNG 299
++ + M+K + + ++ S V + + N+ WN++ISG +NG
Sbjct: 374 DEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNG 433
Query: 300 YAEEAVKLF------------------------------PKWMDYYIGKSEYRNNVIVNT 329
+A+K F K + + KS Y ++ V+
Sbjct: 434 SYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSN 493
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-------- 381
LI MYAKCGS+ A + F DVV +++ Y L+G G E LFH
Sbjct: 494 ALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAP 553
Query: 382 ----------------------------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
++ + IEP +HYA +VDLL RAG AF+
Sbjct: 554 DEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQL 613
Query: 414 IMNMPIELRLSVRRALLSAWKI 435
+ M I + ALL A +I
Sbjct: 614 VRGMKINANAGIWGALLGACRI 635
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 119/301 (39%), Gaps = 45/301 (14%)
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
SL +V + V N I+ K+G +EA+K+F + N + + +I
Sbjct: 4 SLKSVGEHGSYVFRHNLKITQLGKSGQIDEAIKVF---------QHMTHKNTVTHNSMIS 54
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE---WSAFGSFDGLLSNEENEYGT 239
+AK G + A FD +++V ++MI Y LH A FD + + + +
Sbjct: 55 AFAKNGRISDARQLFDGMPQRNIVSWNSMIAAY-LHNDRVEEARQLFDKMPTRDLYSWTL 113
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299
+ C + G++ +L + Y+ N NAM++GYAKN
Sbjct: 114 MITC-----YTRNGELAKAR--------------NLFNLLPYKWNPVCCNAMVAGYAKNR 154
Query: 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+EA +LF D K +++ ++ Y + G + L FF+ ++DVV
Sbjct: 155 QFDEARRLF----DAMPAK-----DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSW 205
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
+ M G+ G W F I P + ++ AR G A + MPI
Sbjct: 206 NLMVDGFVEVGDLNSSWEFFEKIPN----PNTVSWVTMLCGFARFGKIAEARRLFDQMPI 261
Query: 420 E 420
Sbjct: 262 R 262
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 113/274 (41%), Gaps = 53/274 (19%)
Query: 138 NAMISGYAKNGYAEEAVKLFPK--------W---MDYYIGKSEYRN-----------NVI 175
N+M++GY +NG ++ F + W +D ++ + + N +
Sbjct: 175 NSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTV 234
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGLLSNE 233
++ +A+ G + A FD+ ++VV +AMI Y H A F +
Sbjct: 235 SWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKN 294
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
+ T +++G+ +++G E+ L++ NV AMIS
Sbjct: 295 SISWTT---------------VINGY-VRMGKLDEARQLLNQMPY----RNVAAQTAMIS 334
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
GY +N ++A ++F + R+ V NT +I Y++CG +D A F + +
Sbjct: 335 GYVQNKRMDDARQIF--------NQISIRDVVCWNT-MIAGYSQCGRMDEALHLFKQMVK 385
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
KD+V + M Y G + +F +++ I
Sbjct: 386 KDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNI 419
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/477 (22%), Positives = 181/477 (37%), Gaps = 139/477 (29%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR----------------- 137
++ LE+GK ++ + +++GL SD++++ VC Y L+
Sbjct: 311 EMRDLEKGKEIYNYALQMGLM--SDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAW 368
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
+A +S + GY E + +F K M Y K
Sbjct: 369 SAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIK 428
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-------EW 220
++ +++ + T L+ MY + A F+R KD+V+ + +I G+ + E
Sbjct: 429 ADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEM 488
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---A 277
G+L + G C+ ++ L+ G +HG + K G E + + ++L A
Sbjct: 489 FNRLQLSGILPDSGTMVGLFSACAI-MDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYA 547
Query: 278 VC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY 315
C ++ + WN MI+GY NGY+ EA+ F P + +
Sbjct: 548 KCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFV 607
Query: 316 ---------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
I + + + ++ LIDMYAKCG + + F +K
Sbjct: 608 TILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENK 667
Query: 355 DVVMRSAMTVGYGLHGLGE-----------------------------------EGWVLF 379
D + +AM Y +HG GE EGW +F
Sbjct: 668 DTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIF 727
Query: 380 HHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ KH +EP +HYA +VDLL AG + + M E V ALL+A KI
Sbjct: 728 ASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKI 784
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 154/383 (40%), Gaps = 97/383 (25%)
Query: 103 KIVHGFMIKLGL-ELESDLLISLTAVC-------RYQPNVTLRN-----AMISGYAKNGY 149
K +HG++++ + + S+ LI + C R + +R+ M++GY KNG
Sbjct: 220 KSIHGYVVRRSICGVVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGC 279
Query: 150 AEEAVKLFPKWM----------------------DYYIGKSEYR--------NNVIVNTV 179
E ++L K D GK Y ++++V T
Sbjct: 280 YFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATP 339
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHEWSAFG--SFDGLLSN 232
++ MYAKCG + A F +D+V SA + GY S F ++GL +
Sbjct: 340 IVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPD 399
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQ--------- 282
+ C+ ++ + GKI+H + IK +E + ++ +L ++ R++
Sbjct: 400 KAILSILVSGCT-EISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLF 458
Query: 283 -----PNVTLWNAMISGYAKNGYAEEAVKLFPKW---------------------MDYY- 315
++ +WN +I+G+ K G A+++F + MD
Sbjct: 459 NRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLD 518
Query: 316 --------IGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMTVGY 366
I KS + +++ V L+DMYAKCGS+ + +F KD V + M GY
Sbjct: 519 LGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGY 578
Query: 367 GLHGLGEEGWVLFHHIRKHGIEP 389
+G E F ++ + P
Sbjct: 579 LHNGYSNEAISTFRRMKLENVRP 601
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 134/340 (39%), Gaps = 83/340 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKS 168
P++ L N+ I Y+K + +A+ L+ +D++ G +
Sbjct: 61 NPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVN 120
Query: 169 EYRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG--YGLH 218
Y++ +V + T LIDM+ K G +D A FD+ KD V +AMI G L+
Sbjct: 121 IYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLN 180
Query: 219 EWSAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL-ELESDLL 272
A F +G ++ + A S L + K +HG++++ + + S+ L
Sbjct: 181 PCEALEMFWRMQMEGFEVDKVSILNLAPAVS-RLGDVGCCKSIHGYVVRRSICGVVSNSL 239
Query: 273 ISLTAVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK--------- 310
I + C + +V+ W M++GY KNG E ++L K
Sbjct: 240 IDMYCKCGDVHSAQRVFDRMGVRDDVS-WATMMAGYVKNGCYFEGLQLLHKMRRGNVKMN 298
Query: 311 -------------WMDYYIGKSEYR--------NNVIVNTVLIDMYAKCGSVDLAPMFFD 349
D GK Y ++++V T ++ MYAKCG + A F
Sbjct: 299 KVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFL 358
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+D+V SA G E +F ++ G++P
Sbjct: 359 SLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKP 398
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 171/416 (41%), Gaps = 104/416 (25%)
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------------QPNVTLRNA 139
+E+GK +HG ++KL E+ S+L + + Y Q +V+ N+
Sbjct: 140 LVEEGKQIHGLLMKL--EIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSY-NS 196
Query: 140 MISGYAKNGYAEEAVKLFP----------KWMDYYIGKSEYRNNV--------------- 174
MI GY K+G + A +LF W G ++ ++ +
Sbjct: 197 MIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDL 256
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEWS-AFGSFDGLLSN 232
+ +I +AKCG ++ A F+R +DV+ S MI GY L + A FD +
Sbjct: 257 VSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDK 316
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
+ + T + + + G I ++ +S+L P+ T +
Sbjct: 317 DVVAFNTIM-----AGYAQNGYYTEALEIFHEMQRQSNL----------SPDETTLVVAL 361
Query: 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
S ++ G+ E+A + +++ I + V LIDMY+KCGS++ A + FD
Sbjct: 362 SAISQLGHVEKAASMHNYFLENGISVTGK-----VAVALIDMYSKCGSIENAILIFDGVD 416
Query: 353 DKDVVMRSAMTVGYGLHGLG-----------------------------------EEGWV 377
K + +AM G +GLG +EG +
Sbjct: 417 QKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLI 476
Query: 378 LFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
F +RK H +EP+ QHY +VD+L +AG A KFI MPIE + R LLSA
Sbjct: 477 CFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSA 532
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 31/291 (10%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
K E +N+ + LI MY +CG ++ A FDR +D V ++MI GY G+
Sbjct: 153 KLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGY-----VKSGTI 207
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGF-MIKLGLELESDLLISLTAVCRYQPNV 285
D L+ E + L+ D + ++ GF K G+ L +L + + ++
Sbjct: 208 D--LARELFD-SMPLE---DKNLISWNSMLGGFAQTKDGIGLALELFEKMP-----ERDL 256
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
WN +I G+AK G E A LF + + +VI + +ID YAK G + +A
Sbjct: 257 VSWNTIIGGFAKCGRIEFAHSLFNRM---------PKRDVISWSNMIDGYAKLGDIKVAR 307
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARA 404
FD DKDVV + + GY +G E +FH + R+ + P + +++
Sbjct: 308 TLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQL 367
Query: 405 GYSNHA---FKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452
G+ A + + I + V AL+ + EN + G+D+
Sbjct: 368 GHVEKAASMHNYFLENGISVTGKVAVALIDMYS-KCGSIENAILIFDGVDQ 417
>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
Length = 760
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 139/566 (24%), Positives = 222/566 (39%), Gaps = 155/566 (27%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLV----------CYLFDGLFDRTIVFLDLY 61
T +VLKAC L G ++H S GF+ Y GLFDR +V +
Sbjct: 82 TVAIVLKACCGDSKL--GCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENL 139
Query: 62 HLWSRTEW----SAFGSFDGLL--SNEENEYGTALD---CSCDLEFLEQGKIVHGFMIKL 112
+ W S F D L + N G A D C+ L F + GF+
Sbjct: 140 NNPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHE---GFI--F 194
Query: 113 GLELESDLLISLTAVCRYQPNVTLRNAMISGY--------AKNGYAE-EAVKLFPKWM-- 161
G +L S +L C V + NA+I+ Y A+ G + EA+ +F + +
Sbjct: 195 GFQLHSRIL-----KCGLDCEVFVGNALITMYSRCCRLVEARRGNSGLEAILVFLEMLKE 249
Query: 162 --------------------DYYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLA 193
++ +G+ Y +V V VLI Y+KC ++ A
Sbjct: 250 GMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDA 309
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLE 251
+ F+ +D++VV + MI S F DG+ N+ G + +E
Sbjct: 310 KLVFESIIDRNVVSWTTMISISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMK-NLVE 368
Query: 252 QGKIVHGFMIKLGLELE---SDLLISLTAVCRYQPN------------VTLWNAMISGYA 296
+G+++HG +K E S+ LI++ A + + WN++ISGYA
Sbjct: 369 EGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYA 428
Query: 297 KNGYAEEAVKLF--------PKWMDY-----------------------YIGKSEYRNNV 325
+NG +EA++ F P + +I K N
Sbjct: 429 QNGLWQEALQTFLSALMESRPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNP 488
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG--------------- 370
IV++ L+DMYAK GS+ + F T K+ V +A+ + HG
Sbjct: 489 IVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMERE 548
Query: 371 --------------------LGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNH 409
+ + G+ LF+ ++ H IEP +HY+ +VD+L RAG
Sbjct: 549 GVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKE 608
Query: 410 AFKFIMNMPIELRLSVRRALLSAWKI 435
A +F+ +P LSV ++LL A +I
Sbjct: 609 AEEFVGQIPGGAGLSVLQSLLGACRI 634
>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
Length = 599
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 113/452 (25%), Positives = 173/452 (38%), Gaps = 121/452 (26%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
V PNG T +L+AC +LL PR VHGQI GF G +D+Y
Sbjct: 105 VPPNGFTFTFLLRAC----ALLGLPRPCGCVHGQIVRCGF------GGDVFVQNALMDVY 154
Query: 62 HLWSRTEWSAFGS--FDGLLSNEENEY----------GTALDCSCDLEFLEQGKIVHGFM 109
+ FD ++ + + G A E + + +V
Sbjct: 155 YRCGGAGGVGAARQVFDQMVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNT 214
Query: 110 IKLGLELESDLLISLTAVCRYQP-NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 168
+ G D++ + T R N N MISGYA +G E A +F + MD
Sbjct: 215 VVAGFARAGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAAHSVFDR-MD------ 267
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228
+ +V+ T ++ YAK G +D A FD K++V +AMI GY
Sbjct: 268 --QKDVVSWTAMVSAYAKIGDLDNAKQLFDHMPVKNLVSWNAMITGY------------- 312
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288
N + Y AL + L LE R++P+
Sbjct: 313 ---NHNSRYDEALR-TFQLMMLEG---------------------------RFRPDEATL 341
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+++S A+ G E + W+ +IGKS+ V + LIDM+AKCG V A FF
Sbjct: 342 VSVVSACAQLGSVE-----YCNWIGSFIGKSKIHLTVALGNALIDMFAKCGDVGRAQSFF 396
Query: 349 DRTLDKDVVMRSAMTVGYGLHG-----------------------------------LGE 373
+ ++ + M G+ +G L +
Sbjct: 397 YEMKTRCIITWTTMISGFAFNGFCREALLVYNNMCREGIELDDTVFIAALAACAHGGLLQ 456
Query: 374 EGWVLFHH-IRKHGIEPRHQHYARVVDLLARA 404
EGW +F+ ++++ I+PR +HY +VDLL RA
Sbjct: 457 EGWSIFNEMVKQYNIQPRMEHYGCMVDLLGRA 488
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAP---MFFDRTLDKDVVMRSAMIVGYGLHEWS 221
I + + +V V L+D+Y +CG FD+ ++KDVV ++ IVG +
Sbjct: 135 IVRCGFGGDVFVQNALMDVYYRCGGAGGVGAARQVFDQMVEKDVVSWNS-IVGVYMSSGD 193
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
A G+ GL E + + +V + G D++ + T R
Sbjct: 194 ATGAM-GLF-----------------EAMPERNVVSWNTVVAGFARAGDMVTARTVFDRM 235
Query: 282 QP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
N WN MISGYA +G E A +F + MD + +V+ T ++ YAK G
Sbjct: 236 PSRNAVSWNLMISGYATSGDVEAAHSVFDR-MD--------QKDVVSWTAMVSAYAKIGD 286
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVVD 399
+D A FD K++V +AM GY + +E F + G P VV
Sbjct: 287 LDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 346
Query: 400 LLARAG---YSNHAFKFIMNMPIELRLSVRRALL 430
A+ G Y N FI I L +++ AL+
Sbjct: 347 ACAQLGSVEYCNWIGSFIGKSKIHLTVALGNALI 380
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 89/370 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPK------------------------------- 159
P++ N MI GYAK G+ EA++LF +
Sbjct: 126 SPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKA 185
Query: 160 ---WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
WM+ K +N+I+ L+DMY KC V+LA F +KD+V + ++ G
Sbjct: 186 VHGWMERR--KPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAG-- 241
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
+ G + + + + C + + +V G+ + +L++ +
Sbjct: 242 ---CAKVGELE-----QARLFFYQMPCR---DIVSWNSLVTGYACRGDFASVKELIVDMV 290
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+ + P+ +++S ++G ++ +W ++ + + + + + + LIDMY
Sbjct: 291 -MEKVIPDTVTMISLVSAATESGALDQG-----RWAHGWVIRMQIKLDAFLGSALIDMYC 344
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------ 372
KCGS++ A F KDV + + M G HG G
Sbjct: 345 KCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDVTFVSV 404
Query: 373 ----------EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
++G +F + +GIEP +HY +VDLLAR+G + A I MP++
Sbjct: 405 LSACSHSGLVDQGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPS 464
Query: 423 LSVRRALLSA 432
S+ A+L+A
Sbjct: 465 RSIWGAMLNA 474
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 31/202 (15%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEWSAFGSFDGLL 230
+ LI +Y + G V LA F++ D+V + MIVGY GL F G L
Sbjct: 100 LQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVG-L 158
Query: 231 SNEENEYGT-ALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288
E +E+ L SC L ++ GK VHG+M + + S+L+ L
Sbjct: 159 GLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLI--------------LG 204
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
NA++ Y K E A++ F + +++ +++ AK G ++ A +FF
Sbjct: 205 NALLDMYVKCQKVELALRTFGALKE---------KDIVSWNMIVAGCAKVGELEQARLFF 255
Query: 349 DRTLDKDVVMRSAMTVGYGLHG 370
+ +D+V +++ GY G
Sbjct: 256 YQMPCRDIVSWNSLVTGYACRG 277
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
+ LI +Y + G V LA F++ D+V + M VGY G G E LFH + G
Sbjct: 100 LQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLG 159
Query: 387 IEP 389
+EP
Sbjct: 160 LEP 162
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 137/341 (40%), Gaps = 68/341 (19%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV AMISGYA+NG A KLF D RN V +L+ Y + G V+
Sbjct: 204 NVVSWTAMISGYAQNGKVILARKLFEVMPD--------RNEVSWTAMLVG-YIQAGHVED 254
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A F+ D V +AM+VG+G H +A F+ + + ++ + + EFL
Sbjct: 255 AEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFL 314
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ M+ G+ IS+ VC + A Y E
Sbjct: 315 MEALSTFREMLCRGIRPNYTSFISILTVC-------------AALATADYGRE------- 354
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+ + + + +V + LI MY KCG++D A F+ KDVVM ++M GY HG
Sbjct: 355 -LHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHG 413
Query: 371 LGEEGWVLFHHIRKHGIEPR------------------------------------HQHY 394
LGEE +F +R + P HY
Sbjct: 414 LGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHY 473
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +VDLL RAG + A I NMP+E + AL+ A ++
Sbjct: 474 SCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRM 514
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 67/251 (26%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P+V +++ GY ++G +A++LF + + RN+V TVL+ + G V+
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPE--------RNHVTY-TVLLGGFLDAGRVN 160
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251
A FD DKDVV R+AM+ GY C +
Sbjct: 161 EARKLFDEMPDKDVVARTAMLSGY-----------------------------CQAGRIT 191
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
+ + + M K NV W AMISGYA+NG A KLF
Sbjct: 192 EARALFDEMPKR--------------------NVVSWTAMISGYAQNGKVILARKLFEVM 231
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
D RN V +L+ Y + G V+ A F+ D V +AM VG+G HG+
Sbjct: 232 PD--------RNEVSWTAMLVG-YIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGM 282
Query: 372 GEEGWVLFHHI 382
+ +F +
Sbjct: 283 VDAAKAMFERM 293
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
P+V + +++ GY ++G +A++LF + + RN+V TVL+ + G V+
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPE--------RNHVTY-TVLLGGFLDAGRVN 160
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
A FD DKDVV R+AM GY G E LF + K +
Sbjct: 161 EARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNV 205
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 161/398 (40%), Gaps = 107/398 (26%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS----------LTAVCRY----- 130
Y L D + +G VH ++K GL + +L S L R
Sbjct: 140 YPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKG 199
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ + NAMI GY + G E A +LF D R+ + +I +++CG
Sbjct: 200 GEVDAVCWNAMIDGYLRFGEVEAARELFEGMPD--------RSMISTWNAMISGFSRCGM 251
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
V++A FFD ++D + SAMI DG + C +E
Sbjct: 252 VEVAREFFDEMKERDEISWSAMI--------------DGYIQE-----------GCFMEA 286
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
LE I H + + +P + +++S A G ++
Sbjct: 287 LE---IFHQMQKE-----------------KIRPRKFVLPSVLSACANLGALDQG----- 321
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+W+ Y ++ + + ++ T L+DMYAKCG +DLA F++ +K+V +AM G +H
Sbjct: 322 RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMH 381
Query: 370 GLGEE--------------------------------GWVLFHHIRK-HGIEPRHQHYAR 396
G E+ G +F+ +RK +G+EP+ +HY
Sbjct: 382 GRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGC 441
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+VDLL RAG A K + ++P E +V ALL A +
Sbjct: 442 IVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACR 479
>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
Length = 771
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 165/398 (41%), Gaps = 85/398 (21%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTLR 137
DL + GK VHG+ I+ +E SD+ I+ + + Y NV
Sbjct: 326 DLGYFHLGKEVHGYSIRRAME--SDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSW 383
Query: 138 NAMISGYAKNGYAEEA-------------------VKLFP---KWMDYYIGK-----SEY 170
NAMI+ A+NG EA V L P + +GK S +
Sbjct: 384 NAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIH 443
Query: 171 RN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGS 225
R+ ++ V+ LID+YAKCG + +A FDR+ +KD V + +IVGY + + +
Sbjct: 444 RSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRS-EKDDVSYNTLIVGYSQSQCCFESLHL 502
Query: 226 FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F + S + + L +L +QGK +HG +++ L
Sbjct: 503 FQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLL---------------- 546
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ L N+++ Y K G A K+F + R +V +I Y G +
Sbjct: 547 NTHPFLANSLLDLYTKGGMLATASKIFNRIT---------RKDVASWNTMILGYGMHGQI 597
Query: 342 DLAPMFFD----RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397
D+A FD +D D V A+ GL + G F + I+P+ HYA +
Sbjct: 598 DVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACM 657
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VDLL RAG + + + I NMP V ALL + +I
Sbjct: 658 VDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRI 695
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 44/264 (16%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV-LIDMYAKCGS------- 189
N+++S NG E+A + M R+ + VN L+ + CG+
Sbjct: 182 NSLVSALLTNGMLEDAKRAVVGMM---------RSGIPVNVASLVSVVPACGTERDEGFG 232
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDL 247
+ + + LD V + +A++ YG S+ F+G+ E + +AL C
Sbjct: 233 LSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHA 292
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ--PNVTLWNAMISGYAKNGYAEEAV 305
F E D+L + ++ P ++++ GY
Sbjct: 293 GFHE------------------DVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFH--- 331
Query: 306 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
K + Y + +++ + L+DMYAK G ++ A F+ ++VV +AM
Sbjct: 332 --LGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIAN 389
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEP 389
+G E + L ++K+G P
Sbjct: 390 LAQNGAETEAFSLVIEMQKNGECP 413
>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
Length = 596
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 138/342 (40%), Gaps = 65/342 (19%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ +V N+MISGYAK G + A LF + + N LI Y CG +
Sbjct: 218 KKDVISWNSMISGYAKIGDMDRACVLFQQMPE---------KNYSSWNALISGYVNCGDI 268
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNEENEYGTALDCSCDLE 248
A FFD +++ V MI GY SA FD + + + + C
Sbjct: 269 KSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISC----- 323
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
+ L L S++L A QP+ +++S ++ G F
Sbjct: 324 ------FAQNSQPRKALWLFSEML---KAYANIQPDQMTLASVVSACSQLGDLR-----F 369
Query: 309 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
W++ Y+ + + T L+D+YAKCGSVD A F KDVV SAM G G+
Sbjct: 370 ASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMISGCGI 429
Query: 369 HG-----------------------------------LGEEGWVLFHHIRKHGIEPRHQH 393
+G L +EG+ F ++ HG+ P H
Sbjct: 430 NGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKDHGLVPSTDH 489
Query: 394 YARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
YA +VDLL RAG A++ I +MP++ V ALL A +
Sbjct: 490 YAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACNV 531
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 116/276 (42%), Gaps = 34/276 (12%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P+ ++ + YA+ Y + + + Y + N V V T L+D+Y+K G ++
Sbjct: 122 PSTFAVSSALRAYARTTYKMGGMSIHAESYKY-----GFSNCVYVQTALVDLYSKLGDMN 176
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251
A FD +K+VV ++++ G+ L S E D + +
Sbjct: 177 TAQKVFDELAEKNVVSWNSILSGH-------------LKSGNLLEAQRVFDQISKKDVIS 223
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
++ G+ K+G + +L + N + WNA+ISGY G + A + F
Sbjct: 224 WNSMISGYA-KIGDMDRACVLFQQMP----EKNYSSWNALISGYVNCGDIKSAWRFFDAM 278
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ RN+V T +I Y+KCG VD A FD+ KD++ +AM + +
Sbjct: 279 PE--------RNSVSWIT-MIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQ 329
Query: 372 GEEGWVLFHHIRK--HGIEPRHQHYARVVDLLARAG 405
+ LF + K I+P A VV ++ G
Sbjct: 330 PRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLG 365
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
P+ ++ + YA+ Y + + + Y + N V V T L+D+Y+K G ++
Sbjct: 122 PSTFAVSSALRAYARTTYKMGGMSIHAESYKY-----GFSNCVYVQTALVDLYSKLGDMN 176
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
A FD +K+VV +++ G+ G E +F I K + + ++ A
Sbjct: 177 TAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKKDVIS----WNSMISGYA 232
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ G + A MP E S AL+S +
Sbjct: 233 KIGDMDRACVLFQQMP-EKNYSSWNALISGY 262
>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
Length = 655
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 154/385 (40%), Gaps = 100/385 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
P ++ NA++SGY + GY A LF G+ + RN V N V+I YA+ GS+
Sbjct: 186 SPPTSVCNALLSGYVELGYMRAAEVLF--------GQMQTRNPVSWN-VMITGYARAGSM 236
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS---AFGSFDGLLSNEENEYGTALDCSCDL 247
+A FD +KDV+ R+A++ GY L S A+ F + + + T +D
Sbjct: 237 GIAQRLFDEMPEKDVLSRTAIMRGY-LQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRN 295
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCR----------------YQPN--VTLWN 289
+ L+ +KL E+ IS A+ + PN WN
Sbjct: 296 DRLDDA-------LKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWN 348
Query: 290 AMISGYAKNG---YAEEAVK--LFP---------------------KWMDYYIGKSEYRN 323
+ISGY G E ++ L P K + + K+ + +
Sbjct: 349 TLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEH 408
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ +V + LI MY+KCG + A F+ L +D V +AM Y HGL +E +F +
Sbjct: 409 DALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMT 468
Query: 384 KHGIEPRH------------------------------------QHYARVVDLLARAGYS 407
K G P H HY+ +VDLL R+G+
Sbjct: 469 KAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFI 528
Query: 408 NHAFKFIMNMPIELRLSVRRALLSA 432
+ A+ F +P + R + L SA
Sbjct: 529 HQAYDFTRRIPSDHRTTAWETLFSA 553
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 132/296 (44%), Gaps = 44/296 (14%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ NV N M+SG +N EA K+F RN+V L+ YA+CG V
Sbjct: 62 ERNVFTWNCMVSGLIRNRMLAEARKVF--------DAMPVRNSVSW-AALLTGYARCGRV 112
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A F+R D++VV +AM+ GY +G++ E + D+ +L
Sbjct: 113 AEARELFNRIPDRNVVSWNAMVSGYAR---------NGMV-KRARELFDMMPWRDDVSWL 162
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G++ + + +L S+ + P ++ NA++SGY + GY A LF
Sbjct: 163 ---TMISGYIKRKHVREARELFDSMPS-----PPTSVCNALLSGYVELGYMRAAEVLF-- 212
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
G+ + RN V N V+I YA+ GS+ +A FD +KDV+ R+A+ GY +G
Sbjct: 213 ------GQMQTRNPVSWN-VMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNG 265
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYA--RVVDLLARAGYSNHAFKFIMNMPIELRLS 424
+ W +F + P A ++D R + A K MP ++S
Sbjct: 266 SVDAAWKVFKDM------PHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQIS 315
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 108/431 (25%), Positives = 169/431 (39%), Gaps = 124/431 (28%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
+G+ +HG ++KLG +L+ + + ++I+ Y KNG E+A K+F
Sbjct: 119 FREGQQIHGHVLKLGCDLD----------------LYVHTSLIAMYVKNGRXEDARKVFD 162
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL- 217
+ S +R+ V+ T LI YA G + A FD KDVV +A+I GY
Sbjct: 163 Q--------SSHRD-VVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAET 213
Query: 218 -HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFM------------ 260
+ A F ++ +E+ T L +E G+ VH ++
Sbjct: 214 GNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273
Query: 261 -------IKLG-LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--- 309
IK G +E S L L+ +V WN +I GY +EA+ LF
Sbjct: 274 NALIDLYIKCGEVETASGLFEGLS-----YKDVISWNTLIGGYTHMNLYKEALLLFQEML 328
Query: 310 ---------------------------KWMDYYIGK--SEYRNNVIVNTVLIDMYAKCGS 340
+W+ YI K N + T LIDMYAKCG
Sbjct: 329 RSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGD 388
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------- 389
++ A FD L++ + +AM G+ +HG + +F +RK GIEP
Sbjct: 389 IEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSA 448
Query: 390 ----------RH---------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLS 424
RH +HY ++DLL +G A + I +M ++
Sbjct: 449 CSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGV 508
Query: 425 VRRALLSAWKI 435
+ +LL A K+
Sbjct: 509 IWCSLLKACKM 519
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 66/220 (30%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KW 311
Q +V WN MISGYA+NG+ EA+ LF KW
Sbjct: 232 QRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKW 291
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ Y GK++ + ++ + L+DMY+KCGS+D A F+ ++ + SA+ + +HG
Sbjct: 292 IHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGR 351
Query: 372 GEEGWVLFHHIRKHGI------------------------------------EPRHQHYA 395
E+ + FH + K G+ +PR +HY
Sbjct: 352 AEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYG 411
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAG+ A + I NMPIE + +ALL A K+
Sbjct: 412 CMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKM 451
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 138/353 (39%), Gaps = 90/353 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLY 61
V PN T P VLKAC L G ++HG I GF V ++ V D Y
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK--------IVHGFMIKLG 113
L+ + FDG SC +E ++ + I+ ++LG
Sbjct: 178 SLFCKN----VVDFDG---------------SCQMELDKRKQDGNVVLWNIMIDGQVRLG 218
Query: 114 -LELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP-------------- 158
++ +L + Q +V N MISGYA+NG+ EA+ LF
Sbjct: 219 DIKSAKNLFDEMP-----QRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTL 273
Query: 159 ----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 202
KW+ Y GK++ + ++ + L+DMY+KCGS+D A F+
Sbjct: 274 VSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPK 333
Query: 203 KDVVMRSAMIVGYGLHEWS--AFGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKI 255
++ + SA+I + +H + A F G+ N+ G CS +E+G+
Sbjct: 334 RNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACS-HAGLVEEGRS 392
Query: 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
M+K V QP + + M+ + G+ EEA +L
Sbjct: 393 FFSHMVK---------------VVGLQPRIEHYGCMVDLLGRAGHLEEAEELI 430
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 135/604 (22%), Positives = 222/604 (36%), Gaps = 177/604 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDG------- 49
M+V V+ + T P VLKAC A +G +HG G+ VC
Sbjct: 139 MRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGD 198
Query: 50 ------LFDRTIVFLDLYHLWSRTEWSAFGSFDGL-----------LSNEENEYG--TAL 90
LFD ++ D W+ + G + L + E N Y +AL
Sbjct: 199 LGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSAL 258
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------RYQPNVTLR--- 137
F++ G+ +H ++K + S+ LI++ A C R ++ +
Sbjct: 259 QACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCV 318
Query: 138 --NAMISGYAKNGYAEEAVKLFPKWMDY------------------------------YI 165
N ++SG +N +A+ F D Y
Sbjct: 319 SWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYA 378
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
K +N+ + LIDMY KC V F+ +KD++ + +I GY +E
Sbjct: 379 IKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECH---- 434
Query: 226 FDGL----------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
D L + + G+ L L+ + K +HG+++K GL +D+LI
Sbjct: 435 LDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL---ADILIQN 491
Query: 276 TAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD----- 313
V Y ++ W +MI+ NG A EA++LF ++
Sbjct: 492 AIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEP 551
Query: 314 --------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ I K + +I N+ L+DMYA+CG+++ A
Sbjct: 552 DLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANS-LVDMYARCGTMENARNI 610
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------- 391
F+ +D+++ ++M G+HG G++ LF + + P H
Sbjct: 611 FNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLV 670
Query: 392 --------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HYA +VDLLAR+ A+ F+ NMPIE V ALL
Sbjct: 671 VEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLG 730
Query: 432 AWKI 435
A +I
Sbjct: 731 ACRI 734
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 120/301 (39%), Gaps = 62/301 (20%)
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
+++ Y ++V ++T + MY KCGS A FD+ ++ + +AMI G +
Sbjct: 71 HFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMI-GACVSAGRY 129
Query: 223 FGSFDGLLSNEENEYGTALDC---SCDLE----FLEQ--GKIVHGFMIKL---GLELESD 270
+ + L E G +LD C L+ F E+ G +HG +K G +
Sbjct: 130 VEAIE--LYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCN 187
Query: 271 LLISLTAVC--------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY-- 314
LI++ A C + + WN++IS + G + EA+ LF + +
Sbjct: 188 ALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGV 247
Query: 315 ----------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
I KS + +V V+ LI MYA CG ++ A
Sbjct: 248 ESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAER 307
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
F L KD V + + G + + + F ++ G +P V++++A +G
Sbjct: 308 VFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQ---VSVLNMIAASGR 364
Query: 407 S 407
S
Sbjct: 365 S 365
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 142/353 (40%), Gaps = 97/353 (27%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDV-----VMRSAMIVGYGLHEWSAFGSFDGL-LS 231
T LI MY+ GSVD A FD+T + + + R+ + G+G + + + +
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 232 NEENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP---- 283
++ Y L C + L +GK +H + + G S + I T V Y
Sbjct: 176 SDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYN--SHVYIMTTLVDMYARFGCV 233
Query: 284 -------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------------- 314
NV W+AMI+ YAKNG A EA++ F + M
Sbjct: 234 DYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQ 293
Query: 315 ----------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
YI + + + V + L+ MY +CG +D+ FDR D+DVV
Sbjct: 294 ACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVS 353
Query: 359 RSAMTVGYGLHGLG-----------------------------------EEGWVLFHHI- 382
+++ YG+HG G EEG LF +
Sbjct: 354 WNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMW 413
Query: 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R HGI+P+ +HYA +VDLL RA + A K + +M E V +LL + +I
Sbjct: 414 RDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRI 466
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 53/190 (27%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTL 136
C + L +GK +H + + G S + I T V Y NV
Sbjct: 193 CTADHLTKGKEIHAHLTRRGYN--SHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVS 250
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDY--------------------------------Y 164
+AMI+ YAKNG A EA++ F + M Y
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGY 310
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
I + + + V + L+ MY +CG +D+ FDR D+DVV +++I YG+H + A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKA 370
Query: 223 FGSFDGLLSN 232
F+ +L+N
Sbjct: 371 IQIFEEMLAN 380
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 81/195 (41%), Gaps = 49/195 (25%)
Query: 16 VLKACVA----LPSLLMGPRVHGQIFSLGF---------------------LVCYLFDGL 50
VLKACVA L G +H + G+ Y+F+G+
Sbjct: 184 VLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGM 243
Query: 51 FDRTIV-FLDLYHLWSRT--EWSAFGSFDGLLSNEENEYGTA------LDCSCDLEFLEQ 101
R +V + + +++ + A +F +++ ++ + L L LEQ
Sbjct: 244 PVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQ 303
Query: 102 GKIVHGFMIKLGLEL---ESDLLISLTAVC------------RYQPNVTLRNAMISGYAK 146
G+++HG++++ GL+ L+++ C + +V N++IS Y
Sbjct: 304 GRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGV 363
Query: 147 NGYAEEAVKLFPKWM 161
+GY +A+++F + +
Sbjct: 364 HGYGRKAIQIFEEML 378
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 159/417 (38%), Gaps = 117/417 (28%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAE 151
CS F+E +I H IK GL N+ ++N ++ YA +G+ E
Sbjct: 148 CSQSHAFIEALQI-HAHSIKTGLS----------------SNLFVKNTLMRFYAVSGFIE 190
Query: 152 EAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA-PMFFDRTLDKDVVM 207
K+F P W ++I T LI Y+K G A FF D
Sbjct: 191 AVEKVFDQGPHW------------DLISWTTLIQAYSKMGYPSEAIAAFFRMNCTAD--- 235
Query: 208 RSAMIVGYGLHEWSAFGSF---DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 264
R ++V L S G F +L+ ++ D D+ FL G + +K G
Sbjct: 236 RMTLVVV--LSACSQLGDFTLGKKILAYMDHHL---FDVHSDV-FL--GNALLDMYLKCG 287
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------- 309
+ L L V N+ WN+MISG A G +EA+ +F
Sbjct: 288 QPHLARQLFHLMPV----KNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLV 343
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
KW+ YI K+ + + V L+DMYAKCGS+D A M F K
Sbjct: 344 GVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCK 403
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------- 391
DV +AM VG+ +HG + +F + + G+ P H
Sbjct: 404 DVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHF 463
Query: 392 -------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDLL RAG + A F MPI SV +LL A KI
Sbjct: 464 QDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKI 520
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 145/362 (40%), Gaps = 97/362 (26%)
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
MI+GY + G +EA +L + + YRN + T +I Y +C VD A FFD
Sbjct: 262 TMINGYVRIGKLDEAREL--------LNEMPYRN-IGAQTAMISGYIQCNKVDEARRFFD 312
Query: 199 RTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
DVV +AMI GY H A +++ + + T + C + +++
Sbjct: 313 EIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRA--- 369
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF-------- 308
+K+ E+ L+S WN++I+G+ NG +A+K F
Sbjct: 370 ----VKIFEEMGERDLVS-------------WNSLIAGFMLNGQNLDALKSFALMGHEGK 412
Query: 309 -PKWMDYYIG---------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
P + + G K Y N ++VN LI MYAKCG + A +
Sbjct: 413 KPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGL 472
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-------------------- 386
F+ DV+ +++ GY ++G G+E LF + G
Sbjct: 473 VFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGM 532
Query: 387 ----------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
IEP +HYA +VDLL R G + AF+ + M ++ V ALL
Sbjct: 533 VDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALL 592
Query: 431 SA 432
A
Sbjct: 593 GA 594
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 136/353 (38%), Gaps = 54/353 (15%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK--------WMDYYIGKSEYRN------- 172
C Y+ V NAMISGY K G EA +LF + W G ++ R
Sbjct: 96 CSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEF 155
Query: 173 -------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
+V+ +++D + + G +D A FF T +VV M+ G F
Sbjct: 156 FNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSG--------FAR 207
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
+L E D + ++ ++ + ++ S L + + +
Sbjct: 208 NGNIL-----ESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMP-----ERDS 257
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
W MI+GY + G +EA +L + + YR N+ T +I Y +C VD A
Sbjct: 258 VSWTTMINGYVRIGKLDEAREL--------LNEMPYR-NIGAQTAMISGYIQCNKVDEAR 308
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
FFD DVV +AM GY HG E L K + + ++ A+ G
Sbjct: 309 RFFDEIGTWDVVCWNAMIAGYAHHGRINEALCL----SKRMVNKDMVTWNTMISCYAQVG 364
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDK 458
+ A K M E L +L++ + + Q + + EG+K D+
Sbjct: 365 QMDRAVKIFEEMG-ERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQ 416
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 48/244 (19%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG-- 228
+N V N+ +I +YAK G ++ A FD+ +++V + M+ GY LH G FD
Sbjct: 4 KNTVTYNS-MISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGY-LHN----GKFDEAY 57
Query: 229 ---LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
++ + + L +C + G++ E +L SL C Y+ V
Sbjct: 58 KLFVIMPRRDLFSWTLMITC---YTRNGEV----------EKARELFDSLP--CSYRKGV 102
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPK--------WMDYYIGKSEYRN-------------- 323
WNAMISGY K G EA +LF + W G ++ R
Sbjct: 103 ACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDER 162
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+V+ +++D + + G +D A FF T +VV M G+ +G E LF +
Sbjct: 163 DVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMP 222
Query: 384 KHGI 387
I
Sbjct: 223 SRNI 226
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 144/348 (41%), Gaps = 76/348 (21%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV MI+GY +N + A KLF + N + T ++ Y CG +D
Sbjct: 283 NVVSWTTMITGYVQNQQVDIARKLFEVMPE---------KNEVSWTAMLKGYTNCGRLDE 333
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDC----SCD 246
A F+ K VV +AMI+ +G + A FD + +E + + +
Sbjct: 334 ASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLE 393
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK 306
L+ LE + M + G+ LIS+ +VC +G A + E
Sbjct: 394 LDALE----LFRMMQREGIRPNFPSLISVLSVC-------------AGLANLDHGRE--- 433
Query: 307 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ + +S++ +V V +VL+ MY KCG++ A FDR KDVVM +++ GY
Sbjct: 434 -----IHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY 488
Query: 367 GLHGLGEEGWVLFHHIR------------------------------------KHGIEPR 390
HGLG E +FH + K+ +E +
Sbjct: 489 AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQK 548
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQ 438
+HYA +VDLL RAG N A I MP+E + ALL A + M+
Sbjct: 549 IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMK 596
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 27/216 (12%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
N +I LI Y++ G ++ A + FD DK+++ ++++ GY +
Sbjct: 96 NFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGY-------------FQN 142
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
E D + + +V G+ I G+ E+ + + NV W AM
Sbjct: 143 KRPQEAQNMFDKMSERNTISWNGLVSGY-INNGMINEAREVFDRMP----ERNVVSWTAM 197
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ GY K G EA LF + + NV+ TV++ + G +D A FD
Sbjct: 198 VRGYVKEGMISEAETLFWQMPE---------KNVVSWTVMLGGLLQEGRIDEACRLFDMM 248
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+KDVV R+ M GY G E +LF + + +
Sbjct: 249 PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNV 284
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 46/253 (18%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
N+ N++++GY +N +EA +F K + RN + N L+ Y G ++
Sbjct: 128 NIISWNSIVAGYFQNKRPQEAQNMFDKMSE--------RNTISWNG-LVSGYINNGMINE 178
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
A FDR +++VV +AM+ GY +G++S E + +
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGY---------VKEGMISEAETLFWQMPE---------- 219
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRY-----QPNVTLWNAMISGYAKNGYAEEAVKL 307
K V + + LG L+ + CR + +V MI GY + G EA L
Sbjct: 220 -KNVVSWTVMLGGLLQEG---RIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARML 275
Query: 308 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
F + R NV+ T +I Y + VD+A F+ +K+ V +AM GY
Sbjct: 276 FDEMP---------RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326
Query: 368 LHGLGEEGWVLFH 380
G +E LF+
Sbjct: 327 NCGRLDEASELFN 339
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 139/325 (42%), Gaps = 67/325 (20%)
Query: 138 NAMISGYAKNGYAEEAVKLFP-------------------------------KWMDYYIG 166
NA+ISGY G+ EA+ LF K + Y+
Sbjct: 164 NAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLI 223
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI--VGYGLHEWSAFG 224
+S + +V T L+D+Y KCGS++ A FD+ DKD+V + MI + F
Sbjct: 224 RSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFS 283
Query: 225 SFDGLLSN--EENEYGTA--LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F L+ + NEY A L+ DL + GK VHG+M ++G
Sbjct: 284 LFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVG---------------- 327
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
Y P +A++ Y+K G E A ++F + R +++ T LI YA+ G
Sbjct: 328 YDPFSFAASALVHVYSKCGNTETARRVFNQMP---------RPDLVSWTSLIVGYAQNGQ 378
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIR-KHGIEPRHQHYA 395
D+A FF+ L VG GL + G FH ++ KHG+ HYA
Sbjct: 379 PDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYA 438
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIE 420
V+DLLAR+G A I NMP++
Sbjct: 439 CVIDLLARSGRFKEAENIIDNMPMK 463
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
QP+ L++ +I+ ++ E K + + S + ++++ LI MYAKCGS+
Sbjct: 60 QPSPRLYSTLIAACLRHRKLE-----LGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSL 114
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
A M FD KD+ + M GY G E+ LF
Sbjct: 115 VDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLF 152
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 32/163 (19%)
Query: 46 LFDGLFDRTIV-FLDLYH--LWSRTEWSAFGSFDGLLSN--EENEYGTA--LDCSCDLEF 98
+FD + D+ IV + + H + F F L+ + NEY A L+ DL
Sbjct: 253 IFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAA 312
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
+ GK VHG+M ++G Y P +A++ Y+K G E A ++F
Sbjct: 313 EQMGKEVHGYMTRVG----------------YDPFSFAASALVHVYSKCGNTETARRVFN 356
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201
+ R +++ T LI YA+ G D+A FF+ L
Sbjct: 357 QMP---------RPDLVSWTSLIVGYAQNGQPDMALQFFESLL 390
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 144/348 (41%), Gaps = 76/348 (21%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV MI+GY +N + A KLF + N + T ++ Y CG +D
Sbjct: 283 NVVSWTTMITGYVQNQQVDIARKLFEVMPE---------KNEVSWTAMLKGYTNCGRLDE 333
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDC----SCD 246
A F+ K VV +AMI+ +G + A FD + +E + + +
Sbjct: 334 ASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLE 393
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK 306
L+ LE + M + G+ LIS+ +VC +G A + E
Sbjct: 394 LDALE----LFRMMQREGIRPNFPSLISVLSVC-------------AGLANLDHGRE--- 433
Query: 307 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ + +S++ +V V +VL+ MY KCG++ A FDR KDVVM +++ GY
Sbjct: 434 -----IHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY 488
Query: 367 GLHGLGEEGWVLFHHIR------------------------------------KHGIEPR 390
HGLG E +FH + K+ +E +
Sbjct: 489 AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQK 548
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQ 438
+HYA +VDLL RAG N A I MP+E + ALL A + M+
Sbjct: 549 IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMK 596
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 27/216 (12%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
N +I LI Y++ G ++ A + FD DK+++ ++++ GY +
Sbjct: 96 NFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGY-------------FQN 142
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
E D + + +V G+ I G+ E+ + + NV W AM
Sbjct: 143 KRPQEAQNMFDKMSERNTISWNGLVSGY-INNGMINEAREVFDRMP----ERNVVSWTAM 197
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ GY K G EA LF + + NV+ TV++ + G +D A FD
Sbjct: 198 VRGYVKEGMISEAETLFWQMPE---------KNVVSWTVMLGGLLQEGRIDEACRLFDMM 248
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+KDVV R+ M GY G E +LF + + +
Sbjct: 249 PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNV 284
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 46/253 (18%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
N+ N++++GY +N +EA +F K + RN + N L+ Y G ++
Sbjct: 128 NIISWNSIVAGYFQNKRPQEAQNMFDKMSE--------RNTISWNG-LVSGYINNGMINE 178
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
A FDR +++VV +AM+ GY +G++S E + +
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGY---------VKEGMISEAETLFWQMPE---------- 219
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRY-----QPNVTLWNAMISGYAKNGYAEEAVKL 307
K V + + LG L+ + CR + +V MI GY + G EA L
Sbjct: 220 -KNVVSWTVMLGGLLQEG---RIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARML 275
Query: 308 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
F + R NV+ T +I Y + VD+A F+ +K+ V +AM GY
Sbjct: 276 FDEMP---------RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326
Query: 368 LHGLGEEGWVLFH 380
G +E LF+
Sbjct: 327 NCGRLDEASELFN 339
>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
Length = 745
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 116/463 (25%), Positives = 182/463 (39%), Gaps = 120/463 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
V PNG T +L+AC +LL PR VHGQI GF +F + +D+Y
Sbjct: 107 VPPNGFTFTFLLRAC----ALLGLPRPCGCVHGQIVRCGF-----GSDVFVQN-ALVDVY 156
Query: 62 H--LWSRTEWSAFGSFDGLLSNEENEYGTAL-------DCSCDLEFLE---QGKIVHGFM 109
H +A FD ++ + + + + D + + F E + +V
Sbjct: 157 HRCGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNT 216
Query: 110 IKLGLELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 167
+ G D+ ++ AV P N N MISGYA +G E A +F + MD
Sbjct: 217 VVAGFARMGDM-VTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR-MD----- 269
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+ +V+ T ++ YAK G +D FD K++V +AMI GY
Sbjct: 270 ---QKDVVSWTAMVSAYAKIGDLDTTNELFDHMPVKNLVSWNAMITGY------------ 314
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
N + Y AL + L LE R++P+
Sbjct: 315 ----NHNSRYDEALR-TFQLMMLEG---------------------------RFRPDEAT 342
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+++S A+ G E + W+ +IGKS V + LIDM+AKCG V A
Sbjct: 343 LVSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSI 397
Query: 348 FDRTLDKDVVMRSAMTVGYGLH--------------------------------GLGEEG 375
F + + ++ + M G+ + GL +EG
Sbjct: 398 FYKMETRCIITWTTMISGFAFNRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEG 457
Query: 376 WVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
W +F+ + ++ I+PR +HY +VDLL RA + K I +
Sbjct: 458 WSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL 500
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 113/275 (41%), Gaps = 38/275 (13%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDL---APMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
I + + ++V V L+D+Y +CG A FD +D+DVV ++ IVG +
Sbjct: 137 IVRCGFGSDVFVQNALVDVYHRCGGGGGVGAARQVFDEMVDRDVVSWNS-IVGVYMSSGD 195
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
A G+ E + + +V + G D+ ++ AV
Sbjct: 196 ATGAMGFF------------------EAMPERNVVSWNTVVAGFARMGDM-VTARAVFDR 236
Query: 282 QP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
P N WN MISGYA +G E A +F + MD + +V+ T ++ YAK G
Sbjct: 237 MPSRNAVSWNLMISGYATSGDVEAARSVFDR-MD--------QKDVVSWTAMVSAYAKIG 287
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVV 398
+D FD K++V +AM GY + +E F + G P VV
Sbjct: 288 DLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 347
Query: 399 DLLARAG---YSNHAFKFIMNMPIELRLSVRRALL 430
A+ G Y N FI I L +++ AL+
Sbjct: 348 SACAQLGSVEYCNWISSFIGKSNIHLTVALGNALI 382
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 124/493 (25%), Positives = 196/493 (39%), Gaps = 110/493 (22%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTIVFLDLYHLW 64
V PN T +VL AC L + G +VH +F +GF + GL D +
Sbjct: 138 VRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLID--------MYAK 189
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
R A FDG L+ + + T + F + V M ++G + L+++
Sbjct: 190 CRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTV 249
Query: 125 ----TAVCRY-----------QPNVTLRNAMISGYAKNGYAEEAVKLF-------PKWMD 162
A+ R PNV N MISG+AK G+AEEA+ F K
Sbjct: 250 INAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATR 309
Query: 163 YYIG-----------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199
+G K +NV V + L++MYAKC +D A F+
Sbjct: 310 SSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNS 369
Query: 200 TLDKDVVMRSAMIVGYG----LHEWSAFGSFDGLLSNEENEYG-TALDCSC-DLEFLEQG 253
++++V+ +AM+ G+ E F S+ + +E+ T++ +C L +L+ G
Sbjct: 370 LGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFG 429
Query: 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL-----------------WNAMISGYA 296
+H MIK + S+L ++ V Y + L WNA+I GY
Sbjct: 430 GQLHTVMIK--NKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYV 487
Query: 297 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN---------------------------- 328
+ Y +EA +F + + + E IV+
Sbjct: 488 QEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTC 547
Query: 329 --TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
+ LIDMY KCG V A F ++VV +A+ GY + L EE LF I+ G
Sbjct: 548 AGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSHL-EEAIHLFQEIQMVG 606
Query: 387 IEPRHQHYARVVD 399
++P +A ++D
Sbjct: 607 LKPTEVTFAGLLD 619
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/428 (22%), Positives = 171/428 (39%), Gaps = 101/428 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY----- 130
L + G+ L L L G +VH IK GL+ L+++ A C
Sbjct: 305 LKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAK 364
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------K 159
+ N+ L NAM+ G+A+NG A+E ++ F
Sbjct: 365 QVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLH 424
Query: 160 WMDY------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
++D+ + K+++ +N+ V L+DMYAK G++ A F+ D V +A+IV
Sbjct: 425 YLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIV 484
Query: 214 GYGLHEWS--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
GY E++ AF F ++SN +E + + +++ +QG+ H ++K+GL+
Sbjct: 485 GYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDT 544
Query: 268 ES-------DLLISLTAVCRYQP--------NVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ D+ + V + NV NA+I+GY + + EEA+ LF +
Sbjct: 545 STCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQ 603
Query: 313 DYYIGKSEY-------------------------------RNNVIVNTVLIDMYAKCGS- 340
+ +E ++ +V L+ MY
Sbjct: 604 MVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRF 663
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
D +F + K +V+ +A+ GY E+ + H+R I P +A V L
Sbjct: 664 ADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASV--L 721
Query: 401 LARAGYSN 408
A AG S+
Sbjct: 722 RACAGMSS 729
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 28/258 (10%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--FGSF-----D 227
++ V++D+Y KCG+VD A F R KDV ++++ Y H A SF
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRYQPN 284
G+ NE + L L+ + GK VH + K+G S LI + A CR +
Sbjct: 137 GVRPNEFT-FAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRD 195
Query: 285 VTL------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 332
L W +I+GY ++G+ EAVK+F K + + + + I +I
Sbjct: 196 ARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDK-----MQRVGHVPDQIALVTVI 250
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ 392
+ Y G + A F + + +VV + M G+ G EE F ++K G++
Sbjct: 251 NAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRS 310
Query: 393 HYARVVDLLARAGYSNHA 410
V+ +A N+
Sbjct: 311 SLGSVLSAIASLSMLNYG 328
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 88/418 (21%), Positives = 156/418 (37%), Gaps = 111/418 (26%)
Query: 71 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-------D 119
AF F ++SN +E + + +++ +QG+ H ++K+GL+ + D
Sbjct: 495 AFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLID 554
Query: 120 LLISLTAVCRYQP--------NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY- 170
+ + V + NV NA+I+GY + + EEA+ LF + + +E
Sbjct: 555 MYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVT 613
Query: 171 ------------------------------RNNVIVNTVLIDMYAKCGS-VDLAPMFFDR 199
++ +V L+ MY D +F +
Sbjct: 614 FAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSEL 673
Query: 200 TLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQG 253
K +V+ +A+I GY H A + + S+ ++ + + L + L+ G
Sbjct: 674 QYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTG 733
Query: 254 KIVHGFMIKLGL---ELESDLLISLTAVC-------------RYQPNVTLWNAMISGYAK 297
+ VH + G E+ LI + A C + +V WN+MI G AK
Sbjct: 734 QEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAK 793
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
NGYAEEA+++F + I E + + + C
Sbjct: 794 NGYAEEALEIFKQMEQQSIIPDE--------VTFLGVLSACSHA---------------- 829
Query: 358 MRSAMTVGYGLHGLGEEGWVLFH-HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
G EG +F + + ++PR H +VD+L R G+ N A +FI
Sbjct: 830 ------------GRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFI 875
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 48/206 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-----VCYLFDGLFDRTI 55
+Q+ + P T +L C L +G ++HGQ+ GFL VC ++ +
Sbjct: 602 IQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQ 661
Query: 56 VFLDLYHLWSRTE-------WSAFGS-------------------FDGLLSNEENEYGTA 89
F D L+S + W+A S D +L ++ + +
Sbjct: 662 RFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAT-FASV 720
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC-------------RYQPN 133
L + L+ G+ VH + G E+ LI + A C + +
Sbjct: 721 LRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNS 780
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPK 159
V N+MI G AKNGYAEEA+++F +
Sbjct: 781 VISWNSMIVGLAKNGYAEEALEIFKQ 806
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 84/217 (38%), Gaps = 45/217 (20%)
Query: 247 LEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLWNAM 291
L+ L K++H +K+G+ L+ ++++ L C + +V WN++
Sbjct: 54 LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV--------------------- 330
+S Y +G V+ F ++ + +E+ ++++
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGF 173
Query: 331 ---------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
LIDMYAKC ++ A + FD L+ D V + + GY G E +F
Sbjct: 174 GFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDK 233
Query: 382 IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+++ G P V++ G A K +P
Sbjct: 234 MQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIP 270
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 127/323 (39%), Gaps = 88/323 (27%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGY--GLHEWSAFGSFDGLLSNEE 234
T LI Y +CG +DLA FD+ KDVV+ +AM+ G+ SA FD +
Sbjct: 148 TALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV 207
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
+ T + C+++ ++ + + M + N+ WN MI G
Sbjct: 208 ITWTTMIHGYCNIKDIDAARKLFDAMP--------------------ERNLVSWNTMIGG 247
Query: 295 YAKNGYAEEAVKLFPK-------------------------------WMDYYIGKSEYRN 323
Y +N +E ++LF + W ++ + +
Sbjct: 248 YCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDK 307
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG------------- 370
V V T ++DMY+KCG ++ A FD +K V +AM GY L+G
Sbjct: 308 KVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM 367
Query: 371 ---------------------LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409
L EEG FH +R+ G+ + +HY +VDLL RAG
Sbjct: 368 IEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKE 427
Query: 410 AFKFIMNMPIELRLSVRRALLSA 432
A I NMP E + + LSA
Sbjct: 428 AEDLITNMPFEPNGIILSSFLSA 450
>gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 165/404 (40%), Gaps = 125/404 (30%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G++VH ++K + P+ L A++ Y KNG
Sbjct: 158 GRVVHAQILKSNVS----------------PDDVLYTALVDSYIKNG------------- 188
Query: 162 DYYIGKSEY----RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
D YI + + + NVI +T +I Y G V A F +T++KD+V+ +AMI GY
Sbjct: 189 DVYIARLVFDLMLKKNVICSTSMISGYMNRGLVKDAEEIFRKTVEKDIVVFNAMIEGY-- 246
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
++ +E+ LEF I +
Sbjct: 247 --------------SKTHEHAKK-----SLEFY----------------------IDMQR 265
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+C + PN++ ++++I + E ++ + M K+++ ++ + + LIDMY+K
Sbjct: 266 LC-FSPNISTFSSVIGACSVLAAFEAGQQIQCQLM-----KTKFFTDIRMGSALIDMYSK 319
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG--------------------------- 370
CG D A FD+ +++V ++M GYG +G
Sbjct: 320 CGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQEKHQIQPNFVTFLS 379
Query: 371 ---------LGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
L EEGW +F + R + ++P+ +HYA +VDLL RAG A++F+M MP
Sbjct: 380 ALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLLGRAGSLLQAWEFVMQMPET 439
Query: 421 LRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEK--TDKRPGV 462
V ALLS+ K+ N+ DE K D RPG
Sbjct: 440 PNSDVWAALLSSAKL----HGNVEIACMAADELFKLNADSRPGA 479
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 161/398 (40%), Gaps = 107/398 (26%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS----------LTAVCRY----- 130
Y L D + +G VH ++K GL + +L S L R
Sbjct: 141 YPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKG 200
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ + NAMI GY + G E A +LF D R+ + +I +++CG
Sbjct: 201 GEVDAVCWNAMIDGYLRFGEVEAARELFEGMPD--------RSMISTWNAMISGFSRCGM 252
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
V++A FFD ++D + SAMI DG + C +E
Sbjct: 253 VEVAREFFDEMKERDEISWSAMI--------------DGYIQE-----------GCFMEA 287
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
LE I H + + +P + +++S A G ++
Sbjct: 288 LE---IFHQMQKE-----------------KIRPRKFVLPSVLSACANLGALDQG----- 322
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
+W+ Y ++ + + ++ T L+DMYAKCG +DLA F++ +K+V +AM G +H
Sbjct: 323 RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMH 382
Query: 370 GLGEE--------------------------------GWVLFHHIRK-HGIEPRHQHYAR 396
G E+ G +F+ +RK +G+EP+ +HY
Sbjct: 383 GRAEDAIDLFSKMDIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGC 442
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+VDLL RAG A K + ++P E +V ALL A +
Sbjct: 443 IVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACR 480
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 169/398 (42%), Gaps = 85/398 (21%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLR 137
+LE + GK +HGF +++G E +D+ I+ + + Y + N+
Sbjct: 225 ELECFKAGKEIHGFSMRMGTE--TDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSW 282
Query: 138 NAMISGYAKNGYAEEAVKLF---------PKWMDY-----------YIGKSE-------- 169
NAMI+ YA N EA++ P + + ++G +
Sbjct: 283 NAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVR 342
Query: 170 --YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----LHEWSA 222
+++ V+ LIDMYAKCG + A F+ T KD V + +I+GY L +
Sbjct: 343 IGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNL 401
Query: 223 FGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F L + + +C +L L+QGK VHG + L L S L +S
Sbjct: 402 FSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHG--VALRNHLYSHLFVS------- 452
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
N+++ Y K G + A +LF + + +++ NT+++ Y G +
Sbjct: 453 -------NSLLDFYTKCGRIDIACRLFNQIL--------FKDVASWNTMILG-YGMIGEL 496
Query: 342 DLAPMFF----DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397
+ A F D T+ D+V A+ GL E GW F + +EP HY +
Sbjct: 497 ETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCM 556
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VDLL RAG+ A K I +PI ++ ALL A +I
Sbjct: 557 VDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRI 594
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 56/284 (19%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF--- 226
+ V L+D Y KCGSV F+ T++K+ V +++I G W A +F
Sbjct: 145 SQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMM 204
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---- 281
D + L +LE + GK +HGF +++G E+D+ I+ + + Y
Sbjct: 205 IDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMG--TETDIFIANSLIDMYAKSG 262
Query: 282 -------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY----- 314
+ N+ WNAMI+ YA N EA++ P + +
Sbjct: 263 HSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLP 322
Query: 315 ------YIGKSE----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
++G + +++ V+ LIDMYAKCG + A F+ T KD V
Sbjct: 323 ACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVS 381
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ + +GY + LF +R G +P + V+ A
Sbjct: 382 YNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACA 425
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 108/298 (36%), Gaps = 70/298 (23%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +V V L+ +Y CG ++ A FD ++DVV + +I S +G
Sbjct: 41 FDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTII---------GLLSVNGD 91
Query: 230 LSNEENEYG----------------TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SD 270
+ N Y + L S LE E + +H + +K+GL+ + +
Sbjct: 92 YTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCN 151
Query: 271 LLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD----- 313
L+ C + N WN++I+G A G +A+ F +D
Sbjct: 152 ALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQP 211
Query: 314 -----------------YYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+ GK + ++ + LIDMYAK G A F
Sbjct: 212 NSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIF 271
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
+++V +AM Y L+ L E +++ G P + V+ AR G+
Sbjct: 272 HNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGF 329
>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 152/388 (39%), Gaps = 91/388 (23%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
NA +A A ++ L + ++ K+ V T LI MY KC ++ A F
Sbjct: 55 NAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVF 114
Query: 198 DRTLDKD--VVMRSAMIVGYGLHEWSAFGSF-------DGLLSNEENEYGTALDCSCDLE 248
D V +A+I GY L+ + +G+ N G C+ +
Sbjct: 115 DENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIH 174
Query: 249 FLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLWNAMIS 293
L G +H ++ GL+ + + L+++ C + + WNAMIS
Sbjct: 175 -LGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMIS 233
Query: 294 GYAKNGYAEEAVKLFPKW------------------------------MDYYIGKSEYRN 323
GYA+NG A + L+ K ++ I S +
Sbjct: 234 GYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGF 293
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI- 382
N + LI+MYA+CG++ A FD +K+V+ +A+ GYG+HG GE LF +
Sbjct: 294 NPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMI 353
Query: 383 -----------------------------------RKHGIEPRHQHYARVVDLLARAGYS 407
R +G++P +HY+ VVDLL RAG
Sbjct: 354 SSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRL 413
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
A K I +M +E +V ALL A KI
Sbjct: 414 EEARKLIGSMSVEPDGAVWGALLGACKI 441
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 108/271 (39%), Gaps = 63/271 (23%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW------------------------------MDYYIGK 167
NAMISGYA+NG A + L+ K ++ I
Sbjct: 229 NAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIEL 288
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGS 225
S + N + LI+MYA+CG++ A FD +K+V+ +A+I GYG+H A
Sbjct: 289 SGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQL 348
Query: 226 FDGLLSNEENEYGTAL-----DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
FD ++S++E G A CS G G +E + L
Sbjct: 349 FDEMISSDELPDGAAFVSVLSACS------HAGLTEKGLYYFTAMERDYGL--------- 393
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
QP ++ ++ + G EEA KL IG + V L+ +
Sbjct: 394 -QPGPEHYSCVVDLLGRAGRLEEARKL--------IGSMSVEPDGAVWGALLGACKIHRN 444
Query: 341 VDLAPMFFD-RTLDKDVVMRS-AMTVGYGLH 369
V+LA + F+ R L K+ R+ + G G+H
Sbjct: 445 VELAELAFEKRKLKKEPESRNEELITGMGVH 475
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 119/519 (22%), Positives = 199/519 (38%), Gaps = 138/519 (26%)
Query: 6 VAPNGCTPPLVLKACVALP---SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYH 62
V P+ T V AC P LLMG +VH G L ++ + L + +Y
Sbjct: 191 VEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTL-------VAMYG 243
Query: 63 LWSRTEWSA--FGSFDGLLSNEENEYGTALDCSCDLE-FLEQGKIVHGFMIKLGLELESD 119
+ S GSF+G + + T L C E FLE + + +++ G+E +
Sbjct: 244 KMGKLASSKVLLGSFEG---RDLVTWNTVLSSLCQNEQFLEALEYLREMVLE-GVEPDGF 299
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
+ S+ C + + + + KNG +E N V +
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDE--------------------NSFVGSA 339
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--------FGSFDGLLS 231
L+DMY C V FD D+ + + +AMI GY +E+ GLL+
Sbjct: 340 LVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLA 399
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLTAVCRYQ----- 282
N G C F + + +HGF++K GL+ +++ L+ + + +
Sbjct: 400 NSTTMAGVVPACVRSGAF-SKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRI 458
Query: 283 ------PNVTLWNAMISGYAKNGYAEEA--------------------VKLFP------- 309
++ WN +I+GY + E+A V L P
Sbjct: 459 FGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMT 518
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + Y K+ +V V + L+DMYAKCG + ++ FD+ ++
Sbjct: 519 ILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRN 578
Query: 356 VVMRSAMTVGYGLHGLGE-----------------------------------EGWVLFH 380
V+ + + + YG+HG + EG +F+
Sbjct: 579 VITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFY 638
Query: 381 HIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+++K +G+EP HYA VVDLL RAG A++ I +P
Sbjct: 639 NMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIP 677
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/438 (20%), Positives = 166/438 (37%), Gaps = 82/438 (18%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M V + P+ P +LKA L + +G ++H ++ G+ V D V L
Sbjct: 84 MIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGV--------DSVTVANTL 135
Query: 61 YHLWSRTE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+L+ + + + FD + + + + + C E E M+ +E S
Sbjct: 136 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSS 195
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+S+ C N + ++ G + Y +L N+ I+NT
Sbjct: 196 FTLVSVALAC---SNFPMPEGLLMGKQVHAYGLRKGEL---------------NSFIINT 237
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENE 236
L+ MY K G + + + +D+V + ++ +E A ++
Sbjct: 238 -LVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP 296
Query: 237 YG----TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR-------- 280
G + L LE L GK +H + +K G E+ L+ + C+
Sbjct: 297 DGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRV 356
Query: 281 ----YQPNVTLWNAMISGYAKNGYAEEAVKLF---------------------------- 308
+ + LWNAMI+GYA+N Y EEA+ LF
Sbjct: 357 FDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGA 416
Query: 309 ---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ + ++ K + V L+DMY++ G +D+A F + D+D+V + + G
Sbjct: 417 FSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITG 476
Query: 366 YGLHGLGEEGWVLFHHIR 383
Y E+ ++ H ++
Sbjct: 477 YVFSERHEDALLMLHKMQ 494
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 188/474 (39%), Gaps = 89/474 (18%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
+Q P+ T PL+ KAC L + MG + G + LGF D ++ L +
Sbjct: 98 LQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDS----DIFVSNAVIHLLV 153
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
+ G DG D SC + + +++G+ ++ G E+
Sbjct: 154 ----------SCGDLDGARK--------MFDKSCVRDLVSWNSMINGY-VRRGWAYEALN 194
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
V +P+ ++S A+ E + L + YI ++ + V + L
Sbjct: 195 FYREMKVEGIKPDEVTMIGVVSSCAQ----LEDLDL-GRESHCYIEENGLKLTVPLANAL 249
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEY 237
+DMY KCG+++ A FD +K +V + M+VGY GL + A+ FD + + +
Sbjct: 250 MDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDM-AWKLFDEMPDKDVVPW 308
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297
+ G VH K L L +++ P+ + +S ++
Sbjct: 309 NAMI-----------GGYVHANRGKEALALFNEM-----QAMNINPDEVTMVSCLSACSQ 352
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
G + + W+ +YI K E NV + T LIDMYAKCG + A F ++ +
Sbjct: 353 LGALDVGI-----WIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSL 407
Query: 358 MRSAMTVGYGLHG-----------------------------------LGEEGWVLFHHI 382
+A+ G LHG L EEG F +
Sbjct: 408 TWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQM 467
Query: 383 R-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K + P+ +HY+ +VDLL RAG A + I +MPIE V AL A +I
Sbjct: 468 SSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRI 521
>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
Length = 547
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 131/337 (38%), Gaps = 77/337 (22%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
I K+ ++ V + LIDMYAK G V+ A F+ KD+V +AM+ GY H
Sbjct: 155 ILKNSLESDAYVCSALIDMYAKSGEVEKARRVFESMAGKDLVALNAMVSGYAHH------ 208
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
GL N + +V GF ++G E L +P+
Sbjct: 209 ---GLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFS-QIGEEEMVRELFKEMEANGIEPD 264
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDY----------------------YIGKSEY- 321
V W ++ISG+ +N EEA F + ++ GK +
Sbjct: 265 VVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSATISSLLPACASVGNGRCGKEIHG 324
Query: 322 -------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
+V V T L+DMYAKCG A + F R +++ ++M GY HG E
Sbjct: 325 HSLALGVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSERNSATWNSMIFGYANHGYCNE 384
Query: 375 GWVLFHHIR-------------------------------------KHGIEPRHQHYARV 397
LFH ++ K+GI PR +HYA +
Sbjct: 385 AIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSLFQLMQSKYGIVPRVEHYACM 444
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
VD+ RAG A+ I MP++ L V ALL A +
Sbjct: 445 VDVFGRAGKLAEAYDLIKTMPVKPDLYVWGALLGACR 481
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 108/286 (37%), Gaps = 41/286 (14%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKD-----VVMRSAMIVGYGLHEWSAFGSFD-GLLSNE 233
I YA CG + A + FD+ + V++ + GY S F G L
Sbjct: 69 FIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPS 128
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ----------- 282
E + L L G+ +H ++K LESD + + Y
Sbjct: 129 EYIIPSVLKACGHLSEKTTGRKLHTLILK--NSLESDAYVCSALIDMYAKSGEVEKARRV 186
Query: 283 ------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
++ NAM+SGYA +G AEEA+ L + I + N++ L+ ++
Sbjct: 187 FESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGI-----KPNLVTWNTLVTGFS 241
Query: 337 KCGSVDLAPMFFDRT----LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ 392
+ G ++ F ++ DVV +++ G+ + EE + F + G P
Sbjct: 242 QIGEEEMVRELFKEMEANGIEPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSA 301
Query: 393 HYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ ++ A R G H + +E + VR AL+ +
Sbjct: 302 TISSLLPACASVGNGRCGKEIHGHSLALG--VEKDVYVRTALVDMY 345
>gi|224057531|ref|XP_002299253.1| predicted protein [Populus trichocarpa]
gi|222846511|gb|EEE84058.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 184/483 (38%), Gaps = 140/483 (28%)
Query: 99 LEQGKIVHGFMIKLGLELE----SDLLISLTAVCR------------YQPNVTLRNAMIS 142
L GK VH +++ G +L + L+ + A C PNV N M+
Sbjct: 40 LRGGKQVHAWLVTRGTDLRILSLNSKLVGMYASCGDVKSATLVFKRIRNPNVFALNWMVL 99
Query: 143 GYAKNGYAEEAV----------------------KLFPKWMDYYIGKS--------EYRN 172
A GY +EA+ K F +D GK + +
Sbjct: 100 ASAFEGYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDLNKGKEVHSMVKQLGFES 159
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
+V V L+DMY+KCG + A FDR +D+V ++MI GY G + L
Sbjct: 160 DVCVANALVDMYSKCGCIGYARTVFDRMAKRDIVSWTSMISGY-----CNVGKIEEALVL 214
Query: 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIK-LGLELESDLLISLTAVCRYQ---PNVTLW 288
E LE LE +I +SD SL + + P++ W
Sbjct: 215 FER---------MKLEGLEPNDFTWNALISGYARRGDSDGAFSLLSKMTREGLVPDLVTW 265
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKS----EYR 322
NAMI+G+ + A +A KLF + + G++ YR
Sbjct: 266 NAMIAGFVQGERAGDAFKLFQDMLVLGVKPNLVTVAGLLPACGMVSSIQRGRAIHGLVYR 325
Query: 323 -----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
+N + + LIDMY++CGS A F++ +K+V +AM YG HG+
Sbjct: 326 LEFDISNAFIASALIDMYSECGSFKEARTVFEKIHNKNVASWNAMIGCYGKHGMVNTSIQ 385
Query: 378 LFHHIRKHGIEP------------------------------------RHQHYARVVDLL 401
LF + GI+ + +HYA VVD+L
Sbjct: 386 LFERMHGEGIQANDVTLLCVLSACSHSGYVEKGLEIFWSMKERYMVDRKKEHYACVVDML 445
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQ--WENMLQTIRGIDEGEKTD-K 458
+R+G A++ + MPIE+ S+ A + I ++ E M ID+ + D K
Sbjct: 446 SRSGRLVDAYELVKEMPIEVTKSIAGAFFNGCMIHGRRDLAEKM------IDDVTRGDLK 499
Query: 459 RPG 461
+PG
Sbjct: 500 KPG 502
>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 662
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 151/368 (41%), Gaps = 88/368 (23%)
Query: 138 NAMISGYAKNGYAEEAVKLF---PKWMDYYIGKS-EYRNNVIVNTVLIDMYAKCGSVDLA 193
N +I+GY + G +EA LF P + D G++ + NV+ +I Y K G V A
Sbjct: 246 NTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDVISA 305
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253
FD+ D+D + MI GY +H +L EE S D L
Sbjct: 306 RKLFDQMPDRDSFSWNTMISGY-VH----------VLDMEEASNLFHKMPSPDT--LSWN 352
Query: 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW-- 311
++ G+ LEL D + Q N+ WN++I+GY KNG A+ LF +
Sbjct: 353 LMISGYAQSGSLELAHDFFERMP-----QKNLVSWNSVIAGYEKNGDYIGAINLFIQMQV 407
Query: 312 --------------------MDYYIGKSEYR-------NNVIVNTVLIDMYAKCGSV-DL 343
+D +G ++ +V +N LI MY++CG++ +
Sbjct: 408 EGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKTVIPDVPLNNALITMYSRCGAIFEA 467
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------- 384
+F++ L K+V+ +AM GY HG E LF +R
Sbjct: 468 RTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFKLMRSFKVQPTYITFISVLNACAH 527
Query: 385 -----------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
+G+EPR +H+A +VD++ R G A I +M IE +V
Sbjct: 528 AGLVEEGRRIFESMVSDYGVEPRVEHFASLVDIVGRQGQLEEALDLINSMTIEPDKAVWG 587
Query: 428 ALLSAWKI 435
ALL A ++
Sbjct: 588 ALLGASRV 595
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 144/365 (39%), Gaps = 66/365 (18%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS--- 189
N N+MISGY K G +A KLF + + +V+ ++I Y C
Sbjct: 77 NTVTWNSMISGYVKRGEMTKARKLFDEMPE---------RDVVSWNLIISGYVSCRGKRF 127
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDL 247
++ FD+ ++ V + MI GY + A G F+ + + +
Sbjct: 128 IEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSG---- 183
Query: 248 EFLEQGKIVHG--FMIKL-------------GLELESDLLISLTAVCRYQPN-------V 285
FL+ G +V F ++ GL S+L + + Y N V
Sbjct: 184 -FLQNGDVVRAIEFFKRMPERDVTSLSALVSGLIQNSELDQAERILLDYGNNGGSKEYLV 242
Query: 286 TLWNAMISGYAKNGYAEEAVKLF---PKWMDYYIGKS-EYRNNVIVNTVLIDMYAKCGSV 341
+N +I+GY + G +EA LF P + D G++ + NV+ +I Y K G V
Sbjct: 243 HAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDV 302
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG-EEGWVLFHHIRKHGIEPRHQHYARVVDL 400
A FD+ D+D + M GY +H L EE LFH + P + ++
Sbjct: 303 ISARKLFDQMPDRDSFSWNTMISGY-VHVLDMEEASNLFHKMPS----PDTLSWNLMISG 357
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGID-------EG 453
A++G A F MP + L +W + +E I I+ EG
Sbjct: 358 YAQSGSLELAHDFFERMP--------QKNLVSWNSVIAGYEKNGDYIGAINLFIQMQVEG 409
Query: 454 EKTDK 458
EK+D+
Sbjct: 410 EKSDR 414
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 128/487 (26%), Positives = 200/487 (41%), Gaps = 93/487 (19%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCY-------------------- 45
V P T V +C AL +L +G ++H + LG C
Sbjct: 68 VLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAK 127
Query: 46 -LFDGLFDRTI----VFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 100
+FD + R+I + + L+ R + A F+ + + + + + F +
Sbjct: 128 IVFDRMRLRSISSWNIMISLHMHGGRADL-ALAQFEQMSERDVVTWNSMITGYSQHGFDK 186
Query: 101 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL-------------------RNAMI 141
+ + M++ L+ + L S+ + C N+ L +NA+I
Sbjct: 187 EALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALI 246
Query: 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201
S YAK G E A + + G S+ NVI T L+D Y K G++ A FD
Sbjct: 247 SMYAKTGGVEIAQSIVEQS-----GISDL--NVIAFTALLDGYVKLGNITPARHIFDSLK 299
Query: 202 DKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNE---ENEYGTA--LDCSCDLEFLEQG 253
D DVV +AMIVGY GL++ A F +++ E N + A L S ++ L G
Sbjct: 300 DSDVVAWTAMIVGYVQNGLND-DAMELFR-IMAKEGPRPNSFTLAAMLSVSSNVASLNHG 357
Query: 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313
K +H I+ G L +V++ NA+I+ YAK G +A ++F
Sbjct: 358 KQIHASAIRSGENL----------------SVSVGNALITMYAKAGSITDAQQVFNLIQ- 400
Query: 314 YYIGKSEYRNNVIVN-TVLIDMYAKCG----SVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
RN V+ T +I + G S++L + D + +
Sbjct: 401 --------RNKDTVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSACTH 452
Query: 369 HGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
GL E+G F+ + H IEP HYA ++DL RAG AF FI NMPIE +
Sbjct: 453 VGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGRAGLLQEAFSFIENMPIEPDVIAWG 512
Query: 428 ALLSAWK 434
+LLS+ K
Sbjct: 513 SLLSSCK 519
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 162/374 (43%), Gaps = 65/374 (17%)
Query: 88 TALDCSCD-LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK 146
T + SC L L+ GK +H F+IKLGL + C V + N++++ YAK
Sbjct: 76 TNVFASCAALGALDIGKKIHSFVIKLGL-----------SGC-----VPVANSLLNMYAK 119
Query: 147 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206
G + A +F + I ++I ++ G DLA F++ ++DVV
Sbjct: 120 AGDSVMAKIVFDRMRLRSISSWN---------IMISLHMHGGRADLALAQFEQMSERDVV 170
Query: 207 MRSAMIVGYGLH--EWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFM 260
++MI GY H + A F +L + + + L ++E L GK +H ++
Sbjct: 171 TWNSMITGYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYI 230
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
I+ ++ + NA+IS YAK G E A + + G S+
Sbjct: 231 IRTEFDISG----------------VVQNALISMYAKTGGVEIAQSIVEQS-----GISD 269
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
NVI T L+D Y K G++ A FD D DVV +AM VGY +GL ++ LF
Sbjct: 270 L--NVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFR 327
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE----LRLSVRRALLSAWK-- 434
+ K G P A ++ + + NH K I I L +SV AL++ +
Sbjct: 328 IMAKEGPRPNSFTLAAMLSVSSNVASLNHG-KQIHASAIRSGENLSVSVGNALITMYAKA 386
Query: 435 ---IPMQQWENMLQ 445
QQ N++Q
Sbjct: 387 GSITDAQQVFNLIQ 400
>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
Length = 851
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 131/338 (38%), Gaps = 97/338 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MI+GYA+ G E+A +LF M+ +N V N +I Y +CG ++ A FF
Sbjct: 159 NTMITGYARRGEMEKARELFYSMME--------KNEVSWN-AMISGYIECGDLEKASHFF 209
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
+ VV +AMI G
Sbjct: 210 KVAPVRGVVAWTAMITG------------------------------------------- 226
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI- 316
+M +EL + +T N+ WNAMISGY +N E+ +KLF ++ I
Sbjct: 227 -YMKAKKVELAEAMFKDMTV----NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIR 281
Query: 317 GKSEYRNNVIVN---TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
S ++ ++ T LI MY KCG + A F+ KDVV +AM GY HG +
Sbjct: 282 PNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNAD 341
Query: 374 EGWVLFHH------------------------------------IRKHGIEPRHQHYARV 397
+ LF +R + +EP+ HY +
Sbjct: 342 KALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCM 401
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VDLL RAG A K I +MP +V LL A ++
Sbjct: 402 VDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRV 439
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 104 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163
++ G+M +EL + +T N+ NAMISGY +N E+ +KLF ++
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTV----NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEE 278
Query: 164 YI-GKSEYRNNVIVN---TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
I S ++ ++ T LI MY KCG + A F+ KDVV +AMI GY H
Sbjct: 279 GIRPNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQH 337
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 113/444 (25%), Positives = 172/444 (38%), Gaps = 122/444 (27%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 130
+S ++ + L L FL+ G +HGF+ K G+ SDL + + Y
Sbjct: 118 ISVDKFSFSLVLKACSRLGFLKGGMQIHGFLRKTGIW--SDLFLQNCLIGLYLKCGCLGF 175
Query: 131 ---------QPNVTLRNAMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNT 178
Q + N+MI GY K G E A +LF P+ M N+I
Sbjct: 176 ARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREM----------KNLISWN 225
Query: 179 VLIDMYAKCGS-VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEEN 235
+I YA+ V++A F +KD++ +++I GY H A F + +
Sbjct: 226 SMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVV 285
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
+ T +D L F+ + K + M +V +N+M++GY
Sbjct: 286 TWATMIDGYAKLGFVHKAKTLFDQMP--------------------HRDVVAYNSMMAGY 325
Query: 296 AKNGYAEEAVKLFP-----------------------------KWMDY--YIGKSEYRNN 324
+N + EA+++F K MD YI + ++
Sbjct: 326 VQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLG 385
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE----------- 373
+ LIDMY+KCGS+ A F+ +K + +AM G +HGLGE
Sbjct: 386 GKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIER 445
Query: 374 ------------------------EGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSN 408
EG + F + RKH IEPR QHY +VDLL+R G
Sbjct: 446 RSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIE 505
Query: 409 HAFKFIMNMPIELRLSVRRALLSA 432
A I MPIE + R L+A
Sbjct: 506 LAKNLIEEMPIEPNDVIWRTFLTA 529
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 23/242 (9%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGLL 230
NV+V T L+DMYAKCG V LA + FD K+ V + MI GY SA FD +
Sbjct: 131 NVMVGTALVDMYAKCGKVQLARLIFDDLKVKNSVSWNTMIDGYMRNGETGSAMELFDEMP 190
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
+ + +D F+++G + LE ++ +S + +P+ A
Sbjct: 191 EKDAISWTVFID-----GFIKKGHF------EQALEWFREMQVS-----KVEPDYVTIIA 234
Query: 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
++S A G + W+ Y+ + E+RNNV + LIDMY++CG ++LA F +
Sbjct: 235 VLSACANLGALGLGL-----WIHRYVLEKEFRNNVRIGNSLIDMYSRCGCIELARQVFHK 289
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
L + +V +++ VG+ +G EE F ++K G +P + + + AG +
Sbjct: 290 MLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPDGVSFTGALTACSHAGMVDEG 349
Query: 411 FK 412
K
Sbjct: 350 LK 351
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 101/248 (40%), Gaps = 58/248 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALP--SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL 58
M++A V PN T ++ C P +GP +H + LG C + G +
Sbjct: 85 MRLAAVEPNHITFATLISFCADFPFQGKSIGPSIHAYVRKLGLDTCNVMVG-----TALV 139
Query: 59 DLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
D+Y + + + FD L + T +D ++ G+ G ++L E+
Sbjct: 140 DMYAKCGKVQLARL-IFDDLKVKNSVSWNTMID-----GYMRNGET--GSAMELFDEMPE 191
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK------------------- 159
IS T I G+ K G+ E+A++ F +
Sbjct: 192 KDAISWTV-------------FIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIAVLSA 238
Query: 160 -----------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 208
W+ Y+ + E+RNNV + LIDMY++CG ++LA F + L + +V
Sbjct: 239 CANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDMYSRCGCIELARQVFHKMLKRTLVSW 298
Query: 209 SAMIVGYG 216
+++IVG+
Sbjct: 299 NSIIVGFA 306
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 162/410 (39%), Gaps = 125/410 (30%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW------MDYY---------------IGK-- 167
+P++ N +IS YA G A+ LF MD + IG+
Sbjct: 102 EPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLH 161
Query: 168 -----SEYRNNVIVNTVLIDMYAKCGSVDLAP-MFFDRTLDKDVVMRSAMIVGYGLHE-- 219
S + + V VN L+ Y K G +D A +F+ +D V ++MIV YG H+
Sbjct: 162 SVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEG 221
Query: 220 WSAFGSFDGLLSNEEN-------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL- 271
A G F ++ N TA C LE L G HG +IK G S +
Sbjct: 222 SKALGLFQEMVRRGLNVDMFTLASVLTAFTC---LEDLSGGLQFHGQLIKTGFHQNSHVG 278
Query: 272 --LISLTAVCR-------------YQPNVTLWNAMISGYAKNG-YAEEAVKLFP------ 309
LI L + C +P++ LWN M+SGY++N + E+A++ F
Sbjct: 279 SGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIG 338
Query: 310 ------------------------KWMDYYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLA 344
K + KS+ +N I V+ LI MY+KCG++ A
Sbjct: 339 YRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDA 398
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLG-------------------------------- 372
FDR + + V ++M GY HG+
Sbjct: 399 RRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHT 458
Query: 373 ---EEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
EEGW F+ ++ K IEP +HY+ ++DLL RAG + A I MP
Sbjct: 459 GRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508
>gi|115479139|ref|NP_001063163.1| Os09g0413300 [Oryza sativa Japonica Group]
gi|113631396|dbj|BAF25077.1| Os09g0413300 [Oryza sativa Japonica Group]
Length = 810
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 158/355 (44%), Gaps = 86/355 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
K + + ++V + L MY++C +V + F+ ++D V +AM+ G+ H S AF
Sbjct: 397 KEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFL 456
Query: 225 SFDGLLSN---EENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELE--SDLLISLTAV 278
+F ++ + ++ TA+ +C+ E L +GK VHG +++ E +D IS+ +
Sbjct: 457 TFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRVYGETTFINDCFISMYSK 516
Query: 279 CR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------- 309
C+ + + +W++MISGYA NG EEA+ LF
Sbjct: 517 CQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSI 576
Query: 310 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
K + Y K+ ++ V++ L+ +Y++ G++D + FD D+
Sbjct: 577 LSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDL 636
Query: 357 VMRSAMTVGYGLH-----------------------------------GLGEEGWVLFHH 381
V + + GY H GL E+G+ F+
Sbjct: 637 VAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFNYFNS 696
Query: 382 IRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+R +G+EP QHY +VDLL R+G A F+ +MP++ L V LL+A ++
Sbjct: 697 MRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLLAACRV 751
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 143/366 (39%), Gaps = 101/366 (27%)
Query: 88 TALDCSCDL-EFLEQGKIVHGFMIKLGLELE--SDLLISLTAVC------RYQPNVTLR- 137
TA+ +C+ E L +GK VHG +++ E +D IS+ + C R + T R
Sbjct: 474 TAILSACNRPECLLKGKEVHGHTLRVYGETTFINDCFISMYSKCQGVQTARRIFDATPRK 533
Query: 138 -----NAMISGYAKNGYAEEAVKLFP------------------------------KWMD 162
++MISGYA NG EEA+ LF K +
Sbjct: 534 DQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLH 593
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS- 221
Y K+ ++ V++ L+ +Y++ G++D + FD D+V + +I GY H S
Sbjct: 594 GYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQ 653
Query: 222 -AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
A FD M++LG+ ++ +L+S+ + C
Sbjct: 654 NALAMFD-------------------------------LMVQLGVRPDTVVLVSVLSAC- 681
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
++NG E+ F Y + E ++ ++D+ + G
Sbjct: 682 ---------------SRNGLVEQGFNYFNSMRTAYGVEPELQHYC----CMVDLLGRSGR 722
Query: 341 VDLAPMFFDR-TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
+ A F D + D+++ S + +H G + + IR+ + +A + +
Sbjct: 723 LAEAKYFVDSMPMKPDLMVWSTLLAACRVHDDTVLGRFVENKIREGNYD--SGSFATLSN 780
Query: 400 LLARAG 405
+LA +G
Sbjct: 781 ILANSG 786
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 121/482 (25%), Positives = 183/482 (37%), Gaps = 140/482 (29%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QP 132
LD L+ GK H +IK+G SD I V Y +
Sbjct: 169 LDACSSPAGLKLGKEFHAQVIKVGFV--SDFRIGTALVSMYVKGGSMDGARQVFDGLYKR 226
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYYI-------------GKSEY 170
+V+ N MI GYAK+G E+A +LF P + + GK+ +
Sbjct: 227 DVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVH 286
Query: 171 R--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--W 220
++V V T LI MY CGS++ A FD+ +DVV + MI GY +
Sbjct: 287 AQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIE 346
Query: 221 SAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
AFG F + + + Y ++ L + +H +++ G +DLL+
Sbjct: 347 DAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFG--TDLLVDTA 404
Query: 277 AVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PK 310
V Y + +V W+AMI Y +NG EEA + F P
Sbjct: 405 LVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPD 464
Query: 311 WMDY--------YIG-------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ Y ++G K++ +++ V LI+M K GS++ A F+
Sbjct: 465 VVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFE 524
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------------------- 384
+ +DVV + M GY LHG E LF + K
Sbjct: 525 NMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEE 584
Query: 385 -----------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
GI P + Y +VDLL RAG + A I MP++ S+ LL+A
Sbjct: 585 GRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAAC 644
Query: 434 KI 435
+I
Sbjct: 645 RI 646
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 138/318 (43%), Gaps = 70/318 (22%)
Query: 154 VKLFPKWM---DYYIGKSEYRNNVIVN---------TVLIDMYAKCGSVDLAPMFFDRTL 201
VKLF + M D +GK + R+++I + LI +++ CG++ A FD
Sbjct: 65 VKLFQRCMMLRDAGLGK-QVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVE 123
Query: 202 DKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNEENE-----YGTALDCSCDLEFLEQGK 254
+K VV +A+I GY H AF F ++ +E E + LD L+ GK
Sbjct: 124 NKTVVTWNAIIAGYAQLGHVKEAFALFRQMV-DEAMEPSIITFLIVLDACSSPAGLKLGK 182
Query: 255 IVHGFMIKLGLELESDLLISLTAVCR-----------------YQPNVTLWNAMISGYAK 297
H +IK+G SD I V Y+ +V+ +N MI GYAK
Sbjct: 183 EFHAQVIKVG--FVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAK 240
Query: 298 NGYAEEAVKLF---------PKWMDYYI-------------GKSEYR--------NNVIV 327
+G E+A +LF P + + GK+ + ++V V
Sbjct: 241 SGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRV 300
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
T LI MY CGS++ A FD+ +DVV + M GY + E+ + LF +++ GI
Sbjct: 301 ATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGI 360
Query: 388 EPRHQHYARVVDLLARAG 405
+P Y +++ A +
Sbjct: 361 QPDRITYIHIINACASSA 378
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 130/297 (43%), Gaps = 52/297 (17%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLL--- 230
V T L+++Y KCGS+ A + FD DV + MI GY H A + +
Sbjct: 48 VETKLLNLYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVS 107
Query: 231 -SNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------ 279
+N +N Y + L+ L L +GK+++ +I G E++ + LI++ C
Sbjct: 108 STNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIEDA 167
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------------------------- 308
+ N+ W AM+SGYA+ G+A+EA+++F
Sbjct: 168 RRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQL 227
Query: 309 -----PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
K + YI + ++V LIDMYAKCGS+ A FD+ L +DVV +
Sbjct: 228 SDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAI 287
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
GY +G +E LF ++ G++ + ++ A+ GY + + M +
Sbjct: 288 AGYAQNGRFDECMELFRKMQCAGLKIDVITWNTLITAYAQNGYGDQTLELFQQMQLR 344
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 121/299 (40%), Gaps = 101/299 (33%)
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
L+LYH + + N +N Y + L+ L L +GK+++ +I G E+
Sbjct: 97 LELYHQMQKVSST----------NPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEM 146
Query: 117 E---SDLLISLTAVC-------RYQPNVTLRN-----AMISGYAKNGYAEEAVKLF---- 157
+ + LI++ C R + RN AM+SGYA+ G+A+EA+++F
Sbjct: 147 DVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQ 206
Query: 158 --------------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
K + YI + ++V LIDMYAKCGS+
Sbjct: 207 GEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIG 266
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251
A FD+ L +DVV + I GY + G FD E E + C+
Sbjct: 267 SAQKVFDKMLQRDVVSWNVAIAGYAQN-----GRFD-----ECMELFRKMQCA------- 309
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
GL+++ V WN +I+ YA+NGY ++ ++LF +
Sbjct: 310 ------------GLKID----------------VITWNTLITAYAQNGYGDQTLELFQQ 340
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 100/236 (42%), Gaps = 55/236 (23%)
Query: 250 LEQGKIVHGFMIKLGL----ELESDLLISLTAVCRYQPNVTL------------WNAMIS 293
L + K VH M+ G+ +E+ LL +L C P+ L WN MI
Sbjct: 27 LAEAKQVHAHMLLTGILRIPSVETKLL-NLYVKCGSLPDARLAFDNMTKGDVFPWNVMIG 85
Query: 294 GYAKNGYAEEAVKLFPKWM-------DYYI----------------GKSEYRN------- 323
GY K+G EA++L+ + D Y GK Y
Sbjct: 86 GYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCE 145
Query: 324 -NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+VIV LI+M+ KCGS++ A FD+ ++++V +AM GY G +E +F+ +
Sbjct: 146 MDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEM 205
Query: 383 RKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ ++ + A V+ A + G H +I+ ++L + V AL+ +
Sbjct: 206 QGEDVKANYVTVASVLPACAQLSDLQQGKEIHG--YIIRRGLDLGIVVGNALIDMY 259
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 141/346 (40%), Gaps = 84/346 (24%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGL 229
++ V T LIDMY KCG + A FD D++VV +AM+VGY A FD +
Sbjct: 161 QDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEM 220
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV----------- 278
+ + L + L + V M + + + ++
Sbjct: 221 PHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFD 280
Query: 279 CRYQPNVTLWNAMISGYAKNGYAEEAVKLF------------------------------ 308
C + +V W+A+ISGY +NG +A+++F
Sbjct: 281 CSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLEL 340
Query: 309 PKWMDYYIGK---SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+W+D Y+ K +++VI L+DM AKCG+++ A FD +DVV+ +M G
Sbjct: 341 AQWVDSYVSKICIDLQQDHVI--AALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQG 398
Query: 366 YGLHGLGEEGWVLFHHI------------------------------------RKHGIEP 389
+HG GEE LF+ + +K+ I P
Sbjct: 399 LSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISP 458
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA +VDLL+R+G+ A++ I +P E ALL A K+
Sbjct: 459 LPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKL 504
>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g18840-like [Cucumis
sativus]
Length = 1096
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 151/382 (39%), Gaps = 107/382 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
Q +V N MISG+ +NGY EE++KLF + D +G +E+
Sbjct: 642 QNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKE 701
Query: 171 ------RNNVIVN----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+N +I N + L+D+Y KC ++ A ++V ++MIVGY
Sbjct: 702 VHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSMIVGYSSQGN 761
Query: 221 SAFGS--FDGLLSNEENE---------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
A FD L +E+N Y C E L + + K +
Sbjct: 762 MAEARKLFDSL--DEKNSAVWTALFFGYVKLQQCEAVFELLSEYR-------KEAKVPDV 812
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
+LIS+ C Q A++ G K + Y+ ++ + + + +
Sbjct: 813 LILISIIGACAIQA------ALVPG---------------KQIHSYMLRAGIKLDTKLTS 851
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
L+DMY+KCGS+ A F DKD ++ + M GY HG E LF + KHG +P
Sbjct: 852 SLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKP 911
Query: 390 ------------RH------------------------QHYARVVDLLARAGYSNHAFKF 413
RH HYA ++DL RA + A +F
Sbjct: 912 DAITFVALLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEF 971
Query: 414 IMNMPIELRLSVRRALLSAWKI 435
+ +PI+L + A L+A +I
Sbjct: 972 MRKIPIQLDAVIWGAFLNACRI 993
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 131/337 (38%), Gaps = 96/337 (28%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ P + + N +I+ YAK+G +A KLF + + NV +I Y K +
Sbjct: 442 FTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPE---------RNVFSWNAIIAAYVKSHN 492
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGL---HEWSAFGSF------DGLLSNEENEYGTA 240
+ A FD + KD+V ++M+ GY ++ A G F ++ +E T
Sbjct: 493 LRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITM 552
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY---------------- 281
L+ + L + GK +H FM+K +L + LI + + C +
Sbjct: 553 LNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVD 612
Query: 282 -----------------------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
Q +V WN MISG+ +NGY EE++KLF +
Sbjct: 613 SVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMA 672
Query: 313 DYYIGKSEY--------------------------RNNVIVN----TVLIDMYAKCGSVD 342
D +G +E+ +N +I N + L+D+Y KC ++
Sbjct: 673 DEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMR 732
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
A ++V ++M VGY G E LF
Sbjct: 733 YAKSVNSELRMQNVYSITSMIVGYSSQGNMAEARKLF 769
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/435 (23%), Positives = 175/435 (40%), Gaps = 124/435 (28%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK---NGYAE 151
DL F G+ VHGF+++LG++ DL NA+++ YAK G
Sbjct: 120 DLRF---GESVHGFIVRLGMDC--DLYTG--------------NALMNMYAKLLGMGSKI 160
Query: 152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
+F + + +V T ++ +D F+ KDVV + +
Sbjct: 161 SVGNVFDEMPQRTSNSGD--EDVKAETCIMPF-----GIDSVRRVFEVMPRKDVVSYNTI 213
Query: 212 IVGY---GLHEWS-----AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
I GY G++E + G+ D L + + L + + +GK +HG++I+
Sbjct: 214 IAGYAQSGMYEDALRMVREMGTTD--LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRK 271
Query: 264 GLELESDLLISLTAVCRYQPNVTL-----------------WNAMISGYAKNGYAEEAVK 306
G++ SD+ I + V Y + + WN++++GY +NG EA++
Sbjct: 272 GID--SDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALR 329
Query: 307 LFP------------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYA 336
LF K + Y+ + + +N+ + + L+DMY+
Sbjct: 330 LFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYS 389
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----- 391
KCG++ A FDR D V +A+ +G+ LHG G E LF +++ G++P
Sbjct: 390 KCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVA 449
Query: 392 -------------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+HYA V DLL RAG A+ FI M +E
Sbjct: 450 VLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVE 509
Query: 421 LRLSVRRALLSAWKI 435
SV LLS+ +
Sbjct: 510 PTGSVWSTLLSSCSV 524
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 91/357 (25%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI---------------- 175
P++ L A I+ + NG ++A L+ + + I +E+ + +
Sbjct: 93 PDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHV 152
Query: 176 ----------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAF 223
V T L+D+YAK G V A FDR ++ +V +AMI Y +A
Sbjct: 153 LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 212
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI---SLTAVCR 280
FD + + + +D G HGF +D L+ L A +
Sbjct: 213 ALFDSMCERDIVSWNVMID----------GYAQHGF--------PNDALMLFQKLLAEGK 254
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+P+ A +S ++ G E +W+ ++ S R NV V T LIDMY+KCGS
Sbjct: 255 PKPDEITVVAALSACSQIGALETG-----RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGS 309
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------ 382
++ A + F+ T KD+V +AM GY +HG ++ LF+ +
Sbjct: 310 LEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQ 369
Query: 383 -------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+++GI+P+ +HY +V LL RAG A++ I NM ++
Sbjct: 370 ACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD 426
>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g18840-like [Cucumis sativus]
Length = 1096
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 151/382 (39%), Gaps = 107/382 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
Q +V N MISG+ +NGY EE++KLF + D +G +E+
Sbjct: 642 QNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKE 701
Query: 171 ------RNNVIVN----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+N +I N + L+D+Y KC ++ A ++V ++MIVGY
Sbjct: 702 VHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVNSELRMQNVYSITSMIVGYSSQGN 761
Query: 221 SAFGS--FDGLLSNEENE---------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
A FD L +E+N Y C E L + + K +
Sbjct: 762 MAEARKLFDSL--DEKNSVVWTALFFGYVKLQQCEAVFELLSEYR-------KEAKVPDV 812
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
+LIS+ C Q A++ G K + Y+ ++ + + + +
Sbjct: 813 LILISIIGACAIQA------ALVPG---------------KQIHSYMLRAGIKLDTKLTS 851
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
L+DMY+KCGS+ A F DKD ++ + M GY HG E LF + KHG +P
Sbjct: 852 SLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKP 911
Query: 390 ------------RH------------------------QHYARVVDLLARAGYSNHAFKF 413
RH HYA ++DL RA + A +F
Sbjct: 912 DAITFVALLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEF 971
Query: 414 IMNMPIELRLSVRRALLSAWKI 435
+ +PI+L + A L+A +I
Sbjct: 972 MRKIPIQLDAVIWGAFLNACRI 993
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 131/337 (38%), Gaps = 96/337 (28%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ P + + N +I+ YAK+G +A KLF + + NV +I Y K +
Sbjct: 442 FTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPE---------RNVFSWNAIIAAYVKSQN 492
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGL---HEWSAFGSF------DGLLSNEENEYGTA 240
+ A FD + KD+V ++M+ GY ++ A G F ++ +E T
Sbjct: 493 LRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITM 552
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY---------------- 281
L+ + L + GK +H FM+K +L + LI + + C +
Sbjct: 553 LNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVD 612
Query: 282 -----------------------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
Q +V WN MISG+ +NGY EE++KLF +
Sbjct: 613 SVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMA 672
Query: 313 DYYIGKSEY--------------------------RNNVIVN----TVLIDMYAKCGSVD 342
D +G +E+ +N +I N + L+D+Y KC ++
Sbjct: 673 DEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMR 732
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
A ++V ++M VGY G E LF
Sbjct: 733 YAESVNSELRMQNVYSITSMIVGYSSQGNMAEARKLF 769
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 171/432 (39%), Gaps = 114/432 (26%)
Query: 76 DGLLSNEENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRY 130
D S+ N Y + L+ + LE GK +H + +LG+ DL L++ +VC
Sbjct: 49 DSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNS 108
Query: 131 ------------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY--------------- 163
+ N+ L N +I YA NG E A+ L+ + ++Y
Sbjct: 109 LRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKA 168
Query: 164 -----YIG----------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 208
IG +S + +V V L+DMYAKCG V A FD+ +D+D V+
Sbjct: 169 CSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLW 228
Query: 209 SAMIVGYGLH-----------EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
++M+ Y + E +A G + E T + S D+ L G+ +H
Sbjct: 229 NSMLAAYAQNGHPDESLSLCCEMAAKG-----VRPTEATLVTVISSSADIACLPHGREIH 283
Query: 258 GFMIKLGLELESDL---LISLTAVC------------RYQPNVTLWNAMISGYAKNGYAE 302
GF + G + + LI + A C + V WNA+I+GYA +G A
Sbjct: 284 GFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAV 343
Query: 303 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
EA+ LF + M K +++ + A C R LD+
Sbjct: 344 EALDLFERMM-----KEAQPDHI----TFVGALAACSR--------GRLLDE-------- 378
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
G L+ L +R I P +HY +VDLL G + A+ I M +
Sbjct: 379 --GRALYNL---------MVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPD 427
Query: 423 LSVRRALLSAWK 434
V ALL++ K
Sbjct: 428 SGVWGALLNSCK 439
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 156/382 (40%), Gaps = 106/382 (27%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLG--------------FLVC-------YLFDGLFDRT 54
+L++C++ +L G ++H ++ LG + VC +LFD +
Sbjct: 64 LLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGN 123
Query: 55 IVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALD----------CSCDLEFLEQ 101
+ ++ + W+ +A + +L EYG D CS L + +
Sbjct: 124 LFLWNVLIRAYAWNGPHETAISLYHQML-----EYGLKPDNFTLPFVLKACSA-LSTIGE 177
Query: 102 GKIVHGFMIKLGLELE---SDLLISLTAVC------RY------QPNVTLRNAMISGYAK 146
G+++H +I+ G E + L+ + A C R+ + L N+M++ YA+
Sbjct: 178 GRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQ 237
Query: 147 NGYAEEAVKLFPKWMDYYIGKSE------------------------------YRNNVIV 176
NG+ +E++ L + + +E ++ N V
Sbjct: 238 NGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKV 297
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNEE 234
T LIDMYAKCGSV +A + F+R +K VV +A+I GY +H + A F+ ++ +
Sbjct: 298 KTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEAQ 357
Query: 235 NEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
++ T AL L++G+ ++ M++ CR P V + M
Sbjct: 358 PDHITFVGALAACSRGRLLDEGRALYNLMVR---------------DCRINPTVEHYTCM 402
Query: 292 ISGYAKNGYAEEAVKLFPKWMD 313
+ G +EA L + MD
Sbjct: 403 VDLLGHCGQLDEAYDLI-RQMD 423
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 121/515 (23%), Positives = 204/515 (39%), Gaps = 125/515 (24%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSA 71
T P VLKAC +L+ G ++H +F LGF +D V L H++SR +
Sbjct: 177 TFPPVLKAC---QTLVDGRKIHCWVFKLGFQ--------WD-VFVAASLIHMYSRFGFVG 224
Query: 72 FGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 129
FD + + + + Q V M G+ ++S + S+ VC
Sbjct: 225 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCA 284
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+++ + Y+ K + V+ LI+MYAK G+
Sbjct: 285 QLGDIST---------------------ATLIHLYVIKHGLEFELFVSNALINMYAKFGN 323
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF-----DGLLSNEENEYGTALD 242
+ A F + +DVV +++I Y ++ +A G F +GL + A
Sbjct: 324 LGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASI 383
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELES--------DLLISLTAVCRYQP--------NVT 286
+ ++ + + VHGF+++ G +E+ D+ L + +V
Sbjct: 384 AAQSRDY-KNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVV 442
Query: 287 LWNAMISGYAKNGYAEEAVKLFP-------------KWMDY------------------Y 315
WN +ISGY +NG A EA++++ W+ +
Sbjct: 443 SWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGH 502
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE-- 373
+ K+ +V V T LID+Y KCG + A F + + V +A+ +G+HG GE
Sbjct: 503 LIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKA 562
Query: 374 ---------------------------------EGWVLFHHIRKHGIEPRHQHYARVVDL 400
EG FH ++++GI+P +HY +VDL
Sbjct: 563 LKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDL 622
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L RAG+ A+ FI +MP+ S+ ALL A +I
Sbjct: 623 LGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRI 657
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 154/393 (39%), Gaps = 104/393 (26%)
Query: 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------- 130
NEE ++ + D SC L K +H ++ G +++S+ IS+ V Y
Sbjct: 74 NEEIDFNSLFD-SCTKTLL--AKRLHALLVVSG-KIQSNF-ISIRLVNLYASLGDVSLSR 128
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM-------DYY------------ 164
+ +V N+MIS Y +NG+ EA+ F + + D+Y
Sbjct: 129 GTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL 188
Query: 165 ---------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
+ K ++ +V V LI MY++ G V +A FD +D+ +AMI G
Sbjct: 189 VDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGL 248
Query: 216 GLHEWSAFGSFDGL-------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
+ +A + D L ++ + + L L + ++H ++IK GLE E
Sbjct: 249 -IQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFE 307
Query: 269 ---SDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM- 312
S+ LI++ A + +V WN++I+ Y +N A F K
Sbjct: 308 LFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQL 367
Query: 313 --------------DYYIGKSEYRNN----------------VIVNTVLIDMYAKCGSVD 342
+Y+N+ V++ ++DMYAK G +D
Sbjct: 368 NGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVID 427
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
A F+ KDVV + + GY +GL E
Sbjct: 428 SAHKVFNLIPVKDVVSWNTLISGYTQNGLASEA 460
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 53/250 (21%)
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------- 281
NEE ++ + D SC L K +H ++ G +++S+ IS+ V Y
Sbjct: 74 NEEIDFNSLFD-SCTKTLL--AKRLHALLVVSG-KIQSNF-ISIRLVNLYASLGDVSLSR 128
Query: 282 -------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-------DYY------------ 315
+ +V WN+MIS Y +NG+ EA+ F + + D+Y
Sbjct: 129 GTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL 188
Query: 316 ---------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ K ++ +V V LI MY++ G V +A FD +D+ +AM G
Sbjct: 189 VDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGL 248
Query: 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA---FKFIMNMPIELRL 423
+G + + +R GI A ++ + A+ G + A +++ +E L
Sbjct: 249 IQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFEL 308
Query: 424 SVRRALLSAW 433
V AL++ +
Sbjct: 309 FVSNALINMY 318
>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 135/340 (39%), Gaps = 97/340 (28%)
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSF-DGLLSNEENEYGT 239
MYAKCG +D A FD ++VV +A+I GY H + F F D L+ NE+
Sbjct: 1 MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVDCYPNEFAF 60
Query: 240 A-LDCSCDLEFLEQGKIVHGFMIKLGL----------------ELESDLLISLTAVCRYQ 282
A + SCD GK VH +K+GL E + + + CR
Sbjct: 61 ASVIISCDYVC---GKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVF 117
Query: 283 P-----NVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYYIG----------- 317
N+ WN+MI+ EEA+ LF P W + I
Sbjct: 118 ESMEFRNLVSWNSMIAA------EEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTER 171
Query: 318 ----------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
K+ + ++ ++ LI YA+CGS+ + FD+ +DVV ++M Y
Sbjct: 172 HALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYA 231
Query: 368 LHGLGEEGWVLFHHIR---------------------------------KHGIEPRHQHY 394
LHG +E LF + HG+ P+ HY
Sbjct: 232 LHGQAKEALHLFSEMNVRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHY 291
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
A +VD+L RAG A + I MP++ V ALLS+ +
Sbjct: 292 ACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCR 331
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 129/334 (38%), Gaps = 83/334 (24%)
Query: 46 LFDGLFDRTIV----FLDLYHLWSRTEWSAFGSF-DGLLSNEENEYGTA-LDCSCDLEFL 99
+FD + R +V + Y R+ + F F D L+ NE+ A + SCD
Sbjct: 14 VFDEMGRRNVVSWTALISGYAQHGRS-YECFSLFSDMLVDCYPNEFAFASVIISCDYVC- 71
Query: 100 EQGKIVHGFMIKLGL----------------ELESDLLISLTAVCRYQPNVTLRNAMISG 143
GK VH +K+GL E + + + CR ++ RN ++S
Sbjct: 72 --GKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVFESMEFRN-LVSW 128
Query: 144 YAKNGYAEEAVKLF---------PKWMDYYIG---------------------KSEYRNN 173
+ EEA+ LF P W + I K+ + ++
Sbjct: 129 NSMIAAEEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTERHALAVYSQVVKAGFEDD 188
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLS 231
++ LI YA+CGS+ + FD+ +DVV ++MI Y LH + A F +
Sbjct: 189 RVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEMNV 248
Query: 232 NEENEYGTALDCSCD--------LEFLEQGKIVHGFMIKL-------------GLELESD 270
++ AL +C + + + HG +L GL LE+
Sbjct: 249 RPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHYACMVDILGRAGLLLEAG 308
Query: 271 LLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304
LIS + +P+ +W+A++S K G + A
Sbjct: 309 ELISRMPM---KPDSVVWSALLSSCRKYGETQLA 339
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 149/352 (42%), Gaps = 96/352 (27%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
V L+++Y + GS++ A F+ K+ V+ MI G+ L+ FG F+ L +
Sbjct: 150 VAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGH-LNFSEEFGVFE--LFSRMR 206
Query: 236 EYGTALDC--------SCDLEFL-EQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--- 283
G LD +C + ++GK HG IK ++S+ + + V Y
Sbjct: 207 RSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNF-IDSNFFLQTSLVDMYMKCGF 265
Query: 284 --------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------------- 316
+V +W+A+I+G+A+NG A E++ +F + + +
Sbjct: 266 LDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLA 325
Query: 317 ---------GKSEY----RNNVIVN----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
G+S + RN V ++ T IDMYAKCG + A F + +K+V
Sbjct: 326 CSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSW 385
Query: 360 SAMTVGYGLHGLG-----------------------------------EEGWVLFHHI-R 383
S M G+G+HGL EEGW F + R
Sbjct: 386 STMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSR 445
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI P +HYA +VDLL RAG + A FI NMP E S ALL A +I
Sbjct: 446 DYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRI 497
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 159/417 (38%), Gaps = 131/417 (31%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
C +PN T +ISG++ E K+ + I + + ++++V T LI+MY KC
Sbjct: 201 CDMKPNSTTYINVISGFSTPEVLPEGRKIHAE-----IVANGFDSDLVVATALINMYGKC 255
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGY----GLHEWSAFGSFDGL----LSNEENEYGT 239
GS A FD+ +D+V + MI Y HE A + L + + +
Sbjct: 256 GSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHE--ALELYQKLDMEGFKRTKATFVS 313
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC----------------- 279
L ++ L QG++VH +++ GL+ E + L+++ A C
Sbjct: 314 ILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD 373
Query: 280 ---------RYQPN--------------------VTLWNAMISGYAKNGYAEEAVKLFP- 309
Y N WNAMI+ Y +NG A A+K+F
Sbjct: 374 AVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFRE 433
Query: 310 ------------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
K + I +SE +NV+V LI+MYA+CG
Sbjct: 434 MTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCG 493
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------- 372
S++ A F +K VV +AM + +G
Sbjct: 494 SLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILF 553
Query: 373 --------EEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
E+GW F + + HG+ P H+A +VDLL R+G A + + +MP E
Sbjct: 554 VCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFE 610
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 125/324 (38%), Gaps = 81/324 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS------------------EYRN 172
Q NV NAMI+ YA+NG++ EA+ L+ + +G E N
Sbjct: 72 QRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHN 131
Query: 173 NVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EWSA 222
V + L+ MYA+ GSV A F +D +A+I+ + +WS
Sbjct: 132 RVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSG 191
Query: 223 ----FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F + Y + E L +G+ +H ++ G +SDL+++ +
Sbjct: 192 ALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG--FDSDLVVATALI 249
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK----------- 310
Y + ++ WN MI Y +NG EA++L+ K
Sbjct: 250 NMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKA 309
Query: 311 -------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+ +I + + V V T L++MYAKCGS++ A F+
Sbjct: 310 TFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAM 369
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEG 375
++D V S + Y +G G++
Sbjct: 370 KNRDAVAWSTLIGAYASNGYGKDA 393
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 59/275 (21%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHEWSAFG 224
S + + +V LI MY KC S+ A F+ ++D ++VV +AMI Y + S
Sbjct: 36 SRFERDTMVGNALISMYGKCDSLVDARSVFE-SMDWRQRNVVSWNAMIAAYAQNGHSTEA 94
Query: 225 -------SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL-T 276
+ GL ++ CS L QG+ +H + GL+ L +L T
Sbjct: 95 LVLYWRMNLQGLGTDHVTFVSVLGACSS----LAQGREIHNRVFYSGLDSFQSLANALVT 150
Query: 277 AVCRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------PKWMDY 314
R+ + T WNA+I ++++G A+++F P Y
Sbjct: 151 MYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTY 210
Query: 315 Y---------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
I + + ++++V T LI+MY KCGS A FD+
Sbjct: 211 INVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKK 270
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+D+V + M Y +G E L+ + G +
Sbjct: 271 RDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFK 305
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 157/403 (38%), Gaps = 91/403 (22%)
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
+L C+ + NA +A A ++ L + ++ K+ V T LI
Sbjct: 40 ALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLIS 99
Query: 183 MYAKCGSVDLAPMFFDRTLDKD--VVMRSAMIVGYGLHEWSAFGSF-------DGLLSNE 233
MY KC ++ A FD V +A+I GY L+ + +G+ N
Sbjct: 100 MYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNA 159
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY--------- 281
G C+ + L G +H ++ GL+ + + L+++ C
Sbjct: 160 VTMLGLIPVCAGPIH-LGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFD 218
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFPKW--------------------------- 311
+ + WNAMISGYA+NG A + L+ K
Sbjct: 219 GMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAA 278
Query: 312 ---MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
++ I S + N + LI+MYA+CG++ A FD +K+V+ +A+ GYG+
Sbjct: 279 GREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGM 338
Query: 369 HGLGEEGWVLFHHI------------------------------------RKHGIEPRHQ 392
HG GE LF + R +G++P +
Sbjct: 339 HGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPE 398
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HY+ VVDLL RAG A K I +M +E +V ALL A KI
Sbjct: 399 HYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKI 441
>gi|413936880|gb|AFW71431.1| hypothetical protein ZEAMMB73_960177 [Zea mays]
Length = 530
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 147/355 (41%), Gaps = 68/355 (19%)
Query: 138 NAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIG- 166
N MIS Y ++ EEAV +F P Y +
Sbjct: 121 NCMISAYGRSSQVEEAVGVFNAMRRAEVRPSGSTVVGLLSGCADSVSARYPGVSVYGLTI 180
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLHEW-SAFG 224
KS +++V+ ++ M + G +D A + FDR +K VV SAM Y +W F
Sbjct: 181 KSGLDADLLVSNSVLTMLVRGGQLDSARLLFDRVENKSVVTWSAMASAYLQTGDWMEVFA 240
Query: 225 SFDGLLSNEENEYGTALD--CSCDLEFLEQ--GKIVHGFMIKLGLELESDLLISLTAVCR 280
F + E+ L + + F K VH IK+G + + DL SL +
Sbjct: 241 LFSSMRETEQPMDSVVLANLITAAMLFGNNLVAKGVHALAIKVGFDRQEDLAASLVNLYS 300
Query: 281 YQPN---------------VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
N V +W +M++GY + GY +EA+ F +D I
Sbjct: 301 KCGNLLAAREVFDSLQWKSVIMWTSMLNGYVECGYPDEALATFDAMLDLAIW-------- 352
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDK----DVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ +I+ +A G A + F+ K D ++ + + G +EG FH
Sbjct: 353 ---SAMINGHACNGEGSEAVVLFNEMQSKGVRPDAIVFTHILTACSHSGSVDEGLRCFHS 409
Query: 382 IR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +HGIEP +HY ++DLL +AG+ + A KF MP+ LR V L+SA ++
Sbjct: 410 MTAEHGIEPSVEHYMCMIDLLCKAGHLSSAIKFFGEMPVRLRNQVLAPLISAHRV 464
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT--LDKDVVMRSAMTVGYGLHGLG 372
++ + + V T L+DMYAKCG + A FD T + +V + M YG
Sbjct: 74 FLSGAAVSRDAFVRTSLVDMYAKCGRLPDAHRLFDETPCSSRTLVAWNCMISAYGRSSQV 133
Query: 373 EEGWVLFHHIRKHGIEP 389
EE +F+ +R+ + P
Sbjct: 134 EEAVGVFNAMRRAEVRP 150
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 148/404 (36%), Gaps = 122/404 (30%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------- 171
PN + N +I YA + E A+ +F + + + +Y
Sbjct: 70 NPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQ 129
Query: 172 -----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+++ + LI +YA CG ++ A DR L++DVV +A++ Y
Sbjct: 130 IHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAER-- 187
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK----LGLELESDLLISLT 276
GL+ L C E E+ FMI +GL E+ + T
Sbjct: 188 -------GLME---------LACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGET 231
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------------------- 309
V NV WNAMI+GY+ G E + LF
Sbjct: 232 PV----KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGAL 287
Query: 310 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+W+ YI K+ + V T L+DMY+KCGS++ A F+ L KD+ +++ G
Sbjct: 288 SQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGL 347
Query: 367 GLHGLGEEGWVLFHH------------------------------------IRKHGIEPR 390
HG G+ +F + HGI+P
Sbjct: 348 STHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPT 407
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HY +VDLL R G A + + MP + V +LL A +
Sbjct: 408 IEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACR 451
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 133/357 (37%), Gaps = 75/357 (21%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLF-DRTIVFL---- 58
A V P+ T LK+C + + G ++HG + G L D LF T++ L
Sbjct: 102 ASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTG-----LGDDLFIQNTLIHLYASC 156
Query: 59 ----DLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK--- 111
D HL R S++ LLS L C E E+ FMI
Sbjct: 157 GCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYV 216
Query: 112 -LGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------ 158
+GL E+ + T V NV NAMI+GY+ G E + LF
Sbjct: 217 GVGLLEEARRVFGETPV----KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNC 272
Query: 159 ------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
+W+ YI K+ + V T L+DMY+KCGS++ A F+
Sbjct: 273 TLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSC 332
Query: 201 LDKDVVMRSAMIVGY-----GLHEWSAFGSF--DGLLSNEENEYGTALDCSCDLEFLEQG 253
L KD+ +++I G G H F +G NE + L L++G
Sbjct: 333 LRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVT-FVCVLSACSRAGLLDEG 391
Query: 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ + M+ V QP + + M+ + G EEA +L K
Sbjct: 392 REMFNLMVH---------------VHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQK 433
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 152/392 (38%), Gaps = 103/392 (26%)
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------------QPNVT 135
DC +E K +H ++K L S L+ + VC + PN
Sbjct: 23 DCPNIVEL----KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAF 78
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKW---------------------------MDYYIGKS 168
L NAMI Y N A+ ++ + M Y +GK
Sbjct: 79 LYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQ 138
Query: 169 EY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV-------------- 206
+ ++N +V L++MY KC S+D A F+ ++D V
Sbjct: 139 VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQ 198
Query: 207 MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGL 265
MR A + + + + F S+ ++S + C D LEF + ++V G+
Sbjct: 199 MRRARAIFEEMQDKTIF-SWTAIVSGY-----ARIGCYADALEFFRRMQMV-------GI 245
Query: 266 ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
E + L+S+ C A+ G E KW+ Y K+ + N+
Sbjct: 246 EPDEISLVSVLPDC----------------AQLGALE-----LGKWIHIYADKAGFLRNI 284
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
V LI+MYAKCGS+D FD+ ++DV+ S M VG HG E LF ++K
Sbjct: 285 CVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKA 344
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
IEP + ++ A AG N ++ +M
Sbjct: 345 KIEPSIITFVGLLTACAHAGLLNEGLRYFESM 376
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 138/358 (38%), Gaps = 90/358 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
+ P+ T P V+K+C L +G +VHG +F G T+V L ++
Sbjct: 113 IFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFG---------QKSNTVVENSLVEMYV 163
Query: 66 RTEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 123
+ + A F+ + + + T + L + + + + E++ + S
Sbjct: 164 KCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFE-------EMQDKTIFS 216
Query: 124 LTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------- 158
TA+ +SGYA+ G +A++ F
Sbjct: 217 WTAI-------------VSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLG 263
Query: 159 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
KW+ Y K+ + N+ V LI+MYAKCGS+D FD+ ++DV+ S MIV
Sbjct: 264 ALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIV 323
Query: 214 GYGLHEWS-----------------AFGSFDGLLS--------NEENEYGTALDCSCDLE 248
G H + + +F GLL+ NE Y ++ +
Sbjct: 324 GLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYN-- 381
Query: 249 FLEQGKIVHGFMIK-LGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAV 305
+E G +G ++ LGL D + L +P+ +W +++S +G + AV
Sbjct: 382 -IEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAV 438
>gi|449462669|ref|XP_004149063.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 63/338 (18%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
I KS + ++ T L+D Y K G V +A M FD L K+V+ ++MI GY
Sbjct: 165 ILKSNVSPDDVLYTALVDSYIKNGDVYIARMVFDLMLKKNVICSTSMISGYMNR------ 218
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLISLTAVCRYQP 283
GL+ + E + ++ + + ++ G+ +S + I + +C + P
Sbjct: 219 ---GLVKDAEEIFRKTVE----KDIVVFNAMIEGYSKTHEHAKKSLEFYIDMQRLC-FSP 270
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
N++ ++++I + E ++ + M K+++ ++ + + LIDMY+KCG D
Sbjct: 271 NISTFSSVIGACSVLAAFEAGQQIQCQLM-----KTKFFTDIRMGSALIDMYSKCGRTDD 325
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHG--------------------------------- 370
A FD+ +++V ++M GYG +G
Sbjct: 326 ARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQEKHQIQPNFVTFLSALSACA 385
Query: 371 ---LGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
L EEGW +F + R + ++P+ +HYA +VDLL RAG A++F M MP V
Sbjct: 386 HGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLLGRAGSLLQAWEFAMQMPETPNSDVW 445
Query: 427 RALLSAWKIPMQQWENMLQTIRGIDEGEK--TDKRPGV 462
ALLS+ K+ N+ DE K D RPG
Sbjct: 446 AALLSSAKL----HGNVEIACMAADELFKLNADSRPGA 479
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 140/364 (38%), Gaps = 93/364 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MISGYA+ G +A +LF +S R+ V T ++ Y + G VD A +F
Sbjct: 236 NTMISGYAQVGDLSQAKRLF--------NESPIRD-VFTWTAMVSGYVQNGMVDEARKYF 286
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D K+ + +AM+ GY ++ E A+ C ++
Sbjct: 287 DEMPVKNEISYNAMLAGYVQYKKMVIAG----------ELFEAMPCR---NISSWNTMIT 333
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
G+ G+ L + Q + W A+ISGYA+NG+ EEA+ +F
Sbjct: 334 GYGQNGGIAQARKLFDMMP-----QRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGES 388
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
K + + K+ + V L+ MY KCGS D A
Sbjct: 389 SNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDV 448
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------- 391
F+ +KDVV + M GY HG G + VLF ++K G++P
Sbjct: 449 FEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLI 508
Query: 392 --------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HY ++DLL RAG A + NMP + + ALL
Sbjct: 509 DRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLG 568
Query: 432 AWKI 435
A +I
Sbjct: 569 ASRI 572
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 107/270 (39%), Gaps = 31/270 (11%)
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
S ++V P++ N IS + +NG+ + A+++F S R + + +I
Sbjct: 35 SPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVF---------NSMPRRSSVSYNAMIS 85
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTA 240
Y + LA FD+ ++D+ + M+ GY + A FD + + +
Sbjct: 86 GYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAM 145
Query: 241 LDCSCDLEFLEQGKIVHGFMIK---------LGLELESDLLISLTAVCRYQPNVTL--WN 289
L F+++ + V M L + + L + Q N L WN
Sbjct: 146 LSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWN 205
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
++ GY K +A +LF + +VI +I YA+ G + A F+
Sbjct: 206 CLMGGYVKRNMLGDARQLFDRMP---------VRDVISWNTMISGYAQVGDLSQAKRLFN 256
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+ +DV +AM GY +G+ +E F
Sbjct: 257 ESPIRDVFTWTAMVSGYVQNGMVDEARKYF 286
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 41/247 (16%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
NAMISGY +N A LF K + ++ V++ Y + + A F
Sbjct: 81 NAMISGYLRNAKFSLARDLFDKMPE---------RDLFSWNVMLTGYVRNRRLGEAHKLF 131
Query: 198 DRTLDKDVVMRSAMIVGYGLHEW-----SAFG--------SFDGLLS-----NEENEYGT 239
D KDVV +AM+ GY + + F S++GLL+ E
Sbjct: 132 DLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARR 191
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299
+ + E + ++ G+ +K + ++ L V +V WN MISGYA+ G
Sbjct: 192 LFESQSNWELISWNCLMGGY-VKRNMLGDARQLFDRMPV----RDVISWNTMISGYAQVG 246
Query: 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+A +LF +S R +V T ++ Y + G VD A +FD K+ +
Sbjct: 247 DLSQAKRLF--------NESPIR-DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISY 297
Query: 360 SAMTVGY 366
+AM GY
Sbjct: 298 NAMLAGY 304
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY-- 130
DG SN + AL D+ LE GK VHG ++K G E + L+ + C
Sbjct: 385 DGESSNRST-FSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTD 443
Query: 131 ----------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
+ +V N MI+GYA++G+ +A+ LF + K+ + + I +
Sbjct: 444 EANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFES-----MKKAGVKPDEITMVGV 498
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKD 204
+ + G +D +F ++D+D
Sbjct: 499 LSACSHSGLIDRGTEYF-YSMDRD 521
>gi|125605681|gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japonica Group]
Length = 701
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 158/355 (44%), Gaps = 86/355 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
K + + ++V + L MY++C +V + F+ ++D V +AM+ G+ H S AF
Sbjct: 288 KEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFL 347
Query: 225 SFDGLLSN---EENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELE--SDLLISLTAV 278
+F ++ + ++ TA+ +C+ E L +GK VHG +++ E +D IS+ +
Sbjct: 348 TFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRVYGETTFINDCFISMYSK 407
Query: 279 CR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------- 309
C+ + + +W++MISGYA NG EEA+ LF
Sbjct: 408 CQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSI 467
Query: 310 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
K + Y K+ ++ V++ L+ +Y++ G++D + FD D+
Sbjct: 468 LSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDL 527
Query: 357 VMRSAMTVGYGLH-----------------------------------GLGEEGWVLFHH 381
V + + GY H GL E+G+ F+
Sbjct: 528 VAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFNYFNS 587
Query: 382 IRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+R +G+EP QHY +VDLL R+G A F+ +MP++ L V LL+A ++
Sbjct: 588 MRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLLAACRV 642
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 143/366 (39%), Gaps = 101/366 (27%)
Query: 88 TALDCSCDL-EFLEQGKIVHGFMIKLGLELE--SDLLISLTAVC------RYQPNVTLR- 137
TA+ +C+ E L +GK VHG +++ E +D IS+ + C R + T R
Sbjct: 365 TAILSACNRPECLLKGKEVHGHTLRVYGETTFINDCFISMYSKCQGVQTARRIFDATPRK 424
Query: 138 -----NAMISGYAKNGYAEEAVKLFP------------------------------KWMD 162
++MISGYA NG EEA+ LF K +
Sbjct: 425 DQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLH 484
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS- 221
Y K+ ++ V++ L+ +Y++ G++D + FD D+V + +I GY H S
Sbjct: 485 GYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQ 544
Query: 222 -AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
A FD M++LG+ ++ +L+S+ + C
Sbjct: 545 NALAMFD-------------------------------LMVQLGVRPDTVVLVSVLSAC- 572
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
++NG E+ F Y + E ++ ++D+ + G
Sbjct: 573 ---------------SRNGLVEQGFNYFNSMRTAYGVEPELQHYC----CMVDLLGRSGR 613
Query: 341 VDLAPMFFDR-TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
+ A F D + D+++ S + +H G + + IR+ + +A + +
Sbjct: 614 LAEAKYFVDSMPMKPDLMVWSTLLAACRVHDDTVLGRFVENKIREGNYDS--GSFATLSN 671
Query: 400 LLARAG 405
+LA +G
Sbjct: 672 ILANSG 677
>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 117/470 (24%), Positives = 183/470 (38%), Gaps = 127/470 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
V PNG T +L+AC +LL PR VHGQI GF +F + +D+Y
Sbjct: 107 VPPNGFTFTFLLRAC----ALLGLPRPCGCVHGQIVRCGF-----GSDVFVQN-ALMDVY 156
Query: 62 H------LWSRTEWSAFGSFDGLLSNEENEYGTAL-------DCSCDLEFLE---QGKIV 105
H +A FD ++ + + + + D + + F E + +V
Sbjct: 157 HRCGGGGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVV 216
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163
+ G D+ ++ AV P N N MISGYA +G E A +F + MD
Sbjct: 217 SWNTVVAGFARMGDM-VTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR-MD- 273
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+ +V+ T ++ YAK G +D A FD K++V +AMI GY
Sbjct: 274 -------QKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGY-------- 318
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
N + Y AL + L LE R++P
Sbjct: 319 --------NHNSRYDEALR-TFQLMMLEG---------------------------RFRP 342
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+ +++S A+ G E + W+ +IGKS V + LIDM+AKCG V
Sbjct: 343 DEATLVSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGR 397
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------------- 372
A F + + ++ + M G+ +GL
Sbjct: 398 AQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAH 457
Query: 373 ----EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
+EGW +F+ + ++ I+PR +HY +VDLL RA + K I +
Sbjct: 458 GGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL 507
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 114/279 (40%), Gaps = 42/279 (15%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDL-------APMFFDRTLDKDVVMRSAMIVGYGL 217
I + + ++V V L+D+Y +CG A FD +D+DVV ++ IVG +
Sbjct: 137 IVRCGFGSDVFVQNALMDVYHRCGGGGGGGGGVGAARQVFDEMVDRDVVSWNS-IVGVYM 195
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A G+ E + + +V + G D+ ++ A
Sbjct: 196 SSGDATGAMGFF------------------EAMPERNVVSWNTVVAGFARMGDM-VTARA 236
Query: 278 VCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335
V P N WN MISGYA +G E A +F + MD + +V+ T ++ Y
Sbjct: 237 VFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR-MD--------QKDVVSWTAMVSAY 287
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHY 394
AK G +D A FD K++V +AM GY + +E F + G P
Sbjct: 288 AKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATL 347
Query: 395 ARVVDLLARAG---YSNHAFKFIMNMPIELRLSVRRALL 430
VV A+ G Y N FI I L +++ AL+
Sbjct: 348 VSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALI 386
>gi|354805138|gb|AER41559.1| pentatricopeptide [Oryza australiensis]
Length = 510
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 127/274 (46%), Gaps = 36/274 (13%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V+V T L+DMYAKCG V A FD + ++ + +A+IV YG H A F ++
Sbjct: 150 DVVVATALLDMYAKCGQVAEASSVFDAMVLRNTISWNAIIVCYGKHGRGKEALEVFVSMM 209
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ +E + L D+ + +H + +K GL Q +
Sbjct: 210 RDGCCPDELTLASLLSSCADMAVANEATQLHSYTVKRGL----------------QDFLQ 253
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ NA+I Y KNG+ +EA + F + +++ + +I +A G A
Sbjct: 254 VSNALIMAYGKNGFVQEATRTFGMI---------HNPDLVTWSSMISCFAYLGLAKSAIN 304
Query: 347 FFDRTLDKDVVMRSAMTVGY---GLH-GLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLL 401
FDR L + + +G H GL E+G+ F + R + I+P QH A +VDLL
Sbjct: 305 LFDRMLQQGIQADGTAFLGVLSACCHAGLVEDGFKYFLLMKRDYKIDPTPQHLACLVDLL 364
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG A++F++NM + + V A LSA ++
Sbjct: 365 GRAGRIRDAYEFLVNMSCDANVDVIGAFLSACRM 398
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS R++ V T L D YAK G V A FD T +D V+ + M Y GL E W
Sbjct: 35 KSGSRSDARVATALADAYAKSGLVHHARRVFDETPLRDQVLWNVMVSCYSSQGLVRECWD 94
Query: 378 LFHHIRKHG 386
+F +R+ G
Sbjct: 95 VFGSMRRSG 103
>gi|242061516|ref|XP_002452047.1| hypothetical protein SORBIDRAFT_04g017510 [Sorghum bicolor]
gi|241931878|gb|EES05023.1| hypothetical protein SORBIDRAFT_04g017510 [Sorghum bicolor]
Length = 530
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 152/355 (42%), Gaps = 68/355 (19%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWM--------DYYIG----------------------- 166
N MIS Y ++ EEAV++F +G
Sbjct: 121 NCMISAYGRSSQVEEAVEVFNAMRRADVRPSGSTLVGLLSGCADSVSAMNLGVCVYGHTI 180
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLHEW-SAFG 224
KS +++V+ ++ M + G +D A + FDR +K VV SAM Y +W F
Sbjct: 181 KSGLDADLLVSNSVLTMLVRGGQLDSARLLFDRVENKSVVTWSAMASAYLQTGDWMKVFE 240
Query: 225 SFDGLLSNEENEYGTALD--CSCDLEF--LEQGKIVHGFMIKLGLELESDL---LISLTA 277
F + E+ L + + F L K VH +IK G + + DL L++L +
Sbjct: 241 LFSSMRETEQPMDSVVLANLITAAMLFGNLFVAKGVHALVIKAGFDCQEDLAASLVNLYS 300
Query: 278 VCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
C + NV +W +M++GY + G +EA+ F +D I
Sbjct: 301 KCGNLLAAREVFDSLHWKNVIMWTSMLNGYVECGCPDEALATFDAMLDLAIW-------- 352
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDK----DVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ +I+ YA G A + F+ K D ++ + + G EEG FH
Sbjct: 353 ---SAMINGYACNGEGSEAVVLFNEMQSKGVRPDAIVFTHILTACNHSGSVEEGLHCFHS 409
Query: 382 IR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ ++GI+P +HY ++DLL +AG+ + A KF MP++LR V L+SA ++
Sbjct: 410 MTAEYGIKPSIEHYMCMIDLLCKAGHLSSAIKFFSEMPVQLRNQVLAPLISAHRV 464
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT--LDKDVVMRSAMTVGYGLHGLG 372
++ + + V T L+DMYAKCGS+ A FD T + +V + M YG
Sbjct: 74 FLAGAAVSRDAFVRTSLVDMYAKCGSLPDAQRLFDETPCSSRTLVAWNCMISAYGRSSQV 133
Query: 373 EEGWVLFHHIRKHGIEP 389
EE +F+ +R+ + P
Sbjct: 134 EEAVEVFNAMRRADVRP 150
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 142/358 (39%), Gaps = 99/358 (27%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
++V V DMY+K G + A FD ++++ +A + L G +D L+
Sbjct: 141 SDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLE-----GRYDDALT 195
Query: 232 N---------EEN--EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
E N + L+ +L G+ +HGF+++ G E + ++ LI
Sbjct: 196 AFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYG 255
Query: 278 VCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW-------MDYYI-- 316
C +PN W +MI Y +N E+A +F + D+ +
Sbjct: 256 KCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSS 315
Query: 317 -------------GKSEYR--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
GKS + N+ V + L+DMY KCGS++ A FD +++
Sbjct: 316 VLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERN 375
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------------------- 383
+V +AM GY G + LF +
Sbjct: 376 LVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEI 435
Query: 384 ------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++GIEP +HYA VVDLL RAG A++FI MPI +SV ALL A K+
Sbjct: 436 FESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKM 493
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 123/470 (26%), Positives = 204/470 (43%), Gaps = 63/470 (13%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-----LFDRTIVFLDL 60
V P T ++ AL +G VH Q+ LGF Y F G ++ + + D
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGA-YAFVGSPLVDMYAKMGLIRDA 200
Query: 61 YHLWSRTEWSAFGSFD----GLLSNEENEYGTAL-DCSCDLEFLEQGKIVHGFMIKLGLE 115
++ E ++ GLL + E L D + + +V G + + GL+
Sbjct: 201 RRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTG-LTQNGLQ 259
Query: 116 LES-DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174
LE+ D+ + A T ++++ +EE K + YI ++ Y +NV
Sbjct: 260 LEALDVFRRMRAEGVGIDQYTF-GSILTACGALAASEEG-----KQIHAYITRTWYEDNV 313
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-----AFG--SFD 227
V + L+DMY+KC S+ LA F R ++++ +AMIVGYG + S AF D
Sbjct: 314 FVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMD 373
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
G+ ++ G+ + +L LE+G H + GL RY +T+
Sbjct: 374 GI-KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL-------------MRY---ITV 416
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG----SVDL 343
NA+++ Y K G E+A +LF + M ++ + + T L+ YA+ G ++DL
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDE-MSFH--------DQVSWTALVTGYAQFGKAKETIDL 467
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLA 402
L D V + GL E+G F ++K H I P HY ++DL +
Sbjct: 468 FEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYS 527
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI----PMQQW--ENMLQT 446
R+G A +FI MP LLS+ ++ + +W EN+L+T
Sbjct: 528 RSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLET 577
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 122/555 (21%), Positives = 205/555 (36%), Gaps = 152/555 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M V + P+ T P +L AC + +L G +VHG + + GL V L
Sbjct: 121 MLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKM---------GLEGDIFVSNSL 171
Query: 61 YHLWSRTEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
H ++ G FDG+L + + ++ + ++ + M + G+E
Sbjct: 172 IHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNP 231
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
++ + + C ++ L + S YI + + I+
Sbjct: 232 VTMVCVISACAKLKDLELGKKVCS---------------------YISELGMELSTIMVN 270
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--FGSFDGLLS----- 231
L+DMY KCG + A FD +K++VM + ++ Y HEW++ D +L
Sbjct: 271 ALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRP 330
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISL-------TAVCR- 280
++ T C+ L L GK H ++++ GLE S+ +I + A C+
Sbjct: 331 DKVTMLSTIAACA-QLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKV 389
Query: 281 --YQPNVTL--WNAMISGYAKNG-------------------------------YAEEAV 305
+ PN T+ WN++I+G ++G EEA+
Sbjct: 390 FEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAI 449
Query: 306 KLF------------------------------PKWMDYYIGKSEYRNNVIVNTVLIDMY 335
+LF KW+ YI K++ ++ + T L+DM+
Sbjct: 450 ELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMF 509
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------- 382
++CG A F R +DV +A + G E LF+ +
Sbjct: 510 SRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFV 569
Query: 383 -----------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
+ HGI P HY +VDLL RAG A I +MPI
Sbjct: 570 ALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPI 629
Query: 420 ELRLSVRRALLSAWK 434
E V +LL+A +
Sbjct: 630 EPNDVVWGSLLAACR 644
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 126/521 (24%), Positives = 207/521 (39%), Gaps = 113/521 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-LFDRTI---- 55
MQ++ + P+ T +L AC ++ L G ++H + G Y+ +G L D +
Sbjct: 236 MQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGD 295
Query: 56 --VFLDLYHLWSRTE---WS----AFGSFDGLLSNEE------------NEYGTAL---D 91
D+++L RT W+ A+G L + E N++
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRT 355
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNV 134
C+C + +E G+ +H IK G E SD+ +S + Y + +V
Sbjct: 356 CTCTGQ-IELGEQIHSLSIKNGFE--SDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDV 412
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPK------WMD------------------------YY 164
+MI+GY ++ + EEA+ F + W D
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
+ S Y ++ + L+++YA+CG + A F KD + + +I G+G A
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQA 532
Query: 223 FGSFD--GLLSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F G + N + +A+ +L ++QGK VHG +K G E+++
Sbjct: 533 LMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVA------ 586
Query: 279 CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK- 337
NA+IS Y K G E+A +F + RN V NT++
Sbjct: 587 ----------NALISLYGKCGSIEDAKMIFSEM--------SLRNEVSWNTIITSCSQHG 628
Query: 338 --CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHY 394
++DL L + V + GL EEG F + +G+ P HY
Sbjct: 629 RGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHY 688
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A VVD+L RAG + A +F+ MPI + R LLSA K+
Sbjct: 689 ACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKV 729
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 136/362 (37%), Gaps = 86/362 (23%)
Query: 139 AMISGYAKNGYAEEAVKLFPK--W----------------------------MDYYIGKS 168
AM+SGYA++G +EA +L+ + W + + K
Sbjct: 114 AMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQ 173
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSF 226
+ + V LI +Y GS LA F L D V + +I G+ H A F
Sbjct: 174 AFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIF 233
Query: 227 DGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC 279
D + L + + L + L++GK +H +++K G+ + L+ L C
Sbjct: 234 DEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKC 293
Query: 280 ------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY---- 314
+ NV LWN M+ Y + ++ ++F P Y
Sbjct: 294 GDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCIL 353
Query: 315 ---------YIG--------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+G K+ + +++ V+ VLIDMY+K G +D A + +DVV
Sbjct: 354 RTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVV 413
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFK 412
++M GY H EE F ++ G+ P + A A R G HA
Sbjct: 414 SWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV 473
Query: 413 FI 414
++
Sbjct: 474 YV 475
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
++ +LID+YAK G V A F +D V AM GY GLG+E + L+ +
Sbjct: 79 LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWT 138
Query: 386 GIEP 389
+ P
Sbjct: 139 AVIP 142
>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 118/452 (26%), Positives = 189/452 (41%), Gaps = 95/452 (21%)
Query: 29 GPRVHGQIFSLGF----------LVCYL-----------FDGLFDRTIVF---------- 57
G ++H I GF L+ Y+ FD L DRT+
Sbjct: 56 GQKIHSHILKTGFVPNTNISIKLLILYIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLK 115
Query: 58 -------LDLYHLWSRTEWSAFG-SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 109
LDL+H S + G +F +L N + DL G++VH +
Sbjct: 116 NGQVDESLDLFHQLSVSGEKPDGFTFSMILKASTNRVSNGM--VGDL-----GRMVHAQI 168
Query: 110 IKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 169
+K +E + D+L + A+I Y KNG +F +
Sbjct: 169 LKFDVE-KDDVLCT---------------ALIDSYVKNGRVGYGRTVFDVMSE------- 205
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
NVI +T LI Y G D A F +TLDKDVV+ +AMI GY A S +
Sbjct: 206 --KNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSKVSEYAMRSLEVY 263
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+ + + L + + ++ F ++G ++++ L+ + + + L +
Sbjct: 264 IDMQRLNFRPNLSTFASI--IGACSVLAAF--EIGEQVQAQLMKT-----PFFAVIKLGS 314
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
A+I Y+K G +A ++F D+ + K NV T +ID Y K G D A F
Sbjct: 315 ALIDMYSKCGRVIDAQRVF----DHMLEK-----NVFSWTSMIDGYGKNGFPDEALELFK 365
Query: 350 R-----TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLAR 403
+ ++ + V + GL E GW +F + ++ ++PR +HYA +VDLL R
Sbjct: 366 KMQIEYSITPNFVTFLSALTACAHAGLVERGWEIFQSMESEYKLKPRMEHYACMVDLLGR 425
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
AG+ N A++F+ MP V ALLS+ +I
Sbjct: 426 AGWLNQAWEFVTRMPERPNSDVWLALLSSCRI 457
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 144/353 (40%), Gaps = 88/353 (24%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFD 227
+RN + N +L MY + G+++ A FD + S ++ GY + +S F F
Sbjct: 82 FRNLAVANKLLY-MYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFR 140
Query: 228 GLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR 280
LL + ++ + DL+ L+ G+++H +K GL+ L+ + A C+
Sbjct: 141 ELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCK 200
Query: 281 ------------YQPNVTLWNAMISGYAKNGYAEEAVKLF-------------------- 308
++ ++ W MI A++G E++ F
Sbjct: 201 VVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVY 260
Query: 309 ----------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K + YI + Y +VI+ T +IDMYAKCGSV+ A FDR ++V+
Sbjct: 261 ACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVIT 320
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--------------------------- 391
SAM YG HG GE+ LF + + GI P
Sbjct: 321 WSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMW 380
Query: 392 ---------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VDLL RAG + A + I MP+E + ALL A +I
Sbjct: 381 DEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRI 433
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 45/169 (26%)
Query: 95 DLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR------------YQPNVTLRNA 139
DL+ L+ G+++H +K GL+ L+ + A C+ ++ ++
Sbjct: 163 DLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTV 222
Query: 140 MISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSE 169
MI A++G E++ F K + YI +
Sbjct: 223 MIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTG 282
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
Y +VI+ T +IDMYAKCGSV+ A FDR ++V+ SAMI YG H
Sbjct: 283 YSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYH 331
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 129/516 (25%), Positives = 203/516 (39%), Gaps = 118/516 (22%)
Query: 8 PNGCTPPLVLKACVALPSL-LMGPRVHGQIFSLGF------LVCYL-------------- 46
PN T +AC A L G V G +F LGF + C L
Sbjct: 150 PNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMR 209
Query: 47 --FDGLFDRTIVFLDLYHLWSRTEWSAFGS-----FDGLLSN--EENEY--GTALDCSCD 95
FDGLF+RT+V L L +R S + F +L N + ++Y + L +
Sbjct: 210 RVFDGLFERTVVVWTL--LITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTE 267
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------------QPNVT 135
L G+ +H ++LGLE SD +S V Y + NV
Sbjct: 268 LGSFRLGQQLHSLALRLGLE--SDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVM 325
Query: 136 LRNAMISGYAKNGYAEEAVKLF----------PKWMDY---------------------Y 164
A++SGY + G + V + P + Y +
Sbjct: 326 AWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTH 385
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
KS + +V L+ MYA+ GS++ A FD+ +K++V S + G G
Sbjct: 386 CVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDY 445
Query: 225 SFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
+ + L +G+ + + + L +G+ +H +K G +
Sbjct: 446 QIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAG----------------FGS 489
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+ + N+++S Y++ GY +A ++F + D+ NVI T +I AK G
Sbjct: 490 DRAIGNSLVSMYSRCGYLVDACQVFDEMNDH---------NVISWTSMISGLAKHGYAAR 540
Query: 344 APMFFDRTLDKDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVV 398
A F + V V A+ GL +EG F ++KH G+ PR +HYA +V
Sbjct: 541 ALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMV 600
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
DLL R+G A FI MP ++ V + LL A K
Sbjct: 601 DLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACK 636
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 115/294 (39%), Gaps = 61/294 (20%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIV-----GYGLHEWSAFG 224
+ +V L+ +Y+KC +V A FD +D+V +AM G FG
Sbjct: 82 TDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFG 141
Query: 225 SF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI--------- 273
+GLL N C F G V G + KLG +D+ +
Sbjct: 142 ETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGF-WGTDVSVGCALIDMFA 200
Query: 274 ---SLTAVCR-----YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY---- 321
L A+ R ++ V +W +I+ YA++GY++EAV+LF ++ +Y
Sbjct: 201 KNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSS 260
Query: 322 --------------------------RNNVIVNTVLIDMYAKC---GSVDLAPMFFDRTL 352
++ V+ L+DMYAK S+ A F+R
Sbjct: 261 MLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMP 320
Query: 353 DKDVVMRSAMTVGYGLHGLGE-EGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+V+ +A+ GY G + + +LF + GI P H Y+ ++ A G
Sbjct: 321 KHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLG 374
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 66/218 (30%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
+V WN MISGYA+NG+ EA+ LF KW+
Sbjct: 234 SVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIH 293
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
Y GK++ + ++ + L+DMY+KCGS+D A F+ ++ + SA+ + +HG E
Sbjct: 294 LYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAE 353
Query: 374 EGWVLFHHIRKHGI------------------------------------EPRHQHYARV 397
+ + FH + K G+ +PR +HY +
Sbjct: 354 DAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCM 413
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VDLL RAG+ A + I NMPIE + +ALL A K+
Sbjct: 414 VDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKM 451
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 134/346 (38%), Gaps = 76/346 (21%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLY 61
V PN T P VLKAC L G ++HG I GF V ++ V D Y
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ-GKIVHGFMIKLGLELESDL 120
L+ + FDG C +L+ +Q G +V ++ G D+
Sbjct: 178 SLFCKN----VVDFDG-------------SCQMELDKRKQDGNVVLWNIMIDGQVRLGDI 220
Query: 121 LISLTAVCRYQPNVTLR-NAMISGYAKNGYAEEAVKLFP--------------------- 158
+ P + N MISGYA+NG+ EA+ LF
Sbjct: 221 KSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAI 280
Query: 159 ---------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 209
KW+ Y GK++ + ++ + L+DMY+KCGS+D A F+ ++ + S
Sbjct: 281 ARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWS 340
Query: 210 AMIVGYGLHEWS--AFGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262
A+I + +H + A F G+ N+ G CS +E+G+ M+K
Sbjct: 341 AIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACS-HAGLVEEGRSFFSHMVK 399
Query: 263 LGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
V QP + + M+ + G+ EEA +L
Sbjct: 400 ---------------VVGLQPRIEHYGCMVDLLGRAGHLEEAEELI 430
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 131/364 (35%), Gaps = 123/364 (33%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MI+GYA+ G E+A +LF M+ +N V N +I Y +CG ++ A FF
Sbjct: 159 NTMITGYARRGEMEKARELFYSMME--------KNEVSWNA-MISGYIECGDLEKASHFF 209
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
+ VV +AMI G
Sbjct: 210 KVAPVRGVVAWTAMITG------------------------------------------- 226
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---- 313
+M +EL + +T N+ WNAMISGY +N E+ +KLF ++
Sbjct: 227 -YMKAKKVELAEAMFKDMTV----NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIR 281
Query: 314 --------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ KS N+V T LI MY KCG + A
Sbjct: 282 PNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKL 341
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-------------------------- 381
F+ KDVV +AM GY HG ++ LF
Sbjct: 342 FEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLV 401
Query: 382 ----------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+R + +EP+ HY +VDLL RAG A K I +MP +V LL
Sbjct: 402 NIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLG 461
Query: 432 AWKI 435
A ++
Sbjct: 462 ACRV 465
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 34/246 (13%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE---W 220
Y+ K ++ + +I + G +D A F K+ + +++++G
Sbjct: 51 YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM 110
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK----------------IVHGFMIKLG 264
A FD + + Y L C E+ + ++ G+ +
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324
+E +L S+ + N WNAMISGY + G E+A F K
Sbjct: 171 MEKARELFYSMM-----EKNEVSWNAMISGYIECGDLEKASHFF---------KVAPVRG 216
Query: 325 VIVNTVLIDMYAKCGSVDLA-PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
V+ T +I Y K V+LA MF D T++K++V +AM GY + E+G LF +
Sbjct: 217 VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAML 276
Query: 384 KHGIEP 389
+ GI P
Sbjct: 277 EEGIRP 282
>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
Length = 563
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 146/366 (39%), Gaps = 93/366 (25%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV NAM++G + G E+A LF + + NV+ T ++D A+CG V
Sbjct: 109 NVASWNAMLAGLVRLGSMEDARSLFDQMPE---------RNVVSYTTMVDGLARCGEVAS 159
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
A FD +++V +AMI GY D + E + A+ + +
Sbjct: 160 ARELFDAMPTRNLVSWAAMISGY----------VDNNMLEEARKLFEAMP---EKNVVAC 206
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
++ G+ + L+ L + A +V WNA+ISGY NG EEA KL+ +
Sbjct: 207 TAMITGYCKEGDLQNARRLFDGIRA-----KDVISWNAIISGYVHNGLGEEATKLYIIML 261
Query: 313 DYYI----------------------GKSEY--------RNNVIVNTVLIDMYAKCGSVD 342
I G+S + +++ + L+ MY+KCG+VD
Sbjct: 262 REGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVD 321
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR------------------- 383
+ + F +D+V + + Y HG ++ LFH +
Sbjct: 322 ESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACG 381
Query: 384 -----------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
K+ I PR +HYA +VD+L+RAG A +I MP E +V
Sbjct: 382 HAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKNVW 441
Query: 427 RALLSA 432
LL A
Sbjct: 442 GTLLCA 447
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 145/358 (40%), Gaps = 89/358 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
K+ Y V + T LI Y KC S+ A FD +++VV +AMI Y ++ A
Sbjct: 86 KTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALS 145
Query: 225 SFDGLLSN--EENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-- 278
F +L + E NE+ T L G+ +H +IKL E + SL +
Sbjct: 146 LFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYA 205
Query: 279 -------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
C + +V A+ISGYA+ G EEA++LF
Sbjct: 206 KDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTS 265
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + ++ +SE + V++ LIDMY+KCG++ A FD ++
Sbjct: 266 VLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERT 325
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------KHG---------- 386
V+ +AM VGY HG G E LF+ + HG
Sbjct: 326 VISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIF 385
Query: 387 ---------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++P +HY VVD+L RAG AF+F+ MP E ++ LL A +
Sbjct: 386 YDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSV 443
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 141/368 (38%), Gaps = 104/368 (28%)
Query: 103 KIVHGFMIKLGLELESDLLISLTAVCRY---------------QPNVTLRNAMISGYAKN 147
K +H ++K L S L+ + VC + PN L NAMI Y N
Sbjct: 76 KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 135
Query: 148 GYAEEAVKLFPKW---------------------------MDYYIGKSEY--------RN 172
A+ ++ + M Y +GK + ++
Sbjct: 136 KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 195
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS--AMIVGYGLHEWSAFGSFDGLL 230
N +V L++MY KC S+D A F+ ++D + S A++ GY
Sbjct: 196 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYA-------------- 241
Query: 231 SNEENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+ C D LEF + ++V G+E + L+S+ C
Sbjct: 242 ---------RIGCYADALEFFRRMQMV-------GIEPDEISLVSVLPDC---------- 275
Query: 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
A+ G E KW+ Y K+ + N+ V LI+MYAKCGS+D FD
Sbjct: 276 ------AQLGALE-----LGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFD 324
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409
+ ++DV+ S M VG HG E LF ++K IEP + ++ A AG N
Sbjct: 325 QMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNE 384
Query: 410 AFKFIMNM 417
++ +M
Sbjct: 385 GLRYFESM 392
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 137/343 (39%), Gaps = 89/343 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVCYLFDGLF 51
+ P+ T P V+K+C L +G +VHG +F G ++ C D L
Sbjct: 158 IFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKC---DSLD 214
Query: 52 DRTIVFLDLYHLWSRT-EWSAFGSFDGLLSNEENEYGTA-LDCSCD-LEFLEQGKIVHGF 108
D VF ++ + W+A S G A + C D LEF + ++V
Sbjct: 215 DAHRVFEEMTERDATIFSWTAIVS------------GYARIGCYADALEFFRRMQMV--- 259
Query: 109 MIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 168
G+E + L+S+ C A+ G E KW+ Y K+
Sbjct: 260 ----GIEPDEISLVSVLPDC----------------AQLGALE-----LGKWIHIYADKA 294
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS------- 221
+ N+ V LI+MYAKCGS+D FD+ ++DV+ S MIVG H +
Sbjct: 295 GFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELF 354
Query: 222 ----------AFGSFDGLLS--------NEENEYGTALDCSCDLEFLEQGKIVHGFMIK- 262
+ +F GLL+ NE Y ++ + +E G +G ++
Sbjct: 355 QEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYN---IEPGVEHYGCLVNL 411
Query: 263 LGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAV 305
LGL D + L +P+ +W +++S +G + AV
Sbjct: 412 LGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAV 454
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 150/382 (39%), Gaps = 100/382 (26%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFG 224
K+ Y + T L+ Y KC ++ A D +K+VV +AMI Y H A
Sbjct: 80 KTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALT 139
Query: 225 SFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLT 276
F ++ ++ E + T L L GK +HG ++K + + S LL
Sbjct: 140 VFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYA 199
Query: 277 AV-----------CRYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-- 314
C + +V A+I+GYA+ G EEA+++F P ++ Y
Sbjct: 200 KAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYAS 259
Query: 315 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
++ + E ++ LIDMY+KCG++ A FD ++
Sbjct: 260 LLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERT 319
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------------------- 383
+ +AM VGY HGLG E LF +R
Sbjct: 320 AISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIF 379
Query: 384 ------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM 437
++G +P +HY +VD+L RAG + AF+FI MP + V +LL A ++ +
Sbjct: 380 DGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHL 439
Query: 438 QQWENMLQTIRGIDEGEKTDKR 459
+D GE +R
Sbjct: 440 S-----------VDIGESVGRR 450
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 30/121 (24%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDY--------------- 163
C + +V A+I+GYA+ G EEA+++F P ++ Y
Sbjct: 213 CLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDH 272
Query: 164 ------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
++ + E ++ LIDMY+KCG++ A FD ++ + +AM+VGY
Sbjct: 273 GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSK 332
Query: 218 H 218
H
Sbjct: 333 H 333
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 124/335 (37%), Gaps = 115/335 (34%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
K + + V L+ MYA G ++ A F R DVV + MI G
Sbjct: 145 KHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAG------------ 192
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
Y D E ++ + N+
Sbjct: 193 ----------YHRCGDAKSARELFDRMP---------------------------ERNLV 215
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWM------------------------------DYYI 316
W+ MISGYA+N E+AV+ F Y+
Sbjct: 216 TWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYV 275
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
+++ N+I+ T ++DMYA+CG+V+ A M F++ +KDV+ +A+ G +HG E+
Sbjct: 276 MRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKAL 335
Query: 377 VLFHHI------------------------------------RKHGIEPRHQHYARVVDL 400
F + R HG+EPR +HY +VDL
Sbjct: 336 WYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDL 395
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L RAG A KF++ MP++ + RALL A +I
Sbjct: 396 LGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRI 430
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 153/387 (39%), Gaps = 96/387 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD---------------------------- 162
+ N+ N++I+ Y +NG +EA+ LF + M
Sbjct: 210 ERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQ 269
Query: 163 ---YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--- 216
+ +R ++++N L+DMYAKCG A FDR + VV ++MI GY
Sbjct: 270 VHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSA 329
Query: 217 ----------------LHEWSAFGSFDGLLSNEEN------------------EYGTALD 242
+ W+ + S EE YG L+
Sbjct: 330 NVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLN 389
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
+L L+ G+ H ++K G +S + +V + N+++ Y K G
Sbjct: 390 ACANLANLQLGQQAHVHVLKEGFRFDSG----------PESDVFVGNSLVDMYLKTGSIS 439
Query: 303 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
+ K+F + R+NV N +++ YA+ G A + F+R L + S
Sbjct: 440 DGAKVFERMA--------ARDNVSWNAMIVG-YAQNGRAKDALLLFERMLCSNERPDSVT 490
Query: 363 TVGY----GLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
+G G GL +EG F + + HGI P HY ++DLL RAG+ + I NM
Sbjct: 491 MIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENM 550
Query: 418 PIELRLSVRRALLSAWK----IPMQQW 440
P+E + +LL A + I M +W
Sbjct: 551 PMEPDAVLWASLLGACRLHKNIDMGEW 577
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%)
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
NA A + A E + + + KS + ++V + T L+DMYAKC + A F
Sbjct: 146 NAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVF 205
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
D ++++V +++ Y +G +E LF + K G P A V+ A
Sbjct: 206 DAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACA 259
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 126/323 (39%), Gaps = 88/323 (27%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGY--GLHEWSAFGSFDGLLSNEE 234
T LI Y +CG +DLA FD+ KDVV+ +AM+ G+ SA FD +
Sbjct: 148 TALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV 207
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
+ T + C+++ ++ + + M + N+ WN MI G
Sbjct: 208 ITWTTMIHGYCNIKDIDAARKLFDAMP--------------------ERNLVSWNTMIGG 247
Query: 295 YAKNGYAEEAVKLFPK-------------------------------WMDYYIGKSEYRN 323
Y +N +E + LF + W ++ + +
Sbjct: 248 YCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDK 307
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG------------- 370
V V T ++DMY+KCG ++ A FD +K V +AM GY L+G
Sbjct: 308 KVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM 367
Query: 371 ---------------------LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409
L EEG FH +R+ G+ + +HY +VDLL RAG
Sbjct: 368 IEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKE 427
Query: 410 AFKFIMNMPIELRLSVRRALLSA 432
A I NMP E + + LSA
Sbjct: 428 AEDLITNMPFEPNGIILSSFLSA 450
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 151/408 (37%), Gaps = 152/408 (37%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
+ NV N++I+ Y +NG EA+ LF + M E
Sbjct: 214 ERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQ 273
Query: 171 -----------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
R+++++N L+DMYAKCG A FD + +V ++++ GY
Sbjct: 274 VHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGY---- 329
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
+ N +E ++V M+
Sbjct: 330 -----------AKSAN--------------VEDAQVVFSQMV------------------ 346
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPK------WMDYY----------------IG 317
+ NV WN +I+ YA+NG EEA++LF + W +Y +G
Sbjct: 347 --EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLG 404
Query: 318 KSEY--------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+ + ++V V L+DMY K GS+D F+R +D V +AM
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 464
Query: 364 VGY-----------------------------------GLHGLGEEGWVLFHHIRK-HGI 387
VGY G GL +EG FH + + HGI
Sbjct: 465 VGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGI 524
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P HY +VDLL RAG+ A + I +MP+E + +LL A ++
Sbjct: 525 TPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRL 572
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 107/276 (38%), Gaps = 70/276 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIV---F 57
M A +P+ T V+ AC L + G +VH + D L D ++
Sbjct: 243 MMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKC--------DRLRDDMVLNNAL 294
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 117
+D+Y RT W A FD + S + L +E ++V M+
Sbjct: 295 VDMYAKCGRT-WEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMV------- 346
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK------WMDYY------- 164
+ NV N +I+ YA+NG EEA++LF + W +Y
Sbjct: 347 -------------EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLN 393
Query: 165 ---------IGKSEY--------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201
+G+ + ++V V L+DMY K GS+D F+R
Sbjct: 394 ACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMA 453
Query: 202 DKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNEEN 235
+D V +AMIVGY + + A F+ +L + EN
Sbjct: 454 ARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN 489
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 115/303 (37%), Gaps = 67/303 (22%)
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
L N ++S YA+ G +A ++F + RN N L+ YA+ G D A
Sbjct: 54 LLNTLVSTYARLGRLRDARRVFDEI--------PLRNTFSYNA-LLSAYARLGRPDEARA 104
Query: 196 FFDRTLDKDVVMRSAMIVGYGLH---------EWSAFGSFDGLLSNEENEYGTALDCSCD 246
F+ D D +A++ H + A D + N + + +AL
Sbjct: 105 LFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYS-FASALSACAA 163
Query: 247 LEFLEQGKIVHGFMIKL----GLELESDLLISLTAVCRY------------QPNVTLWNA 290
+ G+ VHG + + + + S L+ + A C + NV WN+
Sbjct: 164 EKDSRTGEQVHGLVARSPHADDVHIRS-ALVDMYAKCERPEDARRVFDAMPERNVVSWNS 222
Query: 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEY----------------------------- 321
+I+ Y +NG EA+ LF + M E
Sbjct: 223 LITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCD 282
Query: 322 --RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
R+++++N L+DMYAKCG A FD + +V +++ GY E+ V+F
Sbjct: 283 RLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVF 342
Query: 380 HHI 382
+
Sbjct: 343 SQM 345
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
+ +S + ++V + + L+DMYAKC + A FD +++VV +++ Y +G E
Sbjct: 177 VARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEA 236
Query: 376 WVLFHHIRKHGIEP 389
+LF + G P
Sbjct: 237 LMLFVEMMAAGFSP 250
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/389 (23%), Positives = 170/389 (43%), Gaps = 79/389 (20%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAV 154
D+ L +G+ VH ++K G EL DL + RN+ I Y+ G +A
Sbjct: 170 DIGSLREGQKVHALVVKFGFEL--DLFV--------------RNSFIRFYSVCGRTSDAR 213
Query: 155 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
+F + + +++ +ID Y K G + LA FD ++D+ ++MI G
Sbjct: 214 MVF---------DNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISG 264
Query: 215 Y-GLHEW-SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE--LESD 270
Y G+ + +A G FD + S + + +D ++ + F ++ L + +
Sbjct: 265 YVGVGDMEAARGLFDKMPSRDVVSWNCMID---GFARIKDVSMAAKFFDEMPLRNVVSWN 321
Query: 271 LLISLTAVCR-YQPNVTLWNAMISG----------YAKNGYAEEAVKLFPKWMDYYIGKS 319
++++L C+ Y + ++ M+ G AE + KW+ Y+ +
Sbjct: 322 VMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDN 381
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+ +++++T L+ MYAKCG++DLA FD+ +K VV ++M +GYG+HG G++ +F
Sbjct: 382 GIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMF 441
Query: 380 HHI------------------------------------RKHGIEPRHQHYARVVDLLAR 403
+ RK+ I+P+ +HY +VDLL +
Sbjct: 442 REMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLGQ 501
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSA 432
AG + E+ ++ LLSA
Sbjct: 502 AGLKEPSEDLTRKTHTEVEPTLWGDLLSA 530
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 136/337 (40%), Gaps = 84/337 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
++ K +V + + I MY G V+ A + DV+ +AMI
Sbjct: 155 HVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMI----------- 203
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
DG L E E L S + + + ++ M K G+ E+ L + +
Sbjct: 204 ---DGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMK----EK 256
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
N W+AMI GY K GY +EA+++F +W+
Sbjct: 257 NEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIH 316
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
Y+ + + ++ T L+DMYAKCG +D+A F++ K+V +AM G G+HG E
Sbjct: 317 AYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAE 376
Query: 374 EGWVLFHHIRK------------------------------------HGIEPRHQHYARV 397
+ LF ++K +GIEP +HY V
Sbjct: 377 DAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCV 436
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
VDLL RAG A + + +MP+E +V ALL A +
Sbjct: 437 VDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACR 473
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 164/411 (39%), Gaps = 97/411 (23%)
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------QPNVTLRNAMISGYAKNGYA 150
+ L++G I H + L + + S R PN + N MI Y+ +
Sbjct: 33 QLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDP 92
Query: 151 EEAVKLFPKWMDYYIGKSEYR------------------------------NNVIVNTVL 180
EEA+ L+ + + + I + Y + V L
Sbjct: 93 EEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSL 152
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEY 237
+ +YA GS+ A + FD +D+V + MI GY G E A+ F + E+N
Sbjct: 153 LRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEM-AYKIFQAM--PEKN-- 207
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297
+ ++ GF ++ G+ E+ L+ V +P+ + +S A
Sbjct: 208 -----------VISWTSMIVGF-VRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAG 255
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
G E+ KW+ YIGK++ + + ++ LIDMY KCG + A + F + K V
Sbjct: 256 LGALEQG-----KWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVY 310
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-------------------------- 391
+A+ G+ +HG G E F ++K GI+P
Sbjct: 311 TWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESM 370
Query: 392 ----------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+HY +VDLL RAG+ A +F+ +MPI+ ++ +LL+A
Sbjct: 371 STFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNA 421
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 21/225 (9%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTI 55
+ N T P +LKAC AL +L ++H QI GF L Y G
Sbjct: 107 IPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAH 166
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 113
V DL W+ DG + N E Y + + ++ GF ++ G
Sbjct: 167 VLFDLLPSRDIVSWNTM--IDGYIKCGNVEMAY-KIFQAMPEKNVISWTSMIVGF-VRTG 222
Query: 114 LELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 173
+ E+ L+ V +P+ + +S A G E+ KW+ YIGK++ + +
Sbjct: 223 MHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQG-----KWIHTYIGKNKIKID 277
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
++ LIDMY KCG + A + F + K V +A+I G+ +H
Sbjct: 278 PVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVH 322
>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
Length = 917
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 117/532 (21%), Positives = 212/532 (39%), Gaps = 124/532 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFD------G 49
M+ + V PN T + AC + S+ G +H Q+ GF + C + +
Sbjct: 195 MRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGS 254
Query: 50 LFDRTIVFLDLYHLWSRTEWSAFGS-------------------FDGLLSNEENEYGTAL 90
L D VF + H + W+A + G ++ ++ + T L
Sbjct: 255 LEDAREVFERMPHP-NTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITIL 313
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQPNVTLR---------- 137
+ L G+++H +++ G + + + ++++ + C N
Sbjct: 314 NACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAI 373
Query: 138 --NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN------------------ 177
N +ISG+A+ G+ +EAV LF + + I ++ I++
Sbjct: 374 SWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQEAKILSELMVES 433
Query: 178 ---------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG-- 224
+ LI+M+++ G+V A FD D+D+VM +++I Y H S A G
Sbjct: 434 GVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCT 493
Query: 225 ---SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAV 278
+GL+ N+ TAL+ L L +GK++H I+ G + LI++ A
Sbjct: 494 RLMRLEGLMGNDFT-LVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAK 552
Query: 279 C-----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW---------------M 312
C + N+ WN + + Y + EA++LF + +
Sbjct: 553 CGCLEEADRVFHQCGKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVL 612
Query: 313 DYYIGKSEYR------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+ SE R ++ IV+T L++MY S+D A F R +D+V +
Sbjct: 613 NGCSSASEGRKIHNILLETGMESDHIVSTALLNMYTASKSLDEASRIFSRMEFRDIVSWN 672
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK 412
AM G HGL E +F ++ G+ P + V++ A +G S + K
Sbjct: 673 AMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLN--AFSGSSPSSLK 722
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 140/328 (42%), Gaps = 58/328 (17%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K + ++ ++ NV+V T LI MY KCG V+ A FD+ +DVV ++MI+ Y H
Sbjct: 123 KLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQH 182
Query: 219 EW--SAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
+ A F G+L N Y TA+ +E + GK++H +++ G ESD+
Sbjct: 183 DRCVEALELFHRMRPSGVLPNRIT-YATAISACAHVESMADGKLIHSQVLEDG--FESDV 239
Query: 272 LISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW--- 311
++S V Y PN WNA+++ ++G EA+ F +
Sbjct: 240 VVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQ 299
Query: 312 ----------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+ I + Y ++IV ++ MY+ CG +D
Sbjct: 300 GGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDN 359
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR 403
A FF +++D + + + G+ G +E LF + GI P + ++D AR
Sbjct: 360 AAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTAR 419
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLS 431
+ + ++ +EL + + AL++
Sbjct: 420 MQEAKILSELMVESGVELDVFLVSALIN 447
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 112/458 (24%), Positives = 186/458 (40%), Gaps = 100/458 (21%)
Query: 46 LFDGLFDRTIVFLDLYHLWSR--TEWSAFGSFD------------GLLSNEENEYGTALD 91
LFD + DR IV +W+ + + GS D GL+ N+ TAL+
Sbjct: 461 LFDDMKDRDIV------MWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFT-LVTALN 513
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC-----------RYQPNVTLR 137
L L +GK++H I+ G + LI++ A C + N+
Sbjct: 514 ACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQCGKNLVSW 573
Query: 138 NAMISGYAKNGYAEEAVKLFPKW---------------MDYYIGKSEYR----------- 171
N + + Y + EA++LF + ++ SE R
Sbjct: 574 NTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASEGRKIHNILLETGM 633
Query: 172 -NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDG 228
++ IV+T L++MY S+D A F R +D+V +AMI G H S A F
Sbjct: 634 ESDHIVSTALLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQR 693
Query: 229 L----LSNEENEYGTALDC--SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
+ ++ ++ + T L+ L+Q ++V + G Y+
Sbjct: 694 MQLEGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQG----------------YE 737
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
+ + NA++S + ++G EA + F + + + NVIV +A+ G V+
Sbjct: 738 TDTIVGNAIVSMFGRSGRLAEARRAFERIRE----RDAASWNVIVTA-----HAQHGEVE 788
Query: 343 LAPMFFDRTLDK----DVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARV 397
A F R + D + ++ GL EEG+ F + R+ GI +HY V
Sbjct: 789 QALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEEGYHHFTSMGREFGIAGSQEHYGCV 848
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VDLLARAG + A + + MP+ + LLSA K+
Sbjct: 849 VDLLARAGRLDQAEELLRKMPVPASYVLWMTLLSACKV 886
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 113/596 (18%), Positives = 218/596 (36%), Gaps = 164/596 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVC-- 44
M++ +AP+ T VL C A+ L G +HG + G + C
Sbjct: 94 MKLQGLAPDRITFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGC 153
Query: 45 -----YLFDGL-----------------FDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNE 82
+FD L DR + L+L+H + G+L N
Sbjct: 154 VEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPS---------GVLPNR 204
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------ 130
Y TA+ +E + GK++H +++ G E SD+++S V Y
Sbjct: 205 IT-YATAISACAHVESMADGKLIHSQVLEDGFE--SDVVVSCAIVNMYGKCGSLEDAREV 261
Query: 131 -----QPNVTLRNAMISGYAKNGYAEEAVKLFPKW------------------------- 160
PN NA+++ ++G EA+ F +
Sbjct: 262 FERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPAT 321
Query: 161 ------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
+ I + Y ++IV ++ MY+ CG +D A FF +++D + + +I G
Sbjct: 322 LTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISG 381
Query: 215 YGLHEW--SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
+ + A F +L+ ++ + + +D + +++ KI+ M++ G+EL+
Sbjct: 382 HAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTAR---MQEAKILSELMVESGVELD 438
Query: 269 SDLLISLTAV-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFP---- 309
L+ +L + RY ++ +W ++IS Y ++G +++A+
Sbjct: 439 VFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRL 498
Query: 310 --------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
K + + + + + V LI+MYAKCG ++
Sbjct: 499 EGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCLEE 558
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR 403
A F + K++V + + Y E LF ++ G++ + V++ +
Sbjct: 559 ADRVFHQC-GKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSS 617
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDKR 459
A ++ +E V ALL NM + +DE + R
Sbjct: 618 ASEGRKIHNILLETGMESDHIVSTALL-----------NMYTASKSLDEASRIFSR 662
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 111/283 (39%), Gaps = 52/283 (18%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+++ + SE+R + +V I MY KCG V+ A F V ++++ +
Sbjct: 22 RFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVSVFQSLDHPSQVSWNSLLAAFARD 81
Query: 219 EWSAFGSFDGL------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LES 269
L+ + + T LD + L +GK++HGF+++ GLE +
Sbjct: 82 GQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVG 141
Query: 270 DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
LI + C +V W +MI Y ++ EA++LF
Sbjct: 142 TSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVL 201
Query: 309 PKWMDYYIGKSE---------------------YRNNVIVNTVLIDMYAKCGSVDLAPMF 347
P + Y S + ++V+V+ +++MY KCGS++ A
Sbjct: 202 PNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREV 261
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR-KHGIEP 389
F+R + V +A+ HG E F ++ + GI P
Sbjct: 262 FERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITP 304
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 164/399 (41%), Gaps = 102/399 (25%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLRNAMISG 143
LE GK +H +IK G + + + L+S+ C P +V N M+
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203
Query: 144 YAKNGYAEEAVKLF------------------------PKWMDYYIGKSEYR-------- 171
YA+ Y +E + LF P +D GK ++
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE--GKRIHKLTVEEGLN 261
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSF--- 226
+++ V T L+ M +CG VD A F T D+DVV+ +A+I H AF +
Sbjct: 262 SDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRM 321
Query: 227 --DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY 281
DG+ N Y + L+ + LE GK++H + + G + + LIS+ A C
Sbjct: 322 RSDGVALN-RTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD 380
Query: 282 QP------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMD---------------- 313
P ++ WNA+I+GYA+ EA++L+ +
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440
Query: 314 ------YYIGK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
Y GK S ++N + L++MY +CGS+ A F+ T +DV+
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISW 500
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
++M G+ HG E + LF ++ +EP + +A V+
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVL 539
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 160/416 (38%), Gaps = 119/416 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK 167
N+MI+G+A++G E A KLF K + I +
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
S + +V + LI+MY +CGS+ A F +DV+ +AMI G + A
Sbjct: 561 SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620
Query: 226 FDGLLSNE-----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTA 277
F + NE ++ + + L L++GK V +++ G EL++ + LIS +
Sbjct: 621 F-WQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYS 679
Query: 278 ----------VCRYQP--NVTLWNAMISGYAKNGYAEEAVK---------LFP------- 309
V P ++ WN +I+GYA+NG + AV+ + P
Sbjct: 680 KSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVS 739
Query: 310 --------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + I K + + +V V LI MYAKCGS A FD ++K+
Sbjct: 740 LLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKN 799
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-------------------------- 389
VV +AM Y HGL + F+ + K GI+P
Sbjct: 800 VVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFS 859
Query: 390 ----------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +V LL RA A I MP +V LL A +I
Sbjct: 860 SMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRI 915
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 168/415 (40%), Gaps = 107/415 (25%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP 132
DG+ N Y + L+ + LE GK++H + + G + + LIS+ A C P
Sbjct: 324 DGVALNRTT-YLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382
Query: 133 ------------NVTLRNAMISGYAKNGYAEEAVKLFPKWMD------------------ 162
++ NA+I+GYA+ EA++L+ +
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442
Query: 163 ----YYIGK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
Y GK S ++N + L++MY +CGS+ A F+ T +DV+ ++
Sbjct: 443 NSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNS 502
Query: 211 MIVGYGLHEWSAFGSFDGL------LSNEENE-----YGTALDCSCDLEFLEQGKIVHGF 259
MI G+ H GS++ + NEE E + + L + E LE GK +HG
Sbjct: 503 MIAGHAQH-----GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGR 557
Query: 260 MIKLGLELESDL---LISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEA 304
+ + GL+L+ +L LI++ C +V W AMI G A G +A
Sbjct: 558 ITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKA 617
Query: 305 VKLF------------------------------PKWMDYYIGKSEYRNNVIVNTVLIDM 334
++LF K + YI S Y + V LI
Sbjct: 618 IELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISA 677
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
Y+K GS+ A FD+ +D+V + + GY +GLG+ + +++ + P
Sbjct: 678 YSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVP 732
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 130/315 (41%), Gaps = 62/315 (19%)
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
A++ + EA ++ + ++ ++G ++ ++ +LI+MY KC SV A F
Sbjct: 32 ALLQNCTRKRLLPEAKRIHAQMVEAWVGP-----DIFLSNLLINMYVKCRSVLDAHQVFK 86
Query: 199 RTLDKDVVMRSAMIVGYGLH--EWSAFGSFD-----GLLSNEENEYGTALDCSCDLEFLE 251
+DV+ +++I Y + AF F+ G + N+ C E LE
Sbjct: 87 EMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE-LE 145
Query: 252 QGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP------------NVTLWNAMISGYA 296
GK +H +IK G + + + L+S+ C P +V +N M+ YA
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 297 KNGYAEEAVKLF------------------------PKWMDYYIGKSEYR--------NN 324
+ Y +E + LF P +D GK ++ ++
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE--GKRIHKLTVEEGLNSD 263
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ V T L+ M +CG VD A F T D+DVV+ +A+ HG E + ++ +R
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323
Query: 385 HGIEPRHQHYARVVD 399
G+ Y +++
Sbjct: 324 DGVALNRTTYLSILN 338
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/391 (21%), Positives = 156/391 (39%), Gaps = 102/391 (26%)
Query: 98 FLEQGKIVHGFMIK--LGLEL-ESDLLISLTAVCRY------------QPNVTLRNAMIS 142
L + K +H M++ +G ++ S+LLI++ CR + +V N++IS
Sbjct: 42 LLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLIS 101
Query: 143 GYAKNGYAEEAVKLF---------PKWMDY---------------------YIGKSEYRN 172
YA+ G+ ++A +LF P + Y I K+ Y+
Sbjct: 102 CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQR 161
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF-----GSFD 227
+ V L+ MY KCG + A F +DVV + M+ GL+ A+ G F
Sbjct: 162 DPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTML---GLYAQKAYVKECLGLFG 218
Query: 228 GL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC---- 279
+ +S ++ Y LD L++GK +H ++ GL + + +L +C
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCG 278
Query: 280 -----------RYQPNVTLWNAMISGYAKNGYAEEAVKLF-------------------- 308
+V ++NA+I+ A++G+ EA + +
Sbjct: 279 DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338
Query: 309 ----------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K + +I + + ++V + LI MYA+CG + A F +D++
Sbjct: 339 ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLIS 398
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+A+ GY E L+ ++ G++P
Sbjct: 399 WNAIIAGYARREDRGEAMRLYKQMQSEGVKP 429
>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 118/520 (22%), Positives = 197/520 (37%), Gaps = 153/520 (29%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ +++ T VL+AC + +L ++HG +F G D + +
Sbjct: 766 MQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGL------DSDVSLCNPLISM 819
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
Y + E A FD + + + + + + L FL L ELES
Sbjct: 820 YSKNGKLEL-ARRVFDSMENRNTSSWNSMISSYAALGFLNDA-------WSLFYELESSD 871
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP---------------------- 158
+ +P++ N ++SG+ +GY EE + +
Sbjct: 872 M---------KPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAIS 922
Query: 159 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
K Y+ ++ + +V V T LIDMY K S+ A FD ++++ ++
Sbjct: 923 ELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNS 982
Query: 211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
++ GY SF G+ + L L Q M K G+
Sbjct: 983 LVSGY---------SFKGMFEDA-------------LRLLNQ-------MEKEGI----- 1008
Query: 271 LLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA-----------------VKLFPKWMD 313
+P++ WN MISGYA G A +A + L K +
Sbjct: 1009 -----------KPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKE 1057
Query: 314 YYI--GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ ++ + +V V T LIDMY+K S+ A F R +K + + M +G+ + GL
Sbjct: 1058 IHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGL 1117
Query: 372 GEEGWVLFHHIRKHG------------------------------------IEPRHQHYA 395
G+E +F+ ++K G I PR +HY
Sbjct: 1118 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYC 1177
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAGY + A+ I MP++ ++ ALL + +I
Sbjct: 1178 CMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRI 1217
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 141/373 (37%), Gaps = 64/373 (17%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RY 130
Y AL + + G +HG +IK G +L+ L L++ C
Sbjct: 677 YSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMP 736
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
P L N I ++ ++ V+LF K M + K+E V V M A +
Sbjct: 737 NPEALLWNEAIILNLQSEKLQKGVELFRK-MQFSFLKAETATIVRVLQACGKMGALNAAK 795
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGLLSNEENEYGTALDCSCDLE 248
+ F LD DV + + +I Y + FD + + + + + + L
Sbjct: 796 QIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALG 855
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
FL L ELES + +P++ WN ++SG+ +GY EE + +
Sbjct: 856 FLNDA-------WSLFYELESSDM---------KPDIVTWNCLLSGHFLHGYKEEVLNIL 899
Query: 309 P------------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKC 338
K Y+ ++ + +V V T LIDMY K
Sbjct: 900 QRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKN 959
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
S+ A FD ++++ +++ GY G+ E+ L + + K GI+P + ++
Sbjct: 960 HSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI 1019
Query: 399 DLLARAGYSNHAF 411
A G + AF
Sbjct: 1020 SGYAMWGCARKAF 1032
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 174/442 (39%), Gaps = 106/442 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 130
S E N Y T + C E+ K +H M+K GL +S + + C
Sbjct: 8 FSLEHNLYET-MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLP 66
Query: 131 ----------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------------------- 161
+P+ L N MI G++ + E ++ L+ + +
Sbjct: 67 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 162 -----------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
I K Y N+V LI+ YA G+ LA + FDR + D V ++
Sbjct: 127 NLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNS 186
Query: 211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
+I GY G D L T + + ++ G+ ++ + E+
Sbjct: 187 VIKGY-----VKAGKMDIAL--------TLFRKMAEKNAISWTTMISGY-VQADMNKEAL 232
Query: 271 LLISLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
L +P NV+L NA+ S A+ G E+ KW+ Y+ K+ R + ++
Sbjct: 233 QLFHEMQNSDVEPDNVSLANAL-SACAQLGALEQG-----KWIHSYLNKTRIRMDSVLGC 286
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG----------------- 372
VLIDMYAKCG ++ A F K V +A+ GY HG G
Sbjct: 287 VLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKP 346
Query: 373 ------------------EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
EEG ++F+ + R + ++P +HY +VDLL RAG + A +F
Sbjct: 347 NVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRF 406
Query: 414 IMNMPIELRLSVRRALLSAWKI 435
I MP++ + ALL A +I
Sbjct: 407 IQEMPLKPNAVIWGALLKACRI 428
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 143/370 (38%), Gaps = 105/370 (28%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG----- 224
+ +++ V+ +I + CG +D A FD++ +D+V ++MI GY W+
Sbjct: 110 FDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYR 169
Query: 225 --SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL------- 275
+G+ +E G C+ LE L+ G+ H ++ + GL+L L +L
Sbjct: 170 EMKVEGIKPDEVTMIGVVSSCA-QLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKC 228
Query: 276 ----------------------TAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPK- 310
T + P +V WNAMI GY +EA+ LF +
Sbjct: 229 GNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEM 288
Query: 311 -----------------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
W+ +YI K E NV + T LIDMYAKCG +
Sbjct: 289 QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKI 348
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLH-------------------------------- 369
A F ++ + +A+ G LH
Sbjct: 349 TKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSAC 408
Query: 370 ---GLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
GL EEG F + K + P+ +HY+ +VDLL RAG A + I +MPIE V
Sbjct: 409 CHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVV 468
Query: 426 RRALLSAWKI 435
AL A +I
Sbjct: 469 WGALFFACRI 478
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/404 (22%), Positives = 148/404 (36%), Gaps = 112/404 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF--------------LVCYL 46
+Q P+ T PL+ KAC L + MG + G + LGF + C
Sbjct: 70 LQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGD 129
Query: 47 FDG---LFDRTIV-----FLDLYHLWSRTEWSAFG-------SFDGLLSNEENEYGTALD 91
DG +FD++ V + + + + R W+ +G+ +E G
Sbjct: 130 LDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSS 189
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISL--------------------------- 124
C+ LE L+ G+ H ++ + GL+L L +L
Sbjct: 190 CA-QLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVS 248
Query: 125 --TAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPK--------------------- 159
T + P +V NAMI GY +EA+ LF +
Sbjct: 249 WTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACS 308
Query: 160 ---------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
W+ +YI K E NV + T LIDMYAKCG + A F ++ + +A
Sbjct: 309 QLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTA 368
Query: 211 MIVGYGLH--EWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 264
+I G LH A F ++ N +E + L C +E+G+ K
Sbjct: 369 IISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR-------KYF 421
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
++ S +S P + ++ M+ + G EEA +L
Sbjct: 422 SQMSSKFNLS--------PKLKHYSCMVDLLGRAGLLEEAEELI 457
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 158/390 (40%), Gaps = 101/390 (25%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
NV N M+ GYA+NG ++A+ LF + + RN V NT+ I +CG ++
Sbjct: 94 NVVSWNTMVDGYARNGLTQQALDLFRRMPE--------RNVVSWNTI-ITALVQCGRIED 144
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFD-----GLLSNEENEYGTALDCSC 245
A FD+ D+DVV + M+ G + A FD ++S G A +
Sbjct: 145 AQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRL 204
Query: 246 D--LEFLEQ---------GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
D L+ ++ ++ GF+ L L + + NV W AM++G
Sbjct: 205 DEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQ-----EKNVITWTAMMTG 259
Query: 295 YAKNGYAEEAVKLFPKWM-------------------------------DYYIGKSEYRN 323
Y ++G +EEA+++F K + I K+ +++
Sbjct: 260 YVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQD 319
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ V + LI+MY+KCG + A FD L +D++ + M Y HG G+E LF+
Sbjct: 320 STCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNE 379
Query: 382 IRKHG------------------------------------IEPRHQHYARVVDLLARAG 405
+++ G I+ R HYA +VDL RAG
Sbjct: 380 MQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAG 439
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A I + E+ L+V ALL+ +
Sbjct: 440 RLKEASNIIEGLGEEVPLTVWGALLAGCNV 469
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 114/263 (43%), Gaps = 32/263 (12%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ ++ L MI+GY K G EA KLF +W + + NV+ T +++ Y K V
Sbjct: 29 ERDIGLWTTMITGYLKCGMIREARKLFDRW--------DAKKNVVTWTAMVNGYIKFNQV 80
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDL 247
A F ++VV + M+ GY GL + A F + + T +
Sbjct: 81 KEAERLFYEMPLRNVVSWNTMVDGYARNGLTQ-QALDLFRRMPERNVVSWNTIITALVQC 139
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------NVTLWNAMISGYA 296
+E + + M + + ++ L R + NV WNAMI+GYA
Sbjct: 140 GRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYA 199
Query: 297 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+N +EA++LF + + R+ NT +I + + G ++ A F +K+V
Sbjct: 200 QNRRLDEALQLFQRMPE--------RDMPSWNT-MITGFIQNGELNRAEKLFGEMQEKNV 250
Query: 357 VMRSAMTVGYGLHGLGEEGWVLF 379
+ +AM GY HGL EE +F
Sbjct: 251 ITWTAMMTGYVQHGLSEEALRVF 273
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ ++ LW MI+GY K G EA KLF +W + + NV+ T +++ Y K V
Sbjct: 29 ERDIGLWTTMITGYLKCGMIREARKLFDRW--------DAKKNVVTWTAMVNGYIKFNQV 80
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
A F ++VV + M GY +GL ++ LF + + +
Sbjct: 81 KEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNV 126
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 113/449 (25%), Positives = 186/449 (41%), Gaps = 78/449 (17%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDL 60
V PN T P V KA + + G ++HG G F+ C FD ++ +T D
Sbjct: 104 VQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFD-MYCKTGFRGDA 162
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
+++ +++ +SN + + EFL VHG
Sbjct: 163 CNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFL----CVHG------------- 205
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL-FPKWMDYYIGKSEYRNNVIVNTV 179
+PN A ++ + V+L + + +I + Y+ +V V
Sbjct: 206 ----------EPNSITFCAFLNACV------DMVRLNLGRQLHAFIVRCGYKEDVSVANG 249
Query: 180 LIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE-- 236
LID Y KCG + A M F+R + K+VV +M+ + L + +E E
Sbjct: 250 LIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKEVEPT 309
Query: 237 ---YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
+ L +L LE G+ VH +K +E N+ + +A++
Sbjct: 310 DFMISSVLSACAELGGLELGRSVHALAVKACVE----------------DNIFVGSALVD 353
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR-TL 352
Y K G E A ++F + + N++ +I YA G +D+A F+ TL
Sbjct: 354 MYGKCGSIENAEQVFSELPE---------RNLVTWNAMIGGYAHQGDIDMALRLFEEMTL 404
Query: 353 DKDVVMRSAMTVGYGLH-----GLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGY 406
+ S +T+ L G E G +F +R +GIEP +H+A VVDLL R+G
Sbjct: 405 GSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGL 464
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ A++FI NM I+ +SV ALL A ++
Sbjct: 465 VDRAYEFIQNMAIQPTISVWGALLGACRM 493
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 170/419 (40%), Gaps = 94/419 (22%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-AVCR----- 129
DG+L++ C+ +L K+VH + KLG + + SL CR
Sbjct: 117 DGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVE 176
Query: 130 ---------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
+ +V N+M+ G KNG + A+K+F + + R+ V NT+L
Sbjct: 177 MAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPE--------RDRVSWNTML 228
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD--GLLSNEENEYG 238
D + K G +D A F+R ++D+V S M+ GY S G D +L +
Sbjct: 229 -DGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGY-----SKNGDMDMARMLFDRCPVKN 282
Query: 239 TALDCSCDLEFLEQGKIVHGF-----MIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
L + + E+G++ M K GL L+ IS+ A C
Sbjct: 283 LVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAAC-------------- 328
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD-RTL 352
AE + K M +S +R + V IDMYAKCG VD A F+
Sbjct: 329 -------AESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKT 381
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------------------ 382
+KD+V ++M G+G+HG GE+ LF+ +
Sbjct: 382 EKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRG 441
Query: 383 ------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R +GI P+ +HY +VDLL R G+ AF + +MP E + LL A ++
Sbjct: 442 YFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRM 500
>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
Length = 598
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 140/354 (39%), Gaps = 112/354 (31%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----------- 215
K Y NV V + L+DMYAKC V+ A F + + V +A+I G+
Sbjct: 129 KGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFW 188
Query: 216 --GLHEWSAF-----GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
GL E A G+F LL T LD D F K VH ++KLGL+ E
Sbjct: 189 LLGLMEMKAAVTMDAGTFAPLL--------TLLD---DPMFCNLLKQVHAKVLKLGLQHE 237
Query: 269 ---SDLLISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAEEAVKLFP--- 309
+ +IS A C ++ WN+MI+G+A+ G +E+AVK F
Sbjct: 238 ITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFAQKGLSEDAVKFFSYLR 297
Query: 310 ----KWMDYYIG-----------------------KSEYRNNVIVNTVLIDMYAKCGSVD 342
K DY KS + +N V + LI MY+KCG ++
Sbjct: 298 SSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIE 357
Query: 343 LAPMFFDRTLDK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--------------- 386
A F + K V +AM +GY HGLG+ LF +
Sbjct: 358 SARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTAC 417
Query: 387 ---------------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
I+PR +HYA VDLL RAG N A + I +MP+
Sbjct: 418 SHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPL 471
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 104/270 (38%), Gaps = 53/270 (19%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE--WSAFGSF 226
+++ V+ ++D Y K G + A M FD +D V + MI GY G E W F
Sbjct: 33 SDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCM 92
Query: 227 DGLLSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR-- 280
S+ + + L ++ + G+ VHG +IK G E L+ + A C
Sbjct: 93 KRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERV 152
Query: 281 ----------YQPNVTLWNAMISGYA-----------------KNGYAEEAVKLFP---- 309
+PN WNA+I+G+ K +A P
Sbjct: 153 EDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTL 212
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVM 358
K + + K ++ + + +I YA CGSV A FD KD++
Sbjct: 213 LDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLIS 272
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
++M G+ GL E+ F ++R I+
Sbjct: 273 WNSMIAGFAQKGLSEDAVKFFSYLRSSEIK 302
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 64/298 (21%)
Query: 103 KIVHGFMIKLGLELE---SDLLISLTAVCRY-------------QPNVTLRNAMISGYAK 146
K VH ++KLGL+ E + +IS A C ++ N+MI+G+A+
Sbjct: 223 KQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFAQ 282
Query: 147 NGYAEEAVKLFP-------KWMDYYIG-----------------------KSEYRNNVIV 176
G +E+AVK F K DY KS + +N V
Sbjct: 283 KGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFV 342
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
+ LI MY+KCG ++ A F + K V +AMI+GY H G L ++
Sbjct: 343 ISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQH---GLGQVSLDLFSQMC 399
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
LD L H +I+ GLE LL + V + QP + + A +
Sbjct: 400 NQNVKLDHVTFTAILT--ACSHTGLIQEGLE----LLNLMEPVYKIQPRMEHYAAAVDLL 453
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+ G +A +L I + +V + + CG +++A + L+
Sbjct: 454 GRAGLVNKAKEL--------IESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLE 503
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+++ V+ ++D Y K G + A M FD +D V + M GY G E+ W LF +
Sbjct: 33 SDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCM 92
Query: 383 RKHGIEPRHQHYARVVDLLA 402
++ G + ++R++ +A
Sbjct: 93 KRSGSDVDGYSFSRLLKGIA 112
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 163/451 (36%), Gaps = 161/451 (35%)
Query: 96 LEFLEQGKIVHGFMIKLGL----ELESDLLISLTAVC------RY------QPNVTLRNA 139
L L G +HG K G LI++ A C R+ +V N
Sbjct: 128 LSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNI 187
Query: 140 MISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSE 169
MI GY++N + + +KL+ K + +I +
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNG 247
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+R + T L++MYA CG++ LA +D+ K +V+ +AM+ GY
Sbjct: 248 FRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYA------------- 294
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
L ++ + + M+ E DL VC W+
Sbjct: 295 ----------------KLGMVQDARFIFDRMV------EKDL------VC--------WS 318
Query: 290 AMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKS 319
AMISGYA++ EA++LF KW+ Y K+
Sbjct: 319 AMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKN 378
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+ + +N LIDMYAKCG++ A F+ K+V+ S+M + +HG + LF
Sbjct: 379 GFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALF 438
Query: 380 HH------------------------------------IRKHGIEPRHQHYARVVDLLAR 403
H I +H I P+ +HY +VDL R
Sbjct: 439 HRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCR 498
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
A + A + I MP + + +L+SA +
Sbjct: 499 ANHLRKAMELIETMPFPPNVIIWGSLMSACQ 529
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 99/410 (24%), Positives = 169/410 (41%), Gaps = 98/410 (23%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------Y 130
Y + L C LE GK +H +I+ G + + + L+++ C Y
Sbjct: 186 YISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIY 245
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF------------------------PKWMD---- 162
+ +V N M+ YA+ Y EE + LF P +D
Sbjct: 246 RRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKR 305
Query: 163 -YYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ + +E N+ I V T L M+ +CG V A + D+DVV+ +A+I H
Sbjct: 306 IHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGH 365
Query: 221 --SAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-- 271
AF + DG++ N Y + L+ + L G+++H + ++G + +
Sbjct: 366 YEEAFEQYYQMRSDGVVMNRTT-YLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGN 424
Query: 272 -LISLTAVCRYQP------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMD----- 313
LIS+ A C P ++ WNA+I+GYA+ EA+KL+ +
Sbjct: 425 SLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKP 484
Query: 314 -----------------YYIGK--------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
Y GK S ++N + L++MY +CGS+ A F
Sbjct: 485 GRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVF 544
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+ T +D++ ++M G+ HG E + LF ++K G+EP +A V+
Sbjct: 545 EGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVL 594
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 165/400 (41%), Gaps = 91/400 (22%)
Query: 97 EFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-----RYQPNVTLRN-------AMI 141
E LE G+ +H +I+ GL+L+ +L LI++ C Y+ +LR+ AMI
Sbjct: 601 EALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMI 660
Query: 142 SGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYR 171
G+A G +A +LF K + +I S Y
Sbjct: 661 GGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYE 720
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
+ V LI Y+K GS+ A FD+ ++D++ + MI GY + G +
Sbjct: 721 LDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYA---QNGLGGTALQFA 777
Query: 232 NEENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
+ E G L+ CS LE+GK VH ++K +
Sbjct: 778 YQMQEQGVVLNKFSFVSILNACS-SFSALEEGKRVHAEIVKR----------------KM 820
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
Q +V + A+IS YAK G EEA ++F + + NV+ +I+ YA+ G
Sbjct: 821 QGDVRVGAALISMYAKCGSLEEAQEVFDNFTE---------KNVVTWNAMINAYAQHGLA 871
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLH-----GLGEEGWVLFHHIR-KHGIEPRHQHYA 395
A FF+ +DK+ + T L GL EG +F + +HG+ P +HY
Sbjct: 872 SKALDFFN-CMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYG 930
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+V LL RAG A I MP +V LL A +I
Sbjct: 931 CLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRI 970
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 135/326 (41%), Gaps = 61/326 (18%)
Query: 130 YQPNVTLRNA-----MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
YQP T N ++ + EA ++ + ++ +G ++ ++ +LI+MY
Sbjct: 73 YQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGP-----DIFLSNLLINMY 127
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN----EENEYG 238
KC SV A F + +DV+ +++I Y + AF F+ + + + Y
Sbjct: 128 VKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYI 187
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQP 283
+ L C LE GK +H +I+ G + + + L+++ C Y+
Sbjct: 188 SILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRR 247
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLF------------------------PKWMD-----Y 314
+V +N M+ YA+ Y EE + LF P +D +
Sbjct: 248 DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH 307
Query: 315 YIGKSEYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
+ +E N+ I V T L M+ +CG V A + D+DVV+ +A+ HG E
Sbjct: 308 KLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYE 367
Query: 374 EGWVLFHHIRKHGIEPRHQHYARVVD 399
E + ++ +R G+ Y V++
Sbjct: 368 EAFEQYYQMRSDGVVMNRTTYLSVLN 393
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 114/266 (42%), Gaps = 81/266 (30%)
Query: 250 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLWNAMISG 294
LE+GK++H + +LGL+ ++ ++ + C + +V W +M+SG
Sbjct: 27 LERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSG 86
Query: 295 YAKNGYAEEAVKLFPK------------------------------WMDYYIGKSEYRNN 324
AK+GY +E++ LF K ++ I K E +
Sbjct: 87 LAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCD 146
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE----------- 373
+++ T L+DMYAKCGS+DLA F R ++V +AM G +HG GE
Sbjct: 147 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEX 206
Query: 374 ------------------------EGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSN 408
EG +F ++ K IEPR +HY VVDLL RA +
Sbjct: 207 DKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVD 266
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWK 434
A FI NMPI+ + LL A +
Sbjct: 267 DALAFIENMPIKANSVLWATLLGACR 292
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISG 143
LE+GK++H + +LGL+ ++ ++ + C + +V +M+SG
Sbjct: 27 LERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSG 86
Query: 144 YAKNGYAEEAVKLFPK------------------------------WMDYYIGKSEYRNN 173
AK+GY +E++ LF K ++ I K E +
Sbjct: 87 LAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCD 146
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+++ T L+DMYAKCGS+DLA F R ++V +AMI G +H
Sbjct: 147 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMH 191
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334
+T + +P+ +++ A+ G E K + Y + N+ VN ++DM
Sbjct: 1 MTKLDNLRPDEVTMVSLVPACAQLGNLERG-----KLLHSYSKELGLDENLSVNNAILDM 55
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394
Y KC ++ A F+R +KDV+ ++M G G +E LF ++ H IEP
Sbjct: 56 YCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITL 115
Query: 395 ARVVDLLARAG 405
V+ A+ G
Sbjct: 116 VGVLSACAQTG 126
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 148/385 (38%), Gaps = 114/385 (29%)
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEW 220
Y + + N V + L+DMY CG V+ + FD LD+ + + +AMI GY H+
Sbjct: 241 YALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDE 300
Query: 221 SAFGSF------DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
A F GL SN + + E + + + +HG++IK GLE L +
Sbjct: 301 KALMLFIEMEAAAGLYSNATT-MSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNA 359
Query: 275 LTAV---------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319
L + ++ WN +I+ Y G + +A+ L + M KS
Sbjct: 360 LIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHE-MQRIEEKS 418
Query: 320 EY-------------------------------------------RN----NVIVNTVLI 332
Y RN V V + L+
Sbjct: 419 TYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALV 478
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG-------------------- 372
DMYAKCG ++LA FD+ ++V+ + + + YG+HG G
Sbjct: 479 DMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEV 538
Query: 373 --------------------EEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAF 411
+EG LFH ++ +HGIEP HYA +VDL+ RAG A+
Sbjct: 539 KPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAY 598
Query: 412 KFIMNMPIEL-RLSVRRALLSAWKI 435
+ MP ++ +LL A +I
Sbjct: 599 GLVNTMPSGFDKVGAWSSLLGACRI 623
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 90/434 (20%), Positives = 166/434 (38%), Gaps = 83/434 (19%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSR 66
+P+ P VLKA + L +G ++H +F G+ G F + L +++ +
Sbjct: 7 SPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGY-------GSFSSVTIDNTLVNMYGK 59
Query: 67 TE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
A+ FD + ++ + + + C E E M+ G E S L+S+
Sbjct: 60 CGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSM 119
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
C N+ R+ + G +G K +R N L+ MY
Sbjct: 120 ALAC---SNLRKRDGLWLGKQIHGCC--------------FRKGHWR--TFSNNALMAMY 160
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-------WSAFGSFDGLLSNEENEY 237
AK G +D A D+D+V ++MI + +E + +G+ + +
Sbjct: 161 AKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVT-F 219
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCRY------------ 281
+ L L+ L GK +H + ++ +E+ L+ + C
Sbjct: 220 ASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVL 279
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLF--------------------PKWMDY------- 314
+ LWNAMI+GYA++ + E+A+ LF P ++
Sbjct: 280 DRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKE 339
Query: 315 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
Y+ K N + LIDMY++ G + + FD D+D+V + + Y + G
Sbjct: 340 GIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICG 399
Query: 371 LGEEGWVLFHHIRK 384
+ +L H +++
Sbjct: 400 RSSDALLLLHEMQR 413
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 123/304 (40%), Gaps = 67/304 (22%)
Query: 142 SGYAKNGYAEEAV-KLFPKWMDYYIGKSEYR----------NNVIVNTVLIDMYAKCGSV 190
SG++ + +A AV K + Y+GK + ++V ++ L++MY KCG +
Sbjct: 4 SGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGL 63
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGY-GLHEWS-AFGSF-----DGLLSNEENEYGTALDC 243
A FDR ++D V +++I EW A +F +G + AL C
Sbjct: 64 GDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALAC 123
Query: 244 SC--DLEFLEQGKIVHGFMIKLG--LELESDLLISLTA------------VCRYQPNVTL 287
S + L GK +HG + G ++ L+++ A V ++
Sbjct: 124 SNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVT 183
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWM--------------------------------DYY 315
WN+MIS +++N EA+ +F + M Y
Sbjct: 184 WNSMISSFSQNERFMEAL-MFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYA 242
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
+ + N V + L+DMY CG V+ + FD LD+ + + +AM GY E+
Sbjct: 243 LRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKA 302
Query: 376 WVLF 379
+LF
Sbjct: 303 LMLF 306
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 143/364 (39%), Gaps = 93/364 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MISGYA+NG EA +LF + S R+ V T ++ Y + G +D A F
Sbjct: 239 NTMISGYAQNGELLEAQRLFEE--------SPVRD-VFTWTAMVSGYVQNGMLDEARRVF 289
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D +K+ V +A+I GY ++ E A+ C ++
Sbjct: 290 DGMPEKNSVSWNAIIAGY----------VQCKRMDQARELFEAMPCQ---NVSSWNTMIT 336
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
G+ + + + Q + W A+I+GYA++GY EEA+ LF
Sbjct: 337 GYAQNGDIAQARNFFDRMP-----QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 391
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
K + + K+ + V L+ MY KCG++D A +
Sbjct: 392 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIV 451
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------ 389
F+ +K+VV + M GY HG G+E +LF ++K GI P
Sbjct: 452 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 511
Query: 390 ------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HY ++DLL RAG + A + NMP E + ALL
Sbjct: 512 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 571
Query: 432 AWKI 435
A +I
Sbjct: 572 ASRI 575
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 118/273 (43%), Gaps = 53/273 (19%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
NAM+SGYA+NGY +EA ++F + +N++ N +L Y + G ++ A F
Sbjct: 146 NAMLSGYAQNGYVKEAKEIFDEM--------PCKNSISWNGMLA-AYVQNGRIEDARRLF 196
Query: 198 DRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255
+ D +++ + M+ GY A G FD + +E + T + + + G++
Sbjct: 197 ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISG-----YAQNGEL 251
Query: 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------ 309
LE+ L + V +V W AM+SGY +NG +EA ++F
Sbjct: 252 -----------LEAQRLFEESPV----RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN 296
Query: 310 --KWMDYYIGKSEYR--------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
W G + + NV +I YA+ G + A FFDR
Sbjct: 297 SVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQ 356
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
+D + +A+ GY G GEE LF +++ G
Sbjct: 357 RDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 389
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ +V WNAM+SGYA+NGY +EA ++F + +N++ N +L Y + G +
Sbjct: 139 ERDVVSWNAMLSGYAQNGYVKEAKEIFDEM--------PCKNSISWNGMLA-AYVQNGRI 189
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGY 366
+ A F+ D +++ + M GY
Sbjct: 190 EDARRLFESKADWELISWNCMMGGY 214
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------ 130
+ + L ++ LE GK VHG ++K GLE + L+ + C
Sbjct: 397 FTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 456
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF 157
+ V N MI+GYA++G+ +EA+ LF
Sbjct: 457 EKEVVSWNTMIAGYARHGFGKEALMLF 483
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 159/386 (41%), Gaps = 87/386 (22%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 136
GLL N C+ F ++G+ +HG ++KLG +L+ + +
Sbjct: 129 GLLPNSYTFPFVLKSCAKSKAF-KEGQQIHGHVLKLGCDLD----------------LYV 171
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
++IS Y +NG E+A K+F KS +R+ V+ T LI YA G ++ A
Sbjct: 172 HTSLISMYVQNGRLEDAHKVF--------DKSPHRD-VVSYTALIKGYASRGYIENAQKL 222
Query: 197 FDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFL 250
FD KDVV +AMI GY + A F ++ +E+ T + +
Sbjct: 223 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 282
Query: 251 EQGKIVH------GFMIKLGLELESDLLISLTAVC-------------RYQPNVTLWNAM 291
E G+ VH GF L + + LI L + C Y+ +V WN +
Sbjct: 283 ELGRQVHLWIDDHGFGSNLKI---VNALIDLYSKCGELETACGLFERLPYK-DVISWNTL 338
Query: 292 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK--S 319
I GY +EA+ LF +W+ YI K
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
N + T LIDMYAKCG ++ A F+ L K + +AM G+ +HG + + LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 380 HHIRKHGIEPRHQHYARVVDLLARAG 405
+RK GI+P + ++ + +G
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSG 484
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 133/345 (38%), Gaps = 121/345 (35%)
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
+ + + R+++++N L+DMYAKCG A FD + VV ++++ GY
Sbjct: 35 HMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGY------- 87
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
+ N +E ++V M+ +
Sbjct: 88 --------AKSAN--------------VEDAQVVFSQMV--------------------E 105
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPK------WMDYY----------------IGKSE 320
NV WN +I+ YA+NG EEA++LF + W +Y +G+
Sbjct: 106 KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQA 165
Query: 321 Y--------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ ++V V L+DMY K GS+D F+R +D V +AM VGY
Sbjct: 166 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGY 225
Query: 367 -----------------------------------GLHGLGEEGWVLFHHIRK-HGIEPR 390
G GL +EG FH + + HGI P
Sbjct: 226 AQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPS 285
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HY +VDLL RAG+ A + I +MP E + +LL A ++
Sbjct: 286 RDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRL 330
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 143/364 (39%), Gaps = 93/364 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MISGYA+NG EA +LF + S R+ V T ++ Y + G +D A F
Sbjct: 158 NTMISGYAQNGELLEAQRLFEE--------SPVRD-VFTWTAMVSGYVQNGMLDEARRVF 208
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D +K+ V +A+I GY ++ E A+ C ++
Sbjct: 209 DGMPEKNSVSWNAIIAGY----------VQCKRMDQARELFEAMPCQ---NVSSWNTMIT 255
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF--------- 308
G+ + + + Q + W A+I+GYA++GY EEA+ LF
Sbjct: 256 GYAQNGDIAQARNFFDRMP-----QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 310
Query: 309 ---------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
K + + K+ + V L+ MY KCG++D A +
Sbjct: 311 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIV 370
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP------------------ 389
F+ +K+VV + M GY HG G+E +LF ++K GI P
Sbjct: 371 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 430
Query: 390 ------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+HY ++DLL RAG + A + NMP E + ALL
Sbjct: 431 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 490
Query: 432 AWKI 435
A +I
Sbjct: 491 ASRI 494
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 121/280 (43%), Gaps = 53/280 (18%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ +V NAM+SGYA+NGY +EA ++F + +N++ N +L Y + G +
Sbjct: 58 ERDVVSWNAMLSGYAQNGYVKEAKEIFDEM--------PCKNSISWNGMLA-AYVQNGRI 108
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLE 248
+ A F+ D +++ + M+ GY A G FD + +E + T +
Sbjct: 109 EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISG----- 163
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
+ + G++ LE+ L + V +V W AM+SGY +NG +EA ++F
Sbjct: 164 YAQNGEL-----------LEAQRLFEESPV----RDVFTWTAMVSGYVQNGMLDEARRVF 208
Query: 309 P--------KWMDYYIGKSEYR--------------NNVIVNTVLIDMYAKCGSVDLAPM 346
W G + + NV +I YA+ G + A
Sbjct: 209 DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARN 268
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386
FFDR +D + +A+ GY G GEE LF +++ G
Sbjct: 269 FFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------ 130
+ + L ++ LE GK VHG ++K GLE + L+ + C
Sbjct: 316 FTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 375
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF 157
+ V N MI+GYA++G+ +EA+ LF
Sbjct: 376 EKEVVSWNTMIAGYARHGFGKEALMLF 402
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 133/331 (40%), Gaps = 90/331 (27%)
Query: 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199
++ +K+G+A F K + + KS ++ +N LI +Y+ G +LA FD+
Sbjct: 107 VLKACSKSGHAR-----FGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDK 161
Query: 200 TLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGF 259
D+DVV W++ DG + N+ L H
Sbjct: 162 MPDRDVV------------SWTSI--IDGFVDNDRPIEAIRL-------------FTH-- 192
Query: 260 MIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319
MI+ G+E PN +++ A G ++ ++ +
Sbjct: 193 MIENGIE----------------PNEVTVASVLRACADTGALNTGERIHS-----FVKEK 231
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------- 372
+ +N V+T LIDMYAKCG +D A FD TL+KDV + +A+ G HGL
Sbjct: 232 NFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFF 291
Query: 373 ----------------------------EEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404
EG + F ++KH I+P QHY VVD+L RA
Sbjct: 292 ENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRA 351
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G A +FI MPIE + R L+ KI
Sbjct: 352 GRLKDAEEFIRKMPIEPDAVLWRTLIWGCKI 382
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 28/217 (12%)
Query: 2 QVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
VA P+ T P VLKAC G ++HG +F G DR I L
Sbjct: 93 SVAVPRPDHFTYPFVLKACSKSGHARFGKQIHGLVFKSGVGS--------DRYINNA-LI 143
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
HL+S +S E N D D + + I+ GF + +E+ L
Sbjct: 144 HLYS-------------VSGEPNLAYKVFDKMPDRDVVSWTSIIDGF-VDNDRPIEAIRL 189
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
+ +PN +++ A G ++ ++ + + +N V+T LI
Sbjct: 190 FTHMIENGIEPNEVTVASVLRACADTGALNTGERIHS-----FVKEKNFSSNANVSTALI 244
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
DMYAKCG +D A FD TL+KDV + +A+I G H
Sbjct: 245 DMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASH 281
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 99/420 (23%), Positives = 172/420 (40%), Gaps = 103/420 (24%)
Query: 99 LEQGKIVHGFMIKLGLEL-------------ESDLLISLTAVCRYQPN--VTLRNAMISG 143
+ +G+ VH F++K GLE E L+ T V P+ N MISG
Sbjct: 124 VREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISG 183
Query: 144 YAKNGYAEEAVKLFPK-WMD----------------------YYIGK-------SEYRNN 173
Y + EEAV ++ + W + +GK SE
Sbjct: 184 YVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLT 243
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
I+ L+DMY KCG V +A FD K+V ++M+ GY ++ +
Sbjct: 244 TIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGY-------------VICGQ 290
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
++ + S + + +++G+ ++ E+ L + +P+ + +++
Sbjct: 291 LDQARNLFERSPSRDIVLWTAMINGY-VQFNRFEETIALFGEMQIRGVKPDKFIVVTLLT 349
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
G A++G E+ KW+ YI ++ + + +V T LI+MYAKCG ++ + F+ +
Sbjct: 350 GCAQSGALEQG-----KWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKE 404
Query: 354 KDVVMRSAMTVGYGLH-----------------------------------GLGEEGWVL 378
KD +++ G ++ GL EEG L
Sbjct: 405 KDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKL 464
Query: 379 FHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI---ELRLSVRRALLSAWK 434
FH + + IEP +HY +DLL RAG A + + +P E+ + + ALLSA +
Sbjct: 465 FHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACR 524
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 131/334 (39%), Gaps = 66/334 (19%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPK------WMDYY--------------IGKSE 169
+ P++ + N MI + K+G A+ LF + W D Y + + E
Sbjct: 69 HDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGE 128
Query: 170 YRNNVIVNTVL----------IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---- 215
+ +V T L +DMYA+ G V+ F+ D+D V + MI GY
Sbjct: 129 KVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCK 188
Query: 216 ----GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
+ + + NE T C+ L LE GK +H ++ E DL
Sbjct: 189 RFEEAVDVYRRMWTESNEKPNEATVVSTLSACAV-LRNLELGKEIHDYIAS-----ELDL 242
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331
+ NA++ Y K G+ A ++F + NV T +
Sbjct: 243 ------------TTIMGNALLDMYCKCGHVSVAREIF---------DAMTVKNVNCWTSM 281
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391
+ Y CG +D A F+R+ +D+V+ +AM GY EE LF ++ G++P
Sbjct: 282 VTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDK 341
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSV 425
++ A++G K+I N E R+ V
Sbjct: 342 FIVVTLLTGCAQSGALEQG-KWIHNYIDENRIKV 374
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 130/325 (40%), Gaps = 51/325 (15%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T L AC L +L +G +H I S L + + L D ++ H+
Sbjct: 208 PNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALLD---MYCKCGHVSVAR 264
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK----------------IVHGFMIK 111
E FD + N + + + L+Q + +++G+ ++
Sbjct: 265 EI-----FDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGY-VQ 318
Query: 112 LGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 171
E+ L + +P+ + +++G A++G E+ KW+ YI ++ +
Sbjct: 319 FNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQG-----KWIHNYIDENRIK 373
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL 229
+ +V T LI+MYAKCG ++ + F+ +KD +++I G ++ A F +
Sbjct: 374 VDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAM 433
Query: 230 ----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
L ++ + L +E+G+ L S++++ +PN+
Sbjct: 434 QTCGLKPDDITFVAVLSACSHAGLVEEGR---------------KLFHSMSSMYHIEPNL 478
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPK 310
+ I + G +EA +L K
Sbjct: 479 EHYGCFIDLLGRAGLLQEAEELVKK 503
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 112/478 (23%), Positives = 183/478 (38%), Gaps = 133/478 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ + P+ T P +LKAC SL + +H + GF + V L
Sbjct: 111 MQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGF---------YGDIFVPNSL 161
Query: 61 YHLWSRTEWSAF-GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 119
+SR + G+ L+ +E + T + G +++ G ELE
Sbjct: 162 IDSYSRCGSAGLDGAMSLFLAMKERDVVT-------------WNSMIGGLVRCG-ELE-- 205
Query: 120 LLISLTAVCRYQPNVTLR-----NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174
C+ + R N M+ GYAK G + A +LF + + N+
Sbjct: 206 ------GACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMP---------QRNI 250
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
+ + ++ Y+K G +D+A + FDR K+VV+ + +I GY
Sbjct: 251 VSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA------------------ 292
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
E G F+ + ++G M + GL + LIS+ A C
Sbjct: 293 -EKG----------FVREATELYGKMEEAGLRPDDGFLISILAAC--------------- 326
Query: 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA-PMFFDRTLD 353
AE + K + + + +R V IDMYAKCG +D A +F
Sbjct: 327 ------AESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAK 380
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------------------- 382
KDVV ++M G+ +HG GE+ LF +
Sbjct: 381 KDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKY 440
Query: 383 -----RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +GI P+ +HY ++DLL R G+ AF + +MP+E + LL+A ++
Sbjct: 441 FYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRM 498
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 141/359 (39%), Gaps = 91/359 (25%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG 224
K+ Y +V + T LI +Y KC + A FD K+VV +AMI Y + A
Sbjct: 118 KTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALN 177
Query: 225 SFDGLLSN--EENEYGTAL---DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV- 278
F +L + E N + A C L F E G+ +H IK E + SL +
Sbjct: 178 LFVEMLRSDTEPNHFTFATILTSCYGSLGF-ETGRQIHSIAIKRNYESHMFVGSSLLDMY 236
Query: 279 --------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------- 309
C + +V A+ISGYA+ G EEA+KLF
Sbjct: 237 AKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYA 296
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
K + ++ +S + V++ LIDMY+KCG+V A FD ++
Sbjct: 297 SVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER 356
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIR------------------------------- 383
+ +AM VGY HG+ E LF +R
Sbjct: 357 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI 416
Query: 384 -------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K GIEP HY VVDLL RAG AF FI MP ++ +LL + ++
Sbjct: 417 FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRV 475
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 37/213 (17%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFP----------------------------- 158
C + +V A+ISGYA+ G EEA+KLF
Sbjct: 251 CLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNH 310
Query: 159 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
K + ++ +S + V++ LIDMY+KCG+V A FD ++ + +AM+VGY
Sbjct: 311 GKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSK 370
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
H + L EEN+ D L L HG + +GLE+ +++
Sbjct: 371 HGMAREVLELFKLMREENK--VKPDSITYLAVL--SGCSHGQLEDMGLEIFYNMVNGKDG 426
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ +P++ + ++ + G EEA K
Sbjct: 427 I---EPDIGHYGCVVDLLGRAGRVEEAFDFIKK 456
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 146/349 (41%), Gaps = 90/349 (25%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDV-----VMRSAMIVGYGLHEWSAFGSFD--G 228
V+ +DMY K G + LA F+ +++V VM +A+I G L + A+ G
Sbjct: 151 VSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAG 210
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQ--- 282
+ N + C+ + FL G+ HGF++ G +++ S+ ++ CR
Sbjct: 211 GMPNVVSVCAFFNACAGAM-FLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKA 269
Query: 283 ---------PNVTLWNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG--------- 317
N W +MI YA++G E+A+ ++ + D+ +
Sbjct: 270 RAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGL 329
Query: 318 --------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
+S N+ V + L+DMY KCG V+ A F ++++V +AM
Sbjct: 330 LGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMI 389
Query: 364 VGYG------------------------------------LHGLGEEGWVLFHHIR-KHG 386
GY GL ++G+ LF +R + G
Sbjct: 390 GGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFG 449
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+EPR +HYA VVDLL RAG A++ I MP+ +SV ALL A K+
Sbjct: 450 VEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKM 498
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 122/486 (25%), Positives = 190/486 (39%), Gaps = 125/486 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVCYL----- 46
+ PN T P VLKAC A +G VH Q F LG ++ C L
Sbjct: 130 ILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSAR 189
Query: 47 --FDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTA---------LD 91
FD + +RT+V ++ Y R+E + L+ E E G L
Sbjct: 190 RVFDDISERTLVSWNSMINGYSKMGRSEEAV------LMFREMQEVGLEPDVFTLVGLLS 243
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAE 151
S + G+ VH M+ G+E++S + NA++ YAK G +
Sbjct: 244 VSTKHGNFDLGRFVHLHMVVTGIEIDS----------------IVTNALMDMYAKCGNLK 287
Query: 152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
A +F + +D +V+ T +I+ YA G +D A FF++ K+VV +++
Sbjct: 288 CAKSVFDQMLD---------KDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSI 338
Query: 212 I---VGYGLHEWSAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
I V GL+ A F G+++N+ CS + L GK H ++
Sbjct: 339 IWCHVQEGLYA-EAVDLFYRMCDSGVMANDTTLVAILSSCS-HMGDLALGKQAHSYIFDN 396
Query: 264 GLELESDL---LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF 308
+ L + L +I + A C + N WN +I A +GY +EA+++F
Sbjct: 397 NITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMF 456
Query: 309 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
K + E I T L+ + G VD +F+ M + +
Sbjct: 457 EKMQASGVCPDE-----ITFTGLLSACSHSGLVDTGQHYFE-----------IMNLTF-- 498
Query: 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRA 428
GI P +HYA +VDLL R G A I MP++ + V A
Sbjct: 499 -----------------GISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSA 541
Query: 429 LLSAWK 434
LL A +
Sbjct: 542 LLGACR 547
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 59/138 (42%), Gaps = 30/138 (21%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPK--------------------------WMDYY 315
QPN ++N +I GY+ + +++ L+ + W+
Sbjct: 96 QPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVC 155
Query: 316 IGKSEYR----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ ++ ++ V ++++Y CG + A FD ++ +V ++M GY G
Sbjct: 156 VHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGR 215
Query: 372 GEEGWVLFHHIRKHGIEP 389
EE ++F +++ G+EP
Sbjct: 216 SEEAVLMFREMQEVGLEP 233
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 119/494 (24%), Positives = 196/494 (39%), Gaps = 132/494 (26%)
Query: 71 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLIS 123
+ GSF G+L++ + N + + L L L G+ +HG++I++GL+ + + L++
Sbjct: 92 SLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMN 151
Query: 124 LTAVCRY-------------------QPNVTLRNAMISGYAKNGYAEEAVKLFP-----K 159
+ + R+ + ++R A + G ++ F +
Sbjct: 152 MYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVL-VGNQGRKVSDIEAFNYDVSCR 210
Query: 160 WMDY--------YIGKSEYRNNVIVNT-VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
++ Y +SEYR N I + SVD F+ +KD+V +
Sbjct: 211 SREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNT 270
Query: 211 MIVG------YG--LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262
+I G YG L G + L + + L + + +GK +HG I+
Sbjct: 271 IIAGNARNGLYGETLTMVREMGGAN--LKPDSFTLSSVLPLIAENVDISKGKEIHGCSIR 328
Query: 263 LGLELE---SDLLISLTAVC-----RYQPNVTL-------WNAMISGYAKNGYAEEAVKL 307
GL+ E + LI + A C Y+ L WN++I+G +NG +E +K
Sbjct: 329 QGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKF 388
Query: 308 F---------PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAK 337
F PK + YI ++ + N+ + + L+DMYAK
Sbjct: 389 FRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAK 448
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------ 391
CG++ A FDR +D+V +AM +G LHG + LF ++ GIEP +
Sbjct: 449 CGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAV 508
Query: 392 ------------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
+HYA V DLL RAG A+ FI MPI
Sbjct: 509 LTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGP 568
Query: 422 RLSVRRALLSAWKI 435
SV LLSA ++
Sbjct: 569 TGSVWATLLSACRV 582
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 113/270 (41%), Gaps = 57/270 (21%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
K + N+ +N LI MYAKC +D A FD L++D+V ++MI GY F
Sbjct: 155 KMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGY---TKMGFARE 211
Query: 227 DGLLSNEENEYG---------TALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLIS 274
L E E G + L DL L GK V + +EL S LI
Sbjct: 212 AVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTASALID 271
Query: 275 LTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
+ C + ++ WNAMI+GYA+NG ++EA+ LF
Sbjct: 272 MYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGITPNEIT 331
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KW++ Y + +++V V + L+DMYAKCGS+D A F+
Sbjct: 332 MVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDNALRVFENMP 391
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
K+ V +AM HG E LF +
Sbjct: 392 HKNEVSWNAMISALAFHGRAREALSLFSRM 421
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 46/208 (22%)
Query: 244 SC-DLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR------------YQPNVTL 287
SC +L L G+I H ++K+G +S + LI++ A C + ++
Sbjct: 136 SCANLVALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVS 195
Query: 288 WNAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIG 317
WN+MISGY K G+A EAV+LF KW++ IG
Sbjct: 196 WNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIG 255
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
+ N + LIDMY KCG + A FD +KD+V +AM GY +G +E
Sbjct: 256 DKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMT 315
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAG 405
LF+ +R+ GI P V+ A G
Sbjct: 316 LFNVMREAGITPNEITMVVVLSACASIG 343
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 131/314 (41%), Gaps = 76/314 (24%)
Query: 93 SC-DLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR------------YQPNVTL 136
SC +L L G+I H ++K+G +S + LI++ A C + ++
Sbjct: 136 SCANLVALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVS 195
Query: 137 RNAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIG 166
N+MISGY K G+A EAV+LF KW++ IG
Sbjct: 196 WNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIG 255
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
+ N + LIDMY KCG + A FD +KD+V +AMI GY + S A
Sbjct: 256 DKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMT 315
Query: 225 SFD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLT 276
F+ G+ NE L + L+ GK V + + GL+ + + L+ +
Sbjct: 316 LFNVMREAGITPNEITMV-VVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMY 374
Query: 277 AVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324
A C N WNAMIS A +G A EA+ LF + ++ S R N
Sbjct: 375 AKCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFSRMLN----GSTVRPN 430
Query: 325 VIVNTVLIDMYAKC 338
I I ++A C
Sbjct: 431 DI---TFIGVFAAC 441
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 129/287 (44%), Gaps = 51/287 (17%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLHEWS 221
K+ Y +V V + L+DMYAKCG + A FD +++VV S MI GY G+ +
Sbjct: 154 KTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALT 213
Query: 222 AFGSFDGLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F L+ + + + + + FLE GK++HG +K+ + S
Sbjct: 214 LFK--QALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSS--------- 262
Query: 279 CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK--------WMDYYIGKSEYRNNVIVNTV 330
+ +A+IS Y+K G E A ++F + W I +++ + V
Sbjct: 263 -------FVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRV--- 312
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH--GLGEEGWVLFHHIRKHGIE 388
++ + G+V + P F ++V Y GL E+G F +R +GIE
Sbjct: 313 -FGLFEEMGNVGMKPNFI-----------XFLSVLYACSHAGLVEKGREYFSLMRDYGIE 360
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
P +HYA +VDLL RAG A I MP+ SV ALL+ +I
Sbjct: 361 PETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRI 407
>gi|356519676|ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 728
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 154/337 (45%), Gaps = 52/337 (15%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ N N MI GYA +G E++ +LF K N+ +I +Y+K G +
Sbjct: 336 ETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSP---------ENLTSLNTMISVYSKNGEL 386
Query: 191 DLAPMFFDRTL-DKDVVMRSAMIVGYGLH-----EWSAFGSFDGLLSNEENEYGTAL--D 242
D A FD+T +++ V ++M+ GY ++ + + + L + + L
Sbjct: 387 DEAVKLFDKTKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRA 446
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
CSC F QG+++H +IK +Q NV + A++ Y+K G+
Sbjct: 447 CSCLCSF-RQGQLLHAHLIKTP----------------FQVNVYVGTALVDFYSKCGHLA 489
Query: 303 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
EA + F S + NV T LI+ YA G A + F L + +V +A
Sbjct: 490 EAQRSFI---------SIFSPNVAAWTALINGYAYHGLGSEAILLFRSMLHQGIVPNAAT 540
Query: 363 TVGY----GLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
VG GL EG +FH +++ +G+ P +HY VVDLL R+G+ A +FI+ M
Sbjct: 541 FVGVLSACNHAGLVCEGLRIFHSMQRCYGVTPTIEHYTCVVDLLGRSGHLKEAEEFIIKM 600
Query: 418 PIELRLSVRRALLSA---WKIPMQQWENMLQTIRGID 451
PIE + ALL+A WK M+ E + + +D
Sbjct: 601 PIEADGIIWGALLNASWFWK-DMEVGERAAEKLFSLD 636
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 129/321 (40%), Gaps = 76/321 (23%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE---WSAFGSFDGL 229
N ++ ++++ Y K +D A F++ +DVV + +I GY E A F +
Sbjct: 172 NQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCM 231
Query: 230 LSNEE---NEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---C 279
+ E NE+ LDC L L GK+VHG IK GL+ ++ + ++T C
Sbjct: 232 RRSSEVLPNEF--TLDCVVRVCARLGVLRAGKVVHGLCIKGGLDFDNSIGGAVTEFYCGC 289
Query: 280 R--------------------------------------------YQPNVTLWNAMISGY 295
+ N +N MI GY
Sbjct: 290 EAIDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAELVFYELRETNPVSYNLMIKGY 349
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DK 354
A +G E++ +LF K N+ +I +Y+K G +D A FD+T ++
Sbjct: 350 AMSGQFEKSKRLFEKMSP---------ENLTSLNTMISVYSKNGELDEAVKLFDKTKGER 400
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA---RVVDLLA--RAGYSNH 409
+ V ++M GY ++G +E L+ +R+ ++ ++ R L R G H
Sbjct: 401 NYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACSCLCSFRQGQLLH 460
Query: 410 AFKFIMNMPIELRLSVRRALL 430
A ++ P ++ + V AL+
Sbjct: 461 A--HLIKTPFQVNVYVGTALV 479
>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g35030, mitochondrial; Flags: Precursor
gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 143/374 (38%), Gaps = 96/374 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ N+ N+M+ + G +EA+ LF + R +V+ T ++D AK G V
Sbjct: 168 ERNIVSWNSMVKALVQRGRIDEAMNLFERM---------PRRDVVSWTAMVDGLAKNGKV 218
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
D A FD +++++ +AMI GY + N +E + +F
Sbjct: 219 DEARRLFDCMPERNIISWNAMITGYAQN-------------NRIDEADQLFQVMPERDFA 265
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ GF+ + L + + NV W MI+GY +N EEA+ +F K
Sbjct: 266 SWNTMITGFIRNREMNKACGLFDRMP-----EKNVISWTTMITGYVENKENEEALNVFSK 320
Query: 311 WM-------------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ I KS ++ N IV + L++MY+K G
Sbjct: 321 MLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSG 380
Query: 340 SVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-------- 389
+ A FD L +D++ ++M Y HG G+E +++ +RKHG +P
Sbjct: 381 ELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNL 440
Query: 390 ----------------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
R +HY +VDL RAG FI L
Sbjct: 441 LFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARL 500
Query: 422 RLSVRRALLSAWKI 435
S A+LSA +
Sbjct: 501 SRSFYGAILSACNV 514
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 45/280 (16%)
Query: 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199
+I+GY K G EA +LF + + R NV+ T ++ Y + + +A M F
Sbjct: 83 VITGYIKLGDMREARELF--------DRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQE 134
Query: 200 TLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVH 257
+++VV + MI GY + G D L +E E S +++G+I
Sbjct: 135 MPERNVVSWNTMIDGY-----AQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDE 189
Query: 258 GFMIKLGLELESDLLISLTAV------------------CRYQPNVTLWNAMISGYAKNG 299
+ L + ++S TA+ C + N+ WNAMI+GYA+N
Sbjct: 190 A--MNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNN 247
Query: 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+EA +LF + R+ NT +I + + ++ A FDR +K+V+
Sbjct: 248 RIDEADQLFQVMPE--------RDFASWNT-MITGFIRNREMNKACGLFDRMPEKNVISW 298
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVV 398
+ M GY + EE +F + + G ++P Y ++
Sbjct: 299 TTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSIL 338
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ NV W AM+SGY ++ A LF + + NV+ +ID YA+ G +
Sbjct: 106 RKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPE---------RNVVSWNTMIDGYAQSGRI 156
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
D A FD ++++V ++M G +E LF + + + + +VD L
Sbjct: 157 DKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDV----VSWTAMVDGL 212
Query: 402 ARAGYSNHAFKFIMNMP 418
A+ G + A + MP
Sbjct: 213 AKNGKVDEARRLFDCMP 229
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ +V W +I+GY K G EA +LF + + R NV+ T ++ Y + +
Sbjct: 74 ERDVVTWTHVITGYIKLGDMREARELF--------DRVDSRKNVVTWTAMVSGYLRSKQL 125
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
+A M F +++VV + M GY G ++ LF + + I + +V L
Sbjct: 126 SIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI----VSWNSMVKAL 181
Query: 402 ARAGYSNHAFKFIMNMP 418
+ G + A MP
Sbjct: 182 VQRGRIDEAMNLFERMP 198
>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 124/500 (24%), Positives = 195/500 (39%), Gaps = 146/500 (29%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG----LELESDLLISLTAVC--- 128
D N G L C +L L G+ +HG ++K G L+++S +L S+ C
Sbjct: 208 DSQKPNARTLEGGFLACG-NLGDLVSGRCLHGLVVKNGIGCLLDIQSSVL-SMYCKCGVP 265
Query: 129 --RYQPNVTLRN-------AMISGYAKNGYAEEAVKLF---------PKWM--------- 161
YQ + N +MI YA+ G + V+ F P M
Sbjct: 266 REAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGF 325
Query: 162 ----DYYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 209
D Y GK+ Y + +V+ L+ MY K G + A F R+ + +
Sbjct: 326 GNSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQRS-QGSIEYWN 384
Query: 210 AMIVGYG-----------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 258
MIVGYG E G + +E +A+ L + G+ +H
Sbjct: 385 FMIVGYGRIGKNVKCIQLFREMQYLG-----IRSESVGIVSAIASCGQLGEINLGRSIHC 439
Query: 259 FMIKLGLELES----DLLISLTAVC-----------RYQPNVTLWNAMISGYAKNGYAEE 303
+IK G E+ + LI + C R + +V LWNA+IS + + EE
Sbjct: 440 NVIK-GFVDETISVTNSLIEMYGKCDKMNVSWRIFNRSERDVILWNALISAHIHVKHYEE 498
Query: 304 AVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVLID 333
A+ LF + + YI + ++ N+ + T L+D
Sbjct: 499 AISLFDIMIMEDQNPNTATLVVVLSACSHLAFLEKGERLHRYINEKGFKLNLPLGTALVD 558
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG----------------------- 370
MYAKCG ++ + FD ++KDV+ +AM GYG++G
Sbjct: 559 MYAKCGQLEKSREVFDSMMEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEIT 618
Query: 371 ------------LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
L EEG +F ++ + ++P +HY +VDLL R+ A + +++MP
Sbjct: 619 FLSLLSACAHAGLVEEGKNVFAKMQSYSVKPNLKHYTCMVDLLGRSCNLEEAEELVLSMP 678
Query: 419 IELRLSVRRALLSAWKIPMQ 438
I V ALLSA K Q
Sbjct: 679 IPPDGGVWGALLSACKTHNQ 698
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 58/268 (21%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------------ 158
R + +V L NA+IS + + EEA+ LF
Sbjct: 475 RSERDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVVLSACSHLAFLEKG 534
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ + YI + ++ N+ + T L+DMYAKCG ++ + FD ++KDV+ +AMI GYG++
Sbjct: 535 ERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMISGYGMN 594
Query: 219 EW--SAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIV----HGFMIKLGLELE 268
+ SA F+ + + E + + L +E+GK V + +K L+
Sbjct: 595 GYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNVFAKMQSYSVKPNLKHY 654
Query: 269 SDLLISLTAVCRYQ------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316
+ ++ L C + P+ +W A++S + E +++ +D
Sbjct: 655 TCMVDLLGRSCNLEEAEELVLSMPIPPDGGVWGALLSACKTHNQIEMGIRIGKNAID--- 711
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
SE N+ ++ +MY+ G D A
Sbjct: 712 --SEPENDGYY-IMVANMYSSIGRWDEA 736
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 110/275 (40%), Gaps = 59/275 (21%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG----- 224
+ N V + + +Y++C ++ A FD +DVV +A+++GY + S G
Sbjct: 141 FPENSAVGSSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECIS 200
Query: 225 -----SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG----LELESDLLISL 275
D N G L C +L L G+ +HG ++K G L+++S +L S+
Sbjct: 201 EMYRVGDDSQKPNARTLEGGFLACG-NLGDLVSGRCLHGLVVKNGIGCLLDIQSSVL-SM 258
Query: 276 TAVC-----RYQP-------NVTLWNAMISGYAKNGYAEEAVKLF---------PKWM-- 312
C YQ ++ W +MI YA+ G + V+ F P M
Sbjct: 259 YCKCGVPREAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVI 318
Query: 313 -----------DYYIGKS--------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
D Y GK+ Y + +V+ L+ MY K G + A F R+
Sbjct: 319 GCILSGFGNSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQRS-Q 377
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+ + M VGYG G + LF ++ GI
Sbjct: 378 GSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIR 412
>gi|297830768|ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329106|gb|EFH59525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 564
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 163/396 (41%), Gaps = 119/396 (30%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-------------------------- 171
AMIS +++ GY +A+ LF + + +++
Sbjct: 82 TAMISRFSRCGYHRDALLLFKQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQIQGCLEK 141
Query: 172 ----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGS 225
N+IV + L+ +YA+CG ++ A + FD ++D+V ++MI GY + ++F
Sbjct: 142 GKCAGNLIVRSALLSLYARCGKMEDARLQFDSMKERDLVSWNSMIDGYTTNACVDTSFSL 201
Query: 226 FDGLLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT-AVCR 280
F + + + +G+ L S ++ LE +HG IKLG S L+ SL A +
Sbjct: 202 FQLMFAEGKKPDCFTFGSLLRASIVVKCLEPVGQLHGLAIKLGFGRSSALIRSLVDAYVK 261
Query: 281 YQPNVTLW--------------NAMISGYAK-NGYAEEAVKLFPKW------MD------ 313
W A+I+G+A+ N +A +F + MD
Sbjct: 262 CGSIANAWKLHEDTTKRDLISCTALITGFAQQNICTSDAFDIFNEMILMKTKMDEVVVSS 321
Query: 314 -------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
+ + S+ R ++ + LIDMYAK G ++ A + F+ +K
Sbjct: 322 MLKICTTIASVTVGRQIHGFALKSSQIRFDIALGNSLIDMYAKSGDIEDAVLAFEEMKEK 381
Query: 355 DVVMRSAMTVGYGLHGLGEE-----------------------------------GWVLF 379
DV +++ GYG HG E+ GW +F
Sbjct: 382 DVRSWTSLIAGYGRHGNFEKAIDLYNRMEHEGIKPNDVTFLSLLSACSHTGQTELGWKIF 441
Query: 380 HH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
+ I KHGI+ R +H++ ++D+LAR+GY A++ I
Sbjct: 442 NKMINKHGIKAREEHFSCIIDMLARSGYLEEAYELI 477
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 103/254 (40%), Gaps = 53/254 (20%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSF 226
+ +N+ +N +LID+Y K G V A FDR +DVV +AMI + G H A F
Sbjct: 43 FGSNLQLNDMLIDLYLKQGDVKHARKLFDRIPKRDVVSWTAMISRFSRCGYHR-DALLLF 101
Query: 227 DGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVC 279
+ + + YG+ L DL L++G + G + K G + L+SL A C
Sbjct: 102 KQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQIQGCLEKGKCAGNLIVRSALLSLYARC 161
Query: 280 RYQPNVTL------------WNAMISGYAKNGYAEEAVKLFP------KWMDYYIGKSEY 321
+ L WN+MI GY N + + LF K D + S
Sbjct: 162 GKMEDARLQFDSMKERDLVSWNSMIDGYTTNACVDTSFSLFQLMFAEGKKPDCFTFGSLL 221
Query: 322 RNNVIVNTV------------------------LIDMYAKCGSVDLAPMFFDRTLDKDVV 357
R +++V + L+D Y KCGS+ A + T +D++
Sbjct: 222 RASIVVKCLEPVGQLHGLAIKLGFGRSSALIRSLVDAYVKCGSIANAWKLHEDTTKRDLI 281
Query: 358 MRSAMTVGYGLHGL 371
+A+ G+ +
Sbjct: 282 SCTALITGFAQQNI 295
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ +N+ +N +LID+Y K G V A FDR +DVV +AM + G + +LF
Sbjct: 43 FGSNLQLNDMLIDLYLKQGDVKHARKLFDRIPKRDVVSWTAMISRFSRCGYHRDALLLFK 102
Query: 381 HIRKHGIEPRHQHYARVV 398
+ + + Y V+
Sbjct: 103 QMHRQDVRANQFTYGSVL 120
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 112/455 (24%), Positives = 185/455 (40%), Gaps = 120/455 (26%)
Query: 50 LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 109
+F + F+D + L+ R + S + LS++ CS +L L++G+IVHG
Sbjct: 78 IFSKNSQFIDTFSLFYRMKQSEYA-----LSDKYTYPLLIKVCSNELR-LKEGEIVHGSA 131
Query: 110 IKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 169
I+ G+ SD +V + +++IS Y K A K+F + +
Sbjct: 132 IRCGV---SD-------------DVYVGSSLISFYGKCKEILSARKVFDEIPE------- 168
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
NV+ T ++ YA G ++ A F+R ++++ +AMI G G G
Sbjct: 169 --RNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKA---------GD 217
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--NVTL 287
LS + E +E+ + MI G D+ S A+ P +V
Sbjct: 218 LSGARKVFD---------EMVERNVVSFTVMID-GYAKVGDM-ASARALFDEAPEKDVVA 266
Query: 288 WNAMISGYAKNGYAEEAVKLF------------------------------PKWMDYYIG 317
W+A+ISGY++N EAVK+F KW+D Y+
Sbjct: 267 WSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLS 326
Query: 318 KSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG---- 372
++ V LIDM+AKCG+++ A F +D++ ++ G +HG G
Sbjct: 327 QTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAV 386
Query: 373 -------------------------------EEGWVLFHHIR-KHGIEPRHQHYARVVDL 400
E+GW F ++ K+ + P HYA +VDL
Sbjct: 387 ELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDL 446
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
L+RAG A+ + +MP++ ALL A K+
Sbjct: 447 LSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKL 481
>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Cucumis sativus]
gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Cucumis sativus]
Length = 712
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 106/437 (24%), Positives = 177/437 (40%), Gaps = 94/437 (21%)
Query: 42 LVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 101
+ C +FD + +R +V W+ +GLL E+G C +
Sbjct: 130 MACNMFDKMSERNVV-----------SWTTI--INGLL-----EFGRVEVAECLFRVMPT 171
Query: 102 ------GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVK 155
+VHGF +E +L + NV ++I G NG + EA+
Sbjct: 172 KDVTAWNSMVHGFFSNGRVEDAIELFEKMP-----NRNVISWTSVIGGLDHNGRSFEALV 226
Query: 156 LFPKWMDYY-----------------------------IGKSEYRNNVIVNTVLIDMYAK 186
+F K + + I K+ Y N ++ LI YA
Sbjct: 227 VFHKMLASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYAN 286
Query: 187 CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLS----NEENEYGTA 240
C +D A F+ + ++VV+ +A++ GYGL+ A F G++ ++ +A
Sbjct: 287 CKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSA 346
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300
L+ C LE +++G+ VH KLGLE SD+ +S N+++ Y K G+
Sbjct: 347 LNSCCGLEAVDRGREVHAVAHKLGLE--SDIFVS--------------NSLVVMYTKCGH 390
Query: 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG----SVDLAPMFFDRTLDKDV 356
+ + +F + R NV+ +I A+ G ++ L +D D
Sbjct: 391 INDGIAVFTRM---------SRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDE 441
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
+ + + G G+ +G F H K+ GIE ++HY+ +VDLL R G A I
Sbjct: 442 ITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIH 501
Query: 416 NMPIELRLSVRRALLSA 432
MP + V ALLS+
Sbjct: 502 IMPGKANYMVWLALLSS 518
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 107/433 (24%), Positives = 180/433 (41%), Gaps = 81/433 (18%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
+ N T +LK AL S+ G VHG + LGF G ++ + L ++ +
Sbjct: 196 IQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGF-------GSYNTVVNSLISFYFKT 248
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
R +A+ FD L + + + + + + + E+G V M+ LG+ + L+++
Sbjct: 249 RKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVL 308
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
A C N L G + +A +A +D + VNT L+DMY+
Sbjct: 309 AACANSGNFPL------GRVLHAFAIKA------QLDQRM--------TFVNT-LLDMYS 347
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG-------SFDGLLSNEENEYG 238
KCG ++ A F + ++ VV +++I GY S G +G+ +
Sbjct: 348 KCGDLNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTA 407
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRYQPNVTL-------- 287
C+C LE GK VH ++ + ++ + + L+ + A C + L
Sbjct: 408 VLHACACSGS-LEIGKDVHDYVKENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNK 466
Query: 288 ----WNAMISGYAKNGYAEEAVKLF-----------------------------PKWMDY 314
WN MI GY+KNG E + LF + +
Sbjct: 467 DIVSWNTMIGGYSKNGRPNETLHLFVAMVQELKPDGRTMACILPACASLAALDRGREIHG 526
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG-YGLHGLGE 373
YI ++ +++ V LIDMYAKCG++ LA +FFD KD++ + M G G+ +
Sbjct: 527 YIQRNGCFDDLHVANALIDMYAKCGALALARLFFDMIPVKDLISWTVMIAGDIDERGICK 586
Query: 374 EGWVLFHHIRKHG 386
G LF R +G
Sbjct: 587 IGRALFPWERSNG 599
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 55/284 (19%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAF---GSFDG 228
++ T L+ MY CG + + FD+ ++ V + + M+ GY G E S + D
Sbjct: 135 LLGTKLVFMYVNCGDIREGRVIFDKIANEKVFLWNLMLSGYAKIGAFEESVYLFRKMLDL 194
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV--------CR 280
+ + L C L +++G+ VHG+++KLG + ++ SL +
Sbjct: 195 GIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGFGSYNTVVNSLISFYFKTRKIEAA 254
Query: 281 YQ-------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG---------------- 317
Y+ ++ WN+MISG N E+ +++F + + Y+G
Sbjct: 255 YEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEML--YLGVSFDLVTLVNVLAACA 312
Query: 318 ----------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
K++ + L+DMY+KCG ++ A F + ++ VV ++
Sbjct: 313 NSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVSWTS 372
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+ GY GL EG LFH + + G+ P + V+ A +G
Sbjct: 373 LIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACACSG 416
>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
Length = 711
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 125/521 (23%), Positives = 206/521 (39%), Gaps = 145/521 (27%)
Query: 53 RTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 112
R I F DL +R ++ F D E++Y + C D + +QG ++H +I
Sbjct: 123 RKIYFADLSTESARELFTEFVK-DWNKQKLESKYYEGILC-IDKKAKKQGHLIHTHLITN 180
Query: 113 G----LELESDLLISLTAVCRY-----------QPNVTLRNAMISGYAKNGYAEEAVKLF 157
G L L + L+I V + +V AM+SGY++NG E+A LF
Sbjct: 181 GFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLF 240
Query: 158 P------------------------KWMDY------YIGKSEYRNNVIVNTVLIDMYAKC 187
+ +D I K + N+ V + L+D ++KC
Sbjct: 241 SDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKC 300
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN----EENEYGTAL 241
G ++ A F +++DVV +AMI GY + ++ +F F +L + G+ L
Sbjct: 301 GKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVL 360
Query: 242 DCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRYQPNVTLWNA-------- 290
S + L +HG + +LG ++ + LLI+ Y N +L +A
Sbjct: 361 RASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINA-----YAKNGSLRSAKDLRKGML 415
Query: 291 ---------MISGYAKNG-YAEEAVKLFPKWMDYYIG----------------------- 317
+I+GYA G Y+ +A+ LF + IG
Sbjct: 416 KKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGT 475
Query: 318 -------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
K + +V + LIDMYAK G ++ A FD +K+V+ +++ GY HG
Sbjct: 476 QIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHG 535
Query: 371 LGE-----------------------------------EGWVLFHH-IRKHGIEPRHQHY 394
G EG F++ + K+ I+PR +HY
Sbjct: 536 YGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHY 595
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +VDL AR G A+ + + I+ S+ A+L A I
Sbjct: 596 SCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSI 636
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 142/353 (40%), Gaps = 97/353 (27%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDV-----VMRSAMIVGYGLHEWSAFGSFDGL-LS 231
T LI MY+ GSVD A FD+T + + + R+ + G+G + + + +
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 232 NEENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP---- 283
++ Y L C + L +GK +H + + G S + I T V Y
Sbjct: 176 SDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYS--SHVYIMTTLVDMYARFGCV 233
Query: 284 -------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------------- 314
NV W+AMI+ YAKNG A EA++ F + M
Sbjct: 234 DYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQ 293
Query: 315 ----------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
YI + + + V + L+ MY +CG +++ FDR D+DVV
Sbjct: 294 ACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVS 353
Query: 359 RSAMTVGYGLHGLG-----------------------------------EEGWVLFHHI- 382
+++ YG+HG G EEG LF +
Sbjct: 354 WNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMW 413
Query: 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R HGI+P+ +HYA +VDLL RA + A K + +M E V +LL + +I
Sbjct: 414 RDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRI 466
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 53/190 (27%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTL 136
C + L +GK +H + + G S + I T V Y NV
Sbjct: 193 CTVNHLMKGKEIHAHLTRRGYS--SHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS 250
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDY--------------------------------Y 164
+AMI+ YAKNG A EA++ F + M Y
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGY 310
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
I + + + V + L+ MY +CG +++ FDR D+DVV +++I YG+H + A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 223 FGSFDGLLSN 232
F+ +L+N
Sbjct: 371 IQIFEEMLAN 380
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 82/195 (42%), Gaps = 49/195 (25%)
Query: 16 VLKACVA----LPSLLMGPRVHGQIFSLGF---------------------LVCYLFDGL 50
VLKACVA + L+ G +H + G+ Y+F G+
Sbjct: 184 VLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGM 243
Query: 51 FDRTIV-FLDLYHLWSRT--EWSAFGSFDGLLSNEENEYGTA------LDCSCDLEFLEQ 101
R +V + + +++ + A +F ++ ++ + L L LEQ
Sbjct: 244 PVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ 303
Query: 102 GKIVHGFMIKLGLEL---ESDLLISLTAVC------------RYQPNVTLRNAMISGYAK 146
GK++HG++++ GL+ L+++ C + +V N++IS Y
Sbjct: 304 GKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGV 363
Query: 147 NGYAEEAVKLFPKWM 161
+GY ++A+++F + +
Sbjct: 364 HGYGKKAIQIFEEML 378
>gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
[Vitis vinifera]
Length = 711
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 115/528 (21%), Positives = 198/528 (37%), Gaps = 142/528 (26%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFDGLFDRTIVFLDLYHL 63
N T VL +C + +L + ++HG I GF L L D ++ + V D +
Sbjct: 160 NEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVD-IYGKCRVMSDARRM 218
Query: 64 WSRTE------WSAFGSFDGLLSNEEN------------------EYGTALDCSCDLEFL 99
+ E W+ + NE+ + AL + L
Sbjct: 219 FDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISAL 278
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
++G +HG I++G Y + + +++I YAK G E A ++F
Sbjct: 279 QEGIQIHGVAIRIG----------------YDEDEVVSSSLIDMYAKCGDLESACRIF-- 320
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LH 218
+ N+I T ++ YA G A + FD ++ V+ +AM+ GY
Sbjct: 321 -------ELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFC 373
Query: 219 EWSAFGSFDGLLSNEENE-----YGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESD 270
+W F L+ + G L+ L +E GK VHGF+ + GL +
Sbjct: 374 QWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGN 433
Query: 271 LLISLTAVCRYQPNVTL-------------WNAMISGYAKNGYAEEAVKLF--------- 308
L+ + C + L WNA+++ +A++G +EEA+ +F
Sbjct: 434 ALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEMQWETTP 493
Query: 309 --------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
K + ++ ++ Y +V+ L+DMY+KC ++ A F
Sbjct: 494 SKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVF 553
Query: 349 DRTLDKDVVMRSAMTVG----------YGLHGLGEEGWVLFHHI---------------- 382
+D+++ ++M +G GL GL EE V HI
Sbjct: 554 KEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAG 613
Query: 383 ----------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
K+ I PR +HY +++L R G+ + FI MP E
Sbjct: 614 LGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFE 661
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 53/259 (20%)
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA--FGSFD--GLLSNE 233
I+ Y KC +D A F+ +D +AMI Y G E + F + G+ +NE
Sbjct: 102 IETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANE 161
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRY--------- 281
+ + L + L K +HG ++K G + L+ + CR
Sbjct: 162 IT-FASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFD 220
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG--------------------- 317
PN WN ++ Y + G +EAV +F K + I
Sbjct: 221 EIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQE 280
Query: 318 ---------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ Y + +V++ LIDMYAKCG ++ A F+ K+++ +++ GY +
Sbjct: 281 GIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAM 340
Query: 369 HGLGEEGWVLFHHIRKHGI 387
G E VLF + + +
Sbjct: 341 SGQTREARVLFDEMPERSV 359
>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 803
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 114/513 (22%), Positives = 201/513 (39%), Gaps = 133/513 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLD 59
M + V + T P V+K+ + SL G ++H + L F+ Y+ + L +++
Sbjct: 117 MVFSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLIS---LYMK 173
Query: 60 LYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 119
L W A F+ + + + + + LE + ++ M+K G + +
Sbjct: 174 L-----GCSWDAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRF 228
Query: 120 LLISLTAVCR--YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177
+S C Y PN+ + +A E +V+V
Sbjct: 229 STMSALGACSHVYSPNM---GKELHCHAVRSRIETG-------------------DVMVM 266
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEEN 235
T ++DMY+K G V A F + +++V + +I Y + AF F + +E+N
Sbjct: 267 TSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKM--SEQN 324
Query: 236 EYGTALDCSCDLEFLE-----QGKIVHGFMIKLGL------------------ELES-DL 271
G D + L +G+ +HG+ ++ G +L+S ++
Sbjct: 325 --GLQPDVITLINLLPACAILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEV 382
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----------------- 314
+ A + N+ WN++I+ Y +NG A++LF K D
Sbjct: 383 IFDRIA----EKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYA 438
Query: 315 -------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
YI KS Y +N I+ L+ MYA CG ++ A F+ L KDVV ++
Sbjct: 439 ESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNS 498
Query: 362 MTVGYGLHGLG-----------------------------------EEGWVLFHHI-RKH 385
+ + Y +HG G +EGW F + R++
Sbjct: 499 IIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREY 558
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
GI+P +HY ++DL+ R G + A +FI MP
Sbjct: 559 GIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMP 591
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 82/288 (28%)
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCR 280
+S+ + + S DL G+ +H + G L++ + +L + + R
Sbjct: 114 ISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIAR 173
Query: 281 Y------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PK--------------- 310
+ V WN+MISGY +NG+ +EAV+LF P
Sbjct: 174 KVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVG 233
Query: 311 ------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
W+ YI ++ + NV++ T L++MY++CG+V A FD +K++V +AM
Sbjct: 234 AIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMIS 293
Query: 365 GYGLHGLGEEGWVLFHHI------------------------------------RKHGIE 388
GYG+HG G + LF+ + +++G+
Sbjct: 294 GYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLV 353
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKI 435
P +H +VD+L RAG+ N A++FI N P E +V A+L A K+
Sbjct: 354 PSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKM 401
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 155/395 (39%), Gaps = 104/395 (26%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA---------VCR 129
+S+ + + S DL G+ +H + G L++ + +L + + R
Sbjct: 114 ISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIAR 173
Query: 130 Y------QPNVTLRNAMISGYAKNGYAEEAVKLF---------PK--------------- 159
+ V N+MISGY +NG+ +EAV+LF P
Sbjct: 174 KVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVG 233
Query: 160 ------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
W+ YI ++ + NV++ T L++MY++CG+V A FD +K++V +AMI
Sbjct: 234 AIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMIS 293
Query: 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
GYG+H GS L NE + G
Sbjct: 294 GYGMH---GHGSQAIELFNEMSFDGP---------------------------------- 316
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--NNVIVNTVL 331
+PN + A++S A G +E ++F K EY +V +
Sbjct: 317 --------RPNNVTFVAVLSACAHAGLVDEGRQIFTTM------KQEYGLVPSVEHQVCM 362
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKD--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+DM + G ++ A F T K+ + +AM +H + G + H+ IEP
Sbjct: 363 VDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SIEP 420
Query: 390 RHQ-HYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
+ HY + ++ A AG + K I N+ I RL
Sbjct: 421 ENPGHYVMLSNIYALAGRMDRVEK-IRNIMIRNRL 454
>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 136/354 (38%), Gaps = 86/354 (24%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE---WSAFGSF 226
Y++ V ++ LI MY KC +L+ FD DK+ V SA I+G L + F F
Sbjct: 41 YQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSA-IIGACLQDDRCKEGFSLF 99
Query: 227 DGLLSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA-------- 277
+LS G L+ + E+ V+ +++ GL+ + + +
Sbjct: 100 RQMLSEGSRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRV 159
Query: 278 -VCR------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE---------- 320
V R ++ W I Y K EA+ L + M I
Sbjct: 160 EVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRAC 219
Query: 321 ---------------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
Y + V T LID+Y KCGS+ A FD +++++
Sbjct: 220 STLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITW 279
Query: 360 SAMTVGYGLHGLGEE----------------------------------GWVLFHHI-RK 384
SAM GYG+HG G E GW F+ + R
Sbjct: 280 SAMISGYGMHGWGREALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARD 339
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQ 438
G+ PR +HYA +VD+L RAG + A FI MP+ +V ALL A +I +
Sbjct: 340 FGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLN 393
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 116/470 (24%), Positives = 187/470 (39%), Gaps = 116/470 (24%)
Query: 72 FGSFDGLLSNEENEYGTALDCSCDLEFLE--------QGKIVHGFMIKLGLELESDLLIS 123
F S+ NEE ++ D S F + GK+ F+ + L ++L
Sbjct: 8 FSSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDV 67
Query: 124 LTAVCRY----QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM-------DYYIG------ 166
+ C + Q +V N+MIS Y NG+ EA+ F + + D+Y
Sbjct: 68 SLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKA 127
Query: 167 ---------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
K ++ NV V LI MY++ G +A FD +D+ +AM
Sbjct: 128 CGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAM 187
Query: 212 IVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
I G + +A + D L +E G ++ + L + KLGL +
Sbjct: 188 ISGL-IQNGNAAQALDVL--DEMRLEGIKMNFVTVVSILP---VFVDMYAKLGLLDSAHK 241
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------KWMDY---- 314
+ + V +V WN +I+GYA+NG A EA++++ W+
Sbjct: 242 VFEIIPV----KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAY 297
Query: 315 -YIG-------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
++G K+ +V V T LID+Y KCG + A F + + V +
Sbjct: 298 AHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWN 357
Query: 361 AMTVGYGLHGLGE-----------------------------------EGWVLFHHIRKH 385
A+ +G+HG E EG F ++++
Sbjct: 358 AIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEY 417
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GI+P +HY +VDLL RAGY A+ FI +MP++ S+ ALL A +I
Sbjct: 418 GIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRI 467
>gi|218190515|gb|EEC72942.1| hypothetical protein OsI_06806 [Oryza sativa Indica Group]
Length = 1030
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 188/447 (42%), Gaps = 75/447 (16%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHL 63
A +AP+ + +L AC + +L +G RVHG IF L T + L
Sbjct: 398 AGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFR--------HPELLQETSLMNALVSF 449
Query: 64 WSRTEW--SAFGSFDGLLSNEENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDL 120
+S+ + +AF SF + + + + L C+ +EQ + G M + +S
Sbjct: 450 YSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVT 509
Query: 121 L---ISLTAVCR---------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD 162
+ I ++ C Y + ++ NA++ YAK GY +A LF
Sbjct: 510 ILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLF----- 564
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-- 220
+S N++ +I Y K V+ A M F+ +KD+ + M Y ++
Sbjct: 565 ----RSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCD 620
Query: 221 SAFGSFDGLLS---NEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
AF F L S N + T + +C L ++ K HG+M++ LE
Sbjct: 621 QAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE---------- 670
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
++ L A++ Y+K G A LF + ++++ T +I YA
Sbjct: 671 -------DIHLEGALLDAYSKCGNIANAYNLF---------QVSLHKDLVIFTAMIGAYA 714
Query: 337 KCGSVDLAPMFFDRTLDKDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRH 391
G + A F + L D+ V+ +A+ GL + G +F IR+ +G+EP
Sbjct: 715 MHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTE 774
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMP 418
+H A +VDLLAR+G A+ F ++MP
Sbjct: 775 EHCACMVDLLARSGRLQDAYSFALDMP 801
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAF 223
K Y + +V ++DMY + GS+ A FD D V R+ +I GL+ F
Sbjct: 122 KVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYN-DVF 180
Query: 224 GSFDGLLSNEENE-------YGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLI 273
F +L++ +E L L L G+ +HG++IK GLE L + L+
Sbjct: 181 HLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALV 240
Query: 274 SLTAVCRYQ---------------PNVTLWNAMISGYAKNGYAEEAVKLF 308
S+ A C +V WN++I+GY++NG EEA+ LF
Sbjct: 241 SMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALF 290
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCG---SVDLAPMFFDRTLDKDVVMRSAMIVGY---GL 217
Y+ K+ + + L+ MYAKCG ++D A + F KDVV +++I GY GL
Sbjct: 223 YVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGL 282
Query: 218 HEWSAFGSFDGLLSNE-ENEYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELE---- 268
E A F ++S E Y T + CS GK +HGF+++ GLE++
Sbjct: 283 FE-EALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVS 341
Query: 269 SDLLISLTAVCRYQP-----------NVTLWNAMISGYAKNGYAEEAVKLF 308
+ L+ + VC + ++ WN +I+GY N Y A+KLF
Sbjct: 342 NALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLF 392
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 86/426 (20%), Positives = 156/426 (36%), Gaps = 132/426 (30%)
Query: 96 LEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQ---------------PNVTLR 137
L L G+ +HG++IK GLE L + L+S+ A C +V
Sbjct: 211 LRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSW 270
Query: 138 NAMISGYAKNGYAEEAVKLF-------------------------------PKWMDYYIG 166
N++I+GY++NG EEA+ LF K + ++
Sbjct: 271 NSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVV 330
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
+ ++ V+ L+ Y+K + F + D+V + +I GY ++ + A
Sbjct: 331 RHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALK 390
Query: 225 SFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES----DLLISLT 276
F GLL + + + L + L G VHG++ + L+ + L+S
Sbjct: 391 LFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFY 450
Query: 277 AVC-----RYQPNVTL-------WNAMISGYAKN-GYAEEAVKLFPK-WMDY-------- 314
+ C ++ +T+ WNA++S A + + E+ +L + W D
Sbjct: 451 SQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTI 510
Query: 315 --------------------YIGKSEYRNNVIVNTVLIDMYAKCG--------------- 339
Y + Y + V ++D YAKCG
Sbjct: 511 LNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGR 570
Query: 340 ----------------SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
V+ A M F+ +KD+ + M+ Y + L ++ + LFH ++
Sbjct: 571 NIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQ 630
Query: 384 KHGIEP 389
G+ P
Sbjct: 631 SEGLNP 636
>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
Length = 750
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 116/468 (24%), Positives = 182/468 (38%), Gaps = 125/468 (26%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
V PNG T +L+AC +LL PR VHGQI GF +F + +D+Y
Sbjct: 107 VPPNGFTFTFLLRAC----ALLGLPRPCGCVHGQIVRCGF-----GSDVFVQN-ALMDVY 156
Query: 62 H----LWSRTEWSAFGSFDGLLSNEENEYGTAL-------DCSCDLEFLE---QGKIVHG 107
H +A FD ++ + + + + D + + F E + +V
Sbjct: 157 HRCGGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSW 216
Query: 108 FMIKLGLELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
+ G D+ ++ AV P N N MISGYA +G E A +F + MD
Sbjct: 217 NTVVAGFARMGDM-VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDR-MD--- 271
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS 225
+ +V+ T ++ YAK G +D FD K++V +AMI GY
Sbjct: 272 -----QKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGY---------- 316
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
N + Y AL + L LE R++P+
Sbjct: 317 ------NHNSRYDEALR-TFQLMMLEG---------------------------RFRPDE 342
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+++S A+ G E + W+ +IGKS V + LIDM+AKCG V A
Sbjct: 343 ATLVSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAE 397
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------------- 372
F + + ++ + M G+ +GL
Sbjct: 398 SIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGG 457
Query: 373 --EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
+EGW +F+ + ++ I+PR +HY +VDLL RA + K I +
Sbjct: 458 LLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL 505
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 113/277 (40%), Gaps = 40/277 (14%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDL-----APMFFDRTLDKDVVMRSAMIVGYGLHE 219
I + + ++V V L+D+Y +CG A FD +D+DVV ++ IVG +
Sbjct: 137 IVRCGFGSDVFVQNALMDVYHRCGGGGGGGVGAARQVFDEMVDRDVVSWNS-IVGVYMSS 195
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
A G+ E + + +V + G D+ ++ AV
Sbjct: 196 GDATGAMGFF------------------EAMPERNVVSWNTVVAGFARMGDM-VTARAVF 236
Query: 280 RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
P N WN MISGYA +G E A +F + MD + +V+ T ++ YAK
Sbjct: 237 DRMPSRNAVSWNLMISGYAMSGDVEAARSVFDR-MD--------QKDVVSWTAMVSAYAK 287
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYAR 396
G +D FD K++V +AM GY + +E F + G P
Sbjct: 288 IGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVS 347
Query: 397 VVDLLARAG---YSNHAFKFIMNMPIELRLSVRRALL 430
VV A+ G Y N FI I L +++ AL+
Sbjct: 348 VVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALI 384
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 139/366 (37%), Gaps = 97/366 (26%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N +I+GYA+NG +EA +LF + ++V T ++ Y + V+ A F
Sbjct: 249 NTIITGYAQNGEIDEARQLFDE---------SPVHDVFTWTAMVSGYIQNRMVEEARELF 299
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGLLSNEENEYGTALDCSCDLEFLEQGKI 255
DR +++ V +AM+ GY E FD + + + T + + + K
Sbjct: 300 DRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKN 359
Query: 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
+ M K + W AMI+GY+++G++ EA++LF
Sbjct: 360 LFDKMPK--------------------RDPVSWAAMIAGYSQSGHSYEALRLFVLMEREG 399
Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
K + + K Y V L+ MY KCGS++ A
Sbjct: 400 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 459
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--------------------- 384
F KD+V + M GY HG GEE F +++
Sbjct: 460 DLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTG 519
Query: 385 ---------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
+G+ P QHYA +VDLL RAG A + NMP E ++ L
Sbjct: 520 LVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTL 579
Query: 430 LSAWKI 435
L A ++
Sbjct: 580 LGASRV 585
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 36/249 (14%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
NA++S Y +N EEA LF ++ + + L+ + K + A FF
Sbjct: 187 NALLSAYVQNSKLEEACVLFGSRENWAL---------VSWNCLLGGFVKKKKIVEARQFF 237
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D +DVV + +I GY + E +E D S + +V
Sbjct: 238 DSMKVRDVVSWNTIITGYAQN-------------GEIDEARQLFDESPVHDVFTWTAMVS 284
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
G++ +E +L + + N WNAM++GY + E A +LF D
Sbjct: 285 GYIQNRMVEEARELFDRMP-----ERNEVSWNAMLAGYVQGERVEMAKELF----DVMPC 335
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
+ NV +I YA+CG + A FD+ +D V +AM GY G E
Sbjct: 336 R-----NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALR 390
Query: 378 LFHHIRKHG 386
LF + + G
Sbjct: 391 LFVLMEREG 399
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 103/251 (41%), Gaps = 49/251 (19%)
Query: 138 NAMISGYAKNGYAEEAVKLFPK--------WMDYYIGKSEYRN--------------NVI 175
NAMISGY +NG E A LF + W G RN +V
Sbjct: 94 NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
++ YA+ G VD A FDR +K+ V +A++ Y + S L + EN
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQN--SKLEEACVLFGSREN 211
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
+ +C ++ GF+ K + S+ +V WN +I+GY
Sbjct: 212 WALVSWNC-----------LLGGFVKKKKIVEARQFFDSMKV-----RDVVSWNTIITGY 255
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
A+NG +EA +LF + ++V T ++ Y + V+ A FDR +++
Sbjct: 256 AQNGEIDEARQLFDE---------SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERN 306
Query: 356 VVMRSAMTVGY 366
V +AM GY
Sbjct: 307 EVSWNAMLAGY 317
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 46/255 (18%)
Query: 138 NAMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
N IS Y + G EA+++F P+W + + +I Y + G +LA
Sbjct: 63 NVAISSYMRTGRCSEALRVFKRMPRW------------SSVSYNAMISGYLRNGEFELAR 110
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQ 252
M FD ++D+V + MI GY + A F+ + + + T L ++
Sbjct: 111 MLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDD 170
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ V M + N WNA++S Y +N EEA LF
Sbjct: 171 ARRVFDRMP--------------------EKNDVSWNALLSAYVQNSKLEEACVLFGSRE 210
Query: 313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
++ + + L+ + K + A FFD +DVV + + GY +G
Sbjct: 211 NWAL---------VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEI 261
Query: 373 EEGWVLFHHIRKHGI 387
+E LF H +
Sbjct: 262 DEARQLFDESPVHDV 276
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
++ WN IS Y + G EA+++F P+W + + +I Y + G
Sbjct: 58 DIKEWNVAISSYMRTGRCSEALRVFKRMPRW------------SSVSYNAMISGYLRNGE 105
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGY 366
+LA M FD ++D+V + M GY
Sbjct: 106 FELARMLFDEMPERDLVSWNVMIKGY 131
>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Glycine max]
Length = 548
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 137/338 (40%), Gaps = 77/338 (22%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+I K + + V++ LI MY+KC V+ A FD KD V +A++ GY
Sbjct: 155 FILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQ----- 209
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
G+ + L E+ L + + ++ GF K G + + L +P
Sbjct: 210 GAANEALGLVESMKLMGLKPN----VVTWNSLISGFSQK-GDQGRVSEIFRLMIADGVEP 264
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----------------------------- 314
+V W ++ISG+ +N +EA F + + +
Sbjct: 265 DVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAARVSVGREIH 324
Query: 315 -YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
Y + ++ V + L+DMYAKCG + A F R +K+ V +++ G+ HG E
Sbjct: 325 GYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCE 384
Query: 374 EGWVLFHHIRKHG-------------------------------------IEPRHQHYAR 396
E LF+ + K G IEPR +HYA
Sbjct: 385 EAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIEPRLEHYAC 444
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+VDLL RAG + A+ I MPIE L V ALL+A +
Sbjct: 445 MVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAACR 482
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 118/297 (39%), Gaps = 44/297 (14%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHEWSAFG- 224
R NV+ + L+ Y CG + A FD+ +V A+I G+ H + F
Sbjct: 60 RFNVVASN-LVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSE 118
Query: 225 --SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE----SDLLISLTAV 278
+ GL N + L + G+ +HGF++K EL+ S L++ +
Sbjct: 119 MQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKC 178
Query: 279 CRYQ-----------PNVTLWNAMISGYAKNGYAEEAVKLFP--KWMDYYIGKSEYRNNV 325
+ + + NA+++GY + G A EA+ L K M + NV
Sbjct: 179 AKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMG-------LKPNV 231
Query: 326 IVNTVLIDMYAKCGS----VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ LI +++ G ++ + ++ DVV +++ G+ + +E + F
Sbjct: 232 VTWNSLISGFSQKGDQGRVSEIFRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQ 291
Query: 382 IRKHGIEPRHQHYARVVDLLARA-----GYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ HG P + ++ A A G H + + +E + VR AL+ +
Sbjct: 292 MLSHGFHPTSATISALLPACATAARVSVGREIHGYALVTG--VEGDIYVRSALVDMY 346
>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
[Vitis vinifera]
Length = 656
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 140/355 (39%), Gaps = 91/355 (25%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-----SAFG 224
Y + V LI Y +CG FD +K+VV +A+I G ++ FG
Sbjct: 187 YEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFG 246
Query: 225 SF-DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
DG + Y ++L L+ + +G+ +HG + KLG+ DL I + Y
Sbjct: 247 KMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHF--DLCIESALMDMYSK 304
Query: 284 NVTLWNA-----------------MISGYAKNGYAEEAVKLF-----------PKWMDYY 315
+L +A ++ G A+NG+ EE++++F P +
Sbjct: 305 CGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAI 364
Query: 316 IG-------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+G K + +N VN LI+MY+KCG +D + F ++
Sbjct: 365 LGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNS 424
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIR--------------------------------- 383
V ++M + HG G L+ +R
Sbjct: 425 VSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLES 484
Query: 384 ---KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI PR +HYA VVD++ RAG N A KFI +P + + V +ALL A I
Sbjct: 485 MAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSI 539
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 112/273 (41%), Gaps = 52/273 (19%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM---RSAMIVGYGLHE--WS 221
+ RN ++V L+ MY++CG + A FD KD + R + ++G G E +
Sbjct: 82 RDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFR 141
Query: 222 AFGSF--DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLT 276
F G+ ++ T L EF K++H + G E E + LI+
Sbjct: 142 VFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSY 201
Query: 277 AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI-------- 316
C + NV W A+ISG ++ + EE++KLF K D +
Sbjct: 202 FRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYL 261
Query: 317 -------GKSEYRN---------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
G R ++ + + L+DMY+KCGS++ A F+ +
Sbjct: 262 SSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEV 321
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
D V + + VG +G EE +F + K+G+
Sbjct: 322 DEVSMTVILVGLAQNGFEEESIQVFVKMVKNGV 354
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 49/190 (25%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
DG + Y ++L L+ + +G+ +HG + KLG+ DL I + Y +
Sbjct: 250 DGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHF--DLCIESALMDMYSKCGS 307
Query: 136 LRNA-----------------MISGYAKNGYAEEAVKLF-----------PKWMDYYIG- 166
L +A ++ G A+NG+ EE++++F P + +G
Sbjct: 308 LEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGV 367
Query: 167 ------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 208
K + +N VN LI+MY+KCG +D + F ++ V
Sbjct: 368 FGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSW 427
Query: 209 SAMIVGYGLH 218
++MI + H
Sbjct: 428 NSMIAAFARH 437
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 108/471 (22%), Positives = 190/471 (40%), Gaps = 114/471 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
MQ PN T +L AC + ++ G V+ ++ G + D + +
Sbjct: 214 MQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGI------EADVDIRNALIGM 267
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
Y + A+ +F G+ + T +D F++ GK H + + E+ SD
Sbjct: 268 Y-VKCGCMSDAWKTFKGMPIRNTKSWNTLID-----GFVQNGK--HKEALTMFEEMLSDG 319
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
+I P+V +++S YA+ G ++ +++ YI E ++I+ L
Sbjct: 320 VI---------PDVITLVSVLSTYAQLGDLQQG-----RYLHNYIKDHEIHCDIILQNSL 365
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTA 240
I+MYAKCG + A + F+ +D+V +AM+ G GL ++ TA
Sbjct: 366 INMYAKCGDMAAAEIIFENMARRDIVSWTAMVC----------GYVKGL------QFRTA 409
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300
+ D++ D++ S A+ +++S ++ G
Sbjct: 410 FNLFDDMKV-------------------RDVMASEMALV----------SLLSACSQLGA 440
Query: 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
++ ++ YI + R ++ + + L+DMYAKCG +D A F R K + +
Sbjct: 441 LDKGREIHS-----YIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWN 495
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRK----------------------------H------- 385
AM G G G+E LF + K H
Sbjct: 496 AMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLT 555
Query: 386 -GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GI P ++HY +VDLL RAG + A+ FI MPI+ + +LL+A ++
Sbjct: 556 LGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRV 606
>gi|242078691|ref|XP_002444114.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
gi|241940464|gb|EES13609.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
Length = 718
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 47/184 (25%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
N W+AM++GY + G A EA+++F KW+
Sbjct: 173 NAVSWSAMVNGYVQAGDAREALQIFAQMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVH 232
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
Y+ R V T L+DMY+KCG V LA F+R DK+V+ + M +HG G
Sbjct: 233 GYLKAHGIRITVFFGTALVDMYSKCGEVQLAMEVFERMEDKNVLAWTTMIKSLAMHGRGS 292
Query: 374 EGWVLFHH-----------------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
E +LF +RK+GI+P+ +HY +VDLLAR G+ + A + I
Sbjct: 293 EALMLFTQMVSSGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLDEAKEMIQK 352
Query: 417 MPIE 420
MP++
Sbjct: 353 MPMK 356
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 110/277 (39%), Gaps = 64/277 (23%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 162
N +AM++GY + G A EA+++F KW+
Sbjct: 173 NAVSWSAMVNGYVQAGDAREALQIFAQMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVH 232
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-- 220
Y+ R V T L+DMY+KCG V LA F+R DK+V+ + MI +H
Sbjct: 233 GYLKAHGIRITVFFGTALVDMYSKCGEVQLAMEVFERMEDKNVLAWTTMIKSLAMHGRGS 292
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH-GFMIKL---------------G 264
A F ++S+ + G L S ++ + KI H G M+ L
Sbjct: 293 EALMLFTQMVSSGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLDEAKEMIQK 352
Query: 265 LELESDLLI--SLTAVCRYQPNVTLWNAMISGYA-----KNGYAEEAVKLFPKWMDYYIG 317
+ ++ D LI +L A CR+ NV L ++ + K+G ++ D G
Sbjct: 353 MPMKPDALIWGALMAGCRFHKNVELAEYVVRHWILLEPDKSGAYVLLANIYAASAD---G 409
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
+ Y+N ++ + KC V FD T+ K
Sbjct: 410 RDTYKNFLMFHAKFYHSSVKCVGV------FDLTVVK 440
>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
Length = 542
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 140/355 (39%), Gaps = 91/355 (25%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-----SAFG 224
Y + V LI Y +CG FD +K+VV +A+I G ++ FG
Sbjct: 73 YEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFG 132
Query: 225 SF-DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
DG + Y ++L L+ + +G+ +HG + KLG+ DL I + Y
Sbjct: 133 KMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHF--DLCIESALMDMYSK 190
Query: 284 NVTLWNA-----------------MISGYAKNGYAEEAVKLF-----------PKWMDYY 315
+L +A ++ G A+NG+ EE++++F P +
Sbjct: 191 CGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAI 250
Query: 316 IG-------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+G K + +N VN LI+MY+KCG +D + F ++
Sbjct: 251 LGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNS 310
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIR--------------------------------- 383
V ++M + HG G L+ +R
Sbjct: 311 VSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLES 370
Query: 384 ---KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI PR +HYA VVD++ RAG N A KFI +P + + V +ALL A I
Sbjct: 371 MAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSI 425
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 49/190 (25%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
DG + Y ++L L+ + +G+ +HG + KLG+ DL I + Y +
Sbjct: 136 DGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHF--DLCIESALMDMYSKCGS 193
Query: 136 LRNA-----------------MISGYAKNGYAEEAVKLF-----------PKWMDYYIG- 166
L +A ++ G A+NG+ EE++++F P + +G
Sbjct: 194 LEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGV 253
Query: 167 ------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 208
K + +N VN LI+MY+KCG +D + F ++ V
Sbjct: 254 FGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSW 313
Query: 209 SAMIVGYGLH 218
++MI + H
Sbjct: 314 NSMIAAFARH 323
>gi|297606990|ref|NP_001059320.2| Os07g0259400 [Oryza sativa Japonica Group]
gi|255677648|dbj|BAF21234.2| Os07g0259400 [Oryza sativa Japonica Group]
Length = 521
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 36/274 (13%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V+V T L+DMYAKCG V A FD + ++ V +A+IV YG H+ AF F ++
Sbjct: 150 DVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMM 209
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ +E + L D+ + +H + ++ GL Q +
Sbjct: 210 RHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGL----------------QDFLQ 253
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ NA+I Y KNG+ +EA + F + +++ + ++ +A G A
Sbjct: 254 VGNALIMAYGKNGFVQEAKRTFGMI---------HNPDLVTWSSMVSSFAYLGLAKSAID 304
Query: 347 FFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLL 401
FDR L + + +G GL E+G+ F + R + I+P QH A +VDLL
Sbjct: 305 LFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLL 364
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG A++F++NM + + V A L A ++
Sbjct: 365 GRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRM 398
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS ++ V T L D YAK G VD A FD T +D V+ + M Y HGL E W
Sbjct: 34 KSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWD 93
Query: 378 LFHHIRKHG 386
+F +R+ G
Sbjct: 94 VFGSMRRSG 102
>gi|222622633|gb|EEE56765.1| hypothetical protein OsJ_06312 [Oryza sativa Japonica Group]
Length = 836
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 188/447 (42%), Gaps = 75/447 (16%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHL 63
A +AP+ + +L AC + +L +G RVHG IF L T + L
Sbjct: 263 AGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFR--------HPELLQETSLMNALVSF 314
Query: 64 WSRTEW--SAFGSFDGLLSNEENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDL 120
+S+ + +AF SF + + + + L C+ +EQ + G M + +S
Sbjct: 315 YSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVT 374
Query: 121 L---ISLTAVCR---------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD 162
+ I ++ C Y + ++ NA++ YAK GY +A LF
Sbjct: 375 ILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLF----- 429
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-- 220
+S N++ +I Y K V+ A M F+ +KD+ + M Y ++
Sbjct: 430 ----RSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCD 485
Query: 221 SAFGSFDGLLS---NEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
AF F L S N + T + +C L ++ K HG+M++ LE
Sbjct: 486 QAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE---------- 535
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
++ L A++ Y+K G A LF + ++++ T +I YA
Sbjct: 536 -------DIHLEGALLDAYSKCGNIANAYNLF---------QVSLHKDLVIFTAMIGAYA 579
Query: 337 KCGSVDLAPMFFDRTLDKDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRH 391
G + A F + L D+ V+ +A+ GL + G +F IR+ +G+EP
Sbjct: 580 MHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTE 639
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMP 418
+H A +VDLLAR+G A+ F ++MP
Sbjct: 640 EHCACMVDLLARSGRLQDAYSFALDMP 666
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCG---SVDLAPMFFDRTLDKDVVMRSAMIVGY---GL 217
Y+ K+ + + L+ MYAKCG ++D A + F KDVV +++I GY GL
Sbjct: 88 YVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGL 147
Query: 218 HEWSAFGSFDGLLSNE-ENEYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELE---- 268
E A F ++S E Y T + CS GK +HGF+++ GLE++
Sbjct: 148 FE-EALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVS 206
Query: 269 SDLLISLTAVCRYQP-----------NVTLWNAMISGYAKNGYAEEAVKLF 308
+ L+ + VC + ++ WN +I+GY N Y A+KLF
Sbjct: 207 NALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLF 257
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 29/160 (18%)
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENE- 236
+DMY + GS+ A FD D V R+ +I GL+ F F +L++ +E
Sbjct: 1 MDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYN-DVFHLFRAMLASGVDES 59
Query: 237 ------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRYQ----- 282
L L L G+ +HG++IK GLE ++ + L+S+ A C
Sbjct: 60 MPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDD 119
Query: 283 ----------PNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+V WN++I+GY++NG EEA+ LF + +
Sbjct: 120 AHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMI 159
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/426 (19%), Positives = 157/426 (36%), Gaps = 132/426 (30%)
Query: 96 LEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRYQ---------------PNVTLR 137
L L G+ +HG++IK GLE ++ + L+S+ A C +V
Sbjct: 76 LRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSW 135
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDY-------------------------------YIG 166
N++I+GY++NG EEA+ LF + + ++
Sbjct: 136 NSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVV 195
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
+ ++ V+ L+ Y+K + F + D+V + +I GY ++ + A
Sbjct: 196 RHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALK 255
Query: 225 SFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES----DLLISLT 276
F GLL + + + L + L G VHG++ + L+ + L+S
Sbjct: 256 LFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFY 315
Query: 277 AVC-----RYQPNVTL-------WNAMISGYAKN-GYAEEAVKLFPK-WMDY-------- 314
+ C ++ +T+ WNA++S A + + E+ +L + W D
Sbjct: 316 SQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTI 375
Query: 315 --------------------YIGKSEYRNNVIVNTVLIDMYAKCG--------------- 339
Y + Y + V ++D YAKCG
Sbjct: 376 LNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGR 435
Query: 340 ----------------SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
V+ A M F+ +KD+ + M+ Y + L ++ + LFH ++
Sbjct: 436 NIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQ 495
Query: 384 KHGIEP 389
G+ P
Sbjct: 496 SEGLNP 501
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCG---SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
Y+ K+ + + L+ MYAKCG ++D A + F KDVV +++ GY +GL
Sbjct: 88 YVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGL 147
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK----FIMNMPIELRLSVRR 427
EE LF + P + A V+ + Y H K F++ +E+ +SV
Sbjct: 148 FEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSN 207
Query: 428 ALLSAWK 434
AL++ +
Sbjct: 208 ALMAHYS 214
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 138/340 (40%), Gaps = 88/340 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKS 168
+P+VT N ++SGY + ++ ++LF + + GK
Sbjct: 380 KPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQ 439
Query: 169 EY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ N++ V + LIDMY+KCG V +A + F+ ++DVV ++MI G +H
Sbjct: 440 VHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSL 499
Query: 221 S--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDL 271
+ AF F + N E+ Y + ++ L + QG+ +H ++K G +
Sbjct: 500 NEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSS 559
Query: 272 LISLTAVCRYQ------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319
LI + A C N+ WN MI GYA+NG+ E+AV+LF +Y +
Sbjct: 560 LIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELF----EYMLTTK 615
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+ ++V VL G GL +E F
Sbjct: 616 QKPDSVTFIAVL--------------------------------TGCSHSGLVDEAIAYF 643
Query: 380 HHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+ + +GI P +HY ++D L RAG I MP
Sbjct: 644 NSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMP 683
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 127/323 (39%), Gaps = 64/323 (19%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
L+ G+ HG +K+GL+ N + N ++ Y K G +AV+LF
Sbjct: 158 LDDGRRCHGLAVKVGLD----------------GNQFVENGLLGMYTKCGSVADAVRLF- 200
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
WM N + T ++ A+ G+VD A F R + RSA+ V
Sbjct: 201 DWMS--------SPNEVSFTAMMGGLAQSGAVDDALRLFAR------MSRSAIRV----- 241
Query: 219 EWSAFGSFDGLLSNE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LIS 274
+ A S G + +Y A + + +H +++ G + + + LI
Sbjct: 242 DPVAVSSVLGACAQACAGDYNVA-------RAIRLAQSIHALVVRKGFDSDQHVGNSLID 294
Query: 275 LTA----------VCRYQPNVTL--WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 322
+ A V +V++ WN +++GY + G E A+++ + +S +
Sbjct: 295 MYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLD-----LMQESGFE 349
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
N + + ++ K V A FD+ V + + GYG L ++ LF +
Sbjct: 350 PNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRM 409
Query: 383 RKHGIEPRHQHYARVVDLLARAG 405
+ ++P A ++ +R G
Sbjct: 410 QHQNVQPDRTTLAVILSTCSRLG 432
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 97/242 (40%), Gaps = 50/242 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSL----------GFLVCY----- 45
MQ V P+ T ++L C L L +G +VH L G + Y
Sbjct: 409 MQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQ 468
Query: 46 ------LFDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSN----EENEYGTALD 91
+F+ + +R +V + + S E AF F + N E+ Y + ++
Sbjct: 469 VGIAQIIFNMMTERDVVCWNSMISGLAIHSLNE-EAFDFFKQMRENGMFPTESSYASMIN 527
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQ------------PNVTL 136
L + QG+ +H ++K G + LI + A C N+
Sbjct: 528 SCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVA 587
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
N MI GYA+NG+ E+AV+LF +Y + + ++V VL + G VD A +
Sbjct: 588 WNEMIHGYAQNGFGEKAVELF----EYMLTTKQKPDSVTFIAVLTGC-SHSGLVDEAIAY 642
Query: 197 FD 198
F+
Sbjct: 643 FN 644
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 131/605 (21%), Positives = 215/605 (35%), Gaps = 171/605 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-----------VCYLFD- 48
M+ + P+ T PLV A L +L +G VH G L + Y++
Sbjct: 98 MRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYAR 157
Query: 49 -GLFDRTIVFLDLYHLWSRTEWSAF----------------------GSFDGLLSNEENE 85
G + D W+A + DG
Sbjct: 158 CGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRT 217
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQPNVTLR----- 137
+ L+ L L G +HGF +K G+ ++ SL ++ C + +
Sbjct: 218 MESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277
Query: 138 -------NAMISGYAKNGYAEEAVKLF------------------------------PKW 160
++I Y + G+AE+AV+LF K
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKT 337
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----- 215
I + + ++V++ LI MYAKC VD+A F +D S+M+V Y
Sbjct: 338 FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGL 397
Query: 216 -----GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-LGLELES 269
L+ F D + N + + L L G+ H + IK L E S
Sbjct: 398 DLKCLELYREMQFRDKDEF-EYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSS 456
Query: 270 --DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD-- 313
+ LIS+ C +V W+A+IS Y+ G++++A+ L+ + +
Sbjct: 457 VANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEG 516
Query: 314 ----------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
++ ++ + T L+DMY KCG + +A
Sbjct: 517 VKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIAR 576
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG----------------------------------- 370
FD L++DVV + M GYG+HG
Sbjct: 577 KMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAG 636
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
L ++G LF + ++ +EP +HYA +VDLL ++G+ A + MPIE + LL
Sbjct: 637 LVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLL 696
Query: 431 SAWKI 435
A K+
Sbjct: 697 GACKM 701
>gi|302754546|ref|XP_002960697.1| hypothetical protein SELMODRAFT_73641 [Selaginella moellendorffii]
gi|300171636|gb|EFJ38236.1| hypothetical protein SELMODRAFT_73641 [Selaginella moellendorffii]
Length = 462
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 170/416 (40%), Gaps = 120/416 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF--------PKWMDYYIG---------KSEYR-- 171
+P+V +++ GYA+NG A+EA++LF P + G + E +
Sbjct: 20 RPDVVSLTSLVLGYAENGEAQEALRLFQLMKGGCEPNARTFVAGLKACSSLAAREEAKKT 79
Query: 172 --------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
+N I NT L+D YAKCGS+ + FDR +DVV +A+I+G+
Sbjct: 80 MAIHSRAARAKHDSDNFIANT-LVDAYAKCGSLPDSQRVFDRISRRDVVSWTALILGHAE 138
Query: 218 --HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
H A F GL E+ Y +L + +V + K G ++S +
Sbjct: 139 SDHPQVALELFSGL----EDCYVNSLTF---WDLFVANSLVDMYA-KCGSMVDSRRVFDG 190
Query: 276 TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF-PKWMD--------------------- 313
+ +V WN++ISGYA N E A++LF P ++
Sbjct: 191 M----RRHDVVSWNSLISGYADNDQGEAALELFVPMELEGCAHDSRTFLASLKACGCVGA 246
Query: 314 YYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
IG++ + ++V++ T L+D Y KCGS+ A F + KD+V +A+ G
Sbjct: 247 LDIGRTLHGKIRELGLDSDVVIATSLVDFYGKCGSMVDAEQVFSSIVTKDIVAWNALLTG 306
Query: 366 YGLH-------------------------------------GLGEEGWVLFHHIRK-HGI 387
Y GL E+G F ++ HG+
Sbjct: 307 YSRQGDTEALFQAFDRMMASRPRVRPDGVTFLCVLTACSHSGLVEQGKRYFEAMKSIHGL 366
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENM 443
+P +HY +VD+L R+ A + MP+ + +LSA Q+W+N+
Sbjct: 367 DPGMEHYHCLVDILGRSNRLEEAVAMVKEMPVVANIVSWTTVLSA----CQKWKNI 418
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGLLSNEENEY 237
MY KCGS+ A FDR DVV +++++GY + + F G +
Sbjct: 1 MYGKCGSMADARKIFDRMQRPDVVSLTSLVLGYAENGEAQEALRLFQLMKGGCEPNARTF 60
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLG-LELESDLLISLTAVCRY--------------- 281
L L E+ K + + +SD I+ T V Y
Sbjct: 61 VAGLKACSSLAAREEAKKTMAIHSRAARAKHDSDNFIANTLVDAYAKCGSLPDSQRVFDR 120
Query: 282 --QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ +V W A+I G+A++ + + A++LF D Y+ + + + N+ L+DMYAKCG
Sbjct: 121 ISRRDVVSWTALILGHAESDHPQVALELFSGLEDCYVNSLTFWDLFVANS-LVDMYAKCG 179
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
S+ + FD DVV +++ GY + GE LF
Sbjct: 180 SMVDSRRVFDGMRRHDVVSWNSLISGYADNDQGEAALELF 219
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 109/265 (41%), Gaps = 49/265 (18%)
Query: 138 NAMISGYAKNGYAEEAVKLF-PKWMD---------------------YYIGKSEY----- 170
N++ISGYA N E A++LF P ++ IG++ +
Sbjct: 200 NSLISGYADNDQGEAALELFVPMELEGCAHDSRTFLASLKACGCVGALDIGRTLHGKIRE 259
Query: 171 ---RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
++V++ T L+D Y KCGS+ A F + KD+V +A++ GY + F +
Sbjct: 260 LGLDSDVVIATSLVDFYGKCGSMVDAEQVFSSIVTKDIVAWNALLTGYSRQGDTEALFQA 319
Query: 226 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285
FD ++++ + C L +V E ++ ++ P +
Sbjct: 320 FDRMMASRPRVRPDGVTFLCVLTACSHSGLV---------EQGKRYFEAMKSIHGLDPGM 370
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
++ ++ ++ EEAV + + + N++ T ++ K ++++A
Sbjct: 371 EHYHCLVDILGRSNRLEEAVAM--------VKEMPVVANIVSWTTVLSACQKWKNIEVAK 422
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG 370
+ FD L+ D +A + ++G
Sbjct: 423 VAFDALLELDEEQPAARVLMANIYG 447
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH 393
MY KCGS+ A FDR DVV +++ +GY +G +E LF + K G EP +
Sbjct: 1 MYGKCGSMADARKIFDRMQRPDVVSLTSLVLGYAENGEAQEALRLF-QLMKGGCEPNART 59
Query: 394 Y 394
+
Sbjct: 60 F 60
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 119/486 (24%), Positives = 182/486 (37%), Gaps = 139/486 (28%)
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC------RY--- 130
EN G LD + D+++L+ K+ I L L I L AVC R+
Sbjct: 38 ENLCGQILDKNPDIKYLK--KLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFD 95
Query: 131 ---QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN--------------- 172
+ NV N MI Y N +A+ +F + I Y
Sbjct: 96 EIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWV 155
Query: 173 ---------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
NV V LI MY KCG + A D+ +DVV ++++ G
Sbjct: 156 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCAR 215
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
+ G FD AL+ ++E L K G M L + + L +++
Sbjct: 216 N-----GQFD-----------DALEVCKEMELLGL-KPDAGTMASLLPAVTNTCLDNVSF 258
Query: 278 VCRY-----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------------ 314
V ++ WN MI+ Y N EAV +F + D+
Sbjct: 259 VKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGD 318
Query: 315 ------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y+ + + N+++ LIDMYAKCG ++ A FD+ +DVV ++M
Sbjct: 319 LSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSM 378
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHG------------------------------------ 386
YG++G G + LF ++ G
Sbjct: 379 ISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECK 438
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQT 446
I PR +H+ +VDLL RAG + A+ FI MP+E V ALLSA ++ + NM+
Sbjct: 439 IVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRV----YSNMIIG 494
Query: 447 IRGIDE 452
+ D+
Sbjct: 495 LLAADQ 500
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 138/346 (39%), Gaps = 63/346 (18%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGL---FDRTIVFLDLY 61
+ P+ T P VLKA L +G ++H + +G L ++ +GL + + ++
Sbjct: 133 IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEAC 192
Query: 62 HLWSRTEWSAFGSFDGLLSN--EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 119
+ + S++ L++ ++ AL+ ++E L K G M L + +
Sbjct: 193 RVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGL-KPDAGTMASLLPAVTNT 251
Query: 120 LLISLTAVCRY-----QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY----------- 163
L +++ V ++ N MI+ Y N EAV +F + D+
Sbjct: 252 CLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 311
Query: 164 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
Y+ + + N+++ LIDMYAKCG ++ A FD+ +D
Sbjct: 312 VLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRD 371
Query: 205 VVMRSAMIVGYGLH-----EWSAFGSFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHG 258
VV ++MI YG++ S F L L+ + + + L L++G+
Sbjct: 372 VVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGR---- 427
Query: 259 FMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304
+ KL +T C+ P + + M+ + G +EA
Sbjct: 428 YYFKL-----------MTEECKIVPRIEHFVCMVDLLGRAGQVDEA 462
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 112/267 (41%), Gaps = 81/267 (30%)
Query: 250 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCR---YQPNV---------TLWNAMISG 294
+++G VHGF ++ G + + LI + A C Y V LWN++++G
Sbjct: 187 VKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAG 246
Query: 295 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 324
A+NG EEA+ +F K + Y+ + + +N
Sbjct: 247 CAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDN 306
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF----- 379
V +++ LIDMY KCG + +A FDR DVV +AM +GY LHG E VLF
Sbjct: 307 VFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMEL 366
Query: 380 -----HHIR--------------------------KHGIEPRHQHYARVVDLLARAGYSN 408
+HI +GI P +H A + D+L RAG +
Sbjct: 367 GNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELD 426
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKI 435
A+ FI M I+ SV LL A ++
Sbjct: 427 EAYNFISKMQIKPTASVWSTLLRACRV 453
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------RYQPNVTLR-----NAMISG 143
+++G VHGF ++ G + + LI + A C + N+ +R N++++G
Sbjct: 187 VKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAG 246
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
A+NG EEA+ +F K + Y+ + + +N
Sbjct: 247 CAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDN 306
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V +++ LIDMY KCG + +A FDR DVV +AMI+GY LH
Sbjct: 307 VFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALH 351
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 127/324 (39%), Gaps = 84/324 (25%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237
+ID Y K G + A M FDR + +DV+ + MI GY + G D E
Sbjct: 69 NAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAI-----VGKID--------EA 115
Query: 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297
D + + ++ GF +K G +E + CR +V WN+M++ YA+
Sbjct: 116 KRLFDEMPERNLVSXNSMLXGF-VKCG-NVEDAFGLFSEMPCR---DVVSWNSMLACYAQ 170
Query: 298 NGYAEEAVKLFPKW------------------------------MDYYIGKSEYRNNVIV 327
G EA+ LF + + YI + N IV
Sbjct: 171 CGKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV 230
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--- 384
T L+DMYAKCG + LA F+ KDV+ + + G + G +E LF +++
Sbjct: 231 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGV 290
Query: 385 ---------------------------------HGIEPRHQHYARVVDLLARAGYSNHAF 411
+GIEP+ +HY V+DLLARAG A
Sbjct: 291 EPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAM 350
Query: 412 KFIMNMPIELRLSVRRALLSAWKI 435
+ I MP+E ALL +I
Sbjct: 351 ELIGTMPMEPNPCALGALLGGCRI 374
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 132/605 (21%), Positives = 215/605 (35%), Gaps = 171/605 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-------VCYLFDGLFDR 53
M+ + P+ T PLV A L +L +G VH G L V ++ R
Sbjct: 98 MRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYAR 157
Query: 54 TIVFLDLYHLWSR------TEWSAF----------------------GSFDGLLSNEENE 85
D L+ W+A + DG
Sbjct: 158 CGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRT 217
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQPNVTLR----- 137
+ L+ L L G +HGF +K G+ ++ SL ++ C + +
Sbjct: 218 MESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277
Query: 138 -------NAMISGYAKNGYAEEAVKLF------------------------------PKW 160
++I Y + G+AE+AV+LF K
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKT 337
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---- 216
I + + ++V++ LI MYAKC VD+A F +D S+M+V Y
Sbjct: 338 FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGL 397
Query: 217 ------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-LGLELES 269
L+ F D + N + + L L G+ H + IK L E S
Sbjct: 398 DLKCLELYREMQFRDKDEF-EYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSS 456
Query: 270 --DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD-- 313
+ LIS+ C +V W+A+IS Y+ G++++A+ L+ + +
Sbjct: 457 VANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEG 516
Query: 314 ----------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
++ ++ + T L+DMY KCG + +A
Sbjct: 517 VKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIAR 576
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG----------------------------------- 370
FD L++DVV + M GYG+HG
Sbjct: 577 KMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAG 636
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
L ++G LF + ++ +EP +HYA +VDLL ++G+ A + MPIE + LL
Sbjct: 637 LVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLL 696
Query: 431 SAWKI 435
A K+
Sbjct: 697 GACKM 701
>gi|115445617|ref|NP_001046588.1| Os02g0290000 [Oryza sativa Japonica Group]
gi|47847947|dbj|BAD21737.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536119|dbj|BAF08502.1| Os02g0290000 [Oryza sativa Japonica Group]
Length = 930
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 188/447 (42%), Gaps = 75/447 (16%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHL 63
A +AP+ + +L AC + +L +G RVHG IF L T + L
Sbjct: 398 AGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFR--------HPELLQETSLMNALVSF 449
Query: 64 WSRTEW--SAFGSFDGLLSNEENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDL 120
+S+ + +AF SF + + + + L C+ +EQ + G M + +S
Sbjct: 450 YSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVT 509
Query: 121 L---ISLTAVCR---------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD 162
+ I ++ C Y + ++ NA++ YAK GY +A LF
Sbjct: 510 ILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLF----- 564
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-- 220
+S N++ +I Y K V+ A M F+ +KD+ + M Y ++
Sbjct: 565 ----RSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCD 620
Query: 221 SAFGSFDGLLS---NEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
AF F L S N + T + +C L ++ K HG+M++ LE
Sbjct: 621 QAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE---------- 670
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
++ L A++ Y+K G A LF + ++++ T +I YA
Sbjct: 671 -------DIHLEGALLDAYSKCGNIANAYNLF---------QVSLHKDLVIFTAMIGAYA 714
Query: 337 KCGSVDLAPMFFDRTLDKDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRH 391
G + A F + L D+ V+ +A+ GL + G +F IR+ +G+EP
Sbjct: 715 MHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTE 774
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMP 418
+H A +VDLLAR+G A+ F ++MP
Sbjct: 775 EHCACMVDLLARSGRLQDAYSFALDMP 801
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 29/174 (16%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAF 223
K Y + +V ++DMY + GS+ A FD D V R+ +I GL+ F
Sbjct: 122 KVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYN-DVF 180
Query: 224 GSFDGLLSNEENE-------YGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLI 273
F +L++ +E L L L G+ +HG++IK GLE L + L+
Sbjct: 181 HLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALV 240
Query: 274 SLTAVCRYQ---------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
S+ A C +V WN++I+GY++NG EEA+ LF + +
Sbjct: 241 SMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMI 294
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCG---SVDLAPMFFDRTLDKDVVMRSAMIVGY---GL 217
Y+ K+ + + L+ MYAKCG ++D A + F KDVV +++I GY GL
Sbjct: 223 YVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGL 282
Query: 218 HEWSAFGSFDGLLSNE-ENEYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELE---- 268
E A F ++S E Y T + CS GK +HGF+++ GLE++
Sbjct: 283 FE-EALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVS 341
Query: 269 SDLLISLTAVCRYQP-----------NVTLWNAMISGYAKNGYAEEAVKLF 308
+ L+ + VC + ++ WN +I+GY N Y A+KLF
Sbjct: 342 NALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLF 392
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/426 (20%), Positives = 156/426 (36%), Gaps = 132/426 (30%)
Query: 96 LEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQ---------------PNVTLR 137
L L G+ +HG++IK GLE L + L+S+ A C +V
Sbjct: 211 LRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSW 270
Query: 138 NAMISGYAKNGYAEEAVKLF-------------------------------PKWMDYYIG 166
N++I+GY++NG EEA+ LF K + ++
Sbjct: 271 NSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVV 330
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
+ ++ V+ L+ Y+K + F + D+V + +I GY ++ + A
Sbjct: 331 RHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALK 390
Query: 225 SFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES----DLLISLT 276
F GLL + + + L + L G VHG++ + L+ + L+S
Sbjct: 391 LFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFY 450
Query: 277 AVC-----RYQPNVTL-------WNAMISGYAKN-GYAEEAVKLFPK-WMDY-------- 314
+ C ++ +T+ WNA++S A + + E+ +L + W D
Sbjct: 451 SQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTI 510
Query: 315 --------------------YIGKSEYRNNVIVNTVLIDMYAKCG--------------- 339
Y + Y + V ++D YAKCG
Sbjct: 511 LNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGR 570
Query: 340 ----------------SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
V+ A M F+ +KD+ + M+ Y + L ++ + LFH ++
Sbjct: 571 NIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQ 630
Query: 384 KHGIEP 389
G+ P
Sbjct: 631 SEGLNP 636
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/422 (23%), Positives = 159/422 (37%), Gaps = 148/422 (35%)
Query: 130 YQP--NVTLRNAMISGYAKNGYAEEAVKLFPK--------WMDYYIGKSEYRN------- 172
Y P NV NAMISGY KNG + A LF K W++ G + +
Sbjct: 17 YMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRT 76
Query: 173 ---------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
NV+ TV+ID YA G ++ A + F+ ++ + S+MI GY
Sbjct: 77 FNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGY-------- 128
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
K+G E+ + V
Sbjct: 129 -------------------------------------CKIGNVKEARAIFDRVPV----R 147
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMD----------------------YYIGKSEY 321
N+ WN++I GY++NG+ EEA+ F K + +GK +
Sbjct: 148 NLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVH 207
Query: 322 R---------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ N +VN L+DMYAKCG + A + F+R +K+ ++M G+ +HG
Sbjct: 208 KMICAKGMKLNEFVVNA-LVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKT 266
Query: 373 EE-----------------------------------GWVLFHHIRKHGIEPRHQHYARV 397
+E G +F + ++G+ +HY +
Sbjct: 267 KEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCL 326
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM------QQWENMLQTIRGID 451
VDLL RAG A+ I +MP++ +V A L A +I M Q E++ + +D
Sbjct: 327 VDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMVEQVVEDVCTSDSSVD 386
Query: 452 EG 453
G
Sbjct: 387 SG 388
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH 393
MYAKCG + + F+ +++VV +AM GYG +G + VLF +
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNA----VS 56
Query: 394 YARVVDLLARAGYSNHAFKFIMNMPIELR 422
+ ++D AR+G A + +P EL+
Sbjct: 57 WIEMIDGFARSGDMVAARRTFNEVPFELK 85
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 125/517 (24%), Positives = 193/517 (37%), Gaps = 112/517 (21%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDR 53
A + P+ T P VL+ C +P MG VH + GF + Y G
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVA 250
Query: 54 TIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTAL--------------------DCS 93
D + W+A G N E E G L S
Sbjct: 251 ARKVFDGMAVTDCISWNAM--IAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVAS 308
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISL----TAVCRY-----------QPNVTLRN 138
L + K +HGF +K G ++ SL T++ R +
Sbjct: 309 GMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWT 368
Query: 139 AMISGYAKNGYAEEAVKLFP------------------------KWMDYYIGKSEYRNN- 173
AMISGY KNG+ ++A++++ +D I E N
Sbjct: 369 AMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNK 428
Query: 174 -----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-----AF 223
V+V L++MYAK +D A F +KDVV S+MI G+ + S F
Sbjct: 429 GFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYF 488
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
G + + AL L GK +H ++++ G+ E Y P
Sbjct: 489 RYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEG-----------YVP 537
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
N A++ Y K G A W + + + +V+ +++ + G D+
Sbjct: 538 N-----ALLDLYVKCGQTSYA------WAQFSVHSEK---DVVSWNIMLSGFVAHGLGDI 583
Query: 344 APMFFDRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVV 398
A F++ ++ D V A+ G+ +GW LFH + K I P +HYA +V
Sbjct: 584 ALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMV 643
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLL+R G A+ I MPI+ +V ALL+ +I
Sbjct: 644 DLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRI 680
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 80/282 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLF-------------------------PKW-----MDYYIGK 167
N M+ GY K G+ EEA+ L+ P W + ++ +
Sbjct: 166 NVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLR 225
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+ + V V L+ MYAKCG + A FD D + +AMI G+
Sbjct: 226 FGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGH------------ 273
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
N E E G L F+ L E++ +L+ ++T+V T+
Sbjct: 274 --FENHECEAGLEL-----------------FLTMLENEVQPNLM-TITSV-------TV 306
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ M+S + G+A+E M + K + +V LI MY G + A
Sbjct: 307 ASGMLS---EVGFAKE--------MHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKI 355
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
F R KD + +AM GY +G ++ ++ + H + P
Sbjct: 356 FSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSP 397
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLF-------------------------PKW-----MD 313
+V WN M+ GY K G+ EEA+ L+ P W +
Sbjct: 161 DVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVH 220
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
++ + + + V V L+ MYAKCG + A FD D + +AM G+ + E
Sbjct: 221 AHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECE 280
Query: 374 EGWVLFHHIRKHGIEP 389
G LF + ++ ++P
Sbjct: 281 AGLELFLTMLENEVQP 296
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 125/554 (22%), Positives = 209/554 (37%), Gaps = 152/554 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-----CYLFD-----GLFDRTI 55
V+P+ T ++LK+C AL L +G +VH G + L D D +
Sbjct: 145 VSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDAL 204
Query: 56 VFLDLYHLWSRTEWSAFGS-FDGLLSNEE--------------------NEYGTALDCSC 94
F Y + R W ++GS G + NE+ Y +A
Sbjct: 205 CFF--YGMPERN-WVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ---------------PNVTLR-- 137
+ L G+ +H IK + SD ++ V Y PN T+
Sbjct: 262 AMSCLNTGRQLHAHAIKN--KFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319
Query: 138 NAMISG--YAKNGYAEEAVKL------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
NAM+ G ++ + V L + Y+ G+ + + + +VL D+Y KC +
Sbjct: 320 NAMMVGLFMIRSSIRFDVVSLSGVFSACAETKGYFPGQQVH--CLAIKSVL-DLYGKCKA 376
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSNEENEYGTALDCSCDL 247
+ A + F KD V +A+I H F+ +L + T +D C
Sbjct: 377 LMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKC 436
Query: 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307
+++ + +H ++G + V WNA++SG++ N +E A K
Sbjct: 437 GIIDEAQKLHD---RIGGQ-----------------QVVSWNAILSGFSLNKESEAAQKF 476
Query: 308 FPKWMDY------------------------------YIGKSEYRNNVIVNTVLIDMYAK 337
F + +D I K E ++ +++ L+DMYAK
Sbjct: 477 FSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAK 536
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------ 391
CG + + + F++ +D V +AM GY LHGLG E +F ++K + P H
Sbjct: 537 CGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAV 596
Query: 392 ------------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
+H+A +VD+L R+ A KFI +MP +
Sbjct: 597 LRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQA 656
Query: 422 RLSVRRALLSAWKI 435
+ + LLS KI
Sbjct: 657 DAVIWKTLLSICKI 670
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 52/246 (21%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFD 227
R+ V NT+L Y+ G + A FD D DVV +A++ GY G+ + S +
Sbjct: 81 RDTVSWNTMLT-AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139
Query: 228 GL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY 281
+S + + L LE L G VH +K GLE++ L+ + CR
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------ 317
+ N W + I+G +N ++LF + +G
Sbjct: 200 LDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRS 259
Query: 318 ------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K+++ ++ +V T ++D+YAK S+ A F + V
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS 319
Query: 360 SAMTVG 365
+AM VG
Sbjct: 320 NAMMVG 325
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
R+ V NT+L Y+ G + A FD D DVV +A+ GY G+ +E LF
Sbjct: 81 RDTVSWNTMLT-AYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139
Query: 382 IRKHGIEPRHQHYARVVDLLA-----RAGYSNHAFKFIMNMPIELRL------------S 424
+ + G+ P +A ++ + G HA + I++R S
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199
Query: 425 VRRALLSAWKIPMQQWENMLQTIRGIDEGEK 455
+ AL + +P + W + I G + E+
Sbjct: 200 LDDALCFFYGMPERNWVSWGSAIAGCVQNEQ 230
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 136/307 (44%), Gaps = 65/307 (21%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----LHEWSAFGSFD 227
N+ V T LI+MY+ CG+ A FD D+ +A+I +H A FD
Sbjct: 93 NDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIH--IARKLFD 150
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV--CRYQPNV 285
+ E+N + SC ++HG++ + L SL + + +PN
Sbjct: 151 QM--PEKN----VISWSC---------MIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNE 195
Query: 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
++++S A+ G + KW+ YI K+ + +V++ T LIDMYAKCGS++ A
Sbjct: 196 FTMSSVLSACARLGALQHG-----KWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAK 250
Query: 346 MFFDRT-LDKDVVMRSAMTVGYGLHGLGEEGWVLFHH----------------------- 381
FD +KDV+ SAM + +HGL EE LF
Sbjct: 251 CIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHG 310
Query: 382 -------------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRA 428
+ ++G+ P QHY +VDL +RAG A+ + +MP+E + + A
Sbjct: 311 GLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGA 370
Query: 429 LLSAWKI 435
LL+ +I
Sbjct: 371 LLNGARI 377
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 32/199 (16%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
+ +PN ++++S A+ G + KW+ YI K+ + +V++ T LIDMYAKCG
Sbjct: 190 QLRPNEFTMSSVLSACARLGALQHG-----KWVHAYIDKTGMKIDVVLGTSLIDMYAKCG 244
Query: 189 SVDLAPMFFDRT-LDKDVVMRSAMIVGYGLH-------EWSAFGSFDGLLSNEENEYGTA 240
S++ A FD +KDV+ SAMI + +H E A DG+ N A
Sbjct: 245 SIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVT--FVA 302
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300
+ C+C VHG ++ G E ++ P + + M+ Y++ G
Sbjct: 303 VLCAC----------VHGGLVSEGNEYFKRMMNEYGV----SPMIQHYGCMVDLYSRAGR 348
Query: 301 AEEA---VKLFPKWMDYYI 316
E+A VK P D I
Sbjct: 349 IEDAWNVVKSMPMEPDVMI 367
>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]
Length = 912
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 116/540 (21%), Positives = 204/540 (37%), Gaps = 142/540 (26%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-----LVCYLFDGLFDRTIVFLDLYHL 63
N T VL +C + +L + ++HG I GF L L D ++ + V D +
Sbjct: 160 NEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVD-IYGKCRVMSDARRM 218
Query: 64 WSRTE------WSAFGSFDGLLSNEEN------------------EYGTALDCSCDLEFL 99
+ E W+ + NE+ + AL + L
Sbjct: 219 FDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISAL 278
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
++G +HG I++G Y + + +++I YAK G E A ++F
Sbjct: 279 QEGIQIHGVAIRIG----------------YDEDEVVSSSLIDMYAKCGDLESACRIF-- 320
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LH 218
+ N+I T ++ YA G A + FD ++ V+ +AM+ GY
Sbjct: 321 -------ELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFC 373
Query: 219 EWSAFGSFDGLLSNEENE-----YGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESD 270
+W F L+ + G L+ L +E GK VHGF+ + GL +
Sbjct: 374 QWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGN 433
Query: 271 LLISLTAVCRYQPNVTL-------------WNAMISGYAKNGYAEEAVKLF--------- 308
L+ + C + L WNA+++ +A++G +EEA+ +F
Sbjct: 434 ALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEMQWETTP 493
Query: 309 --------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
K + ++ ++ Y +V+ L+DMY+KC ++ A F
Sbjct: 494 SKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVF 553
Query: 349 DRTLDKDVVMRSAMTVG----------YGLHGLGEEGWVLFHHI---------------- 382
+D+++ ++M +G GL GL EE V HI
Sbjct: 554 KEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAG 613
Query: 383 ----------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
K+ I PR +HY +++L R G+ + FI MP E +++ + +A
Sbjct: 614 LGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVAMLTRVFNA 673
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 53/259 (20%)
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA--FGSFD--GLLSNE 233
I+ Y KC +D A F+ +D +AMI Y G E + F + G+ +NE
Sbjct: 102 IETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANE 161
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRY--------- 281
+ + L + L K +HG ++K G + L+ + CR
Sbjct: 162 IT-FASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFD 220
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG--------------------- 317
PN WN ++ Y + G +EAV +F K + I
Sbjct: 221 EIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQE 280
Query: 318 ---------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
+ Y + +V++ LIDMYAKCG ++ A F+ K+++ +++ GY +
Sbjct: 281 GIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAM 340
Query: 369 HGLGEEGWVLFHHIRKHGI 387
G E VLF + + +
Sbjct: 341 SGQTREARVLFDEMPERSV 359
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 167/426 (39%), Gaps = 114/426 (26%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
+G+ +HG ++KLG +L+ + + ++IS Y +NG E+A K+F
Sbjct: 119 FREGQQIHGHVLKLGYDLD----------------LYVHTSLISMYVQNGRLEDARKVF- 161
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL- 217
+S +R+ V+ T LI YA G + A FD KDVV +AMI GY
Sbjct: 162 -------DQSSHRD-VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 213
Query: 218 -HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
+ A F ++ +E+ + + +E G+ VH ++ G ++
Sbjct: 214 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIV 273
Query: 273 ISL-----------TAVCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFP-------- 309
+L TA ++ +V WN +I GY +EA+ LF
Sbjct: 274 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333
Query: 310 ----------------------KWMDYYIGK--SEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+W+ YI K N T LIDMYAKCG ++ A
Sbjct: 334 PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQ 393
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP---------------- 389
FD L++ + +AM G+ +HG + +F +RK+ IEP
Sbjct: 394 QVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSG 453
Query: 390 -----RH---------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
RH +HY ++DLL +G A + I M +E + +L
Sbjct: 454 MLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 513
Query: 430 LSAWKI 435
L A K+
Sbjct: 514 LKACKM 519
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 158/417 (37%), Gaps = 131/417 (31%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 187
C +PN T +ISG++ E K+ + I + + +++V T LI+MY KC
Sbjct: 201 CDVKPNSTTYINVISGFSTPEVLPEGRKIHAE-----IVANGFDTDLVVATALINMYGKC 255
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYGL----HEWSAFGSFDGL----LSNEENEYGT 239
GS A FD+ +D+V + MI Y L HE A + L + + +
Sbjct: 256 GSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHE--ALELYQKLDMEGFKRTKATFVS 313
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC----------------- 279
L ++ L QG++VH +++ GL+ E + L+++ A C
Sbjct: 314 ILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD 373
Query: 280 ---------RYQPN--------------------VTLWNAMISGYAKNGYAEEAVKLFP- 309
Y N WNAMI+ Y +NG A A+K+F
Sbjct: 374 AVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFRE 433
Query: 310 ------------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
K + I +SE +NV+V LI+MYA+CG
Sbjct: 434 MTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCG 493
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------- 372
S++ A F +K VV +AM + +G
Sbjct: 494 SLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILF 553
Query: 373 --------EEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
E+GW F + + H + P H+A +VDLL R+G A + + +MP E
Sbjct: 554 VCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFE 610
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 59/275 (21%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHEWSAFG 224
S + + +V LI MY KC S+ A F+ ++D ++VV +AMI Y + S
Sbjct: 36 SRFERDTMVGNALISMYGKCDSLVDARSVFE-SMDWRQRNVVSWNAMIAAYAQNGHSTEA 94
Query: 225 -------SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL-T 276
+ GL ++ CS L QG+ +H + GL+ L +L T
Sbjct: 95 LVLYWRMNLQGLGTDHVTFVSVLGACSS----LAQGREIHNRVFYSGLDSFQSLANALVT 150
Query: 277 AVCRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------PKWMDY 314
R+ + T WNA+I ++++G A+++F P Y
Sbjct: 151 MYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTY 210
Query: 315 Y---------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
I + + +++V T LI+MY KCGS A FD+
Sbjct: 211 INVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKK 270
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+D+V + M Y L+G E L+ + G +
Sbjct: 271 RDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFK 305
>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
Length = 629
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 171/401 (42%), Gaps = 105/401 (26%)
Query: 102 GKIVHGFMIKLGL----ELESDLL-ISLTAVC----------RYQPNVTLRNAMISGYAK 146
G+ +HG ++K GL +E+ L+ + A C + N +AMI+GYA+
Sbjct: 133 GEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQ 192
Query: 147 NGYAEEAVKLF---------PKWMDYY-------------IGKSE--------YRNNVIV 176
NG A+ AV +F P + +GK + + V
Sbjct: 193 NGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYV 252
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS----AFGSFDGL 229
+ L+DMYAKCG + A FD+ + D+V+ +AM+ G+ G HE + A +G+
Sbjct: 253 KSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGI 312
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT------------- 276
+ ++ + L + LE GK +H ++K GL L + + +L+
Sbjct: 313 IPSKST-IASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGM 371
Query: 277 AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334
+V R P +V WN++ISG+++NG A+ LF + + + N I++
Sbjct: 372 SVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM--------KMEGTIPDNITFINI 423
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQH 393
C + GL + GW F + K +G+ PR H
Sbjct: 424 LCACSHM----------------------------GLVDRGWEYFSLMTKDYGLTPRLDH 455
Query: 394 YARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
YA +VD+L+RAG A FI ++ I+ + R +L A +
Sbjct: 456 YACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACR 496
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 52/276 (18%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
+NV V T L++MY K G V A FD ++ S M+ GY + S AF F +
Sbjct: 45 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 104
Query: 230 LS---NEENEY-GTALDCSCDLEF-LEQGKIVHGFMIKLGL----ELESDLL-ISLTAVC 279
L +E++E+ TA+ + + L G+ +HG ++K GL +E+ L+ + A C
Sbjct: 105 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 164
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY----- 315
+ N W+AMI+GYA+NG A+ AV +F P +
Sbjct: 165 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 224
Query: 316 --------IGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+GK + + V + L+DMYAKCG + A FD+ + D+V+
Sbjct: 225 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 284
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA 395
+AM G+ +G EE L+ + K GI P A
Sbjct: 285 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIA 320
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 99/273 (36%), Gaps = 73/273 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFL----------VCYLFDGLFDRTIVFLDLYHLWS 65
VL A LLMG ++HG I G L Y G + +
Sbjct: 120 VLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERN 179
Query: 66 RTEWSAF-------GSFDGLLS-----------NEENEYGTALDCSCDLEFLEQGKIVHG 107
WSA G D +S E + L+ S DL L GK HG
Sbjct: 180 SITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHG 239
Query: 108 FMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGYAKNGYAEE 152
M+KLG E++ L+ + A C Y+ ++ L AM+SG+ +NG EE
Sbjct: 240 LMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEE 299
Query: 153 AVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVLID 182
A+ L+ K + I K V + L
Sbjct: 300 ALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALST 359
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
MY+KCG+++ F R D+DV+ +++I G+
Sbjct: 360 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGF 392
>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Vitis vinifera]
Length = 742
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 132/572 (23%), Positives = 214/572 (37%), Gaps = 171/572 (29%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIVFLDLYHLWS 65
+LKAC +LP + G +H + GF L Y+ G D + D
Sbjct: 56 ILKACSSLP-VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRD 114
Query: 66 RTEWSAFGSFDGLLSNEENEYGT--------------------ALDCSCDLEFLEQGKIV 105
W+ G LS ++ G A+ L +E+G +
Sbjct: 115 SVSWNIM--IHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKM 172
Query: 106 HGFMIKLG-LELES--DLLISLTA-------------VCRYQPNVTLRNAMISGYAKNGY 149
HG++I+ G L++ S + L+S+ A +C + +V + MI GY + G
Sbjct: 173 HGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELFDEMC--ERDVISWSVMIGGYVQTGE 230
Query: 150 AEEAVKLFPKWM-----------------------DYYIGKSEY--------RNNVIVNT 178
A+ A++LF + D +G+S + ++ V
Sbjct: 231 AKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGN 290
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-----WSAFGSFD--GLLS 231
+IDMY+KC + A F+ ++ V +++I G E S F S G +
Sbjct: 291 SIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRA 350
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC--------- 279
+E C ++ Q K +H +I+ G EL + LI + C
Sbjct: 351 DEVTLVNLLQSCKYFVDPF-QCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKL 409
Query: 280 --RYQPNVTL-WNAMISGYAKNGYAEEAVKLF---------------------------- 308
R + T+ W+AMI+G+ G +EA+ LF
Sbjct: 410 FDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADL 469
Query: 309 --PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
KW + V V T ++DMYAKCG + L+ FD+ +K++V AM
Sbjct: 470 KRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAAC 529
Query: 367 GLHGLG-----------------------------------EEGWVLFHH-IRKHGIEPR 390
G++GL EEG F + ++ HG+EP
Sbjct: 530 GMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPG 589
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
+HY+ +VD+L+RAG N A I MP +R
Sbjct: 590 LEHYSCMVDMLSRAGKLNSAMNLIEKMPERMR 621
>gi|354805179|gb|AER41598.1| pentatricopeptide [Oryza glaberrima]
Length = 544
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 36/274 (13%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLL 230
+V+V T L+DMYAKCG V A FD + ++ V +A+IV YG H+ AF F ++
Sbjct: 173 DVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMM 232
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ +E + L D+ + +H + ++ GL Q +
Sbjct: 233 RHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGL----------------QDFLQ 276
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ NA+I Y KNG+ +EA + F + +++ + ++ +A G A
Sbjct: 277 VGNALIMAYGKNGFVQEAKRTFGMI---------HNPDLVTWSSMVSSFAYLGLAKSAID 327
Query: 347 FFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLL 401
FDR L + + +G GL E+G+ F + R + I+P QH A +VDLL
Sbjct: 328 LFDRMLQQGIRADGIAFLGVFSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLL 387
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG A++F++NM + + V A L A ++
Sbjct: 388 GRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRM 421
>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 611
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 162/391 (41%), Gaps = 106/391 (27%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N+MISGY NG A+ AV+L + + +V+ L+D Y + G D A
Sbjct: 166 NSMISGYVSNGLADLAVELLN-----CMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVL 220
Query: 198 DRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCD-------L 247
+ +++ + +I Y G H+ S F ++ E LDC C +
Sbjct: 221 KQIEQPNIISWTTLISSYSKIGEHDMS-LRVFQDMIIREV--VSPDLDCLCSVLVSCRHI 277
Query: 248 EFLEQGKIVHGFMIKLGLELESDL---------LISLTAVC-RYQ-----------PNVT 286
L GK +HG+ G ++E++ L+++ A C R Q ++
Sbjct: 278 GALRSGKEIHGY----GTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIV 333
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKW--MDY------------------------YIGKSE 320
WNAMI G+ + ++A++ F + MD Y+ KS
Sbjct: 334 TWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVCDLQYGNPIHAYVRKSI 393
Query: 321 YRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE------ 373
++V+ V +I MY KCG V A F +KDVV + M G+G+HG G+
Sbjct: 394 TLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLL 453
Query: 374 -----------------------------EGWVLFHHIRK-HGIEPRHQHYARVVDLLAR 403
EG+ LF + + + I PR +HY+ +VD+LAR
Sbjct: 454 KEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLAR 513
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
AG A FI MP+E S+ ALL+A +
Sbjct: 514 AGQFADAVTFIHKMPLEPDKSIWGALLAACR 544
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 30/163 (18%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVK---------------LFPK---------------W 311
QPNV W A+ Y ++G ++ V+ +FPK W
Sbjct: 58 QPNVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIW 117
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ + +N+ V LIDMY KCG+ A + F+ ++D+ ++M GY +GL
Sbjct: 118 IHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGL 177
Query: 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
+ L + +R G EP + ++D + G + A++ +
Sbjct: 178 ADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVL 220
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 85/232 (36%), Gaps = 57/232 (24%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN----- 232
T LI MYA C + A FD+ +V +A+ Y H G +D + N
Sbjct: 34 TKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRH-----GMYDKCVQNYGFMK 88
Query: 233 ------EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQP 283
+ + L L + E G +H +I G E + LI + C
Sbjct: 89 YSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNAR 148
Query: 284 NVTL------------WNAMISGYAKNGYAEEAVKLFP------------KW---MDYYI 316
+ L WN+MISGY NG A+ AV+L W MD Y
Sbjct: 149 SARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYC 208
Query: 317 GKSEY-----------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+ + N+I T LI Y+K G D++ F + ++VV
Sbjct: 209 QMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVV 260
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 125/517 (24%), Positives = 193/517 (37%), Gaps = 112/517 (21%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDR 53
A + P+ T P VL+ C +P MG VH + GF + Y G
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVA 250
Query: 54 TIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTAL--------------------DCS 93
D + W+A G N E E G L S
Sbjct: 251 ARKVFDGMAVTDCISWNAM--IAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVAS 308
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISL----TAVCRY-----------QPNVTLRN 138
L + K +HGF +K G ++ SL T++ R +
Sbjct: 309 GMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWT 368
Query: 139 AMISGYAKNGYAEEAVKLFP------------------------KWMDYYIGKSEYRNN- 173
AMISGY KNG+ ++A++++ +D I E N
Sbjct: 369 AMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNK 428
Query: 174 -----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-----AF 223
V+V L++MYAK +D A F +KDVV S+MI G+ + S F
Sbjct: 429 GFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYF 488
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
G + + AL L GK +H ++++ G+ E Y P
Sbjct: 489 RYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEG-----------YVP 537
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
N A++ Y K G A W + + + +V+ +++ + G D+
Sbjct: 538 N-----ALLDLYVKCGQTSYA------WAQFSVHSEK---DVVSWNIMLSGFVAHGLGDI 583
Query: 344 APMFFDRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVV 398
A F++ ++ D V A+ G+ +GW LFH + K I P +HYA +V
Sbjct: 584 ALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMV 643
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLL+R G A+ I MPI+ +V ALL+ +I
Sbjct: 644 DLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRI 680
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 80/282 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLF-------------------------PKW-----MDYYIGK 167
N M+ GY K G+ EEA+ L+ P W + ++ +
Sbjct: 166 NVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLR 225
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
+ + V V L+ MYAKCG + A FD D + +AMI G+
Sbjct: 226 FGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGH------------ 273
Query: 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
N E E G L F+ L E++ +L+ ++T+V T+
Sbjct: 274 --FENHECEAGLEL-----------------FLTMLENEVQPNLM-TITSV-------TV 306
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ M+S + G+A+E M + K + +V LI MY G + A
Sbjct: 307 ASGMLS---EVGFAKE--------MHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKI 355
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
F R KD + +AM GY +G ++ ++ + H + P
Sbjct: 356 FSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSP 397
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLF-------------------------PKW-----MD 313
+V WN M+ GY K G+ EEA+ L+ P W +
Sbjct: 161 DVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVH 220
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE 373
++ + + + V V L+ MYAKCG + A FD D + +AM G+ + E
Sbjct: 221 AHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECE 280
Query: 374 EGWVLFHHIRKHGIEP 389
G LF + ++ ++P
Sbjct: 281 AGLELFLTMLENEVQP 296
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 160/421 (38%), Gaps = 126/421 (29%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MISGY K G EEA LF + +G E NVI T +I +AK G++ A M+F
Sbjct: 169 NVMISGYWKCGNEEEASTLF-----HVMGDQEISRNVITWTTMITGHAKKGNLKTARMYF 223
Query: 198 DRTLDKDVVMRSAMIVGY--GLHEWSAFGSFDGLLS-----NEENEYGTAL-DCSCDLEF 249
D+ ++ VV +AM+ GY G F+ +LS +E + T + CS +
Sbjct: 224 DKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDP 283
Query: 250 LEQGKIVHGFMIKLGLE---LESDLLISLTAVC----------------RYQPNVTLWNA 290
IV +G L+ + A C +Y+ +V WNA
Sbjct: 284 CLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVP-WNA 342
Query: 291 MIS-------------------------------GYAKNGYAEEAVKLFPK--------- 310
MIS GY +NG + +A+KLF +
Sbjct: 343 MISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKP 402
Query: 311 ----------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
W + ++ + ++ V LI MY++CGS+ A + F
Sbjct: 403 DEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIF 462
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------- 391
+D+V + + G+ HG G E L +++ GIEP
Sbjct: 463 QEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLG 522
Query: 392 --------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM 437
HYA ++D+L RAG A K I +MP+E + +LL+A I
Sbjct: 523 EGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHK 582
Query: 438 Q 438
Q
Sbjct: 583 Q 583
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
V WN MISGY K G EEA LF + +G E NVI T +I +AK G++
Sbjct: 164 TVADWNVMISGYWKCGNEEEASTLF-----HVMGDQEISRNVITWTTMITGHAKKGNLKT 218
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVVDLLA 402
A M+FD+ ++ VV +AM GY G EE LF+ + G ++P + V+ +
Sbjct: 219 ARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCS 278
Query: 403 RAG 405
G
Sbjct: 279 SLG 281
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 279 CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 338
C +PN + ++ M+ K+ +E + L ++ KS Y + V ++ +YAK
Sbjct: 98 CNIKPNTSFYSVMM----KSAGSESMLFL------AHVLKSGYDRDHYVRNGILGIYAKY 147
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
G ++ A FD D+ V + M GY G EE LFH
Sbjct: 148 GPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFH 189
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 167/426 (39%), Gaps = 114/426 (26%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
+G+ +HG ++KLG +L+ + + ++IS Y +NG E+A K+F
Sbjct: 104 FREGQQIHGHVLKLGYDLD----------------LYVHTSLISMYVQNGRLEDARKVFD 147
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL- 217
+ S +R+ V+ T LI YA G + A FD KDVV +AMI GY
Sbjct: 148 Q--------SSHRD-VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 198
Query: 218 -HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
+ A F ++ +E+ + + +E G+ VH ++ G ++
Sbjct: 199 GNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIV 258
Query: 273 ISL-----------TAVCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFP-------- 309
+L TA ++ +V WN +I GY +EA+ LF
Sbjct: 259 NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318
Query: 310 ----------------------KWMDYYIGK--SEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+W+ YI K N T LIDMYAKCG ++ A
Sbjct: 319 PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQ 378
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP---------------- 389
FD L++ + +AM G+ +HG + +F +RK+ IEP
Sbjct: 379 QVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSG 438
Query: 390 -----RH---------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
RH +HY ++DLL +G A + I M +E + +L
Sbjct: 439 MLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSL 498
Query: 430 LSAWKI 435
L A K+
Sbjct: 499 LKACKM 504
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 123/492 (25%), Positives = 200/492 (40%), Gaps = 103/492 (20%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRT-IVFLDLYH 62
A V P+ T ++ A AL +G +VH QI LGF G + T +D+Y
Sbjct: 143 ARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGF-------GAYAFTWSPLVDMYA 195
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
A FD ++ Y T + + +E+ + V M+ + D +
Sbjct: 196 KMGLI-GDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMV------DRDSIT 248
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------------ 158
T M++G +NG EA+ +F
Sbjct: 249 WTT--------------MVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGAL 294
Query: 159 ------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI 212
K + Y ++ Y N+ V + L+DMY+KC S+ LA F R K+++ +AMI
Sbjct: 295 AASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMI 354
Query: 213 VGYGLHEW--SAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
VGYG + A F DG+ N+ G+ + +L LE+G H + GL
Sbjct: 355 VGYGQNGCGEEAVRVFSEMQTDGIKPNDFT-LGSVISSCANLASLEEGAQFHCMALVSGL 413
Query: 266 ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
+P +T+ +A+++ Y K G E+A +LF + M ++ +
Sbjct: 414 ----------------RPYITVSSALVTLYGKCGSIEDAHRLFDE-MPFH--------DQ 448
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHH 381
+ T L+ YA+ G F++ L K V +G GL E+G FH
Sbjct: 449 VSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHS 508
Query: 382 IRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI----P 436
+++ HGI HY ++DL +R+G A +FI MP LLSA ++
Sbjct: 509 MQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDME 568
Query: 437 MQQW--ENMLQT 446
+ +W EN+L+T
Sbjct: 569 IGKWAAENLLKT 580
>gi|223635626|sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31070, mitochondrial; Flags: Precursor
Length = 624
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 119/536 (22%), Positives = 204/536 (38%), Gaps = 144/536 (26%)
Query: 1 MQVAWVAPNGCTP--PLVLKACV-ALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVF 57
+++ + NG T P V+KAC L+G ++H G D + +++
Sbjct: 46 LKIHSLGTNGFTAILPSVIKACAFQQEPFLLGAQLHCLCLKAGADC----DTVVSNSLI- 100
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 117
+Y +SR +++ FD +L + Y + ++ C L + + M G +
Sbjct: 101 -SMYAKFSR-KYAVRKVFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEMYFYGFIPK 158
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177
S+L+ SL A+C + G + + ++F + + + +V+++
Sbjct: 159 SELVASLLALC----------------TRMGSSSKVARMFHALV---LVDERMQESVLLS 199
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237
T L+DMY K A FD+ K+ V +AMI G ++N+ E
Sbjct: 200 TALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMI--------------SGCVANQNYEM 245
Query: 238 GTALDCSCDLEFLEQGKI---------------------VHGFMIKLGLELESDLLIS-L 275
G L + E L ++ +HGF + G + L + +
Sbjct: 246 GVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFM 305
Query: 276 TAVCR--------------YQPNVTLWNAMISGYAKNGYAEEAVKL-------------- 307
T CR +V +W++MISGYA+ G E + L
Sbjct: 306 TMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSV 365
Query: 308 ----------------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
F + I K + +++++ LIDMYAKCGS+ A F
Sbjct: 366 TLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYEL 425
Query: 352 LDKDVVMRSAMTVGYGLHGLG-----------------------------------EEGW 376
+KD+V S+M YGLHG G EE
Sbjct: 426 TEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQ 485
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+F K+ + +HYA ++LL R G + AF+ +NMP++ + +LLSA
Sbjct: 486 TIFTQAGKYHMPVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSA 541
>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 66/214 (30%)
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWM------DYY------------------------IG 317
WNAMI+GY + G EE + L+ + D Y +
Sbjct: 160 WNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGKQAHCVMI 219
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG------- 370
KS+ + NV+VN+ L+DMY KC S+ F+++L+++V+ +A+ GYG HG
Sbjct: 220 KSQIKENVVVNSALMDMYFKCSSLYDGHRVFNKSLNRNVITWTALISGYGQHGRVAEVLV 279
Query: 371 ----------------------------LGEEGWVLFHHI-RKHGIEPRHQHYARVVDLL 401
L EGW F + R +GI+PR QHYA +VDLL
Sbjct: 280 FFSKMKTEGFRPNYVTFLAVISACSHGGLVNEGWEYFMSMTRDYGIQPRGQHYAAMVDLL 339
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG + AF+F+ N P + ALL A ++
Sbjct: 340 GRAGRLHEAFEFVQNSPCGEHSVIWGALLGACRV 373
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 30/111 (27%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWM------DYY------------------------IGK 167
NAMI+GY + G EE + L+ + D Y + K
Sbjct: 161 NAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGKQAHCVMIK 220
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
S+ + NV+VN+ L+DMY KC S+ F+++L+++V+ +A+I GYG H
Sbjct: 221 SQIKENVVVNSALMDMYFKCSSLYDGHRVFNKSLNRNVITWTALISGYGQH 271
>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
Length = 1849
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 63/295 (21%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEEN 235
++D YAKCG++ A F +K +VV ++MI GY H+ A+ F+ + +
Sbjct: 1427 MLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHD-DAYAIFNTMSETDLT 1485
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
+ + + +F +Q + + G++ + ++S+ C + +V +
Sbjct: 1486 TWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQC---- 1541
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+GY A N+V +N IDMY+KCGSV A F + KD
Sbjct: 1542 --HGYVIRAC----------------FNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKD 1583
Query: 356 VVMRSAMTVGYGLHGLGEE-----------------------------------GWVLFH 380
+VM +AM G+ +HG+GEE GW +F+
Sbjct: 1584 LVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFN 1643
Query: 381 HIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I K HG +P + YA VVDLLAR G A+ F+ MPIE ++ LL A +
Sbjct: 1644 SIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACR 1698
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 118/517 (22%), Positives = 190/517 (36%), Gaps = 152/517 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCY-LFDGLFDRTIVFLDLYHLWSR 66
PNG +LK+CVA ++ G +HG LG + C L GL L+LY
Sbjct: 969 PNGQILAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQSLCKGL-------LNLYAKSGA 1021
Query: 67 TEW--SAFGSFD---------------GLLSNEE-----------------NEYGTALDC 92
++ FG D G S+E N A+
Sbjct: 1022 LDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVL 1081
Query: 93 S-CDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC------------RYQ-PNVT 135
C + GK VH ++IK GLE L + LIS+ A C R + +V
Sbjct: 1082 PVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVV 1141
Query: 136 LRNAMISGYAKNGYAEEAVKLF---------PKWMD----------------YYIGKS-- 168
NA+I+G+++N + EEA KLF P + Y GK
Sbjct: 1142 SWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVH 1201
Query: 169 -------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EW 220
E +V V L+ Y + ++ A F +D+V +A+I GY + EW
Sbjct: 1202 CHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEW 1261
Query: 221 ----SAFGSFDGLLSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIK-LGLELESDL-- 271
F F L + + + + L + L+ K +HG++I+ GL ++ +
Sbjct: 1262 LKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGN 1321
Query: 272 -LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------ 312
L+S A C Y + ++ WNA++ + ++G V L WM
Sbjct: 1322 ALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLL-HWMLREGIR 1380
Query: 313 ----------DYYIGKSEYRN------------------NVIVNTVLIDMYAKCGSVDLA 344
YY S + + ++D YAKCG++ A
Sbjct: 1381 PDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYA 1440
Query: 345 PMFFDRTLDK-DVVMRSAMTVGYGLHGLGEEGWVLFH 380
F +K +VV ++M GY ++ + +F+
Sbjct: 1441 VNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAIFN 1477
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 66/293 (22%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMIVGYGL 217
K + Y+ KS ++ + LI MYAKCG V A F+R KDVV +A+I G+
Sbjct: 1093 KSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSE 1152
Query: 218 HEWS--AFGSFDGLL-------------------SNEEN---EYGTALDCSC--DLEFLE 251
++++ AF F +L S EEN YG + C +E +E
Sbjct: 1153 NKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVE 1212
Query: 252 QGKIVHGFM---IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
+++ M +++ ++E + R ++ WNA+I+GYA NG +A++LF
Sbjct: 1213 DVSVINSLMSFYLRI-XQMEKAEFLFRNMKSR---DLVSWNAIIAGYASNGEWLKALELF 1268
Query: 309 PKWMD--------------------------------YYIGKSEYRNNVIVNTVLIDMYA 336
+++ Y I R + V L+ YA
Sbjct: 1269 SEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYA 1328
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
KC A F KD++ +A+ + G L H + + GI P
Sbjct: 1329 KCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRP 1381
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMTVGYGL 368
K + Y+ KS ++ + LI MYAKCG V A F+R KDVV +A+ G+
Sbjct: 1093 KSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSE 1152
Query: 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA----RAGY 406
+ EE + LFH + K I+P + A ++ + A AGY
Sbjct: 1153 NKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGY 1194
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 110/294 (37%), Gaps = 67/294 (22%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMD--------------------------------YYI 165
NA+I+GYA NG +A++LF +++ Y I
Sbjct: 1249 NAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYII 1308
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---------- 215
R + V L+ YAKC A F KD++ +A++ +
Sbjct: 1309 RHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLV 1368
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
L W +G+ + T + + +++ K H + I+ GL L+ D
Sbjct: 1369 NLLHWMLR---EGIRPDSITIL-TIIQYYAAVSRVKKVKETHSYSIRFGL-LQGD----- 1418
Query: 276 TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335
TL N M+ YAK G + AV +F SE RN V N+ +I Y
Sbjct: 1419 -------AXPTLGNGMLDAYAKCGNMKYAVNIFGSL-------SEKRNVVTCNS-MISGY 1463
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
S D A F+ + D+ + M Y + ++ LFH ++ G++P
Sbjct: 1464 VTSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKP 1517
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
N+V +N IDMY+KCGSV A F + KD+VM +AM+ G+ +H
Sbjct: 1551 NDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMH 1597
>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
Length = 735
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 171/401 (42%), Gaps = 105/401 (26%)
Query: 102 GKIVHGFMIKLGL----ELESDLL-ISLTAVC----------RYQPNVTLRNAMISGYAK 146
G+ +HG ++K GL +E+ L+ + A C + N +AMI+GYA+
Sbjct: 239 GEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQ 298
Query: 147 NGYAEEAVKLF---------PKWMDYY-------------IGKSE--------YRNNVIV 176
NG A+ AV +F P + +GK + + V
Sbjct: 299 NGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYV 358
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS----AFGSFDGL 229
+ L+DMYAKCG + A FD+ + D+V+ +AM+ G+ G HE + A +G+
Sbjct: 359 KSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGI 418
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT------------- 276
+ ++ + L + LE GK +H ++K GL L + + +L+
Sbjct: 419 IPSKST-IASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGM 477
Query: 277 AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334
+V R P +V WN++ISG+++NG A+ LF + + + N I++
Sbjct: 478 SVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM--------KMEGTIPDNITFINI 529
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQH 393
C + GL + GW F + K +G+ PR H
Sbjct: 530 LCACSHM----------------------------GLVDRGWEYFSLMTKDYGLTPRLDH 561
Query: 394 YARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
YA +VD+L+RAG A FI ++ I+ + R +L A +
Sbjct: 562 YACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACR 602
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 52/276 (18%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
+NV V T L++MY K G V A FD ++ S M+ GY + S AF F +
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210
Query: 230 LS---NEENEY-GTALDCSCDLEF-LEQGKIVHGFMIKLGL----ELESDLL-ISLTAVC 279
L +E++E+ TA+ + + L G+ +HG ++K GL +E+ L+ + A C
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 270
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY----- 315
+ N W+AMI+GYA+NG A+ AV +F P +
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330
Query: 316 --------IGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+GK + + V + L+DMYAKCG + A FD+ + D+V+
Sbjct: 331 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 390
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA 395
+AM G+ +G EE L+ + K GI P A
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIA 426
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 99/273 (36%), Gaps = 73/273 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFL----------VCYLFDGLFDRTIVFLDLYHLWS 65
VL A LLMG ++HG I G L Y G + +
Sbjct: 226 VLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERN 285
Query: 66 RTEWSAF-------GSFDGLLS-----------NEENEYGTALDCSCDLEFLEQGKIVHG 107
WSA G D +S E + L+ S DL L GK HG
Sbjct: 286 SITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHG 345
Query: 108 FMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGYAKNGYAEE 152
M+KLG E++ L+ + A C Y+ ++ L AM+SG+ +NG EE
Sbjct: 346 LMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEE 405
Query: 153 AVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVLID 182
A+ L+ K + I K V + L
Sbjct: 406 ALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALST 465
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
MY+KCG+++ F R D+DV+ +++I G+
Sbjct: 466 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGF 498
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/464 (22%), Positives = 170/464 (36%), Gaps = 134/464 (28%)
Query: 40 GFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 99
G L Y+ +G D SRTEW A S++ L++
Sbjct: 236 GMLAAYVRNGRIQEARELFD-----SRTEWDAI-SWNALMA------------------- 270
Query: 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
G++ + +E + + Q +V N M+SGYA+ G EA +LF
Sbjct: 271 -------GYVQRSQIEEAQKMFNKMP-----QRDVVSWNTMVSGYARRGDMAEARRLF-- 316
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
+V T ++ YA+ G ++ A FD DK+ V +AM+ Y
Sbjct: 317 -------DVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRR 369
Query: 220 W--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A FD + + T L L++ + + G M
Sbjct: 370 MMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMP---------------- 413
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK------WMDY----------------- 314
Q + W AM++ Y++ G++EE ++LF + W++
Sbjct: 414 ----QKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALE 469
Query: 315 -------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
+ K+ Y V L+ MY KCGS++ A F+ ++DVV + M GY
Sbjct: 470 CGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYA 529
Query: 368 LHGLGEEGWVLFHHIRKHGIEP------------------------------------RH 391
HG G+E +F +RK +P +
Sbjct: 530 RHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKP 589
Query: 392 QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY ++DLL RAG + A + +MP E ++ ALL A +I
Sbjct: 590 EHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRI 633
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 118/285 (41%), Gaps = 41/285 (14%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAV 154
D+E + + + + M + G +++ L + + + + N M++GYA NG +A+
Sbjct: 104 DMEVIRRNRAITAHM-RAGRVPDAERLFAAMP----RRSTSTYNTMLAGYAANGRLPQAL 158
Query: 155 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
F +S R + L+ S+ FD KD V + MI
Sbjct: 159 SFF---------RSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISS 209
Query: 215 YGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274
+ H GL+S + + D + + + + ++ ++ ++ +L S
Sbjct: 210 HANH---------GLVSLARHYF----DLAPEKDAVSWNGMLAAYVRNGRIQEARELFDS 256
Query: 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334
R + + WNA+++GY + EEA K+F K R+ V NT ++
Sbjct: 257 -----RTEWDAISWNALMAGYVQRSQIEEAQKMF--------NKMPQRDVVSWNT-MVSG 302
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
YA+ G + A FD +DV +A+ GY +G+ EE +F
Sbjct: 303 YARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVF 347
>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
Length = 648
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 139/352 (39%), Gaps = 88/352 (25%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV-----MRSAMIVGYGLHEWSAFGSF 226
++ V+ +DMY K G + LA FD +++VV M +A++ G + A+
Sbjct: 152 DDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAYFGL 211
Query: 227 DGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRYQ 282
G A +C + L G+ HGF+ K G + + S+ ++ CR
Sbjct: 212 RGAGGMPNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCM 271
Query: 283 PNVTL------------WNAMISGYAKNGYAEEAVKLF-------PKWMDYYI------- 316
L W +M+ YA+NG EEA ++ + D+ +
Sbjct: 272 GKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTC 331
Query: 317 ----------------GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
+S N+ V + L+DMY KCG + A F +++V +
Sbjct: 332 AGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWN 391
Query: 361 AMTVGYG------------------------------------LHGLGEEGWVLFHHIRK 384
AM GY GL +EG+ LF +++
Sbjct: 392 AMIGGYAHIGDAWNALAVFDEMIMGRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQ 451
Query: 385 H-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GIEPR +HYA VVDLL RAG A++ I MP+ +SV ALL K+
Sbjct: 452 RFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWGALLGGCKM 503
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 144/385 (37%), Gaps = 149/385 (38%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
V L+ +YA C +D A FD ++++DVV +A+I GY
Sbjct: 150 VQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYA------------------- 190
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
+ G++V + +L ++ + N W+AMI+GY
Sbjct: 191 ---------------KSGQVV------VARQLFDEM---------PEKNAVSWSAMITGY 220
Query: 296 AKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNV 325
A+ G EA++LF +W+ Y+ ++ +
Sbjct: 221 AQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDR 280
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG--------------- 370
I+ T LIDMYAKCG V+ A FD LD+DV +++ G HG
Sbjct: 281 ILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNE 340
Query: 371 --------------------LGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNH 409
L EEG +F + +GIEP QHY +VDLL RAG
Sbjct: 341 GVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLED 400
Query: 410 AFKFIMNMPIELRLSVRRALLSAWKI---------------------------------P 436
A + + MP+E V ALL+A ++
Sbjct: 401 AKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYAS 460
Query: 437 MQQWENMLQTIRGIDEGEKTDKRPG 461
QWE++ + +G++E +K K PG
Sbjct: 461 ANQWEDVAKVRKGMEE-KKVKKVPG 484
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 99/247 (40%), Gaps = 61/247 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T +L+AC L L G +H Q LG+ Y F V L HL++
Sbjct: 111 PNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEA-YDF--------VQNGLLHLYASC 161
Query: 68 EW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
SA FDG S + + + +++G+ + + L +
Sbjct: 162 NCMDSARRLFDG---------------SVNRDVVTWTAVINGYAKSGQVVVARQLFDEMP 206
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP--------------------------- 158
+ N +AMI+GYA+ G EA++LF
Sbjct: 207 -----EKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGAL 261
Query: 159 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
+W+ Y+ ++ + I+ T LIDMYAKCG V+ A FD LD+DV +++I G
Sbjct: 262 DQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGL 321
Query: 216 GLHEWSA 222
H SA
Sbjct: 322 ANHGHSA 328
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 161/380 (42%), Gaps = 96/380 (25%)
Query: 145 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
A+NG EA K M + E + +V ++ VLI+ Y+KCG V+LA FD L++
Sbjct: 74 ARNGAVMEAKACHGKTM-----RMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128
Query: 205 VVMRSAMIVGYGLH--EWSAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
+V + MI Y + E A F +G +E C + + LE K+ H
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKL-H 187
Query: 258 GFMIKLGLELE---SDLLISLTAVC-------------RYQPNVTLWNAMISGYAKNGYA 301
+K L+L L+ L A C + + +VT W++M++GY ++
Sbjct: 188 CLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVT-WSSMVAGYVQSKNY 246
Query: 302 EEAVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVL 331
EEA+ L+ K M I KS + +NV V +
Sbjct: 247 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSA 306
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH---------------------- 369
+DMYAKCGS+ + + F +K++ + + + G+ H
Sbjct: 307 VDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 366
Query: 370 -------------GLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
GL EEG F +R +G+ P HY+ +VD+L RAG + A++ I
Sbjct: 367 VTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIK 426
Query: 416 NMPIELRLSVRRALLSAWKI 435
++P E S+ +LL++ ++
Sbjct: 427 SIPFEPTASIWGSLLASCRV 446
>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Glycine max]
Length = 628
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/424 (23%), Positives = 163/424 (38%), Gaps = 146/424 (34%)
Query: 105 VHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTLRNAMISGYAKN 147
+HG M K+GLEL D+ + V Y +V L NAM++G+A+
Sbjct: 154 IHGLMFKVGLEL--DVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQI 211
Query: 148 GYAEEAVKLFPKW------------------------------MDYYIGKSEYRNNVIVN 177
G EEA+ +F + + ++ K Y + V+V+
Sbjct: 212 GRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVS 271
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-----WSAFGSFDGLLSN 232
LIDMY KC V A F+ + D+ ++++ +HE + FD ++ +
Sbjct: 272 NALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIM---SVHERCGDHYGTLRLFDRMMGS 328
Query: 233 EENE-----YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
+ T L L L G+ +HG+M+
Sbjct: 329 SRVQPDLVTVTTVLPACTHLAALMHGREIHGYMV-------------------------- 362
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
++G AK EE+ +F ++V++N L+DMYAKCG++ A M
Sbjct: 363 ----VNGLAK----EESHDVF--------------DDVLLNNALMDMYAKCGNMRDARMV 400
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------------- 382
F +KDV + M GYG+HG G E +F +
Sbjct: 401 FVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMV 460
Query: 383 -----------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
K+G+ P +HY V+D+L RAG A+ ++ MP + R+LL+
Sbjct: 461 KEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLA 520
Query: 432 AWKI 435
A ++
Sbjct: 521 ACRL 524
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 104/257 (40%), Gaps = 65/257 (25%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD--LAPMFFDRTLDKDVVMRSAMIVGYG 216
K + ++ K+ + + + T LI+MY+KC +D L F +K+V +A+I G+
Sbjct: 49 KELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNKNVFAYNALIAGF- 107
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALD----------CSCDLEFLEQGKIVHGFMIKLGLE 266
+A L N+ G A D C D + KI HG M K+GLE
Sbjct: 108 --LANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKI-HGLMFKVGLE 164
Query: 267 LESDLLISLTAVCRYQP-----------------NVTLWNAMISGYAKNGYAEEAVKLFP 309
L D+ + V Y +V LWNAM++G+A+ G EEA+ +F
Sbjct: 165 L--DVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFR 222
Query: 310 KW------------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ + ++ K Y + V+V+ LIDMY KC
Sbjct: 223 RMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCK 282
Query: 340 SVDLAPMFFDRTLDKDV 356
V A F+ + D+
Sbjct: 283 CVGDALSVFEMMDEIDI 299
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 106/274 (38%), Gaps = 85/274 (31%)
Query: 99 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY------------QPNVTLRNAMISG 143
+ G+ VHGF+ K+G E + S+ LI + C+ + ++ N+++S
Sbjct: 249 FDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSV 308
Query: 144 YAKNGYAEEAVKLFPKWMDYY------------------------------------IGK 167
+ + G ++LF + M + K
Sbjct: 309 HERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAK 368
Query: 168 SEYR---NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
E ++V++N L+DMYAKCG++ A M F +KDV + MI GYG+H + A
Sbjct: 369 EESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEA 428
Query: 223 FGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL----ELESDLLI 273
F ++ NE + G CS H M+K GL E+ES +
Sbjct: 429 LDIFSRMCQAQMVPNEISFVGLLSACS------------HAGMVKEGLGFLSEMESKYGV 476
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307
S P++ + +I + G EA L
Sbjct: 477 S--------PSIEHYTCVIDMLCRAGQLMEAYDL 502
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 131/340 (38%), Gaps = 121/340 (35%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWS 221
+ K +R+N+ + +++ +YA CG + A + F++ +DVV + MI + G HE
Sbjct: 154 VEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHE-- 211
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G++D E
Sbjct: 212 --GAYDLFSRMPER---------------------------------------------- 223
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKW------------------------------ 311
NV W +MI+GY + G A+EA+ LF K
Sbjct: 224 --NVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR 281
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ Y + ++ NV ++ LIDMY KCG ++ A F+ ++ VV SAM G +HG
Sbjct: 282 IHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGR 341
Query: 372 GEEGWVLFHHI------------------------------------RKHGIEPRHQHYA 395
EE LF + R +GI P+ +HY
Sbjct: 342 AEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYG 401
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL+RAG + A +FI+NMP++ V ALL A ++
Sbjct: 402 CMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRV 441
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 30/116 (25%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKW------------------------------MD 162
NV +MI+GY + G A+EA+ LF K +
Sbjct: 224 NVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIH 283
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
Y + ++ NV ++ LIDMY KCG ++ A F+ ++ VV SAMI G +H
Sbjct: 284 EYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMH 339
>gi|15235810|ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis thaliana]
gi|7270009|emb|CAB79825.1| putative protein [Arabidopsis thaliana]
gi|332660453|gb|AEE85853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 119/536 (22%), Positives = 204/536 (38%), Gaps = 144/536 (26%)
Query: 1 MQVAWVAPNGCTP--PLVLKACV-ALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVF 57
+++ + NG T P V+KAC L+G ++H G D + +++
Sbjct: 35 LKIHSLGTNGFTAILPSVIKACAFQQEPFLLGAQLHCLCLKAGADC----DTVVSNSLI- 89
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 117
+Y +SR +++ FD +L + Y + ++ C L + + M G +
Sbjct: 90 -SMYAKFSR-KYAVRKVFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEMYFYGFIPK 147
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177
S+L+ SL A+C + G + + ++F + + + +V+++
Sbjct: 148 SELVASLLALC----------------TRMGSSSKVARMFHALV---LVDERMQESVLLS 188
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237
T L+DMY K A FD+ K+ V +AMI G ++N+ E
Sbjct: 189 TALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMI--------------SGCVANQNYEM 234
Query: 238 GTALDCSCDLEFLEQGKI---------------------VHGFMIKLGLELESDLLIS-L 275
G L + E L ++ +HGF + G + L + +
Sbjct: 235 GVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFM 294
Query: 276 TAVCR--------------YQPNVTLWNAMISGYAKNGYAEEAVKL-------------- 307
T CR +V +W++MISGYA+ G E + L
Sbjct: 295 TMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSV 354
Query: 308 ----------------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
F + I K + +++++ LIDMYAKCGS+ A F
Sbjct: 355 TLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYEL 414
Query: 352 LDKDVVMRSAMTVGYGLHGLG-----------------------------------EEGW 376
+KD+V S+M YGLHG G EE
Sbjct: 415 TEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQ 474
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+F K+ + +HYA ++LL R G + AF+ +NMP++ + +LLSA
Sbjct: 475 TIFTQAGKYHMPVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSA 530
>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
Length = 807
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 63/295 (21%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEEN 235
++D YAKCG++ A F +K +VV ++MI GY H+ A+ F+ + +
Sbjct: 434 MLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHD-DAYAIFNTMSETDLT 492
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
+ + + +F +Q + + G++ + ++S+ C + +V +
Sbjct: 493 TWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQC---- 548
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+GY A N+V +N IDMY+KCGSV A F + KD
Sbjct: 549 --HGYVIRAC----------------FNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKD 590
Query: 356 VVMRSAMTVGYGLHGLGEE-----------------------------------GWVLFH 380
+VM +AM G+ +HG+GEE GW +F+
Sbjct: 591 LVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFN 650
Query: 381 HIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I K HG +P + YA VVDLLAR G A+ F+ MPIE ++ LL A +
Sbjct: 651 SIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACR 705
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 151/389 (38%), Gaps = 109/389 (28%)
Query: 100 EQGKIVHGFMIKLGLE---LESDLLISLTAVC------------RYQ-PNVTLRNAMISG 143
+ GK VH ++IK GLE L + LIS+ A C R + +V NA+I+G
Sbjct: 97 DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAG 156
Query: 144 YAKNGYAEEAVKLF---------PKWMD----------------YYIGKS---------E 169
+++N + EEA KLF P + Y GK E
Sbjct: 157 FSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRME 216
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EW----SAFG 224
+V V L+ Y + G ++ A F +D+V +A+I GY + EW F
Sbjct: 217 LVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFS 276
Query: 225 SFDGLLSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKL-GLELESDL---LISLTAV 278
F L + + + + L + L+ K +HG++I+ GL ++ + L+S A
Sbjct: 277 EFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAK 336
Query: 279 CRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-------------- 312
C Y + ++ WNA++ + ++G V L WM
Sbjct: 337 CNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLL-HWMLREGIRPDSITILT 395
Query: 313 --DYYIGKSEYRN------------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
YY S + + ++D YAKCG++ A F
Sbjct: 396 IIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLS 455
Query: 353 DK-DVVMRSAMTVGYGLHGLGEEGWVLFH 380
+K +VV ++M GY ++ + +F+
Sbjct: 456 EKRNVVTCNSMISGYVNSSSHDDAYAIFN 484
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 66/293 (22%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMIVGYGL 217
K + Y+ KS ++ + LI MYAKCG V A F+R KDVV +A+I G+
Sbjct: 100 KSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSE 159
Query: 218 HEWS--AFGSFDGLL-------------------SNEEN---EYGTALDCSC--DLEFLE 251
++++ AF F +L S EEN YG + C +E +E
Sbjct: 160 NKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVE 219
Query: 252 QGKIVHGFM---IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
+++ M +++G +++ L ++ WNA+I+GYA NG +A++LF
Sbjct: 220 DVSVINSLMSFYLRIGQMEKAEFLFRNMK----SRDLVSWNAIIAGYASNGEWLKALELF 275
Query: 309 PKWMD--------------------------------YYIGKSEYRNNVIVNTVLIDMYA 336
+++ Y I R + V L+ YA
Sbjct: 276 SEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYA 335
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
KC A F KD++ +A+ + G L H + + GI P
Sbjct: 336 KCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRP 388
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 57/248 (22%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSFDGL-LSNEEN 235
L+++YAK G++D F +D V+ + ++ G+ HE F + + NE
Sbjct: 19 LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 78
Query: 236 EYGTALDCS---CDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVC---------- 279
+ C + GK VH ++IK GLE L + LIS+ A C
Sbjct: 79 PNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 138
Query: 280 --RYQ-PNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMD-------------- 313
R + +V WNA+I+G+++N + EEA KLF P +
Sbjct: 139 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 198
Query: 314 --YYIGKS---------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y GK E +V V L+ Y + G ++ A F +D+V +A+
Sbjct: 199 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAI 258
Query: 363 TVGYGLHG 370
GY +G
Sbjct: 259 IAGYASNG 266
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMTVGYGL 368
K + Y+ KS ++ + LI MYAKCG V A F+R KDVV +A+ G+
Sbjct: 100 KSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSE 159
Query: 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA----RAGY 406
+ EE + LFH + K I+P + A ++ + A AGY
Sbjct: 160 NKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGY 201
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 134/358 (37%), Gaps = 75/358 (20%)
Query: 80 SNEEN---EYGTALDCSC--DLEFLEQGKIVHGFM---IKLGLELESDLLISLTAVCRYQ 131
S EEN YG + C +E +E +++ M +++G +++ L
Sbjct: 194 SLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMK----S 249
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMD----------------------------- 162
++ NA+I+GYA NG +A++LF +++
Sbjct: 250 RDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKG 309
Query: 163 ---YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
Y I R + V L+ YAKC A F KD++ +A++ + E
Sbjct: 310 IHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFT--E 367
Query: 220 WSAFGSFDGLL--------SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
LL + T + + +++ K H + I+ GL L+ D
Sbjct: 368 SGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGL-LQGD- 425
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331
TL N M+ YAK G + AV +F SE RN V N+ +
Sbjct: 426 -----------AGPTLGNGMLDAYAKCGNMKYAVNIFGSL-------SEKRNVVTCNS-M 466
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
I Y S D A F+ + D+ + M Y + ++ LFH ++ G++P
Sbjct: 467 ISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKP 524
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
N+V +N IDMY+KCGSV A F + KD+VM +AM+ G+ +H
Sbjct: 558 NDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMH 604
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 118/484 (24%), Positives = 180/484 (37%), Gaps = 147/484 (30%)
Query: 96 LEFLEQGKIVHGFMIKLGLELES-------DLLISLTAVCRYQP--------NVTLRNAM 140
L LE GK +HG +++ GL+ ++ + +V R + ++ N M
Sbjct: 919 LNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTM 978
Query: 141 ISGYAKNGYAEEAVKLFPKWM------DYYIGKSEYRN---------------------- 172
ISG A +G E +V +F + D + S R
Sbjct: 979 ISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAG 1038
Query: 173 ---NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG- 228
+ V+T LID+Y+K G ++ A F D+ +AM+ GY + G F
Sbjct: 1039 VVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVS-----GDFPKA 1093
Query: 229 ----LLSNEENEYGT------ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
+L E E A + L L+QGK + ++K G L DL + +
Sbjct: 1094 LRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNL--DLFVISGVL 1151
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAV------KLFPKWMDYY 315
Y P+ W MISG +NG E A+ +L D Y
Sbjct: 1152 DMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEY 1211
Query: 316 I----------------GKSEYRNNVIVN--------TVLIDMYAKCGSVDLAPMFFDRT 351
G+ + N V +N T L+DMYAKCG+++ A F RT
Sbjct: 1212 TFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT 1271
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--------------------------- 384
+ +AM VG HG EE F ++
Sbjct: 1272 NTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAY 1331
Query: 385 ---------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GIEP +HY+ +VD L+RAG A K I +MP E S+ R LL+A ++
Sbjct: 1332 ENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRV 1391
Query: 436 PMQQ 439
+ +
Sbjct: 1392 QVDR 1395
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 103/436 (23%), Positives = 160/436 (36%), Gaps = 84/436 (19%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSF 75
+L+ +A L +G R H +I + G + D ++ T +S GS
Sbjct: 632 ILRHAIAASDLPLGKRAHARILTSG----HHPDRFLTNNLI----------TMYSKCGS- 676
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
LS+ + T D S DL H + G L L S + R+
Sbjct: 677 ---LSSARKLFDTTPDTSRDLVTWNAILSAHADKARDGFHLFRLLRRSFVSATRHTLAPV 733
Query: 136 LRNAMISGYAKNGYAEE----AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
+ ++S A AE AVK+ +W +V V L+++YAK G +
Sbjct: 734 FKMCLLS--ASPSAAESLHGYAVKIGLQW------------DVFVAGALVNIYAKFGRIR 779
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE 248
A + FD +DVV+ + M+ Y GL E+ A LL +E N G D D+
Sbjct: 780 EARVLFDGMGLRDVVLWNVMMKAYVDTGL-EYEAL-----LLFSEFNRTGLRPD---DVT 830
Query: 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ-----PNVTLWNAMISGYAKNGYAEE 303
++V L +L+ L T + Y +V WN +S + + G E
Sbjct: 831 LCTLARVVKSKQNVLEWQLKQ-LKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWE 889
Query: 304 AVKLFPKWMDYYIG------------------------------KSEYRNNVIVNTVLID 333
AV F ++ + +S V V LI+
Sbjct: 890 AVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLIN 949
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH 393
MY K GSV A F + + D+V + M G L GL E +F + + G+ P
Sbjct: 950 MYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFT 1009
Query: 394 YARVVDLLARAGYSNH 409
A V+ + G H
Sbjct: 1010 VASVLRACSSLGGGCH 1025
>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490-like [Glycine max]
Length = 875
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 121/496 (24%), Positives = 188/496 (37%), Gaps = 145/496 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL--------D 59
P+ T +L AC L +L +G ++H IF FL +D +V +
Sbjct: 352 PDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFL---FYDTAVGNALVSFYAKCGYTEE 408
Query: 60 LYHLWSRTEWSAFGSFDGLL-----SNEENEYGTALDCSCDLEF---------------- 98
YH +S S++ + + + + L C L
Sbjct: 409 AYHTFSMISMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCAS 468
Query: 99 ---LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVK 155
+E+ K +H + I+ G L+S TA T+ NA++ Y+K G E A K
Sbjct: 469 LLRVEKVKEIHSYSIRTGS------LLSNTAP-------TVGNAILDAYSKCGNMEYANK 515
Query: 156 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
+F SE RN V N+ LI Y GS A M F + D+ + M+ Y
Sbjct: 516 MFQNL-------SEKRNLVTCNS-LISGYVGLGSHHDANMIFSGMSETDLTTWNLMVRVY 567
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG-KIVHGFMIKLGLELESDLLIS 274
EN DC EQ + H + G++ ++ ++S
Sbjct: 568 A-----------------EN------DCP------EQALGLCHELQAR-GMKPDTVTIMS 597
Query: 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334
L VC +V L + YI +S +++ + + L+D
Sbjct: 598 LLPVCTQMASVHLLSQC---------------------QGYIIRSCFKD-LHLEAALLDA 635
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--- 391
YAKCG + A F + +KD+VM +AM GY +HG+ EE +F H+ K GI+P H
Sbjct: 636 YAKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALWIFSHMLKLGIQPDHIIF 695
Query: 392 ---------------------------------QHYARVVDLLARAGYSNHAFKFIMNMP 418
+ YA VVDLLAR G + A+ + ++P
Sbjct: 696 TSILSACSHAGRVDEGLKIFYSIEKLHGMKPTVEQYACVVDLLARGGRISEAYSLVTSLP 755
Query: 419 IELRLSVRRALLSAWK 434
IE ++ LL A K
Sbjct: 756 IEANANLWGTLLGACK 771
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 143/389 (36%), Gaps = 104/389 (26%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG-----------------L 50
P+ +LK+C AL + +G +HG + G C++ + L
Sbjct: 41 PDHTVLAAILKSCSALLAPNLGRTLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKL 100
Query: 51 FDRTI--------VFLDLYHLWSRTEWSAFGSFDGLLSNEEN-----EYGTALDCSCDLE 97
FD+ + L + ++ + F + S+ E T L L
Sbjct: 101 FDQLSHCDPVVWNIVLSGFSGSNKCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLG 160
Query: 98 FLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRY-------------QPNVTLRNAMI 141
L+ GK VHG++IK G + L + L+S+ A C +V NAMI
Sbjct: 161 DLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMI 220
Query: 142 SGYAKNGYAEEAVKLFP-------------------------KWMDYYIGKS-------- 168
+G A+N E+A LF K + YY G+
Sbjct: 221 AGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDKSVAYYCGRQIHSYVLQW 280
Query: 169 -EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHE 219
E +V V LI +Y K G + A F +D+V +A I GY LH
Sbjct: 281 PELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGYTSNGEWLKALHL 340
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
+ S + LL + C+ L+ L+ GK +H ++ + L TAV
Sbjct: 341 FGNLASLETLLPDSVTMVSILPACA-QLKNLKVGKQIHAYIFR------HPFLFYDTAV- 392
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
NA++S YAK GY EEA F
Sbjct: 393 --------GNALVSFYAKCGYTEEAYHTF 413
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 107/265 (40%), Gaps = 58/265 (21%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLHEWSA 222
Y+ K + + + N L++MYAKCG + FD+ D V+ + ++ G+ G ++ A
Sbjct: 68 YVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKCDA 127
Query: 223 --FGSFDGLLSNEEN-----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLL 272
F + S+ E T L L L+ GK VHG++IK G + L + L
Sbjct: 128 DVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNAL 187
Query: 273 ISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAEEAVKLFP---------- 309
+S+ A C +V WNAMI+G A+N E+A LF
Sbjct: 188 VSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPN 247
Query: 310 ---------------KWMDYYIGKS---------EYRNNVIVNTVLIDMYAKCGSVDLAP 345
K + YY G+ E +V V LI +Y K G + A
Sbjct: 248 YATVANILPVCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAE 307
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG 370
F +D+V +A GY +G
Sbjct: 308 ALFWTMDARDLVTWNAFIAGYTSNG 332
>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial; Flags: Precursor
gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1028
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 139/355 (39%), Gaps = 71/355 (20%)
Query: 99 LEQGKIVHGFMIKLGLELES---DLLISLTAVCR------------YQPNVTLRNAMISG 143
+E G+ +H MIK+GLE S L+ + A C PN + SG
Sbjct: 176 VEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSG 235
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 203
Y K G EEAV +F + D +R + + +I+ Y + G + A + F
Sbjct: 236 YVKAGLPEEAVLVFERMRD-----EGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSP 290
Query: 204 DVVMRSAMIVGYGLHEWSA------FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
DVV + MI G+G F + + + G+ L + L+ G +VH
Sbjct: 291 DVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVH 350
Query: 258 GFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAE 302
IKLGL L+S+ + C + N WNAMI GYA NG +
Sbjct: 351 AEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESH 410
Query: 303 EAVKLF--PKWMDYYIG----------------------------KSEYRNNVIVNTVLI 332
+ ++LF K Y I K + N+ V L+
Sbjct: 411 KVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALV 470
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
DMYAKCG+++ A F+R D+D V + + Y E + LF + GI
Sbjct: 471 DMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGI 525
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 163/419 (38%), Gaps = 106/419 (25%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
L+ G +VH IKLGL L+S+ + C + N NAMI G
Sbjct: 343 LDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRG 402
Query: 144 YAKNGYAEEAVKLFP--KWMDYYIG----------------------------KSEYRNN 173
YA NG + + ++LF K Y I K + N
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKN 462
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFD---- 227
+ V L+DMYAKCG+++ A F+R D+D V + +I Y +E AF F
Sbjct: 463 LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNL 522
Query: 228 -GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY-- 281
G++S+ T C+ + L QGK VH +K GL+ + LI + + C
Sbjct: 523 CGIVSDGACLASTLKACT-HVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIK 581
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV- 330
+ +V NA+I+GY++N EEAV LF + + + SE IV
Sbjct: 582 DARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACH 640
Query: 331 ------------------------------LIDMYAKC-GSVDLAPMFFDRTLDKDVVMR 359
L+ MY G + +F + + K +V+
Sbjct: 641 KPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLW 700
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA---RVVDLLA--RAGYSNHAFKF 413
+ M G+ +G EE + +R G+ P + RV +L+ R G + H+ F
Sbjct: 701 TGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIF 759
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 160/407 (39%), Gaps = 107/407 (26%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
L QGK VH +K GL+ + LI + + C + +V NA+I+G
Sbjct: 545 LYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAG 604
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV------------------------ 179
Y++N EEAV LF + + + SE IV
Sbjct: 605 YSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSE 663
Query: 180 -------LIDMYAKC-GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE----WSAFG 224
L+ MY G + +F + + K +V+ + M+ G+ G +E +
Sbjct: 664 GEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEM 723
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC-- 279
DG+L ++ + T L L L +G+ +H + L EL S+ LI + A C
Sbjct: 724 RHDGVLPDQAT-FVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGD 782
Query: 280 -----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 328
R + NV WN++I+GYAKNGYAE+A+K+F +I E I
Sbjct: 783 MKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDE-----ITF 837
Query: 329 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
++ + G V F+ M +G ++GIE
Sbjct: 838 LGVLTACSHAGKVSDGRKIFE------------MMIG------------------QYGIE 867
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R H A +VDLL R GY A FI ++ + +LL A +I
Sbjct: 868 ARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRI 914
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 35/267 (13%)
Query: 165 IGKSEYRNNVIVN--------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
IGK+ + ++I+ ++D+YAKC V A FD L+KDV ++M+ Y
Sbjct: 78 IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD-FLEKDVTAWNSMLSMYS 136
Query: 217 L--HEWSAFGSFDGLLSNE--ENEYGTALDCS-CDLEF-LEQGKIVHGFMIKLGLELES- 269
SF L N+ N++ ++ S C E +E G+ +H MIK+GLE S
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196
Query: 270 --DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
L+ + A C PN W + SGY K G EEAV +F + D
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRD-- 254
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
+R + + +I+ Y + G + A + F DVV + M G+G G
Sbjct: 255 ---EGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVA 311
Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLA 402
F ++RK ++ V+ +
Sbjct: 312 IEYFFNMRKSSVKSTRSTLGSVLSAIG 338
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 129/352 (36%), Gaps = 86/352 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------- 171
P+V N MISG+ K G A++ F + +
Sbjct: 289 SPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348
Query: 172 -----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+N+ V + L+ MY+KC ++ A F+ +K+ V +AMI GY H
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYA-HNG 407
Query: 221 SAFGSFDGLLSNEENEYG------TALDCSCDLEF-LEQGKIVHGFMIKLGLE---LESD 270
+ + + + + Y T+L +C LE G H +IK L +
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467
Query: 271 LLISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW------ 311
L+ + A C + NVT WN +I Y ++ EA LF +
Sbjct: 468 ALVDMYAKCGALEDARQIFERMCDRDNVT-WNTIIGSYVQDENESEAFDLFKRMNLCGIV 526
Query: 312 ----------------MDYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMF 347
Y GK + ++ + LIDMY+KCG + A
Sbjct: 527 SDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKV 586
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
F + VV +A+ GY + L EE VLF + G+ P +A +V+
Sbjct: 587 FSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVE 637
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 44/200 (22%)
Query: 250 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY-----------QPNVTLWNAMISGY 295
L GK VH + LG++ E L ++ L A C + +VT WN+M+S Y
Sbjct: 76 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEKDVTAWNSMLSMY 135
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT-------------------------- 329
+ G + ++ F + I +++ +++++T
Sbjct: 136 SSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNS 195
Query: 330 ----VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
L+DMYAKC + A F+ +D + V + + GY GL EE ++F +R
Sbjct: 196 YCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDE 255
Query: 386 GIEPRHQHYARVVDLLARAG 405
G P H + V++ R G
Sbjct: 256 GHRPDHLAFVTVINTYIRLG 275
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1724
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 114/479 (23%), Positives = 189/479 (39%), Gaps = 143/479 (29%)
Query: 95 DLEFLEQGKIVHGFMIKLG----LELESDLLISLTAVCRY-----------QPNVTLRNA 139
D + +QG ++H +I G L L + L+I V + +V A
Sbjct: 42 DKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTA 101
Query: 140 MISGYAKNGYAEEAVKLFP------------------------KWMDY------YIGKSE 169
M+SGY++NG E+A LF + +D I K
Sbjct: 102 MVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGR 161
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFD 227
+ N+ V + L+D ++KCG ++ A F +++DVV +AMI GY + ++ +F F
Sbjct: 162 FVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFR 221
Query: 228 GLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCR 280
+L + G+ L S + L +HG + +LG ++ + LLI+
Sbjct: 222 SMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLIN-----A 276
Query: 281 YQPNVTLWNA-----------------MISGYAKNG-YAEEAVKLFPKWMDYYIG----- 317
Y N +L +A +I+GYA G Y+ +A+ LF + IG
Sbjct: 277 YAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVI 336
Query: 318 -------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
K + +V + LIDMYAK G ++ A FD
Sbjct: 337 LCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME 396
Query: 353 DKDVVMRSAMTVGYGLHGLGE-----------------------------------EGWV 377
+K+V+ +++ GY HG G EG
Sbjct: 397 EKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCE 456
Query: 378 LFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
F++ + K+ I+PR +HY+ +VDL AR G A+ + + I+ S+ A+L A I
Sbjct: 457 CFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSI 515
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 168/411 (40%), Gaps = 90/411 (21%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMI-------------------KLGLELESDLLISLTA 126
+ +AL + E L + KIVH +I KLG+ +E+ ++
Sbjct: 1152 FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP 1211
Query: 127 VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 163
QP+ NA+I G+A+N EAVK + +
Sbjct: 1212 ----QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLL 1267
Query: 164 --------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV-- 213
+I + + ++ V LI MYAKCG ++ + FD +K + +AM+
Sbjct: 1268 KHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAAN 1327
Query: 214 ---GYGLHEWSAFGSFDGLLSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
G G FG + N ++ + L + +L LE+G+ +HG +IKLG E S
Sbjct: 1328 AHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFE--S 1385
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
DL ++ NA + Y K G + +K+ P+ I +S N+
Sbjct: 1386 DLHVT--------------NAAMDMYGKCGEMHDVLKMLPQ----PINRSRLSWNI---- 1423
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RK 384
LI +A+ G A F L D V ++ GL +EG + + R+
Sbjct: 1424 -LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTRE 1482
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G+ P +H ++DLL R+G +HA FI MP+ R+LL+A +I
Sbjct: 1483 FGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRI 1533
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 130/339 (38%), Gaps = 96/339 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-------------------------- 171
NAMIS YA +G E+++ F WM + ++
Sbjct: 1017 NAMISAYAHHGLCRESLRCF-HWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV 1075
Query: 172 -----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLH 218
+NV + L+ +Y++ G + A + F ++D++ ++M+ Y GL
Sbjct: 1076 KLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLK 1135
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMI----------------- 261
+ ++++ + +AL + E L + KIVH +I
Sbjct: 1136 ILAELLQMGKVMNHVT--FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTM 1193
Query: 262 --KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD------ 313
KLG+ +E+ ++ QP+ WNA+I G+A+N EAVK + +
Sbjct: 1194 YGKLGMMMEAKKVLQTMP----QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPAN 1249
Query: 314 -------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+I + + ++ V LI MYAKCG ++ + F
Sbjct: 1250 YITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIF 1309
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
D +K + +AM HG GEE +F +R G+
Sbjct: 1310 DGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGV 1348
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 58/291 (19%)
Query: 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207
G++E ++ K + + + LI+MY+K G+++ A FD ++
Sbjct: 753 GFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS 812
Query: 208 RSAMIVGY---GLHEWSAFGSFDGL--LSNEENEYGTA---LDCSCDLEFLEQGKIVHGF 259
S M+ GY GL+E A G F + L E N + A CS ++G VHGF
Sbjct: 813 WSTMLSGYVRVGLYE-EAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGF 871
Query: 260 MIKLGLELESDLLISLTAVCRYQP-----------------NVTLWNAMISGYAKNGYAE 302
++K G + D+ + V Y NV W +++ GY+ +G
Sbjct: 872 VVKTG--ILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPG 929
Query: 303 EAVKLFPKWMDYYIGKSE------------------------------YRNNVIVNTVLI 332
E + ++ + + ++ + ++V V LI
Sbjct: 930 EVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLI 989
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
M++ SV+ A FD + D++ +AM Y HGL E FH +R
Sbjct: 990 SMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMR 1040
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 69/326 (21%)
Query: 131 QPNVTLRNAMISGYAKNGY-AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+PN + ++I+ +++GY A+E ++ ++ K+ +V V T L+ Y G
Sbjct: 842 EPNGFMVASLITACSRSGYMADEGFQVHG-----FVVKTGILGDVYVGTALVHFYGSIGL 896
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL-----------SNEENEYG 238
V A F+ D +VV ++++VGY S G+ +L S +N +
Sbjct: 897 VYNAQKLFEEMPDHNVVSWTSLMVGY-----SDSGNPGEVLNVYQRMRQEGVSGNQNTFA 951
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------------QP 283
T LE G V G +I+ G E + SL ++ +
Sbjct: 952 TVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNEC 1011
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------------- 322
++ WNAMIS YA +G E+++ F WM + ++
Sbjct: 1012 DIISWNAMISAYAHHGLCRESLRCF-HWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGI 1070
Query: 323 ----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+NV + L+ +Y++ G + A + F ++D++ ++M Y G
Sbjct: 1071 HGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKC 1130
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVV 398
+G + + + G H +A +
Sbjct: 1131 LDGLKILAELLQMGKVMNHVTFASAL 1156
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 126/322 (39%), Gaps = 68/322 (21%)
Query: 6 VAPNGCTPPLVLKACVALPSLLM-GPRVHGQIFSLGF---------LVC----------- 44
+ N T VL AC A LL G +H I GF L+
Sbjct: 1246 IPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSS 1305
Query: 45 -YLFDGLFDRT------IVFLDLYHLWSRTEWSAFGSFDGLLSN-EENEYGTALDCSCDL 96
Y+FDGL +++ +V + +H FG + N ++ + L + +L
Sbjct: 1306 NYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANL 1365
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL 156
LE+G+ +HG +IKLG ESDL ++ NA + Y K G + +K+
Sbjct: 1366 AVLEEGQQLHGLVIKLG--FESDLHVT--------------NAAMDMYGKCGEMHDVLKM 1409
Query: 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD--------VVMR 208
P+ I +S N +LI +A+ G A F L V +
Sbjct: 1410 LPQ----PINRSRLSWN-----ILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLL 1460
Query: 209 SAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL-EQGKIVH--GFMIKLGL 265
SA G + E A+ +D ++ E + C C ++ L G++ H GF+ ++ +
Sbjct: 1461 SACNHGGLVDEGLAY--YDS-MTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPV 1517
Query: 266 ELESDLLISLTAVCRYQPNVTL 287
SL A CR N+ L
Sbjct: 1518 PPNDLAWRSLLAACRIHGNLEL 1539
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%)
Query: 299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
G++E ++ K + + + LI+MY+K G+++ A FD ++
Sbjct: 753 GFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS 812
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
S M GY GL EE LF + G+EP A ++ +R+GY
Sbjct: 813 WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGY 860
>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490-like [Vitis vinifera]
Length = 868
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 63/295 (21%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGY---GLHEWSAFGSFDGLLSNEEN 235
++D YAKCG++ A F +K +VV ++MI GY H+ A+ F+ + +
Sbjct: 495 MLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHD-DAYAIFNTMSETDLT 553
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
+ + + +F +Q + + G++ + ++S+ C + +V +
Sbjct: 554 TWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQC---- 609
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+GY A N+V +N IDMY+KCGSV A F + KD
Sbjct: 610 --HGYVIRAC----------------FNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKD 651
Query: 356 VVMRSAMTVGYGLHGLGEE-----------------------------------GWVLFH 380
+VM +AM G+ +HG+GEE GW +F+
Sbjct: 652 LVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFN 711
Query: 381 HIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I K HG +P + YA VVDLLAR G A+ F+ MPIE ++ LL A +
Sbjct: 712 SIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACR 766
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 119/517 (23%), Positives = 191/517 (36%), Gaps = 152/517 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCY-LFDGLFDRTIVFLDLYHLWSR 66
PNG +LK+CVA+ ++ G +HG LG + C L GL L+LY
Sbjct: 37 PNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLCKGL-------LNLYAKSGA 89
Query: 67 TEW--SAFGSFD---------------GLLSNEE-----------------NEYGTALDC 92
++ FG D G S+E N A+
Sbjct: 90 LDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVL 149
Query: 93 SCDLEFLEQ-GKIVHGFMIKLGLE---LESDLLISLTAVC------------RYQ-PNVT 135
E GK VH ++IK GLE L + LIS+ A C R + +V
Sbjct: 150 PVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVV 209
Query: 136 LRNAMISGYAKNGYAEEAVKLF---------PKWMD----------------YYIGKS-- 168
NA+I+G+++N + EEA KLF P + Y GK
Sbjct: 210 SWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVH 269
Query: 169 -------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EW 220
E +V V L+ Y + G ++ A F +D+V +A+I GY + EW
Sbjct: 270 CHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEW 329
Query: 221 ----SAFGSFDGLLSNEENEYG--TALDCSCDLEFLEQGKIVHGFMIKL-GLELESDL-- 271
F F L + + + + L + L+ K +HG++I+ GL ++ +
Sbjct: 330 LKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGN 389
Query: 272 -LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------ 312
L+S A C Y + ++ WNA++ + ++G V L WM
Sbjct: 390 ALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLL-HWMLREGIR 448
Query: 313 ----------DYYIGKSEYRN------------------NVIVNTVLIDMYAKCGSVDLA 344
YY S + + ++D YAKCG++ A
Sbjct: 449 PDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYA 508
Query: 345 PMFFDRTLDK-DVVMRSAMTVGYGLHGLGEEGWVLFH 380
F +K +VV ++M GY ++ + +F+
Sbjct: 509 VNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFN 545
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 66/293 (22%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMIVGYGL 217
K + Y+ KS ++ + LI MYAKCG V A F+R KDVV +A+I G+
Sbjct: 161 KSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSE 220
Query: 218 HEWS--AFGSFDGLL-------------------SNEEN---EYGTALDCSC--DLEFLE 251
++++ AF F +L S EEN YG + C +E +E
Sbjct: 221 NKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVE 280
Query: 252 QGKIVHGFM---IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF 308
+++ M +++G +++ L ++ WNA+I+GYA NG +A++LF
Sbjct: 281 DVSVINSLMSFYLRIGQMEKAEFLFRNMK----SRDLVSWNAIIAGYASNGEWLKALELF 336
Query: 309 PKWMD--------------------------------YYIGKSEYRNNVIVNTVLIDMYA 336
+++ Y I R + V L+ YA
Sbjct: 337 SEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYA 396
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
KC A F KD++ +A+ + G L H + + GI P
Sbjct: 397 KCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRP 449
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 51/205 (24%)
Query: 253 GKIVHGFMIKLGLELESDL---LISLTA------VCRY------QPNVTLWNAMISGYAK 297
G ++HG+ +KLG L L++L A C Q + +WN ++SG A
Sbjct: 58 GSVLHGYALKLGHVSCQSLCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAG 117
Query: 298 -NGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVI 326
+ E ++LF K + Y+ KS ++ +
Sbjct: 118 FQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTL 177
Query: 327 VNTVLIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
LI MYAKCG V A F+R KDVV +A+ G+ + EE + LFH + K
Sbjct: 178 AGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKG 237
Query: 386 GIEPRHQHYARVVDLLA----RAGY 406
I+P + A ++ + A AGY
Sbjct: 238 PIQPNYATIASILPVCASLEENAGY 262
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 134/358 (37%), Gaps = 75/358 (20%)
Query: 80 SNEEN---EYGTALDCSC--DLEFLEQGKIVHGFM---IKLGLELESDLLISLTAVCRYQ 131
S EEN YG + C +E +E +++ M +++G +++ L
Sbjct: 255 SLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMK----S 310
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMD----------------------------- 162
++ NA+I+GYA NG +A++LF +++
Sbjct: 311 RDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKG 370
Query: 163 ---YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
Y I R + V L+ YAKC A F KD++ +A++ + E
Sbjct: 371 IHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFT--E 428
Query: 220 WSAFGSFDGLL--------SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
LL + T + + +++ K H + I+ GL L+ D
Sbjct: 429 SGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGL-LQGD- 486
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331
TL N M+ YAK G + AV +F SE RN V N+ +
Sbjct: 487 -----------AGPTLGNGMLDAYAKCGNMKYAVNIFGSL-------SEKRNVVTCNS-M 527
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
I Y S D A F+ + D+ + M Y + ++ LFH ++ G++P
Sbjct: 528 ISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKP 585
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
N+V +N IDMY+KCGSV A F + KD+VM +AM+ G+ +H
Sbjct: 619 NDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMH 665
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 141/359 (39%), Gaps = 91/359 (25%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG 224
K+ Y +V + T LI +Y KC + A FD ++VV +AMI Y + A
Sbjct: 90 KTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALN 149
Query: 225 SFDGLLSN--EENEYGTAL---DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV- 278
F +L + E N + A C L F E G+ +H IK E + SL +
Sbjct: 150 LFVEMLRSDTEPNHFTFATILTSCYGSLGF-ETGRQIHSIAIKRNYESHMFVGSSLLDMY 208
Query: 279 --------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------- 309
C + +V A+ISGYA+ G EEA+KLF
Sbjct: 209 AKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYA 268
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
K + ++ +S + V++ LIDMY+KCG+V A FD ++
Sbjct: 269 SVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER 328
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIR------------------------------- 383
+ +AM VGY HG+ E LF +R
Sbjct: 329 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI 388
Query: 384 -------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K GIEP HY VVDLL RAG AF FI MP ++ +LL + ++
Sbjct: 389 FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRV 447
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 37/213 (17%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFP----------------------------- 158
C + +V A+ISGYA+ G EEA+KLF
Sbjct: 223 CLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNH 282
Query: 159 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
K + ++ +S + V++ LIDMY+KCG+V A FD ++ + +AM+VGY
Sbjct: 283 GKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSK 342
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
H + L EEN+ D L L HG + +GLE+ +++
Sbjct: 343 HGMAREVLELFKLMREENK--VKPDSITYLAVL--SGCSHGQLEDMGLEIFYNMVNGKDG 398
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ +P++ + ++ + G EEA K
Sbjct: 399 I---EPDIGHYGCVVDLLGRAGRVEEAFDFIKK 428
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 108/270 (40%), Gaps = 85/270 (31%)
Query: 250 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCR----------------YQPNVTLWNA 290
L GK VHG ++K G E + L+ + CR Y+ + W+A
Sbjct: 26 LNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSA 85
Query: 291 MISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSE 320
MI GY + G + +A+ LF KW++ Y+ K
Sbjct: 86 MIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKER 145
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+ NV ++ LIDM+AKCG VD A F ++++V +++ G +HG G E +F
Sbjct: 146 VQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFE 205
Query: 381 HIRKHGIEP------------------------------------RHQHYARVVDLLARA 404
+ + G+ P + +HY +VD+L RA
Sbjct: 206 EMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRA 265
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
G A KF+ MPI+ V R L++A +
Sbjct: 266 GLVKEALKFVQEMPIDPNPVVWRTLINACR 295
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 49/169 (28%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCR----------------YQPNVTLRNA 139
L GK VHG ++K G E + L+ + CR Y+ + +A
Sbjct: 26 LNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSA 85
Query: 140 MISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKSE 169
MI GY + G + +A+ LF KW++ Y+ K
Sbjct: 86 MIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKER 145
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ NV ++ LIDM+AKCG VD A F ++++V +++I G +H
Sbjct: 146 VQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMH 194
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/448 (24%), Positives = 175/448 (39%), Gaps = 115/448 (25%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 136
GLL N + L L+ ++G+ +HG ++KLG EL+ + +
Sbjct: 98 GLLPNSYT-FPFLLKSCAKLKVSKEGQQIHGHVLKLGYELD----------------LYV 140
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
++IS Y KNG ++A K+F S +R+ V+ T LI YA G ++ A
Sbjct: 141 HTSLISMYVKNGRWKDAHKVFDG--------SSHRD-VVSYTALITGYASRGYIESAQKM 191
Query: 197 FDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFL 250
FD KDVV +A+I GY + A F ++ +E+ T + +
Sbjct: 192 FDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSI 251
Query: 251 EQGKIVHGFMIKLGLELESDLLISL-----------TAVCRYQ----PNVTLWNAMISGY 295
+ G+ VH ++ GL ++ +L TA +Q +V WN MI GY
Sbjct: 252 QLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGY 311
Query: 296 AKNGYAEEAVKLFP------------------------------KWMDYYIGK--SEYRN 323
+EA+ LF +W+ YI K N
Sbjct: 312 THLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTN 371
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ T LIDMYAKCG ++ A F+ + + +AM G+ +HG + +F +R
Sbjct: 372 ASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMR 431
Query: 384 KHGIEP------------------------------------RHQHYARVVDLLARAGYS 407
K+GIEP + +HY ++DLL G
Sbjct: 432 KNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLF 491
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAWKI 435
A + I M +E + +LL A K+
Sbjct: 492 KEAEEMINTMTMEPDGVIWCSLLKACKM 519
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 116/306 (37%), Gaps = 41/306 (13%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V P+ T V+ AC S+ +G +VH I G +DLY
Sbjct: 231 VKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHG------LGSNLKIVNALIDLYSKCG 284
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
E +A G F GL + + + T + L ++ ++ M++ G ++S+
Sbjct: 285 EVE-TACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSIL 343
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK--SEYRNNVIVNTVLIDM 183
C A+ F +W+ YI K N + T LIDM
Sbjct: 344 PAC---------------------AQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDM 382
Query: 184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDC 243
YAKCG ++ A F+ + + +AMI G+ +H A +FD +N G D
Sbjct: 383 YAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMH-GRANAAFDIFSRMRKN--GIEPD- 438
Query: 244 SCDLEFLE-QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
D+ F+ H M+ LG + S+T + P + + MI G +
Sbjct: 439 --DITFVGLLSACSHSGMLDLGRR----IFRSMTQNYKITPKLEHYGCMIDLLGHLGLFK 492
Query: 303 EAVKLF 308
EA ++
Sbjct: 493 EAEEMI 498
>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 752
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 124/539 (23%), Positives = 204/539 (37%), Gaps = 163/539 (30%)
Query: 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFD------ 52
N T ++L+AC + ++G ++H + GF + Y G FD
Sbjct: 167 NEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVF 226
Query: 53 --------RTIVFLDLYHLWSRTEWSAFGSFDGLLSN--EENEYG-TALDCSCDLEF-LE 100
R + F+ L + + A F LL++ E +Y T + +C+ + +E
Sbjct: 227 DSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVE 286
Query: 101 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160
+GK + G K G E+ ++ NA+I+ Y +G +EA ++F
Sbjct: 287 EGKQLQGLAFKYGFLSET----------------SVGNAIITMYGNSGMPKEAERMF--- 327
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
S N+I T LI Y++ G YG
Sbjct: 328 ------SSMSEKNLISWTALISGYSRSG--------------------------YGKKAV 355
Query: 221 SAF-GSFDGLLSNEENEYGTA-LDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISL 275
AF G D L N ++ TA LDC D LE G +HGF++KLG + ++ L+ L
Sbjct: 356 DAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDL 415
Query: 276 TAVCR------------YQPNVTLWNAMISGY-AKNGYAEEAVKLF---------PKWMD 313
A C + +NA+++G+ +G E+ + LF P +
Sbjct: 416 YAKCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVT 475
Query: 314 Y---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
+ Y K+ + N+ V +I MYAKCGS++ A F+
Sbjct: 476 FSRLLSLLANQASLEKGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMN 535
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR----------------------------- 383
+D + +A+ Y LHG ++ LF ++
Sbjct: 536 CRDSISWNALISAYALHGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGIC 595
Query: 384 -------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
K+GI+P +HYA + DLL RAGY + A I P + R L++ K+
Sbjct: 596 LFNLMEPKYGIKPLLEHYACMADLLGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKL 654
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 50/235 (21%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
Y+ K+ +++ ++++Y K +DLA FDR ++ + +++I GY
Sbjct: 92 YLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYL------- 144
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
E+N++ +A + G M K G + C
Sbjct: 145 ---------EDNDFQSAFS-------------IAGDMHKFGENFNEHTCTVILQACSSPD 182
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+ L + K+G+ E NV V T LI MY K G D+
Sbjct: 183 DRILGEQIHCFVIKSGFDE---------------------NVFVGTSLIAMYTKSGFFDV 221
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
A FD KD+ + M + YG G G + +F ++ G EP + ++
Sbjct: 222 AEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNII 276
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 132/605 (21%), Positives = 215/605 (35%), Gaps = 171/605 (28%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-------VCYLFDGLFDR 53
M+ + P+ T PLV A L +L +G VH G L V ++ R
Sbjct: 98 MRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYAR 157
Query: 54 TIVFLDLYHLWSR------TEWSAF----------------------GSFDGLLSNEENE 85
D L+ W+A + DG
Sbjct: 158 CGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRT 217
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQPNVTLR----- 137
+ L+ L L G +HGF +K G+ ++ SL ++ C + +
Sbjct: 218 MESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP 277
Query: 138 -------NAMISGYAKNGYAEEAVKLF------------------------------PKW 160
++I Y + G+AE+AV+LF K
Sbjct: 278 EKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKT 337
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG---- 216
I + + ++V++ LI MYAKC VD+A F +D S+M+V Y
Sbjct: 338 FHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGL 397
Query: 217 ------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK-LGLELES 269
L+ F D + N + + L L G+ H + IK L E S
Sbjct: 398 DLKCLELYREMQFRDKDEF-EYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSS 456
Query: 270 --DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD-- 313
+ LIS+ C +V W+A+IS Y+ G++++A+ L+ + +
Sbjct: 457 VANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEG 516
Query: 314 ----------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
++ ++ + T L+DMY KCG + +A
Sbjct: 517 VKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIAR 576
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG----------------------------------- 370
FD L++DVV + M GYG+HG
Sbjct: 577 KMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAG 636
Query: 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
L ++G LF + ++ +EP +HYA +VDLL ++G+ A + MPIE + LL
Sbjct: 637 LVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLL 696
Query: 431 SAWKI 435
A K+
Sbjct: 697 GACKM 701
>gi|302761980|ref|XP_002964412.1| hypothetical protein SELMODRAFT_81698 [Selaginella moellendorffii]
gi|300168141|gb|EFJ34745.1| hypothetical protein SELMODRAFT_81698 [Selaginella moellendorffii]
Length = 504
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/452 (24%), Positives = 179/452 (39%), Gaps = 114/452 (25%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGL--------ELESDLLISLTAVC------------RYQ 131
CS DL L +GK VHG +++ L L +++I + C
Sbjct: 20 CS-DLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKD 78
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
NV ++IS + G+ +A+ LF + I ++ + ++ +V T ++ MY+KC S++
Sbjct: 79 QNVVAWTSLISAFTFAGHFGDAMVLF---VHECIVEAGFGSHTVVGTAVLGMYSKCRSLE 135
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEWS-AFGSFDGLLSNE----ENEYGTALDCSCD 246
LA F+ D + +AMI Y + S A F ++ + +AL+ D
Sbjct: 136 LARAAFESIEAHDRISYTAMITAYSENSSSEALVLFHKMVLEGVALCDITLASALNACGD 195
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLWN 289
L GK++HG + G LESD+++ V Y Q +V LW
Sbjct: 196 PAMLRHGKVIHGMAGEKG--LESDMVVGTALVNMYSKCGEIEQAKVVFDRMIQRDVVLWT 253
Query: 290 AMISGYAKNGYAEEAVKLF----------PKWMDYYI--------------------GKS 319
AMI GYA+NG A LF P + Y S
Sbjct: 254 AMIGGYAENGQPRLAFDLFRQMQQQSSVRPNRVTYLTLANACSEKAALPDARFLHAKISS 313
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH---------- 369
E ++ + + ++ MY +CGSV A F + K V +++ + +
Sbjct: 314 EKIDDPVTVSAVVSMYGRCGSVGDARQAFKQLKHKCAVAWNSIIAVHTQNGDADESLELL 373
Query: 370 -------------------------GLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLAR 403
GL ++G +F IR H +EP +HY+ V D+L R
Sbjct: 374 GRMLLDGSKPDRVTFISVLSMCSHAGLVKQGCEIFTSIRDDHRLEPAMEHYSCVTDMLGR 433
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
AG+ A F+ M +E + LL A K+
Sbjct: 434 AGWLEEAENFVKKMGLEPDDGIWACLLGACKM 465
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 49/173 (28%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------------- 130
+AL+ D L GK++HG + G LESD+++ V Y
Sbjct: 187 ASALNACGDPAMLRHGKVIHGMAGEKG--LESDMVVGTALVNMYSKCGEIEQAKVVFDRM 244
Query: 131 -QPNVTLRNAMISGYAKNGYAEEAVKLF----------PKWMDYYI-------------- 165
Q +V L AMI GYA+NG A LF P + Y
Sbjct: 245 IQRDVVLWTAMIGGYAENGQPRLAFDLFRQMQQQSSVRPNRVTYLTLANACSEKAALPDA 304
Query: 166 ------GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI 212
SE ++ + + ++ MY +CGSV A F + K V +++I
Sbjct: 305 RFLHAKISSEKIDDPVTVSAVVSMYGRCGSVGDARQAFKQLKHKCAVAWNSII 357
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 138/352 (39%), Gaps = 90/352 (25%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL-- 230
+ V L+ +A CG VD + F T KDVV +A+I G L A + + +
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGC-LRNGRAVEALECFVEM 195
Query: 231 --SNEENEYGTALDCSCDLEFLEQ---GKIVHGFMIKLGLEL----ESDLLISLTAVCRY 281
S E + T + C L G+ VHGF ++ G + L+ + + C Y
Sbjct: 196 RSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGY 255
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
N+ W A+I+GY + +EA+K+F
Sbjct: 256 CDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTA 315
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+W+ Y+ +S+ N + T L+DMY+KCG VD A + F++ KDV
Sbjct: 316 CAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPW 375
Query: 360 SAMTVGYGLHG-----------------------------------LGEEGWVLFH-HIR 383
+AM G + G L +EG LF I
Sbjct: 376 TAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC 435
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +EP HY +VDLL RAG A KFI +MP+E V AL S I
Sbjct: 436 DYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMI 487
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 144/385 (37%), Gaps = 149/385 (38%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
V L+ +YA C +D A FD ++++DVV +A+I GY
Sbjct: 125 VQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYA------------------- 165
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
+ G++V + +L ++ + N W+AMI+GY
Sbjct: 166 ---------------KSGQVV------VARQLFDEM---------PEKNAVSWSAMITGY 195
Query: 296 AKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNNV 325
A+ G EA++LF +W+ Y+ ++ +
Sbjct: 196 AQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDR 255
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG--------------- 370
I+ T LIDMYAKCG V+ A FD LD+DV +++ G HG
Sbjct: 256 ILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNE 315
Query: 371 --------------------LGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNH 409
L EEG +F + +GIEP QHY +VDLL RAG
Sbjct: 316 GVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLED 375
Query: 410 AFKFIMNMPIELRLSVRRALLSAWKI---------------------------------P 436
A + + MP+E V ALL+A ++
Sbjct: 376 AKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYAS 435
Query: 437 MQQWENMLQTIRGIDEGEKTDKRPG 461
QWE++ + +G++E +K K PG
Sbjct: 436 ANQWEDVAKVRKGMEE-KKVKKVPG 459
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 99/247 (40%), Gaps = 61/247 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T +L+AC L L G +H Q LG+ Y F V L HL++
Sbjct: 86 PNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEA-YDF--------VQNGLLHLYASC 136
Query: 68 EW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125
SA FDG S + + + +++G+ + + L +
Sbjct: 137 NCMDSARRLFDG---------------SVNRDVVTWTAVINGYAKSGQVVVARQLFDEMP 181
Query: 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP--------------------------- 158
+ N +AMI+GYA+ G EA++LF
Sbjct: 182 -----EKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGAL 236
Query: 159 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
+W+ Y+ ++ + I+ T LIDMYAKCG V+ A FD LD+DV +++I G
Sbjct: 237 DQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGL 296
Query: 216 GLHEWSA 222
H SA
Sbjct: 297 ANHGHSA 303
>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
Length = 735
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 171/401 (42%), Gaps = 105/401 (26%)
Query: 102 GKIVHGFMIKLGL----ELESDLL-ISLTAVC----------RYQPNVTLRNAMISGYAK 146
G+ +HG ++K GL +E+ L+ + A C + N +AMI+GYA+
Sbjct: 239 GEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQ 298
Query: 147 NGYAEEAVKLF---------PKWMDYY-------------IGKSE--------YRNNVIV 176
NG A+ AV +F P + +GK + + V
Sbjct: 299 NGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYV 358
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWS----AFGSFDGL 229
+ L+DMYAKCG + A FD+ + D+V+ +AM+ G+ G HE + A +G+
Sbjct: 359 KSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGI 418
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT------------- 276
+ ++ + L + LE GK +H ++K GL L + + +L+
Sbjct: 419 IPSKST-IASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGM 477
Query: 277 AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334
+V R P +V WN++ISG+++NG A+ LF + + + N I++
Sbjct: 478 SVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEM--------KMEGTIPDNITFINI 529
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQH 393
C + GL + GW F + K +G+ PR H
Sbjct: 530 LCACSHM----------------------------GLVDRGWEYFSLMTKDYGLTPRLDH 561
Query: 394 YARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
YA +VD+L+RAG A FI ++ I+ + R +L A +
Sbjct: 562 YACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACR 602
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 52/270 (19%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
+NV V T L++MY K G V A FD ++ S M+ GY + S AF F +
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210
Query: 230 LS---NEENEY-GTALDCSCDLEF-LEQGKIVHGFMIKLGL----ELESDLL-ISLTAVC 279
L +E++E+ TA+ + + L G+ +HG ++K GL +E+ L+ + A C
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 270
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY----- 315
+ N W+AMI+GYA+NG A+ AV +F P +
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330
Query: 316 --------IGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+GK + + V + L+DMYAKCG + A FD+ + D+V+
Sbjct: 331 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 390
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+AM G+ +G EE L+ + K GI P
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIP 420
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 104/273 (38%), Gaps = 73/273 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFL----VCYLFDGLFDRTIVFLDLYHLWSRTE--- 68
VL A LLMG ++HG I G L V ++ + +H++ +
Sbjct: 226 VLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERN 285
Query: 69 ---WSAF-------GSFDGLLS-----------NEENEYGTALDCSCDLEFLEQGKIVHG 107
WSA G D +S E + L+ S DL L GK HG
Sbjct: 286 SITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHG 345
Query: 108 FMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGYAKNGYAEE 152
M+KLG E++ L+ + A C Y+ ++ L AM+SG+ +NG EE
Sbjct: 346 LMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEE 405
Query: 153 AVKLFP------------------------------KWMDYYIGKSEYRNNVIVNTVLID 182
A+ L+ K + I K V + L
Sbjct: 406 ALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALST 465
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
MY+KCG+++ F R D+DV+ +++I G+
Sbjct: 466 MYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGF 498
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 124/517 (23%), Positives = 194/517 (37%), Gaps = 112/517 (21%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDR 53
A P+ T P VL++C +P L MG VH + G + Y G +
Sbjct: 189 AGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEA 248
Query: 54 TIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTAL--------------------DCS 93
D L W+A G N E E G L S
Sbjct: 249 ARKVFDGMSLTDCISWNAM--IAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVAS 306
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV----------CRYQPNVTLRNAM--- 140
L L+ K +H +K G + SL + C + R+AM
Sbjct: 307 GLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWT 366
Query: 141 --ISGYAKNGYAEEAVKLFP------------------------KWMDYYIGKSEYRNN- 173
ISGY KNG+ ++A++++ +D I E +
Sbjct: 367 AMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSK 426
Query: 174 -----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSF 226
++V L++MYAK ++ A F DKDV+ S+MI G+ + + A F
Sbjct: 427 GFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYF 486
Query: 227 DGLLSNEENEYGTALDCSCDLEF---LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
+L++ + T + L GK +H +++ G+ E Y P
Sbjct: 487 RHMLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEG-----------YVP 535
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
N A++ Y K G A W + + +V+ +++ + G D+
Sbjct: 536 N-----ALLDLYVKCGQTGYA------WAQF---GAHGTKDVVSWNIMLAGFVAHGHGDI 581
Query: 344 APMFFDRTLDK----DVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVV 398
A FF+ L+ D V A+ G G+ +GW LFH + K+ I P +HYA +V
Sbjct: 582 ALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMV 641
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLL+R G + FI MPI +V ALL+ +I
Sbjct: 642 DLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRI 678
>gi|354805228|gb|AER41643.1| pentatricopeptide [Oryza punctata]
Length = 468
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 127/284 (44%), Gaps = 42/284 (14%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V+V T L++MYAKCG V A FD + ++ V +A+IV +G H+ AF F ++
Sbjct: 149 DVVVATALVNMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCFGKHDRGKEAFDLFVSMM 208
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ +E + L D+ + +H + +K GL Q +
Sbjct: 209 RDRCCPDELTLASLLSSCADMAAANEATQLHAYTVKRGL----------------QDFLQ 252
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLIDMYAKCGSVDLAP 345
+ NA+I Y K G+ +EA F RN +V + ++ +A G A
Sbjct: 253 VGNALIMAYGKTGFVQEATHTF----------GMIRNPDLVTWSSMVSSFAYLGFAKSAI 302
Query: 346 MFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFH-HIRKHGIEPRHQHYARVVDL 400
FDR L + + +G GL E+ + F +R H I+P QH A +VDL
Sbjct: 303 NLFDRMLQQGIRADGIAFLGVLSACSHAGLIEDAFKYFLLMVRDHKIDPTPQHLACLVDL 362
Query: 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK----IPMQQW 440
L RAG A++F++NM + + V A L A + I + +W
Sbjct: 363 LGRAGRIRDAYEFLVNMSCDTNVDVIGAFLGACRMRGNIELAKW 406
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS ++ V T L D YAK G VD A FD TL +D V+ + M Y +GL E W
Sbjct: 34 KSGSGSDARVATALADSYAKSGLVDHARRVFDETLLRDQVLWNVMVSCYSSYGLVRECWD 93
Query: 378 LFHHIRKHG 386
+F +R+ G
Sbjct: 94 VFGSMRRSG 102
>gi|354805199|gb|AER41617.1| pentatricopeptide [Oryza glumipatula]
Length = 520
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 36/274 (13%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V+V T L+DMYAKCG V A FD + ++ V +A+IV YG H+ AF F ++
Sbjct: 149 DVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMM 208
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ +E + L D+ + +H + ++ GL Q +
Sbjct: 209 RHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGL----------------QDFLQ 252
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ NA+I Y KNG+ +EA + F + +++ + ++ +A G A
Sbjct: 253 VGNALIMAYGKNGFVQEAKRTFGMI---------HNPDLVTWSSMVSSFAYLGLSKSAID 303
Query: 347 FFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLL 401
FDR L + + +G GL E+G+ F + R + I+P QH A +VDLL
Sbjct: 304 LFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLL 363
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG A++F++NM + + V A L A ++
Sbjct: 364 GRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRM 397
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS ++ V T L D YAK G VD A FD T +D V+ + M Y HGL E W
Sbjct: 34 KSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVVWNVMVSCYSSHGLVRECWD 93
Query: 378 LFHHIRKHG 386
+F +R+ G
Sbjct: 94 VFGSMRRSG 102
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 108/372 (29%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+PN +++ AK G +E ++ + Y G E+ V + L+ MY CG +
Sbjct: 125 EPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEF-----VMSNLVRMYVMCGFM 179
Query: 191 -DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
D +F+ ++KD+V ++++ G E
Sbjct: 180 KDARVLFYKNIIEKDMV----------------------VMTDRRKRDG---------EI 208
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+ ++ G+M +LG + +L Q +V WN MISGY+ NG+ ++AV++F
Sbjct: 209 VLWNVMIDGYM-RLGDCKAARMLFDKMR----QRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 310 K------------------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ W+ Y S R + ++ + LIDMY+KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG----------------------------- 370
++ A F+R ++V+ SAM G+ +HG
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 371 ------LGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
L EEG F + G+EPR +HY +VDLL R+G + A +FI+NMPI+
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 424 SVRRALLSAWKI 435
+ +ALL A ++
Sbjct: 444 VIWKALLGACRM 455
>gi|24059871|dbj|BAC21338.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509918|dbj|BAD30218.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 459
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 36/274 (13%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V+V T L+DMYAKCG V A FD + ++ V +A+IV YG H+ AF F ++
Sbjct: 150 DVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMM 209
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ +E + L D+ + +H + ++ GL Q +
Sbjct: 210 RHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGL----------------QDFLQ 253
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ NA+I Y KNG+ +EA + F + +++ + ++ +A G A
Sbjct: 254 VGNALIMAYGKNGFVQEAKRTFGMI---------HNPDLVTWSSMVSSFAYLGLAKSAID 304
Query: 347 FFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLL 401
FDR L + + +G GL E+G+ F + R + I+P QH A +VDLL
Sbjct: 305 LFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLL 364
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG A++F++NM + + V A L A ++
Sbjct: 365 GRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRM 398
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS ++ V T L D YAK G VD A FD T +D V+ + M Y HGL E W
Sbjct: 34 KSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWD 93
Query: 378 LFHHIRKHG 386
+F +R+ G
Sbjct: 94 VFGSMRRSG 102
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/417 (25%), Positives = 157/417 (37%), Gaps = 120/417 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMD-------------------------------YYIG 166
N +I + + G+ E+A+ LF + +D Y
Sbjct: 139 NILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAF 198
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EWSAFGS 225
K + + V LI MYA CG V A + F K V+ +AMI GY + +W
Sbjct: 199 KRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVE 258
Query: 226 -FDGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLT 276
F G+L +E A C L G+ + + + G+ +L L+ +
Sbjct: 259 MFKGMLEVRAPFDEVTLLSVATACG-RLGDANLGQWIAEYAEEKGMLRSRNLATALVDMY 317
Query: 277 AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP--------------- 309
A C + +V W+AMISGY ++ EA+ +F
Sbjct: 318 AKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMV 377
Query: 310 ---------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
KW+ YI + + VI+ T L+D YAKCG + A F+ +
Sbjct: 378 SVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR 437
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHI----------------------------RKH- 385
+ +A+ G +G E LF + R+H
Sbjct: 438 NTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHF 497
Query: 386 -------GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GI PR +HY +VDLL RAG + A++FI NMPIE V RALLSA +
Sbjct: 498 TSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTV 554
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 151/376 (40%), Gaps = 94/376 (25%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFP----------------------KWMDYYIGKSE 169
PN L NA+I GY +E+ + + MD +G+
Sbjct: 109 PNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQI 168
Query: 170 YRNNVIVN---------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GL 217
+ ++V +IDMY KCG ++ FD ++DV+ + +I Y G
Sbjct: 169 HGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGN 228
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
E SA FDGL + + + + + M + G+E + LI + +
Sbjct: 229 ME-SAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVIS 287
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMY 335
C A+ G A+ + W+ KSE+ +++V+V + LIDMY
Sbjct: 288 AC----------------AQLGAAK-----YADWIRDVAEKSEFGGKHSVVVGSALIDMY 326
Query: 336 AKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG------------------------- 370
+KCGSV A F +++V S+M +G+ +HG
Sbjct: 327 SKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFI 386
Query: 371 ----------LGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
+ E+GW +F + K +GI+P HY +VDLL RAG A + + MPI
Sbjct: 387 GVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPI 446
Query: 420 ELRLSVRRALLSAWKI 435
E V ALL A +I
Sbjct: 447 EPHGGVWGALLGACRI 462
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 131/340 (38%), Gaps = 121/340 (35%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWS 221
+ K +R+N+ + +++ +YA CG + A + F++ +DVV + MI + G HE
Sbjct: 154 VEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHE-- 211
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G++D E
Sbjct: 212 --GAYDLFSRMPER---------------------------------------------- 223
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKW------------------------------ 311
NV W +MI+GY + G A+EA+ LF K
Sbjct: 224 --NVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR 281
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ Y + ++ NV ++ LIDMY KCG ++ A F+ ++ VV SAM G +HG
Sbjct: 282 IHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGR 341
Query: 372 GEEGWVLFHHI------------------------------------RKHGIEPRHQHYA 395
EE LF + R +GI P+ +HY
Sbjct: 342 AEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYG 401
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL+RAG + A +FI+NMP++ V ALL A ++
Sbjct: 402 CMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRV 441
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW------------------------------ 160
+ NV +MI+GY + G A+EA+ LF K
Sbjct: 222 ERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR 281
Query: 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ Y + ++ NV ++ LIDMY KCG ++ A F+ ++ VV SAMI G +H
Sbjct: 282 IHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMH 339
>gi|449439735|ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
gi|449514868|ref|XP_004164502.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 601
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 123/525 (23%), Positives = 208/525 (39%), Gaps = 121/525 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M+ + + N T PL+LKAC L S+ G +H + +GF +F +T +D+
Sbjct: 44 MRHSGIHGNNFTFPLLLKACANLASIGDGTMLHAHLIHVGFE-----SDVFVQT-SLVDM 97
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
Y +S S FD + + + + F + L+L ++
Sbjct: 98 YSKFSNLRASR-QVFDETSTRSVISWNSMI-----------AAYSRSFRVNEALKLFREM 145
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP-KWMDYYIGKSEYRNNVIVNTV 179
L ++PN + +++SG+A + LF + + + K + ++ V
Sbjct: 146 LGG-----GFEPNSSTFVSLLSGFADPTHGS----LFQGRLLHGCLTKFQLHDDTPVENS 196
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239
L+ MY G +D A F +K V+ + M+ GY L + F+ +N
Sbjct: 197 LVQMYVNFGQIDSACSVFYAISEKTVISWTIMLGGY-LKAGAVAKVFETFSQMRQNN--V 253
Query: 240 ALD--------CSC-DLEFLEQGKIVHGFMIKLGLELESD---LLISLTAVCR------- 280
LD SC L L G +H ++K GL+ E LLIS+ + C
Sbjct: 254 VLDKFVFVDIISSCIQLGNLFLGSSLHSLLLKTGLKYEDPIGCLLISMYSKCGDLLSARA 313
Query: 281 -----YQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------------- 309
+ ++ W +MISGYA GY EA+ LF
Sbjct: 314 VFDLLSEKSIYSWTSMISGYANAGYPREALSLFSMATQNNVRPNGAMLATAISACADLGS 373
Query: 310 ----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ ++ +I + ++ V+T LI +Y K GS++ A F+ + +D+ S+M G
Sbjct: 374 LSMRREIEAFIQQDGLASDSQVSTSLIHLYCKFGSIEKAEKVFNSMIHRDLAAWSSMMNG 433
Query: 366 YGLHGLGEEGWVLFHHIRKHGIEP------------RHQ--------------------- 392
Y +HG+GE+ LFH +++ GI+P H
Sbjct: 434 YAVHGMGEKTMNLFHEMQRSGIKPDGSVYASILLACSHSGLVEDGLEHFKNMQLDYGIVP 493
Query: 393 ---HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
HY +VD+L+RAG+ A I MP + + LSA +
Sbjct: 494 TMVHYTCLVDILSRAGHLELALNTIQEMPTQFQSQAWAPFLSACR 538
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 148/349 (42%), Gaps = 98/349 (28%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSNEENEY 237
L++MYA+ G+++ A FD ++ V+ ++ GY + + F F + +
Sbjct: 150 LVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLFYLM-----RDT 204
Query: 238 GTALDC--------SC-DLEFLEQGKIVHGFMIKLGLELESDLL----ISLTAVCR---- 280
G ALD +C ++ ++GK VHG I+ +S L I + CR
Sbjct: 205 GLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDN 264
Query: 281 --------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI---------------- 316
+ NV +W +ISG+AK A EA+ LF + + I
Sbjct: 265 ARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSS 324
Query: 317 ------GKSEY----RNNVIVNTV----LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
GKS + RN + ++ V ID YA+CG++ +A FD ++V+ S+M
Sbjct: 325 LGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRNVISWSSM 384
Query: 363 TVGYGLHGLGEE-----------------------------------GWVLFHHI-RKHG 386
+G++GL EE GW F + R +G
Sbjct: 385 INAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYG 444
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ P +HYA +VDLL RAG A FI NMP++ S ALLSA +I
Sbjct: 445 LVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRI 493
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 124/512 (24%), Positives = 183/512 (35%), Gaps = 181/512 (35%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
P+ P VLK+C + L G VHG I LG + DLY +
Sbjct: 104 PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLG---------------MGFDLYTCNALM 148
Query: 68 E-WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 126
+S F S + E N Y D +GK + K E ES L SL
Sbjct: 149 NMYSKFWSLE-----EVNTYKKVFD---------EGKTSDVYSKK---EKESYYLGSLRK 191
Query: 127 VCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184
V P ++ N +ISG A+NG E+A+ M
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALM---------------------------MV 224
Query: 185 AKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCS 244
+ G+ DL P F + S + + F + LL
Sbjct: 225 REMGNADLRPDSF--------TLSSVLPI---------FAEYVNLL-------------- 253
Query: 245 CDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLWN 289
+GK +HG+ I+ G + + LI + A C Q + WN
Sbjct: 254 -------KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWN 306
Query: 290 AMISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGKS 319
++I+G +NG +E +K F K + YI +S
Sbjct: 307 SIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS 366
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+ NV + + L+DMYAKCG++ A FD+ D+V +AM +GY LHG + LF
Sbjct: 367 RFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLF 426
Query: 380 HHIRKHGIEPRH------------------------------------QHYARVVDLLAR 403
+ G++P + +HYA V DLL R
Sbjct: 427 KRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGR 486
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G A++FI +M IE SV LL+A ++
Sbjct: 487 VGRLEEAYEFISDMHIEPTGSVWSTLLAACRV 518
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/428 (23%), Positives = 172/428 (40%), Gaps = 107/428 (25%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEA 153
CD E +QG + +I+L +E ++PN+ +++ A G E
Sbjct: 167 CDTETCDQGPRI---LIQLLVE-------------GFEPNMYTFISILKTCASKGDLNEG 210
Query: 154 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
+ + + I + N +VN +YAKCGS + A F ++DVV +A+I
Sbjct: 211 KAIHGQVIKSGINPDSHLWNSLVN-----VYAKCGSANYACKVFGEIPERDVVSWTALIT 265
Query: 214 GYGLHEW-SAFGSFDGLLSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLE-- 266
G+ + S F+ +L+ N + + L L ++ GK VH ++K L+
Sbjct: 266 GFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 325
Query: 267 -LESDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313
L+ + A R+ + ++ W +++GYA++G E+AVK F +
Sbjct: 326 DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 385
Query: 314 YYIGKSEY------------------------------RNNVIVNTVLIDMYAKCGSVDL 343
+ +E+ ++ V + L+DMYAKCG V+
Sbjct: 386 EGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVED 445
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------------------- 372
A + FD + +D V + + GY HG G
Sbjct: 446 AEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSH 505
Query: 373 ----EEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR 427
EEG F+ + K +GI P +HYA +VD+L RAG + FI M + + +
Sbjct: 506 MGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWE 565
Query: 428 ALLSAWKI 435
+L A K+
Sbjct: 566 TVLGACKM 573
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 51/225 (22%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
+ K + ++++++ + MY K SV+ FF + +++ R+ ++ G+
Sbjct: 116 VCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGF--------- 166
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
CD E +QG + +I+L +E ++PN
Sbjct: 167 --------------------CDTETCDQGPRI---LIQLLVE-------------GFEPN 190
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
+ + +++ A G E + + + I + N +VN +YAKCGS + A
Sbjct: 191 MYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVN-----VYAKCGSANYA 245
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
F ++DVV +A+ G+ G G G +F+ + G P
Sbjct: 246 CKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNP 289
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 192/454 (42%), Gaps = 83/454 (18%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV------C----YLFDGLFDRTIV 56
+P+ T P VLKAC L + G VHG + GF V C Y+ G + +
Sbjct: 104 SPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLR 163
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
+ W+ W + S G ++N N + A++ F E M G++
Sbjct: 164 VFEDIPQWNVVAWGSLIS--GFVNN--NRFSDAIEA-----FRE--------MQSNGVKA 206
Query: 117 ESDLLISLTAVC-RYQPNVTLR--NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 173
+++ L C R + VT + + + G + Y + V N
Sbjct: 207 NETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGF----------------N 250
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL- 229
VI+ T LIDMYAKCG + A FD ++ +V +++I GY G E + D L
Sbjct: 251 VILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLD 310
Query: 230 --LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287
++ ++ + + + S + G+ +H ++ K G ++ + VC
Sbjct: 311 LGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAI------VC-------- 356
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
A+++ YAK G AE A K F + + + I TV+I A G + A
Sbjct: 357 --ALVNMYAKTGDAESAKKAF---------EDLEKKDTIAWTVVIIGLASHGHGNEALSI 405
Query: 348 FDRTLDKDVVMRSAMT---VGYGLH--GLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLL 401
F R +K +T V Y GL EEG F +R HG+EP +HY +VD+L
Sbjct: 406 FQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDIL 465
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+RAG A + + MP++ +++ ALL+ I
Sbjct: 466 SRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDI 499
>gi|255558478|ref|XP_002520264.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540483|gb|EEF42050.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/423 (25%), Positives = 167/423 (39%), Gaps = 122/423 (28%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYYI----------GKSEYR 171
+ +V N+MISG+A GY + A+ +F P Y I GK +
Sbjct: 3 ERDVVSWNSMISGFASYGYFDSALGIFGEMQNMGVRPSAFTYSIMVSIVFDALHGKELHG 62
Query: 172 N---------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG-----YG- 216
+ NV++ LIDMY K G VD A F + DV+ +++I+G YG
Sbjct: 63 SMIRSGFNTLNVVLGNSLIDMYGKFGCVDYAFGVFFTMEEVDVITWNSLIIGCCKSGYGE 122
Query: 217 --LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDL 271
LH++ S G +E CS +L L++GK + F +K+G + S
Sbjct: 123 LALHQFCLMRS-SGYSPDEFTCSAVITSCS-NLRNLDKGKQIFAFCLKVGFLSNTIVSSA 180
Query: 272 LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319
I L + C Q N L N+MIS YA +G+ E A++LF + I +
Sbjct: 181 AIDLFSKCNRLEDSVQLFEELDQLNSALCNSMISSYAGHGFGENALQLFVLALRENIRPT 240
Query: 320 EY-----------------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
E+ + IV + L+ MY K G +D A F
Sbjct: 241 EFTISSVLSFISIFPPEQGTQFHSSVVKLGFELDAIVASSLVQMYTKFGFIDYAMDIFKS 300
Query: 351 TLDKDVVMRSAMTVG-------------------------------------YGLHGLGE 373
+D++ + M +G YG G E
Sbjct: 301 MTVRDLISWNTMIMGLTQNGRVIEALDAFKKLLNRGPPPDRITLAGVLLACSYG--GFIE 358
Query: 374 EGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
EG +F ++ +GI P ++HYA +V+LL +AG+ + A I MP E R++L A
Sbjct: 359 EGMTIFSSMQGSYGIIPSNEHYASIVNLLCQAGWLDEAMSMIEAMPSEPNSMTCRSILHA 418
Query: 433 WKI 435
I
Sbjct: 419 CAI 421
>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
gi|194688780|gb|ACF78474.1| unknown [Zea mays]
gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
Length = 695
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 122/533 (22%), Positives = 188/533 (35%), Gaps = 161/533 (30%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF---------------------LVCYLFDGLFDRT 54
+L+A SL G ++HG I +GF L C +F G+ DR
Sbjct: 10 LLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRN 69
Query: 55 IVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 114
+V W+A G L +G A C ++L
Sbjct: 70 VV-----------SWTAL--MVGFL-----RHGDATGC-----------------LRLLG 94
Query: 115 ELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174
E+ + S A Y + +L+ + G G + + ++ Y+ +
Sbjct: 95 EMRT---ASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCV----------RAGYQEHD 141
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMIVGYGL--HEWSAFGSF----- 226
+V + L+ +Y+K G + A FD L + +AM+ GY H A F
Sbjct: 142 VVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRR 201
Query: 227 -DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAVCR 280
+G +E + + L L +G VH M G S+ L+ + CR
Sbjct: 202 HEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCR 261
Query: 281 YQP------------NVTLWNAMISGYAKNGYAEEAVKLFPKW-----------MDYYIG 317
P NV W A++ G+A+ G EA++LF ++ + +G
Sbjct: 262 RLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVG 321
Query: 318 -------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K +V ++DMY KCG D A F +VV
Sbjct: 322 VLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVS 381
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------------------- 389
+ M G G HGLG E LF +R G+EP
Sbjct: 382 WTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIR 441
Query: 390 -------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +HYA +VDLL RAG A I MP+E + V + LLSA ++
Sbjct: 442 RDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRV 494
>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 701
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 171/405 (42%), Gaps = 94/405 (23%)
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
+L L C ++ V+ +A++ + ++++ + + I ++N
Sbjct: 108 ELFEILEIRCSFKVGVSTYDALVEACIR----LKSIRCVKRVYGFIISNGFEPEKYMMNR 163
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSF----DGLLS 231
+L+ M+ KCG + A FD ++++ +++I G+ G +E AF F + L
Sbjct: 164 ILL-MHVKCGMIIDARRLFDEMPERNLFSYNSIISGFVNFGNYE-EAFELFKLMWEELSD 221
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC--------- 279
E + + L S L + GK +H +KLG+ S LI + + C
Sbjct: 222 CETHTFAVMLRASAGLWSVYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCA 281
Query: 280 -RYQPNVTL--WNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------- 317
P T WN +++GYA +GY+EEA+ L + D +
Sbjct: 282 FESMPEKTTVAWNNIVAGYALHGYSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKL 341
Query: 318 -----------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+S + + ++ NT L+D Y+K G VD A FD+ K+++ +A+ GY
Sbjct: 342 ELTKQAHASLIRSGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGY 401
Query: 367 GLHGLG-----------------------------------EEGWVLFHHIRK-HGIEPR 390
HG G E+GW +F + + HGI+PR
Sbjct: 402 ANHGRGTDAVRLFERMIAAKVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPR 461
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HYA +++LL R G + A FI P++ +++ ALL+A ++
Sbjct: 462 AMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRM 506
>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
Length = 867
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/428 (23%), Positives = 173/428 (40%), Gaps = 112/428 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVK 155
L+ L+ GK VH ++++ E + + NA++S YAK GY EEA
Sbjct: 361 LDNLQAGKQVHAYILRHPFLFE---------------DTSAGNALVSFYAKCGYIEEAYH 405
Query: 156 LFP--------KW---MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD-LAPMFFDRTLDK 203
F W +D + K + + + V++ + + SV L + F +L +
Sbjct: 406 TFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLR 465
Query: 204 DVVMRSAMIVGYGLHEWSAFGSFDGLLSNE---------ENEYGTAL--DCSCDLEFLEQ 252
V + I GY + S + + N EY + + S +
Sbjct: 466 --VKKVKEIHGYSIRSGSLLCATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTC 523
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
++ G+ + LG +++++ S + + ++T WN M+ YA+N E+A++LF K
Sbjct: 524 NSLISGY-VGLGSHYDANMIFSGMS----ETDLTTWNLMVRVYAENDCPEQALELFLKLQ 578
Query: 313 DY------------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
YI +S + + + T L+D YAKCG +
Sbjct: 579 TQGMKPDVVTIMSLIPVCTQMASVHLLRQCHGYIIRSSFEDLHLKGT-LLDAYAKCGIIG 637
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------- 391
A F ++DKD+VM +AM GY +HG+ E+ F H+ GI+P H
Sbjct: 638 YAYKIFQSSVDKDLVMFTAMIGGYAMHGMSEKALETFSHMLNMGIKPDHVIFTSILSACS 697
Query: 392 -------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
+ +A VVDLLAR G+ + A+ F+ +PIE ++
Sbjct: 698 HAGRIAEGLKIFDSIEKIHGMKPTIEQFACVVDLLARGGHVSEAYSFVTKIPIEANANIW 757
Query: 427 RALLSAWK 434
LL A K
Sbjct: 758 GTLLGACK 765
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 106/270 (39%), Gaps = 58/270 (21%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
K + Y+ K + + + + L++MYAKCG +D FD+ D V+ + ++ GY
Sbjct: 57 KCLHSYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRS 116
Query: 216 GLHEWSAFGSFDGLLSNEEN-----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES- 269
G ++ F + S+ E T L L GK VHG++IK G E+++
Sbjct: 117 GKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTF 176
Query: 270 --DLLISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-- 312
+ L+S+ A C +V WNAMI+G A+NG +EA LF M
Sbjct: 177 AGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKG 236
Query: 313 --------------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
Y + E +V V L+ Y K G
Sbjct: 237 SVKPNYATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGR 296
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
A F +D+V + + GY L+G
Sbjct: 297 TKEAESLFWAMDARDLVSWNTIIAGYALNG 326
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 138/380 (36%), Gaps = 102/380 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGFLVCY---------------------LFD--GLFD 52
+LK+C AL + +G +H + G + C+ LFD G D
Sbjct: 43 ILKSCSALLASNLGKCLHSYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCD 102
Query: 53 RTI--VFLDLYHLWSRTEWSAFGSFDGLLSNEEN-----EYGTALDCSCDLEFLEQGKIV 105
I + L Y + + F + S+ E T L L GK V
Sbjct: 103 PVIWNIVLSGYSRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSV 162
Query: 106 HGFMIKLGLELES---DLLISLTAVCRY-------------QPNVTLRNAMISGYAKNGY 149
HG++IK G E+++ + L+S+ A C +V NAMI+G A+NG
Sbjct: 163 HGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGL 222
Query: 150 AEEAVKLFPKWM----------------------------------DYYIGKSEYRNNVI 175
+EA LF M Y + E +V
Sbjct: 223 LKEAFSLFSLMMKGSVKPNYATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVS 282
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-EW-SAFGSFDGLLSNE 233
V L+ Y K G A F +D+V + +I GY L+ EW + F L+S E
Sbjct: 283 VCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLE 342
Query: 234 -----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288
+ L L+ L+ GK VH ++++ E + +
Sbjct: 343 MLLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFE---------------DTSAG 387
Query: 289 NAMISGYAKNGYAEEAVKLF 308
NA++S YAK GY EEA F
Sbjct: 388 NALVSFYAKCGYIEEAYHTF 407
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 63/238 (26%)
Query: 253 GKIVHGFMIKLG---LELESDLLISLTAVC--------------RYQPNVTLWNAMISGY 295
GK +H +++K G + S L+++ A C R P +WN ++SGY
Sbjct: 56 GKCLHSYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDP--VIWNIVLSGY 113
Query: 296 AKNGYAE-EAVKLFP-------------------------------KWMDYYIGKSEYRN 323
+++G + + +K+F K + Y+ KS +
Sbjct: 114 SRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEM 173
Query: 324 NVIVNTVLIDMYAKCGSVDL-APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
+ L+ MYAKCG V A FD + KDVV +AM G +GL +E + LF +
Sbjct: 174 DTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLM 233
Query: 383 RKHGIEPRHQHYARVVDLLA--------RAGYSNHAFKFIMNMP-IELRLSVRRALLS 431
K ++P + A ++ + A R G H+ +++ P + +SV ALLS
Sbjct: 234 MKGSVKPNYATVANILPVCASFDENIAHRCGRQIHS--YVLQWPELSADVSVCNALLS 289
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/406 (24%), Positives = 160/406 (39%), Gaps = 123/406 (30%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------- 171
QP+ + N MI G +++ A+ L+ + +++ Y
Sbjct: 70 QPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSA 129
Query: 172 -----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+N +V L+ +AKCG +++A FD + DVV S++I GY
Sbjct: 130 VHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGD 189
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
L NE E + + ++ G+ +K G E+ES ++ A +
Sbjct: 190 LKVAR---KLFNEMPER----------DLVSWNVMITGY-VKQG-EMESARMLFDEAPVK 234
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLF-------------------------------- 308
+V WNAMI+GY G +++A++LF
Sbjct: 235 ---DVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGK 291
Query: 309 ---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
K M+ +GK + ++ LIDMYAKCG++ + F DKDV+ +++ VG
Sbjct: 292 KVHAKVMEISMGKL----STLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVG 347
Query: 366 YGLHGLGEEGWVLFHHIRK------------------------------------HGIEP 389
LHG G+E LF +++ + IEP
Sbjct: 348 MALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEP 407
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+H +VD+L RAG A KFI +M IE + R LL+A K+
Sbjct: 408 NIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLAACKV 453
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 138/345 (40%), Gaps = 89/345 (25%)
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLLSN--- 232
++D+ + + FD +++DVV + +++G G H A G +
Sbjct: 109 AIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHH-EALGFVRKMCREGFR 167
Query: 233 -EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR---YQPNV 285
+ T L + +++G VHGF + G + + LI + A C Y V
Sbjct: 168 PDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKV 227
Query: 286 ---------TLWNAMISGYAKNGYAEEAVKLFP--------------------------- 309
LWN++++G A+NG EEA+ +F
Sbjct: 228 FDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASL 287
Query: 310 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
K + Y+ + +NV +++ LIDMY KCG + +A FD+ DVV +AM +GY
Sbjct: 288 RFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGY 347
Query: 367 GLHGLGEEGWVLF----------HHI--------------------------RKHGIEPR 390
LHG E VLF +HI +GI P
Sbjct: 348 ALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPT 407
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+H+A + D L RAG + A+ FI M I+ SV LL A ++
Sbjct: 408 LEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRV 452
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVC-------RYQPNVTLR-----NAMISG 143
+++G VHGF + G + + LI + A C + N+ +R N++++G
Sbjct: 186 VKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAG 245
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
A+NG EEA+ +F K + Y+ + +N
Sbjct: 246 CAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDN 305
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V +++ LIDMY KCG + +A FD+ DVV +AMI+GY LH
Sbjct: 306 VFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALH 350
>gi|302142318|emb|CBI19521.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 108/429 (25%), Positives = 173/429 (40%), Gaps = 112/429 (26%)
Query: 101 QGKIVHGFMIKLGLELESDLLISLTAV-CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
QGK +HGF IK GL+L+ + +LT++ ++ N MI Y +NG +EA+ +F
Sbjct: 277 QGKAIHGFGIKSGLDLDCRVKNALTSMYAKFS-----WNTMIGAYGQNGLFDEAMLVF-- 329
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDM--YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
K + V VN V I M YA CG+++ A + ++ +++V +AMI GY
Sbjct: 330 -------KQMQKERVEVNYVTIIMCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYA- 381
Query: 218 HEWSAFG----SFDGLLSNEENEYGTA----LDCSCDLEFLEQGKIVHGFMIKLGLELES 269
E G F +L + A L D F+ G +H + +K G L +
Sbjct: 382 -EKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTG--LCA 438
Query: 270 DLLISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
D L+ + Y + + WN++IS + G +A++LF +
Sbjct: 439 DCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMR 498
Query: 313 DY------------YIGKSE--------------YRNNV----IVNTVLIDMYAKCGSVD 342
Y G SE RNN+ + T L+DMY KCG ++
Sbjct: 499 MYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLE 558
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------- 391
A F + + + M GYGL G + +++ G++P
Sbjct: 559 SAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACT 618
Query: 392 -------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
QH A +VDLL+RAG+ A F+ NM +E ++
Sbjct: 619 HGGLVWEGKRYFRSMREDFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIW 678
Query: 427 RALLSAWKI 435
ALL++ I
Sbjct: 679 GALLTSCCI 687
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 30/255 (11%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAV-----KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 185
+P+ + +I Y + + + K+ + ++ KS + V + T +D Y
Sbjct: 145 KPSDLTFSLLIKAYVADASSSTVIDSPNTKIEANQIQTHLRKSGFNQYVYLTTAFLDFYG 204
Query: 186 KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSF-----DGLLSNEENEYG 238
K G + A F+ +DVV +A+I GY +++ A F +G + G
Sbjct: 205 KLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVG 264
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQPNVTLWNAMISGYAK 297
C + + QGK +HGF IK GL+L+ + +LT++ ++ WN MI Y +
Sbjct: 265 LVPSCG-RPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKFS-----WNTMIGAYGQ 318
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM--YAKCGSVDLAPMFFDRTLDKD 355
NG +EA+ +F K + V VN V I M YA CG+++ A + ++ ++
Sbjct: 319 NGLFDEAMLVF---------KQMQKERVEVNYVTIIMCSYAGCGNIESAGLLYNLMPQRN 369
Query: 356 VVMRSAMTVGYGLHG 370
+V +AM GY G
Sbjct: 370 LVSLTAMISGYAEKG 384
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAV-----KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
+P+ ++ +I Y + + + K+ + ++ KS + V + T +D Y
Sbjct: 145 KPSDLTFSLLIKAYVADASSSTVIDSPNTKIEANQIQTHLRKSGFNQYVYLTTAFLDFYG 204
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYAR 396
K G + A F+ +DVV +A+ GY +G + +F + + G P +
Sbjct: 205 KLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVG 264
Query: 397 VVDLLARA-----GYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+V R G + H F + ++ R V+ AL S +
Sbjct: 265 LVPSCGRPDIIFQGKAIHGFGIKSGLDLDCR--VKNALTSMY 304
>gi|302762022|ref|XP_002964433.1| hypothetical protein SELMODRAFT_82035 [Selaginella moellendorffii]
gi|300168162|gb|EFJ34766.1| hypothetical protein SELMODRAFT_82035 [Selaginella moellendorffii]
Length = 490
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 153/382 (40%), Gaps = 89/382 (23%)
Query: 99 LEQGKIVHGFMIKLGL---ELESDLLISLTAVCR------------YQPNVTLRNAMISG 143
L + + VH +++ GL S+LL+ + C PNV +I+
Sbjct: 67 LAEAERVHAAVLRSGLGGDRFLSNLLVEMYGRCGGVEGSRTAFDAIESPNVYSWTLLIAA 126
Query: 144 YAKNGYAEEAVK----------------------------LFP--KWMDYYIGKS---EY 170
YA+NG+ EA++ + P +W+ + S
Sbjct: 127 YARNGHHREAMEALRRMDLDGVEADAFTYSTIFNMISRKEMLPQARWLHERVSTSLELGL 186
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
++ + T +++MY KCGS+ A F R +DVV +AM+ Y + + + L
Sbjct: 187 NRDIFLGTAIVNMYGKCGSIHDAEEMFFRMEHRDVVAWNAMLSAYAHNGYELEAA--KLF 244
Query: 231 SNEENE--------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
E+E + + L+ L LEQGK+VHG + +LG E E
Sbjct: 245 QEMEHEGVKADRVVFVSLLEACSKLGDLEQGKVVHGRVTELGFEAED------------- 291
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
L +A+++ Y K G EEA LF K + NV+ VLI Y + G V+
Sbjct: 292 ---VLGHALVNLYGKCGALEEARSLFGKIVS---------KNVVSWNVLITAYLQNGLVE 339
Query: 343 LA-----PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH-HIRKHGIEPRHQHYAR 396
A M D T DV + + G GL +G F + HG+ P H
Sbjct: 340 DALKLFTEMALDGTRPDDVTFNNLVNFGCSHAGLVGQGMHYFACMVEDHGVTPTADHMNC 399
Query: 397 VVDLLARAGYSNHAFKFIMNMP 418
+VDLL RAG+ A I MP
Sbjct: 400 LVDLLGRAGWLREAEDLIRKMP 421
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 59/142 (41%), Gaps = 38/142 (26%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY 149
L+ L LEQGK+VHG + +LG E E L +A+++ Y K G
Sbjct: 263 LEACSKLGDLEQGKVVHGRVTELGFEAED----------------VLGHALVNLYGKCGA 306
Query: 150 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA-----PMFFDRTLDKD 204
EEA LF K + NV+ VLI Y + G V+ A M D T D
Sbjct: 307 LEEARSLFGKIVS---------KNVVSWNVLITAYLQNGLVEDALKLFTEMALDGTRPDD 357
Query: 205 VVMRS--------AMIVGYGLH 218
V + A +VG G+H
Sbjct: 358 VTFNNLVNFGCSHAGLVGQGMH 379
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 138/352 (39%), Gaps = 90/352 (25%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL-- 230
+ V L+ +A CG VD + F T KDVV +A+I G L A + + +
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGC-LRNGRAVEALECFVEM 195
Query: 231 --SNEENEYGTALDCSCDLEFLEQ---GKIVHGFMIKLGLEL----ESDLLISLTAVCRY 281
S E + T + C L G+ VHGF ++ G + L+ + + C Y
Sbjct: 196 RSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGY 255
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
N+ W A+I+GY + +EA+K+F
Sbjct: 256 CDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTA 315
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+W+ Y+ +S+ N + T L+DMY+KCG VD A + F++ KDV
Sbjct: 316 CAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPW 375
Query: 360 SAMTVGYGLHG-----------------------------------LGEEGWVLFH-HIR 383
+AM G + G L +EG LF I
Sbjct: 376 TAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC 435
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ +EP HY +VDLL RAG A KFI +MP+E V AL S I
Sbjct: 436 DYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMI 487
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 112/457 (24%), Positives = 176/457 (38%), Gaps = 149/457 (32%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G+ VH F++KLGL + C V + N++++ Y K G AE A +F +
Sbjct: 181 GRKVHSFVVKLGL-----------SSC-----VPVANSVLNMYGKCGDAETARAVFERMP 224
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLH 218
+ + ++ + A G +DLA F+ D+ +V +A+I GY GL+
Sbjct: 225 ERSVSSW---------NAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLN 275
Query: 219 EWSAFGSFDGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIK----------- 262
A F +LS +E + L +L + GK VH ++++
Sbjct: 276 A-KALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTN 334
Query: 263 ------------------LGLELESDL-LISLTAVCR------------------YQPNV 285
+ + +DL +IS TA+ +V
Sbjct: 335 ALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDV 394
Query: 286 TLWNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG--------------------- 317
W AMI GY +NG+ +EA++LF P+ Y +
Sbjct: 395 VAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCK 454
Query: 318 --KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMTVGYGLHGLGEE 374
+S + V+ ++ MYA+ GS+ A FDR K+ V ++M V HGLGE+
Sbjct: 455 AIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGED 514
Query: 375 GWVLFHHI------------------------------------RKHGIEPRHQHYARVV 398
LF + KHGI P HYA +V
Sbjct: 515 AVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMV 574
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
DLLARAG + A +FI MP+E +LLSA ++
Sbjct: 575 DLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRV 611
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 43/263 (16%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS----- 225
+ NV L+ +YAK G + A F ++D V + M+VG L+ FG
Sbjct: 93 QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVG--LNRVGRFGEAIKMF 150
Query: 226 ----FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
DGL S + L E G+ VH F++KLGL + C
Sbjct: 151 LDMVTDGL-SPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGL-----------SSC-- 196
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
V + N++++ Y K G AE A +F + + + ++ + A G +
Sbjct: 197 ---VPVANSVLNMYGKCGDAETARAVFERMPERSVSSW---------NAMVSLDAHLGRM 244
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG-WVLFHHIRKHGIEPRHQHYARVVDL 400
DLA F+ D+ +V +A+ GY +GL + W + + P V+
Sbjct: 245 DLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSA 304
Query: 401 LARAGYSN-----HAFKFIMNMP 418
A G + HA+ MP
Sbjct: 305 CANLGMVSIGKQVHAYILRSRMP 327
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/434 (24%), Positives = 155/434 (35%), Gaps = 119/434 (27%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLR 137
D Q K VH +I+ GL S +L L + PN L
Sbjct: 51 DCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLW 110
Query: 138 NAMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGKSEYRNNVI 175
AMI GYA G E+ + + ++ +GK + ++
Sbjct: 111 TAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTIL 170
Query: 176 ---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFG 224
V +ID+Y KCG + A FD ++DVV + +IV Y + SA G
Sbjct: 171 IGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASG 230
Query: 225 SFDGLLSNEE-------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
FD L + Y LE+ ++ M +G+E + L + +
Sbjct: 231 LFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQK-------MQDVGMETDEVTLAGVIS 283
Query: 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
C V N + ++G+ NV+V + LIDMY+K
Sbjct: 284 ACAQLGAVKHANWIRDIAERSGFGPSG-------------------NVVVGSALIDMYSK 324
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK------------- 384
CGS D A F+ +++V S+M +GY +HG LFH + K
Sbjct: 325 CGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGI 384
Query: 385 -----------------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
G+ P HYA +VDLL RAG A + MP+E
Sbjct: 385 LSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEP 444
Query: 422 RLSVRRALLSAWKI 435
V ALL A +I
Sbjct: 445 NGGVWGALLGACRI 458
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 62/241 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDY-----------------YIGKSEYRN-------- 172
AM++GYA+NG +EA++ F K D +G ++ N
Sbjct: 244 TAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAER 303
Query: 173 -------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAF 223
NV+V + LIDMY+KCGS D A F+ +++V S+MI+GY +H SA
Sbjct: 304 SGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSAL 363
Query: 224 GSFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES--------DL 271
F +L E + + L +EQG+ + M K S DL
Sbjct: 364 QLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDL 423
Query: 272 L---------ISLTAVCRYQPNVTLWNAMISGYAKNG-------YAEEAVKLFPKWMDYY 315
L + L +PN +W A++ +G A E KL P + Y
Sbjct: 424 LGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNY 483
Query: 316 I 316
I
Sbjct: 484 I 484
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 121/495 (24%), Positives = 196/495 (39%), Gaps = 114/495 (23%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTIVFLDLYHLW 64
V PN T +VL AC L + G +VH +F GF + GL D ++
Sbjct: 138 VRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLID----------MY 187
Query: 65 SRTEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
++ + A FDG L+ + + + F + V M ++G + L+
Sbjct: 188 AKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLV 247
Query: 123 SL----TAVCRY-----------QPNVTLRNAMISGYAKNGYAEEAVKLFPK-------- 159
++ A+ R PNV N MISG+AK G+AEEA+ F +
Sbjct: 248 TVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKA 307
Query: 160 ----------------WMDY------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
++Y K +NV V + L++MYAKC +D A F
Sbjct: 308 TRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF 367
Query: 198 DRTLDKDVVMRSAMIVGYG----LHEWSAFGSFDGLLSNEENEYG-TALDCSC-DLEFLE 251
+ ++++V+ +AM+ G+ E F S + +E+ T++ +C L +L
Sbjct: 368 NSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLN 427
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL-----------------WNAMISG 294
G +H MIK + S+L ++ V Y + L WNA+I G
Sbjct: 428 FGGQLHTVMIK--NKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485
Query: 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-------------------------- 328
Y + Y +EA +F + + + E IV+
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTS 545
Query: 329 ----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ LIDMY KCG V A F ++VV +A+ GY + L EE LF I+
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHL-EEAIHLFQEIQM 604
Query: 385 HGIEPRHQHYARVVD 399
G++P +A ++D
Sbjct: 605 VGLKPTEVTFAGLLD 619
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/428 (23%), Positives = 170/428 (39%), Gaps = 101/428 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY----- 130
L + G+ L L L G +VH K GL+ L+++ A C
Sbjct: 305 LKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAK 364
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG---------- 166
+ N+ L NAM+ G+A+NG A+E ++ F P+ ++
Sbjct: 365 QVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLH 424
Query: 167 -------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
K+++ +N+ V L+DMYAK G++ A F+ D V +A+IV
Sbjct: 425 YLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIV 484
Query: 214 GYGLHEWS--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
GY E++ AF F ++SN +E + + +++ L++G+ H ++K+GL+
Sbjct: 485 GYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDT 544
Query: 268 ES---DLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ LI + C NV NA+I+GY G+ EEA+ LF +
Sbjct: 545 STCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQ 603
Query: 313 DYYIGKSEY-------------------------------RNNVIVNTVLIDMYAKCGS- 340
+ +E ++ +V L+ +Y
Sbjct: 604 MVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRF 663
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
VD +F + K +V+ +A+ GY E+ + H+R I P +A V L
Sbjct: 664 VDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASV--L 721
Query: 401 LARAGYSN 408
A AG S+
Sbjct: 722 RACAGMSS 729
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 26/256 (10%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--FGSFDGLLSN 232
++ V++D+Y KCG+VD A F R KDV ++++ Y H A SF + ++
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 233 E----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCRYQPNV 285
E E + L L+ + G+ VH + K G S LI + A CRY +
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196
Query: 286 TL------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 333
L W A+I+GY ++G+ EAVK+F + + + + + I +++
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDR-----MQRVGHAPDQITLVTVVN 251
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH 393
Y G + A F + + +VV + M G+ G EE F ++K G++
Sbjct: 252 AYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSS 311
Query: 394 YARVVDLLARAGYSNH 409
V+ +A N+
Sbjct: 312 LGSVLSAIASLSMLNY 327
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 92/418 (22%), Positives = 158/418 (37%), Gaps = 111/418 (26%)
Query: 71 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLIS 123
AF F ++SN +E + + +++ L++G+ H ++K+GL+ + LI
Sbjct: 495 AFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLID 554
Query: 124 LTAVCRY------------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY- 170
+ C NV NA+I+GY G+ EEA+ LF + + +E
Sbjct: 555 MYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVT 613
Query: 171 ------------------------------RNNVIVNTVLIDMYAKCGS-VDLAPMFFDR 199
++ +V L+ +Y VD +F +
Sbjct: 614 FAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSEL 673
Query: 200 TLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQG 253
K +V+ +A+I GY H A + + S+ ++ + + L + L+ G
Sbjct: 674 QYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNG 733
Query: 254 KIVHGFMIKLGL---ELESDLLISLTAVC----------RYQP---NVTLWNAMISGYAK 297
+ +H + G E+ LI + A C R P NV WN+MI G AK
Sbjct: 734 QEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAK 793
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
NGYAEEA+++F + I E + + + C
Sbjct: 794 NGYAEEALEIFKQMEQQSIIPDE--------VTFLGVLSACSHA---------------- 829
Query: 358 MRSAMTVGYGLHGLGEEGWVLFH-HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
G EG +F + + ++PR H +VD+L R G+ N A +FI
Sbjct: 830 ------------GRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFI 875
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 48/206 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-----VCYLFDGLFDRTI 55
+Q+ + P T +L C L +G ++HGQ+ GFL VC L+ +
Sbjct: 602 IQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQ 661
Query: 56 VFLDLYHLWSRTE-------WSAFGS-------------------FDGLLSNEENEYGTA 89
F+D L+S + W+A S D +L ++ + +
Sbjct: 662 RFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQA-AFASV 720
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC----------RYQP---N 133
L + L+ G+ +H + G E+ LI + A C R P N
Sbjct: 721 LRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNN 780
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPK 159
V N+MI G AKNGYAEEA+++F +
Sbjct: 781 VISWNSMIVGLAKNGYAEEALEIFKQ 806
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 45/217 (20%)
Query: 247 LEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLWNAM 291
L+ L K++H +K+G+ L+ ++++ L C + +V WN++
Sbjct: 54 LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV--------------------- 330
+S Y +G V+ F ++ + +E+ ++++
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF 173
Query: 331 ---------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
LIDMYAKC + A + FD L+ D V +A+ GY G E +F
Sbjct: 174 GFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDR 233
Query: 382 IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+++ G P VV+ G A K +P
Sbjct: 234 MQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIP 270
>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
lyrata]
gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
lyrata]
Length = 1305
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 202/505 (40%), Gaps = 107/505 (21%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIVFLDLYHLWS 65
+L+ C G ++HG + LGF +V Y +G + + + +
Sbjct: 632 LLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRN 691
Query: 66 RTEWSAFGSFDGLLSNEENEYGTALD----CSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
+ W++ S L ++ G LD C + + ++ G+ K L ++ +
Sbjct: 692 LSSWNSIVSSYTRLGYVDDAMGL-LDEMETCGLKPDIVTWNSLLSGYASK-ALSRDAIAV 749
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
+ + +PN + IS + Y VKL K + Y+ +++ +V V T LI
Sbjct: 750 LKRIQIAGLKPNTS----SISSLLQAVYEPGLVKL-GKAIHGYVIRNQLWYDVYVETTLI 804
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTAL 241
DMY K G + A M FD +K++V +++I G S+ GLL E AL
Sbjct: 805 DMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGL---------SYTGLLKEAE-----AL 850
Query: 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-----YQPNVTLWNAMISGYA 296
+ E ++ + ++ G +L V + +PNV W A++SG +
Sbjct: 851 ISRMEKEGIKSNAVTWNSLVS-GYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCS 909
Query: 297 KNGYAEEAVKLFPKWMD----------------------YYIGKSEY----RNNVI---- 326
KNG +K+F K + Y GK + +NN+
Sbjct: 910 KNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAH 969
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL------------------ 368
V T L+DMYAK G + A F +K + + M +GY +
Sbjct: 970 VATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAG 1029
Query: 369 -----------------HGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHA 410
GL EGW F +R H G+ P +H + +V+LL R+GY + A
Sbjct: 1030 IEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGRSGYLDEA 1089
Query: 411 FKFIMNMPIELRLSVRRALLSAWKI 435
+ FI MP++ ++ A LS+ KI
Sbjct: 1090 WDFIRTMPLKPDATIWGAFLSSCKI 1114
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 118/328 (35%), Gaps = 86/328 (26%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHEW-SAFGSFDGLLSNE 233
V + L+ Y +C S+DLA FD + D+ ++V W A F + +
Sbjct: 562 VVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSG 621
Query: 234 ENEYGTA----LDCSCDLEFLEQGKIVHGFMIKLGLE------------------LESDL 271
Y + L + E QG+ +HG++++LG E LES
Sbjct: 622 AKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSR 681
Query: 272 --------------------------------LISLTAVCRYQPNVTLWNAMISGYAKNG 299
L+ C +P++ WN+++SGYA
Sbjct: 682 KVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKA 741
Query: 300 YAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVIVNT 329
+ +A+ + K + Y+ +++ +V V T
Sbjct: 742 LSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVET 801
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
LIDMY K G + A M FD +K++V +++ G GL +E L + K GI+
Sbjct: 802 TLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKS 861
Query: 390 RHQHYARVVDLLARAGYSNHAFKFIMNM 417
+ +V A G + A + M
Sbjct: 862 NAVTWNSLVSGYATWGKTEKALAVVGKM 889
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 130/525 (24%), Positives = 208/525 (39%), Gaps = 136/525 (25%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
+ P+ T P VLKAC +++ G ++H GF+ +D V L HL+S
Sbjct: 149 LTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFM--------WD-VYVAASLIHLYS 196
Query: 66 RTEWSAFGS----FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE-LESDL 120
R + A G+ FD + + + + C + G + GL ++S
Sbjct: 197 R--YKAVGNARILFDEMPVRDMGSWNAMISGYC-----QSGNAKEALTLSNGLRAMDSVT 249
Query: 121 LISLTAVCRYQPNVTLRNAMISGYA-KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
++SL + C + R I Y+ K+G E + V+
Sbjct: 250 VVSLLSACTEAGDFN-RGVTIHSYSIKHGLESE---------------------LFVSNK 287
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGL-LSNEENE 236
LID+YA+ G + FDR +D++ +++I Y L+E A F + LS + +
Sbjct: 288 LIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPD 347
Query: 237 YGTALDCSCDLEFL---EQGKIVHGFMIKLGLELES--------------DLLISLTAVC 279
T + + L L + V GF ++ G LE L+ S AV
Sbjct: 348 CLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVF 407
Query: 280 RYQPN--VTLWNAMISGYAKNGYAEEAVKLFP-------------KWMDYYIGKSE---- 320
+ PN V WN +ISGYA+NG+A EA++++ W+ S+
Sbjct: 408 NWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGAL 467
Query: 321 ----------YRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+N +V V T L DMY KCG ++ A F + + V + + +
Sbjct: 468 RQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACH 527
Query: 367 GLHGLGEEGWVLFH----------HIR--------------------------KHGIEPR 390
G HG GE+ +LF HI +GI P
Sbjct: 528 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPS 587
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY +VD+ RAG A KFI +M ++ S+ ALLSA ++
Sbjct: 588 LKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRV 632
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 115/287 (40%), Gaps = 53/287 (18%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--------LHE 219
S+ NV ++ L+++Y G+V LA FD ++DV + MI GYG +
Sbjct: 80 SKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRC 139
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV- 278
+S F GL + C ++ G +H +K G + + SL +
Sbjct: 140 FSLFMLSSGLTPDYRTFPSVLKACRTVID----GNKIHCLALKFGFMWDVYVAASLIHLY 195
Query: 279 CRYQP--------------NVTLWNAMISGYAKNGYAEEAVKLFP--KWMD--------- 313
RY+ ++ WNAMISGY ++G A+EA+ L + MD
Sbjct: 196 SRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLS 255
Query: 314 ---------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
Y K + + V+ LID+YA+ G + FDR +D++
Sbjct: 256 ACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS 315
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+++ Y L+ LF +R I+P + +L++ G
Sbjct: 316 WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 921
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 159/390 (40%), Gaps = 90/390 (23%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
++PN +++S A + L + I + E+ + + + LIDMYAKCG
Sbjct: 270 FKPNFMTYGSVLSACASISDLKWGAHLHAR-----ILRMEHSLDAFLGSGLIDMYAKCGC 324
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVG---YGLHEWSAFGSFDGLLSN----EENEYGTALD 242
+ LA F+ +++ V + I G +GL + A F+ + +E T L
Sbjct: 325 LALARRVFNSLGEQNQVSWTCFISGVAQFGLGD-DALALFNQMRQASVVLDEFTLATILG 383
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC----------RYQP------ 283
+ G+++HG+ IK G++ + +I++ A C R P
Sbjct: 384 VCSGQNYAASGELLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTIS 443
Query: 284 ---------------------------NVTLWNAMISGYAKNGYAEEAVKLF-------- 308
NV WN+M+S Y ++G++EE +KL+
Sbjct: 444 WTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAV 503
Query: 309 -PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
P W+ + ++ K ++V V ++ MY++CG + A
Sbjct: 504 KPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARK 563
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV-DLLARAG 405
FD K+++ +AM + +GLG + + + + +P H Y V+ DLL RAG
Sbjct: 564 VFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEAMLRTECKPDHISYVAVLSDLLGRAG 623
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
N A I MP + +V ALL A +I
Sbjct: 624 LLNQAKNLIDGMPFKPNATVWGALLGACRI 653
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 161/396 (40%), Gaps = 88/396 (22%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTI----------V 56
PN T VL AC ++ L G +H +I + L +L GL D V
Sbjct: 272 PNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRV 331
Query: 57 FLDLYHLWSRTEWSAFGSF--------DGL-LSNEENEYGTALD----------CSCDLE 97
F L ++ W+ F S D L L N+ + LD CS
Sbjct: 332 FNSLGE-QNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFTLATILGVCSGQ-N 389
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLF 157
+ G+++HG+ IK G++ +V + NA+I+ YA+ G E+A F
Sbjct: 390 YAASGELLHGYAIKSGMD----------------SSVPVGNAIITMYARCGDTEKASLAF 433
Query: 158 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
+S + I T +I +++ G +D A FD +++V+ ++M+ Y
Sbjct: 434 ---------RSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQ 484
Query: 218 HEWSAFGSFDGLLSNEEN------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
H +S G +L + + T++ DL ++ G V + K G L SD+
Sbjct: 485 HGFSEEGMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFG--LSSDV 542
Query: 272 LISLTAVCRYQ-----------------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314
++ + V Y N+ WNAM++ +A+NG +A++ + +
Sbjct: 543 SVANSIVTMYSRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEAML-- 600
Query: 315 YIGKSEYR-NNVIVNTVLIDMYAKCGSVDLAPMFFD 349
++E + +++ VL D+ + G ++ A D
Sbjct: 601 ---RTECKPDHISYVAVLSDLLGRAGLLNQAKNLID 633
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 27/216 (12%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LHEWSAFGSFDGLLSNE 233
+ L+DMY KCG++ LA F + ++MI GY + A F + +
Sbjct: 179 IQNSLVDMYIKCGAITLAETIFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERD 238
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR--YQPNVTLWNAM 291
+ T + F + G HG L + +C ++PN + ++
Sbjct: 239 HVSWNTLISV-----FSQYG---HGIRC----------LSTFVEMCNLGFKPNFMTYGSV 280
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+S A + L + I + E+ + + + LIDMYAKCG + LA F+
Sbjct: 281 LSACASISDLKWGAHLHAR-----ILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSL 335
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+++ V + G GLG++ LF+ +R+ +
Sbjct: 336 GEQNQVSWTCFISGVAQFGLGDDALALFNQMRQASV 371
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 184/452 (40%), Gaps = 81/452 (17%)
Query: 5 WVAPNGC---TPPLVLKACVALPSLLMGPRVHGQIFSLGFL-VCYLFDGLFDRTIVFLDL 60
W+ GC T LKAC +L G +H Q GF V ++ + L
Sbjct: 161 WIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTL---------- 210
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMI-----KLGLE 115
T ++ G D YG L E + Q +V I ++G E
Sbjct: 211 -----ATMYNKCGKLD---------YGLRL-----FESMTQRDVVSWTTIIMSNVQIGQE 251
Query: 116 LESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 175
+ PN A+ISG A G E +L ++ + +++
Sbjct: 252 ENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHA-----HVIRRGLVDSLS 306
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-------LHEWSAFGSFDG 228
V ++ MY+KC +DLA F +D++ S MI GY ++ ++ +G
Sbjct: 307 VANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREG 366
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288
NE + + L ++ LEQGK +H ++ +GLE N +
Sbjct: 367 PRPNE-FAFASVLSVCGNMAILEQGKQLHAHVLCVGLE----------------QNTMVQ 409
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG----SVDLA 344
+A+I+ Y+K G +EA K+F + +EY NN++ T +I+ YA+ G ++DL
Sbjct: 410 SALINMYSKCGSIKEASKIFDE--------AEY-NNIVSWTAMINGYAEHGYSQEAIDLF 460
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLAR 403
L D V A+ GL + G+ F+ + K H I P HY ++DLL R
Sbjct: 461 KKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCR 520
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
AG N A I +MP + V LL A +I
Sbjct: 521 AGRLNDAESMIQSMPFQRDDVVWSTLLRACRI 552
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 51/295 (17%)
Query: 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY- 215
F + + Y K+++ N+V V + L+DMY K G VD + F ++VV +A+I G
Sbjct: 86 FGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLV 145
Query: 216 -GLHEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES- 269
+ A F + + + + +AL D L G+ +H +K G S
Sbjct: 146 RAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSF 205
Query: 270 --DLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
+ L ++ C Q +V W +I + G E AVK F + +
Sbjct: 206 VANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETD 265
Query: 316 IGKSEYR------------------------------NNVIVNTVLIDMYAKCGSVDLAP 345
+ +E+ +++ V ++ MY+KC +DLA
Sbjct: 266 VSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLAS 325
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
F +D++ S M GY G GEE + +R+ G P +A V+ +
Sbjct: 326 TVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSV 380
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/429 (23%), Positives = 168/429 (39%), Gaps = 116/429 (27%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
++ GK VH +I+ G + +V +NA+I+ YAK A +F
Sbjct: 112 IDVGKQVHSLVIRYG----------------FHSSVFCQNALINFYAKINDLGSAELIF- 154
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-- 216
D + K + I LI Y++ G V A FD+ D+ +V +AMI Y
Sbjct: 155 ---DGILVK-----DTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQN 206
Query: 217 --LHE-WSAFGSF-DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
H+ W F D + E T L L LE G + + L S+++
Sbjct: 207 GDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKK--LNDNKNLGSNMI 264
Query: 273 ISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
+S + Y + +V W+AMI+GYA+NG + EA++LF
Sbjct: 265 VSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQ 324
Query: 316 IGKSEYR------------------------------NNVIVNTVLIDMYAKCGSVDLAP 345
I ++ +NV V + L+ MY+KCG++ A
Sbjct: 325 IKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKAR 384
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK--------------------- 384
FD+ +D V ++M +G ++G E+ L++ +++
Sbjct: 385 QIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAG 444
Query: 385 ---------------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
H I P +H+A +VDL R+G A++FI M +E + + L
Sbjct: 445 HVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTL 504
Query: 430 LSAWKIPMQ 438
LSA +I +
Sbjct: 505 LSASRIHLN 513
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 171/412 (41%), Gaps = 98/412 (23%)
Query: 88 TALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN-------- 138
T+L +C +LEF GK +H ++I+ GL SD+ + T V Y + + N
Sbjct: 252 TSLLSACVELEFFSLGKQLHSWVIRSGLA--SDVFVGCTLVDMYAKSAAVENSRKIFNTM 309
Query: 139 ---------AMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGK 167
A+ISGY ++ +EA+KLF + D+ IGK
Sbjct: 310 LHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGK 369
Query: 168 SEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
+ + V LI+MYA+ G+++ A F+ +K+ ++ Y
Sbjct: 370 QLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKN-------LISYNTAA 422
Query: 220 WSAFGSFDGLLS-NEENE----------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
+ + D S N E E Y L + + + +G+ +H ++K G
Sbjct: 423 DANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSG---- 478
Query: 269 SDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 328
+ N+ + NA+IS Y+K G E A+++F M Y NVI
Sbjct: 479 ------------FGTNLCINNALISMYSKCGNKEAALQVFND-MGY--------RNVITW 517
Query: 329 TVLIDMYAKCGSVDLAPMFFDRTLDKDV----VMRSAMTVGYGLHGLGEEGWVLFHHIR- 383
T +I +AK G A F L+ V V A+ GL +E W F+ +
Sbjct: 518 TSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHY 577
Query: 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H I PR +HYA +VDLL R+G A +FI +MP + V R L + ++
Sbjct: 578 NHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRV 629
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 103/267 (38%), Gaps = 48/267 (17%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V PN T VLKAC +LP +G ++HGQ L GL V L ++++
Sbjct: 345 VTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKL---------GLSTINCVGNSLINMYA 395
Query: 66 R--TEWSAFGSFDGLLSNEENEYGTALDC---------SCDLEFLEQGKIVHGFMIK--- 111
R T A +F+ L Y TA D S + E G F
Sbjct: 396 RSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVEHTGVGASPFTYACLL 455
Query: 112 -----LGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG 166
+G ++ + + +L + N+ + NA+IS Y+K G E A+++F M Y
Sbjct: 456 SGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFND-MGY--- 511
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---------VMRSAMIVGYGL 217
NVI T +I +AK G A F L+ V V+ + VG
Sbjct: 512 -----RNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLID 566
Query: 218 HEWSAFGS--FDGLLSNEENEYGTALD 242
W F S ++ +S Y +D
Sbjct: 567 EAWKHFNSMHYNHSISPRMEHYACMVD 593
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 133/302 (44%), Gaps = 36/302 (11%)
Query: 130 YQPNVT-LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188
+QP + L N ++ YAK G +A LF K + + ++ L+ YAK G
Sbjct: 53 FQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKML---------KRDIFSWNALLSAYAKSG 103
Query: 189 SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN--EENEYG--TALD 242
S+ FDR +D V + I G+ + + F + E EY + L+
Sbjct: 104 SIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILN 163
Query: 243 CSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVC------RY------QPNVTL 287
S L L GK +HG +I LG + L + A C R+ + N+
Sbjct: 164 ASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVS 223
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
WN MISGYAKNG E+ + L + + S + + + + +I Y +CG VD A
Sbjct: 224 WNLMISGYAKNGQPEKCIGLL-----HQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRV 278
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYS 407
F +KD+V +AM VGY +G E+ +LF+ + IEP + VV A+
Sbjct: 279 FSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASL 338
Query: 408 NH 409
+H
Sbjct: 339 HH 340
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 147/401 (36%), Gaps = 132/401 (32%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------------------------- 170
N I+G++ N +E+++LF + +EY
Sbjct: 124 NTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIV 183
Query: 171 RN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----------- 216
RN NV + L DMYAKCG ++ A FD K++V + MI GY
Sbjct: 184 RNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGL 243
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
LH+ G ++ T + C +++ + V E +
Sbjct: 244 LHQMRLSGHMPDQVT-----MSTIIAAYCQCGRVDEARRVFS-------EFK-------- 283
Query: 277 AVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------------- 321
+ ++ W AM+ GYAKNG E+A+ LF + + +I Y
Sbjct: 284 -----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASL 338
Query: 322 ---------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
NN++V++ LIDMY+KCG +D A F+ ++VV +AM VG
Sbjct: 339 HHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGC 398
Query: 367 GLHGLGEEGWVLFHHI------------------------------------RKHGIEPR 390
+G ++ LF ++ +HG+ P
Sbjct: 399 AQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPT 458
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
HYA +V+LL R G A I NM + + LLS
Sbjct: 459 LDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499
>gi|125557892|gb|EAZ03428.1| hypothetical protein OsI_25566 [Oryza sativa Indica Group]
Length = 519
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 36/274 (13%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V+V T L+DMYAKCG V A FD + ++ V +A+IV YG H+ AF F ++
Sbjct: 148 DVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMM 207
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ +E + L D+ + +H + ++ GL Q +
Sbjct: 208 RHGFCPDELTLASLLSSCADMAAANEATQLHAYTVRRGL----------------QDFLQ 251
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ NA+I Y KNG+ +EA + F + +++ + ++ +A G A
Sbjct: 252 VGNALIMVYGKNGFVQEAKRTFGMI---------HNPDLVTWSSMVSSFAYLGLAKSAID 302
Query: 347 FFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLL 401
FDR L + + +G GL E+G+ F + R + I+P QH A +VDLL
Sbjct: 303 LFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLL 362
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG A++F++NM + + V A L A ++
Sbjct: 363 GRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRM 396
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS ++ V T L D YAK G VD A FD T +D V+ + M Y HGL E W
Sbjct: 34 KSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWD 93
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410
+F +R+ G ++ ++ + A + +HA
Sbjct: 94 VFGSMRRSGFPGDGFTFSALLSVRASSSCYDHA 126
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 175/456 (38%), Gaps = 147/456 (32%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G+ VH F++KLGL C V + N++++ Y K G +E A +F +
Sbjct: 77 GRKVHSFVVKLGL-----------GSC-----VPVANSVLNMYGKCGDSETATTVFERMP 120
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--E 219
+ S + V +NT L G +DLA F+ D+ +V +AMI GY + +
Sbjct: 121 VRSV--SSWNAMVSLNTHL-------GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLD 171
Query: 220 WSAFGSFDGLL-----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--------- 265
A F +L + +E + L +L + GK VH ++++ +
Sbjct: 172 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNA 231
Query: 266 --------------------ELESDL-LISLTAVCR------------------YQPNVT 286
+E+DL +IS TA+ +V
Sbjct: 232 LISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVV 291
Query: 287 LWNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG---------------------- 317
W AMI GY +NG +EA+ LF P+ Y +
Sbjct: 292 AWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRA 351
Query: 318 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DKDVVMRSAMTVGYGLHGLGEEG 375
+S + V+ +I MYA+ GS A FD+ K+ + ++M V HG GEE
Sbjct: 352 IRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 411
Query: 376 WVLFHHIRKHGIEP------------------------------RHQ------HYARVVD 399
LF + + G+EP HQ HYA +VD
Sbjct: 412 VGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVD 471
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LLARAG + A +FI MP+E +LLSA ++
Sbjct: 472 LLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRV 507
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 107/266 (40%), Gaps = 45/266 (16%)
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG---------SFDGLLSNE 233
M+AK G + A F ++D V + M+VG L+ FG + DG +
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVG--LNRAGRFGEAIKTLLDMTADGFTPTQ 58
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
C+ + G+ VH F++KLGL C V + N++++
Sbjct: 59 FTLTNVLSSCAV-TQAGAVGRKVHSFVVKLGL-----------GSC-----VPVANSVLN 101
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
Y K G +E A +F + + S + V +NT L G +DLA F+ D
Sbjct: 102 MYGKCGDSETATTVFERMPVRSV--SSWNAMVSLNTHL-------GRMDLAESLFESMPD 152
Query: 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLA-----RAGYS 407
+ +V +AM GY +GL + LF + + + P V+ A R G
Sbjct: 153 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 212
Query: 408 NHAFKFIMNMPIELRLSVRRALLSAW 433
HA +I+ + V AL+S +
Sbjct: 213 VHA--YILRTEMAYNSQVTNALISTY 236
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 119/486 (24%), Positives = 181/486 (37%), Gaps = 139/486 (28%)
Query: 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC------RY--- 130
EN G LD + D+++L+ K+ I L L I L AVC R+
Sbjct: 1027 ENLCGQILDKNPDIKYLK--KLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFD 1084
Query: 131 ---QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN--------------- 172
+ NV N MI Y N +A+ +F + I Y
Sbjct: 1085 EIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWV 1144
Query: 173 ---------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
NV V LI MY KCG + A D +DVV ++++ G
Sbjct: 1145 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCAR 1204
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
+ G FD AL+ ++E L K G M L + + L +++
Sbjct: 1205 N-----GQFDD-----------ALEVCKEMELLGL-KPDAGTMASLLPAVTNTCLDNVSF 1247
Query: 278 VCRY-----QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------------ 314
V ++ WN MI+ Y N EAV +F + D+
Sbjct: 1248 VKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGD 1307
Query: 315 ------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y+ + + N+++ LIDMYAKCG ++ A FD+ +DVV ++M
Sbjct: 1308 LSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSM 1367
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHG------------------------------------ 386
YG++G G + LF ++ G
Sbjct: 1368 ISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECK 1427
Query: 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQT 446
I PR +H+ +VDLL RAG + A+ FI MP+E V ALLSA ++ + NM+
Sbjct: 1428 IVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRV----YSNMIIG 1483
Query: 447 IRGIDE 452
+ D+
Sbjct: 1484 LLAADQ 1489
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 137/346 (39%), Gaps = 63/346 (18%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGL---FDRTIVFLDLY 61
+ P+ T P VLKA L +G ++H + +G L ++ +GL + + ++
Sbjct: 1122 IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEAC 1181
Query: 62 HLWSRTEWSAFGSFDGLLSN--EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 119
+ S++ L++ ++ AL+ ++E L K G M L + +
Sbjct: 1182 RVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGL-KPDAGTMASLLPAVTNT 1240
Query: 120 LLISLTAVCRY-----QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY----------- 163
L +++ V ++ N MI+ Y N EAV +F + D+
Sbjct: 1241 CLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300
Query: 164 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
Y+ + + N+++ LIDMYAKCG ++ A FD+ +D
Sbjct: 1301 VLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRD 1360
Query: 205 VVMRSAMIVGYGLH-----EWSAFGSFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHG 258
VV ++MI YG++ S F L L+ + + + L L++G+
Sbjct: 1361 VVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGR---- 1416
Query: 259 FMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304
+ KL +T C+ P + + M+ + G +EA
Sbjct: 1417 YYFKL-----------MTEECKIVPRIEHFVCMVDLLGRAGQVDEA 1451
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 140/352 (39%), Gaps = 91/352 (25%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
N+ V+T LID+Y+K G +D A D D+ +A++ GY S A F +
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090
Query: 230 ----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---- 281
+ +E TA+ S L L+QGK + + IKLG +DL +S + Y
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFN--NDLWVSSGVLDMYIKCG 1148
Query: 282 -------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------------- 309
+P+ W MISGY +NG + A+ ++
Sbjct: 1149 DMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K + + K +Y + V T L+DMY KCGSV A F + + VV
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------------------- 389
+AM +G HG +E LF ++ +GI+P
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328
Query: 390 -------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HY+ +VD L RAG A I +MP + S+ RALL A +
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACR 1380
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 117/286 (40%), Gaps = 54/286 (18%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG 224
KS + V V+ L++MY+K G V A F + + D++ + MI Y + E A
Sbjct: 922 KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981
Query: 225 SF-----DGLLSNEENEYGTALDCSC--DLEFLEQGKIVHGFMIKLGL---ELESDLLIS 274
+F DGL ++ CS + E+ G VH + IK G+ S LI
Sbjct: 982 TFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALID 1041
Query: 275 LTAV------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
L + +Y ++ WNA++ GY K+ + +A++ F
Sbjct: 1042 LYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEIT 1101
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
K + Y K + N++ V++ ++DMY KCG + A F
Sbjct: 1102 LATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS 1161
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
D V + M GY +G + ++H +R G++P +A ++
Sbjct: 1162 RPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 38/164 (23%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS------FDGLLSNE 233
LI MY+KCGS+ A FD++ D+D+V ++++ Y S++ + GLL
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLL--- 708
Query: 234 ENEYGTALD---------CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRY 281
E+G ++ F++ + VHG+ +K+G EL DL +S V C+Y
Sbjct: 709 -REFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL--DLFVSGALVNIYCKY 765
Query: 282 --------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
+ + LWN M+ Y +N + +EA++ F +
Sbjct: 766 GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF 809
>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/411 (25%), Positives = 168/411 (40%), Gaps = 90/411 (21%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMI-------------------KLGLELESDLLISLTA 126
+ +AL + E L + KIVH +I KLG+ +E+ ++
Sbjct: 502 FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP 561
Query: 127 VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP---------------------------- 158
QP+ NA+I G+A+N EAVK +
Sbjct: 562 ----QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLL 617
Query: 159 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV-- 213
+ +I + + ++ V LI MYAKCG ++ + FD +K + +AM+
Sbjct: 618 KHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAAN 677
Query: 214 ---GYGLHEWSAFGSFDGLLSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
G G FG + N ++ + L + +L LE+G+ +HG +IKLG E S
Sbjct: 678 AHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFE--S 735
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
DL ++ NA + Y K G + +K+ P+ I +S N+
Sbjct: 736 DLHVT--------------NAAMDMYGKCGEMHDVLKMLPQ----PINRSRLSWNI---- 773
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RK 384
LI +A+ G A F L D V ++ GL +EG + + R+
Sbjct: 774 -LISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTRE 832
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G+ P +H ++DLL R+G +HA FI MP+ R+LL+A +I
Sbjct: 833 FGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRI 883
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 130/339 (38%), Gaps = 96/339 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-------------------------- 171
NAMIS YA +G E+++ F WM + ++
Sbjct: 367 NAMISAYAHHGLCRESLRCF-HWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVV 425
Query: 172 -----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLH 218
+NV + L+ +Y++ G + A + F ++D++ ++M+ Y GL
Sbjct: 426 KLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLK 485
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMI----------------- 261
+ ++++ + +AL + E L + KIVH +I
Sbjct: 486 ILAELLQMGKVMNHVT--FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTM 543
Query: 262 --KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP---------- 309
KLG+ +E+ ++ QP+ WNA+I G+A+N EAVK +
Sbjct: 544 YGKLGMMMEAKKVLQTMP----QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPAN 599
Query: 310 ---------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+ +I + + ++ V LI MYAKCG ++ + F
Sbjct: 600 YITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIF 659
Query: 349 DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
D +K + +AM HG GEE +F +R G+
Sbjct: 660 DGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGV 698
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 58/291 (19%)
Query: 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207
G++E ++ K + + + LI+MY+K G+++ A FD ++
Sbjct: 103 GFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS 162
Query: 208 RSAMIVGY---GLHEWSAFGSFDGL--LSNEENEYGTA---LDCSCDLEFLEQGKIVHGF 259
S M+ GY GL+E A G F + L E N + A CS ++G VHGF
Sbjct: 163 WSTMLSGYVRVGLYE-EAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGF 221
Query: 260 MIKLGLELESDLLISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAE 302
++K G + D+ + V Y NV W +++ GY+ +G
Sbjct: 222 VVKTG--ILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPG 279
Query: 303 EAVKLFPKWMDYYIGKSE------------------------------YRNNVIVNTVLI 332
E + ++ + + ++ + ++V V LI
Sbjct: 280 EVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLI 339
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
M++ SV+ A FD + D++ +AM Y HGL E FH +R
Sbjct: 340 SMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMR 390
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 69/326 (21%)
Query: 131 QPNVTLRNAMISGYAKNGY-AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+PN + ++I+ +++GY A+E ++ ++ K+ +V V T L+ Y G
Sbjct: 192 EPNGFMVASLITACSRSGYMADEGFQVHG-----FVVKTGILGDVYVGTALVHFYGSIGL 246
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL-----------SNEENEYG 238
V A F+ D +VV ++++VGY S G+ +L S +N +
Sbjct: 247 VYNAQKLFEEMPDHNVVSWTSLMVGY-----SDSGNPGEVLNVYQRMRQEGVSGNQNTFA 301
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------------QP 283
T LE G V G +I+ G E + SL ++ +
Sbjct: 302 TVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNEC 361
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR--------------------- 322
++ WNAMIS YA +G E+++ F WM + ++
Sbjct: 362 DIISWNAMISAYAHHGLCRESLRCF-HWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGI 420
Query: 323 ----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+NV + L+ +Y++ G + A + F ++D++ ++M Y G
Sbjct: 421 HGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKC 480
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVV 398
+G + + + G H +A +
Sbjct: 481 LDGLKILAELLQMGKVMNHVTFASAL 506
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 125/322 (38%), Gaps = 68/322 (21%)
Query: 6 VAPNGCTPPLVLKACVALPSLLM-GPRVHGQIFSLGF--------------LVC------ 44
+ N T VL AC A LL G +H I GF C
Sbjct: 596 IPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSS 655
Query: 45 -YLFDGLFDRT------IVFLDLYHLWSRTEWSAFGSFDGLLSN-EENEYGTALDCSCDL 96
Y+FDGL +++ +V + +H FG + N ++ + L + +L
Sbjct: 656 NYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANL 715
Query: 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL 156
LE+G+ +HG +IKLG ESDL ++ NA + Y K G + +K+
Sbjct: 716 AVLEEGQQLHGLVIKLG--FESDLHVT--------------NAAMDMYGKCGEMHDVLKM 759
Query: 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD--------VVMR 208
P+ I +S N +LI +A+ G A F L V +
Sbjct: 760 LPQ----PINRSRLSWN-----ILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLL 810
Query: 209 SAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL-EQGKIVH--GFMIKLGL 265
SA G + E A+ +D ++ E + C C ++ L G++ H GF+ ++ +
Sbjct: 811 SACNHGGLVDEGLAY--YDS-MTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPV 867
Query: 266 ELESDLLISLTAVCRYQPNVTL 287
SL A CR N+ L
Sbjct: 868 PPNDLAWRSLLAACRIHGNLEL 889
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%)
Query: 299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
G++E ++ K + + + LI+MY+K G+++ A FD ++
Sbjct: 103 GFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS 162
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406
S M GY GL EE LF + G+EP A ++ +R+GY
Sbjct: 163 WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGY 210
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 124/296 (41%), Gaps = 87/296 (29%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
V L+DMYAKC V+ A F+R L KD+V + MI Y + +A+ S +L +
Sbjct: 138 VCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA--DCNAYESL--VLFDRMR 193
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295
E G D K+ + VT+ NA
Sbjct: 194 EEGVVPD-------------------KVAM-------------------VTVVNAC---- 211
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
AK G A ++ + YI ++ + +VI+ T +IDMYAKCGSV+ A FDR +K+
Sbjct: 212 AKLGAMHRA-----RFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKN 266
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHI--------------------------------- 382
V+ SAM YG HG G++ LFH +
Sbjct: 267 VISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFN 326
Query: 383 ---RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+H + P +HY +VDLL RAG + A + I M +E + ALL A +I
Sbjct: 327 SMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRI 382
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 92/415 (22%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL----VCYLFDGLFDRTIVFLDLY 61
V P+ T P V++ C L +G +H + G L VC ++ + IV D
Sbjct: 97 VTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQ 156
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
L+ R ++ ++ G DC+ + ++ M + G+ + +
Sbjct: 157 RLFERMLSKDLVTWTVMI-------GAYADCNA-----YESLVLFDRMREEGVVPDKVAM 204
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
+++ C AK G A ++ + YI ++ + +VI+ T +I
Sbjct: 205 VTVVNAC----------------AKLGAMHRA-----RFANDYIVRNGFSLDVILGTAMI 243
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTAL 241
DMYAKCGSV+ A FDR +K+V+ SAMI YG H A+
Sbjct: 244 DMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYH----------------GRGKDAI 287
Query: 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA 301
D L + C PN + +++ + G
Sbjct: 288 D-----------------------------LFHMMLSCAILPNRVTFVSLLYACSHAGLI 318
Query: 302 EEAVKLFPK-WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR-TLDKDVVMR 359
EE ++ F W ++ + R +V T ++D+ + G +D A + T++KD +
Sbjct: 319 EEGLRFFNSMWEEHAV-----RPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLW 373
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ-HYARVVDLLARAGYSNHAFKF 413
SA+ +H E + + + ++P++ HY + ++ A+AG KF
Sbjct: 374 SALLGACRIHSKMELAEKAANSLLE--LQPQNPGHYVLLSNIYAKAGKWEKVAKF 426
>gi|354805211|gb|AER41628.1| pentatricopeptide [Oryza nivara]
gi|354805240|gb|AER41654.1| pentatricopeptide [Oryza rufipogon]
Length = 520
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 36/274 (13%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLL 230
+V+V T L+DMYAKCG V A FD + ++ V +A+IV YG H+ AF F ++
Sbjct: 149 DVVVATALLDMYAKCGQVAEASRVFDAMVLRNTVSWNAIIVCYGKHDRGKEAFDLFVSMM 208
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ +E + D+ + +H + ++ GL Q +
Sbjct: 209 RHGFCPDELTLASLFSSCADMAAANEATQLHAYTVRRGL----------------QDFLQ 252
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
+ NA+I Y KNG+ +EA + F + +++ + ++ +A G A
Sbjct: 253 VGNALIMAYGKNGFVQEAKRTFGMI---------HNPDLVTWSSMVSSFAYLGLAKSAID 303
Query: 347 FFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLL 401
FDR L + + +G GL E+G+ F + R + I+P QH A +VDLL
Sbjct: 304 LFDRMLQQGIRADGIAFLGVLSACSHAGLIEDGFKYFLLMTRDYKIDPTPQHLACLVDLL 363
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG A++F++NM + + V A L A ++
Sbjct: 364 GRAGRIRDAYEFLVNMSCDANVDVIGAFLGACRM 397
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
KS ++ V T L D YAK G VD A FD T +D V+ + M Y HGL E W
Sbjct: 34 KSGSGSDARVATALADAYAKSGLVDRARRVFDETPLRDQVLWNVMVSCYSSHGLVRECWD 93
Query: 378 LFHHIRKHG 386
+F +R+ G
Sbjct: 94 VFGSMRRSG 102
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 175/456 (38%), Gaps = 147/456 (32%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G+ VH F++KLGL C V + N++++ Y K G +E A +F +
Sbjct: 183 GRKVHSFVVKLGL-----------GSC-----VPVANSVLNMYGKCGDSETATTVFERMP 226
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--E 219
+ S + V +NT L G +DLA F+ D+ +V +AMI GY + +
Sbjct: 227 VRSV--SSWNAMVSLNTHL-------GRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLD 277
Query: 220 WSAFGSFDGLL-----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL--------- 265
A F +L + +E + L +L + GK VH ++++ +
Sbjct: 278 AKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNA 337
Query: 266 --------------------ELESDL-LISLTAVCR------------------YQPNVT 286
+E+DL +IS TA+ +V
Sbjct: 338 LISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVV 397
Query: 287 LWNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG---------------------- 317
W AMI GY +NG +EA+ LF P+ Y +
Sbjct: 398 AWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRA 457
Query: 318 -KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DKDVVMRSAMTVGYGLHGLGEEG 375
+S + V+ +I MYA+ GS A FD+ K+ + ++M V HG GEE
Sbjct: 458 IRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 517
Query: 376 WVLFHHIRKHGIEP------------------------------RHQ------HYARVVD 399
LF + + G+EP HQ HYA +VD
Sbjct: 518 VGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVD 577
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LLARAG + A +FI MP+E +LLSA ++
Sbjct: 578 LLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRV 613
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 112/278 (40%), Gaps = 45/278 (16%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG------ 224
R NV L+ M+AK G + A F ++D V + M+VG L+ FG
Sbjct: 95 RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG--LNRAGRFGEAIKTL 152
Query: 225 ---SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
+ DG + C+ + G+ VH F++KLGL C
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAV-TQAGAVGRKVHSFVVKLGL-----------GSC-- 198
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
V + N++++ Y K G +E A +F + + S + V +NT L G +
Sbjct: 199 ---VPVANSVLNMYGKCGDSETATTVFERMPVRSV--SSWNAMVSLNTHL-------GRM 246
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDL 400
DLA F+ D+ +V +AM GY +GL + LF + + + P V+
Sbjct: 247 DLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSA 306
Query: 401 LA-----RAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
A R G HA +I+ + V AL+S +
Sbjct: 307 CANLGNVRIGKQVHA--YILRTEMAYNSQVTNALISTY 342
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 140/352 (39%), Gaps = 91/352 (25%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
N+ V+T LID+Y+K G +D A D D+ +A++ GY S A F +
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090
Query: 230 ----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---- 281
+ +E TA+ S L L+QGK + + IKLG +DL +S + Y
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFN--NDLWVSSGVLDMYIKCG 1148
Query: 282 -------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------------- 309
+P+ W MISGY +NG + A+ ++
Sbjct: 1149 DMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIK 1208
Query: 310 -----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
K + + K +Y + V T L+DMY KCGSV A F + + VV
Sbjct: 1209 ASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVF 1268
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP----------------------------- 389
+AM +G HG +E LF ++ +GI+P
Sbjct: 1269 WNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMF 1328
Query: 390 -------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+HY+ +VD L RAG A I +MP + S+ RALL A +
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACR 1380
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 117/286 (40%), Gaps = 54/286 (18%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFG 224
KS + V V+ L++MY+K G V A F + + D++ + MI Y + E A
Sbjct: 922 KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981
Query: 225 SF-----DGLLSNEENEYGTALDCSC--DLEFLEQGKIVHGFMIKLGL---ELESDLLIS 274
+F DGL ++ CS + E+ G VH + IK G+ S LI
Sbjct: 982 TFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALID 1041
Query: 275 LTAV------------CRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
L + +Y ++ WNA++ GY K+ + +A++ F
Sbjct: 1042 LYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEIT 1101
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
K + Y K + N++ V++ ++DMY KCG + A F
Sbjct: 1102 LATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS 1161
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
D V + M GY +G + ++H +R G++P +A ++
Sbjct: 1162 RPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 38/164 (23%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS------FDGLLSNE 233
LI MY+KCGS+ A FD++ D+D+V ++++ Y S++ + GLL
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLL--- 708
Query: 234 ENEYGTALD---------CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRY 281
E+G ++ F++ + VHG+ +K+G EL DL +S V C+Y
Sbjct: 709 -REFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL--DLFVSGALVNIYCKY 765
Query: 282 --------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311
+ + LWN M+ Y +N + +EA++ F +
Sbjct: 766 GLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF 809
>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
Length = 540
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 114/474 (24%), Positives = 181/474 (38%), Gaps = 125/474 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPR----VHGQIFSLGFLVCYLFDGLFDRTIV 56
M+ V P G T +L+AC +LL PR HGQI GF +F +
Sbjct: 1 MRAQGVPPYGFTFTFLLRAC----ALLGLPRPCGCFHGQIVRCGF-----GSDVFVQN-A 50
Query: 57 FLDLYH------LWSRTEWSAFGSFDGLLSNEENEYGTAL-------DCSCDLEFLE--- 100
+D+YH +A FD ++ + + + + D + + F E
Sbjct: 51 LMDVYHRCGGGGGGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMP 110
Query: 101 QGKIVHGFMIKLGLELESDLLISLTAVCRY-QPNVTLRNAMISGYAKNGYAEEAVKLFPK 159
+ +V + G D++ + R N N MISGYA +G E A +F +
Sbjct: 111 ERNVVSWNTVVAGFARMGDMVTAWAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR 170
Query: 160 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219
MD + +V+ T ++ YAK G +D A FD K++V +AMI GY
Sbjct: 171 -MD--------QKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGY---- 217
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279
N + Y AL + L LE
Sbjct: 218 ------------NHNSRYDEALR-TFQLMMLEG--------------------------- 237
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
R++P+ +++S A+ G E + W+ +IGKS V + LIDM+AKCG
Sbjct: 238 RFRPDEATLVSVVSACAQLGSVE-----YCNWISSFIGKSNIHLTVALGNALIDMFAKCG 292
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------- 372
V A F + + ++ + M G+ +GL
Sbjct: 293 DVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALA 352
Query: 373 --------EEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
+EGW +F+ + ++ I+PR +HY +VDLL RA + K I +
Sbjct: 353 ACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAELIEYVSKKITEL 406
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 112/278 (40%), Gaps = 40/278 (14%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDL-------APMFFDRTLDKDVVMRSAMIVGYGL 217
I + + ++V V L+D+Y +CG A FD +D+DVV ++ IVG +
Sbjct: 36 IVRCGFGSDVFVQNALMDVYHRCGGGGGGGGGVGAARQVFDEMVDRDVVSWNS-IVGVYM 94
Query: 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A G+ E + + +V + G D++ +
Sbjct: 95 SSGDATGAMGFF------------------EAMPERNVVSWNTVVAGFARMGDMVTAWAV 136
Query: 278 VCRY-QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA 336
R N WN MISGYA +G E A +F + MD + +V+ T ++ YA
Sbjct: 137 FDRMPSRNAVSWNLMISGYATSGDVEAARSVFDR-MD--------QKDVVSWTAMVSAYA 187
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYA 395
K G +D A FD K++V +AM GY + +E F + G P
Sbjct: 188 KIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLV 247
Query: 396 RVVDLLARAG---YSNHAFKFIMNMPIELRLSVRRALL 430
VV A+ G Y N FI I L +++ AL+
Sbjct: 248 SVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALI 285
>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 520
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 155/375 (41%), Gaps = 93/375 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY--------------------------- 163
+P ++ N MISGY K+G+ +E + L +W+ Y
Sbjct: 97 KPTLSAYNYMISGYLKHGFLKELL-LLVQWISYSGEKADGYTLSMVLKASNSLGSNMLMP 155
Query: 164 ---------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
I K + + ++ T L+D Y K G ++ A F+ D++VV ++MI G
Sbjct: 156 RSLCRLVHARIIKCDVELDDVLITALVDAYVKSGKLESARTVFETMKDENVVCCTSMISG 215
Query: 215 YGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLI 273
Y G + + E + T + + + +V GF S D+ I
Sbjct: 216 Y---------MNQGFVEDAEEIFNT----TKVKDIVVYNAMVEGFSRSAETAKRSVDMYI 262
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 333
S+ + PN++ + ++I + E ++ + M KS ++ + + L+D
Sbjct: 263 SMQRAS-FHPNISTFASVIGACSVLTCHEVGQQVHAQIM-----KSGVYTHIKMGSSLLD 316
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-- 391
MYAKCG +D A FD+ +K+V ++M GYG +G EE LF +++ IEP +
Sbjct: 317 MYAKCGGIDDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNYVT 376
Query: 392 ----------------------------------QHYARVVDLLARAGYSNHAFKFIMNM 417
+HYA +VDL+ RAG N AF+F+ M
Sbjct: 377 FLGVLSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACMVDLMGRAGELNKAFEFVRAM 436
Query: 418 PIELRLSVRRALLSA 432
P V ALLS+
Sbjct: 437 PERHNSDVWAALLSS 451
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 103/251 (41%), Gaps = 47/251 (18%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH------ 218
I K+ + ++ ++ L+ ++ KCG + A FD + + MI GY H
Sbjct: 60 IIKTGFIPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGFLKEL 119
Query: 219 ----EWSAFG--SFDG----LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 268
+W ++ DG ++ N G+ + L ++VH +IK +EL+
Sbjct: 120 LLLVQWISYSGEKADGYTLSMVLKASNSLGSNMLMPRSL-----CRLVHARIIKCDVELD 174
Query: 269 SDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 328
D+LI+ A++ Y K+G E A +F D NV+
Sbjct: 175 -DVLIT---------------ALVDAYVKSGKLESARTVFETMKD---------ENVVCC 209
Query: 329 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV-LFHHIRKHGI 387
T +I Y G V+ A F+ T KD+V+ +AM G+ + V ++ +++
Sbjct: 210 TSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSAETAKRSVDMYISMQRASF 269
Query: 388 EPRHQHYARVV 398
P +A V+
Sbjct: 270 HPNISTFASVI 280
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 115/511 (22%), Positives = 189/511 (36%), Gaps = 172/511 (33%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELES-------------DLLISLTAVCRYQPNVTLR---N 138
+L+ L QGK +H +I LG E DLL + N+ N
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITE-NSNILHPLPWN 163
Query: 139 AMISGYAKNGYAEEAVKLFPKW----------------------MDYYIGKSEYRN---- 172
+IS Y +NG EA+ + + +D GK + +
Sbjct: 164 LLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINAS 223
Query: 173 ----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG------------ 216
N+ V+ L+ MYAK G + A F+ L++D V + MI GY
Sbjct: 224 CLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELF 283
Query: 217 -----------LHEWSAF-------GSFDGLLS--NEENEYGTALD----------CSCD 246
+ W+ G+F+ L + YG +D CS
Sbjct: 284 GKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACS-H 342
Query: 247 LEFLEQGKIVHGFMIKL---GLELESDLLISLTAVCRY------------QPNVTLWNAM 291
+ ++ G+ +HG I+ G++ + LI++ + C+Y N+ WN+M
Sbjct: 343 IGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSM 402
Query: 292 ISGYAKNGYAEEAVKLF---------PKWMD----------------------YYIGKSE 320
+SGY +EEA LF P ++ Y + ++
Sbjct: 403 LSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAG 462
Query: 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
+++ +++ L+DMYA+ G V A FD +D V +++ GYG+ G G E LF
Sbjct: 463 FKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFD 522
Query: 381 HIRK------------------------------------HGIEPRHQHYARVVDLLARA 404
++K +GI PR +H+A +VDL RA
Sbjct: 523 EMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRA 582
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G + A + I MP ++ LL A +I
Sbjct: 583 GLLHKAKEMITRMPYRPSSAMWATLLGACRI 613
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 142/373 (38%), Gaps = 114/373 (30%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
G+ +HG +KLGL ++ +RNA I+ YA G A+EA+ LF
Sbjct: 152 GEALHGMALKLGLAGDA----------------YVRNATIAMYASCGRADEALALF---- 191
Query: 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
G+ + V N+V++ + A+ G VD A FD ++ V SAM+
Sbjct: 192 ----GQCPELDVVACNSVIVAL-ARAGRVDEARSVFDAMPERTVATWSAMV--------- 237
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
+ Y A CS L M G+E +++L+S+ C
Sbjct: 238 -------------SAYARAARCSEALALFSA-------MQADGMEPNANVLVSVLGCC-- 275
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
A++ G W+ YI + N +V T L+DMY KCGSV
Sbjct: 276 ----ASLGALVQG---------------AWVHEYIDRHGVAMNALVVTALVDMYCKCGSV 316
Query: 342 DLAPMFFDRTLDKDVVMRSA---MTVGYGLHGLGEEGWVLFHHIR--------------- 383
D A FD + + S+ M G +HG E LF ++
Sbjct: 317 DDARQVFDAARSQGLAKLSSWNSMMQGLAVHGQWREAVALFSELKSYGLSPDNVTFIAVL 376
Query: 384 ---------------------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
+HG+EP +HY +VD LARAG A I MP+
Sbjct: 377 TAYGHSGMPDEAQAAFASMSSEHGVEPGIEHYGCLVDALARAGRLREAEDAIRAMPMAPD 436
Query: 423 LSVRRALLSAWKI 435
++ ALLS ++
Sbjct: 437 AAIWGALLSGCRL 449
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 134/334 (40%), Gaps = 109/334 (32%)
Query: 183 MYAKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239
MYAKC GSVD + F++ + +V+ +A+I Y + S E
Sbjct: 1 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY-------------VQSGE------ 41
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR------------YQPNVTL 287
CD E +E + MI + + LIS+ A ++ N+
Sbjct: 42 -----CDKEAIE----LFCKMISASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVS 92
Query: 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------ 317
+NA++ GYAKN +EEA LF + D IG
Sbjct: 93 YNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 152
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
K Y++N + LI MY++CG+++ A F+ D++V+ ++M G+ HG
Sbjct: 153 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALE 212
Query: 378 LFHHI------------------------------------RKHGIEPRHQHYARVVDLL 401
+FH + ++HGI PR +HYA +VDLL
Sbjct: 213 MFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLL 272
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R+G A +FI +MP+ V R LL A ++
Sbjct: 273 GRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 306
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 130/571 (22%), Positives = 202/571 (35%), Gaps = 181/571 (31%)
Query: 8 PNGCTP--PLVLKACVALPSLLMGPRVHGQIFSLGFLVC----------YLFDGLFDRTI 55
P+ C +L+ C L +L +G +VH Q+ G VC Y G +
Sbjct: 6 PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 65
Query: 56 VFLDLYHLWSRTEWSAFGS-FDGLLSNEE---------NE--------YGTALDCSCDLE 97
D + W+A + GL EE NE + +L+
Sbjct: 66 RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 125
Query: 98 FLEQGKIVHGFMIKLGLELES-------DLLIS---LTAVCRYQPNVTLR-----NAMIS 142
GK V+ +M+ +G E S D+ I + R+ + + N M+S
Sbjct: 126 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVS 185
Query: 143 GYAKNGYAEEAVKLFPKWM-------------------------------DYYIGKSEYR 171
GY G ++A+ +F K + Y I E
Sbjct: 186 GYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELD 245
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS 231
++++V L+D YAKC SV++A F D+V +AM+ G
Sbjct: 246 SDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGF-------------- 291
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
+YG D LEF ++ I +L +V +WN++
Sbjct: 292 ---TQYG---DGKAALEFFQRMHIACSVFSELSTR-----------------DVVVWNSI 328
Query: 292 ISGYAKNGYAEEAVKLF----------------------PKWMDYYIGKSEYR------- 322
IS A++G + A+ L K GK ++
Sbjct: 329 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGL 388
Query: 323 --NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH 380
N I+N+ LIDMY +CGS+ + FD +D+V + M YG+HG G + LF
Sbjct: 389 DTCNFILNS-LIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQ 447
Query: 381 HIRKHGIEPRH------------------------------------QHYARVVDLLARA 404
R G++P H + YA +VDLL+RA
Sbjct: 448 QFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRA 507
Query: 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G N +FI MP E +V +LL A +I
Sbjct: 508 GQFNETLEFIEKMPFEPNAAVWGSLLGACRI 538
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 145/358 (40%), Gaps = 89/358 (24%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
K+ Y V ++T LI +Y KC + A FD +++VV +AMI GY ++ A
Sbjct: 38 KTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALH 97
Query: 225 SFDGLLSN--EENEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLT 276
F +L + E NE+ T L E G+ +H + K E + S LL
Sbjct: 98 LFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYA 157
Query: 277 AV-----------CRYQPNVTLWNAMISGYAKNGYAEEAVKLF----------------- 308
C + +V A+ISGYA+ G EEA++LF
Sbjct: 158 KAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYAS 217
Query: 309 -------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + ++ + E V++ LIDMY+KCG+++ A F+ +
Sbjct: 218 LLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRT 277
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRK-------------------HG---------- 386
V+ +AM VGY HG G E LF +R+ HG
Sbjct: 278 VISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMF 337
Query: 387 ---------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
IE +HY V+DLL RAG AF+ I MP E ++ +LL A ++
Sbjct: 338 DEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRV 395
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 38/216 (17%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
PN T VL +C +G ++H IF + ++F G LD+Y R
Sbjct: 109 PNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNY-ENHIFVG-----SSLLDMYAKAGRI 162
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
A G F+ L + + C+ I+ G+ +LGL+ E +L
Sbjct: 163 H-EARGVFECLPERD------VVSCT---------AIISGYA-QLGLDEE-----ALELF 200
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFP-----KWMDYYIGKSEYRNNVIVNTVLID 182
CR Q R M S Y A+ K + ++ + E V++ LID
Sbjct: 201 CRLQ-----REGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLID 255
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
MY+KCG+++ A F+ + V+ +AM+VGY H
Sbjct: 256 MYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKH 291
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 142/353 (40%), Gaps = 85/353 (24%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
I K + N+ V T L+DMYAKCGS+ LA FD +++V ++MIVG+ ++ A
Sbjct: 226 IHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRA 285
Query: 223 FGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTA 277
G F +LS ++ + L L L+ GK VHG ++K +GL + L+ +
Sbjct: 286 IGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYC 345
Query: 278 VCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-- 314
C +V WN MI G + E+A F P Y
Sbjct: 346 KCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSS 405
Query: 315 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
++ K+ + N +++ L+ MY KCGS+ A F T + +
Sbjct: 406 LFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHN 465
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFH----------------------HIRK--------- 384
VV +AM + HG E LF H K
Sbjct: 466 VVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFN 525
Query: 385 -----HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
H I+P +HYA +VDLL R G A +FI +MP E V ALL A
Sbjct: 526 SMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGA 578
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 43/204 (21%)
Query: 2 QVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG--------------FLVCYLF 47
+V + P+ + VL AC L L G +VHG I G + C LF
Sbjct: 291 EVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLF 350
Query: 48 D-------GLFDRTIVFLDLYHL---WSRTEWSAFGSFDGLLSN----EENEYGTALDCS 93
+ G DR +V ++ + R A F ++ +E Y + S
Sbjct: 351 EDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHAS 410
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-----RYQ-------PNVTLRN 138
+ L QG ++H ++K G S + L+++ C YQ NV
Sbjct: 411 ASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWT 470
Query: 139 AMISGYAKNGYAEEAVKLFPKWMD 162
AMI+ + ++G A EA+KLF + ++
Sbjct: 471 AMITVFHQHGCANEAIKLFEEMLN 494
>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
Length = 863
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 128/520 (24%), Positives = 196/520 (37%), Gaps = 112/520 (21%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGL 50
M A V P+ T P VL++C +P MG VH + GF + Y G
Sbjct: 180 MMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGD 239
Query: 51 FDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTAL-------------------- 90
D + W+A G N E G L
Sbjct: 240 VMAARKVFDSMTVMDCISWNAM--IAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVT 297
Query: 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT------AVCRYQPNVTLR------- 137
S L + K +HG +K G + SL + R V R
Sbjct: 298 VASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAM 357
Query: 138 --NAMISGYAKNGYAEEAVKLFP------------------------KWMDYYIGKSE-- 169
AMISGY KNG+ ++A++++ +D + E
Sbjct: 358 TWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELA 417
Query: 170 ----YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAF 223
+ + ++V +++MYAK +D A F +KDVV S+MI G+ + + A
Sbjct: 418 ESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEAL 477
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEF---LEQGKIVHGFMIKLGLELESDLLISLTAVCR 280
F +L++ + T + L GK +H +++ G+E E
Sbjct: 478 YYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEG----------- 526
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
Y PN A+I Y K G A W + ++ +V+ ++I + G
Sbjct: 527 YLPN-----ALIDLYVKCGQTGYA------WAQFCAHGAK---DVVSWNIMIAGFVAHGH 572
Query: 341 VDLAPMFFDRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYA 395
D A FF++ + D V A+ G+ EGW LFH + K+ I P +HYA
Sbjct: 573 GDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYA 632
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL+RAG A+ FI MPI +V ALL+ +I
Sbjct: 633 CMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRI 672
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 120/327 (36%), Gaps = 83/327 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKSEYRN--- 172
N M+ GY K+G +EA+ L+ + M D+ +G+ + +
Sbjct: 158 NVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLR 217
Query: 173 -----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227
V V L+ MYAKCG V A FD D + +AMI G+ +
Sbjct: 218 FGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGH-FENGECNAGLE 276
Query: 228 GLLSNEENEYGTAL-------DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL----- 275
L+ +E L S L + K +HG +K G + SL
Sbjct: 277 LFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYA 336
Query: 276 ---------TAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFP---------------- 309
T R + W AMISGY KNG+ ++A++++
Sbjct: 337 SLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIAS 396
Query: 310 --------KWMDYYIGKSE------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+D + E + + ++V +++MYAK +D A F +KD
Sbjct: 397 ALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKD 456
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHI 382
VV S+M G+ + E F H+
Sbjct: 457 VVSWSSMIAGFCFNHRNFEALYYFRHM 483
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 30/138 (21%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS 319
+ +V WN M+ GY K+G +EA+ L+ + M D+ +G+
Sbjct: 151 ERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGRE 210
Query: 320 EYRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ + V V L+ MYAKCG V A FD D + +AM G+ +G
Sbjct: 211 VHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGE 270
Query: 372 GEEGWVLFHHIRKHGIEP 389
G LF + ++P
Sbjct: 271 CNAGLELFLTMLHDEVQP 288
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 147/351 (41%), Gaps = 93/351 (26%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDV-----VMRSAMIVGYGLHEWSAFGSFDGL-LS 231
T LI+MY+ S+D A FD+T ++ + + R+ + G+G + + + + +
Sbjct: 109 TKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIP 168
Query: 232 NEENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISL-----------T 276
++ Y L C + L +G+ +H +++ G + ++ +L
Sbjct: 169 SDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSN 228
Query: 277 AVCRYQ----PNVTLWNAMISGYAKNGYAEEAVKLFPKWM-------------------- 312
A C + NV W+AMI+ YAKNG A EA++LF + M
Sbjct: 229 ASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQAC 288
Query: 313 ------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
YI + + + V + L+ MYA+CG ++L FD+ +DVV +
Sbjct: 289 AALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWN 348
Query: 361 AMTVGYGLHGLG-----------------------------------EEGWVLFHHIR-K 384
++ YG+HG G +EG +LF+ +
Sbjct: 349 SLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVA 408
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HGI P +HYA +VDLL RA A K I NM IE V +LL + +I
Sbjct: 409 HGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRI 459
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 49/188 (26%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISL-----------TAVCRYQ----PNVTLRN 138
C + L +G+ +H +++ G + ++ +L A C + NV +
Sbjct: 186 CFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWS 245
Query: 139 AMISGYAKNGYAEEAVKLFPKWM--------------------------------DYYIG 166
AMI+ YAKNG A EA++LF + M YI
Sbjct: 246 AMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYIL 305
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
+ + + V + L+ MYA+CG ++L FD+ +DVV +++I YG+H + A G
Sbjct: 306 RKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIG 365
Query: 225 SFDGLLSN 232
F+ + N
Sbjct: 366 IFEEMTYN 373
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 121/495 (24%), Positives = 196/495 (39%), Gaps = 114/495 (23%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTIVFLDLYHLW 64
V PN T +VL AC L + G +VH +F GF + GL D ++
Sbjct: 138 VRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLID----------MY 187
Query: 65 SRTEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
++ + A FDG L+ + + + F + V M ++G + L+
Sbjct: 188 AKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLV 247
Query: 123 SL----TAVCRY-----------QPNVTLRNAMISGYAKNGYAEEAVKLFPK-------- 159
++ A+ R PNV N MISG+AK G+AEEA+ F +
Sbjct: 248 TVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKA 307
Query: 160 ----------------WMDY------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
++Y K +NV V + L++MYAKC +D A F
Sbjct: 308 TRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF 367
Query: 198 DRTLDKDVVMRSAMIVGYG----LHEWSAFGSFDGLLSNEENEYG-TALDCSC-DLEFLE 251
+ ++++V+ +AM+ G+ E F S + +E+ T++ +C L +L
Sbjct: 368 NSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLN 427
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL-----------------WNAMISG 294
G +H MIK + S+L ++ V Y + L WNA+I G
Sbjct: 428 FGGQLHTVMIK--NKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485
Query: 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-------------------------- 328
Y + Y +EA +F + + + E IV+
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTS 545
Query: 329 ----TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ LIDMY KCG V A F ++VV +A+ GY + L EE LF I+
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHL-EEAIHLFQEIQM 604
Query: 385 HGIEPRHQHYARVVD 399
G++P +A ++D
Sbjct: 605 VGLKPTEVTFAGLLD 619
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 112/257 (43%), Gaps = 26/257 (10%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--FGSFDGLLSN 232
++ V++D+Y KCG+VD A F R KDV ++++ Y H A SF + ++
Sbjct: 77 LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136
Query: 233 E----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRYQPNV 285
E E + L L+ + G+ VH + K G S LI + A CRY +
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196
Query: 286 TL------------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 333
L W A+I+GY ++G+ EAVK+F + + + + + I +++
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDR-----MQRVGHAPDQITLVTVVN 251
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH 393
Y G + A F + + +VV + M G+ G EE F ++K G++
Sbjct: 252 AYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSS 311
Query: 394 YARVVDLLARAGYSNHA 410
V+ +A N+
Sbjct: 312 LGSVLSAIASLSMLNYG 328
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/428 (23%), Positives = 170/428 (39%), Gaps = 101/428 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY----- 130
L + G+ L L L G +VH K GL+ L+++ A C
Sbjct: 305 LKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAK 364
Query: 131 -------QPNVTLRNAMISGYAKNGYAEEAVKLF-------PKWMDYYIG---------- 166
+ N+ L NAM+ G+A+NG A+E ++ F P+ ++
Sbjct: 365 QVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLH 424
Query: 167 -------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIV 213
K+++ +N+ V L+DMYAK G++ A F+ D V +A+IV
Sbjct: 425 YLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIV 484
Query: 214 GYGLHEWS--AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
GY E++ AF F ++SN +E + + +++ L++G+ H ++K+GL+
Sbjct: 485 GYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDT 544
Query: 268 ES---DLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
+ LI + C NV NA+I+GY G+ EEA+ LF +
Sbjct: 545 STCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQ 603
Query: 313 DYYIGKSEY-------------------------------RNNVIVNTVLIDMYAKCGS- 340
+ +E ++ +V L+ +Y
Sbjct: 604 MVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRF 663
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400
VD +F + K +V+ +A+ GY E+ + H+R I P +A V L
Sbjct: 664 VDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASV--L 721
Query: 401 LARAGYSN 408
A AG S+
Sbjct: 722 RACAGMSS 729
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 92/418 (22%), Positives = 157/418 (37%), Gaps = 111/418 (26%)
Query: 71 AFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLIS 123
AF F ++SN +E + + +++ L++G+ H ++K+GL+ + LI
Sbjct: 495 AFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLID 554
Query: 124 LTAVCRY------------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY- 170
+ C NV NA+I+GY G+ EEA+ LF + + +E
Sbjct: 555 MYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVT 613
Query: 171 ------------------------------RNNVIVNTVLIDMYAKCGS-VDLAPMFFDR 199
++ +V L+ +Y VD +F +
Sbjct: 614 FAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSEL 673
Query: 200 TLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQG 253
K +V+ +A+I GY H A + + S+ ++ + + L + L+ G
Sbjct: 674 QYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNG 733
Query: 254 KIVHGFMIKLGL---ELESDLLISLTAVC----------RYQP---NVTLWNAMISGYAK 297
+ +H + G E+ LI + A C R P NV WN+MI G AK
Sbjct: 734 QEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAK 793
Query: 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
NGYAEEA+++F + I E + + + C
Sbjct: 794 NGYAEEALEIFKQMEQQSIIPDE--------VTFLGVLSACSHA---------------- 829
Query: 358 MRSAMTVGYGLHGLGEEGWVLFH-HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
G EG +F + + + PR H +VD+L R G+ N A +FI
Sbjct: 830 ------------GRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFI 875
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 48/206 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-----VCYLFDGLFDRTI 55
+Q+ + P T +L C L +G ++HGQ+ GFL VC L+ +
Sbjct: 602 IQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQ 661
Query: 56 VFLDLYHLWSRTE-------WSAFGS-------------------FDGLLSNEENEYGTA 89
F+D L+S + W+A S D +L ++ + +
Sbjct: 662 RFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQA-AFASV 720
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC----------RYQP---N 133
L + L+ G+ +H + G E+ LI + A C R P N
Sbjct: 721 LRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNN 780
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPK 159
V N+MI G AKNGYAEEA+++F +
Sbjct: 781 VISWNSMIVGLAKNGYAEEALEIFKQ 806
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 45/217 (20%)
Query: 247 LEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLWNAM 291
L+ L K++H +K+G+ L+ ++++ L C + +V WN++
Sbjct: 54 LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV--------------------- 330
+S Y +G V+ F ++ + +E+ ++++
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF 173
Query: 331 ---------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
LIDMYAKC + A + FD L+ D V +A+ GY G E +F
Sbjct: 174 GFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDR 233
Query: 382 IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
+++ G P VV+ G A K +P
Sbjct: 234 MQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIP 270
>gi|297836444|ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331944|gb|EFH62363.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 723
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 126/530 (23%), Positives = 209/530 (39%), Gaps = 132/530 (24%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------LVCY-----------LF 47
PN T LV+ AC +L G ++HG + GF ++C LF
Sbjct: 133 PNVSTLVLVIHACRSL--WFDGEKIHGYVIRSGFWRISSVQNSILCLYSEFDSLSARKLF 190
Query: 48 DGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNE-----ENEYGTALDC--------SC 94
D + +R ++ WS S S + +L E E T DC +C
Sbjct: 191 DEMSERDVIS------WSVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKAC 244
Query: 95 D-LEFLEQGKIVHGFMIKLGLEL-------------------ESDLLISLTAVCRYQPNV 134
L+ ++ G+ VHGF I+ G +L +S + CR N+
Sbjct: 245 AVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETTCR---NI 301
Query: 135 TLRNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 164
N++++G+ N +EA+++F K +
Sbjct: 302 VSWNSILAGFVYNQRYDEALEMFRLMKKEALEADEVTLVSLLQVCKFFEHPLPCKSIHGV 361
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--A 222
I + Y +N + + L+D Y C VD A FD KDVV S MI G G S A
Sbjct: 362 IIRRGYESNEVALSSLMDAYTSCSLVDDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEA 421
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLE-FLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F + +L +C + L K HG I+ GL +
Sbjct: 422 ISIFCQMRDKPNAITVISLLSACSVSAVLRTSKWAHGIAIRRGLAIN------------- 468
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
++++ +++ YAK G + A + F + + +++ TV+I YA G
Sbjct: 469 --DISVDTSIVDAYAKCGAIDIARRTFDQITE---------KSIVSWTVIISAYAINGLP 517
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLH-----GLGEEGWVLFHHIRKHGIEPRHQHYAR 396
D A FD + +D +A+T L GL ++G ++F + + +P QHY+
Sbjct: 518 DKALASFDE-MKRDSYTPNAVTYLAALSACNHGGLVKKGLMIFRSMVEEDQKPSLQHYSC 576
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQT 446
+VD+L+RAG + A + I N+P ++ +A SAW + N L++
Sbjct: 577 IVDMLSRAGEIDTAMELIKNLPEDV-----KAGASAWGAILSGCRNRLKS 621
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 131/343 (38%), Gaps = 114/343 (33%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K + + K + ++ + L++MY+ CG + A FD+ ++K VV + MI Y
Sbjct: 95 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA-- 152
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
+W L +E IKL +E
Sbjct: 153 QWD--------LPHEA--------------------------IKLFRRME---------- 168
Query: 279 CRYQPNVTLWNAMISGYAKNGYAEEAVKLFP----------------------------- 309
N+ WN MI+G+ ++ EEA+ LF
Sbjct: 169 --IASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALEL 226
Query: 310 -KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
KW+ YI K + +V + T L+DMYAKCGS++ A F +KDV+ +A+ VG +
Sbjct: 227 GKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAM 286
Query: 369 HGLGEEGWVLFHHIR------------------------------------KHGIEPRHQ 392
G G + LFH ++ K+GI+P +
Sbjct: 287 CGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIE 346
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HY +VD+L RAG A I NMP+ V LLSA +I
Sbjct: 347 HYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRI 389
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 160/392 (40%), Gaps = 75/392 (19%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCR-----------------YQPNVTLRNAMI 141
+ Q K +H I GL L + + L + C PN+ N +I
Sbjct: 17 MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76
Query: 142 SGYAKNGYAEEAVKLFPKWMD-YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
Y+++ + A+ F +D +G ++ I++ ++ G + +
Sbjct: 77 RAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGV 136
Query: 201 LDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
D +++A++ Y E A G L N L+ ++ +++G+
Sbjct: 137 ASSDRHVQTALVRFYA--ECCAMGDARKLFDEIPN-----------LDVVQWNVLLNGY- 182
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320
++ GL E+ V +P+ + G A+ G ++ KW+ Y+ K +
Sbjct: 183 VRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQG-----KWIHEYVTKRK 237
Query: 321 Y-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG--------- 370
+ +V + T L+DMYAKCG +D + F+ ++V SAM G+ LHG
Sbjct: 238 WLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCL 297
Query: 371 ---------------------------LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLA 402
L EEG L ++ ++GI P+H+HY+ +VDLL
Sbjct: 298 ERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLC 357
Query: 403 RAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
RAG + A K I MP++ R +V ALLS +
Sbjct: 358 RAGQLDEALKLIRRMPMKPRAAVWGALLSGCR 389
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 32/216 (14%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTI--VFLDLYHL 63
V P+ T P ++ AC +L+G ++H + G DR + + Y
Sbjct: 101 VGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGV-------ASSDRHVQTALVRFY-- 151
Query: 64 WSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 123
E A G L N L+ ++ +++G+ ++ GL E+
Sbjct: 152 ---AECCAMGDARKLFDEIPN-----------LDVVQWNVLLNGY-VRRGLAPEALNAFR 196
Query: 124 LTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLID 182
V +P+ + G A+ G ++ KW+ Y+ K ++ +V + T L+D
Sbjct: 197 NMLVSGVEPDEFCLTTALKGCAQLGALQQG-----KWIHEYVTKRKWLEADVFIGTALVD 251
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
MYAKCG +D + F+ ++V SAMI G+ LH
Sbjct: 252 MYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALH 287
>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 630
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 105/432 (24%), Positives = 170/432 (39%), Gaps = 129/432 (29%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWM-------DYYIG------------------- 166
+V L N++I+GY KN +A+ LF + DY +
Sbjct: 93 SVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIH 152
Query: 167 ----KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
+ + ++V+V L+ MY +CG A FD T ++V + +I G E
Sbjct: 153 GKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCN 212
Query: 223 FGSFDGL-----------LSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLEL--E 268
F S D L + + L C D + G+ +H +++K GL+L +
Sbjct: 213 FTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMD 272
Query: 269 SDLLISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFP-- 309
SD+ + + + Y NV +W AMI+GY +NG ++A+ L
Sbjct: 273 SDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAM 332
Query: 310 -----------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
K + + K E ++V + LIDMY+KCGS
Sbjct: 333 QMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGS 392
Query: 341 VDLAPMFFD-RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------- 386
+D A F+ + KD + S+M YGLHG GEE + ++ + + G
Sbjct: 393 LDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLS 452
Query: 387 -----------------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
I+P + A VVD+L R+G + A +FI MP++
Sbjct: 453 ACSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGP 512
Query: 424 SVRRALLSAWKI 435
SV +LL+A I
Sbjct: 513 SVWGSLLTASVI 524
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 97/470 (20%), Positives = 173/470 (36%), Gaps = 137/470 (29%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIVFLDLYHL 63
P+ T V K L L+ G +HG+ +GF +V ++ R F D +
Sbjct: 127 PDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKV 186
Query: 64 WSRTEWSAFGSFDGLLSN---EENEYGTALD---------------------------CS 93
+ T GSF+ ++S EN T+ D C
Sbjct: 187 FDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCC 246
Query: 94 CDLEFLEQGKIVHGFMIKLGLEL--ESDLLISLTAVCRY-----------------QPNV 134
D + G+ +H +++K GL+L +SD+ + + + Y NV
Sbjct: 247 GDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNV 306
Query: 135 TLRNAMISGYAKNGYAEEAVKLFP-------------------------------KWMDY 163
+ AMI+GY +NG ++A+ L K +
Sbjct: 307 YVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHG 366
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD-RTLDKDVVMRSAMIVGYGLHEWSA 222
+ K E ++V + LIDMY+KCGS+D A F+ + KD + S+MI YGLH
Sbjct: 367 FSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRG- 425
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
E+ I + M++ G ++
Sbjct: 426 ----------------------------EEAIIAYYKMLQQG----------------FK 441
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
P++ ++S +K+G +E + ++ M Y E + V + ++DM + G +D
Sbjct: 442 PDMITVVGVLSACSKSGLVDEGISIYKSLMTKY----EIKPTVEICACVVDMLGRSGQLD 497
Query: 343 LAPMFF-DRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391
A F + LD + ++ +HG + + H+ + +EP +
Sbjct: 498 QALEFIKEMPLDPGPSVWGSLLTASVIHGNSRTRDLAYRHLLE--LEPEN 545
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 106/434 (24%), Positives = 172/434 (39%), Gaps = 130/434 (29%)
Query: 130 YQPNVTLRNAMISGYAK----------------NGYAEEAVKLFP--------------- 158
+ PNV + N+MI GYAK NGY+ + FP
Sbjct: 68 HSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFT-FPFVLKACSFIYDQVSG 126
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K + I KS + NV V T L++MY +C +++ FD+ +VV + +I GY ++
Sbjct: 127 KCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVIN 186
Query: 219 EW--SAFGSFD-----GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----- 266
+ A F G+ +NE + C+ ++ G+ VH + K G +
Sbjct: 187 DQPREALEVFKEMGRWGVEANEVTMVNALIACA-RCRDVDTGRWVHERVCKAGYDPFVFA 245
Query: 267 -----LESDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLF- 308
+ + ++ + A C + + N+ WN MI+ Y + EA+ LF
Sbjct: 246 SNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFF 305
Query: 309 --------PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCG 339
P + Y+ KS ++ + T L+DMYAK G
Sbjct: 306 YMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNG 365
Query: 340 SVDLAPMFFDRTLD-KDVVMRSAMTVGYGLHGLGEEGWVLFH-----------HI----- 382
+ A F+ +L+ KDVVM ++M +HG G E LF HI
Sbjct: 366 ELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGV 425
Query: 383 ---------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
+ +GI P +HY+ +VDLL+RAG+ A K + M I
Sbjct: 426 LFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMETMSIRP 485
Query: 422 RLSVRRALLSAWKI 435
+++ ALL+ +I
Sbjct: 486 NIAIWGALLNGCQI 499
>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1028
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 150/379 (39%), Gaps = 71/379 (18%)
Query: 75 FDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCR-- 129
F+ L+ + + L S +E G+ +H MIK+GLE S L+ + A C
Sbjct: 152 FENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRL 211
Query: 130 ----------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
PN + SGY K G EEAV +F + + +R + +
Sbjct: 212 GDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFER-----MRGEGHRPDHLAFVT 266
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL----LSNE 233
+I+ Y G + A + F DVV + MI G+G E A F + + +
Sbjct: 267 VINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKST 326
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY--------- 281
+ G+ L + L+ G +VH IKLGL L+S+ + C
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386
Query: 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLF--PKWMDYYIG------------------- 317
+ N LWNAMI GYA NG + + ++LF K Y I
Sbjct: 387 ALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEM 446
Query: 318 ---------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
K + N+ V L+DMYAKCG+++ A F+ D+D V + + GY
Sbjct: 447 GSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQ 506
Query: 369 HGLGEEGWVLFHHIRKHGI 387
E + LF + GI
Sbjct: 507 DENESEAFDLFMRMNSCGI 525
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 162/421 (38%), Gaps = 110/421 (26%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
L+ G +VH IKLGL L+S+ + C + N L NAMI G
Sbjct: 343 LDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRG 402
Query: 144 YAKNGYAEEAVKLFP--KWMDYYIG----------------------------KSEYRNN 173
YA NG + + ++LF K Y I K + N
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKN 462
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
+ V L+DMYAKCG+++ A F+ D+D V + +I GY + + + +FD L
Sbjct: 463 LFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGY-VQDENESEAFD--LFMR 519
Query: 234 ENEYGTALDCSC---------DLEFLEQGKIVHGFMIKLGLEL---ESDLLISLTAVC-- 279
N G D +C ++ L QGK VH +K GL+ LI + + C
Sbjct: 520 MNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGI 579
Query: 280 --------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
P +V NA+I+GY++N EEAV LF + + + SE IV
Sbjct: 580 IEDARKVFSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIVEA 638
Query: 330 V-------------------------------LIDMYAKCGSV-DLAPMFFDRTLDKDVV 357
L+ +Y + + +F + + K +V
Sbjct: 639 CHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIV 698
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA---RVVDLLA--RAGYSNHAFK 412
+ + M G+ +G EE + +R G P + RV +L+ R G + H+
Sbjct: 699 LWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLI 758
Query: 413 F 413
F
Sbjct: 759 F 759
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 162/419 (38%), Gaps = 107/419 (25%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLEL---ESDLLISLTAVC----------RYQP- 132
+ L ++ L QGK VH +K GL+ LI + + C P
Sbjct: 533 ASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPE 592
Query: 133 -NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV------------ 179
+V NA+I+GY++N EEAV LF + + + SE IV
Sbjct: 593 WSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQF 651
Query: 180 -------------------LIDMYAKCGSV-DLAPMFFDRTLDKDVVMRSAMIVGY---G 216
L+ +Y + + +F + + K +V+ + M+ G+ G
Sbjct: 652 HGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNG 711
Query: 217 LHEWS----AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELES 269
+E + DG L ++ + T L L L +G+ +H + L EL S
Sbjct: 712 FYEEALKFYKEMRHDGALPDQAT-FVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTS 770
Query: 270 DLLISLTAVC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316
+ LI + A C R + NV WN++I+GYAKNGYAE+A+K+F +I
Sbjct: 771 NTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHI 830
Query: 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
E I ++ + G V F+ M +G
Sbjct: 831 MPDE-----ITFLGVLTACSHAGKVSDGRKIFE------------MMIG----------- 862
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++GIE R H A +VDLL R GY A FI ++ + +LL A +I
Sbjct: 863 -------QYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRI 914
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 110/267 (41%), Gaps = 35/267 (13%)
Query: 165 IGKSEYRNNVIVN--------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY- 215
IGK+ + ++I+ ++D+YAKC V A F+ +L+KDV ++M+ Y
Sbjct: 78 IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFN-SLEKDVTAWNSMLSMYS 136
Query: 216 -----GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES- 269
G S F+ L+ + + L S +E G+ +H MIK+GLE S
Sbjct: 137 SIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSY 196
Query: 270 --DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
L+ + A C PN W + SGY K G EEAV +F +
Sbjct: 197 CGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFER----- 251
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
+ +R + + +I+ Y G + A + F DVV + M G+G G
Sbjct: 252 MRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVA 311
Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLA 402
F ++RK ++ V+ +
Sbjct: 312 IEYFLNMRKSSVKSTRSTLGSVLSAIG 338
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 133/352 (37%), Gaps = 86/352 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------- 171
P+V N MISG+ K G A++ F + +
Sbjct: 289 SPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348
Query: 172 -----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+N+ V + L+ MY+KC ++ A F+ +++ V+ +AMI GY H
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYA-HNG 407
Query: 221 SAFGSFDGLLSNEENEYG------TALDCSCDLEF-LEQGKIVHGFMIKLGLE---LESD 270
+ + + + + Y T+L +C + LE G H +IK L +
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGN 467
Query: 271 LLISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---- 313
L+ + A C + NV+ WN +I GY ++ EA LF +
Sbjct: 468 ALVDMYAKCGALEDARQIFEHMCDRDNVS-WNTIIGGYVQDENESEAFDLFMRMNSCGIV 526
Query: 314 ------------------YYIGKSEYRNNVI--------VNTVLIDMYAKCGSVDLAPMF 347
Y GK + +V + LIDMY+KCG ++ A
Sbjct: 527 SDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKV 586
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
F + VV +A+ GY + L EE VLF + G+ P +A +V+
Sbjct: 587 FSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIVE 637
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 44/213 (20%)
Query: 250 LEQGKIVHGFMIKLGLELESDL---LISLTAVC-----------RYQPNVTLWNAMISGY 295
L GK VH + LG++ E L ++ L A C + +VT WN+M+S Y
Sbjct: 76 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLEKDVTAWNSMLSMY 135
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT-------------------------- 329
+ G + ++ F + I +++ +++++T
Sbjct: 136 SSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNS 195
Query: 330 ----VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
L+DMYAKC + A FD +D + V + + GY GL EE ++F +R
Sbjct: 196 YCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGE 255
Query: 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
G P H + V++ G A MP
Sbjct: 256 GHRPDHLAFVTVINTYISLGKLKDARLLFGEMP 288
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 155/421 (36%), Gaps = 124/421 (29%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLF--PKWMDY-------------------------- 163
PN+ L N+M GYA++ E V LF K MD
Sbjct: 99 PNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQV 158
Query: 164 --YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-- 219
++ K +R N V T LIDMY+ G+V A F +++VV ++MI GY L
Sbjct: 159 HCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADL 218
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLE---FLEQGKIVH---------------GFMI 261
SA FD L+ E + + S +E +E K+ H G+
Sbjct: 219 VSARRLFD--LAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYAT 276
Query: 262 KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------ 309
+E L + + N+ WNA+I GYA NG E + F
Sbjct: 277 NGNVEALEGLFEEMP-----ERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPND 331
Query: 310 -------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
KW+ Y S + NV V L+DMYAKCG ++ A F
Sbjct: 332 ATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRG 391
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------------------ 386
KD++ + + G +H G + LF ++ G
Sbjct: 392 MDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG 451
Query: 387 ------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I P+ +HY +VD+LARAG A F+ MP+E + LL A +
Sbjct: 452 FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACR 511
Query: 435 I 435
I
Sbjct: 512 I 512
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 31/219 (14%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FG 224
++ N + L+ + A + A FD+ D ++ + ++M GY E F
Sbjct: 66 FQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFF 125
Query: 225 SFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
G+ + + L + L +G+ VH F+IK C ++
Sbjct: 126 QMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK----------------CGFRG 169
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
N + +I Y+ G +A K+F + + NV+ T +I+ Y +
Sbjct: 170 NPFVGTTLIDMYSAGGTVGDAYKIFCEM---------FERNVVAWTSMINGYILSADLVS 220
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI 382
A FD ++DVV+ + M GY G E LFH +
Sbjct: 221 ARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEM 259
>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
Length = 623
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 161/416 (38%), Gaps = 122/416 (29%)
Query: 140 MISGYAKNGYAEEAVKLFPKWMDYY------------------------------IGKSE 169
+IS YA GY EA++L+ + + I S
Sbjct: 175 IISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASG 234
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFD 227
+V V T ++ Y KC +VD A FDR +DKD+V +AMI Y + E AF +
Sbjct: 235 VETDVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYL 294
Query: 228 GLLSNEENEYGTAL-----DCS--CDLE-------------FLEQGKIVHGFM---IKLG 264
++ N+ L CS C +E +L +V+ + K G
Sbjct: 295 EMVENQMRPNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCG 354
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK-------------- 310
LE+ + + A R NV WN MI A+ EA++++ +
Sbjct: 355 -SLENATRVFIEATNR-TTNVITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYG 412
Query: 311 --------WMDYYIGKSEYRNNV-------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
+ D+ G+ + ++ +V LI +Y CG+++ A F+ K+
Sbjct: 413 TVLAVCANFGDFTTGREVHSRSLATGCCSDVVQNSLICLYGGCGNLEAAQTAFESVASKN 472
Query: 356 VVMRSAMTVGYG------------------------------LH-----GLGEEGWVLFH 380
VV S++ Y LH GL +EGW F
Sbjct: 473 VVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEGWSYFL 532
Query: 381 HIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
++ H +EP +HY +V+LLA++G A F+ MP++ S R+LL A ++
Sbjct: 533 SMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLGACEV 588
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/410 (22%), Positives = 159/410 (38%), Gaps = 108/410 (26%)
Query: 99 LEQGKIVHGFMIKLGLELES---DLLISLTAVCR------------YQPNVTLRNAMISG 143
L G+ VH MI GL+ ++ +LL+ + C +Q NV +IS
Sbjct: 18 LADGRRVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFRGIHQRNVFSWTILISL 77
Query: 144 YAKNGYAEEAVKLFPKWMDY-----------------------YIGKSEYR--------N 172
+NG A E ++L K+MD +GK +
Sbjct: 78 LVQNGEASEGLELL-KFMDLEGTEANKITFISLLGACSVTGDLSLGKKIHERVRAKGLET 136
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
++I L++MY C S+D A + F+R + +DVV + +I Y H + L
Sbjct: 137 DIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISAYA-HAGYPLEALQ-LYRR 194
Query: 233 EENEYG--------TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--- 281
E E+ + L+ L L +GK +H ++ G +E+D+ + V Y
Sbjct: 195 MEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASG--VETDVFVGTAVVSFYGKC 252
Query: 282 --------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
++ WNAMI YA+N E+A L+ + ++ +
Sbjct: 253 EAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLL 312
Query: 317 -----------GKSEYR--------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK--D 355
G S +R ++ V LI+MYAKCGS++ A F ++ +
Sbjct: 313 DSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCGSLENATRVFIEATNRTTN 372
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
V+ + M V L E ++H + + GI+ Y V+ + A G
Sbjct: 373 VITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFG 422
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 146/399 (36%), Gaps = 101/399 (25%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDY-----------YIGKS---EYRN--------NVI 175
NA++S Y +N EEA LF ++ ++ K E R +V+
Sbjct: 192 NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVV 251
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNE 233
+I YA+ G +D A FD + +DV +AM+ GY + A FD +
Sbjct: 252 SWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERN 311
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL------ 287
E + L E +E K + M + + ++ + L
Sbjct: 312 EVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPK 371
Query: 288 -----WNAMISGYAKNGYAEEAVKLF------------------------------PKWM 312
W AMI+GY+++G++ EA++LF K +
Sbjct: 372 RDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQL 431
Query: 313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+ K Y V L+ MY KCGS++ A F KD+V + M GY HG G
Sbjct: 432 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFG 491
Query: 373 EEGWVLFHHIRKHGIEP------------------------------------RHQHYAR 396
E F +++ G++P QHYA
Sbjct: 492 EVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYAC 551
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAG A + NMP E ++ LL A ++
Sbjct: 552 MVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRV 590
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 116/310 (37%), Gaps = 65/310 (20%)
Query: 138 NAMISGYAKNGYAEEAVKLFPK--------WMDYYIGKSEYRN--------------NVI 175
N MISGY +NG E A KLF + W G RN +V
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEEN 235
++ YA+ G VD A FDR +K+ V +A++ Y + S L + EN
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQN--SKMEEACMLFKSREN 216
Query: 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ------------- 282
+ +C F+++ KIV + + D++ T + Y
Sbjct: 217 WALVSWNCLLG-GFVKKKKIVEARQFFDSMNVR-DVVSWNTIITGYAQSGKIDEARQLFD 274
Query: 283 ----PNVTLWNAMISGYAKNGYAEEAVKLFPK--------WMDYYIGKSEYR-------- 322
+V W AM+SGY +N EEA +LF K W G +
Sbjct: 275 ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKEL 334
Query: 323 ------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
NV +I YA+CG + A FD+ +D V +AM GY G E
Sbjct: 335 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEAL 394
Query: 377 VLFHHIRKHG 386
LF + + G
Sbjct: 395 RLFVQMEREG 404
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 94/267 (35%), Gaps = 86/267 (32%)
Query: 138 NAMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 194
N IS Y + G EA+++F P+W + + +I Y + G +LA
Sbjct: 68 NVAISSYMRTGRCNEALRVFKRMPRW------------SSVSYNGMISGYLRNGEFELAR 115
Query: 195 MFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK 254
FD ++D+V + MI G + N
Sbjct: 116 KLFDEMPERDLVSWNVMI--------------KGYVRNR--------------------- 140
Query: 255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK---- 310
LG E ++ VC WN M+SGYA+NG ++A +F +
Sbjct: 141 -------NLGKARELFEIMPERDVCS-------WNTMLSGYAQNGCVDDARSVFDRMPEK 186
Query: 311 ----W---MDYYIGKSEY---------RNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
W + Y+ S+ R N ++ L+ + K + A FFD
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLF 379
+DVV + + GY G +E LF
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLF 273
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
++ WN IS Y + G EA+++F P+W + + +I Y + G
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRW------------SSVSYNGMISGYLRNGE 110
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGY 366
+LA FD ++D+V + M GY
Sbjct: 111 FELARKLFDEMPERDLVSWNVMIKGY 136
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 139/353 (39%), Gaps = 92/353 (26%)
Query: 158 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
P +I K + +++ V LI Y+ CG + FD T DKDVV +AMI G+
Sbjct: 122 PFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVR 181
Query: 218 HEWS--AFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
++ S A F G+ +NE + L + E + G+ +HGF ++ G + D
Sbjct: 182 NDSSLEAMTYFVEMKRSGVAANEMTVV-SVLKATRKAEDVRFGRSIHGFYLEAG-RVRCD 239
Query: 271 LLISLTAVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313
+ I + V Y NV W A+I+GY + E+ + +F + +
Sbjct: 240 VFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLK 299
Query: 314 Y------------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
Y+ K+ N V T LID YAKCG ++
Sbjct: 300 SDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEE 359
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLH---------------------------------- 369
A + F+R +K+V +AM G+ H
Sbjct: 360 AILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAH 419
Query: 370 -GLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
GL EEG LF ++ + +EP+ HYA +VDL R G A I MP+E
Sbjct: 420 GGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPME 472
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 44/213 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG----------- 49
M+ + VA N T VLKA + G +HG G + C +F G
Sbjct: 195 MKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCG 254
Query: 50 LFDRTIVFLDLYHLWSRTEWSAFGS--------------FDGLLSNE----ENEYGTALD 91
+D D + W+A + F+ +L ++ E + L
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLS 314
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVTL 136
+ L +G+ VH ++IK +E+ + + LI A C + NV
Sbjct: 315 ACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYT 374
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 169
AMI+G+A +GYA AV LF + ++ +E
Sbjct: 375 WTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNE 407
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 132/334 (39%), Gaps = 95/334 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N ++ GY K G +A LF +S NV+ + ++ Y K G +++A M F
Sbjct: 47 NTILDGYVKAGEMNKAFGLF---------ESMPERNVVSWSTMVSGYCKAGDMEMARMLF 97
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
DR K++V + ++ GY + G A D E +E+
Sbjct: 98 DRMPVKNLVSWTIIVSGYAVK-------------------GLAKDAIRSFEQMEEA---- 134
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
GL+ + +IS+ A C AE + K + I
Sbjct: 135 ------GLKPDDGTVISILASC---------------------AESGLLGLGKRVHTSIE 167
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
+ Y+ +V V+ L+DMYAKCG VD A F+ KD+V + M G +HG GE+
Sbjct: 168 RIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQ 227
Query: 378 LFHHIRK------------------------------------HGIEPRHQHYARVVDLL 401
LF +R+ +GI P +HY +VDLL
Sbjct: 228 LFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLL 287
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R G A++ + +MP+E + + LL A ++
Sbjct: 288 GRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRM 321
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPK--------W---MDYYIGKSEY--------- 321
+ +V WN+MI G K G EA KLF + W +D Y+ E
Sbjct: 9 ERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFES 68
Query: 322 --RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
NV+ + ++ Y K G +++A M FDR K++V + + GY + GL ++ F
Sbjct: 69 MPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSF 128
Query: 380 HHIRKHGIEPRHQHYARVVDLLARAG 405
+ + G++P ++ A +G
Sbjct: 129 EQMEEAGLKPDDGTVISILASCAESG 154
>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g17630
gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 731
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 161/401 (40%), Gaps = 116/401 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMF 196
N MI G+++ E AVK+F +WM + E++ + + T ++ +++CG D+ F
Sbjct: 228 NVMIKGFSQEYDCESAVKIF-EWMQ----REEFKPDEVTWTSVLSCHSQCGKFEDVLKYF 282
Query: 197 FDRTLDKDVVMRSAMIVGYGL-------------HEWSAFGSFDGLLSNEE------NEY 237
+ + V A+ V + + H + G F+ L + +
Sbjct: 283 HLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQ 342
Query: 238 GTALDC----------------SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
G D S F++ GK+ + L ELE + VC
Sbjct: 343 GKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEA--LSLFSELEE-----MNHVCNV 395
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY--------------------------- 314
+ NV W ++I G G +++++ F + M +
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDDSLEYF-RQMQFSKVLANSVTICCILSICAELPALNLGR 454
Query: 315 ----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
++ ++ N++V L++MYAKCG + + F+ DKD++ +++ GYG+HG
Sbjct: 455 EIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHG 514
Query: 371 LGEEGWVLFHHI------------------------------------RKHGIEPRHQHY 394
E+ +F + ++ G+EP+ +HY
Sbjct: 515 FAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHY 574
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A +VDLL R G+ A + + NMP+E ++ V ALL++ ++
Sbjct: 575 ACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRM 615
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 166/432 (38%), Gaps = 124/432 (28%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
E+G+ +H ++KLG L+ RY + ++IS YA+NG E+A K+F
Sbjct: 80 FEEGRQIHAQVLKLGCGLD-----------RY-----VHTSLISMYARNGGLEDARKVFD 123
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
S +R+ V+ T LI YA G A FD ++DVV +AMI GY
Sbjct: 124 A--------SSHRD-VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVEN 174
Query: 216 GLHEWSAFGSFDGLLSNEENEYGT---ALDCSCDLEFLEQGKIVH----------GFMIK 262
G +E + + + +N + GT + +E G+ VH GF
Sbjct: 175 GRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSS 234
Query: 263 LGLELESDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFP- 309
L + + LI L + C +V WN +I GY +EA+ LF
Sbjct: 235 LKI---VNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQE 291
Query: 310 -----------------------------KWMDYYIGKS--EYRNNVIVNTVLIDMYAKC 338
+W+ YI K N + T LIDMYAKC
Sbjct: 292 MLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKC 351
Query: 339 GSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE---------- 388
G ++ A F+ L + + +AM G+ +HG + LF +R + +E
Sbjct: 352 GDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLL 411
Query: 389 --------------------------PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR 422
P+ +HY ++DLL +G A + I MP+E
Sbjct: 412 SACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPD 471
Query: 423 LSVRRALLSAWK 434
+ +LL A K
Sbjct: 472 GVIWCSLLKACK 483
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 116/260 (44%), Gaps = 24/260 (9%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
PN ++ AK+ EE ++ + + G Y V+T LI MYA+ G ++
Sbjct: 62 PNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRY-----VHTSLISMYARNGGLE 116
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
A FD + +DVV +A+I GY SA FD + + + + +
Sbjct: 117 DARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMIT-----GY 171
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+E G+ + LEL +++ + +P+ +++S A++G E ++
Sbjct: 172 VENGR------YEEALELFKEMMRT-----NVRPDEGTLVSVVSACAQSGSIELGRQVH- 219
Query: 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369
W+D + +++ + LID+Y+KCG V+ A F+ KDVV + + GY
Sbjct: 220 SWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHT 279
Query: 370 GLGEEGWVLFHHIRKHGIEP 389
L +E +LF + + G P
Sbjct: 280 NLYKEALLLFQEMLRSGECP 299
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 145/355 (40%), Gaps = 89/355 (25%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDG 228
+++IV L+ M AK + A + F++ ++D V S MI G+ G +E F +F
Sbjct: 33 HDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYE-RCFQTFRE 91
Query: 229 LL---SNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY 281
L+ S +N + +C D L G+++H ++K GL L++ L+ + A C
Sbjct: 92 LIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGM 151
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLF--------------------- 308
+ ++ MI+GYA+ G E+ LF
Sbjct: 152 IDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNA 211
Query: 309 ---------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ + Y+ Y +V + T +IDMYAKCGS+D + FDR K+V+
Sbjct: 212 CAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISW 271
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------------------- 391
SAM YG HG G E LFH + GI P
Sbjct: 272 SAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSV 331
Query: 392 --------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQ 438
+HY +VDLL RAG + A + I NM +E + A L A +I Q
Sbjct: 332 SYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQ 386
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 68/262 (25%)
Query: 99 LEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLRNAMISG 143
L G+++H ++K GL L++ L+ + A C + ++ R MI+G
Sbjct: 117 LIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAG 176
Query: 144 YAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYRNN 173
YA+ G E+ LF + + Y+ Y +
Sbjct: 177 YAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLD 236
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSF----- 226
V + T +IDMYAKCGS+D + FDR K+V+ SAMI YG H A F
Sbjct: 237 VELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLN 296
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
G++ N CS H ++ GL+L S + +S +P+V
Sbjct: 297 SGIIPNRITFISLLYACS------------HAGLVDDGLQLFSLMSVSYGV----RPDVK 340
Query: 287 LWNAMISGYAKNGYAEEAVKLF 308
+ M+ + G ++A++L
Sbjct: 341 HYTCMVDLLGRAGRLDQALRLI 362
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 113/472 (23%), Positives = 169/472 (35%), Gaps = 127/472 (26%)
Query: 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY---------- 130
+ + T L LEQ VH +I+ GL + L+ +C
Sbjct: 23 DTTSSISTLLKACTTTSTLEQ---VHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSV 79
Query: 131 -----QPNVTLRNAMISGYAKNGYAEEAVKLFP--KWMDYYIGKSEYRN----------- 172
P+ L N I GY++N V LF K D K Y +
Sbjct: 80 FNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 139
Query: 173 -----------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
+V V T LID+Y KCG + A FD +++VV +AMI GY
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 199
Query: 216 GLHE-------------------WSAFGS--------------FDGLLSNEENEYGTALD 242
W+A S FD + + T +D
Sbjct: 200 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMID 259
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
+ + V + + S L+ + A +P+ + +++S ++ G E
Sbjct: 260 GYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLE 319
Query: 303 EAVKLFPKWMDYYIGKSE---YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
A KW+D Y+ KS +R +VI LIDM AKCGS+D A F+ +D++
Sbjct: 320 LA-----KWVDDYVRKSSIDVHRAHVIA--ALIDMNAKCGSMDRATKLFEEMPKRDLISY 372
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHG--------------------------------- 386
+M G +HG G + LF + G
Sbjct: 373 CSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKT 432
Query: 387 ---IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
I P HYA +VDLL RAG A++ + +MP+E ALL A K+
Sbjct: 433 DYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKL 484
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 55/300 (18%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
RN+V+V T +I MY+K G V A FD DK+ V + MI GY +
Sbjct: 106 RNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGY-------------MR 152
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
S + + D + + + +++GF+ K G E+ + +P+ + A
Sbjct: 153 SGQVDNAAKMFDKMPERDLISWTAMINGFVNK-GFHEEALAWFREMQISGVKPD---YVA 208
Query: 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+I+ A N F W+ Y+ +++NNV V+ LID+Y +CG V+ A FD+
Sbjct: 209 IIA--ALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDK 266
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-------------------------- 384
+ VV +++ VG+ +G E V F +++
Sbjct: 267 MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEG 326
Query: 385 ----------HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ I PR +HY +VDL +RAG A K + +MP++ V +LL+A +
Sbjct: 327 LRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACR 386
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 135/346 (39%), Gaps = 81/346 (23%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPS--LLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL 58
M++A V PN T +L C PS +G +HG LG ++ G +
Sbjct: 62 MRLAGVEPNHITFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVG-----TAII 116
Query: 59 DLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+Y R + A FD + + T +D ++ G++ + K+ ++
Sbjct: 117 GMYSKRGRVK-KARCVFDYMEDKNSVTWNTMID-----GYMRSGQVDNA--AKMFDKMPE 168
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK------------------- 159
LIS TA MI+G+ G+ EEA+ F +
Sbjct: 169 RDLISWTA-------------MINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNA 215
Query: 160 -----------WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 208
W+ Y+ +++NNV V+ LID+Y +CG V+ A FD+ + VV
Sbjct: 216 CTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSW 275
Query: 209 SAMIVGYGLHEWSAFGSFDGLLSNEENEYGT-------ALDCSCDLEFLEQGKIVHGFMI 261
+++IVG+ + +A S +E + AL + +E+G MI
Sbjct: 276 NSVIVGFAAN-GNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMI 334
Query: 262 KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307
SD IS P + + ++ Y++ G E+A+KL
Sbjct: 335 -------SDYRIS--------PRIEHYGCLVDLYSRAGRLEDALKL 365
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 101/419 (24%), Positives = 164/419 (39%), Gaps = 103/419 (24%)
Query: 50 LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 109
LF+ I Y RT + F + + + L S +L + GK VHG +
Sbjct: 138 LFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLI 197
Query: 110 IKLGLELE---SDLLISLTAVC-------RYQPNVTLR-----NAMISGYAKNGYAEEAV 154
+++GL+ + + LI L C + N+T+R NA+++GY K+G + A+
Sbjct: 198 LRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAAL 257
Query: 155 KLFPK--WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI 212
+F + W N++ T +I Y++ G A FD + +D +R
Sbjct: 258 AIFERMPW-----------RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRP--- 303
Query: 213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272
W S L L LE+G+ +H ++GL + +L
Sbjct: 304 ------NWVTIMS--------------VLPACAQLSTLERGRQIHELACRMGLNSNASVL 343
Query: 273 ISLTAV------------C-----RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
I+LTA+ C R + N+ WN MI+ YA G+ +AV F + +
Sbjct: 344 IALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAG 403
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
I + I T L+ + G VD+ +F+
Sbjct: 404 IQPDD-----ITFTGLLSGCSHSGLVDVGLKYFN-------------------------- 432
Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
H + I PR +HYA V DLL RAG A K + MP+ S+ +LL+A +
Sbjct: 433 ----HMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACR 487
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 152/377 (40%), Gaps = 92/377 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM----------DYY---------------- 164
P + L N MI Y+K ++E + LF + + D Y
Sbjct: 136 SPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLI 195
Query: 165 --------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
+ KS + +N+ V +I+M + ++ A F++ ++DV ++++ GY
Sbjct: 196 YGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYA 255
Query: 217 LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
H G D E + D+ + ++ GF+ G E+ L
Sbjct: 256 KH-----GEMD-----RACELFNMMPVRNDVSW---AVMISGFL-GCGRYPEA-LTFFCN 300
Query: 277 AVC--RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334
+C R PN + ++S A G ++ W+ YI K R + ++T LIDM
Sbjct: 301 MLCDDRVNPNEAVLVCVLSACAHLGALDQG-----NWIHLYIDKIGIRQSSNISTALIDM 355
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH--------- 385
YAKCG +D A F+ +DV+ ++M G HGLG++ +F+ +
Sbjct: 356 YAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITI 415
Query: 386 ---------------------------GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
GI P+ +HY +DLL RAGY A + + MP
Sbjct: 416 LGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMP 475
Query: 419 IELRLSVRRALLSAWKI 435
+E + + RALLSA +I
Sbjct: 476 MEPDIVIWRALLSASRI 492
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 89/372 (23%), Positives = 142/372 (38%), Gaps = 67/372 (18%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFL-----------VCYLFDGLFDRT 54
V P+ T V+ +C SL+ G VHG + GF +C +F + D
Sbjct: 174 VVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDAR 233
Query: 55 IVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDL-------EFLEQGKIVHG 107
VF + R +S G + E +D +C+L + ++ G
Sbjct: 234 KVF---NQMSERDVFSWTSLLGGYAKHGE------MDRACELFNMMPVRNDVSWAVMISG 284
Query: 108 FMIKLGLELESDLLISLTAVC--RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
F+ G E+ L +C R PN + ++S A G ++ W+ YI
Sbjct: 285 FL-GCGRYPEA-LTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQG-----NWIHLYI 337
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAF 223
K R + ++T LIDMYAKCG +D A F+ +DV+ ++MI G H A
Sbjct: 338 DKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDAL 397
Query: 224 GSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F + ++ NE G CS H +++ G S +L ++ ++
Sbjct: 398 RVFYQMLDENVMPNEITILGVLNGCS------------HSGLVEEG----SSILANMESL 441
Query: 279 CRYQPNVTLWNAMISGYAKNGYAE---EAVKLFPKWMDYYI-----GKSEYRNNVIVNTV 330
P + + I + GY E E VK P D I S +NV +
Sbjct: 442 WGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQ 501
Query: 331 LIDMYAKCGSVD 342
+I + S D
Sbjct: 502 IISHIGQLKSSD 513
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 145/351 (41%), Gaps = 93/351 (26%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDV-----VMRSAMIVGYGLHEWSAFGSFDGL-LS 231
T LI+MY++ S+D A FD+T + + + R+ + GYG + + + +
Sbjct: 117 TKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVP 176
Query: 232 NEENEYGTALDCSCDLE----FLEQGKIVHGFMIKLGLELESDLLISL------------ 275
++ Y L E L G+ +HG +++ G E ++ +L
Sbjct: 177 SDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLN 236
Query: 276 -TAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWM-------------------- 312
+ V P NV W+AMI+ Y+KNG EA++LF K M
Sbjct: 237 ASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQAC 296
Query: 313 ------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
YI + + + V + L+ +YA+CG+++L F+R +DVV +
Sbjct: 297 AALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWN 356
Query: 361 AMTVGYGLHGLG-----------------------------------EEGWVLFHH-IRK 384
++ YG+HG G EEG VLF +R
Sbjct: 357 SLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRG 416
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H I P +HYA +VDLL RA + A K I +M IE V +LL + +I
Sbjct: 417 HKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRI 467
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 42/260 (16%)
Query: 16 VLKACVALPS----LLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSA 71
VLKACVA + LL G +HG I GF +G LD+Y + +A
Sbjct: 185 VLKACVASEAFVSLLLNGREIHGHILRHGF------EGHVHIMTTLLDMYARFG-CVLNA 237
Query: 72 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 131
FD + + + C + + GK + + + LE+ L+
Sbjct: 238 SRVFDQMPVKNVVSWSAMIAC-----YSKNGKPLEALELFRKMMLENQDLL--------- 283
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
PN +++ A E+ K M YI + + + V + L+ +YA+CG+++
Sbjct: 284 PNSVTMVSVLQACAALAALEQG-----KLMHGYILRRGLDSILPVVSALVTVYARCGNLE 338
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS---------FDGLLSNEENEYGTALD 242
L F+R +DVV +++I YG+H FG D LS + + L
Sbjct: 339 LGHRVFERMEKRDVVSWNSLISSYGIH---GFGRKAIQIFKEMIDQGLSPSPISFVSVLG 395
Query: 243 CSCDLEFLEQGKIVHGFMIK 262
+E+GK++ M++
Sbjct: 396 ACSHAGLVEEGKVLFESMVR 415
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 125/336 (37%), Gaps = 116/336 (34%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226
KS + ++V+ LI +YAKCG + A F ++D+V ++MI Y
Sbjct: 399 KSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYS---------- 448
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286
+ G I+ G++ N
Sbjct: 449 ------------------------QIGNIIKAREFFDGMDTR---------------NAI 469
Query: 287 LWNAMISGYAKNGYAEEAVKLF----------PKWMDYY--------IGKSEYRNNVIVN 328
WNAM+ Y ++G E+ +K++ P W+ Y IG ++ + +I +
Sbjct: 470 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH 529
Query: 329 TV-------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
TV I MY+KCG + A FD KDVV +AM GY HG+G++
Sbjct: 530 TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQA 589
Query: 376 WVLFHHI------------------------------------RKHGIEPRHQHYARVVD 399
F + R HGI P +H++ +VD
Sbjct: 590 AKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVD 649
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
LL RAG+ A I MP++ V ALLSA KI
Sbjct: 650 LLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKI 685
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 98/277 (35%), Gaps = 82/277 (29%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG------------------- 216
V T L+DM+ +CG VD A F + + R++M+ GY
Sbjct: 175 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERD 234
Query: 217 LHEWS---AFGSFDGLLSN---------------EENEYGTALDCSCDLEFLEQGKIVHG 258
+ W+ A S G + + Y ++L L L GK +H
Sbjct: 235 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 294
Query: 259 FMIKLGLELE---SDLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEE 303
+I+ +++ + LI L A C N W +I G + +
Sbjct: 295 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 354
Query: 304 AVKLFPKW----------------------MDYYIG--------KSEYRNNVIVNTVLID 333
+V+LF + MD +G KS + ++V+ LI
Sbjct: 355 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLIS 414
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+YAKCG + A F ++D+V ++M Y G
Sbjct: 415 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIG 451
>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 736
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 127/273 (46%), Gaps = 53/273 (19%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGL 229
NNV V+T L++MY K G+V A FD L ++ V +AM+ GY + S AF F +
Sbjct: 156 NNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLM 215
Query: 230 LSN---EENEY-GTALDCSCDLEF-LEQGKIVHGFMIKLGL----ELESDLLI------S 274
L E+NE+ TA+ + + L G +HG ++K GL +E+ L+
Sbjct: 216 LQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAEC 275
Query: 275 LTAVCRY-----QPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY------ 314
+ A R + N W+AMI+GYA+NG A A ++F P +
Sbjct: 276 MDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNA 335
Query: 315 -------YIGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVM 358
+GK + V V + L+DMYAKCG + A F + D DVV+
Sbjct: 336 CSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVL 395
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391
+AM G+ +G EE +L+ + K GI P +
Sbjct: 396 WTAMITGHVQNGEHEEALMLYSRMDKQGIIPSY 428
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 193/456 (42%), Gaps = 94/456 (20%)
Query: 46 LFDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSN---EENEY-GTALDCSCDLE 97
+FDG+ R V + Y +E AF F +L E+NE+ TA+ + +
Sbjct: 180 VFDGMLHRNAVSWAAMVSGYATGKCSE-EAFELFRLMLQKCPLEKNEFVTTAVLSAVSVP 238
Query: 98 F-LEQGKIVHGFMIKLGL----ELESDLLI------SLTAVCRYQPNVTLRN-----AMI 141
L G +HG ++K GL +E+ L+ + A R + RN AMI
Sbjct: 239 LGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMI 298
Query: 142 SGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKSE--------YR 171
+GYA+NG A A ++F P + +GK +
Sbjct: 299 TGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFE 358
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGY---GLHEWS--AFGS 225
V V + L+DMYAKCG + A F + D DVV+ +AMI G+ G HE + +
Sbjct: 359 TQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSR 418
Query: 226 FD--GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
D G++ + C+C L L+ GK +H ++K CR+
Sbjct: 419 MDKQGIIPSYLTVTSVLRACAC-LAALDLGKQLHAQILK----------------CRFSL 461
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG-SVD 342
++ A+ + Y+K G E+++ +F + D +VI +I ++++ G D
Sbjct: 462 GGSVGTALSTMYSKCGNLEDSMVVFRRMPD---------RDVISWNSIISVFSQHGRGSD 512
Query: 343 LAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARVV 398
MF + L+ D + + GL + GW F + K + + P HYA +V
Sbjct: 513 ALDMFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMV 572
Query: 399 DLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
D+L+RAG A FI ++ I+ + R +L A +
Sbjct: 573 DILSRAGQLKEAKDFIDSITIDHGTCLWRIVLGACR 608
>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
Length = 592
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/417 (25%), Positives = 168/417 (40%), Gaps = 120/417 (28%)
Query: 99 LEQGKIVHGFMIKLGL--------ELESDLLISLTAVCRYQPNVTLR------------- 137
L +G+ +HG ++K G L L++ A C P+++LR
Sbjct: 25 LPKGQQLHGHLLKAGHVPATASSHTLLGHHLLTFYARCAL-PDLSLRAFLDLPAPPSPAA 83
Query: 138 -NAMISGYAKNGYAEEAVKLF----------------------------------PKWMD 162
+++IS +A+NG A A F P +
Sbjct: 84 WSSLISSFAQNGLAAAAFDTFRRMLAAGVPATDRNIPSAAKAVAAAETLSRPPFAPHALH 143
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE 219
K+ + +V V + ++DMYAKCG + A FD +++VV SA+I GY G+H
Sbjct: 144 GLAAKTPFAGDVFVGSAILDMYAKCGHLADARRLFDEMPERNVVSWSALICGYADAGMHP 203
Query: 220 WSAFGSFDGLLSNEE----NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
+A G F L+ EE N++ + + E G VH K L+ +
Sbjct: 204 -AAMGIFR--LALEEAVPVNDFTVSSIIRVCAAATLFELGAQVHARATKTALDASPFVGS 260
Query: 274 SLTAV--------CRY-------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 318
SL +V C Y + N+ +WNA++ A++G+ A F ++M+ +
Sbjct: 261 SLVSVYSKCGLVECAYRVFNEAPEKNLGIWNAVLIASAQHGHTAAA---FERFME--MQN 315
Query: 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVL 378
+ +R N I L+ + G VD EG
Sbjct: 316 AGFRPNHITFLCLVTACSHAGLVD-------------------------------EGKRY 344
Query: 379 FHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
F ++ +GIEP+ +HYA +VDLL R G A I +MP+E SV ALL + +I
Sbjct: 345 FSLMKDYGIEPQAEHYASMVDLLGRVGRIKEALDLIESMPMEPPESVWGALLMSCRI 401
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 124/471 (26%), Positives = 194/471 (41%), Gaps = 114/471 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG----------FLVCYLFDG- 49
MQ + PN T +L AC ++ G V+ Q+ G + Y G
Sbjct: 213 MQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272
Query: 50 LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 109
L D F + ++++ W+ DG + N E++ L E+ M
Sbjct: 273 LSDALEAFQAMPARYTKS-WNTL--IDGFVQNHEHKEA--------LRIFEE-------M 314
Query: 110 IKLGLELESDLLISLTAVCRYQPNVTLRNAM-ISGYAK-NGYAEEAVKLFPKWMDYYIGK 167
+ G+ + L+S+ + C LR M + Y K NG
Sbjct: 315 LLHGVTPDGITLVSVLSACAQLGE--LRKGMHVHSYIKDNGIC----------------- 355
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLHEWS-AFGS 225
+N++ N+ LI+MYAKCG + A F KDVV + M+ GY H+++ AF
Sbjct: 356 ---CDNILTNS-LINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNL 411
Query: 226 FDGLLSNEENEYGTAL-----DCSCDLEFLEQGKIVHGFMIKLG----LELESDLLISLT 276
F+ + E + AL CS L L++G+ +H ++ ++ L LES L+ +
Sbjct: 412 FEEMKIAEVVAHEMALVSLLSACS-QLGALDKGREIHSYIEEMNVAKDLCLES-ALVDMY 469
Query: 277 AVC-----------RYQPNVTL-WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324
A C + Q TL WNAMI G A NGY +EAV+LF + ++ K +
Sbjct: 470 AKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPD---G 526
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ + VL C V G+ +EG F+ +
Sbjct: 527 ITLKAVL----GACAHV----------------------------GMVDEGLRYFYLMSS 554
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G+ P +HY +VDLL RAG + AF FI MPIE + +LL+A ++
Sbjct: 555 LGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRV 605
>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 117/469 (24%), Positives = 176/469 (37%), Gaps = 131/469 (27%)
Query: 93 SC-DLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVTL 136
SC LE + QGK +HGF IK GL L+ + L S+ A C +V
Sbjct: 552 SCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAAEYLFEEMMDKSVVS 611
Query: 137 RNAMISGYAKNGYAEEAVKLF------------------------PKWMDYYIGKSEYRN 172
N MI Y +NG+ +EA+ +F P+ + Y K +
Sbjct: 612 WNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSANANPESIHCYTIKVGLAD 671
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG----SFDG 228
+ V T LI MYA+ GS D A + + K++V +A+I Y E G SF
Sbjct: 672 DASVVTSLICMYARYGSTDHAELLYWSLPQKNLVSLTAIITSYA--EAGNLGLVMESFSQ 729
Query: 229 L----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCR- 280
+ + + + L D + G + HG+ IK GL+ L ++ LIS+ +
Sbjct: 730 MHQLNMKPDSVAMLSILHGIADPVHICIGHVFHGYAIKSGLDTFNLVTNGLISMYSKFNN 789
Query: 281 -----------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKW------------------ 311
++ + WN++ISG + G A A++LF +
Sbjct: 790 VEALFGLFSGMHEKPLISWNSVISGCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSG 849
Query: 312 ------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+ YI +++ V T LI MY KCGS+ A F +
Sbjct: 850 CSQLGYLQFGERLHSYILRNKLEMEDFVGTALIHMYTKCGSIVHAERVFKSIGKPCLATW 909
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH---------------------------- 391
+AM GY +G + + +++ G+EP
Sbjct: 910 NAMISGYSCYGFEHKALTCYSEMQEQGVEPDKITFLGVLAACTHGGLIHEGRRYFQIMTK 969
Query: 392 --------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
QH A +V LLAR G A FI NM E +V A LSA
Sbjct: 970 VYDMVPTLQHCACMVGLLARVGLFEEALLFIKNMEKEPDSAVWGAFLSA 1018
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 104/243 (42%), Gaps = 47/243 (19%)
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFD---- 227
V V+T L+D+Y K G V A FD +DVV +A+I GY +++SA F
Sbjct: 477 VYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRNGYDFSALELFVQMLK 536
Query: 228 -GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC---- 279
G + G C LE + QGK +HGF IK GL L+ + L S+ A C
Sbjct: 537 LGFCPRQTTLVGLLPSCG-QLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLE 595
Query: 280 --------RYQPNVTLWNAMISGYAKNGYAEEAVKLF----------------------- 308
+V WN MI Y +NG+ +EA+ +F
Sbjct: 596 AAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSANA 655
Query: 309 -PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367
P+ + Y K ++ V T LI MYA+ GS D A + + K++V +A+ Y
Sbjct: 656 NPESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLPQKNLVSLTAIITSYA 715
Query: 368 LHG 370
G
Sbjct: 716 EAG 718
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
V V+T L+D+Y K G V A FD +DVV +A+ GY +G LF + K
Sbjct: 477 VYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRNGYDFSALELFVQMLK 536
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFK------FIMNMPIELRLSVRRALLSAW 433
G PR +V LL G F+ F + + L V+ AL S +
Sbjct: 537 LGFCPRQ---TTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMY 588
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 159/421 (37%), Gaps = 124/421 (29%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLF--PKWMDY-------------------------- 163
PN+ L N+M GYA++ E V LF K MD
Sbjct: 162 PNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQV 221
Query: 164 --YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-- 219
++ K +R N V T LIDMY+ G+V A F +++VV ++MI GY L
Sbjct: 222 HCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADL 281
Query: 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-DLLISLTAV 278
SA FD L+ E + + S ++E G +V KL E+ + D++ T +
Sbjct: 282 VSARRLFD--LAPERDVVLWNIMVS---GYIEGGDMVEAR--KLFXEMPNRDVMFWNTVL 334
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------ 309
Y + N+ WNA+I GYA NG E + F
Sbjct: 335 KGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPND 394
Query: 310 -------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
KW+ Y S + NV V L+DMYAKCG ++ A F
Sbjct: 395 ATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRG 454
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------------------ 386
KD++ + + G +H G + LF ++ G
Sbjct: 455 MDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG 514
Query: 387 ------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I P+ +HY +VD+LARAG A F+ MP+E + LL A +
Sbjct: 515 FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACR 574
Query: 435 I 435
I
Sbjct: 575 I 575
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 79/203 (38%), Gaps = 31/203 (15%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FG 224
++ N + L+ + A + A FD+ D ++ + ++M GY E F
Sbjct: 129 FQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFF 188
Query: 225 SFDGL-LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
G+ + + L + L +G+ VH F+IK C ++
Sbjct: 189 QMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK----------------CGFRG 232
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
N + +I Y+ G +A K+F + + NV+ T +I+ Y +
Sbjct: 233 NPFVGTTLIDMYSAGGTVGDAYKIFCEM---------FERNVVAWTSMINGYILSADLVS 283
Query: 344 APMFFDRTLDKDVVMRSAMTVGY 366
A FD ++DVV+ + M GY
Sbjct: 284 ARRLFDLAPERDVVLWNIMVSGY 306
>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 874
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 106/440 (24%), Positives = 171/440 (38%), Gaps = 125/440 (28%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR------------Y 130
+ L LE L GK +H F++ +E+ L+ + C+ +
Sbjct: 291 ASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMF 350
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--------------------- 169
+ + + NAMI+GY +N + EA++LF + M + +G S
Sbjct: 351 RRTIAVWNAMIAGYVRNEFDYEAIELFVE-MVFELGLSPNSVTLSSVLPACVRCESFLDK 409
Query: 170 -----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ + V L+DMY++ G +++A F KD+V + MI GY +
Sbjct: 410 EGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVV- 468
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
G D L+ L +++G+ H I + E + L
Sbjct: 469 ----CGRHDDALN--------------LLHDMQRGQAEH--RINTFDDYEDNKNFPL--- 505
Query: 279 CRYQPN-VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337
+PN VTL + G A A K + Y K +V V + L+DMYAK
Sbjct: 506 ---KPNSVTLMTVL------PGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAK 556
Query: 338 CGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI--------------- 382
CG ++L+ F++ ++V+ + + + YG+HG GEE LF +
Sbjct: 557 CGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEV 616
Query: 383 --------------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
KHGIEP HYA +VDLL R+G A+ I
Sbjct: 617 TYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKT 676
Query: 417 MPIEL-RLSVRRALLSAWKI 435
MP + ++ +LL A KI
Sbjct: 677 MPSNMKKVDAWSSLLGACKI 696
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 118/313 (37%), Gaps = 65/313 (20%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAV-KLFPKWMDYYIGKSEYRN--------NVIVNTVL 180
+Q T N + +G + +A AV K D +GK + + V L
Sbjct: 67 HQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSL 126
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-VGYGLHEWS-AFGSFDGLLSNEENEYG 238
++MY KCG +D A FD ++D V ++MI EW A F +L EN
Sbjct: 127 VNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLL--ENVGP 184
Query: 239 TALD-------CSCDLEFLEQGKIVHGFMIKLG--LELESDLLISLTA-VCRYQPNVTL- 287
T+ CS + L GK VH F+++ G ++ L+++ A + R TL
Sbjct: 185 TSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAKTLF 244
Query: 288 ----------WNAMISGYAKNGYAEEAV-------------------KLFP--------- 309
WN +IS ++N EEA+ + P
Sbjct: 245 DVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLG 304
Query: 310 ---KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ + + ++ N V L+DMY C + + FD + + + +AM GY
Sbjct: 305 CGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGY 364
Query: 367 GLHGLGEEGWVLF 379
+ E LF
Sbjct: 365 VRNEFDYEAIELF 377
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 182/455 (40%), Gaps = 80/455 (17%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGL 50
MQ P+ T P VLK C A+ L+ G VH +I GF L Y+ G
Sbjct: 96 MQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGD 155
Query: 51 FDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMI 110
+ + + W+ W++ G ++N++ + L + E +E +I +
Sbjct: 156 LNSGLKVFEFIPKWNVVAWTSL--IAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTAL 213
Query: 111 KLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 170
I + RY+ LR + + N
Sbjct: 214 AAAARCRD---IHTGKLVRYR----LRQLGLDPFHTNS---------------------- 244
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG------ 224
R NVI+ T ++DMYAKCG + A FD+ +++V+ ++MI + + A
Sbjct: 245 RFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVD 304
Query: 225 -SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
G + N+ C+ L F G+ +H ++K +
Sbjct: 305 MELAGFVPNKATFLSVIRACT-HLRFRSTGQSLHARVLK----------------ANFHE 347
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
V + A++ YAK+G A+ A+K+F K + +V+ T +I A G
Sbjct: 348 FVAIGTALMDMYAKSGDADTALKIFSKL---------RKKDVMAWTTMISGLAIQGKGKE 398
Query: 344 APMFFDRTLDK-----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK-HGIEPRHQHYARV 397
A F R ++ D + A+ GL EEG F + + +GIEP +HY +
Sbjct: 399 ALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCM 458
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+DLL+RAG+S A + ++ MP + ++ ++L+
Sbjct: 459 IDLLSRAGHSEEAEELLVKMPTQPNATILSSILNG 493
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 121/296 (40%), Gaps = 68/296 (22%)
Query: 167 KSEYRNNVIVNTVLIDMYA--KCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
K+ N+I + LID A + G ++ A FD+T V + ++MI GY +
Sbjct: 30 KTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGY----CNGGD 85
Query: 225 SFDGLLSNEENE----------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDL 271
F L EE + + L ++ L G+ VH ++K G EL+ S
Sbjct: 86 KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSC 145
Query: 272 LISLTAVC----------RYQP--NVTLWNAMISGYAKNGYAEEAVKLFP---------- 309
L+++ C + P NV W ++I+G+ N +EA++LF
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205
Query: 310 ------------KWMDYYIGK---------------SEYRNNVIVNTVLIDMYAKCGSVD 342
+ D + GK + R NVI+ T ++DMYAKCG +
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGKLV 265
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
A FD+ +++V+ ++M + +G G E LF + G P + V+
Sbjct: 266 TARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSVI 321
>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
Length = 768
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 104/418 (24%), Positives = 155/418 (37%), Gaps = 138/418 (33%)
Query: 96 LEFLEQGKIVHGFMIKLGLE-------------LESDLLISLTAVCR--YQPNVTLRNAM 140
L L G+ VHG ++K GLE E + + VC+ P + N++
Sbjct: 285 LGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSL 344
Query: 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
I G G E+A +F G +E N + ++I YA G +D + F++
Sbjct: 345 IEGLISMGRIEDAELVFN-------GMTEM--NPVSYNLMIKGYAVGGQMDDSKRLFEKM 395
Query: 201 LDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
+ + + MI Y S G D LE E+ K
Sbjct: 396 PCRTIFSSNTMISVY-----SRNGEIDK-----------------ALELFEETK------ 427
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------------ 308
+ + WN+MISGY +G EEA+KL+
Sbjct: 428 --------------------NEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTR 467
Query: 309 ------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+ + ++ K+ + +NV V T LIDMY+KCGS+ A F
Sbjct: 468 STFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVS 527
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEE-----------------------------------G 375
+V +A+ G+ HGLG E G
Sbjct: 528 IFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEG 587
Query: 376 WVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+FH + R + + P +HYA VVDLL R+G+ A +FI MP+E V ALLSA
Sbjct: 588 MKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSA 645
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 158/414 (38%), Gaps = 100/414 (24%)
Query: 46 LFDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSN---EENEYGTALDCSCDLEF 98
LFD + RT+V + Y R + F + S+ E+ + + L L
Sbjct: 94 LFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRC 153
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
L GK++H ++K G E S L+ +A++ YA EA ++F
Sbjct: 154 LRDGKLIHCLVLKSGSE--SFELVG--------------SALLYFYASCFEIGEARRVF- 196
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
D + R N ++ ++++ Y C +D A F + +DVV + +I G+
Sbjct: 197 ---DVLV-----RRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKN 248
Query: 216 GLHEWSAFGSFDGLLSNEE---NEYGTALDC---SCD-LEFLEQGKIVHGFMIKLGLE-- 266
G A F ++ + E NE+ DC +C L L G+ VHG ++K GLE
Sbjct: 249 GDGCGKALEMFRLMMRSGETTPNEF--TFDCVVRACGRLGILSVGRTVHGLLMKCGLEYD 306
Query: 267 -----------LESDLLISLTAVCRYQPNVTL---------------------------- 287
E + + VC+ N L
Sbjct: 307 PSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE 366
Query: 288 -----WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
+N MI GYA G +++ +LF K I S +I +Y++ G +D
Sbjct: 367 MNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSS---------NTMISVYSRNGEID 417
Query: 343 LAPMFFDRTL-DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA 395
A F+ T +KD V ++M GY G EE L+ + + I+ ++
Sbjct: 418 KALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFS 471
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 30/202 (14%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K Y + +I + I YAK +D+A FD+ + VV + MI Y H
Sbjct: 57 KEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKH 116
Query: 219 E------WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG---LELES 269
+ + + E+ + + L L L GK++H ++K G EL
Sbjct: 117 GRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVG 176
Query: 270 DLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
L+ A C + N LW+ M+ GY ++A+ +F K
Sbjct: 177 SALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMP----- 231
Query: 318 KSEYRNNVIVNTVLIDMYAKCG 339
R +V+ T LI ++K G
Sbjct: 232 ----RRDVVAWTTLISGFSKNG 249
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 109/269 (40%), Gaps = 88/269 (32%)
Query: 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL-----------------WNAMISGY 295
G ++HGF ++LGL +++++S + Y TL WN M++GY
Sbjct: 122 GSVLHGFAVRLGLL--ANVVVSGALLDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGY 179
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSE---------------------------------YR 322
A+ G +EE ++LF K G +
Sbjct: 180 ARAGRSEETLELFRKAQIESAGMARDLRAVPSVLNVCADEGQLMKGREIHGRMARCLASS 239
Query: 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE-------- 374
++ +V LIDMY KCG VD A F +K+VV S++ YG+HG+G+E
Sbjct: 240 SDTVVGNALIDMYGKCGQVDGAQAVFASMEEKNVVSWSSLISCYGVHGMGKEALRVYEEM 299
Query: 375 ---------------------------GWVLFHHIRK-HGIEPRHQHYARVVDLLARAGY 406
G +F +RK H +EP HYA +VDLL RAG
Sbjct: 300 VSVGVKPNCVTFVSILSSCSHSGLVSDGRRIFESMRKVHAVEPTADHYACMVDLLGRAGA 359
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A + MP+E S+ ALLSA I
Sbjct: 360 IEEAVGLVNEMPMEPGASLWGALLSACAI 388
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 87/386 (22%), Positives = 136/386 (35%), Gaps = 109/386 (28%)
Query: 12 TPP------LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
TPP +L+ C A +L G ++H Q L G T + DL L+S
Sbjct: 2 TPPSSGRLSALLRRCAASGALSPGAQLHAQA---------LVGGRLPDTTLDTDLVLLYS 52
Query: 66 RTEW--SAFGSFDGLLSNEENEYGTALDCS---CDLEFLEQ------------------- 101
R A FDG+ S + Y L S ++ + +
Sbjct: 53 RCGALHRAREVFDGMPSPSMHAYNVLLAASPPDAAVKLVSRLVASGLRPDRYSVPAVLRA 112
Query: 102 ---------GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR--------------- 137
G ++HGF ++LGL +++++S + Y TL
Sbjct: 113 CAESRDALLGSVLHGFAVRLGLL--ANVVVSGALLDMYAKTGTLGDAGRVFDEMPERDAV 170
Query: 138 --NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-------------------------- 169
N M++GYA+ G +EE ++LF K G +
Sbjct: 171 AWNCMVTGYARAGRSEETLELFRKAQIESAGMARDLRAVPSVLNVCADEGQLMKGREIHG 230
Query: 170 -------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
++ +V LIDMY KCG VD A F +K+VV S++I YG+H
Sbjct: 231 RMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVFASMEEKNVVSWSSLISCYGVH---G 287
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
G + E G +C + L H ++ G + S+ V +
Sbjct: 288 MGKEALRVYEEMVSVGVKPNCVTFVSILSS--CSHSGLVSDGRR----IFESMRKVHAVE 341
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLF 308
P + M+ + G EEAV L
Sbjct: 342 PTADHYACMVDLLGRAGAIEEAVGLV 367
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 124/471 (26%), Positives = 194/471 (41%), Gaps = 114/471 (24%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG----------FLVCYLFDG- 49
MQ + PN T +L AC ++ G V+ Q+ G + Y G
Sbjct: 213 MQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272
Query: 50 LFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 109
L D F + ++++ W+ DG + N E++ L E+ M
Sbjct: 273 LSDALEAFQAMPARYTKS-WNTL--IDGFVQNHEHKEA--------LRIFEE-------M 314
Query: 110 IKLGLELESDLLISLTAVCRYQPNVTLRNAM-ISGYAK-NGYAEEAVKLFPKWMDYYIGK 167
+ G+ + L+S+ + C LR M + Y K NG
Sbjct: 315 LLHGVTPDGITLVSVLSACAQLGE--LRKGMHVHSYIKDNGIC----------------- 355
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-GLHEWS-AFGS 225
+N++ N+ LI+MYAKCG + A F KDVV + M+ GY H+++ AF
Sbjct: 356 ---CDNILTNS-LINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNL 411
Query: 226 FDGLLSNEENEYGTAL-----DCSCDLEFLEQGKIVHGFMIKLG----LELESDLLISLT 276
F+ + E + AL CS L L++G+ +H ++ ++ L LES L+ +
Sbjct: 412 FEEMKIAEVVAHEMALVSLLSACS-QLGALDKGREIHSYIEEMNVAKDLCLES-ALVDMY 469
Query: 277 AVC-----------RYQPNVTL-WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324
A C + Q TL WNAMI G A NGY +EAV+LF + ++ K +
Sbjct: 470 AKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPD---G 526
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384
+ + VL C V G+ +EG F+ +
Sbjct: 527 ITLKAVL----GACAHV----------------------------GMVDEGLRYFYLMSS 554
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
G+ P +HY +VDLL RAG + AF FI MPIE + +LL+A ++
Sbjct: 555 LGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRV 605
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 116/456 (25%), Positives = 184/456 (40%), Gaps = 96/456 (21%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRT 67
P+ T +L+ C+ L +L G +VH + GF+ + LD+Y + +
Sbjct: 87 PSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRI------LDMY-IKCNS 139
Query: 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127
+A FD + + CS ++ ++ G+ L+ L +T
Sbjct: 140 LVNAKRLFDEMAERDL--------CSWNI-------MISGYAKAGRLQEARKLFDQMTE- 183
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY-----------------------Y 164
+ N + AM SGY ++ EEA++LF + +
Sbjct: 184 ---RDNFSW-TAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLH 239
Query: 165 IGKSEYRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY- 215
+GK + + + +V + L DMY KCGS+ A FD+T+D+DVV +AMI Y
Sbjct: 240 LGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYF 299
Query: 216 --GLHEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269
G E F F LL + E + L+ D E GK VHG+M ++G
Sbjct: 300 KEGRRE-EGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIG----- 353
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
+ P+ + ++ Y K G + A ++F R +++ T
Sbjct: 354 -----------FDPSSFAASTLVHMYTKCGNIKNARRVF---------NGMPRPDLVSWT 393
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY----GLHGLGEEGWVLFHHIR-K 384
LI YA+ G D A FF+ L VG GL ++G F I+ K
Sbjct: 394 SLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEK 453
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
HG+ HYA ++DLL+R+G A I MPIE
Sbjct: 454 HGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIE 489
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 83/280 (29%)
Query: 239 TALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQP----------- 283
TA+ +C DL L G VH I LG + +L +L + C P
Sbjct: 109 TAVAKACADLSALRTGMTVHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRD 168
Query: 284 -NVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKSE 320
NV WNAMISGY +NG AE+ ++++ P M + +G+
Sbjct: 169 KNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREV 228
Query: 321 YRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
R +V + + L++MYA+CG VD A +FD +++VV ++M GYG+HG G
Sbjct: 229 ERRIVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHG 288
Query: 373 EEGWVLFHHI------------------------------------RKHGIEPRHQHYAR 396
E L+H + R +G+ PR +HY
Sbjct: 289 HEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCS 348
Query: 397 VVDLLARAGYSNHAFKFIMN-MPIELRLSVRRALLSAWKI 435
+VD+ RAG A +FI + MP + V A+L A K+
Sbjct: 349 MVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGACKM 388
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 46/177 (25%)
Query: 88 TALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQP----------- 132
TA+ +C DL L G VH I LG + +L +L + C P
Sbjct: 109 TAVAKACADLSALRTGMTVHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRD 168
Query: 133 -NVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDYY-------------IGKSE 169
NV NAMISGY +NG AE+ ++++ P M + +G+
Sbjct: 169 KNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREV 228
Query: 170 YRN--------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
R +V + + L++MYA+CG VD A +FD +++VV ++MI GYG+H
Sbjct: 229 ERRIVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMH 285
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 129/338 (38%), Gaps = 114/338 (33%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAF 223
+I K Y +++ LI+ YA G+ A + FDR + D V +++I GY
Sbjct: 135 HITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGY-------- 186
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283
+K G E D+ ++L +
Sbjct: 187 -------------------------------------VKAG---EMDMALTLFRKMPEKN 206
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMD 313
N W MISGY + G +EA++LF KW+
Sbjct: 207 NAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIH 266
Query: 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG- 372
Y K+ R + ++ VLIDMYAKCG ++ A F K V + +A+ GY HGLG
Sbjct: 267 SYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGR 326
Query: 373 ----------------------------------EEGWVLFHHI-RKHGIEPRHQHYARV 397
EEG +F+ I R + ++P +HY +
Sbjct: 327 EAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCM 386
Query: 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
VDLL RAG N A +FI MP++ + +LL A +I
Sbjct: 387 VDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQI 424
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 95/244 (38%), Gaps = 59/244 (24%)
Query: 7 AP-NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF-LVCYLFDGLFDRTIVFLDLYHLW 64
AP N T P +LKAC L + ++H I G+ Y + L + V + H
Sbjct: 106 APHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKH-- 163
Query: 65 SRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124
A FD + + + + ++ G+ +K G E D+ ++L
Sbjct: 164 ------AHLLFDRIQEPDAVSWNS---------------VIKGY-VKAG---EMDMALTL 198
Query: 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP-------------------------- 158
+ N MISGY + G +EA++LF
Sbjct: 199 FRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGA 258
Query: 159 ----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG 214
KW+ Y K+ R + ++ VLIDMYAKCG ++ A F K V + +A+I G
Sbjct: 259 LEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISG 318
Query: 215 YGLH 218
Y H
Sbjct: 319 YAYH 322
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 131/332 (39%), Gaps = 86/332 (25%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ +++ V+ +I + CG +D A FD++ +D+V ++MI GY + SA FD +
Sbjct: 182 FDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLESARKLFDSM 241
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+ + T +V G+ L++ L + +V WN
Sbjct: 242 TNKTMVSWTT---------------MVVGYAQSGLLDMAWKLFDEMP-----DKDVVPWN 281
Query: 290 AMISGYAKNGYAEEAVKLFPK------------------------------WMDYYIGKS 319
AMI GY +EA+ LF + W+ +YI K
Sbjct: 282 AMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKH 341
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG--------- 370
E NV + T LIDMYAKCG + A F ++ + +A+ G LHG
Sbjct: 342 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYF 401
Query: 371 --------------------------LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLAR 403
L EEG F + K + P+ +HY+ +VDLL R
Sbjct: 402 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 461
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
AG A + I +MPIE V AL A +I
Sbjct: 462 AGLLEEAEELIKSMPIEADAVVWGALFFACRI 493
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 130/334 (38%), Gaps = 95/334 (28%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N ++ GY K G +A LF K + NV+ + ++ Y K G +++A M F
Sbjct: 224 NTILDGYVKAGEMSQAFNLFEKMPE---------RNVVSWSTMVSGYCKTGDMEMARMLF 274
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
D+ K++V + +I G+ E G A ++ ++
Sbjct: 275 DKMPFKNLVTWTIIISGFA-------------------EKGLA----------KEATTLY 305
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
M GL+ + LIS+ A C AE + + K + I
Sbjct: 306 NQMEAAGLKPDDGTLISILAAC---------------------AESGLLVLGKKVHASIK 344
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
K + +V V+ L+DMYAKCG VD A F+ +D+V + M G +HG GE+
Sbjct: 345 KIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQ 404
Query: 378 LFHHI------------------------------------RKHGIEPRHQHYARVVDLL 401
LF + R HGI P +HY ++DLL
Sbjct: 405 LFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLL 464
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R G AF+ + +MP+E + LL A ++
Sbjct: 465 GRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRV 498
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 116/288 (40%), Gaps = 49/288 (17%)
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--A 222
I K N++ V LI ++ C ++LA F++ D +V + + +I + + S A
Sbjct: 46 IIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKA 105
Query: 223 FGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
F +F + N + Y L +L +++H + K G DL + + +
Sbjct: 106 FATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFF--GDLFVPNSLI 163
Query: 279 CRY-------------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK--------W 311
Y + ++ WN+MI G K G A KLF + W
Sbjct: 164 DSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSW 223
Query: 312 ---MDYYIGKSEY-----------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
+D Y+ E NV+ + ++ Y K G +++A M FD+ K++V
Sbjct: 224 NTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLV 283
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
+ + G+ GL +E L++ + G++P ++ A +G
Sbjct: 284 TWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESG 331
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/430 (21%), Positives = 165/430 (38%), Gaps = 112/430 (26%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135
DG + + T L + ++ G+ +HG ++K G + V
Sbjct: 136 DGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFG----------------FMSYVF 179
Query: 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+ + ++ Y+K G A K+F + + +N V+ NT+++ + +CG V+ +
Sbjct: 180 VGSPLVDMYSKMGMISCARKVFDELPE--------KNVVMYNTLIMGL-MRCGRVEDSKR 230
Query: 196 FFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGL----LSNEENEYGTALDCSCDLEF 249
F ++D + ++MI G+ + + A F + L ++ +G+ L +
Sbjct: 231 LFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMA 290
Query: 250 LEQGKIVHGFMIKLGLE---LESDLLISLTAVCR------------YQPNVTLWNAMISG 294
L++GK VH ++I+ + + L+ + C+ NV W AM+ G
Sbjct: 291 LQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVG 350
Query: 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------------------NN 324
Y +NGY+EEAVK F Y I ++ +
Sbjct: 351 YGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF 410
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH--- 381
+ V+ L+ +Y KCGS++ + F+ KD V +A+ GY G E LF
Sbjct: 411 ITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLA 470
Query: 382 ---------------------------------IRKHGIEPRHQHYARVVDLLARAGYSN 408
I +HGI P HY ++DL +RAG
Sbjct: 471 HGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIE 530
Query: 409 HAFKFIMNMP 418
A FI MP
Sbjct: 531 EARNFINKMP 540
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/323 (20%), Positives = 125/323 (38%), Gaps = 58/323 (17%)
Query: 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG 143
N Y L C+ + K +H +IK P L N +IS
Sbjct: 10 NHYCALLKLCCETHNFTKAKNLHSHIIKT----------------LPYPETFLLNNLISS 53
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 203
YAK G A K+F + + N NT+L Y+K G V FD +
Sbjct: 54 YAKLGSIPYACKVFDQM--------PHPNLYSWNTIL-SAYSKLGRVSEMEYLFDAMPRR 104
Query: 204 DVVMRSAMIVGYG--------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255
D V +++I GY + ++ DG + + T L + ++ G+
Sbjct: 105 DGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQ 164
Query: 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
+HG ++K G + V + + ++ Y+K G A K+F + +
Sbjct: 165 IHGHVVKFG----------------FMSYVFVGSPLVDMYSKMGMISCARKVFDELPE-- 206
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
+N V+ NT+++ + +CG V+ + F ++D + ++M G+ +GL +
Sbjct: 207 ------KNVVMYNTLIMGL-MRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDA 259
Query: 376 WVLFHHIRKHGIEPRHQHYARVV 398
+F ++ ++ + V+
Sbjct: 260 IDIFREMKLENLQMDQYTFGSVL 282
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 104/418 (24%), Positives = 155/418 (37%), Gaps = 138/418 (33%)
Query: 96 LEFLEQGKIVHGFMIKLGLE-------------LESDLLISLTAVCR--YQPNVTLRNAM 140
L L G+ VHG ++K GLE E + + VC+ P + N++
Sbjct: 245 LGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSL 304
Query: 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200
I G G E+A +F G +E N + ++I YA G +D + F++
Sbjct: 305 IEGLISMGRIEDAELVFN-------GMTEM--NPVSYNLMIKGYAVGGQMDDSKRLFEKM 355
Query: 201 LDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFM 260
+ + + MI Y S G D LE E+ K
Sbjct: 356 PCRTIFSSNTMISVY-----SRNGEIDK-----------------ALELFEETK------ 387
Query: 261 IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF------------ 308
+ + WN+MISGY +G EEA+KL+
Sbjct: 388 --------------------NEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQ 427
Query: 309 ------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+ + ++ K+ + +NV V T LIDMY+KCGS+ A F
Sbjct: 428 STFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVS 487
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEE-----------------------------------G 375
+V +A+ G+ HGLG E G
Sbjct: 488 IFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEG 547
Query: 376 WVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+FH + R + + P +HYA VVDLL R+G+ A +FI MP+E V ALLSA
Sbjct: 548 MKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSA 605
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 158/414 (38%), Gaps = 100/414 (24%)
Query: 46 LFDGLFDRTIV----FLDLYHLWSRTEWSAFGSFDGLLSN---EENEYGTALDCSCDLEF 98
LFD + RT+V + Y R + F + S+ E+ + + L L
Sbjct: 54 LFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRC 113
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
L GK++H ++K G E S L+ +A++ YA EA ++F
Sbjct: 114 LRDGKLIHCLVLKSGSE--SFELVG--------------SALLYFYASCFEIGEARRVF- 156
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
D + R N ++ ++++ Y C +D A F + +DVV + +I G+
Sbjct: 157 ---DVLV-----RRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKN 208
Query: 216 GLHEWSAFGSFDGLLSNEE---NEYGTALDC---SCD-LEFLEQGKIVHGFMIKLGLE-- 266
G A F ++ + E NE+ DC +C L L G+ VHG ++K GLE
Sbjct: 209 GDGCGKALEIFRLMMRSGETTPNEF--TFDCVVRACGRLGILSVGRTVHGLLMKCGLEYD 266
Query: 267 -----------LESDLLISLTAVCRYQPNVTL---------------------------- 287
E + + VC+ N L
Sbjct: 267 PSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE 326
Query: 288 -----WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
+N MI GYA G +++ +LF K I S +I +Y++ G +D
Sbjct: 327 MNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSS---------NTMISVYSRNGEID 377
Query: 343 LAPMFFDRTL-DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA 395
A F+ T +KD V ++M GY G EE L+ + + I+ ++
Sbjct: 378 KALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFS 431
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 30/202 (14%)
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K Y + +I + I YAK +D+A FD+ + VV + MI Y H
Sbjct: 17 KEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKH 76
Query: 219 E------WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG---LELES 269
+ + + E+ + + L L L GK++H ++K G EL
Sbjct: 77 GRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVG 136
Query: 270 DLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
L+ A C + N LW+ M+ GY ++A+ +F K
Sbjct: 137 SALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMP----- 191
Query: 318 KSEYRNNVIVNTVLIDMYAKCG 339
R +V+ T LI ++K G
Sbjct: 192 ----RRDVVAWTTLISGFSKNG 209
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTL 136
CSC L L QG+++H +IK E LI + + C + PNV
Sbjct: 437 CSC-LGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAA 495
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMD 162
A+I+G+A +G EA+ LF + ++
Sbjct: 496 WTALINGHAYHGLGSEAISLFDRMIE 521
>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
Length = 603
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 150/383 (39%), Gaps = 98/383 (25%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191
P ++ NA++SGYA++GY ++A LF G+ + + V N +I Y + G +
Sbjct: 146 PTTSVCNALLSGYAEHGYLKDAEDLF--------GRMQTPDLVSWN-AMITGYTRAGMMQ 196
Query: 192 LAPMFFDRTLDKDVVMRSAMIVGYGLH-----EWSAFGSF------------DGLLSNEE 234
+A FD +KD V +A++ GY + W F G + +E
Sbjct: 197 VAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVSER 256
Query: 235 NEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--NVTLWNAM 291
+ L D + + I+ G++ + ++ TA R P + WN +
Sbjct: 257 LDDALRLFADMPDRDLVSWNTILQGYVQQGDMD-------GATAWFRKMPEKDEASWNTL 309
Query: 292 ISGY------------AKNGYAEE------AVKLFPKWMDYYIG--------KSEYRNNV 325
ISGY + GY + A+ + G K+ + +
Sbjct: 310 ISGYKDEGALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDA 369
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
+V + LI MY+KCG + A FD + +D V +AM Y HGL E LF + K
Sbjct: 370 LVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKD 429
Query: 386 GIEPRH------------------------------------QHYARVVDLLARAGYSNH 409
G P H HY+ +VDLL R+G+ +
Sbjct: 430 GFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDHYSCMVDLLGRSGFVHQ 489
Query: 410 AFKFIMNMPIELRLSVRRALLSA 432
A+ F +P +L+++ L S+
Sbjct: 490 AYNFTRRIPSDLQINAWETLFSS 512
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 36/252 (14%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ NV N MISG +NG +A +F +RN+V L+ YA+CG V
Sbjct: 21 ERNVFTWNCMISGLVRNGMLTDARGVFDT--------MPFRNSVSW-AALLTGYARCGRV 71
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
A FDR D+ VV +AMI GY ++G++ + + + D+ +L
Sbjct: 72 AEARELFDRMPDRSVVSWNAMISGY---------LWNGMVDRARDLFDV-MPARNDVSWL 121
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ G+M + + ++ + P ++ NA++SGYA++GY ++A LF
Sbjct: 122 ---MMISGYMKRKRVREAREIFDRAPS-----PTTSVCNALLSGYAEHGYLKDAEDLF-- 171
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
G+ + + V N +I Y + G + +A FD +KD V +A+ GY +G
Sbjct: 172 ------GRMQTPDLVSWN-AMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNG 224
Query: 371 LGEEGWVLFHHI 382
+ W +F +
Sbjct: 225 DVDAAWKVFQDM 236
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 90/233 (38%), Gaps = 36/233 (15%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
NAMISGY NG + A LF D + N + ++I Y K V A F
Sbjct: 90 NAMISGYLWNGMVDRARDLF----DVMPAR-----NDVSWLMMISGYMKRKRVREAREIF 140
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
DR + +A++ GY H G L + E+ +G + + ++
Sbjct: 141 DRAPSPTTSVCNALLSGYAEH---------GYLKDAEDLFGRMQTP----DLVSWNAMIT 187
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317
G+ +++ L + + + W A++ GY +NG + A K+F D
Sbjct: 188 GYTRAGMMQVAQRLFDEMP-----EKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPD---- 238
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
+V+ ++ + +D A F D+D+V + + GY G
Sbjct: 239 -----RDVLAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQG 286
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 55/298 (18%)
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLL 230
RN+V+V T +I MY+K G A + FD DK+ V + MI GY +
Sbjct: 106 RNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGY-------------MR 152
Query: 231 SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
S + + D + + + +++GF +K G + E+ L + +P+ + A
Sbjct: 153 SGQVDNAAKMFDKMPERDLISWTAMINGF-VKKGYQEEALLWFREMQISGVKPD---YVA 208
Query: 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+I+ A N F W+ Y+ +++NNV V+ LID+Y +CG V+ A F
Sbjct: 209 IIA--ALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYN 266
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG------------------------ 386
+ VV +++ VG+ +G E V F +++ G
Sbjct: 267 MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEG 326
Query: 387 ------------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
I PR +HY +VDL +RAG A K + +MP++ V +LL+A
Sbjct: 327 LRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAA 384
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 22/230 (9%)
Query: 1 MQVAWVAPNGCTPPLVLKAC--VALPSLLMGPRVHGQIFSLGF-----------LVCYLF 47
M +A V PN T +L C S +G +HG LG + Y
Sbjct: 62 MTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSK 121
Query: 48 DGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLL-SNEENEYGTALDCSCDLEFLEQGKIVH 106
G F + + D + W+ DG + S + + D + + + +++
Sbjct: 122 RGRFKKARLVFDYMEDKNSVTWNTM--IDGYMRSGQVDNAAKMFDKMPERDLISWTAMIN 179
Query: 107 GFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG 166
GF +K G + E+ L + +P+ A+I+ A N F W+ Y+
Sbjct: 180 GF-VKKGYQEEALLWFREMQISGVKPDYV---AIIA--ALNACTNLGALSFGLWVHRYVL 233
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
+++NNV V+ LID+Y +CG V+ A F + VV +++IVG+
Sbjct: 234 SQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFA 283
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 67/221 (30%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------------------K 310
Q +V WN MISGYA+NG+ +EA+++F K
Sbjct: 227 QRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGK 286
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG 370
W+ Y K++ R + ++ + L+DMYAKCGS++ A F+R +V+ +A+ G +HG
Sbjct: 287 WVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHG 346
Query: 371 -----------------------------------LGEEGWVLFHH-IRKHGIEPRHQHY 394
L +EG F+ + G++P+ +HY
Sbjct: 347 KANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHY 406
Query: 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDLL RAGY A + I+NMP++ + +ALL A K+
Sbjct: 407 GCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKM 447
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 158/384 (41%), Gaps = 70/384 (18%)
Query: 4 AWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHL 63
A V PN T P VLKAC + L G +VHG + G L D F T L +Y +
Sbjct: 111 ATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFG-----LVDDEFVVT-NLLRMYVM 164
Query: 64 WSRTE------WSAFGSFDGLLSNEENEYGTALDCS-CDLEFLEQGKIVHGFMIKLGLEL 116
E + D + + +E G + C++ +V G+ L+
Sbjct: 165 CGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNV-------MVDGYARVGNLKA 217
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP------------------ 158
+L + Q +V N MISGYA+NG+ +EA+++F
Sbjct: 218 ARELFDRMA-----QRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSV 272
Query: 159 -------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205
KW+ Y K++ R + ++ + L+DMYAKCGS++ A F+R +V
Sbjct: 273 LPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNV 332
Query: 206 VMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE-QGKIVHGFMIKLG 264
+ +A+I G +H A F+ L E+ + D+ ++ H ++ G
Sbjct: 333 ITWNAVIGGLAMH-GKANDIFNYLSRMEKCGISPS-----DVTYIAILSACSHAGLVDEG 386
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLF---PKWMDYYIGKSEY 321
+D++ S+ +P + + M+ + GY EEA +L P D I K+
Sbjct: 387 RSFFNDMVNSVG----LKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALL 442
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAP 345
+ + + I M A + +AP
Sbjct: 443 GASKMHKNIKIGMRAAEVLMQMAP 466
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 113/448 (25%), Positives = 183/448 (40%), Gaps = 94/448 (20%)
Query: 28 MGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG 87
+G ++HGQ+ LGF YL G LD+Y S G +S+ + +
Sbjct: 154 LGKQIHGQVIKLGF-ESYLLVG-----SPLLDMY------------SKVGCISDAKKVFY 195
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKN 147
D + + G ++ MI+ L+L + + + +AMI G A+N
Sbjct: 196 GLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM----------EKDSVSWSAMIKGLAQN 245
Query: 148 GYAEEAVKLFPKW------MDYY------------------------IGKSEYRNNVIVN 177
G +EA++ F + MD Y I ++ ++++ V
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVG 305
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGL----LS 231
+ LIDMY KC + A FDR K+VV +AM+VGYG A F + +
Sbjct: 306 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGID 365
Query: 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291
+ G A+ ++ LE+G HG I GL Y +T+ N++
Sbjct: 366 PDHYTLGQAISACANISSLEEGSQFHGKAITAGL-------------IHY---ITVSNSL 409
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
++ Y K G +++ +LF + R+ V T ++ YA+ G A FD+
Sbjct: 410 VTLYGKCGDIDDSTRLF--------NEMNVRDEVSW-TAMVSAYAQFGRAVEAIQLFDKM 460
Query: 352 ----LDKDVVMRSAMTVGYGLHGLGEEGWVLFH-HIRKHGIEPRHQHYARVVDLLARAGY 406
L D V + + GL E+G F I ++GI P + HY+ ++DL +R+G
Sbjct: 461 VQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGR 520
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWK 434
A FI MP LLSA +
Sbjct: 521 IEEAMGFINGMPFRPDAIGWTTLLSACR 548
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 33/216 (15%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEY 237
L+ Y+K G + F++ D+D V + +I GY L +A +++ ++ + +
Sbjct: 75 LLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNL 134
Query: 238 G-----TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292
T L S + GK +HG +IKLG E S LL+ + ++
Sbjct: 135 TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFE--SYLLVG--------------SPLL 178
Query: 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
Y+K G +A K+F D RN V+ NT++ + A CG ++ A F R +
Sbjct: 179 DMYSKVGCISDAKKVFYGLDD--------RNTVMYNTLMGGLLA-CGMIEDALQLF-RGM 228
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
+KD V SAM G +G+ +E F ++ G++
Sbjct: 229 EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLK 264
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 98/425 (23%), Positives = 164/425 (38%), Gaps = 125/425 (29%)
Query: 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189
+ PN +++S A + L + I + E+ +++ LIDMYAKCG
Sbjct: 274 FSPNFMTYGSVLSACASTSDLKWGAHLHAR-----ILRMEHSLDLVFGNGLIDMYAKCGC 328
Query: 190 VDLAPMFFDRTLDKDVVMRSAMIVG---YGLHEWSAFGSFDGLLSN----EENEYGTALD 242
+DLA F + D + +++I G +GL E A F+ + + +E T L
Sbjct: 329 LDLAKRVFKSLREHDHISWNSLITGVVHFGLGE-DALILFNQMRRSSVVLDEFILPTILG 387
Query: 243 CSCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVC----------RYQP------ 283
++ G+++HG+ IK G+ + + +I++ A C R P
Sbjct: 388 VCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTIS 447
Query: 284 ---------------------------NVTLWNAMISGYAKNGYAEEAVKLF-------- 308
N+ WN+M+S Y +NG++EE +KL+
Sbjct: 448 WTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGV 507
Query: 309 -PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
P W+ + + K NV V ++ MY++CG + A
Sbjct: 508 QPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKN 567
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLG---------------------------------- 372
FD DKD++ +AM + +GLG
Sbjct: 568 TFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGL 627
Query: 373 -EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
EG F + R GI P ++H++ +VDLL RAG A I MP + +V ALL
Sbjct: 628 VAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALL 687
Query: 431 SAWKI 435
+ ++
Sbjct: 688 GSCRV 692
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 27/216 (12%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG--LHEWSAFGSFDGLLSNE 233
+ ++ MY KCG VDLA F + ++MI GY + A F+ + +
Sbjct: 183 IQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERD 242
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR--YQPNVTLWNAM 291
E + T + Q HGF ++ L +C + PN + ++
Sbjct: 243 EVSWNTLI------SIFSQ----HGFGVQC--------LAMFVEMCNQGFSPNFMTYGSV 284
Query: 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
+S A + L + I + E+ +++ LIDMYAKCG +DLA F
Sbjct: 285 LSACASTSDLKWGAHLHAR-----ILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSL 339
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
+ D + +++ G GLGE+ +LF+ +R+ +
Sbjct: 340 REHDHISWNSLITGVVHFGLGEDALILFNQMRRSSV 375
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 117/484 (24%), Positives = 186/484 (38%), Gaps = 147/484 (30%)
Query: 96 LEFLEQGKIVHGFMIKLGLELES-------DLLISLTAVCRYQP--------NVTLRNAM 140
L LE GK +HG +++ GL+ ++ + +V R + ++ N M
Sbjct: 948 LNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTM 1007
Query: 141 ISGYAKNGYAEEAVKLFPKWMD-----------------------YYIG--------KSE 169
ISG +G E +V +F + YY+ K+
Sbjct: 1008 ISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAG 1067
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
+ V+T LID+Y+K G ++ A F D+ +A++ GY + G F
Sbjct: 1068 VVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVS-----GDFPKA 1122
Query: 230 L--------SNEENEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
L S E ++ T A + L L+QGK +H ++K G L DL ++ +
Sbjct: 1123 LRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNL--DLFVTSGVL 1180
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAV------KLFPKWMDYY 315
Y P+ W MISG +NG E A+ +L D Y
Sbjct: 1181 DMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEY 1240
Query: 316 I----------------GKSEYRNNVIVN--------TVLIDMYAKCGSVDLAPMFFDRT 351
G+ + N V +N T L+DMYAKCG+++ A F RT
Sbjct: 1241 TFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT 1300
Query: 352 LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR---------------------------- 383
+ + +AM VG HG +E F +++
Sbjct: 1301 NTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAY 1360
Query: 384 --------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GIEP +HY+ +VD L+RAG A K I +MP E S+ R LL+A ++
Sbjct: 1361 ENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRV 1420
Query: 436 PMQQ 439
+ +
Sbjct: 1421 QVDR 1424
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 28/162 (17%)
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHEWSAFGSFD------ 227
V LI MYAKCGS+ A FD T D +D+V +A++ H + F
Sbjct: 693 VTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLR 752
Query: 228 -GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--- 283
++S + + +HG+ +K+GL+ D+ ++ V Y
Sbjct: 753 RSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQW--DVFVAGALVNIYAKFGL 810
Query: 284 --------------NVTLWNAMISGYAKNGYAEEAVKLFPKW 311
+V LWN M+ Y EA+ LF ++
Sbjct: 811 IREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEF 852
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 171/459 (37%), Gaps = 147/459 (32%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
LE GK VH F++KLGL + NV++ N++++ YAK G A +F
Sbjct: 162 LETGKKVHSFIVKLGL----------------RGNVSVSNSLLNMYAKCGDPMMAKVVFD 205
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL- 217
+ + ++ +I ++ + G +DLA F++ ++D+V ++MI GY
Sbjct: 206 RMV---------VKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQR 256
Query: 218 -HEWSAFGSF-----DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES-- 269
++ A F D +LS + + L +LE L G+ +H ++ G ++
Sbjct: 257 GYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIV 316
Query: 270 -DLLISLTAVC---------------------------------------------RYQP 283
+ LIS+ + C
Sbjct: 317 LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDR 376
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWM-------DYYIG------------------- 317
+V W AMI GY ++G EA+ LF + Y +
Sbjct: 377 DVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIH 436
Query: 318 ----KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMTVGYGLHGLG 372
KS +V V+ LI MYAK GS+ A FD ++D V ++M + HG
Sbjct: 437 GSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496
Query: 373 EEGWVLFHHIRKHGIEPRH------------------------------------QHYAR 396
EE LF + G+ P H HYA
Sbjct: 497 EEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYAC 556
Query: 397 VVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VDL RAG A +FI MPIE + +LLSA ++
Sbjct: 557 MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRV 595
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 137/379 (36%), Gaps = 127/379 (33%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
+V L N +++ Y+K GYA A KLF + R NTVL YAK G +D
Sbjct: 48 SVYLMNNLMNVYSKTGYALHARKLFDEM--------PLRTAFSWNTVL-SAYAKRGDMDS 98
Query: 193 APMFFDRTLDKDVVMRSAMIVGY-GLHEWSAFGSFDGLLSNEENE-----YGTALDCSCD 246
+ FFDR +D V + MIVGY + ++ G + E E L
Sbjct: 99 SCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAA 158
Query: 247 LEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------------------ 279
LE GK VH F++KLGL S+ L+++ A C
Sbjct: 159 TRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAM 218
Query: 280 -------------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-------D 313
+ ++ WN+MISGY + GY A+ +F K + D
Sbjct: 219 IALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPD 278
Query: 314 YY----------------IGKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMF-- 347
+ IG+ + + V IV LI MY++CG V+ A
Sbjct: 279 RFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338
Query: 348 -------------------------------FDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376
FD D+DVV +AM VGY HGL E
Sbjct: 339 QRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAI 398
Query: 377 VLFHHIRKHGIEPRHQHYA 395
LF + G E R Y
Sbjct: 399 NLFRSMV--GEEQRPNSYT 415
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343
+V L N +++ Y+K GYA A KLF + R NTVL YAK G +D
Sbjct: 48 SVYLMNNLMNVYSKTGYALHARKLFDEM--------PLRTAFSWNTVL-SAYAKRGDMDS 98
Query: 344 APMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA- 402
+ FFDR +D V + M VGY G + + + + GIEP V+ +A
Sbjct: 99 SCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAA 158
Query: 403 ----RAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
G H+ FI+ + + +SV +LL+ +
Sbjct: 159 TRCLETGKKVHS--FIVKLGLRGNVSVSNSLLNMY 191
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 103/422 (24%), Positives = 156/422 (36%), Gaps = 124/422 (29%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN------------------------- 172
N++I+GY + G +E ++L K + + + + Y
Sbjct: 190 NSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCA 249
Query: 173 -------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--- 222
+V+V T L+D YAK G ++ A F D +VVM +AMI G+ E A
Sbjct: 250 VKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEF 309
Query: 223 --------FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDL 271
F + E + + L +E E GK +H + K L E +
Sbjct: 310 ANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNA 369
Query: 272 LISLTAV---------CRYQP---NVTLWNAMISGYAKNGYAEEAVKLFPKWM------- 312
L+ L ++ C + +V W ++I G+ +NG E + LF + +
Sbjct: 370 LVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPD 429
Query: 313 -----------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
Y K+ N I+ I MYAKCG +D A M F
Sbjct: 430 EFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFK 489
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLF----------HHI----------------- 382
T + D+V S M HG +E LF +HI
Sbjct: 490 ETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEE 549
Query: 383 ---------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAW 433
+ HGI P +H A +VDLL RAG A FIM+ E + R+LLSA
Sbjct: 550 GLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSAC 609
Query: 434 KI 435
++
Sbjct: 610 RV 611
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 103/415 (24%), Positives = 166/415 (40%), Gaps = 119/415 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL---------TAVCRY------ 130
Y + CS L GK+ H MIK + LL +L T V +
Sbjct: 22 YTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMP 81
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLF--PKWMDYYIGKSEYRNN--------------- 173
+ NV N++ISGY + G+ E + LF + D + K + N
Sbjct: 82 KRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRL 141
Query: 174 -------------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
V++ LIDMY KCG +D A + F+ + D V +++I GY
Sbjct: 142 IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGY----- 196
Query: 221 SAFGSFDGLL---------SNEENEY--GTALDCSCDLEF---LEQGKIVHGFMIKLGLE 266
GS D +L N Y G+AL +C F +E GK++HG +KLGL+
Sbjct: 197 VRIGSNDEMLRLLVKMLRHGLNLNSYALGSALK-ACGSNFSSSIECGKMLHGCAVKLGLD 255
Query: 267 LESDLLISLTAVCRY-----------------QPNVTLWNAMISGYAK-----NGYAEEA 304
L D+++ + Y PNV ++NAMI+G+ + + +A EA
Sbjct: 256 L--DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEA 313
Query: 305 VKLFPKWMDYYIGKSEY------------------------------RNNVIVNTVLIDM 334
+ LF + + SE+ +++ + L+++
Sbjct: 314 MYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVEL 373
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
Y+ GS++ F T DVV +++ VG+ +G E G LFH + G +P
Sbjct: 374 YSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKP 428
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 177/416 (42%), Gaps = 78/416 (18%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAMI 141
+E+ K H ++K GL +S +L A C +P N M+
Sbjct: 1 MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60
Query: 142 SGYAKNGYAEEAVKLFPKWMDY------------------------------YIGKSEYR 171
G+ K+ EEA+ + + + +I K
Sbjct: 61 RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEWSAFGSFDGLL 230
N+V V LI MY KCG + + F++ ++ V SA+I + L WS G +
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180
Query: 231 SN------EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284
SN EE+ + L L L+ G+ VHGF+++ +++ + N
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLR-----------NVSGL-----N 224
Query: 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 344
V + ++I Y K G + + LF K K++ +V+++ + + Y + G
Sbjct: 225 VIVETSLIEMYLKCGXLYKGMCLFQKMAK----KNKLSYSVMISGLAMHGYGREGLRIFT 280
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLAR 403
M ++ L+ D ++ + GL +EG F+ ++ +HGIEP QHY +VDL+ R
Sbjct: 281 EML-EQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGR 339
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSAWKI--PMQQWENMLQTIRGIDEGEKTD 457
AG + A + I +MP+E + R+LLSA K+ +Q E + + +D + +D
Sbjct: 340 AGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASD 395
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF---------------------LVC 44
V P+ T P +LKAC LP++ G +VH I LG + C
Sbjct: 84 VKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCC 143
Query: 45 YLFDGLFDRTIV---FLDLYHLWSRTEWSAFGSFDGLLSN------EENEYGTALDCSCD 95
+F+ + +R++ L H S WS G +SN EE+ + L
Sbjct: 144 AVFEQMNERSVASWSALITAHA-SLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTH 202
Query: 96 LEFLEQGKIVHGFMIK----LGLELESDLL-------ISLTAVCRYQ----PNVTLRNAM 140
L L+ G+ VHGF+++ L + +E+ L+ +C +Q N + M
Sbjct: 203 LGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVM 262
Query: 141 ISGYAKNGYAEEAVKLFPKWMD 162
ISG A +GY E +++F + ++
Sbjct: 263 ISGLAMHGYGREGLRIFTEMLE 284
>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
Length = 648
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 136/361 (37%), Gaps = 92/361 (25%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMIVGYGL--HEWSAF 223
++ Y+ + +V + L+ +Y+K G + A FD L + +AM+ GY H A
Sbjct: 87 RAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDAL 146
Query: 224 GSF------DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----L 272
F +G +E + + L L +G VH M G S+ L
Sbjct: 147 LVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGAL 206
Query: 273 ISLTAVCRYQP------------NVTLWNAMISGYAKNGYAEEAVKLFPKW--------- 311
+ + CR P NV W A++ G+A+ G EA++LF ++
Sbjct: 207 VDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDS 266
Query: 312 --MDYYIG-------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
+ +G K +V ++DMY KCG D A F
Sbjct: 267 HVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFRE 326
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP--------------------- 389
+VV + M G G HGLG E LF +R G+EP
Sbjct: 327 MRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDEC 386
Query: 390 ---------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
+ +HYA +VDLL RAG A I MP+E + V + LLSA +
Sbjct: 387 RRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACR 446
Query: 435 I 435
+
Sbjct: 447 V 447
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 107/278 (38%), Gaps = 59/278 (21%)
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGLLSNEENEY 237
MY KCG +DLA F D++VV +A++VG+ H + G NEY
Sbjct: 1 MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60
Query: 238 --GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV----------------C 279
+L C + G +HG ++ G + + SL V
Sbjct: 61 TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120
Query: 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE------------------- 320
+ WNAM+SGYA G+ +A+ +F + M + G+ +
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVF-REMRRHEGQHQPDEFTFASLLKACSGLGAT 179
Query: 321 ----------------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+N I+ L+DMY KC + +A F+R K+V+ +A+ V
Sbjct: 180 REGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVV 239
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
G+ G E LF + G P + VV +LA
Sbjct: 240 GHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLA 277
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 112/280 (40%), Gaps = 86/280 (30%)
Query: 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---------------LISLTAVCRY-- 281
A C C L L+QGK +H IK G + SDL +++ V Y
Sbjct: 36 AAKACGC-LVLLDQGKQIHAHAIKAGFD--SDLHVNSGILDMYIKCGDMVNAGIVFNYIS 92
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 321
P+ W +MISG NG ++A++++ + + EY
Sbjct: 93 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ 152
Query: 322 -RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
NVI V T L+DMYAKCG+++ A F + +++ + +AM VG HG
Sbjct: 153 LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGN 212
Query: 372 GEEGWVLFHHIRKHGIEP------------------------------------RHQHYA 395
EE LF ++ HGIEP +HY+
Sbjct: 213 AEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYS 272
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VD L RAG A K I MP + S+ RALL A +I
Sbjct: 273 CLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRI 312
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 50/178 (28%)
Query: 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---------------LISLTAVCRY-- 130
A C C L L+QGK +H IK G + SDL +++ V Y
Sbjct: 36 AAKACGC-LVLLDQGKQIHAHAIKAGFD--SDLHVNSGILDMYIKCGDMVNAGIVFNYIS 92
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-------------------- 170
P+ +MISG NG ++A++++ + + EY
Sbjct: 93 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQ 152
Query: 171 -RNNVI---------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
NVI V T L+DMYAKCG+++ A F + +++ + +AM+VG H
Sbjct: 153 LHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 210
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--------- 132
+E + T + S + LEQG+ +H +IKL + SD + + V Y
Sbjct: 130 DEYTFATLIKASSCVTALEQGRQLHANVIKL--DCVSDPFVGTSLVDMYAKCGNIEDAYR 187
Query: 133 --------NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
N+ L NAM+ G A++G AEEAV LF + I
Sbjct: 188 LFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGI 228
>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
Length = 744
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 131/291 (45%), Gaps = 27/291 (9%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA---- 222
KS Y ++ V L+D+Y K G +D A F+ KDV+ S MI Y + S
Sbjct: 268 KSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVE 327
Query: 223 --FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
F L+ + + + L +E L G +H +IK+GL + S+ L+ + A
Sbjct: 328 MFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYA 387
Query: 278 VC-RYQPNVTL-----------WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325
C R + ++ L WN +I G+ + G E+A++LF ++Y + +E
Sbjct: 388 KCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATE----- 442
Query: 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-IRK 384
+ + + A +++ T+ D + + GL ++G F I+
Sbjct: 443 VTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQD 502
Query: 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HGIEP +HY +V LL R G+ + A K I +P + + V RALL A I
Sbjct: 503 HGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVI 553
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 94/413 (22%), Positives = 162/413 (39%), Gaps = 97/413 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFM--IKLGLELESDLLISLTAVCRYQP--NV 134
+ +E G L C E L++G + F I L + ++SD L + + P N
Sbjct: 49 IQKDEPSRGKGLHC----EILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNT 104
Query: 135 TLRNAMISGYAKNGYAEEAVKLFPK-----------------------------W-MDYY 164
+I GYA++ EA++LF + W +
Sbjct: 105 ISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHAC 164
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
I K + +N V T LID Y+ CG VD+A FD L KD+V + M+ + E F
Sbjct: 165 IFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFA--ENDCFK 222
Query: 225 SFDGLLSN--------EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 276
L S + + LE + GK VHG +K EL DL + +
Sbjct: 223 EALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYEL--DLYVGVA 280
Query: 277 AVCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLF---------PK 310
+ Y + +V W+ MI+ YA++ ++EAV++F P
Sbjct: 281 LLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340
Query: 311 WMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ ++ K ++V V+ L+D+YAKCG ++ + F
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFA 400
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ ++ V + + VG+ G GE+ LF ++ ++ ++ Y+ + A
Sbjct: 401 ESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 453
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 130/323 (40%), Gaps = 114/323 (35%)
Query: 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC---- 279
DGL+ + + L L +E+GK +HGF++KLGL E L+ + +C
Sbjct: 116 DGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMK 175
Query: 280 ---------RYQPNVTLWNAMISGY-------------------------------AKNG 299
R + NV LWN MI GY A+NG
Sbjct: 176 DAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNG 235
Query: 300 YAEEAVKLFP------------------------------KWMDYYIGKSEYRNNVIVNT 329
+ +EA+++F KW+ + K+E + ++ +
Sbjct: 236 HFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGS 295
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMTVGYGLHG------------------ 370
LIDMY+KCGS+D A F+ +K + + SA+ G +HG
Sbjct: 296 ALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVT 355
Query: 371 -----------------LGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFK 412
L EEG +++H + G+ PR +HY +VDLL RAG A +
Sbjct: 356 PSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQ 415
Query: 413 FIMNMPIELRLSVRRALLSAWKI 435
I+NMP++ + +ALL A K+
Sbjct: 416 LILNMPVKPDDVILKALLGACKM 438
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 103/472 (21%), Positives = 185/472 (39%), Gaps = 87/472 (18%)
Query: 2 QVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
+V AP P +L+A SL HG F +G V DG +V Y
Sbjct: 61 RVGLPAPGRRALPSLLRAIAFARSLGTAGAAHGLAFRVGAEV----DGFVGTALV--RAY 114
Query: 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121
R E A FDG+ + +G LDC C E+ ++ M + + + ++
Sbjct: 115 AACGRVE-DARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVII 173
Query: 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181
++ + C + N+ F K + Y+ S+ + V+ L+
Sbjct: 174 ATVLSTCAHTRNLR---------------------FGKAIHSYMLVSDTLIDAQVSCALM 212
Query: 182 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSNEENEYGT 239
+MYA C +++A ++R +K++V+ + M+ GY + A F+G+ + + +
Sbjct: 213 NMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSA 272
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299
+ + E K + L L D+ S +P+ ++IS A G
Sbjct: 273 MI-----AGYAESSKPMEA------LNLFHDMQRS-----GVKPDEITMLSVISACANVG 316
Query: 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
E+A + + ++ + + LIDM++KCGS+ LA F+ K+VV
Sbjct: 317 ALEKA-----RCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTW 371
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI-------------------------------- 387
+++ +HG G LF +++ GI
Sbjct: 372 TSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQ 431
Query: 388 ----EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
EP H+HY +VDLL RA A I +M + + + +LL+A ++
Sbjct: 432 QYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRM 483
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,562,501,457
Number of Sequences: 23463169
Number of extensions: 309844156
Number of successful extensions: 739446
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4963
Number of HSP's successfully gapped in prelim test: 3115
Number of HSP's that attempted gapping in prelim test: 621432
Number of HSP's gapped (non-prelim): 62457
length of query: 462
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 316
effective length of database: 8,933,572,693
effective search space: 2823008970988
effective search space used: 2823008970988
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)