BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036356
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LJL|A Chain A, Wild Type Pi258 S. Aureus Arsenate Reductase
Length = 131
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 359 RSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
RS M G+G LGE GW ++ I HG+ P+ + VD+ SNH I N
Sbjct: 16 RSQMAEGWGKEILGE-GWNVYSAGIETHGVNPKAIEAMKEVDI----DISNHTSDLIDN 69
>pdb|1LK0|A Chain A, Disulfide Intermediate Of C89l Arsenate Reductase From
Pi258
pdb|1LK0|B Chain B, Disulfide Intermediate Of C89l Arsenate Reductase From
Pi258
Length = 131
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 359 RSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
RS M G+G LGE GW ++ I HG+ P+ + VD+ SNH I N
Sbjct: 16 RSQMAEGWGKEILGE-GWNVYSAGIETHGVNPKAIEAMKEVDI----DISNHTSDLIDN 69
>pdb|1JF8|A Chain A, X-ray Structure Of Reduced C10s, C15a Arsenate Reductase
From Pi258
pdb|2FXI|A Chain A, Arsenate Reductase (Arsc From Pi258) C10sC15A DOUBLE
Mutant With Sulfate In Its Active Site
Length = 131
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 359 RSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
RS M G+G LGE GW ++ I HG+ P+ + VD+ SNH I N
Sbjct: 16 RSQMAEGWGKEILGE-GWNVYSAGIETHGVNPKAIEAMKEVDI----DISNHTSDLIDN 69
>pdb|1LJU|A Chain A, X-Ray Structure Of C15a Arsenate Reductase From Pi258
Complexed With Arsenite
Length = 131
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 359 RSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
RS M G+G LGE GW ++ I HG+ P+ + VD+ SNH I N
Sbjct: 16 RSQMAEGWGKEILGE-GWNVYSAGIETHGVNPKAIEAMKEVDI----DISNHTSDLIDN 69
>pdb|2QFC|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|2QFC|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr Complexed
With Papr
pdb|3U3W|A Chain A, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
pdb|3U3W|B Chain B, Crystal Structure Of Bacillus Thuringiensis Plcr In
Complex With The Peptide Papr7 And Dna
Length = 293
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 114 LELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161
LEL+ L LT + YQ N+ + NA+ + YA+NGY ++ + LF + +
Sbjct: 136 LELKKLLNQQLTGIDVYQ-NLYIENAIANIYAENGYLKKGIDLFEQIL 182
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312
LEL+ L LT + YQ N+ + NA+ + YA+NGY ++ + LF + +
Sbjct: 136 LELKKLLNQQLTGIDVYQ-NLYIENAIANIYAENGYLKKGIDLFEQIL 182
>pdb|1RXE|A Chain A, Arsc Complexed With Mnb
pdb|1RXI|A Chain A, Pi258 Arsenate Reductase (Arsc) Triple Mutant C10sC15AC82S
Length = 131
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 359 RSAMTVGYGLHGLGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416
RS M G+G LGE GW ++ I HG+ P+ + VD+ SNH I N
Sbjct: 16 RSQMAEGWGKEILGE-GWNVYSAGIETHGVNPKAIEAMKEVDI----DISNHTSDLIDN 69
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 28.1 bits (61), Expect = 9.6, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
Y N W + + Y K G +EA++ + K ++ Y +E N L + Y K G
Sbjct: 39 YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYN------LGNAYYKQGD 92
Query: 341 VDLAPMFFDRTLD 353
D A ++ + L+
Sbjct: 93 YDEAIEYYQKALE 105
>pdb|3MMP|G Chain G, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|F Chain F, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 589
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI-SGYAKNGYAEEAVKLFPK 310
G V F I+ + +DL++ L + R+ +W+ S Y K KL PK
Sbjct: 403 SGVDVTPFYIRHRIVSPADLILVLNNLYRWATIDGVWDPRAHSVYLK------YRKLLPK 456
Query: 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLDKD 355
+ Y + +V +VLI+ +AK G + P+ D T D++
Sbjct: 457 QLQRNTIPDGYGDGALVGSVLINPFAKNRGWIRYVPVITDHTRDRE 502
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,374,354
Number of Sequences: 62578
Number of extensions: 580278
Number of successful extensions: 1034
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 17
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)