BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036356
(462 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 145/484 (29%), Positives = 218/484 (45%), Gaps = 140/484 (28%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY--------------- 130
Y + +D + L+Q +H ++ LGL+ L+ L
Sbjct: 24 YASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKL---------------FPKWMDYYIGKSE------ 169
+P + NA+I GY++N + ++A+ + FP + G S
Sbjct: 81 RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140
Query: 170 ---------YRNNVIVNTVLIDMYAKCGSVDLAPMFFD--RTLDKDVVMRSAMIVGYG-- 216
+ +V V LI +YAKC + A F+ ++ +V +A++ Y
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQN 200
Query: 217 ------LHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
L +S D + + + L+ L+ L+QG+ +H ++K+GLE+E D
Sbjct: 201 GEPMEALEIFSQMRKMD--VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258
Query: 271 LLISLT---AVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
LLISL A C PN+ LWNAMISGYAKNGYA EA+ +F
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD 318
Query: 309 -----------------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
+ M Y+G+S+YR++V +++ LIDM+AKCGSV+ A
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR 378
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHG------------------------LG--------- 372
+ FDRTLD+DVV+ SAM VGYGLHG LG
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSG 438
Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
EGW F+ + H I P+ QHYA V+DLL RAG+ + A++ I MP++ ++V ALL
Sbjct: 439 MVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498
Query: 431 SAWK 434
SA K
Sbjct: 499 SACK 502
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/413 (30%), Positives = 183/413 (44%), Gaps = 125/413 (30%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCY----- 45
MQ+A V+P+ T P +LKAC L L MG VH Q+F LGF + Y
Sbjct: 110 MQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRR 169
Query: 46 ------LFDG--LFDRTIV---------------------FLDLYHLWSRTEWSAFGSFD 76
+F+G L +RTIV F + + + +W A S
Sbjct: 170 LGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVS-- 227
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT---AVC----- 128
L+ L+ L+QG+ +H ++K+GLE+E DLLISL A C
Sbjct: 228 ------------VLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275
Query: 129 -------RYQPNVTLRNAMISGYAKNGYAEEAVKLF------------------------ 157
PN+ L NAMISGYAKNGYA EA+ +F
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335
Query: 158 ------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
+ M Y+G+S+YR++V +++ LIDM+AKCGSV+ A + FDRTLD+DVV+ SAM
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395
Query: 212 IVGYGLH-----EWSAFGSFD--GLLSNEENEYGTALDCS---------------CDLEF 249
IVGYGLH S + + + G+ N+ G + C+ D +
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKI 455
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAE 302
Q + + LG D + QP VT+W A++S K+ + E
Sbjct: 456 NPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 129/470 (27%), Positives = 195/470 (41%), Gaps = 134/470 (28%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLT---AVCRYQPNVTLR-------------NAMIS 142
L GK +HG ++K G L+ + L A CR Q N + N +++
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR-QVNEARKVFDRMPERDLVSWNTIVA 209
Query: 143 GYAKNGYAEEA-------------------VKLFP-----------KWMDYYIGKSEYRN 172
GY++NG A A V + P K + Y +S + +
Sbjct: 210 GYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDS 269
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLL 230
V ++T L+DMYAKCGS++ A FD L+++VV ++MI Y +E A F +L
Sbjct: 270 LVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML 329
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR--- 280
+ AL DL LE+G+ +H ++LGL+ + LIS+ C+
Sbjct: 330 DEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVD 389
Query: 281 ---------YQPNVTLWNAMISGYAKNGYAEEAVKLFP---------------------- 309
+ WNAMI G+A+NG +A+ F
Sbjct: 390 TAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIA 449
Query: 310 --------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 361
KW+ + +S NV V T L+DMYAKCG++ +A + FD ++ V +A
Sbjct: 450 ELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNA 509
Query: 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR------------------------------- 390
M GYG HG G+ LF ++K I+P
Sbjct: 510 MIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENY 569
Query: 391 -----HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
HY +VDLL RAG N A+ FIM MP++ ++V A+L A +I
Sbjct: 570 SIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQI 619
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 139/525 (26%), Positives = 216/525 (41%), Gaps = 120/525 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M + V + T V K+ +L S+ G ++HG I GF G + L
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGF-------GERNSVGNSLVA 238
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 120
++L ++ SA FD + + + + ++ E+G V M+ G+E++
Sbjct: 239 FYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 298
Query: 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180
++S+ A C ++L A+ S K ++ R + NT L
Sbjct: 299 IVSVFAGCADSRLISLGRAVHSIGVKACFS--------------------REDRFCNT-L 337
Query: 181 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE---- 236
+DMY+KCG +D A F D+ VV ++MI GY + G L E E
Sbjct: 338 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA--GEAVKLFEEMEEEGISP 395
Query: 237 ----YGTALDCSCDLEFLEQGKIVHGFMIK--LGLEL-ESDLLISLTAVCRYQPNVTL-- 287
L+C L++GK VH ++ + LG ++ S+ L+ + A C L
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 455
Query: 288 ----------WNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 314
WN +I GY+KN YA EA+ LF ++
Sbjct: 456 SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 515
Query: 315 --------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
YI ++ Y ++ V L+DMYAKCG++ LA M FD KD+V + M GY
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 575
Query: 367 GLHGLGEEGWVLFHHIRKHGIE------------------------------------PR 390
G+HG G+E LF+ +R+ GIE P
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 635
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HYA +VD+LAR G A++FI NMPI ++ ALL +I
Sbjct: 636 VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 86/358 (24%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WS 221
+I +S +R+++++ L++MYAKCGS++ A F++ +D V + +I GY H+
Sbjct: 85 HILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCD 144
Query: 222 AFGSFDGLL----SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
A F+ +L S E + + + G +HGF +K G + + +L
Sbjct: 145 ALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLD 204
Query: 278 V-CRY--------------QPNVTLWNAMISGYAKNGYAEEAVKLFP------------- 309
+ RY N WNA+I+G+A+ E+A++LF
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264
Query: 310 -----------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
KW+ Y+ KS + L+DMYAK GS+ A FDR
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324
Query: 353 DKDVVMRSAMTVGYGLHGLG-----------------------------------EEGWV 377
+DVV +++ Y HG G +EGW
Sbjct: 325 KRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384
Query: 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+ ++K GI P HY VVDLL RAG N A +FI MPIE ++ +ALL+A ++
Sbjct: 385 YYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 442
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 43/194 (22%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTIV 56
+PN T V+KA A G ++HG GF L Y GL D +
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQL 217
Query: 57 FLDLYHLWSRTEWSAFGS--------------FDGLLSN----EENEYGTALDCSCDLEF 98
D + W+A + F G+L + Y + F
Sbjct: 218 VFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGF 277
Query: 99 LEQGKIVHGFMIKLGLEL---ESDLLISLTAVCRY------------QPNVTLRNAMISG 143
LEQGK VH +MIK G +L + L+ + A + +V N++++
Sbjct: 278 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 337
Query: 144 YAKNGYAEEAVKLF 157
YA++G+ +EAV F
Sbjct: 338 YAQHGFGKEAVWWF 351
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 121/444 (27%)
Query: 112 LGLELESDLLISLTAVCRYQP--NVTLRNAMISGYAKNGYAEEAVKLFPKWM-------- 161
+G+ ++ L+ V Y P N + M+SGYA G EEA+K+F ++
Sbjct: 160 VGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSD 219
Query: 162 -DY-------------YIG----------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
DY Y+G K+ V ++ L+ MY+KC S++ A F
Sbjct: 220 SDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMF 279
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWS--AFGSFDGLLSN--EENEYGTA--LDCSCDLEFLE 251
D + D++ + SAM+ GY + S A F + S + +EY L+ D+ +LE
Sbjct: 280 DSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLE 339
Query: 252 QGKIVHGFMIKLGLE---LESDLLISLTAV------------CRYQPNVTLWNAMISGYA 296
+GK +H F++KLG E + L+ + A C + +V LW ++ISGY
Sbjct: 340 EGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYV 399
Query: 297 KNGYAEEAVKLFPKWMDYYI----------------------GKSEYRNN--------VI 326
+N EEA+ L+ + I GK + + V
Sbjct: 400 QNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 459
Query: 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE------------ 374
+ + L MY+KCGS++ + F RT +KDVV +AM G +G G+E
Sbjct: 460 IGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEG 519
Query: 375 -----------------------GWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHA 410
GW F+ + G++P+ HYA +VDLL+RAG A
Sbjct: 520 MEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEA 579
Query: 411 FKFIMNMPIELRLSVRRALLSAWK 434
+FI + I+ L + R LLSA K
Sbjct: 580 KEFIESANIDHGLCLWRILLSACK 603
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 129/314 (41%), Gaps = 59/314 (18%)
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH-----EWSAFGSFDGLLSNE 233
VL++ YAKCG + A F+ + KDVV +++I GY + ++ F + + +
Sbjct: 54 VLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQD 113
Query: 234 --ENEYGTA--LDCSCDLEFLEQGKIVHGFMIKL-------------GLELESDLLISLT 276
N Y A L+ G+ H ++K+ G+ ++ L+
Sbjct: 114 ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGL 173
Query: 277 AVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWM---------DY----------- 314
V Y P N W+ M+SGYA G EEA+K+F ++ DY
Sbjct: 174 KVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAA 233
Query: 315 --YIG----------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362
Y+G K+ V ++ L+ MY+KC S++ A FD + D++ + SAM
Sbjct: 234 TIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAM 293
Query: 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY---SNHAFKFIMNMPI 419
GY +G E LF + GI+P V++ + Y F++ +
Sbjct: 294 VTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGF 353
Query: 420 ELRLSVRRALLSAW 433
E L AL+ +
Sbjct: 354 ERHLFATTALVDMY 367
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 152/401 (37%), Gaps = 101/401 (25%)
Query: 99 LEQGKIVHGFMIKLGLEL---ESDLLISLTAVCRYQP------------NVTLRNAMISG 143
L G+ VHG +I+ G +++L++ A C +V N++I+G
Sbjct: 30 LVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITG 89
Query: 144 YAKNGYAEEA---VKLFPKWMDYYIGKSEYR----------------------------- 171
Y++NG + ++LF + I + Y
Sbjct: 90 YSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSS 149
Query: 172 -NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFGSFDG 228
++ V+T L+ MY K G V+ F +++ S M+ GY A F+
Sbjct: 150 FGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNL 209
Query: 229 LLSNEENE------YGTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLLISLTAVC 279
L +E + L ++ G+ +H IK LG S+ L+++ + C
Sbjct: 210 FLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKC 269
Query: 280 RY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------ 321
N W+AM++GY++NG + EAVKLF + I SEY
Sbjct: 270 ESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVL 329
Query: 322 ------------------------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
++ T L+DMYAK G + A FD ++DV
Sbjct: 330 NACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVA 389
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+ +++ GY + EE +L+ ++ GI P A V+
Sbjct: 390 LWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVL 430
Score = 39.3 bits (90), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF 41
M+ A + PN T VLKAC +L +L +G +VHG GF
Sbjct: 414 MKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGF 454
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 122/501 (24%), Positives = 192/501 (38%), Gaps = 136/501 (27%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 130
L + Y A+ + G+++HG + G + S+LL+ V Y
Sbjct: 115 LKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCD--SELLLGSNIVKMYFKFWRVED 172
Query: 131 ---------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGK-------------- 167
+ + L N MISGY KN E++++F ++ +
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232
Query: 168 --SEYRNNVIVNTV---------------LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
E R + ++++ I +Y+KCG + + F D+V +A
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNA 292
Query: 211 MIVGY---GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267
MI GY G E S + +LS T + L +HG+ +K
Sbjct: 293 MIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLS 352
Query: 268 ESDLLISLTAVCRY-------------QPNVTL--WNAMISGYAKNGYAEEAVKLFP--- 309
+ + +LT V P +L WNAMISGY +NG E+A+ LF
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412
Query: 310 ---------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342
KW+ + +++ +++ V+T LI MYAKCGS+
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIA 472
Query: 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH--------------------- 381
A FD K+ V + M GYGLHG G+E +F+
Sbjct: 473 EARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532
Query: 382 ---------------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVR 426
I ++G EP +HYA +VD+L RAG+ A +FI M IE SV
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVW 592
Query: 427 RALLSAWKIPMQQWENMLQTI 447
LL A +I + N+ +T+
Sbjct: 593 ETLLGACRI--HKDTNLARTV 611
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 125/481 (25%), Positives = 180/481 (37%), Gaps = 138/481 (28%)
Query: 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL-------------ISLTAVCRYQPN 133
T L L FLE GK +H +++ GLE+++ L+ I+ + PN
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPN 312
Query: 134 VTLRN--AMISGYAKNGYAEEAVKLFPKWMDY---------------------------- 163
+ + ++SGY +N +EA++LF +
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQV 372
Query: 164 --YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----- 216
Y K+ N+ V LIDMYAKC + A FD DVV+ +AMI GY
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQ 432
Query: 217 --LHEWSAFGSFDG----LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-- 268
LHE A F L+ + + L S L L K +HG M K GL L+
Sbjct: 433 WELHE--ALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIF 490
Query: 269 -SDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLF------- 308
LI + + C ++ +WN+M +GY + EEA+ LF
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSR 550
Query: 309 --PKWMDY---------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
P + + K N + L+DMYAKCGS + A
Sbjct: 551 ERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAH 610
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLG--------------------------------- 372
FD +DVV +++ Y HG G
Sbjct: 611 KAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAG 670
Query: 373 --EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALL 430
E+G F + + GIEP +HY +V LL RAG N A + I MP + V R+LL
Sbjct: 671 LVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLL 730
Query: 431 S 431
S
Sbjct: 731 S 731
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 157/407 (38%), Gaps = 102/407 (25%)
Query: 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA----------VCRYQ 131
E+ L + L +VHG +I GLEL+ S++LI+L + V
Sbjct: 46 EFARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKM 105
Query: 132 P--NVTLRNAMISGYAKNGYAEEAVKLF-----------------------------PKW 160
P N+ + M+S +G EE++ +F +W
Sbjct: 106 PERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW 165
Query: 161 MDY----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
M + ++ KS + +V V T+LID Y K G++D A + FD +K V + MI G
Sbjct: 166 MVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCV 225
Query: 217 L--HEWSAFGSFDGLLSNEENEYG----TALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
+ + F L+ + G T L L FLE GK +H +++ GLE+++
Sbjct: 226 KMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDAS 285
Query: 271 L---LISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY- 314
L LI C N+ W ++SGY +N +EA++LF +
Sbjct: 286 LMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFG 345
Query: 315 -----------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
Y K+ N+ V LIDMYAKC + A
Sbjct: 346 LKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDAR 405
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLG---EEGWVLFHHIRKHGIEP 389
FD DVV+ +AM GY G E +F +R I P
Sbjct: 406 KVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRP 452
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 104/282 (36%), Gaps = 67/282 (23%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------------RYQPNV 134
L S L L K +HG M K GL L+ LI + + C ++
Sbjct: 461 LRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520
Query: 135 TLRNAMISGYAKNGYAEEAVKLF---------PKWMDY---------------------Y 164
+ N+M +GY + EEA+ LF P +
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSA 222
+ K N + L+DMYAKCGS + A FD +DVV +++I Y H A
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKA 640
Query: 223 FGSFDGLLSNE-ENEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
+ ++S E Y T L +E G M++ G+E E++ + + ++
Sbjct: 641 LQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSL 700
Query: 279 C----------------RYQPNVTLWNAMISGYAKNGYAEEA 304
+P +W +++SG AK G E A
Sbjct: 701 LGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELA 742
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 145/593 (24%), Positives = 219/593 (36%), Gaps = 162/593 (27%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
M V + P VL AC + SL +G ++HG + LGF VC L+
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 338
Query: 57 FLDLYHLWSRTEWS---------------AFGS----------FDGLLSNEENEYGTALD 91
+ H++S +G DGL + +
Sbjct: 339 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398
Query: 92 CSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC------------RYQPNVTL 136
CS D +G+ +H + KLG + + L++L A C NV L
Sbjct: 399 CSADGTLF-RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVL 457
Query: 137 RNAMISGYA-----KNGYA-------EEAVK---LFPKWM-------DYYIG-------- 166
N M+ Y +N + EE V +P + D +G
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SAFG 224
K+ ++ N V +VLIDMYAK G +D A R KDVV + MI GY + + A
Sbjct: 518 KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALT 577
Query: 225 SFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
+F +L +E G A+ L+ L++G+ +H G + + L++L +
Sbjct: 578 TFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYS 637
Query: 278 VCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLF----------------- 308
C L WNA++SG+ ++G EEA+++F
Sbjct: 638 RCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGS 697
Query: 309 -------------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
K + I K+ Y + V LI MYAKCGS+ A F K+
Sbjct: 698 AVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKN 757
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHI--------------------------------- 382
V +A+ Y HG G E F +
Sbjct: 758 EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 817
Query: 383 ---RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
++G+ P+ +HY VVD+L RAG + A +FI MPI+ V R LLSA
Sbjct: 818 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 113/459 (24%), Positives = 171/459 (37%), Gaps = 93/459 (20%)
Query: 6 VAPNGCTPPLVLKACVALP-SLLMGPRVHGQIFSLGFLV--CYLFDGLFDRTIVFLDLYH 62
+ PN T +L+ C+ SL G ++H QI LG C L + LFD + DLY
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGC-LSEKLFDFYLFKGDLY- 137
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
AF FD E E+ MIK EL S LI
Sbjct: 138 -------GAFKVFD--------------------EMPERTIFTWNKMIK---ELASRNLI 167
Query: 123 SLTA---VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
V NVT SG + + + I R++ +V
Sbjct: 168 GEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNP 227
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA-----FGSFDGL-LSNE 233
LID+Y++ G VDLA FD KD AMI G +E A F L +
Sbjct: 228 LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT 287
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------------ 281
+ + L +E LE G+ +HG ++KLG SD + V Y
Sbjct: 288 PYAFSSVLSACKKIESLEIGEQLHGLVLKLG--FSSDTYVCNALVSLYFHLGNLISAEHI 345
Query: 282 -----QPNVTLWNAMISGYAKNGYAEEAVKLFPK-------------------------- 310
Q + +N +I+G ++ GY E+A++LF +
Sbjct: 346 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 405
Query: 311 ----WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGY 366
+ Y K + +N + L+++YAKC ++ A +F T ++VV+ + M V Y
Sbjct: 406 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465
Query: 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
GL + +F ++ I P Y ++ R G
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 117/473 (24%), Positives = 190/473 (40%), Gaps = 138/473 (29%)
Query: 100 EQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGY 144
+QG VH +++K G L S+ LI + CR + NV +A++SG+
Sbjct: 23 DQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGH 82
Query: 145 AKNGYAEEAVKLFPKWMDYYIGKSEYRNN------------------------------V 174
NG + ++ LF + I +E+ + V
Sbjct: 83 VLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMV 142
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVG-----YGLHEWSAFGSF-DG 228
V L+DMY+KCG ++ A F R +D+ ++ +AMI G YG FG +
Sbjct: 143 EVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202
Query: 229 LLSNEENEYG-TALDCSCDLE-FLEQGKIVHGFMIKLGLELESDL-----LISLTAVCRY 281
+ +E+ T+L +C + GK +HGF+++ G S L+ L C Y
Sbjct: 203 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 262
Query: 282 ------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK------------------- 310
+ + W+++I GYA+ G EA+ LF +
Sbjct: 263 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGV 322
Query: 311 WMDYYIGKSEYR------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
+ D+ + + + ++N+V +DMY KCG VD A F KDV+
Sbjct: 323 FADFALLRQGKQMQALAVKLPSGLETSVLNSV-VDMYLKCGLVDEAEKCFAEMQLKDVIS 381
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKH--------------------------------- 385
+ + GYG HGLG++ +F+ + +H
Sbjct: 382 WTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLL 441
Query: 386 ---GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
GI+PR +HYA VVDLL RAG A I MPI+ + + + LLS ++
Sbjct: 442 ETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 494
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 120/320 (37%), Gaps = 71/320 (22%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------------LVC-YLF--- 47
P+ T +LKAC + + G ++HG + GF + C YLF
Sbjct: 208 PDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSAR 267
Query: 48 ---DGLFDRTIVFLDLYHLWSRTEWS---AFGSFDGL--LSNEENEYG--TALDCSCDLE 97
D + ++T++ L E A G F L L+++ + + + + D
Sbjct: 268 KAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFA 327
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLF 157
L QGK + +KL LE+ +L N+++ Y K G +EA K F
Sbjct: 328 LLRQGKQMQALAVKLPSGLETSVL----------------NSVVDMYLKCGLVDEAEKCF 371
Query: 158 PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG----SVDLAPMFFDRTLDKDVVMRSAMIV 213
+ +VI TV+I Y K G SV + ++ D V A++
Sbjct: 372 AEMQ---------LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVL- 421
Query: 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273
+ S G++ E + L+ +E V + + G E+ LI
Sbjct: 422 --------SACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLI 473
Query: 274 SLTAVCRYQPNVTLWNAMIS 293
+ +PNV +W ++S
Sbjct: 474 DTMPI---KPNVGIWQTLLS 490
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 170/460 (36%), Gaps = 165/460 (35%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS------------LTAVCRY-----QP 132
+ + ++ L G+ +HG +K + SD+ ++ L + C+ +
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVG--SDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMD------------------------------ 162
+V N+MI+G+ + G ++A++LF K
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA 222
YI ++ N+ + ++DMY KCGS++ A FD +KD V + M+ GY
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA------ 309
Query: 223 FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282
I E ++L S+ Q
Sbjct: 310 --------------------------------------ISEDYEAAREVLNSMP-----Q 326
Query: 283 PNVTLWNAMISGYAKNGYAEEAVKLFP-------------------------------KW 311
++ WNA+IS Y +NG EA+ +F +W
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
+ YI K R N V + LI MY+KCG ++ + F+ +DV + SAM G +HG
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 372 G-----------------------------------EEGWVLFHHIR-KHGIEPRHQHYA 395
G +E LFH + +GI P +HYA
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 396 RVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+VD+L R+GY A KFI MPI SV ALL A KI
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKI 546
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 141/570 (24%), Positives = 212/570 (37%), Gaps = 166/570 (29%)
Query: 2 QVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY 61
++W P+ T P V KAC + S+ G H GF+ V L
Sbjct: 120 SLSWT-PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFI---------SNVFVGNALV 169
Query: 62 HLWSRTEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 119
++SR A FD + + + + ++ + + GK K+ LE+ S
Sbjct: 170 AMYSRCRSLSDARKVFDEMSVWDVVSWNSIIE-----SYAKLGKP------KVALEMFSR 218
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
+ CR N+TL N + A K + + SE N+ V
Sbjct: 219 MTNEFG--CR-PDNITLVNVLPP------CASLGTHSLGKQLHCFAVTSEMIQNMFVGNC 269
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG----------------------- 216
L+DMYAKCG +D A F KDVV +AM+ GY
Sbjct: 270 LVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMD 329
Query: 217 LHEWSA--------------FGSFDGLLSN--EENEYG--TALDCSCDLEFLEQGKIVHG 258
+ WSA G +LS+ + NE + L + L GK +H
Sbjct: 330 VVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHC 389
Query: 259 FMIKLGLELESD----------LLISLTAVCRY--------------QPNVTLWNAMISG 294
+ IK ++L + LI + A C+ + +V W MI G
Sbjct: 390 YAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGG 449
Query: 295 YAKNGYAEEAVKLFPKWMD------------------------YYIGKSEY----RNN-- 324
Y+++G A +A++L + + IGK + RN
Sbjct: 450 YSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN 509
Query: 325 ---VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
+ V+ LIDMYAKCGS+ A + FD + K+ V +++ GYG+HG GEE +F
Sbjct: 510 AVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDE 569
Query: 382 IRK------------------------------------HGIEPRHQHYARVVDLLARAG 405
+R+ G+ P +HYA +VDLL RAG
Sbjct: 570 MRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAG 629
Query: 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
N A + I MP+E V A LS +I
Sbjct: 630 RLNAALRLIEEMPMEPPPVVWVAFLSCCRI 659
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 119/472 (25%), Positives = 185/472 (39%), Gaps = 142/472 (30%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--LISLTAVC-------RYQPNVTL 136
+ AL +L+ L+ GK +H ++K+ L L+ + A C + ++TL
Sbjct: 145 FSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITL 204
Query: 137 RN-----AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-------------- 177
RN +MI+GY KN EE + LF + + + +EY ++
Sbjct: 205 RNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWF 264
Query: 178 ----------------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
T L+DMY KCG + A F+ D+VM +AMIVGY +
Sbjct: 265 HGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGY-----T 319
Query: 222 AFGSFDGLLSNEENEYGTALDCSCD-----------LEFLEQGKIVHGFMIKLGL--ELE 268
GS + LS + G + +C +E LE G+ VHG IK+G+
Sbjct: 320 HNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNV 379
Query: 269 SDLLISLTAVC------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM---- 312
++ L+ + A C + ++ WN++ISG+++NG EA+ LF +
Sbjct: 380 ANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESV 439
Query: 313 ------------------DYYIGKSEY----------RNNVIVNTVLIDMYAKCGSVDLA 344
+G S + ++V V T L+D YAKCG A
Sbjct: 440 TPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA 499
Query: 345 PMFFDRTLDKDVVMRSAMTVGYGLH----------------------------------- 369
+ FD +K+ + SAM GYG
Sbjct: 500 RLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHT 559
Query: 370 GLGEEGWVLFHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
G+ EG F + K + P +HY +VD+LARAG A I MPI+
Sbjct: 560 GMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQ 611
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 128/311 (41%), Gaps = 55/311 (17%)
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG--SFDGLLSN 232
+V T L+DMYAKCG + A F+ ++VV ++MI GY ++ G F+ + N
Sbjct: 177 VVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN 236
Query: 233 ----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---C------ 279
E YGT + L L QGK HG ++K G+EL S L+ SL + C
Sbjct: 237 NVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNA 296
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM--------------------- 312
++ +W AMI GY NG EA+ LF K
Sbjct: 297 RRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLI 356
Query: 313 -DYYIGKSEYRNNVIVN-------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
+ +G+S + ++ V L+ MYAKC A F+ +KD+V +++
Sbjct: 357 ENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIIS 416
Query: 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR-----AGYSNHAFKFIMNMPI 419
G+ +G E LFH + + P A + A G S HA+ +
Sbjct: 417 GFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLA 476
Query: 420 ELRLSVRRALL 430
+ V ALL
Sbjct: 477 SSSVHVGTALL 487
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 115/279 (41%), Gaps = 56/279 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA--FGSFDGLL 230
++ + T L+ +Y G A + FD+ + D + M+ Y L++ S +D L+
Sbjct: 75 DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLM 134
Query: 231 SN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKL---------GL--------ELES 269
+ ++ + AL +L+ L+ GK +H ++K+ GL E++S
Sbjct: 135 KHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKS 194
Query: 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN- 328
+ R NV W +MI+GY KN EE + LF + + + +EY ++
Sbjct: 195 AHKVFNDITLR---NVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMA 251
Query: 329 -----------------------------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
T L+DMY KCG + A F+ D+VM
Sbjct: 252 CTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMW 311
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398
+AM VGY +G E LF ++ I+P A V+
Sbjct: 312 TAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVL 350
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 145/378 (38%), Gaps = 102/378 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGL--ELESDLLISLTAVC------------RYQPNVTLRNAMI 141
+E LE G+ VHG IK+G+ ++ L+ + A C + ++ N++I
Sbjct: 356 IENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSII 415
Query: 142 SGYAKNGYAEEAVKLFPKWM----------------------DYYIGKSEY--------- 170
SG+++NG EA+ LF + +G S +
Sbjct: 416 SGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFL 475
Query: 171 -RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL 229
++V V T L+D YAKCG A + FD +K+ + SAMI GYG
Sbjct: 476 ASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYG------------- 522
Query: 230 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289
+QG + LEL ++L + +PN + +
Sbjct: 523 ---------------------KQGDTIG------SLELFEEMLKK-----QQKPNESTFT 550
Query: 290 AMISGYAKNGYAEEAVKLFPK-WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 348
+++S G E K F + DY S T ++DM A+ G ++ A
Sbjct: 551 SILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKH-----YTCMVDMLARAGELEQALDII 605
Query: 349 DRT-LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-QHYARVVDLLARAGY 406
++ + DV A G G+H + G ++ + + P +Y V +L A G
Sbjct: 606 EKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLD--LHPDDASYYVLVSNLYASDGR 663
Query: 407 SNHAFKFIMNMPIELRLS 424
N A K + N+ + LS
Sbjct: 664 WNQA-KEVRNLMKQRGLS 680
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 82/230 (35%), Gaps = 46/230 (20%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M V PNG T + AC +L SL +G +H LGFL LD
Sbjct: 434 MNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLA----SSSVHVGTALLDF 489
Query: 61 YHLWSRTEWSAFGSFDGLLSNEENE---------YGTALDCSCDLEFLEQGKIVHGFMIK 111
Y + SA FD + E+N YG D LE E+ M+K
Sbjct: 490 YAKCGDPQ-SARLIFDTI--EEKNTITWSAMIGGYGKQGDTIGSLELFEE-------MLK 539
Query: 112 LGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK-WMDYYIGKSEY 170
+ +PN + +++S G E K F + DY S
Sbjct: 540 K----------------QQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTK 583
Query: 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVMRSAMIVGYGLHE 219
T ++DM A+ G ++ A ++ + DV A + G G+H
Sbjct: 584 H-----YTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHS 628
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 157/380 (41%), Gaps = 100/380 (26%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS 168
P+V+ N MI GYAK G++ EA+KL+ K + D +GK
Sbjct: 194 HPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKG 253
Query: 169 E----------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--- 215
Y +N+I++ L+DMY KC LA FD KD+ + M+VG+
Sbjct: 254 VHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRL 313
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTAL----DCSCDLEFLEQGKIVHGFMIKLGLELESDL 271
G E +A FD + + + + L CD + + L
Sbjct: 314 GDME-AAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRE------------------L 354
Query: 272 LISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331
+T V + +P+ ++ISG A NG +W+ + + + + + +++ L
Sbjct: 355 FYEMTIVEKVKPDRVTMVSLISGAANNGELSHG-----RWVHGLVIRLQLKGDAFLSSAL 409
Query: 332 IDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG------------------- 372
IDMY KCG ++ A M F +KDV + ++M G HG G
Sbjct: 410 IDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNN 469
Query: 373 ----------------EEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415
EEG +F+H++ K G +P +HY +VDLL RAG A +
Sbjct: 470 VTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQ 529
Query: 416 -NMPIELRLSVRRALLSAWK 434
MP+ S+ ++LSA +
Sbjct: 530 KKMPMRPSQSMWGSILSACR 549
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
L+ Y + G+ +A F R DV + M VGY G E L+ + GIEP
Sbjct: 172 LVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEP 230
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 123/569 (21%), Positives = 214/569 (37%), Gaps = 158/569 (27%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFD-----GLFDRTIVF 57
P+ P V KAC AL G VHG + G F+ L D G+ D
Sbjct: 171 PDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKV 230
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENE--------------------YGTALDCSCDLE 97
D + W+A G + N +NE T L S ++
Sbjct: 231 FDEIPDRNAVAWNAL--MVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMG 288
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAV-CR--------------YQPNVTLRNAMIS 142
+E+GK H I G+EL++ L SL C+ ++ +V N +IS
Sbjct: 289 GVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIIS 348
Query: 143 GYAKNGYAEEAVKL------------------------------FPKWMDYYIGKSEYRN 172
GY + G E+A+ + K + Y + + +
Sbjct: 349 GYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFES 408
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN 232
++++ + ++DMYAKCGS+ A FD T++KD+++ + ++ Y + LS
Sbjct: 409 DIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA----------ESGLSG 458
Query: 233 EENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290
E YG L+ + I+ + ++ D+ + + + PN+ W
Sbjct: 459 EALRLFYGMQLE-GVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQS-SGIIPNLISWTT 516
Query: 291 MISGYAKNGYAEEAVKLFPKWMD-------------------------------YYIGKS 319
M++G +NG +EEA+ K + Y I
Sbjct: 517 MMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNL 576
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
++ + V + T L+DMYAKCG ++ A F L ++ + +AM Y L+G +E L+
Sbjct: 577 QHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALY 636
Query: 380 HHIRKHGIEPRH------------------------------------QHYARVVDLLAR 403
+ G++P + +HY +VDLLA
Sbjct: 637 RSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLAS 696
Query: 404 AGYSNHAFKFIMNMPIELRLSVRRALLSA 432
AG + A + I MP + + ++L+++
Sbjct: 697 AGETEKALRLIEEMPFKPDARMIQSLVAS 725
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 53/266 (19%)
Query: 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---VGYGLHEWSAFGSF 226
Y N + T L+ YAKC ++++A + F + ++V +A+I GL E + G F
Sbjct: 103 YARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMG-F 161
Query: 227 DGLLSNEENEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLE----LESDL------- 271
+L NE + C L++ G+ VHG+++K GLE + S L
Sbjct: 162 VEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKC 221
Query: 272 --LISLTAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------- 316
L + V P N WNA++ GY +NG EEA++LF +
Sbjct: 222 GVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCL 281
Query: 317 -----------GKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357
GK + + I+ T L++ Y K G ++ A M FDR +KDVV
Sbjct: 282 SASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVV 341
Query: 358 MRSAMTVGYGLHGLGEEGWVLFHHIR 383
+ + GY GL E+ + +R
Sbjct: 342 TWNLIISGYVQQGLVEDAIYMCQLMR 367
>sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2
SV=1
Length = 820
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 107/457 (23%), Positives = 183/457 (40%), Gaps = 146/457 (31%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAMI 141
+++ + +G M+KLG E DL + +A+ Y + N+ + N MI
Sbjct: 230 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMI 289
Query: 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN---------------------------- 173
Y +N E+++LF + IG E ++
Sbjct: 290 GVYVQNDCLVESIELFLEA----IGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVS 345
Query: 174 --------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSA 222
VIVN++++ MY++CGSV + F ++DVV + MI + GL +
Sbjct: 346 KNFRELPIVIVNSLMV-MYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGL 404
Query: 223 FGSFDGLLSNEENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELE--SDLLI---S 274
++ + +Y T L + +L E GK H F+I+ G++ E + LI S
Sbjct: 405 MLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYS 464
Query: 275 LTAVCRYQPNV-----------TLWNAMISGYAKNGYAEEAVKLFPKWMDYYI------- 316
+ + R + WN+MISGY +NG+ E+ +F K ++ I
Sbjct: 465 KSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTV 524
Query: 317 ---------------GKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
GK + NV V + L+DMY+K G++ A F +T +
Sbjct: 525 ASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKE 584
Query: 354 KDVVMRSAMTVGYGLHGLGE-----------------------------------EGWVL 378
++ V + M +GYG HG+GE EG +
Sbjct: 585 RNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKI 644
Query: 379 FHHIRK-HGIEPRHQHYARVVDLLARAGYSNHAFKFI 414
F +R+ + I+P +HY + D+L R G N A++F+
Sbjct: 645 FEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFV 681
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 46/175 (26%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELE--SDLLI---SLTAVCRYQPNV---------- 134
L + +L E GK H F+I+ G++ E + LI S + + R +
Sbjct: 426 LSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERD 485
Query: 135 -TLRNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------------GKSEY- 170
N+MISGY +NG+ E+ +F K ++ I GK +
Sbjct: 486 QATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHG 545
Query: 171 -------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
NV V + L+DMY+K G++ A F +T +++ V + MI+GYG H
Sbjct: 546 FSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQH 600
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 61/230 (26%)
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHEWSAFGSFDGLLSNEENEYGT 239
G+ LA FD V+ + +I+G+ L +S + + Y +
Sbjct: 53 GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSS 112
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKL---GLELESDLLISLTAVCRYQP------------- 283
L + + L+ GK VH +I+ + + L+++ C P
Sbjct: 113 TLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFD 172
Query: 284 -----NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS------------------- 319
NV WN +IS Y K G EA + F M + S
Sbjct: 173 NMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKK 232
Query: 320 -------------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
EY ++ V + I MYA+ G ++ + FD +++++
Sbjct: 233 ANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNI 282
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 116/490 (23%), Positives = 193/490 (39%), Gaps = 103/490 (21%)
Query: 56 VFLDLYHLWSRTEWSAFGSFDGLLSNEENE-YGTALDCSC-DLEFLEQGKI--------V 105
+FL+++ L + S F S + + +E +G L C C FL+ + +
Sbjct: 80 LFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYM 139
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD--- 162
G K G ++ ++ + NV +ISGYA+N +E + LF + +
Sbjct: 140 KGSNFKDGRKVFDEM---------KERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGT 190
Query: 163 ---------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195
+ K+ + V+ LI++Y KCG+V A +
Sbjct: 191 QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI 250
Query: 196 FFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLSN----EENEYGTALDCSCDLEF 249
FD+T K VV ++MI GY + + A G F + N E+ + + + +L+
Sbjct: 251 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKE 310
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAV---CRYQ-------------PNVTLWNAMIS 293
L + +H ++K G + ++ +L C NV W AMIS
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMIS 370
Query: 294 GYAKNGYAEEAVKLF--------------------------PKWMDYYIGKSEYRNNVIV 327
G+ +N EEAV LF P + + K+ Y + V
Sbjct: 371 GFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV 430
Query: 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
T L+D Y K G V+ A F DKD+V SAM GY G E +F + K GI
Sbjct: 431 GTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGI 490
Query: 388 EPRHQHYARVVDLLARA----GYSNHAFKFIMNMPIELRLSVRRALLS--AWKIPMQQWE 441
+P ++ ++++ A G F + ++ L V ALL+ A K ++ E
Sbjct: 491 KPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAE 550
Query: 442 NMLQTIRGID 451
+ + R D
Sbjct: 551 EVFKRQREKD 560
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 173/475 (36%), Gaps = 124/475 (26%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDG--------LFD 52
M++ +V + + V+K C L L ++H + GF LFD +
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGF----LFDQNIRTALMVAYS 341
Query: 53 RTIVFLDLYHLWSR-------TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 105
+ LD L+ W+A S G L N+ E L + + +
Sbjct: 342 KCTAMLDALRLFKEIGCVGNVVSWTAMIS--GFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399
Query: 106 HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
+ ++ + + + Y+ + T+ A++ Y K G EEA K+F
Sbjct: 400 YSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSG------ 453
Query: 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-LHEWSA-- 222
ID DKD+V SAM+ GY E A
Sbjct: 454 ---------------ID-------------------DKDIVAWSAMLAGYAQTGETEAAI 479
Query: 223 --FGSF-DGLLSNEENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
FG G + E + + L+ C+ + QGK HGF IK L+S L +S +
Sbjct: 480 KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK--SRLDSSLCVSSALL 537
Query: 279 CRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321
Y + ++ WN+MISGYA++G A +A+ +F + +
Sbjct: 538 TMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM--------KK 589
Query: 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFH- 380
R + I ++A C GL EEG F
Sbjct: 590 RKVKMDGVTFIGVFAACTHA----------------------------GLVEEGEKYFDI 621
Query: 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+R I P +H + +VDL +RAG A K I NMP ++ R +L+A ++
Sbjct: 622 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRV 676
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 117/467 (25%), Positives = 176/467 (37%), Gaps = 134/467 (28%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAV---------------CRYQPNVTLRNAMISGYAK 146
G+ +H ++K+GL + + SL ++ C + + NAM++ YA+
Sbjct: 291 GRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAE 350
Query: 147 NGYAEEAVKLF---------PKWMD-------------YYIGKSEY--------RNNVIV 176
N Y A+ LF P Y GKS + ++ +
Sbjct: 351 NDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI 410
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--------GLHEWSAFGSFDG 228
+ L+ +Y+KCG A + F +KD+V ++I G L + D
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 470
Query: 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVC------ 279
L + + + + LE L G VHG MIK GL L LI L + C
Sbjct: 471 SLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMA 530
Query: 280 ------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI----------------- 316
N+ WN+MIS Y++N E ++ LF + I
Sbjct: 531 LKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISST 590
Query: 317 -----GKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
GKS + ++ + LIDMY KCG A F + K ++ + M
Sbjct: 591 ASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMI 650
Query: 364 VGYGLHG-----------------------------------LGEEGWVLFHHIRK-HGI 387
GYG HG EEG +F +++ +GI
Sbjct: 651 YGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGI 710
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
EP +HYA +VDLL RAG A+ FI MPIE S+ LLSA +
Sbjct: 711 EPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASR 757
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 124/559 (22%), Positives = 207/559 (37%), Gaps = 153/559 (27%)
Query: 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIV-------FLD----L 60
T P +LKAC AL +L G +HG + LG + +D ++V FLD +
Sbjct: 62 TFPSLLKACSALTNLSYGKTIHGSVVVLG----WRYDPFIATSLVNMYVKCGFLDYAVQV 117
Query: 61 YHLWSRTE----------WSAFGSFDGLLSNEENEYGT--------------ALDCSCDL 96
+ WS+++ W++ DG + G A S +
Sbjct: 118 FDGWSQSQSGVSARDVTVWNSM--IDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVV 175
Query: 97 EFL--------EQGKIVHGFMIKLGLELESDLLISLTAV----------------CRYQP 132
+ E+GK +HGFM++ L+ +S L +L + +
Sbjct: 176 SVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKS 235
Query: 133 NVTLRNAMISGYAKNGYAEEAVKL------------------------------FPKWMD 162
NV L N MI G+ +G E ++ L F + +
Sbjct: 236 NVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIH 295
Query: 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--W 220
+ K N+ V T L+ MY+KCG V A F +DK + + +AM+ Y ++ +
Sbjct: 296 CDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGY 355
Query: 221 SAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LI 273
SA F + + + C L GK VH + K ++ S + L+
Sbjct: 356 SALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALL 415
Query: 274 SLTAVCRYQPNVTL------------WNAMISGYAKNGYAEEAVKLFPKWMD-------- 313
+L + C P+ L W ++ISG KNG +EA+K+F D
Sbjct: 416 TLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPD 475
Query: 314 ------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+ K+ NV V + LID+Y+KCG ++A F
Sbjct: 476 SDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFT 535
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA----- 404
+++V ++M Y + L E LF+ + GI P V+ ++
Sbjct: 536 SMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLK 595
Query: 405 GYSNHAFKFIMNMPIELRL 423
G S H + + +P + L
Sbjct: 596 GKSLHGYTLRLGIPSDTHL 614
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 136/333 (40%), Gaps = 89/333 (26%)
Query: 188 GSVDLAPMFFDRTLDKDVVMRSAMIVGYG-----LHEWSAFGSF--DGLLSNEENEYGTA 240
S+ A F+ + D+V+ ++M GY L +S F DG+L + + +
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYT-FPSL 135
Query: 241 LDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNV 285
L + LE+G+ +H +KLGL+ LI++ C +P V
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCV 195
Query: 286 TLWNAMISGYAKNGYAEEAVKLFP------------------------------KWMDYY 315
+NAMI+GYA+ EA+ LF KW+ Y
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
K + V VNT LIDM+AKCGS+D A F++ KD SAM V Y HG E+
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKS 315
Query: 376 WVLFHHIR------------------------------------KHGIEPRHQHYARVVD 399
++F +R K GI P +HY +VD
Sbjct: 316 MLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVD 375
Query: 400 LLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
LL+RAG A++FI +PI + R LL+A
Sbjct: 376 LLSRAGNLEDAYEFIDKLPISPTPMLWRILLAA 408
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 70/165 (42%), Gaps = 45/165 (27%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISG 143
LE+G+ +H +KLGL+ LI++ C +P V NAMI+G
Sbjct: 145 LEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITG 204
Query: 144 YAKNGYAEEAVKLFP------------------------------KWMDYYIGKSEYRNN 173
YA+ EA+ LF KW+ Y K +
Sbjct: 205 YARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY 264
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
V VNT LIDM+AKCGS+D A F++ KD SAMIV Y H
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANH 309
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 113/460 (24%), Positives = 176/460 (38%), Gaps = 135/460 (29%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLL----ISLTAVCRY------------QPNVTLRN 138
+L L G+++H M ++G+E S LL + + CR + N R
Sbjct: 95 ELRSLSHGRLLHDRM-RMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRT 153
Query: 139 AMISGYAKNGYAEEAVKLF------------------------PKWMDY------YIGKS 168
MIS YA+ G ++AV LF P+ +D+ ++ ++
Sbjct: 154 TMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRA 213
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFGSF 226
+N + T +++MY KCG + A FD+ K V + ++VGY A F
Sbjct: 214 GLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLF 273
Query: 227 DGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE-------SDLLI-- 273
L++ + + L LE L GK +H + KLGLE E D I
Sbjct: 274 VDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKC 333
Query: 274 -SLTAVCR-----YQPNVTLWNAMISGYAKNGYAEEAVKLFPK----------------- 310
S + CR +PN W+A+ISGY + EEAVK F
Sbjct: 334 SSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSI 393
Query: 311 ------WMDYYIGKSEYRNNVIVN--------TVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
D IG + + + + + LI MY+KCG +D A F+ + D+
Sbjct: 394 FQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDI 453
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHH----------------------------------- 381
V +A G+ +G E LF
Sbjct: 454 VAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDT 513
Query: 382 -IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+RK+ + P HY ++D+ AR+G + A KF+ NMP E
Sbjct: 514 MLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFE 553
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 117/303 (38%), Gaps = 56/303 (18%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGS 74
+VLKAC +L L +G ++H + LG + +D Y S E SA +
Sbjct: 290 VVLKACASLEELNLGKQIHACVAKLG------LESEVSVGTPLVDFYIKCSSFE-SACRA 342
Query: 75 FDGLLSNEENEYGTALDCSCDL-EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 133
F + + + + C + +F E K K + +L S T +Q
Sbjct: 343 FQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSK-----NASILNSFTYTSIFQAC 397
Query: 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193
L + I G +A+K IG S+Y + LI MY+KCG +D A
Sbjct: 398 SVLADCNIGGQVH----ADAIK------RSLIG-SQYG-----ESALITMYSKCGCLDDA 441
Query: 194 PMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGSFDGLLS-----NEENEYGTALDCSCD 246
F+ + D+V +A I G+ + A F+ ++S N CS
Sbjct: 442 NEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACS-H 500
Query: 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ--PNVTLWNAMISGYAKNGYAEEA 304
+EQGK M++ +Y P + ++ MI YA++G +EA
Sbjct: 501 AGLVEQGKHCLDTMLR-----------------KYNVAPTIDHYDCMIDIYARSGLLDEA 543
Query: 305 VKL 307
+K
Sbjct: 544 LKF 546
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 121/518 (23%), Positives = 192/518 (37%), Gaps = 136/518 (26%)
Query: 6 VAPNGCTPPLVLKACVALP---SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYH 62
V P+ T V+ AC LP L+MG +VH G L ++ + L ++ L
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTL---VAMYGKLGK 251
Query: 63 LWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 122
L S GSF G + + T L C E L + M+ G+E + +
Sbjct: 252 LASSK--VLLGSFGG---RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTIS 306
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
S+ C + + + + KNG +E N V + L+D
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDE--------------------NSFVGSALVD 346
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--------WSAFGSFDGLLSNEE 234
MY C V FD D+ + + +AMI GY +E + GLL+N
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP----------- 283
G C F + + +HGF++K GL+ D + T + Y
Sbjct: 407 TMAGVVPACVRSGAF-SRKEAIHGFVVKRGLD--RDRFVQNTLMDMYSRLGKIDIAMRIF 463
Query: 284 ------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY----------------------- 314
++ WN MI+GY + + E+A+ L K +
Sbjct: 464 GKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTI 523
Query: 315 ------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
Y K+ +V V + L+DMYAKCG + ++ FD+ K+V
Sbjct: 524 LPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 583
Query: 357 VMRSAMTVGYGLHGLGEE-----------------------------------GWVLFHH 381
+ + + + YG+HG G+E G +F+
Sbjct: 584 ITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYV 643
Query: 382 IR-KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
++ +G+EP HYA VVDLL RAG A++ + MP
Sbjct: 644 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 681
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 92/438 (21%), Positives = 170/438 (38%), Gaps = 82/438 (18%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDL 60
M V + P+ P +LKA L + +G ++H ++ G+ V D V L
Sbjct: 88 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGV--------DSVTVANTL 139
Query: 61 YHLWSRTE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118
+L+ + + + FD + + + + + C E E M+ +E S
Sbjct: 140 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 199
Query: 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178
L+S+ C N+ + ++ G + Y +L N+ I+NT
Sbjct: 200 FTLVSVVTAC---SNLPMPEGLMMGKQVHAYGLRKGEL---------------NSFIINT 241
Query: 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVV----MRSAMIVGYGLHEWSAFGSFDGLLSNEE 234
L+ MY K G + + + +D+V + S++ L E + L E
Sbjct: 242 -LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 235 NEY--GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR-------- 280
+E+ + L LE L GK +H + +K G E+ L+ + C+
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 281 ----YQPNVTLWNAMISGYAKNGYAEEAVKLF---------------------------- 308
+ + LWNAMI+GY++N + +EA+ LF
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420
Query: 309 ---PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365
+ + ++ K + V L+DMY++ G +D+A F + D+D+V + M G
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480
Query: 366 YGLHGLGEEGWVLFHHIR 383
Y E+ +L H ++
Sbjct: 481 YVFSEHHEDALLLLHKMQ 498
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 123/449 (27%), Positives = 191/449 (42%), Gaps = 97/449 (21%)
Query: 15 LVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSR--TEWSAF 72
+KACV L L G +HG +GL V L ++++ T SA
Sbjct: 114 FAIKACVGLGLLENGILIHGLAMK---------NGLDKDDYVAPSLVEMYAQLGTMESAQ 164
Query: 73 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGF--MIKLGLELESDLLISLTAVCRY 130
FD + +G + L++ + ++ F M GL L++ LI L C
Sbjct: 165 KVFDEIPVRNSVLWGVLMKGY--LKYSKDPEVFRLFCLMRDTGLALDALTLICLVKAC-- 220
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ +G K G V + ++D +S+Y + +IDMY KC +
Sbjct: 221 -------GNVFAG--KVGKCVHGVSIRRSFID----QSDY-----LQASIIDMYVKCRLL 262
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFGSF-----DGLLSNEENEYGTALDC 243
D A F+ ++D++VVM + +I G+ E + AF F + +L N+ + C
Sbjct: 263 DNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSC 322
Query: 244 SCDLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------------QPNVTLW 288
S L L GK VHG+MI+ G+E+++ I + A C + NV W
Sbjct: 323 S-SLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISW 381
Query: 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV-LIDMYAKCGSVDLAPMF 347
++MI+ + NG EEA+ F K KS+ NV+ N+V + + + C
Sbjct: 382 SSMINAFGINGLFEEALDCFHKM------KSQ---NVVPNSVTFVSLLSACSH------- 425
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGY 406
G +EGW F + R +G+ P +HYA +VDLL RAG
Sbjct: 426 ---------------------SGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGE 464
Query: 407 SNHAFKFIMNMPIELRLSVRRALLSAWKI 435
A FI NMP++ S ALLSA +I
Sbjct: 465 IGEAKSFIDNMPVKPMASAWGALLSACRI 493
>sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370
OS=Arabidopsis thaliana GN=PCMP-E99 PE=3 SV=1
Length = 729
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 143/565 (25%), Positives = 217/565 (38%), Gaps = 160/565 (28%)
Query: 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLDLYHLWSR 66
P+ T P +LKAC +L L G +H Q+ GF Y+ L + F L H
Sbjct: 44 PDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKV 103
Query: 67 TE---------WSA-FGSFD--GL------LSNEENEYGTALDCSCDLEFLE------QG 102
E W+A G + G+ L NE G LE L Q
Sbjct: 104 FEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQL 163
Query: 103 KIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISGYAKN 147
+ +H F + G + + + +++L C + Q ++ N MISGYA
Sbjct: 164 QCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASV 223
Query: 148 GYAEEAVKLF------------------------------PKWMDYYIGKSEYRNNVIVN 177
G E +KL + + I K+ + ++ +
Sbjct: 224 GNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLK 283
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGLL---S 231
T LI MY KCG + + + +KDVV + MI G G E A F +L S
Sbjct: 284 TALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAE-KALIVFSEMLQSGS 342
Query: 232 NEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELES---DLLISLTAVCRY------ 281
+ +E ++ SC L + G VHG++++ G L++ + LI++ A C +
Sbjct: 343 DLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLV 402
Query: 282 ------QPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------------- 309
+ ++ WNA+ISGYA+N +A+ LF
Sbjct: 403 IFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAG 462
Query: 310 -----KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364
K + + +S R +V+T L+DMY+KCG ++ A FD KDVV +
Sbjct: 463 ALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIA 522
Query: 365 GYGLHGLG-----------------------------------EEGWVLFHH-IRKHGIE 388
GYG HG G ++G +F +R G+E
Sbjct: 523 GYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVE 582
Query: 389 PRHQHYARVVDLLARAGYSNHAFKF 413
P H+H A VVDLL RA AFKF
Sbjct: 583 PNHEHLACVVDLLCRAKRIEDAFKF 607
>sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2
SV=1
Length = 572
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 181/465 (38%), Gaps = 134/465 (28%)
Query: 105 VHGFMIKLGLELES---DLLISLTAV--CRY---------QPNVTLRNAMISGYAKNGYA 150
+HG+M+K GL+ + L++ ++V RY N+ + N MI GY+ +
Sbjct: 47 IHGYMVKTGLDKDDFAVSKLLAFSSVLDIRYASSIFEHVSNTNLFMFNTMIRGYSISDEP 106
Query: 151 EEAVKLFPKW------MDYY----------------IGKSEY----RNNVIVNT----VL 180
E A +F + +D + IG+ + R+ +V T L
Sbjct: 107 ERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFTDLRNAL 166
Query: 181 IDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHEWSAFG-SFDGLLSNEENEYG 238
I Y CG + A FD D V S ++ GY A ++ E
Sbjct: 167 IHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSKKALALDLFRIMRKSEVVVN 226
Query: 239 TA-----LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV--------------- 278
+ L DL L + H IK+GL+L+ L+ +L +
Sbjct: 227 VSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFD 286
Query: 279 CRYQPNVTLWNAMISGYAKNGYAEEAV---------KLFPKWMDY-------------YI 316
C + +V WN MI YAK G EE V K+ P + ++
Sbjct: 287 CAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFV 346
Query: 317 GKS------EYRN--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
G++ E R + I+ T L+DMYAK G ++ A F+R DKDV +AM GYG
Sbjct: 347 GRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVKSWTAMISGYGA 406
Query: 369 HGLGEEGWVLFHHIRK--------------------HG------------------IEPR 390
HGL E LF+ + + HG P+
Sbjct: 407 HGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVMEGIRCFKRMVEAYSFTPK 466
Query: 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+HY VVDLL RAG A++ I N+PI + RALL+A ++
Sbjct: 467 VEHYGCVVDLLGRAGQLEEAYELIRNLPITSDSTAWRALLAACRV 511
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 45/169 (26%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---------------CRYQPNVTLRNA 139
DL L + H IK+GL+L+ L+ +L + C + +V N
Sbjct: 239 DLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNC 298
Query: 140 MISGYAKNGYAEEAV---------KLFPKWMDY-------------YIGKS------EYR 171
MI YAK G EE V K+ P + ++G++ E R
Sbjct: 299 MIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVADLLEEER 358
Query: 172 N--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
+ I+ T L+DMYAK G ++ A F+R DKDV +AMI GYG H
Sbjct: 359 IALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVKSWTAMISGYGAH 407
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 135/593 (22%), Positives = 226/593 (38%), Gaps = 165/593 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG----------FLVCYLFDG------ 49
V+P+ T P ++KACVAL + + + SLG + YL G
Sbjct: 134 VSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPS 193
Query: 50 -LFDRTI--------VFLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCS---CDLE 97
LFDR + V L+ Y + S F + ++ + DC C +
Sbjct: 194 KLFDRVLQKDCVIWNVMLNGYAKCGALD-SVIKGFSVMRMDQISPNAVTFDCVLSVCASK 252
Query: 98 FL-EQGKIVHGFMIKLGLELESDL---LISLTAVC-RY-----------QPNVTLRNAMI 141
L + G +HG ++ G++ E + L+S+ + C R+ + + N MI
Sbjct: 253 LLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMI 312
Query: 142 SGYAKNGYAEEAVKLF------------------------------PKWMDYYIGKSEYR 171
SGY ++G EE++ F K + YI +
Sbjct: 313 SGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSIS 372
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGL-- 229
++ + + LID Y KC V +A F + DVV+ +AMI GY LH S +
Sbjct: 373 LDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGY-LHNGLYIDSLEMFRW 431
Query: 230 -----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVC-- 279
+S E + L L L+ G+ +HGF+IK G + ++ +I + A C
Sbjct: 432 LVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 491
Query: 280 ----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFP-------------------- 309
+ ++ WN+MI+ A++ A+ +F
Sbjct: 492 MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSA 551
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
K + ++ K ++V + LIDMYAKCG++ A F +K++V
Sbjct: 552 CANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSW 611
Query: 360 SAMTVGYGLHGLGEEGWVLFHHI------------------------------------- 382
+++ G HG ++ LFH +
Sbjct: 612 NSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMT 671
Query: 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
+GI+P+ +HYA VVDL RAG A++ + +MP V LL A ++
Sbjct: 672 EDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRL 724
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 104/454 (22%), Positives = 174/454 (38%), Gaps = 157/454 (34%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKW------MDYY------------------------IGK 167
N+M+SG+A++ EEA+ F ++ Y I K
Sbjct: 121 NSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAK 180
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH--EWSAFGS 225
S + ++V + + L+DMY+KCG+V+ A FD D++VV +++I + + A
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDV 240
Query: 226 FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281
F +L + +E + + L ++ G+ VHG ++K +L +D+++S V Y
Sbjct: 241 FQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK-NDKLRNDIILSNAFVDMY 299
Query: 282 ------------------------------------------------QPNVTLWNAMIS 293
+ NV WNA+I+
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 294 GYAKNGYAEEAVKLF----------------------PKWMDYYIG-------------- 317
GY +NG EEA+ LF + ++G
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKF 419
Query: 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377
+S +++ V LIDMY KCG V+ + F + +++D V +AM +G+ +G G E
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479
Query: 378 LFH----------HI--------------------------RKHGIEPRHQHYARVVDLL 401
LF HI R G+ P HY +VDLL
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLL 539
Query: 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
RAG+ A I MP++ + +LL+A K+
Sbjct: 540 GRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKV 573
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 83/279 (29%)
Query: 156 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215
++ +++ + KS + N + + LID Y+KCGS++ FD+ +++ ++++ G
Sbjct: 37 IYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTG- 95
Query: 216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275
+ KLG E+D L
Sbjct: 96 --------------------------------------------LTKLGFLDEADSLF-- 109
Query: 276 TAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKLFPKW------MDYY------------ 315
R P + WN+M+SG+A++ EEA+ F ++ Y
Sbjct: 110 ----RSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGL 165
Query: 316 ------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
I KS + ++V + + L+DMY+KCG+V+ A FD D++VV +++
Sbjct: 166 NDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLI 225
Query: 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA 402
+ +G E +F + + +EP A V+ A
Sbjct: 226 TCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 118/520 (22%), Positives = 212/520 (40%), Gaps = 119/520 (22%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-CYLFDGLFDRTIVFLD 59
M A V + T P V+K+ + SL G ++H + LGF+ Y+ + L +++
Sbjct: 121 MVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLIS---LYMK 177
Query: 60 LYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 119
L W A F+ + + + + ++ G++ LG S
Sbjct: 178 L-----GCAWDAEKVFEEMP---------------ERDIVSWNSMISGYL-ALGDGFSSL 216
Query: 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 179
+L C ++P+ R + +S + K+ + + + +V+V T
Sbjct: 217 MLFKEMLKCGFKPD---RFSTMSALGACSHVYSP-KMGKEIHCHAVRSRIETGDVMVMTS 272
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEY 237
++DMY+K G V A F+ + +++V + MI Y + AF F + +E+N
Sbjct: 273 ILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKM--SEQNGL 330
Query: 238 GTALDCSCDL---EFLEQGKIVHGFMIKLG----LELESDLLISLTAVC----------- 279
+ S +L + +G+ +HG+ ++ G + LE+ LI + C
Sbjct: 331 QPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLET-ALIDMYGECGQLKSAEVIFD 389
Query: 280 -RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY------------------------ 314
+ NV WN++I+ Y +NG A++LF + D
Sbjct: 390 RMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSE 449
Query: 315 ------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
YI KS Y +N I+ L+ MYA CG ++ A F+ L KDVV +++ + Y +
Sbjct: 450 GREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAV 509
Query: 369 HGLG-----------------------------------EEGWVLFHHI-RKHGIEPRHQ 392
HG G +EGW F + R++GI+P +
Sbjct: 510 HGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIE 569
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
HY ++DL+ R G + A +F+ MP + +LL+A
Sbjct: 570 HYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNA 609
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 162/387 (41%), Gaps = 104/387 (26%)
Query: 153 AVKLFPKWMDYYIGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204
A+K D + GK Y++++ V++ LI MY+ CG ++ A FD ++
Sbjct: 82 AIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRN 141
Query: 205 VVMRSAMIVGYGLH--EWSAFGSFDGLLSNEENE--------YGTALDCSCDLEFLEQG- 253
+V ++MI GY L+ A F LL +E ++ G S +G
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201
Query: 254 -KIVHGFMIKLGLELESDLLISL-----------TAVCR------YQPNVTLWNAMISGY 295
+ +H F+IK G + + +L AV R + +N+++S Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261
Query: 296 AKNGYAEEAVKLFPKWMD-----------------------YYIGKSEY--------RNN 324
A++G + EA ++F + + IGK + ++
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDD 321
Query: 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG-------------- 370
VIV T +IDMY KCG V+ A FDR +K+V +AM GYG+HG
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381
Query: 371 ---------------------LGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAGYSN 408
L EGW F+ ++ + G+EP +HY +VDLL RAG+
Sbjct: 382 SGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQ 441
Query: 409 HAFKFIMNMPIELRLSVRRALLSAWKI 435
A+ I M ++ + +LL+A +I
Sbjct: 442 KAYDLIQRMKMKPDSIIWSSLLAACRI 468
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 30/128 (23%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAV---------KLFP-------------KWMDYYIGKS 319
+ +V WN++I+ A++G + EA+ L+P D + GK
Sbjct: 38 KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97
Query: 320 E--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGL 371
Y++++ V++ LI MY+ CG ++ A FD +++V ++M GY L+G
Sbjct: 98 THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGN 157
Query: 372 GEEGWVLF 379
+ LF
Sbjct: 158 ALDAVSLF 165
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 119/322 (36%), Gaps = 86/322 (26%)
Query: 16 VLKACVALPSLLMGPRVHGQIFSLGF-----------------------LVCYLFDGLFD 52
V+ AC +P+ + +H + GF + +FD + D
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248
Query: 53 R-TIVFLDLYHLWSRTEWS--AFGSFDGLLSNEENEY-----GTALDCSCDLEFLEQGKI 104
+ + + + +++++ S AF F L+ N+ + T L L GK
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308
Query: 105 VHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRNAMISGYAKN 147
+H +I++GLE D+++ + + Y NV AMI+GY +
Sbjct: 309 IHDQVIRMGLE--DDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMH 366
Query: 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207
G+A +A++LFP +D S R N I + + A C
Sbjct: 367 GHAAKALELFPAMID-----SGVRPNYI---TFVSVLAACSH------------------ 400
Query: 208 RSAMIVGYGLHEWSAFGSFDGLLSNEE--NEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265
G + W F + G E YG +D FL++ + + ++ +
Sbjct: 401 -----AGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA---YDLIQRMKM 452
Query: 266 ELESDLLISLTAVCRYQPNVTL 287
+ +S + SL A CR NV L
Sbjct: 453 KPDSIIWSSLLAACRIHKNVEL 474
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 148/364 (40%), Gaps = 95/364 (26%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD--VVMRSAMIVGYGLHEWS 221
++ K V T LI MY KCG V A F+ V +A+I GY +
Sbjct: 78 HVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKV 137
Query: 222 AFGSFDGLLSNEENEYGTALDCSCDL---------EFLEQGKIVHGFMIKLGLELESDLL 272
++ + E G ++D L E+L G+ +HG +K GL+ E +L
Sbjct: 138 TDAAY---MFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVL 194
Query: 273 ISLTAVCRYQPNV---------------TLWNAMISGYAKNGYAEEAVKLF--------- 308
S + +V WNA+ISGY++NG A + ++L+
Sbjct: 195 NSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVC 254
Query: 309 -----------------PKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMF 347
K + + +GK N NV V+ I MYA+CG++ A
Sbjct: 255 PDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAV 314
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-------------------- 387
FD K +V +AM YG+HG+GE G +LF + K GI
Sbjct: 315 FDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLT 374
Query: 388 ----------------EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
EP +HY+ +VDLL RAG + A +FI +MP+E +V ALL
Sbjct: 375 DKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLG 434
Query: 432 AWKI 435
A KI
Sbjct: 435 ACKI 438
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 77/294 (26%)
Query: 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLG-----FLVCYLFDGLFDRTIVFLDLY 61
+P+ + P +LK+C +L + G ++H + G F++ L ++ + + D
Sbjct: 50 SPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALIS-MYCKCGLVADAR 108
Query: 62 HLWSRTEWSAFGS--FDGLLS---------------NEENEYGTALDCSCDL-------- 96
++ S+ S ++ L+S E G ++D L
Sbjct: 109 KVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTV 168
Query: 97 -EFLEQGKIVHGFMIKLGLELESDLL---ISLTAVC-------RYQPNVTLR-----NAM 140
E+L G+ +HG +K GL+ E +L I++ C R + ++ NA+
Sbjct: 169 PEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAV 228
Query: 141 ISGYAKNGYAEEAVKLF--------------------------PKWMDYYIGKSEYRN-- 172
ISGY++NG A + ++L+ K + + +GK N
Sbjct: 229 ISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGF 288
Query: 173 --NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224
NV V+ I MYA+CG++ A FD K +V +AMI YG+H G
Sbjct: 289 VPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIG 342
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 162/423 (38%), Gaps = 114/423 (26%)
Query: 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-----------------QPNVTLRN 138
L F++ G +HGF+ K GL SDL + + Y + + N
Sbjct: 134 LGFVKGGMQIHGFLKKTGLW--SDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYN 191
Query: 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198
+MI GY K G A +LF + E +N + N+++ VD+A F
Sbjct: 192 SMIDGYVKCGLIVSARELFD------LMPMEMKNLISWNSMISGYAQTSDGVDIASKLFA 245
Query: 199 RTLDKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIV 256
+KD++ ++MI GY H A G FD + + + T +D L F+ K +
Sbjct: 246 DMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTL 305
Query: 257 HGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW----- 311
M +V +N+M++GY +N Y EA+++F
Sbjct: 306 FDQM--------------------PHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESH 345
Query: 312 --------------------------MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345
M YI + ++ + LIDMY+KCGS+ A
Sbjct: 346 LLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAM 405
Query: 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------------------- 382
+ F+ +K + +AM G +HGLGE + + I
Sbjct: 406 LVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSG 465
Query: 383 -------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRAL 429
RKH IEPR QHY +VD+L+R+G A I MP+E + R
Sbjct: 466 LVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTF 525
Query: 430 LSA 432
L+A
Sbjct: 526 LTA 528
>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2
SV=2
Length = 775
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 130/594 (21%), Positives = 221/594 (37%), Gaps = 189/594 (31%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFS--------------------LG 40
M ++ +P+ T P+V+ AC L +G VHG + G
Sbjct: 116 MLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCG 175
Query: 41 FL--VCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGLLSNEENEYG----------- 87
FL C +FD + DR +V W+A G + N E+E G
Sbjct: 176 FLQDACLVFDEMPDRDVV-----------AWTAI--ISGHVQNGESEGGLGYLCKMHSAG 222
Query: 88 --------TALDC---SC-DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-- 133
L+C +C +L L++G+ +HGF +K GL + S+ + N
Sbjct: 223 SDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPS 282
Query: 134 ---VTLR----------NAMISGYAKNGYAEEAVKLF----------------------- 157
++ R ++I+ A++G EE+ +F
Sbjct: 283 EAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELG 342
Query: 158 -------PKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRS 209
K ++ + + + V L+ MY K + +A F R ++ + +
Sbjct: 343 KMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWN 402
Query: 210 AMIVGYGLHEWSA-----FGSFDGLLSNEENEYGTALDCSCD-LEFLEQGKIVHGFMIKL 263
M+ GYG + F L ++ T++ SC + + GK +H +++K
Sbjct: 403 TMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKT 462
Query: 264 GLELE--------------SDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
L+L DL ++ C NV WNAMI+ Y +E+A+ LF
Sbjct: 463 SLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFD 522
Query: 310 KWMD------------------------------YYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ + YI ++E+ N+ ++ LIDMYAKCG
Sbjct: 523 RMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCG 582
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG----------------------------- 370
++ + FD KD V + M GYG+HG
Sbjct: 583 HLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLS 642
Query: 371 ------LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
L E+G LF + ++ ++P +HY+ +VDLL+R+G A +M+MP
Sbjct: 643 ACTHAGLVEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMP 696
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 116/288 (40%), Gaps = 73/288 (25%)
Query: 102 GKIVHGFMIKLGLELE--------------SDLLISLTAVCRYQPNVTLRNAMISGYAKN 147
GK +H +++K L+L DL ++ C NV NAMI+ Y
Sbjct: 452 GKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHC 511
Query: 148 GYAEEAVKLFPKWMD------------------------------YYIGKSEYRNNVIVN 177
+E+A+ LF + + YI ++E+ N+ ++
Sbjct: 512 EQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLS 571
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEEN 235
LIDMYAKCG ++ + FD KD V + MI GYG+H SA FD + ++
Sbjct: 572 AALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVK 631
Query: 236 EYGT---ALDCSCD-LEFLEQGKIV----HGFMIKLGLELES---DLLI---------SL 275
G AL +C +EQGK + H + +K L+ S DLL S
Sbjct: 632 PTGPTFLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAEST 691
Query: 276 TAVCRYQPNVTLWNAMISGYAKNG-------YAEEAVKLFPKWMDYYI 316
+ P+ +W ++S +G AE AV P+ YYI
Sbjct: 692 VMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYI 739
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 106/273 (38%), Gaps = 57/273 (20%)
Query: 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHEWSAFGSFDGL 229
N+ V + LI YA G +L+ F +D+ + +++I + G + S F L
Sbjct: 58 NIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSLCFFFSML 117
Query: 230 LSNEENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--- 283
LS + ++ TA + +L + G VHG ++K G + + + + V Y
Sbjct: 118 LSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHG-GFDRNTAVGASFVYFYSKCGF 176
Query: 284 --------------NVTLWNAMISGYAKNGYAEEAV--------------KLFPKWMDY- 314
+V W A+ISG+ +NG +E + K P+ ++
Sbjct: 177 LQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECG 236
Query: 315 ------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 356
+ K+ ++ V + + Y+K G+ A + F D+D+
Sbjct: 237 FQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDM 296
Query: 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+++ G EE + +F ++ G+ P
Sbjct: 297 FSWTSIIASLARSGDMEESFDMFWEMQNKGMHP 329
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 103/438 (23%), Positives = 164/438 (37%), Gaps = 144/438 (32%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIG------------------------------K 167
NAMI+GY++ + +A+ LF + M +G K
Sbjct: 351 NAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIK 410
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS-- 225
S +V V IDMY KC ++ A FD +D V +A+I HE + G
Sbjct: 411 SSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAA---HEQNGKGYET 467
Query: 226 ---FDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISL 275
F +L + +E +G+ L +C L G +H ++K G+ S + LI +
Sbjct: 468 LFLFVSMLRSRIEPDEFTFGSILK-ACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 526
Query: 276 TAVC--------------------------------RYQPNVTLWNAMISGYAKNGYAEE 303
+ C R Q WN++ISGY +E+
Sbjct: 527 YSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSED 586
Query: 304 AVKLFPKWMDYYIG------------------------------KSEYRNNVIVNTVLID 333
A LF + M+ I K E +++V + + L+D
Sbjct: 587 AQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVD 646
Query: 334 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI----------- 382
MY+KCG + + + F+++L +D V +AM GY HG GEE LF +
Sbjct: 647 MYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVT 706
Query: 383 -------------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417
R +G++P+ HY+ +VD+L ++G A + I M
Sbjct: 707 FISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREM 766
Query: 418 PIELRLSVRRALLSAWKI 435
P E + R LL I
Sbjct: 767 PFEADDVIWRTLLGVCTI 784
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 128/313 (40%), Gaps = 75/313 (23%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFG 224
KS++ + IV T +DMYAKC ++ A + FD + + + +AMI GY H + A
Sbjct: 309 KSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALL 368
Query: 225 SFDGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLT 276
F L+S +E + G C+ ++ L +G ++G IK L L+ ++ I +
Sbjct: 369 LFHRLMSSGLGFDEISLSGVFRACAL-VKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMY 427
Query: 277 AVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-- 322
C+ + + WNA+I+ + +NG E + LF + I E+
Sbjct: 428 GKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFG 487
Query: 323 ---------------------------NNVIVNTVLIDMYAKCGSVDLA----PMFFDRT 351
+N V LIDMY+KCG ++ A FF R
Sbjct: 488 SILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRA 547
Query: 352 ----------------LDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA 395
L + V +++ GY + E+ +LF + + GI P YA
Sbjct: 548 NVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYA 607
Query: 396 RVVDL---LARAG 405
V+D LA AG
Sbjct: 608 TVLDTCANLASAG 620
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 127/341 (37%), Gaps = 78/341 (22%)
Query: 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158
LE GK H MI G ++P + N ++ Y + A +F
Sbjct: 64 LELGKQAHAHMIISG----------------FRPTTFVLNCLLQVYTNSRDFVSASMVFD 107
Query: 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K R+ V N +I+ Y+K + A FF+ +DVV ++M+ GY L
Sbjct: 108 KM--------PLRDVVSWNK-MINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGY-LQ 157
Query: 219 EWSAFGSFDGL-------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE--- 268
+ S + + + + L LE G +HG ++++G + +
Sbjct: 158 NGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVA 217
Query: 269 -SDLLISLTAVCRY-----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316
S LL R+ + N W+A+I+G +N A+K F +
Sbjct: 218 ASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNA 277
Query: 317 G------------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346
G KS++ + IV T +DMYAKC ++ A +
Sbjct: 278 GVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQI 337
Query: 347 FFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
FD + + + +AM GY G + +LFH + G+
Sbjct: 338 LFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 378
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 30/120 (25%)
Query: 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG---------------------- 166
R Q N++ISGY +E+A LF + M+ I
Sbjct: 563 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 622
Query: 167 --------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218
K E +++V + + L+DMY+KCG + + + F+++L +D V +AMI GY H
Sbjct: 623 KQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 682
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------NV 134
Y T LD +L GK +H +IK EL+SD+ I T V Y
Sbjct: 606 YATVLDTCANLASAGLGKQIHAQVIKK--ELQSDVYICSTLVDMYSKCGDLHDSRLMFEK 663
Query: 135 TLR------NAMISGYAKNGYAEEAVKLFPK 159
+LR NAMI GYA +G EEA++LF +
Sbjct: 664 SLRRDFVTWNAMICGYAHHGKGEEAIQLFER 694
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 188/497 (37%), Gaps = 140/497 (28%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY------ 130
GL+ N+ CS + +F+ G++ GF++K G ESD+ + + + +
Sbjct: 161 GLVPNDYCYTAVIRACS-NSDFVGVGRVTLGFLMKTG-HFESDVCVGCSLIDMFVKGENS 218
Query: 131 ------------QPNVTLRNAMISGYAKNGYAEEAVKLF--------------------- 157
+ NV MI+ + G+ EA++ F
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278
Query: 158 -PKWMDYYIGKSEY----RNNVI--VNTVLIDMYAKC---GSVDLAPMFFDRTLDKDVVM 207
+ + +GK + R+ ++ V L+DMYAKC GSVD FDR D V+
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS 338
Query: 208 RSAMIVGYGLH---EWSAFGSFDGLLSNEENE-----YGTALDCSCDLEFLEQGKIVHGF 259
+A+I GY + A F +++ E + +A +L GK V G
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398
Query: 260 MIKLGLELESDLLISLTAV---------------CRYQPNVTLWNAMISGYAKNGYAEEA 304
K GL S + S+ ++ + N+ +N + G +N E+A
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQA 458
Query: 305 VKLFPKWMDYYIGKSEY------------------------------RNNVIVNTVLIDM 334
KL + + +G S + N V LI M
Sbjct: 459 FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISM 518
Query: 335 YAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG---------------------- 372
Y+KCGS+D A F+ +++V+ ++M G+ HG
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578
Query: 373 -------------EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418
EGW F+ + H I+P+ +HYA +VDLL RAG AF+FI MP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638
Query: 419 IELRLSVRRALLSAWKI 435
+ + V R L A ++
Sbjct: 639 FQADVLVWRTFLGACRV 655
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 34/219 (15%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWS 65
V PN T KAC L +G +V GQ F GL + V + ++
Sbjct: 369 VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK---------RGLASNSSVANSVISMFV 419
Query: 66 RTEW--SAFGSFDGLLSNEENEYGTALDCSC-DLEFLEQGKIVHGFMIKLGLELESDLLI 122
+++ A +F+ L Y T LD +C +L F + K++ E +L +
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT-------ERELGV 472
Query: 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182
S +++SG A G + ++ + + K N V LI
Sbjct: 473 SAFTFA----------SLLSGVANVGSIRKGEQIHSQ-----VVKLGLSCNQPVCNALIS 517
Query: 183 MYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS 221
MY+KCGS+D A F+ +++V+ ++MI G+ H ++
Sbjct: 518 MYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFA 556
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 77/286 (26%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNV--------TLR----------NAMISG 143
GK+VH +I+ +E +S L SL ++ + T+R +AM++
Sbjct: 81 GKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMAC 140
Query: 144 YAKNGYAEEAVKLFPKWMD-------------------------------YYIGKSEYRN 172
Y NG +A+K+F ++++ + + + +
Sbjct: 141 YGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFES 200
Query: 173 NVIVNTVLIDMYAKC-GSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHEWSAFGSF 226
+V V LIDM+ K S + A FD+ + +VV + MI +G+ F
Sbjct: 201 DVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFF--L 258
Query: 227 DGLLSNEENE---YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-LISLTAVCRY- 281
D +LS E++ + +LE L GK +H + I+ GL + + L+ + A C
Sbjct: 259 DMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSAD 318
Query: 282 --------------QPNVTLWNAMISGYAKN-GYAEEAVKLFPKWM 312
+V W A+I+GY KN A EA+ LF + +
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMI 364
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 253 GKIVHGFMIKLGLELESDL---LISL--------------TAVCRY-QPNVTLWNAMISG 294
GK+VH +I+ +E +S L LISL + R+ + +V W+AM++
Sbjct: 81 GKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMAC 140
Query: 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354
Y NG +A+K+F ++++ + ++Y ++ + G V L + +
Sbjct: 141 YGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFES 200
Query: 355 DVVM 358
DV +
Sbjct: 201 DVCV 204
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 149/373 (39%), Gaps = 94/373 (25%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWS--AFG 224
KSE N I L DMYA+CG ++ A FD+ D + +I G + ++ A
Sbjct: 298 KSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVS 357
Query: 225 SFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTA 277
F + S+ + + L L QG +H ++IK G + + L+++
Sbjct: 358 VFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYT 417
Query: 278 VC-------------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM------DYYIGK 318
C R + WN +++ ++ E ++LF + D+
Sbjct: 418 FCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMG 477
Query: 319 SEYRNNVIVNTV------------------------LIDMYAKCGSVDLAPMFFDRTLDK 354
+ R V ++++ LIDMYAKCGS+ A FD ++
Sbjct: 478 NLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNR 537
Query: 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----------------------- 391
DVV S + VGY G GEE +LF ++ GIEP H
Sbjct: 538 DVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLY 597
Query: 392 -------------QHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK---- 434
+H + VVDLLARAG N A +FI M +E + V + LLSA K
Sbjct: 598 ATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGN 657
Query: 435 --IPMQQWENMLQ 445
+ + EN+L+
Sbjct: 658 VHLAQKAAENILK 670
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 110/280 (39%), Gaps = 56/280 (20%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSA- 222
+I S + + I+N ++ MY KCGS+ A FD ++++V +++I GY + A
Sbjct: 92 HILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAE 151
Query: 223 -----FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277
L ++ +G+ + + GK +H +IK LE S L+
Sbjct: 152 AIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIK--LESSSHLIAQNAL 209
Query: 278 VCRY-----------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWM-------- 312
+ Y ++ W+++I+G+++ G+ EA+ + +
Sbjct: 210 IAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPN 269
Query: 313 DYYIG-----------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349
+Y G KSE N I L DMYA+CG ++ A FD
Sbjct: 270 EYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFD 329
Query: 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389
+ D + + G +G +E +F +R G P
Sbjct: 330 QIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIP 369
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 120/290 (41%), Gaps = 68/290 (23%)
Query: 89 ALDCSCDL-EFLEQGKIVHGFMIKLGLELESDL---LISLTAVC----------RYQP-- 132
+L C+C L QG+ +H ++ + ++ L ++S+ C + P
Sbjct: 72 SLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPER 131
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWM----------------------DYYIGKS-- 168
N+ ++I+GY++NG EA++L+ K + D +GK
Sbjct: 132 NLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLH 191
Query: 169 ------EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEW 220
E +++I LI MY + + A F KD++ S++I G+ E+
Sbjct: 192 AQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEF 251
Query: 221 SAFGSFDGLLS---NEENEY--GTALDCSCDLEFLEQGKIVHGFMIK---LGLELESDLL 272
A +LS NEY G++L L + G +HG IK G + L
Sbjct: 252 EALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSL 311
Query: 273 ISLTAVCRY------------QPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
+ A C + +P+ WN +I+G A NGYA+EAV +F +
Sbjct: 312 CDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQ 361
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374
+I S + + I+N ++ MY KCGS+ A FD ++++V +++ GY +G G E
Sbjct: 92 HILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAE 151
Query: 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405
L+ + + + P + ++ A +
Sbjct: 152 AIRLYLKMLQEDLVPDQFAFGSIIKACASSS 182
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 34/211 (16%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCY-LFDGLFDRTIVFLD 59
M V+ P+ T +L+ CV + SL +G +VH CY L GL +
Sbjct: 464 MLVSECEPDHITMGNLLRGCVEISSLKLGSQVH----------CYSLKTGLAPEQFIKNG 513
Query: 60 LYHLWSR--TEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 117
L ++++ + A FD + + + + T + F E+ I+ M G+E
Sbjct: 514 LIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIE-- 571
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177
PN +++ + G EE +KL+ M G S + +
Sbjct: 572 --------------PNHVTFVGVLTACSHVGLVEEGLKLYAT-MQTEHGISPTKEHC--- 613
Query: 178 TVLIDMYAKCGSVDLAPMFFDR-TLDKDVVM 207
+ ++D+ A+ G ++ A F D L+ DVV+
Sbjct: 614 SCVVDLLARAGRLNEAERFIDEMKLEPDVVV 644
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 140/590 (23%), Positives = 221/590 (37%), Gaps = 163/590 (27%)
Query: 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----------LVCYLFDGLFDRTI 55
V+P+ T P V+KAC L MG V+ QI +GF + Y GL R
Sbjct: 102 VSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRAR 161
Query: 56 VFLDLYHLWSRTEW-------SAFGSFDGLLS-----------NEENEYGTALDCSCDLE 97
D + W S+ G ++ L + + L +L
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLL 221
Query: 98 FLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQPNVTLR--------------NAMIS 142
++QG+ +HGF +K G+ + L A+ +++ R N MI
Sbjct: 222 VVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMIC 281
Query: 143 GYAKNGYAEEAVKLF-----------------------------PKWMDYYIGKSEYRNN 173
GY K EE+V++F K++ Y+ K+ +
Sbjct: 282 GYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLE 341
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY----GLHEWSAFGSFDGL 229
V +LID+YAKCG + A F+ KD V +++I GY L E A F +
Sbjct: 342 STVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLME--AMKLFKMM 399
Query: 230 LSNEEN----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY- 281
+ EE Y + S L L+ GK +H IK G+ ++ S+ LI + A C
Sbjct: 400 MIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEV 459
Query: 282 -----------QPNVTLWNAMISGYAKNG------------------------------Y 300
+ WN +IS + G
Sbjct: 460 GDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMC 519
Query: 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 360
A A K K + + + Y + + + LI+MY+KCG ++ + F+R +DVV +
Sbjct: 520 ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWT 579
Query: 361 AMTVGYGLHGLGE-----------------------------------EGWVLFHHIRKH 385
M YG++G GE EG F ++ H
Sbjct: 580 GMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTH 639
Query: 386 -GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWK 434
I+P +HYA VVDLL+R+ + A +FI MPI+ S+ ++L A +
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACR 689
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 56/224 (25%)
Query: 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI---------------SLTAVCRYQP- 283
AL S +L L + +H +I LGL+ SD SL+ R P
Sbjct: 13 ALSSSSNLNELRR---IHALVISLGLD-SSDFFSGKLIDKYSHFREPASSLSVFRRVSPA 68
Query: 284 -NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--------------------- 321
NV LWN++I ++KNG EA++ + K + + +Y
Sbjct: 69 KNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLV 128
Query: 322 ---------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372
+++ V L+DMY++ G + A FD +D+V +++ GY HG
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188
Query: 373 EEGWVLFHHIRKHGIEPRHQHYARVVD-----LLARAGYSNHAF 411
EE ++H ++ I P + V+ L+ + G H F
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGF 232
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 119/479 (24%), Positives = 185/479 (38%), Gaps = 134/479 (27%)
Query: 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CRYQP---------NVTLR-- 137
L + ++ L G+ VH +KLGL+L + SL + C+ + N++ R
Sbjct: 322 LATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDL 381
Query: 138 ---NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR----------------------- 171
N++I+G A+NG EAV LF + + + +Y
Sbjct: 382 ISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHV 441
Query: 172 -----NNV---IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY-----GLH 218
NNV V+T LID Y++ + A + F+R + D+V +AM+ GY G
Sbjct: 442 HAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH-NFDLVAWNAMMAGYTQSHDGHK 500
Query: 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEF-LEQGKIVHGFMIKLGLELES-------D 270
F ++ + +C F + QGK VH + IK G +L+ D
Sbjct: 501 TLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILD 560
Query: 271 LLISLTAVCRYQ--------PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 322
+ + + Q P+ W MISG +NG E A +F + + E+
Sbjct: 561 MYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFT 620
Query: 323 ------------------------------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352
N+ V T L+DMYAKCGS+D A F R
Sbjct: 621 IATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIE 680
Query: 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR----------------------------K 384
++ +AM VG HG G+E LF ++ K
Sbjct: 681 MMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYK 740
Query: 385 H--------GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
H GI+P +HY+ + D L RAG A I +M +E S+ R LL+A ++
Sbjct: 741 HMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRV 799
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 125/311 (40%), Gaps = 65/311 (20%)
Query: 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192
+V L N M+ Y + G+ EEA+ L + + +E ++ D + G V
Sbjct: 210 DVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDD--SDAGQVKS 267
Query: 193 APMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDC--------- 243
D + +++ R+ GL E+ G + LL + + ++C
Sbjct: 268 FANGNDASSVSEIIFRNK-----GLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322
Query: 244 --SCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVT 286
+ ++ L G+ VH +KLGL+L S+ LI++ R + ++
Sbjct: 323 ATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLI 382
Query: 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------------ 322
WN++I+G A+NG EAV LF + + + +Y
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVH 442
Query: 323 ----NNV---IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
NNV V+T LID Y++ + A + F+R + D+V +AM GY G +
Sbjct: 443 AIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH-NFDLVAWNAMMAGYTQSHDGHKT 501
Query: 376 WVLFHHIRKHG 386
LF + K G
Sbjct: 502 LKLFALMHKQG 512
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 30/156 (19%)
Query: 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-------WSAFGSFDGLLSN 232
LI MY+KCGS+ A FD+ D+D+V ++++ Y AF F L
Sbjct: 80 LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRIL--R 137
Query: 233 EENEYGTALDCSCDLEF-LEQGKI-----VHGFMIKLGL---ELESDLLISL-------- 275
++ Y + + S L+ L G + HG+ K+GL E + L+++
Sbjct: 138 QDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVK 197
Query: 276 --TAVCRYQP--NVTLWNAMISGYAKNGYAEEAVKL 307
+ P +V LWN M+ Y + G+ EEA+ L
Sbjct: 198 EGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG-----EEGWVLFHHIRKH 385
LI MY+KCGS+ A FD+ D+D+V +++ Y ++ ++LF +R+
Sbjct: 80 LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139
Query: 386 GIEPRHQHYARVVDLLARAGY 406
+ + ++ L +GY
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGY 160
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT----------- 125
G+L +E A SC L LEQG+ +H +KL + + SL
Sbjct: 613 GVLPDEFTIATLAKASSC-LTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDD 671
Query: 126 AVCRYQP----NVTLRNAMISGYAKNGYAEEAVKLFPK 159
A C ++ N+T NAM+ G A++G +E ++LF +
Sbjct: 672 AYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQ 709
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 127/323 (39%), Gaps = 88/323 (27%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGY--GLHEWSAFGSFDGLLSNEE 234
T LI Y +CG +DLA FD+ KDVV+ +AM+ G+ SA FD +
Sbjct: 148 TALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV 207
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294
+ T + C+++ ++ + + M + N+ WN MI G
Sbjct: 208 ITWTTMIHGYCNIKDIDAARKLFDAMP--------------------ERNLVSWNTMIGG 247
Query: 295 YAKNGYAEEAVKLFPK-------------------------------WMDYYIGKSEYRN 323
Y +N +E ++LF + W ++ + +
Sbjct: 248 YCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDK 307
Query: 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG------------- 370
V V T ++DMY+KCG ++ A FD +K V +AM GY L+G
Sbjct: 308 KVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM 367
Query: 371 ---------------------LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409
L EEG FH +R+ G+ + +HY +VDLL RAG
Sbjct: 368 IEEKPDEITMLAVITACNHGGLVEEGRKWFHVMREMGLNAKIEHYGCMVDLLGRAGSLKE 427
Query: 410 AFKFIMNMPIELRLSVRRALLSA 432
A I NMP E + + LSA
Sbjct: 428 AEDLITNMPFEPNGIILSSFLSA 450
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 174/455 (38%), Gaps = 137/455 (30%)
Query: 102 GKIVHGFMIKLGLELE---SDLLISLTAVCR------------YQPNVTLRNAMISGYA- 145
G+ VHG +IK G E L+ + A C +PN NA+I+G+
Sbjct: 120 GEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQ 179
Query: 146 ----------------KNGYAEEAVKLFP--------------KWMDYYIGKSEYRNNVI 175
K +A P K + + K ++ +
Sbjct: 180 VRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEIT 239
Query: 176 VNTVLIDMYAKCGSVDLAPMFFDRTL-DKDVVMRSAMIVGYGLHEW--SAFGSFDGLLSN 232
+ +I YA CGSV A FD KD++ ++MI G+ HE SAF F + +
Sbjct: 240 ICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRH 299
Query: 233 --EENEYG-TALDCSCDLEFLEQ-GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL- 287
E + Y T L +C E + GK +HG +IK GLE + +L ++ P T+
Sbjct: 300 WVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTME 359
Query: 288 ----------------WNAMISGYAKNGYAEEAVKLFP-------KWMDYYIG------- 317
WN++I+G+A+ G +E+AVK F K DY
Sbjct: 360 DALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCS 419
Query: 318 ----------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRS 360
KS + +N V + LI MY+KCG ++ A F + K V +
Sbjct: 420 DLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWN 479
Query: 361 AMTVGYGLHGLGEEGWVLFHHIRKHG---------------------------------- 386
AM +GY HGLG+ LF +
Sbjct: 480 AMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPV 539
Query: 387 --IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPI 419
I+PR +HYA VDLL RAG N A + I +MP+
Sbjct: 540 YKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPL 574
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 129/332 (38%), Gaps = 61/332 (18%)
Query: 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE--WSAFGSF 226
+++ V+ ++D Y K G + A M FD +D V + MI GY G E W F
Sbjct: 33 SDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCM 92
Query: 227 DGLLSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCR-- 280
S+ + + L ++ + G+ VHG +IK G E L+ + A C
Sbjct: 93 KRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERV 152
Query: 281 ----------YQPNVTLWNAMISGYA-----------------KNGYAEEAVKLFP---- 309
+PN WNA+I+G+ K +A P
Sbjct: 153 EDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTL 212
Query: 310 ----------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT-LDKDVVM 358
K + + K ++ + + +I YA CGSV A FD KD++
Sbjct: 213 LDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLIS 272
Query: 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAF-----KF 413
++M G+ H L E + LF +++H +E Y + L A +G + F
Sbjct: 273 WNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGL--LSACSGEEHQIFGKSLHGM 330
Query: 414 IMNMPIELRLSVRRALLSAW-KIPMQQWENML 444
++ +E S AL+S + + P E+ L
Sbjct: 331 VIKKGLEQVTSATNALISMYIQFPTGTMEDAL 362
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 115/300 (38%), Gaps = 65/300 (21%)
Query: 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR-----------------NAMISGY 144
GK +HG +IK GLE + +L ++ P T+ N++I+G+
Sbjct: 324 GKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGF 383
Query: 145 AKNGYAEEAVKLFP-------KWMDYYIG-----------------------KSEYRNNV 174
A+ G +E+AVK F K DY KS + +N
Sbjct: 384 AQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNE 443
Query: 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHEWSAFGSFDGLLSNE 233
V + LI MY+KCG ++ A F + K V +AMI+GY H G L ++
Sbjct: 444 FVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQH---GLGQVSLDLFSQ 500
Query: 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293
LD L H +I+ GLE LL + V + QP + + A +
Sbjct: 501 MCNQNVKLDHVTFTAILT--ACSHTGLIQEGLE----LLNLMEPVYKIQPRMEHYAAAVD 554
Query: 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353
+ G +A +L I + +V + + CG +++A + L+
Sbjct: 555 LLGRAGLVNKAKEL--------IESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLE 606
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 104/435 (23%), Positives = 175/435 (40%), Gaps = 124/435 (28%)
Query: 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK---NGYAE 151
DL F G+ VHGF+++LG++ DL NA+++ YAK G
Sbjct: 120 DLRF---GESVHGFIVRLGMDC--DLYTG--------------NALMNMYAKLLGMGSKI 160
Query: 152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211
+F + + +V T ++ +D F+ KDVV + +
Sbjct: 161 SVGNVFDEMPQRTSNSGD--EDVKAETCIMPF-----GIDSVRRVFEVMPRKDVVSYNTI 213
Query: 212 IVGY---GLHEWS-----AFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263
I GY G++E + G+ D L + + L + + +GK +HG++I+
Sbjct: 214 IAGYAQSGMYEDALRMVREMGTTD--LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRK 271
Query: 264 GLELESDLLISLTAVCRYQPNVTL-----------------WNAMISGYAKNGYAEEAVK 306
G++ SD+ I + V Y + + WN++++GY +NG EA++
Sbjct: 272 GID--SDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALR 329
Query: 307 LFP------------------------------KWMDYYIGKSEYRNNVIVNTVLIDMYA 336
LF K + Y+ + + +N+ + + L+DMY+
Sbjct: 330 LFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYS 389
Query: 337 KCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----- 391
KCG++ A FDR D V +A+ +G+ LHG G E LF +++ G++P
Sbjct: 390 KCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVA 449
Query: 392 -------------------------------QHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+HYA V DLL RAG A+ FI M +E
Sbjct: 450 VLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVE 509
Query: 421 LRLSVRRALLSAWKI 435
SV LLS+ +
Sbjct: 510 PTGSVWSTLLSSCSV 524
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 91/357 (25%)
Query: 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI---------------- 175
P++ L A I+ + NG ++A L+ + + I +E+ + +
Sbjct: 93 PDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHV 152
Query: 176 ----------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAF 223
V T L+D+YAK G V A FDR ++ +V +AMI Y +A
Sbjct: 153 LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 212
Query: 224 GSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI---SLTAVCR 280
FD + + + +D G HGF +D L+ L A +
Sbjct: 213 ALFDSMCERDIVSWNVMID----------GYAQHGF--------PNDALMLFQKLLAEGK 254
Query: 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340
+P+ A +S ++ G E +W+ ++ S R NV V T LIDMY+KCGS
Sbjct: 255 PKPDEITVVAALSACSQIGALETG-----RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGS 309
Query: 341 VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHI------------------ 382
++ A + F+ T KD+V +AM GY +HG ++ LF+ +
Sbjct: 310 LEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQ 369
Query: 383 -------------------RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIE 420
+++GI+P+ +HY +V LL RAG A++ I NM ++
Sbjct: 370 ACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD 426
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 131/364 (35%), Gaps = 123/364 (33%)
Query: 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197
N MI+GYA+ G E+A +LF M+ +N V N +I Y +CG ++ A FF
Sbjct: 159 NTMITGYARRGEMEKARELFYSMME--------KNEVSWNA-MISGYIECGDLEKASHFF 209
Query: 198 DRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
+ VV +AMI G
Sbjct: 210 KVAPVRGVVAWTAMITG------------------------------------------- 226
Query: 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD---- 313
+M +EL + +T N+ WNAMISGY +N E+ +KLF ++
Sbjct: 227 -YMKAKKVELAEAMFKDMTV----NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIR 281
Query: 314 --------------------------YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 347
+ KS N+V T LI MY KCG + A
Sbjct: 282 PNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKL 341
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH-------------------------- 381
F+ KDVV +AM GY HG ++ LF
Sbjct: 342 FEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLV 401
Query: 382 ----------IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431
+R + +EP+ HY +VDLL RAG A K I +MP +V LL
Sbjct: 402 NIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLG 461
Query: 432 AWKI 435
A ++
Sbjct: 462 ACRV 465
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 34/246 (13%)
Query: 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE---W 220
Y+ K ++ + +I + G +D A F K+ + +++++G
Sbjct: 51 YLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM 110
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK----------------IVHGFMIKLG 264
A FD + + Y L C E+ + ++ G+ +
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170
Query: 265 LELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324
+E +L S+ + N WNAMISGY + G E+A F K
Sbjct: 171 MEKARELFYSMM-----EKNEVSWNAMISGYIECGDLEKASHFF---------KVAPVRG 216
Query: 325 VIVNTVLIDMYAKCGSVDLA-PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383
V+ T +I Y K V+LA MF D T++K++V +AM GY + E+G LF +
Sbjct: 217 VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAML 276
Query: 384 KHGIEP 389
+ GI P
Sbjct: 277 EEGIRP 282
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 76 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV-CR----- 129
+G+ N L CS +L L+ G+ +H + K L + L SL ++ C+
Sbjct: 278 EGIRPNSSGLSSALLGCS-ELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELG 336
Query: 130 ---------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165
+ +V NAMISGYA++G A++A+ LF + +D I
Sbjct: 337 DAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKI 381
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 150/382 (39%), Gaps = 100/382 (26%)
Query: 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL--HEWSAFG 224
K+ Y + T L+ Y KC ++ A D +K+VV +AMI Y H A
Sbjct: 80 KTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALT 139
Query: 225 SFDGLLSNE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE----LESDLLISLT 276
F ++ ++ E + T L L GK +HG ++K + + S LL
Sbjct: 140 VFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYA 199
Query: 277 AV-----------CRYQPNVTLWNAMISGYAKNGYAEEAVKLF---------PKWMDY-- 314
C + +V A+I+GYA+ G EEA+++F P ++ Y
Sbjct: 200 KAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYAS 259
Query: 315 -------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355
++ + E ++ LIDMY+KCG++ A FD ++
Sbjct: 260 LLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERT 319
Query: 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIR-------------------------------- 383
+ +AM VGY HGLG E LF +R
Sbjct: 320 AISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIF 379
Query: 384 ------KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPM 437
++G +P +HY +VD+L RAG + AF+FI MP + V +LL A ++ +
Sbjct: 380 DGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHL 439
Query: 438 QQWENMLQTIRGIDEGEKTDKR 459
+D GE +R
Sbjct: 440 S-----------VDIGESVGRR 450
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 30/121 (24%)
Query: 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLF---------PKWMDY--------------- 163
C + +V A+I+GYA+ G EEA+++F P ++ Y
Sbjct: 213 CLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDH 272
Query: 164 ------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217
++ + E ++ LIDMY+KCG++ A FD ++ + +AM+VGY
Sbjct: 273 GKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSK 332
Query: 218 H 218
H
Sbjct: 333 H 333
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 174/442 (39%), Gaps = 106/442 (23%)
Query: 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-------- 130
S E N Y T + C E+ K +H M+K GL +S + + C
Sbjct: 8 FSLEHNLYET-MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLP 66
Query: 131 ----------QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------------------- 161
+P+ L N MI G++ + E ++ L+ + +
Sbjct: 67 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 162 -----------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210
I K Y N+V LI+ YA G+ LA + FDR + D V ++
Sbjct: 127 NLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNS 186
Query: 211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270
+I GY G D L T + + ++ G+ ++ + E+
Sbjct: 187 VIKGY-----VKAGKMDIAL--------TLFRKMAEKNAISWTTMISGY-VQADMNKEAL 232
Query: 271 LLISLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 329
L +P NV+L NA+ S A+ G E+ KW+ Y+ K+ R + ++
Sbjct: 233 QLFHEMQNSDVEPDNVSLANAL-SACAQLGALEQG-----KWIHSYLNKTRIRMDSVLGC 286
Query: 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG----------------- 372
VLIDMYAKCG ++ A F K V +A+ GY HG G
Sbjct: 287 VLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKP 346
Query: 373 ------------------EEGWVLFHHI-RKHGIEPRHQHYARVVDLLARAGYSNHAFKF 413
EEG ++F+ + R + ++P +HY +VDLL RAG + A +F
Sbjct: 347 NVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRF 406
Query: 414 IMNMPIELRLSVRRALLSAWKI 435
I MP++ + ALL A +I
Sbjct: 407 IQEMPLKPNAVIWGALLKACRI 428
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 154/408 (37%), Gaps = 122/408 (29%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------DYY----------------IGKS 168
+ NV + N MI Y NG+ E VK+F D+Y IG+
Sbjct: 102 ERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK 161
Query: 169 EY--------RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+ + + V L+ MY KCG + A + D +DVV ++++VGY
Sbjct: 162 IHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYA---- 217
Query: 221 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH--GFMIKL-----GLELESDLLI 273
+ + AL+ ++E + KI H G M L E+ + +
Sbjct: 218 ------------QNQRFDDALEVCREMESV---KISHDAGTMASLLPAVSNTTTENVMYV 262
Query: 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP------------------------ 309
+ ++ WN MI Y KN EAV+L+
Sbjct: 263 KDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDT 322
Query: 310 ------KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT 363
K + YI + + N+++ LIDMYAKCG ++ A F+ +DVV +AM
Sbjct: 323 SALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMI 382
Query: 364 VGYGLHGLGEEGWVLFHHIRKHG------------------------------------I 387
YG G G + LF ++ G I
Sbjct: 383 SAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKI 442
Query: 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
PR +H A +VDLL RAG A++FI +M +E V ALL A ++
Sbjct: 443 TPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRV 490
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 23/161 (14%)
Query: 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW-----SAF 223
+ R N + L+ YA V A FD +++V++ + MI Y + + F
Sbjct: 69 DLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVF 128
Query: 224 GSFDGL-LSNEENEYGTALD-CSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAV 278
G+ G + + + L CSC + G+ +HG K+GL + L+S+
Sbjct: 129 GTMCGCNVRPDHYTFPCVLKACSCSGTIV-IGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187
Query: 279 CRY------------QPNVTLWNAMISGYAKNGYAEEAVKL 307
C + + +V WN+++ GYA+N ++A+++
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEV 228
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 159/386 (41%), Gaps = 87/386 (22%)
Query: 77 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 136
GLL N C+ F ++G+ +HG ++KLG +L+ + +
Sbjct: 129 GLLPNSYTFPFVLKSCAKSKAF-KEGQQIHGHVLKLGCDLD----------------LYV 171
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMF 196
++IS Y +NG E+A K+F KS +R+ V+ T LI YA G ++ A
Sbjct: 172 HTSLISMYVQNGRLEDAHKVF--------DKSPHRD-VVSYTALIKGYASRGYIENAQKL 222
Query: 197 FDRTLDKDVVMRSAMIVGYGL--HEWSAFGSFDGLLSN----EENEYGTALDCSCDLEFL 250
FD KDVV +AMI GY + A F ++ +E+ T + +
Sbjct: 223 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 282
Query: 251 EQGKIVH------GFMIKLGLELESDLLISLTAVC-------------RYQPNVTLWNAM 291
E G+ VH GF L + + LI L + C Y+ +V WN +
Sbjct: 283 ELGRQVHLWIDDHGFGSNLKI---VNALIDLYSKCGELETACGLFERLPYK-DVISWNTL 338
Query: 292 ISGYAKNGYAEEAVKLFP------------------------------KWMDYYIGK--S 319
I GY +EA+ LF +W+ YI K
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398
Query: 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLF 379
N + T LIDMYAKCG ++ A F+ L K + +AM G+ +HG + + LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 380 HHIRKHGIEPRHQHYARVVDLLARAG 405
+RK GI+P + ++ + +G
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSG 484
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 69/181 (38%), Gaps = 48/181 (26%)
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCR------------------YQPNVTLWNAM 291
L+ +I+H MIK+GL + L L C +PN+ +WN M
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105
Query: 292 ISGYAKNGYAEEAVKL---------------FPKWMDYYIGKSEYRN------------- 323
G+A + A+KL FP + ++
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165
Query: 324 --NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381
++ V+T LI MY + G ++ A FD++ +DVV +A+ GY G E LF
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225
Query: 382 I 382
I
Sbjct: 226 I 226
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 143/374 (38%), Gaps = 96/374 (25%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+ N+ N+M+ + G +EA+ LF + R +V+ T ++D AK G V
Sbjct: 168 ERNIVSWNSMVKALVQRGRIDEAMNLFERM---------PRRDVVSWTAMVDGLAKNGKV 218
Query: 191 DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFL 250
D A FD +++++ +AMI GY + N +E + +F
Sbjct: 219 DEARRLFDCMPERNIISWNAMITGYAQN-------------NRIDEADQLFQVMPERDFA 265
Query: 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310
++ GF+ + L + + NV W MI+GY +N EEA+ +F K
Sbjct: 266 SWNTMITGFIRNREMNKACGLFDRMP-----EKNVISWTTMITGYVENKENEEALNVFSK 320
Query: 311 WM-------------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ I KS ++ N IV + L++MY+K G
Sbjct: 321 MLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSG 380
Query: 340 SVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-------- 389
+ A FD L +D++ ++M Y HG G+E +++ +RKHG +P
Sbjct: 381 ELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNL 440
Query: 390 ----------------------------RHQHYARVVDLLARAGYSNHAFKFIMNMPIEL 421
R +HY +VDL RAG FI L
Sbjct: 441 LFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARL 500
Query: 422 RLSVRRALLSAWKI 435
S A+LSA +
Sbjct: 501 SRSFYGAILSACNV 514
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 45/280 (16%)
Query: 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199
+I+GY K G EA +LF + + R NV+ T ++ Y + + +A M F
Sbjct: 83 VITGYIKLGDMREARELF--------DRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQE 134
Query: 200 TLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVH 257
+++VV + MI GY + G D L +E E S +++G+I
Sbjct: 135 MPERNVVSWNTMIDGY-----AQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDE 189
Query: 258 GFMIKLGLELESDLLISLTAV------------------CRYQPNVTLWNAMISGYAKNG 299
+ L + ++S TA+ C + N+ WNAMI+GYA+N
Sbjct: 190 A--MNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNN 247
Query: 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMR 359
+EA +LF + R+ NT +I + + ++ A FDR +K+V+
Sbjct: 248 RIDEADQLFQVMPE--------RDFASWNT-MITGFIRNREMNKACGLFDRMPEKNVISW 298
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVV 398
+ M GY + EE +F + + G ++P Y ++
Sbjct: 299 TTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSIL 338
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ NV W AM+SGY ++ A LF + + NV+ +ID YA+ G +
Sbjct: 106 RKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPE---------RNVVSWNTMIDGYAQSGRI 156
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
D A FD ++++V ++M G +E LF + + + + +VD L
Sbjct: 157 DKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDV----VSWTAMVDGL 212
Query: 402 ARAGYSNHAFKFIMNMP 418
A+ G + A + MP
Sbjct: 213 AKNGKVDEARRLFDCMP 229
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341
+ +V W +I+GY K G EA +LF + + R NV+ T ++ Y + +
Sbjct: 74 ERDVVTWTHVITGYIKLGDMREARELF--------DRVDSRKNVVTWTAMVSGYLRSKQL 125
Query: 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401
+A M F +++VV + M GY G ++ LF + + I + +V L
Sbjct: 126 SIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI----VSWNSMVKAL 181
Query: 402 ARAGYSNHAFKFIMNMP 418
+ G + A MP
Sbjct: 182 VQRGRIDEAMNLFERMP 198
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 142/353 (40%), Gaps = 97/353 (27%)
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDV-----VMRSAMIVGYGLHEWSAFGSFDGL-LS 231
T LI MY+ GSVD A FD+T + + + R+ + G+G + + + +
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 232 NEENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP---- 283
++ Y L C + L +GK +H + + G S + I T V Y
Sbjct: 176 SDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYS--SHVYIMTTLVDMYARFGCV 233
Query: 284 -------------NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------------- 314
NV W+AMI+ YAKNG A EA++ F + M
Sbjct: 234 DYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQ 293
Query: 315 ----------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 358
YI + + + V + L+ MY +CG +++ FDR D+DVV
Sbjct: 294 ACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVS 353
Query: 359 RSAMTVGYGLHGLG-----------------------------------EEGWVLFHHI- 382
+++ YG+HG G EEG LF +
Sbjct: 354 WNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMW 413
Query: 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R HGI+P+ +HYA +VDLL RA + A K + +M E V +LL + +I
Sbjct: 414 RDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRI 466
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 53/190 (27%)
Query: 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-----------------NVTL 136
C + L +GK +H + + G S + I T V Y NV
Sbjct: 193 CTVNHLMKGKEIHAHLTRRGYS--SHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS 250
Query: 137 RNAMISGYAKNGYAEEAVKLFPKWMDY--------------------------------Y 164
+AMI+ YAKNG A EA++ F + M Y
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGY 310
Query: 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW--SA 222
I + + + V + L+ MY +CG +++ FDR D+DVV +++I YG+H + A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 223 FGSFDGLLSN 232
F+ +L+N
Sbjct: 371 IQIFEEMLAN 380
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 82/195 (42%), Gaps = 49/195 (25%)
Query: 16 VLKACVA----LPSLLMGPRVHGQIFSLGF---------------------LVCYLFDGL 50
VLKACVA + L+ G +H + G+ Y+F G+
Sbjct: 184 VLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGM 243
Query: 51 FDRTIV-FLDLYHLWSRT--EWSAFGSFDGLLSNEENEYGTA------LDCSCDLEFLEQ 101
R +V + + +++ + A +F ++ ++ + L L LEQ
Sbjct: 244 PVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ 303
Query: 102 GKIVHGFMIKLGLEL---ESDLLISLTAVC------------RYQPNVTLRNAMISGYAK 146
GK++HG++++ GL+ L+++ C + +V N++IS Y
Sbjct: 304 GKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGV 363
Query: 147 NGYAEEAVKLFPKWM 161
+GY ++A+++F + +
Sbjct: 364 HGYGKKAIQIFEEML 378
>sp|Q84MA3|PP345_ARATH Pentatricopeptide repeat-containing protein At4g32430,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2
SV=1
Length = 763
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 120/537 (22%), Positives = 206/537 (38%), Gaps = 138/537 (25%)
Query: 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGF----LVCYLFDGLFDRTIV 56
M+ A V + T L CV L+G ++ + G +V F ++ R+
Sbjct: 165 MKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGS 224
Query: 57 FLDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 116
F ++ + S++ LLS E GT F + ++ M++ G+EL
Sbjct: 225 FRGARRVFDEMSFKDMISWNSLLSGLSQE-GT---------FGFEAVVIFRDMMREGVEL 274
Query: 117 ESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176
+ S+ C ++ ++ L + K GY + + V
Sbjct: 275 DHVSFTSVITTCCHETDLKLARQIHGLCIKRGY---------------------ESLLEV 313
Query: 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGS--FDGLLSNEE 234
+L+ Y+KCG ++ F + +++VV + MI S F + FDG+ NE
Sbjct: 314 GNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDDAVSIFLNMRFDGVYPNEV 373
Query: 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS-LTAVCRYQP---------- 283
G C+ E +++G +HG IK G E + S +T +++
Sbjct: 374 TFVGLINAVKCN-EQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFED 432
Query: 284 ----NVTLWNAMISGYAKNGYAEEAVKLFPKWM------DYYIG--------------KS 319
+ WNAMISG+A+NG++ EA+K+F +Y G K
Sbjct: 433 ITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTFGSVLNAIAFAEDISVKQ 492
Query: 320 EYRNNV-----------IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGL 368
R + +V++ L+DMYAK G++D + F+ K+ + +++ Y
Sbjct: 493 GQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSS 552
Query: 369 HGLGEEGWVLFHHIRKHGI------------------------------------EPRHQ 392
HG E LFH + K + EP H+
Sbjct: 553 HGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHE 612
Query: 393 HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRG 449
HY+ +VD+L RAG RL L+S ++P E+MLQ++ G
Sbjct: 613 HYSCMVDMLGRAG----------------RLKEAEELMS--EVPGGPGESMLQSMLG 651
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 112/289 (38%), Gaps = 70/289 (24%)
Query: 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW------- 220
S + + V V+ ++ MY K G D A F+ +D DVV + ++ G+ ++
Sbjct: 105 SGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDNQIALNFVVR 164
Query: 221 --SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278
SA FD Y TAL E G + ++K G LESDL++ + +
Sbjct: 165 MKSAGVVFDAFT------YSTALSFCVGSEGFLLGLQLQSTVVKTG--LESDLVVGNSFI 216
Query: 279 CRYQ-----------------PNVTLWNAMISGYAKNG-YAEEAVKLFPKWMDYYIG--- 317
Y ++ WN+++SG ++ G + EAV +F M +
Sbjct: 217 TMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDH 276
Query: 318 ---------------------------KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 350
K Y + + V +L+ Y+KCG ++ F +
Sbjct: 277 VSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQ 336
Query: 351 TLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
+++VV + M + ++ +F ++R G+ P + +++
Sbjct: 337 MSERNVVSWTTM-----ISSNKDDAVSIFLNMRFDGVYPNEVTFVGLIN 380
>sp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protein At4g31070,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=2
SV=2
Length = 624
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 119/536 (22%), Positives = 204/536 (38%), Gaps = 144/536 (26%)
Query: 1 MQVAWVAPNGCTP--PLVLKACV-ALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVF 57
+++ + NG T P V+KAC L+G ++H G D + +++
Sbjct: 46 LKIHSLGTNGFTAILPSVIKACAFQQEPFLLGAQLHCLCLKAGADC----DTVVSNSLI- 100
Query: 58 LDLYHLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE 117
+Y +SR +++ FD +L + Y + ++ C L + + M G +
Sbjct: 101 -SMYAKFSR-KYAVRKVFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEMYFYGFIPK 158
Query: 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177
S+L+ SL A+C + G + + ++F + + + +V+++
Sbjct: 159 SELVASLLALC----------------TRMGSSSKVARMFHALV---LVDERMQESVLLS 199
Query: 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237
T L+DMY K A FD+ K+ V +AMI G ++N+ E
Sbjct: 200 TALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMI--------------SGCVANQNYEM 245
Query: 238 GTALDCSCDLEFLEQGKI---------------------VHGFMIKLGLELESDLLIS-L 275
G L + E L ++ +HGF + G + L + +
Sbjct: 246 GVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFM 305
Query: 276 TAVCR--------------YQPNVTLWNAMISGYAKNGYAEEAVKL-------------- 307
T CR +V +W++MISGYA+ G E + L
Sbjct: 306 TMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSV 365
Query: 308 ----------------FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351
F + I K + +++++ LIDMYAKCGS+ A F
Sbjct: 366 TLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYEL 425
Query: 352 LDKDVVMRSAMTVGYGLHGLG-----------------------------------EEGW 376
+KD+V S+M YGLHG G EE
Sbjct: 426 TEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQ 485
Query: 377 VLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSA 432
+F K+ + +HYA ++LL R G + AF+ +NMP++ + +LLSA
Sbjct: 486 TIFTQAGKYHMPVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSA 541
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 139/355 (39%), Gaps = 71/355 (20%)
Query: 99 LEQGKIVHGFMIKLGLELES---DLLISLTAVCR------------YQPNVTLRNAMISG 143
+E G+ +H MIK+GLE S L+ + A C PN + SG
Sbjct: 176 VEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSG 235
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 203
Y K G EEAV +F + D +R + + +I+ Y + G + A + F
Sbjct: 236 YVKAGLPEEAVLVFERMRD-----EGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSP 290
Query: 204 DVVMRSAMIVGYGLHEWSA------FGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257
DVV + MI G+G F + + + G+ L + L+ G +VH
Sbjct: 291 DVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVH 350
Query: 258 GFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLWNAMISGYAKNGYAE 302
IKLGL L+S+ + C + N WNAMI GYA NG +
Sbjct: 351 AEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESH 410
Query: 303 EAVKLF--PKWMDYYIG----------------------------KSEYRNNVIVNTVLI 332
+ ++LF K Y I K + N+ V L+
Sbjct: 411 KVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALV 470
Query: 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387
DMYAKCG+++ A F+R D+D V + + Y E + LF + GI
Sbjct: 471 DMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGI 525
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 163/419 (38%), Gaps = 106/419 (25%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
L+ G +VH IKLGL L+S+ + C + N NAMI G
Sbjct: 343 LDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRG 402
Query: 144 YAKNGYAEEAVKLFP--KWMDYYIG----------------------------KSEYRNN 173
YA NG + + ++LF K Y I K + N
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKN 462
Query: 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY--GLHEWSAFGSFD---- 227
+ V L+DMYAKCG+++ A F+R D+D V + +I Y +E AF F
Sbjct: 463 LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNL 522
Query: 228 -GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY-- 281
G++S+ T C+ + L QGK VH +K GL+ + LI + + C
Sbjct: 523 CGIVSDGACLASTLKACT-HVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIK 581
Query: 282 ----------QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV- 330
+ +V NA+I+GY++N EEAV LF + + + SE IV
Sbjct: 582 DARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACH 640
Query: 331 ------------------------------LIDMYAKC-GSVDLAPMFFDRTLDKDVVMR 359
L+ MY G + +F + + K +V+
Sbjct: 641 KPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLW 700
Query: 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA---RVVDLLA--RAGYSNHAFKF 413
+ M G+ +G EE + +R G+ P + RV +L+ R G + H+ F
Sbjct: 701 TGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIF 759
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 160/407 (39%), Gaps = 107/407 (26%)
Query: 99 LEQGKIVHGFMIKLGLELE---SDLLISLTAVCRY------------QPNVTLRNAMISG 143
L QGK VH +K GL+ + LI + + C + +V NA+I+G
Sbjct: 545 LYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAG 604
Query: 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV------------------------ 179
Y++N EEAV LF + + + SE IV
Sbjct: 605 YSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSE 663
Query: 180 -------LIDMYAKC-GSVDLAPMFFDRTLDKDVVMRSAMIVGY---GLHE----WSAFG 224
L+ MY G + +F + + K +V+ + M+ G+ G +E +
Sbjct: 664 GEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEM 723
Query: 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVC-- 279
DG+L ++ + T L L L +G+ +H + L EL S+ LI + A C
Sbjct: 724 RHDGVLPDQAT-FVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGD 782
Query: 280 -----------RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 328
R + NV WN++I+GYAKNGYAE+A+K+F +I E I
Sbjct: 783 MKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDE-----ITF 837
Query: 329 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388
++ + G V F+ M +G ++GIE
Sbjct: 838 LGVLTACSHAGKVSDGRKIFE------------MMIG------------------QYGIE 867
Query: 389 PRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435
R H A +VDLL R GY A FI ++ + +LL A +I
Sbjct: 868 ARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRI 914
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 35/267 (13%)
Query: 165 IGKSEYRNNVIVN--------TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216
IGK+ + ++I+ ++D+YAKC V A FD L+KDV ++M+ Y
Sbjct: 78 IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD-FLEKDVTAWNSMLSMYS 136
Query: 217 L--HEWSAFGSFDGLLSNE--ENEYGTALDCS-CDLEF-LEQGKIVHGFMIKLGLELES- 269
SF L N+ N++ ++ S C E +E G+ +H MIK+GLE S
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196
Query: 270 --DLLISLTAVCR------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315
L+ + A C PN W + SGY K G EEAV +F + D
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRD-- 254
Query: 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEG 375
+R + + +I+ Y + G + A + F DVV + M G+G G
Sbjct: 255 ---EGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVA 311
Query: 376 WVLFHHIRKHGIEPRHQHYARVVDLLA 402
F ++RK ++ V+ +
Sbjct: 312 IEYFFNMRKSSVKSTRSTLGSVLSAIG 338
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 129/352 (36%), Gaps = 86/352 (24%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------- 171
P+V N MISG+ K G A++ F + +
Sbjct: 289 SPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348
Query: 172 -----------NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEW 220
+N+ V + L+ MY+KC ++ A F+ +K+ V +AMI GY H
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYA-HNG 407
Query: 221 SAFGSFDGLLSNEENEYG------TALDCSCDLEF-LEQGKIVHGFMIKLGLE---LESD 270
+ + + + + Y T+L +C LE G H +IK L +
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467
Query: 271 LLISLTAVCRY-------------QPNVTLWNAMISGYAKNGYAEEAVKLFPKW------ 311
L+ + A C + NVT WN +I Y ++ EA LF +
Sbjct: 468 ALVDMYAKCGALEDARQIFERMCDRDNVT-WNTIIGSYVQDENESEAFDLFKRMNLCGIV 526
Query: 312 ----------------MDYYIGKSEY--------RNNVIVNTVLIDMYAKCGSVDLAPMF 347
Y GK + ++ + LIDMY+KCG + A
Sbjct: 527 SDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKV 586
Query: 348 FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399
F + VV +A+ GY + L EE VLF + G+ P +A +V+
Sbjct: 587 FSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVE 637
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 44/200 (22%)
Query: 250 LEQGKIVHGFMIKLGLELESDL---LISLTAVCRY-----------QPNVTLWNAMISGY 295
L GK VH + LG++ E L ++ L A C + +VT WN+M+S Y
Sbjct: 76 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEKDVTAWNSMLSMY 135
Query: 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT-------------------------- 329
+ G + ++ F + I +++ +++++T
Sbjct: 136 SSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNS 195
Query: 330 ----VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385
L+DMYAKC + A F+ +D + V + + GY GL EE ++F +R
Sbjct: 196 YCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDE 255
Query: 386 GIEPRHQHYARVVDLLARAG 405
G P H + V++ R G
Sbjct: 256 GHRPDHLAFVTVINTYIRLG 275
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 108/372 (29%)
Query: 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190
+PN +++ AK G +E ++ + Y G E+ V + L+ MY CG +
Sbjct: 125 EPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEF-----VMSNLVRMYVMCGFM 179
Query: 191 -DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEF 249
D +F+ ++KD+V ++++ G E
Sbjct: 180 KDARVLFYKNIIEKDMV----------------------VMTDRRKRDG---------EI 208
Query: 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309
+ ++ G+M +LG + +L Q +V WN MISGY+ NG+ ++AV++F
Sbjct: 209 VLWNVMIDGYM-RLGDCKAARMLFDKMR----QRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 310 K------------------------------WMDYYIGKSEYRNNVIVNTVLIDMYAKCG 339
+ W+ Y S R + ++ + LIDMY+KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 340 SVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG----------------------------- 370
++ A F+R ++V+ SAM G+ +HG
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 371 ------LGEEGWVLFHH-IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL 423
L EEG F + G+EPR +HY +VDLL R+G + A +FI+NMPI+
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 424 SVRRALLSAWKI 435
+ +ALL A ++
Sbjct: 444 VIWKALLGACRM 455
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,638,962
Number of Sequences: 539616
Number of extensions: 7323531
Number of successful extensions: 18906
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 13457
Number of HSP's gapped (non-prelim): 2552
length of query: 462
length of database: 191,569,459
effective HSP length: 121
effective length of query: 341
effective length of database: 126,275,923
effective search space: 43060089743
effective search space used: 43060089743
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)