Query 036356
Match_columns 462
No_of_seqs 392 out of 2531
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 11:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.2E-64 7E-69 518.4 41.4 451 1-457 77-656 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 6.4E-62 1.4E-66 501.4 39.7 423 1-441 178-675 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8.8E-62 1.9E-66 492.3 35.7 401 7-458 367-789 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 3.1E-61 6.6E-66 485.2 35.0 413 5-456 118-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 5.3E-61 1.2E-65 486.6 36.0 414 8-459 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-57 6.9E-62 456.1 35.7 407 6-457 83-526 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-23 4.5E-28 219.4 35.3 356 62-450 509-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.8E-22 6.1E-27 210.9 34.9 415 11-453 398-867 (899)
9 PRK11788 tetratricopeptide rep 99.9 3.4E-20 7.3E-25 175.7 26.3 300 92-459 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.5E-19 3.3E-24 171.3 23.4 289 62-417 45-344 (389)
11 KOG4626 O-linked N-acetylgluco 99.8 4E-17 8.6E-22 149.4 22.2 353 11-424 117-490 (966)
12 PRK11447 cellulose synthase su 99.8 5.4E-16 1.2E-20 165.0 34.0 379 19-453 278-741 (1157)
13 PRK15174 Vi polysaccharide exp 99.8 4.2E-16 9E-21 155.4 30.9 311 62-422 52-384 (656)
14 PRK15174 Vi polysaccharide exp 99.8 1.1E-15 2.4E-20 152.4 31.7 344 62-452 15-381 (656)
15 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-15 3.6E-20 151.4 30.9 343 62-451 137-570 (615)
16 PRK11447 cellulose synthase su 99.8 1.3E-15 2.8E-20 162.1 31.6 371 9-417 302-737 (1157)
17 KOG4626 O-linked N-acetylgluco 99.7 6.1E-16 1.3E-20 141.8 21.6 343 62-458 126-489 (966)
18 PRK10049 pgaA outer membrane p 99.7 1.3E-14 2.8E-19 147.8 33.7 385 8-451 13-455 (765)
19 TIGR00990 3a0801s09 mitochondr 99.7 4.9E-15 1.1E-19 148.1 28.1 362 13-417 130-568 (615)
20 PRK10049 pgaA outer membrane p 99.7 1.7E-13 3.8E-18 139.6 32.5 355 57-458 20-426 (765)
21 KOG4422 Uncharacterized conser 99.7 1.3E-13 2.9E-18 121.4 26.8 393 10-450 116-588 (625)
22 PRK14574 hmsH outer membrane p 99.6 1.1E-12 2.3E-17 131.7 32.0 373 20-446 44-507 (822)
23 PRK09782 bacteriophage N4 rece 99.6 2.9E-12 6.4E-17 131.3 35.3 161 283-451 540-705 (987)
24 PRK14574 hmsH outer membrane p 99.6 3.6E-12 7.8E-17 128.0 34.6 357 62-448 44-475 (822)
25 KOG4422 Uncharacterized conser 99.6 1.4E-12 3E-17 115.0 26.8 373 6-445 203-618 (625)
26 PRK09782 bacteriophage N4 rece 99.6 5E-12 1.1E-16 129.6 32.8 208 13-242 45-291 (987)
27 KOG2076 RNA polymerase III tra 99.5 7.6E-11 1.6E-15 113.5 28.2 356 62-451 150-554 (895)
28 PRK10747 putative protoheme IX 99.4 7.2E-11 1.6E-15 111.3 24.8 215 220-451 170-389 (398)
29 KOG2003 TPR repeat-containing 99.4 1.2E-10 2.5E-15 103.9 23.9 347 62-439 286-710 (840)
30 PF13429 TPR_15: Tetratricopep 99.4 3.7E-13 8E-18 121.1 8.0 157 237-417 113-274 (280)
31 PF13041 PPR_2: PPR repeat fam 99.4 6.1E-13 1.3E-17 84.5 5.6 50 354-403 1-50 (50)
32 PF13429 TPR_15: Tetratricopep 99.4 7E-13 1.5E-17 119.3 7.8 256 139-449 13-274 (280)
33 PRK10747 putative protoheme IX 99.4 2.7E-10 5.9E-15 107.4 24.4 283 62-417 94-387 (398)
34 KOG1126 DNA-binding cell divis 99.4 4.2E-11 9E-16 111.8 18.2 274 98-423 334-624 (638)
35 TIGR00540 hemY_coli hemY prote 99.4 3.8E-10 8.3E-15 106.9 24.9 209 220-449 170-396 (409)
36 PF13041 PPR_2: PPR repeat fam 99.4 9.7E-13 2.1E-17 83.6 4.8 50 132-186 1-50 (50)
37 KOG2002 TPR-containing nuclear 99.4 3.1E-10 6.8E-15 110.2 23.9 293 132-449 412-742 (1018)
38 KOG4318 Bicoid mRNA stability 99.3 2.8E-10 6E-15 109.4 21.8 356 1-436 16-392 (1088)
39 TIGR00540 hemY_coli hemY prote 99.3 5.6E-10 1.2E-14 105.8 24.3 287 62-417 94-396 (409)
40 KOG2076 RNA polymerase III tra 99.3 6.3E-10 1.4E-14 107.4 23.9 320 92-450 148-510 (895)
41 COG2956 Predicted N-acetylgluc 99.3 1.3E-09 2.8E-14 93.3 21.4 286 62-417 45-344 (389)
42 KOG1126 DNA-binding cell divis 99.3 1.7E-10 3.7E-15 107.8 17.1 268 149-452 334-620 (638)
43 KOG2003 TPR repeat-containing 99.3 8.6E-10 1.9E-14 98.4 19.2 378 20-454 211-690 (840)
44 COG3071 HemY Uncharacterized e 99.2 5.3E-09 1.1E-13 92.3 22.8 288 62-417 94-387 (400)
45 KOG1155 Anaphase-promoting com 99.2 3.4E-09 7.4E-14 95.0 21.1 204 206-433 331-550 (559)
46 KOG4318 Bicoid mRNA stability 99.2 8.8E-10 1.9E-14 106.0 17.1 257 104-406 11-286 (1088)
47 KOG2002 TPR-containing nuclear 99.2 1.2E-08 2.6E-13 99.5 24.2 361 62-452 280-709 (1018)
48 COG3071 HemY Uncharacterized e 99.2 2.5E-08 5.4E-13 88.1 23.6 295 96-457 97-395 (400)
49 COG2956 Predicted N-acetylgluc 99.1 1.8E-08 3.9E-13 86.5 20.8 282 145-454 46-349 (389)
50 KOG1155 Anaphase-promoting com 99.1 1.8E-08 3.9E-13 90.5 21.3 273 140-444 233-528 (559)
51 KOG0495 HAT repeat protein [RN 99.1 4.8E-08 1E-12 91.4 24.7 382 3-443 472-871 (913)
52 KOG1915 Cell cycle control pro 99.1 7.6E-07 1.6E-11 80.6 28.7 358 62-451 83-535 (677)
53 TIGR02521 type_IV_pilW type IV 99.0 4.9E-08 1.1E-12 85.2 20.1 190 235-449 32-229 (234)
54 TIGR02521 type_IV_pilW type IV 99.0 2.8E-08 6.1E-13 86.7 18.3 196 174-417 31-229 (234)
55 KOG0495 HAT repeat protein [RN 99.0 1.1E-06 2.3E-11 82.7 28.1 343 62-451 416-781 (913)
56 KOG1840 Kinesin light chain [C 99.0 9E-08 2E-12 90.5 21.4 102 83-199 199-308 (508)
57 KOG1915 Cell cycle control pro 99.0 3.4E-07 7.3E-12 82.8 23.5 362 24-431 87-548 (677)
58 KOG1173 Anaphase-promoting com 99.0 2.5E-07 5.3E-12 85.5 22.3 279 82-403 243-534 (611)
59 KOG0547 Translocase of outer m 99.0 1.6E-07 3.6E-12 85.0 20.7 203 220-449 343-563 (606)
60 KOG1840 Kinesin light chain [C 99.0 1.6E-07 3.5E-12 88.8 21.6 246 174-449 199-476 (508)
61 PRK12370 invasion protein regu 98.9 9.6E-08 2.1E-12 94.2 19.0 228 83-385 256-502 (553)
62 PRK12370 invasion protein regu 98.9 4.8E-07 1E-11 89.4 22.7 203 220-449 278-499 (553)
63 PF12569 NARP1: NMDA receptor- 98.9 2.6E-07 5.6E-12 88.4 20.0 291 62-417 14-331 (517)
64 PF12569 NARP1: NMDA receptor- 98.9 1.3E-06 2.9E-11 83.6 24.5 280 141-448 11-330 (517)
65 PF12854 PPR_1: PPR repeat 98.9 4.1E-09 8.9E-14 60.0 4.4 33 385-417 1-33 (34)
66 KOG1174 Anaphase-promoting com 98.8 2.8E-06 6E-11 75.7 22.7 290 132-451 192-499 (564)
67 KOG1129 TPR repeat-containing 98.8 5.8E-08 1.3E-12 83.5 12.0 222 138-390 227-461 (478)
68 KOG1173 Anaphase-promoting com 98.8 2.2E-06 4.7E-11 79.4 22.8 399 13-436 19-535 (611)
69 PF12854 PPR_1: PPR repeat 98.8 3.4E-09 7.3E-14 60.3 2.9 33 169-201 2-34 (34)
70 KOG3785 Uncharacterized conser 98.8 7.5E-06 1.6E-10 71.6 23.3 92 361-453 398-491 (557)
71 KOG0547 Translocase of outer m 98.7 1E-05 2.2E-10 73.7 23.8 330 86-450 118-489 (606)
72 KOG2376 Signal recognition par 98.7 2.7E-05 5.9E-10 72.7 26.8 389 17-443 19-511 (652)
73 KOG3785 Uncharacterized conser 98.7 1.5E-06 3.3E-11 75.8 17.1 382 17-427 29-498 (557)
74 KOG1156 N-terminal acetyltrans 98.7 1.9E-05 4.2E-10 74.5 24.6 292 132-453 141-469 (700)
75 COG3063 PilF Tfp pilus assembl 98.7 4.4E-06 9.5E-11 68.8 18.0 190 237-453 38-236 (250)
76 KOG2047 mRNA splicing factor [ 98.7 0.00014 3E-09 68.9 29.5 162 287-457 389-583 (835)
77 PRK11189 lipoprotein NlpI; Pro 98.6 3.2E-06 7E-11 76.4 18.4 226 147-428 39-275 (296)
78 KOG1129 TPR repeat-containing 98.6 6E-07 1.3E-11 77.4 11.7 220 178-422 227-461 (478)
79 KOG3616 Selective LIM binding 98.6 2.7E-06 5.9E-11 81.0 16.5 177 220-444 749-929 (1636)
80 KOG4162 Predicted calmodulin-b 98.6 6.2E-05 1.4E-09 72.6 25.6 330 79-449 319-780 (799)
81 PRK11189 lipoprotein NlpI; Pro 98.6 1.4E-05 3.1E-10 72.2 20.1 214 97-385 40-265 (296)
82 COG3063 PilF Tfp pilus assembl 98.6 9.7E-06 2.1E-10 66.8 16.5 203 178-428 39-245 (250)
83 cd05804 StaR_like StaR_like; a 98.5 0.00011 2.3E-09 68.8 26.4 298 85-451 8-335 (355)
84 KOG1156 N-terminal acetyltrans 98.5 2.7E-05 6E-10 73.5 21.6 359 20-417 51-508 (700)
85 KOG1174 Anaphase-promoting com 98.5 4.8E-05 1E-09 68.1 20.9 298 79-423 190-504 (564)
86 KOG3616 Selective LIM binding 98.5 2.1E-05 4.6E-10 75.2 19.9 220 180-448 738-962 (1636)
87 PF04733 Coatomer_E: Coatomer 98.5 1E-05 2.2E-10 72.2 17.0 138 294-443 111-255 (290)
88 KOG0985 Vesicle coat protein c 98.5 0.00021 4.5E-09 71.1 26.5 299 53-417 984-1305(1666)
89 KOG2047 mRNA splicing factor [ 98.5 0.00098 2.1E-08 63.4 29.2 382 55-449 138-719 (835)
90 KOG3617 WD40 and TPR repeat-co 98.4 0.00013 2.8E-09 70.9 23.1 246 46-352 717-994 (1416)
91 cd05804 StaR_like StaR_like; a 98.4 0.00011 2.3E-09 68.9 22.9 285 62-417 16-333 (355)
92 KOG2376 Signal recognition par 98.4 0.00028 6E-09 66.2 24.5 175 57-263 15-204 (652)
93 PF04733 Coatomer_E: Coatomer 98.4 2.9E-05 6.3E-10 69.3 16.9 241 143-422 10-268 (290)
94 KOG1070 rRNA processing protei 98.4 4.6E-05 1E-09 78.0 19.3 220 170-410 1454-1690(1710)
95 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.6E-11 50.6 4.5 35 357-391 1-35 (35)
96 KOG4162 Predicted calmodulin-b 98.3 0.00014 3E-09 70.3 20.3 122 287-417 652-780 (799)
97 KOG3617 WD40 and TPR repeat-co 98.3 0.00063 1.4E-08 66.4 23.7 219 11-261 758-994 (1416)
98 KOG1128 Uncharacterized conser 98.3 3.3E-05 7.2E-10 74.0 14.7 90 327-417 521-613 (777)
99 PF13812 PPR_3: Pentatricopept 98.2 2.3E-06 4.9E-11 49.0 4.1 34 356-389 1-34 (34)
100 PRK04841 transcriptional regul 98.2 0.0011 2.4E-08 70.4 27.2 304 137-452 412-760 (903)
101 KOG0985 Vesicle coat protein c 98.2 0.0016 3.4E-08 65.2 25.0 267 132-446 982-1302(1666)
102 KOG1125 TPR repeat-containing 98.2 7.3E-05 1.6E-09 69.8 15.2 237 62-342 295-559 (579)
103 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.7E-11 49.1 3.9 35 135-174 1-35 (35)
104 KOG1914 mRNA cleavage and poly 98.2 0.0048 1E-07 57.7 26.2 125 287-417 368-498 (656)
105 KOG4340 Uncharacterized conser 98.2 0.0017 3.6E-08 56.0 21.4 178 62-266 20-210 (459)
106 KOG1125 TPR repeat-containing 98.1 7E-05 1.5E-09 69.9 13.6 244 183-442 294-561 (579)
107 TIGR03302 OM_YfiO outer membra 98.1 0.00016 3.4E-09 63.3 15.4 51 396-446 171-226 (235)
108 TIGR03302 OM_YfiO outer membra 98.1 0.00023 4.9E-09 62.2 15.9 127 287-417 72-229 (235)
109 PRK04841 transcriptional regul 98.1 0.0022 4.7E-08 68.2 26.1 328 62-417 384-757 (903)
110 PF13812 PPR_3: Pentatricopept 98.0 6.2E-06 1.3E-10 47.2 3.6 33 135-172 2-34 (34)
111 KOG1127 TPR repeat-containing 98.0 0.00041 9E-09 69.0 17.6 151 284-443 774-943 (1238)
112 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 8.9E-05 1.9E-09 68.6 12.5 113 333-447 177-292 (395)
113 KOG1070 rRNA processing protei 98.0 0.00083 1.8E-08 69.3 19.9 237 67-345 1440-1691(1710)
114 PRK14720 transcript cleavage f 98.0 0.0015 3.2E-08 66.5 21.4 166 131-353 28-197 (906)
115 KOG0624 dsRNA-activated protei 98.0 0.00047 1E-08 60.5 15.3 176 54-263 68-252 (504)
116 PF01535 PPR: PPR repeat; Int 98.0 1.1E-05 2.5E-10 44.9 3.6 31 357-387 1-31 (31)
117 KOG0548 Molecular co-chaperone 97.9 0.0017 3.7E-08 60.5 19.0 101 333-435 366-471 (539)
118 KOG1128 Uncharacterized conser 97.9 0.00059 1.3E-08 65.8 16.1 226 137-403 401-635 (777)
119 PRK15359 type III secretion sy 97.9 9.8E-05 2.1E-09 58.7 9.2 98 328-427 27-129 (144)
120 COG5010 TadD Flp pilus assembl 97.9 0.0011 2.3E-08 56.2 15.4 156 238-417 70-228 (257)
121 PRK15359 type III secretion sy 97.9 0.00017 3.6E-09 57.4 10.2 104 346-451 14-120 (144)
122 COG4783 Putative Zn-dependent 97.9 0.0022 4.7E-08 59.3 18.1 158 282-449 271-434 (484)
123 KOG1127 TPR repeat-containing 97.9 0.001 2.2E-08 66.3 16.9 268 171-448 593-909 (1238)
124 KOG3081 Vesicle coat complex C 97.8 0.0042 9.1E-08 52.8 17.6 137 294-442 117-260 (299)
125 PF09976 TPR_21: Tetratricopep 97.8 0.00061 1.3E-08 54.4 12.5 121 327-448 14-143 (145)
126 KOG0624 dsRNA-activated protei 97.8 0.013 2.8E-07 51.8 21.0 278 140-451 44-369 (504)
127 KOG4340 Uncharacterized conser 97.8 0.0042 9.1E-08 53.6 17.7 319 84-447 11-370 (459)
128 PRK14720 transcript cleavage f 97.8 0.00089 1.9E-08 68.0 15.6 193 11-264 32-253 (906)
129 COG5010 TadD Flp pilus assembl 97.8 0.0023 4.9E-08 54.3 15.4 150 289-446 70-225 (257)
130 PRK15179 Vi polysaccharide bio 97.8 0.0017 3.6E-08 65.2 17.3 130 320-451 81-216 (694)
131 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 6.9E-10 43.0 3.1 26 135-160 1-26 (31)
132 PRK10370 formate-dependent nit 97.8 0.00038 8.2E-09 58.7 10.8 114 65-201 52-171 (198)
133 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00057 1.2E-08 63.3 12.8 122 287-419 171-296 (395)
134 KOG1914 mRNA cleavage and poly 97.7 0.042 9.1E-07 51.7 25.0 75 132-213 18-94 (656)
135 PRK10370 formate-dependent nit 97.7 0.0012 2.5E-08 55.7 12.7 95 283-384 71-172 (198)
136 COG4783 Putative Zn-dependent 97.6 0.034 7.3E-07 51.7 21.8 130 246-417 318-451 (484)
137 PF10037 MRP-S27: Mitochondria 97.6 0.00032 6.8E-09 65.3 9.0 118 319-436 60-186 (429)
138 PLN02789 farnesyltranstransfer 97.6 0.0073 1.6E-07 54.9 17.4 197 62-298 47-268 (320)
139 TIGR02552 LcrH_SycD type III s 97.6 0.00054 1.2E-08 53.9 8.9 97 83-202 17-113 (135)
140 TIGR02552 LcrH_SycD type III s 97.6 0.00057 1.2E-08 53.8 8.7 85 331-417 23-111 (135)
141 PLN02789 farnesyltranstransfer 97.5 0.013 2.7E-07 53.4 18.2 125 92-265 46-173 (320)
142 PF08579 RPM2: Mitochondrial r 97.5 0.0018 3.9E-08 47.3 9.9 90 287-404 27-117 (120)
143 PRK15179 Vi polysaccharide bio 97.5 0.0056 1.2E-07 61.6 17.1 141 282-431 83-230 (694)
144 KOG3081 Vesicle coat complex C 97.5 0.019 4.1E-07 49.0 17.4 238 141-417 15-268 (299)
145 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.016 3.6E-07 53.1 17.8 146 234-404 397-548 (660)
146 PF12895 Apc3: Anaphase-promot 97.5 0.00026 5.7E-09 50.4 5.4 80 369-448 2-83 (84)
147 PF04840 Vps16_C: Vps16, C-ter 97.4 0.1 2.2E-06 47.5 26.2 140 286-450 178-317 (319)
148 PF08579 RPM2: Mitochondrial r 97.4 0.0021 4.6E-08 47.0 8.8 76 360-435 29-116 (120)
149 PF09976 TPR_21: Tetratricopep 97.4 0.0034 7.3E-08 50.1 11.0 49 332-380 92-142 (145)
150 KOG0548 Molecular co-chaperone 97.3 0.023 5.1E-07 53.2 17.1 101 91-215 10-114 (539)
151 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.003 6.5E-08 48.2 10.0 88 328-417 5-102 (119)
152 cd00189 TPR Tetratricopeptide 97.3 0.0029 6.4E-08 45.5 9.5 90 359-450 3-95 (100)
153 PF06239 ECSIT: Evolutionarily 97.3 0.00088 1.9E-08 55.3 6.8 98 71-189 33-153 (228)
154 PF14559 TPR_19: Tetratricopep 97.3 0.0017 3.6E-08 44.0 7.1 62 367-430 2-65 (68)
155 PF10037 MRP-S27: Mitochondria 97.3 0.0015 3.2E-08 61.0 8.8 100 82-200 65-164 (429)
156 PF04840 Vps16_C: Vps16, C-ter 97.2 0.15 3.2E-06 46.4 22.3 109 327-448 179-287 (319)
157 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0028 6.1E-08 48.4 9.1 93 287-384 4-104 (119)
158 KOG0553 TPR repeat-containing 97.2 0.0019 4.1E-08 55.9 8.4 95 295-398 91-189 (304)
159 cd00189 TPR Tetratricopeptide 97.1 0.0018 4E-08 46.7 6.9 85 331-417 6-94 (100)
160 PF14938 SNAP: Soluble NSF att 97.1 0.039 8.5E-07 49.6 16.4 125 293-417 122-263 (282)
161 PF05843 Suf: Suppressor of fo 97.1 0.0036 7.8E-08 56.0 9.4 143 235-401 2-150 (280)
162 PF12895 Apc3: Anaphase-promot 97.1 0.00043 9.4E-09 49.2 2.9 77 65-159 2-83 (84)
163 KOG3060 Uncharacterized conser 97.1 0.036 7.9E-07 47.0 14.0 143 288-438 55-203 (289)
164 PF06239 ECSIT: Evolutionarily 97.0 0.0086 1.9E-07 49.7 9.9 102 232-340 45-153 (228)
165 PLN03088 SGT1, suppressor of 97.0 0.004 8.7E-08 57.8 9.0 90 335-426 12-106 (356)
166 PF14938 SNAP: Soluble NSF att 97.0 0.0062 1.3E-07 54.7 9.8 184 240-435 41-247 (282)
167 KOG2053 Mitochondrial inherita 97.0 0.46 1E-05 47.8 22.7 215 94-353 20-254 (932)
168 PRK15363 pathogenicity island 96.9 0.0035 7.7E-08 49.4 6.8 82 62-160 45-129 (157)
169 KOG2053 Mitochondrial inherita 96.9 0.55 1.2E-05 47.3 28.9 210 20-265 19-257 (932)
170 KOG1538 Uncharacterized conser 96.9 0.073 1.6E-06 51.2 16.2 264 79-417 552-830 (1081)
171 PRK15363 pathogenicity island 96.9 0.037 8.1E-07 43.8 12.0 86 330-417 40-129 (157)
172 PF05843 Suf: Suppressor of fo 96.8 0.014 3E-07 52.2 10.6 138 286-431 2-148 (280)
173 PF13432 TPR_16: Tetratricopep 96.8 0.0039 8.5E-08 41.6 5.3 54 362-417 3-57 (65)
174 PF12688 TPR_5: Tetratrico pep 96.8 0.038 8.3E-07 42.0 11.0 89 362-450 7-102 (120)
175 PRK02603 photosystem I assembl 96.7 0.014 3E-07 48.1 9.3 85 84-190 36-122 (172)
176 PRK02603 photosystem I assembl 96.7 0.026 5.6E-07 46.5 10.8 83 284-371 34-121 (172)
177 PRK10153 DNA-binding transcrip 96.7 0.036 7.9E-07 54.0 13.2 137 282-427 334-490 (517)
178 COG4700 Uncharacterized protei 96.7 0.14 3E-06 41.5 13.8 129 282-417 86-219 (251)
179 CHL00033 ycf3 photosystem I as 96.6 0.015 3.3E-07 47.6 8.8 85 328-414 38-136 (168)
180 KOG0553 TPR repeat-containing 96.5 0.018 3.9E-07 50.1 8.9 99 334-434 90-193 (304)
181 PF12921 ATP13: Mitochondrial 96.5 0.024 5.2E-07 43.5 8.7 96 325-436 2-101 (126)
182 PF03704 BTAD: Bacterial trans 96.5 0.0068 1.5E-07 48.4 6.1 77 85-178 64-140 (146)
183 PLN03088 SGT1, suppressor of 96.5 0.032 6.9E-07 51.9 11.1 87 363-451 9-98 (356)
184 CHL00033 ycf3 photosystem I as 96.5 0.025 5.5E-07 46.3 9.3 93 285-382 35-139 (168)
185 COG3898 Uncharacterized membra 96.5 0.68 1.5E-05 42.2 18.4 82 62-160 130-214 (531)
186 KOG3060 Uncharacterized conser 96.4 0.033 7E-07 47.3 9.4 64 132-201 118-181 (289)
187 PF13414 TPR_11: TPR repeat; P 96.4 0.0049 1.1E-07 41.7 3.9 58 357-416 4-63 (69)
188 KOG2041 WD40 repeat protein [G 96.3 0.38 8.2E-06 47.0 16.9 69 131-205 689-765 (1189)
189 PF12921 ATP13: Mitochondrial 96.3 0.03 6.4E-07 43.0 8.1 102 82-189 1-103 (126)
190 KOG2280 Vacuolar assembly/sort 96.3 1.3 2.9E-05 43.8 23.8 112 326-449 685-796 (829)
191 PF14559 TPR_19: Tetratricopep 96.3 0.009 1.9E-07 40.3 4.6 48 96-160 4-51 (68)
192 KOG1130 Predicted G-alpha GTPa 96.2 0.023 4.9E-07 51.5 7.9 265 91-385 25-344 (639)
193 KOG1130 Predicted G-alpha GTPa 96.1 0.038 8.3E-07 50.2 8.8 125 327-451 197-343 (639)
194 PF03704 BTAD: Bacterial trans 96.1 0.037 8E-07 44.1 8.2 77 236-329 64-140 (146)
195 PF13371 TPR_9: Tetratricopept 96.1 0.027 5.9E-07 38.5 6.4 59 364-424 3-63 (73)
196 PF12688 TPR_5: Tetratrico pep 96.0 0.052 1.1E-06 41.2 8.0 107 89-216 7-117 (120)
197 PRK10153 DNA-binding transcrip 96.0 0.16 3.5E-06 49.6 13.2 133 319-451 331-481 (517)
198 PRK10866 outer membrane biogen 95.9 0.29 6.3E-06 42.7 13.5 57 361-417 180-238 (243)
199 COG4700 Uncharacterized protei 95.9 0.53 1.1E-05 38.2 13.3 124 318-443 82-213 (251)
200 PF07079 DUF1347: Protein of u 95.9 1.5 3.3E-05 40.9 25.0 362 62-448 16-520 (549)
201 KOG1538 Uncharacterized conser 95.9 0.28 6.1E-06 47.4 13.7 19 90-108 639-657 (1081)
202 KOG2041 WD40 repeat protein [G 95.8 0.79 1.7E-05 45.0 16.6 140 97-258 748-902 (1189)
203 KOG2796 Uncharacterized conser 95.8 0.12 2.6E-06 44.2 9.8 143 85-243 179-328 (366)
204 PF13424 TPR_12: Tetratricopep 95.7 0.021 4.6E-07 39.7 4.7 65 285-350 5-71 (78)
205 PF13414 TPR_11: TPR repeat; P 95.7 0.016 3.6E-07 39.1 3.9 62 82-160 2-64 (69)
206 PF13424 TPR_12: Tetratricopep 95.6 0.018 3.8E-07 40.1 3.9 57 359-415 8-70 (78)
207 KOG2796 Uncharacterized conser 95.6 0.72 1.6E-05 39.7 13.8 140 234-396 177-324 (366)
208 smart00299 CLH Clathrin heavy 95.6 0.84 1.8E-05 35.9 14.7 130 286-436 8-138 (140)
209 PRK10866 outer membrane biogen 95.6 1.4 3.1E-05 38.5 18.0 174 243-446 41-235 (243)
210 PF07079 DUF1347: Protein of u 95.6 2.1 4.5E-05 40.1 17.6 254 185-446 17-321 (549)
211 PRK10803 tol-pal system protei 95.6 0.2 4.3E-06 44.2 10.9 89 327-417 145-243 (263)
212 PF13432 TPR_16: Tetratricopep 95.5 0.05 1.1E-06 36.2 5.8 55 397-451 3-59 (65)
213 PRK10803 tol-pal system protei 95.5 0.065 1.4E-06 47.2 7.9 99 287-390 145-249 (263)
214 COG3898 Uncharacterized membra 95.5 1.9 4.2E-05 39.4 25.8 292 136-457 84-397 (531)
215 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.3 4.9E-05 39.8 21.5 89 358-447 399-490 (660)
216 COG4235 Cytochrome c biogenesi 95.1 0.18 4E-06 44.2 9.0 27 284-310 155-181 (287)
217 PF00637 Clathrin: Region in C 94.9 0.011 2.4E-07 46.9 1.1 127 139-300 12-140 (143)
218 COG4235 Cytochrome c biogenesi 94.8 0.51 1.1E-05 41.5 11.0 106 324-431 155-268 (287)
219 PF13525 YfiO: Outer membrane 94.8 1.5 3.2E-05 37.2 13.9 166 241-440 12-195 (203)
220 KOG1585 Protein required for f 94.7 1.2 2.7E-05 37.9 12.4 202 176-415 33-251 (308)
221 PF00637 Clathrin: Region in C 94.6 0.0053 1.1E-07 48.8 -1.4 130 290-439 12-141 (143)
222 KOG3941 Intermediate in Toll s 94.6 0.13 2.9E-06 44.4 6.7 101 79-200 63-185 (406)
223 PF13371 TPR_9: Tetratricopept 94.6 0.095 2.1E-06 35.7 5.0 53 91-160 3-55 (73)
224 PF07035 Mic1: Colon cancer-as 94.5 2 4.4E-05 34.7 14.4 116 316-439 20-136 (167)
225 KOG1920 IkappaB kinase complex 94.5 3.9 8.3E-05 43.1 17.7 114 282-417 932-1052(1265)
226 KOG1920 IkappaB kinase complex 94.5 6.7 0.00014 41.4 19.3 293 140-448 683-1024(1265)
227 PF04097 Nic96: Nup93/Nic96; 94.4 1 2.2E-05 45.3 13.6 351 53-422 110-536 (613)
228 COG4105 ComL DNA uptake lipopr 94.1 3.5 7.6E-05 35.6 15.2 153 244-417 44-230 (254)
229 PF04053 Coatomer_WDAD: Coatom 94.1 0.8 1.7E-05 43.8 11.7 102 295-418 328-429 (443)
230 PF09613 HrpB1_HrpK: Bacterial 94.0 1.2 2.6E-05 35.5 10.5 48 337-384 22-72 (160)
231 PRK15331 chaperone protein Sic 94.0 0.19 4.2E-06 40.0 6.1 82 62-160 47-131 (165)
232 smart00299 CLH Clathrin heavy 93.8 2.6 5.6E-05 33.1 13.0 128 236-403 9-137 (140)
233 KOG3941 Intermediate in Toll s 93.8 0.94 2E-05 39.4 10.1 114 283-417 65-185 (406)
234 PF13281 DUF4071: Domain of un 93.5 6.4 0.00014 36.5 17.9 165 235-417 142-331 (374)
235 KOG0550 Molecular chaperone (D 93.3 6.9 0.00015 36.3 15.3 282 91-403 57-369 (486)
236 PLN03098 LPA1 LOW PSII ACCUMUL 93.2 0.37 7.9E-06 45.2 7.4 61 355-417 74-138 (453)
237 KOG0550 Molecular chaperone (D 92.9 3.9 8.5E-05 37.8 13.1 162 283-452 166-350 (486)
238 COG3629 DnrI DNA-binding trans 92.9 0.6 1.3E-05 41.2 8.0 82 85-183 155-236 (280)
239 TIGR02561 HrpB1_HrpK type III 92.9 2 4.4E-05 33.7 9.8 19 366-384 54-72 (153)
240 PLN03098 LPA1 LOW PSII ACCUMUL 92.8 0.41 8.8E-06 44.9 7.1 62 324-385 74-141 (453)
241 PF13525 YfiO: Outer membrane 92.1 0.65 1.4E-05 39.3 7.2 50 361-412 146-199 (203)
242 KOG2610 Uncharacterized conser 91.9 2.6 5.6E-05 37.8 10.4 149 246-417 115-273 (491)
243 PF09205 DUF1955: Domain of un 91.7 1 2.3E-05 34.3 6.8 135 139-310 5-145 (161)
244 PRK15331 chaperone protein Sic 91.5 0.47 1E-05 37.9 5.1 89 91-202 45-133 (165)
245 PF10602 RPN7: 26S proteasome 91.3 1.7 3.7E-05 35.8 8.6 92 326-417 37-139 (177)
246 PF13762 MNE1: Mitochondrial s 91.1 3.5 7.6E-05 32.4 9.5 89 316-404 28-128 (145)
247 PF04053 Coatomer_WDAD: Coatom 91.0 2.2 4.8E-05 40.9 10.1 132 285-447 295-426 (443)
248 PF13428 TPR_14: Tetratricopep 90.9 0.74 1.6E-05 27.6 4.7 30 359-390 4-33 (44)
249 COG3629 DnrI DNA-binding trans 90.8 2.4 5.2E-05 37.5 9.3 83 235-334 154-236 (280)
250 KOG2066 Vacuolar assembly/sort 90.8 20 0.00044 36.2 22.9 155 141-308 363-528 (846)
251 KOG1585 Protein required for f 90.7 8 0.00017 33.2 11.7 27 286-312 32-58 (308)
252 PF10300 DUF3808: Protein of u 90.4 18 0.0004 35.2 16.0 189 210-417 163-373 (468)
253 PF13512 TPR_18: Tetratricopep 90.4 1.9 4.1E-05 33.7 7.4 69 335-405 20-96 (142)
254 KOG0543 FKBP-type peptidyl-pro 90.3 1 2.2E-05 41.4 6.8 76 356-433 257-334 (397)
255 PF13170 DUF4003: Protein of u 89.9 12 0.00026 33.8 13.3 30 150-184 78-107 (297)
256 PF13431 TPR_17: Tetratricopep 89.9 0.41 8.9E-06 26.9 2.6 25 387-411 8-33 (34)
257 PF13176 TPR_7: Tetratricopept 89.8 0.65 1.4E-05 26.4 3.5 23 394-416 2-24 (36)
258 COG1747 Uncharacterized N-term 89.8 16 0.00036 35.0 14.1 160 79-264 62-235 (711)
259 PF13170 DUF4003: Protein of u 89.5 10 0.00022 34.3 12.5 146 300-448 73-242 (297)
260 KOG0543 FKBP-type peptidyl-pro 89.4 3.8 8.2E-05 37.8 9.7 123 293-417 216-352 (397)
261 PF13929 mRNA_stabil: mRNA sta 89.1 5.5 0.00012 35.2 10.0 122 58-199 134-263 (292)
262 PRK11906 transcriptional regul 88.8 9.6 0.00021 36.2 12.0 157 286-449 252-433 (458)
263 KOG1941 Acetylcholine receptor 88.7 5.7 0.00012 36.1 10.0 118 331-448 128-271 (518)
264 PF13176 TPR_7: Tetratricopept 88.6 0.86 1.9E-05 25.9 3.4 27 358-384 1-27 (36)
265 KOG2280 Vacuolar assembly/sort 88.3 31 0.00066 34.9 23.0 309 62-416 447-795 (829)
266 COG3118 Thioredoxin domain-con 88.3 4.6 0.0001 35.7 9.0 146 291-445 140-294 (304)
267 PF13428 TPR_14: Tetratricopep 88.3 0.75 1.6E-05 27.6 3.2 31 84-114 2-32 (44)
268 PF13281 DUF4071: Domain of un 88.3 22 0.00048 33.1 18.3 82 86-185 144-228 (374)
269 PF07035 Mic1: Colon cancer-as 87.9 13 0.00028 30.1 13.0 91 166-260 21-115 (167)
270 PF10300 DUF3808: Protein of u 87.6 1.3 2.9E-05 42.9 6.1 109 24-161 247-374 (468)
271 COG4105 ComL DNA uptake lipopr 87.3 19 0.00041 31.3 12.2 59 56-114 36-102 (254)
272 KOG4555 TPR repeat-containing 87.3 6.5 0.00014 30.1 8.1 83 334-417 52-141 (175)
273 COG4649 Uncharacterized protei 87.1 12 0.00027 30.3 9.9 118 295-417 68-193 (221)
274 KOG2114 Vacuolar assembly/sort 87.0 36 0.00078 34.9 15.1 174 243-453 377-551 (933)
275 COG4649 Uncharacterized protei 86.3 16 0.00036 29.6 11.3 131 325-456 59-200 (221)
276 PF09205 DUF1955: Domain of un 86.2 13 0.00029 28.6 13.5 56 361-417 91-146 (161)
277 PF00515 TPR_1: Tetratricopept 86.2 1.2 2.7E-05 24.6 3.2 31 358-390 3-33 (34)
278 KOG2114 Vacuolar assembly/sort 86.2 43 0.00094 34.4 19.1 53 360-416 709-761 (933)
279 COG1729 Uncharacterized protei 86.2 11 0.00023 33.0 10.1 90 327-417 144-241 (262)
280 PF04184 ST7: ST7 protein; In 86.0 14 0.0003 35.4 11.3 19 246-264 212-230 (539)
281 COG0457 NrfG FOG: TPR repeat [ 85.9 20 0.00043 30.1 17.5 49 367-417 178-228 (291)
282 PF10579 Rapsyn_N: Rapsyn N-te 85.4 3 6.5E-05 28.6 5.1 46 368-413 18-65 (80)
283 COG1729 Uncharacterized protei 84.8 13 0.00029 32.5 10.0 91 208-312 145-242 (262)
284 PF11207 DUF2989: Protein of u 84.7 11 0.00025 31.4 9.1 79 363-443 114-198 (203)
285 PRK09687 putative lyase; Provi 84.7 29 0.00063 31.1 22.1 49 201-249 33-83 (280)
286 PF13929 mRNA_stabil: mRNA sta 84.6 19 0.00041 32.0 10.8 60 319-378 196-260 (292)
287 COG1747 Uncharacterized N-term 84.6 40 0.00087 32.6 16.5 176 232-435 64-251 (711)
288 PRK09687 putative lyase; Provi 84.1 31 0.00067 30.9 22.4 136 283-434 140-278 (280)
289 PF13431 TPR_17: Tetratricopep 84.1 0.97 2.1E-05 25.3 2.0 24 132-155 11-34 (34)
290 PF13512 TPR_18: Tetratricopep 83.6 10 0.00022 29.7 8.0 53 62-114 20-78 (142)
291 KOG4555 TPR repeat-containing 83.6 7.9 0.00017 29.7 7.0 51 244-311 53-103 (175)
292 cd00923 Cyt_c_Oxidase_Va Cytoc 83.5 4 8.7E-05 29.3 5.2 44 101-160 25-68 (103)
293 KOG1464 COP9 signalosome, subu 83.0 32 0.00068 30.2 14.7 136 52-201 23-172 (440)
294 PF10602 RPN7: 26S proteasome 83.0 10 0.00022 31.2 8.4 61 236-310 38-98 (177)
295 PF08631 SPO22: Meiosis protei 82.7 35 0.00076 30.5 18.1 151 63-231 4-185 (278)
296 PF07719 TPR_2: Tetratricopept 82.5 2.2 4.8E-05 23.4 3.2 26 359-384 4-29 (34)
297 KOG4570 Uncharacterized conser 82.4 4 8.7E-05 36.3 5.9 97 319-417 58-161 (418)
298 PF04184 ST7: ST7 protein; In 82.4 19 0.00042 34.5 10.6 79 360-438 263-346 (539)
299 COG3947 Response regulator con 82.1 4.3 9.3E-05 35.7 5.9 74 87-177 283-356 (361)
300 PF00515 TPR_1: Tetratricopept 82.1 1.5 3.3E-05 24.2 2.4 25 393-417 3-27 (34)
301 KOG4570 Uncharacterized conser 81.6 11 0.00025 33.6 8.3 97 355-453 63-165 (418)
302 COG4455 ImpE Protein of avirul 81.5 9.9 0.00022 32.1 7.5 74 327-400 3-81 (273)
303 PF02259 FAT: FAT domain; Int 81.2 46 0.00099 30.8 13.6 53 140-201 4-56 (352)
304 PF09613 HrpB1_HrpK: Bacterial 81.0 6.6 0.00014 31.4 6.2 87 17-113 17-107 (160)
305 PF13374 TPR_10: Tetratricopep 80.8 3.5 7.5E-05 23.9 3.8 26 392-417 3-28 (42)
306 PF07719 TPR_2: Tetratricopept 80.1 2 4.2E-05 23.6 2.4 25 393-417 3-27 (34)
307 COG3118 Thioredoxin domain-con 79.9 44 0.00096 29.8 13.4 142 242-405 142-286 (304)
308 PF11207 DUF2989: Protein of u 79.8 10 0.00022 31.6 7.2 82 244-345 117-198 (203)
309 PF07721 TPR_4: Tetratricopept 79.7 3.9 8.5E-05 21.1 3.2 21 395-415 5-25 (26)
310 PF13374 TPR_10: Tetratricopep 79.6 4.8 0.0001 23.2 4.1 29 285-313 2-30 (42)
311 PF02284 COX5A: Cytochrome c o 79.3 4.5 9.8E-05 29.3 4.3 30 131-160 42-71 (108)
312 COG4785 NlpI Lipoprotein NlpI, 78.5 21 0.00047 30.1 8.5 178 62-265 75-268 (297)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 78.2 13 0.00028 26.8 6.2 58 374-431 25-84 (103)
314 COG2976 Uncharacterized protei 77.8 34 0.00074 28.4 9.4 89 362-453 95-189 (207)
315 PF13181 TPR_8: Tetratricopept 77.6 3 6.4E-05 23.0 2.6 26 359-384 4-29 (34)
316 COG5159 RPN6 26S proteasome re 77.4 50 0.0011 29.3 10.8 169 139-345 8-185 (421)
317 KOG0276 Vesicle coat complex C 77.0 24 0.00051 34.7 9.5 102 295-418 647-748 (794)
318 COG0457 NrfG FOG: TPR repeat [ 75.5 46 0.001 27.7 16.1 161 285-451 59-230 (291)
319 PF02284 COX5A: Cytochrome c o 75.0 11 0.00024 27.4 5.3 44 374-417 28-71 (108)
320 KOG2610 Uncharacterized conser 74.9 67 0.0015 29.3 15.0 152 296-455 114-279 (491)
321 KOG0276 Vesicle coat complex C 72.0 70 0.0015 31.7 11.2 131 286-447 615-745 (794)
322 PF02259 FAT: FAT domain; Int 72.0 83 0.0018 29.0 16.7 69 232-313 144-212 (352)
323 TIGR03504 FimV_Cterm FimV C-te 71.3 11 0.00023 22.7 3.9 26 361-386 4-29 (44)
324 COG3947 Response regulator con 71.2 77 0.0017 28.3 15.6 46 250-313 149-194 (361)
325 TIGR02561 HrpB1_HrpK type III 71.1 27 0.00058 27.6 7.0 64 22-94 22-87 (153)
326 PRK13800 putative oxidoreducta 70.8 1.6E+02 0.0034 31.8 24.2 238 194-450 624-879 (897)
327 COG5159 RPN6 26S proteasome re 69.3 83 0.0018 28.0 11.0 161 239-409 8-183 (421)
328 PF11848 DUF3368: Domain of un 69.0 11 0.00024 23.1 3.8 37 242-278 10-46 (48)
329 KOG1941 Acetylcholine receptor 67.3 35 0.00076 31.4 7.8 128 290-417 127-272 (518)
330 PF14669 Asp_Glu_race_2: Putat 66.4 71 0.0015 26.5 8.7 61 139-199 137-206 (233)
331 PF13174 TPR_6: Tetratricopept 66.2 5.9 0.00013 21.4 2.0 24 361-384 5-28 (33)
332 KOG0991 Replication factor C, 66.0 87 0.0019 27.1 9.4 69 366-436 202-285 (333)
333 PRK11906 transcriptional regul 66.0 1.3E+02 0.0028 29.0 13.7 25 206-230 252-285 (458)
334 PF14689 SPOB_a: Sensor_kinase 65.9 9.7 0.00021 24.9 3.3 44 372-417 6-49 (62)
335 PF08311 Mad3_BUB1_I: Mad3/BUB 65.6 49 0.0011 25.4 7.6 44 373-416 80-124 (126)
336 KOG1464 COP9 signalosome, subu 65.3 98 0.0021 27.3 12.0 35 167-201 19-54 (440)
337 PF11846 DUF3366: Domain of un 65.1 23 0.0005 29.6 6.3 54 368-421 120-175 (193)
338 smart00028 TPR Tetratricopepti 64.9 12 0.00026 19.2 3.3 26 359-384 4-29 (34)
339 PF08311 Mad3_BUB1_I: Mad3/BUB 64.8 62 0.0013 24.8 8.6 44 252-310 81-124 (126)
340 PF04190 DUF410: Protein of un 64.2 1E+02 0.0023 27.2 11.9 122 131-263 46-170 (260)
341 COG4455 ImpE Protein of avirul 63.1 40 0.00088 28.6 6.9 56 87-159 5-60 (273)
342 TIGR03504 FimV_Cterm FimV C-te 62.0 14 0.0003 22.2 3.1 26 239-264 4-29 (44)
343 PF11848 DUF3368: Domain of un 61.9 34 0.00075 20.9 5.1 35 365-399 11-45 (48)
344 KOG4234 TPR repeat-containing 60.8 98 0.0021 26.0 8.6 89 334-424 104-202 (271)
345 PF13762 MNE1: Mitochondrial s 59.0 88 0.0019 24.7 10.4 81 166-266 29-112 (145)
346 PF08631 SPO22: Meiosis protei 58.9 1.3E+02 0.0029 26.8 21.5 156 286-448 85-271 (278)
347 PF14853 Fis1_TPR_C: Fis1 C-te 58.7 43 0.00093 21.1 5.1 31 362-394 7-37 (53)
348 PF04910 Tcf25: Transcriptiona 56.8 1.1E+02 0.0024 28.6 9.7 157 20-199 4-218 (360)
349 cd00280 TRFH Telomeric Repeat 56.8 70 0.0015 26.4 7.1 21 364-384 119-139 (200)
350 TIGR02508 type_III_yscG type I 56.6 46 0.00099 24.3 5.4 48 143-201 48-95 (115)
351 PF11838 ERAP1_C: ERAP1-like C 56.3 1.6E+02 0.0035 26.8 15.7 144 301-450 146-302 (324)
352 PRK11619 lytic murein transgly 56.2 2.4E+02 0.0053 28.9 25.9 42 178-219 133-177 (644)
353 PF06552 TOM20_plant: Plant sp 55.8 22 0.00047 29.2 4.2 60 373-434 52-124 (186)
354 PF09477 Type_III_YscG: Bacter 55.8 82 0.0018 23.3 7.1 83 97-207 20-102 (116)
355 KOG4648 Uncharacterized conser 55.7 60 0.0013 29.6 7.2 16 295-310 107-122 (536)
356 PF10579 Rapsyn_N: Rapsyn N-te 53.7 25 0.00055 24.2 3.6 47 403-449 18-69 (80)
357 KOG2396 HAT (Half-A-TPR) repea 53.7 2.2E+02 0.0048 27.7 24.3 102 345-448 448-555 (568)
358 cd08819 CARD_MDA5_2 Caspase ac 53.2 67 0.0015 22.7 5.7 66 102-194 21-86 (88)
359 PRK10564 maltose regulon perip 51.5 30 0.00065 30.9 4.7 40 359-398 260-299 (303)
360 KOG1586 Protein required for f 51.2 1.6E+02 0.0036 25.5 10.0 25 242-266 162-186 (288)
361 PRK10564 maltose regulon perip 50.4 27 0.00059 31.2 4.3 40 235-274 258-297 (303)
362 PF10366 Vps39_1: Vacuolar sor 50.4 1E+02 0.0022 22.9 8.5 27 358-384 41-67 (108)
363 PF11817 Foie-gras_1: Foie gra 50.3 65 0.0014 28.2 6.8 57 394-450 181-245 (247)
364 KOG4077 Cytochrome c oxidase, 50.2 47 0.001 25.4 4.8 30 131-160 81-110 (149)
365 PF12069 DUF3549: Protein of u 49.9 2.1E+02 0.0046 26.4 13.7 159 136-300 131-297 (340)
366 PF10366 Vps39_1: Vacuolar sor 49.7 1.1E+02 0.0023 22.8 7.3 24 288-311 42-65 (108)
367 PF01347 Vitellogenin_N: Lipop 49.5 3E+02 0.0065 28.0 19.1 170 169-352 340-531 (618)
368 PRK10941 hypothetical protein; 49.4 1.7E+02 0.0037 26.1 9.2 76 359-436 184-264 (269)
369 PRK15180 Vi polysaccharide bio 49.2 17 0.00036 34.6 3.0 91 53-160 323-417 (831)
370 KOG4648 Uncharacterized conser 48.6 39 0.00085 30.8 5.0 90 334-424 106-199 (536)
371 PF04034 DUF367: Domain of unk 48.4 1.2E+02 0.0027 23.2 7.5 53 391-443 66-119 (127)
372 KOG1586 Protein required for f 48.2 1.8E+02 0.004 25.2 9.7 16 402-417 165-180 (288)
373 PF10255 Paf67: RNA polymerase 48.2 92 0.002 29.5 7.6 101 283-383 73-191 (404)
374 COG5108 RPO41 Mitochondrial DN 48.0 1.1E+02 0.0023 30.9 8.0 70 330-402 33-114 (1117)
375 KOG2066 Vacuolar assembly/sort 47.5 3.4E+02 0.0075 28.1 20.0 143 62-206 366-537 (846)
376 KOG4234 TPR repeat-containing 46.1 67 0.0015 27.0 5.6 94 295-392 105-202 (271)
377 KOG4507 Uncharacterized conser 46.0 1.1E+02 0.0023 30.4 7.7 61 134-200 642-702 (886)
378 KOG0403 Neoplastic transformat 46.0 78 0.0017 30.1 6.6 72 139-216 514-585 (645)
379 PF14689 SPOB_a: Sensor_kinase 45.8 37 0.0008 22.2 3.5 24 361-384 28-51 (62)
380 COG2976 Uncharacterized protei 45.3 1.3E+02 0.0029 25.1 7.2 87 292-386 96-189 (207)
381 KOG2908 26S proteasome regulat 45.2 1.1E+02 0.0025 27.9 7.3 81 329-409 79-175 (380)
382 PF12862 Apc5: Anaphase-promot 44.9 56 0.0012 23.4 4.7 58 295-352 8-68 (94)
383 KOG0687 26S proteasome regulat 44.4 2.5E+02 0.0055 25.7 10.2 138 299-450 36-208 (393)
384 KOG1550 Extracellular protein 44.0 3.5E+02 0.0076 27.2 12.4 150 250-417 228-390 (552)
385 PF14853 Fis1_TPR_C: Fis1 C-te 43.9 39 0.00084 21.3 3.2 35 396-430 6-41 (53)
386 PF11846 DUF3366: Domain of un 42.7 89 0.0019 26.0 6.3 32 418-449 139-170 (193)
387 KOG4077 Cytochrome c oxidase, 42.4 1.4E+02 0.003 23.0 6.2 40 378-417 71-110 (149)
388 PF10255 Paf67: RNA polymerase 41.1 94 0.002 29.5 6.5 60 358-417 124-190 (404)
389 COG2909 MalT ATP-dependent tra 40.9 4.6E+02 0.01 27.7 18.4 220 184-416 425-684 (894)
390 PF09454 Vps23_core: Vps23 cor 40.9 55 0.0012 21.7 3.7 51 353-404 5-55 (65)
391 KOG3636 Uncharacterized conser 40.7 3.3E+02 0.0072 26.0 10.7 87 316-402 174-271 (669)
392 COG5108 RPO41 Mitochondrial DN 40.7 1.1E+02 0.0023 30.9 6.9 92 290-384 33-131 (1117)
393 KOG2422 Uncharacterized conser 39.3 3.9E+02 0.0084 26.7 10.2 110 62-189 294-431 (665)
394 KOG2300 Uncharacterized conser 39.2 3.8E+02 0.0082 26.2 16.1 179 246-438 335-543 (629)
395 KOG2297 Predicted translation 38.3 3.1E+02 0.0067 24.9 9.9 23 423-445 321-343 (412)
396 KOG2063 Vacuolar assembly/sort 38.2 5.3E+02 0.011 27.6 13.9 209 58-335 507-742 (877)
397 TIGR02270 conserved hypothetic 38.1 3.7E+02 0.008 25.8 20.3 78 172-249 98-176 (410)
398 PF12862 Apc5: Anaphase-promot 37.3 1.5E+02 0.0033 21.1 6.9 51 367-417 9-67 (94)
399 PF07163 Pex26: Pex26 protein; 36.5 1.3E+02 0.0029 26.7 6.2 87 90-197 90-181 (309)
400 smart00777 Mad3_BUB1_I Mad3/BU 36.5 93 0.002 23.9 4.8 44 373-416 80-124 (125)
401 PHA02875 ankyrin repeat protei 36.4 3.8E+02 0.0083 25.4 13.9 16 373-388 297-312 (413)
402 PF13934 ELYS: Nuclear pore co 35.8 2.9E+02 0.0062 23.8 15.4 109 318-435 72-184 (226)
403 PF02184 HAT: HAT (Half-A-TPR) 35.8 81 0.0018 17.5 3.4 25 371-397 2-26 (32)
404 TIGR02508 type_III_yscG type I 35.4 1.8E+02 0.0039 21.4 8.1 77 373-453 22-98 (115)
405 PRK02287 hypothetical protein; 34.9 2.5E+02 0.0055 22.9 7.7 55 391-445 107-162 (171)
406 PF07163 Pex26: Pex26 protein; 34.2 3.5E+02 0.0075 24.3 8.8 87 330-416 88-183 (309)
407 PF13646 HEAT_2: HEAT repeats; 33.7 1.2E+02 0.0027 20.8 5.0 50 179-228 19-69 (88)
408 TIGR02270 conserved hypothetic 33.6 4.4E+02 0.0095 25.3 21.5 232 141-418 45-279 (410)
409 KOG4334 Uncharacterized conser 32.7 54 0.0012 31.3 3.5 35 3-37 408-442 (650)
410 PF02607 B12-binding_2: B12 bi 32.2 81 0.0018 21.5 3.7 38 368-405 13-50 (79)
411 KOG3807 Predicted membrane pro 32.2 4E+02 0.0087 24.4 10.5 69 294-366 284-358 (556)
412 cd07153 Fur_like Ferric uptake 31.8 1.4E+02 0.003 22.3 5.2 49 361-409 5-53 (116)
413 smart00386 HAT HAT (Half-A-TPR 31.7 72 0.0016 16.6 2.8 17 97-113 1-17 (33)
414 PF04190 DUF410: Protein of un 31.6 3.7E+02 0.008 23.8 16.7 83 283-385 88-170 (260)
415 COG0735 Fur Fe2+/Zn2+ uptake r 31.6 2.1E+02 0.0045 22.6 6.4 50 137-191 23-72 (145)
416 PF11817 Foie-gras_1: Foie gra 31.5 83 0.0018 27.5 4.5 59 139-197 183-241 (247)
417 KOG0991 Replication factor C, 30.9 3.6E+02 0.0079 23.5 10.5 48 343-391 226-273 (333)
418 KOG4642 Chaperone-dependent E3 30.6 2.8E+02 0.0062 24.2 7.1 105 337-443 22-137 (284)
419 PF10475 DUF2450: Protein of u 30.5 1.6E+02 0.0035 26.5 6.3 83 287-379 129-220 (291)
420 PF13934 ELYS: Nuclear pore co 30.5 3.6E+02 0.0077 23.3 9.9 82 358-445 78-162 (226)
421 KOG1550 Extracellular protein 30.3 5.8E+02 0.013 25.7 18.0 111 150-265 228-359 (552)
422 PF11663 Toxin_YhaV: Toxin wit 30.2 40 0.00087 26.1 1.9 30 369-400 108-137 (140)
423 PF06552 TOM20_plant: Plant sp 29.4 3.3E+02 0.0072 22.6 9.4 52 288-339 31-83 (186)
424 KOG2168 Cullins [Cell cycle co 29.3 7E+02 0.015 26.3 15.0 57 54-110 325-386 (835)
425 KOG1498 26S proteasome regulat 29.2 5E+02 0.011 24.6 12.8 84 290-385 136-241 (439)
426 PRK15180 Vi polysaccharide bio 28.7 2.9E+02 0.0063 26.8 7.5 93 131-231 322-419 (831)
427 PF01475 FUR: Ferric uptake re 28.5 1.3E+02 0.0028 22.6 4.7 49 361-409 12-60 (120)
428 KOG0403 Neoplastic transformat 27.1 5.8E+02 0.013 24.7 18.6 55 394-448 512-568 (645)
429 smart00544 MA3 Domain in DAP-5 27.0 1.7E+02 0.0037 21.6 5.0 22 139-160 7-28 (113)
430 PF09670 Cas_Cas02710: CRISPR- 26.9 5.5E+02 0.012 24.3 10.0 53 294-352 140-196 (379)
431 PRK13800 putative oxidoreducta 26.8 8.4E+02 0.018 26.4 22.9 138 282-431 753-892 (897)
432 PF09454 Vps23_core: Vps23 cor 26.6 1.1E+02 0.0023 20.4 3.2 49 232-297 6-54 (65)
433 cd00280 TRFH Telomeric Repeat 26.4 1.9E+02 0.0041 24.0 5.2 21 332-352 118-138 (200)
434 PF00244 14-3-3: 14-3-3 protei 26.4 4.2E+02 0.0091 23.0 7.9 35 239-273 6-40 (236)
435 COG0735 Fur Fe2+/Zn2+ uptake r 26.4 3.3E+02 0.0071 21.5 6.9 50 288-342 23-72 (145)
436 COG4785 NlpI Lipoprotein NlpI, 26.3 4.2E+02 0.0092 22.8 10.5 25 327-351 239-263 (297)
437 smart00777 Mad3_BUB1_I Mad3/BU 26.0 3.1E+02 0.0067 21.1 6.7 45 251-310 80-124 (125)
438 KOG4567 GTPase-activating prot 25.8 5.1E+02 0.011 23.6 8.8 74 103-202 263-346 (370)
439 KOG4521 Nuclear pore complex, 25.4 9.6E+02 0.021 26.6 14.4 169 243-417 929-1128(1480)
440 cd08819 CARD_MDA5_2 Caspase ac 25.3 2.5E+02 0.0055 19.9 7.4 64 375-441 21-84 (88)
441 PRK09857 putative transposase; 24.9 3.3E+02 0.0072 24.6 7.2 63 394-456 209-273 (292)
442 PF07575 Nucleopor_Nup85: Nup8 24.8 4.2E+02 0.0091 26.7 8.7 23 15-37 153-175 (566)
443 PF13646 HEAT_2: HEAT repeats; 24.5 2.4E+02 0.0052 19.3 7.5 60 202-262 11-72 (88)
444 KOG4642 Chaperone-dependent E3 24.4 4.9E+02 0.011 22.8 8.6 117 295-418 20-144 (284)
445 KOG3364 Membrane protein invol 24.3 1.2E+02 0.0026 23.7 3.5 23 362-384 77-99 (149)
446 KOG3807 Predicted membrane pro 24.1 1.2E+02 0.0026 27.6 4.0 98 96-197 229-334 (556)
447 PRK14956 DNA polymerase III su 23.5 6.2E+02 0.013 24.9 9.0 89 166-270 194-284 (484)
448 KOG2908 26S proteasome regulat 23.5 6E+02 0.013 23.5 8.1 80 361-440 80-174 (380)
449 PF12926 MOZART2: Mitotic-spin 23.4 2.8E+02 0.006 19.7 6.5 24 255-278 29-52 (88)
450 PRK11639 zinc uptake transcrip 23.3 2.3E+02 0.005 23.1 5.4 34 372-405 41-74 (169)
451 KOG0890 Protein kinase of the 23.2 1.4E+03 0.03 27.7 20.4 310 62-410 1430-1765(2382)
452 PRK11639 zinc uptake transcrip 23.2 3.8E+02 0.0082 21.8 6.6 51 137-192 28-78 (169)
453 PF09797 NatB_MDM20: N-acetylt 23.2 2.9E+02 0.0063 25.9 6.8 55 133-193 216-270 (365)
454 COG2042 Uncharacterized conser 22.9 4.2E+02 0.0091 21.5 7.0 53 391-443 115-168 (179)
455 PF04124 Dor1: Dor1-like famil 22.8 5.4E+02 0.012 23.8 8.4 29 237-265 109-137 (338)
456 PF02847 MA3: MA3 domain; Int 22.5 61 0.0013 24.1 1.8 22 139-160 7-28 (113)
457 PF04762 IKI3: IKI3 family; I 22.1 4.4E+02 0.0096 28.6 8.5 192 45-260 678-927 (928)
458 PF14929 TAF1_subA: TAF RNA Po 22.1 8.1E+02 0.018 24.6 11.4 134 298-436 322-468 (547)
459 KOG1498 26S proteasome regulat 22.1 6.8E+02 0.015 23.7 14.8 85 330-417 136-238 (439)
460 PRK14956 DNA polymerase III su 21.5 7.9E+02 0.017 24.2 9.5 35 422-456 247-281 (484)
461 COG2178 Predicted RNA-binding 21.4 4E+02 0.0086 22.4 6.2 84 179-262 34-149 (204)
462 PF11663 Toxin_YhaV: Toxin wit 21.1 97 0.0021 24.1 2.5 33 296-335 106-138 (140)
463 PF06957 COPI_C: Coatomer (COP 21.1 4.1E+02 0.0088 25.5 7.1 155 291-452 124-329 (422)
464 PF03745 DUF309: Domain of unk 20.9 2.5E+02 0.0055 18.3 5.4 48 366-413 9-61 (62)
465 PRK10941 hypothetical protein; 20.7 6.1E+02 0.013 22.6 8.3 78 86-184 184-261 (269)
466 cd07153 Fur_like Ferric uptake 20.6 2.5E+02 0.0054 20.8 4.9 49 139-192 5-53 (116)
467 smart00638 LPD_N Lipoprotein N 20.0 9.1E+02 0.02 24.3 21.5 57 173-231 309-367 (574)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-64 Score=518.43 Aligned_cols=451 Identities=23% Similarity=0.318 Sum_probs=405.5
Q ss_pred CCCCCCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchh---------------------hhhhhcCCCCCceeeh
Q 036356 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV---------------------CYLFDGLFDRTIVFLD 59 (462)
Q Consensus 1 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 59 (462)
|.+.|++|+..+|..++.+|.+.+.++.+.+++..+.+.+..+ .++|+.|++||+++||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 4567899999999999999999999999999999888777543 7899999999999999
Q ss_pred hh---hccCCChhhHHHHHHhh----cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH-----HHHHhhh
Q 036356 60 LY---HLWSRTEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAV 127 (462)
Q Consensus 60 ~~---~~~~~~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-----l~~~~~~ 127 (462)
.+ |++.|++++|+++|++| ..||..||+++|++|++.++++.+.+++.+|.+.|+ .++. ++.+|++
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF--ELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC--CcccchHhHHHHHHhc
Confidence 99 99999999999999999 889999999999999999999999999999999998 5544 9999999
Q ss_pred cC------------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh------------------------------hhhh
Q 036356 128 CR------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------------------------------DYYI 165 (462)
Q Consensus 128 ~~------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~------------------------------~~~~ 165 (462)
+| ..||..+||+||.+|++.|++++|+++|++|. |..+
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99 78899999999999999999999999999995 4445
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhc----CCcchHHH
Q 036356 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS----NEENEYGT 239 (462)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~----~~~~~~~~ 239 (462)
.+.|+.||..+||+|+.+|++.|++++|.++|++|..||..+||.+|.+|++.| ++|+++|++|.. ||..||+.
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 566778888889999999999999999999999999999999999999999999 999999999977 99999999
Q ss_pred HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh---hc------------CCCCHhHHHHHHHHHHcCCChhHH
Q 036356 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR------------YQPNVTLWNAMISGYAKNGYAEEA 304 (462)
Q Consensus 240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~------------~~~~~~~~~~li~~~~~~~~~~~a 304 (462)
++.+|++.|+++.|.++++.+.+.|+.|+..++++|+.+ || ..+|..+|+.+|.+|++.|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999 33 678999999999999999999999
Q ss_pred HHHhhHHH-----------------------------HHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCC
Q 036356 305 VKLFPKWM-----------------------------DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 355 (462)
Q Consensus 305 ~~~~~~~~-----------------------------~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 355 (462)
..+|.+|. +..+.+.|+.++..++|+||++|++.|++++|.++|+.+ .+|
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d 553 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD 553 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence 99998853 233445556666666677778888899999999999998 889
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHH
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM----PIELRLSVRRALLS 431 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~ 431 (462)
..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.| ++.|+..+|+.++.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 78899999999999
Q ss_pred HHHccCChHHHHHHHHhhhhcCCCCC
Q 036356 432 AWKIPMQQWENMLQTIRGIDEGEKTD 457 (462)
Q Consensus 432 ~~~~~~~~~~a~~~~~~~~~~~~~pd 457 (462)
+|++.|+.++|...+.+| .+.||
T Consensus 634 ~l~r~G~~~eA~~~~~~m---~~~pd 656 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM---PITPD 656 (857)
T ss_pred HHHhCCCHHHHHHHHHHC---CCCCC
Confidence 999999999999888777 25555
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.4e-62 Score=501.43 Aligned_cols=423 Identities=24% Similarity=0.316 Sum_probs=369.1
Q ss_pred CCCCCCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchh---------------------hhhhhcCCCCCceeeh
Q 036356 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV---------------------CYLFDGLFDRTIVFLD 59 (462)
Q Consensus 1 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 59 (462)
|+..|+.||..||+.+|++|+..+++..+.+++..+.+.|+.+ .++|+.|+.||+++||
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhH
Confidence 4567999999999999999999999999999999999888766 8899999999999999
Q ss_pred hh---hccCCChhhHHHHHHhh----cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH-----HHHHhhh
Q 036356 60 LY---HLWSRTEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----LISLTAV 127 (462)
Q Consensus 60 ~~---~~~~~~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-----l~~~~~~ 127 (462)
++ |++.|++++|+++|++| ..||..||+.+|.+|++.|+++.|.+++..|.+.|+ .+|. ++.+|++
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~--~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHh
Confidence 99 99999999999999999 899999999999999999999999999999999999 5555 9999999
Q ss_pred cC------------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHH
Q 036356 128 CR------------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 195 (462)
Q Consensus 128 ~~------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 195 (462)
+| ..||..+||++|.+|++.|++++|+++|++| ...|+.||..||++++.+|++.|+++.|.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M-----~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-----EQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH-----HHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 99 7899999999999999999999999999999 788888888888888888888888888888
Q ss_pred HhhccC----CCCcchHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcch
Q 036356 196 FFDRTL----DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269 (462)
Q Consensus 196 ~~~~m~----~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 269 (462)
+++.|. .++..+||.+|.+|++.| ++|.++|++|.++|..+|++++.+|++.|+.++|..+|++|.+ ++.||.
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~ 489 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS 489 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence 888776 367778888888888888 8888888888888888888888888888888888888888875 588888
Q ss_pred HHHHHHHHhhc-------------------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356 270 DLLISLTAVCR-------------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330 (462)
Q Consensus 270 ~~~~~l~~~~~-------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (462)
.||+.++.+|. ..+|..++|++|++|++.|++++|.++|+. + .||..+||+
T Consensus 490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-----~-----~~d~~s~n~ 559 (857)
T PLN03077 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-----H-----EKDVVSWNI 559 (857)
T ss_pred hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh-----c-----CCChhhHHH
Confidence 88888887643 678888888888888888888888888876 3 678888888
Q ss_pred HHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHhHHHHHHHHHHhcC
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR-KHGIEPRHQHYARVVDLLARAG 405 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g 405 (462)
+|.+|++.|+.++|.++|++|. .||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.|
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 8888888888888888888886 4888888888888888888888888888888 4588888888888888888888
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 036356 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 406 ~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~ 441 (462)
++++|.+++++|+++||..+|++|+.+|...|+.+.
T Consensus 640 ~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 888888888888888888888888887765554443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.8e-62 Score=492.30 Aligned_cols=401 Identities=14% Similarity=0.133 Sum_probs=366.4
Q ss_pred CCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhhcCCCc
Q 036356 7 APNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSNEE 83 (462)
Q Consensus 7 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m~~~~~ 83 (462)
+++...|..+++.|++.|++++|.++|+.|.+.|+.+ ++...++.+ +.+.|..++|+.+|+.|..||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~---------~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~ 437 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD---------MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTL 437 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC---------chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCH
Confidence 4677789999999999999999999999999988653 566666666 8889999999999999966999
Q ss_pred chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163 (462)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (462)
.+|+.+|++|++.|+++.|.++|++|.+.|+ .||..+|++||.+|++.|++++|.++|++|
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl----------------~pD~~tynsLI~~y~k~G~vd~A~~vf~eM--- 498 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGL----------------KADCKLYTTLISTCAKSGKVDAMFEVFHEM--- 498 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHH---
Confidence 9999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC----CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc------
Q 036356 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS------ 231 (462)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~------ 231 (462)
.+.|+.||..+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.| ++|.++|++|..
T Consensus 499 --~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 499 --VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred --HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999999999996 489999999999999999 999999999953
Q ss_pred CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHH
Q 036356 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311 (462)
Q Consensus 232 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 311 (462)
||..+|++++.+|++.|++++|.++|+.|.+.|+. |+..+|+.+|.+|++.|++++|.++|.+
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~----------------p~~~tynsLI~ay~k~G~~deAl~lf~e- 639 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK----------------GTPEVYTIAVNSCSQKGDWDFALSIYDD- 639 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------CChHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence 89999999999999999999999999999999975 8888999999999999999999999998
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387 (462)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 387 (462)
|...|+.||..+|+++|++|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus 640 ----M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 640 ----MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred ----HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 7788999999999999999999999999999999887 47888999999999999999999999999998899
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCC
Q 036356 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDK 458 (462)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~ 458 (462)
.||..+|+.||.+|++.|++++|.++|++| ++.||..+|++++.+|++.|+.++|...+.+|++.|+.||.
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999988 78899999999999999999999999999999999998874
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.1e-61 Score=485.18 Aligned_cols=413 Identities=20% Similarity=0.218 Sum_probs=395.3
Q ss_pred CCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhhcCC
Q 036356 5 WVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGLLSN 81 (462)
Q Consensus 5 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m~~~ 81 (462)
++.||..||+.++.+|++.++++.+.+++..|.+.|+. ||..+||.+ |++.|++++|.++|++|..|
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~----------~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 187 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE----------PDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----------cchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999999999999999999985 699999999 99999999999999999889
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
|..+|+++|.+|++.|++++|.++|++|.+.|+ .||..+|+.++.+|++.|+.+.+.+++..+
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~----------------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~- 250 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGS----------------DAEPRTFVVMLRASAGLGSARAGQQLHCCV- 250 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC----------------CCChhhHHHHHHHHhcCCcHHHHHHHHHHH-
Confidence 999999999999999999999999999999999 999999999999999999999999999998
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhc----CCcc
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS----NEEN 235 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~----~~~~ 235 (462)
.+.|+.||..+||+|+++|+++|++++|.++|++|.++|..+||.+|.+|++.| ++|+++|++|.+ ||..
T Consensus 251 ----~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 ----LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred ----HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 899999999999999999999999999999999999999999999999999999 999999999976 9999
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh---hc------------CCCCHhHHHHHHHHHHcCCC
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR------------YQPNVTLWNAMISGYAKNGY 300 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~------------~~~~~~~~~~li~~~~~~~~ 300 (462)
||++++.+|++.|++++|.++++.|.+.|+.||..++++|+.+ || ..||..+||+||.+|++.|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999 44 67999999999999999999
Q ss_pred hhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC-----CCCccchHHHHHHHHhcCChHHH
Q 036356 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-----DKDVVMRSAMTVGYGLHGLGEEG 375 (462)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a 375 (462)
.++|+++|++ |...|+.||..||++++.+|++.|++++|.++|+.|. .|+..+|+.++.+|++.|++++|
T Consensus 407 ~~~A~~lf~~-----M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 407 GTKAVEMFER-----MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999 7789999999999999999999999999999999996 38999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356 376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 376 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
.+++++| ++.|+..+|++|+.+|...|+++.|..+++++ ++.|+ ..+|..|+..|++.|++++|...+.+|.+.|
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9998876 58999999999999999999999999999998 77775 6799999999999999999999999999999
Q ss_pred CCC
Q 036356 454 EKT 456 (462)
Q Consensus 454 ~~p 456 (462)
+.+
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 854
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.3e-61 Score=486.59 Aligned_cols=414 Identities=14% Similarity=0.159 Sum_probs=383.2
Q ss_pred CCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh----cC
Q 036356 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL----LS 80 (462)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m----~~ 80 (462)
||..||+.||.+|++.|+++.|.++|+.|.+.|+. ||..+|+.+ |++.|++++|.++|++| ..
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~----------pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~ 504 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK----------ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE 504 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999984 699999999 99999999999999999 68
Q ss_pred CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
||..+|+.+|.+|++.|++++|.++|++|.+.|+ .||..+|+.||.+|++.|++++|.++|++|
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv----------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV----------------KPDRVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999998
Q ss_pred hhhhhhh--cCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC----CCcchHHHHHHHHHhCc--hHHHHHHHhhhc-
Q 036356 161 MDYYIGK--SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS- 231 (462)
Q Consensus 161 ~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~--~~a~~~~~~m~~- 231 (462)
.. .|+.||..+|+++|.+|++.|++++|.++|++|.+ |+..+|+.+|.+|++.| ++|.++|++|..
T Consensus 569 -----~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 569 -----KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred -----HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 44 67999999999999999999999999999999974 57799999999999999 999999999998
Q ss_pred ---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc-------------------CCCCHhHHH
Q 036356 232 ---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-------------------YQPNVTLWN 289 (462)
Q Consensus 232 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~~~ 289 (462)
||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|++++.+|. ..||..+||
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999943 689999999
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHH
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVG 365 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~ 365 (462)
.||.+|++.|++++|.++|++ |...|+.||..||++++.+|++.|+++.|.++|+.|. .||..+|++|+..
T Consensus 724 ~LI~gy~k~G~~eeAlelf~e-----M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSE-----MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999 7789999999999999999999999999999999997 4899999999866
Q ss_pred HHh----c-------------------CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CC
Q 036356 366 YGL----H-------------------GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM---PI 419 (462)
Q Consensus 366 ~~~----~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~ 419 (462)
|.+ . +..+.|..+|++|.+.|+.||..||+.++.++++.+..+.+..++++| +.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence 432 1 224679999999999999999999999999888999999999999998 56
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCCC
Q 036356 420 ELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDKR 459 (462)
Q Consensus 420 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~~ 459 (462)
.|+..+|++|+.++.+. .++|+..+.+|...|+.|+-.
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 67899999999998543 368999999999999999874
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-57 Score=456.08 Aligned_cols=407 Identities=19% Similarity=0.220 Sum_probs=366.1
Q ss_pred CCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh----
Q 036356 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---- 78 (462)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---- 78 (462)
..++..+|+.+|.++++.|++++|.++|+.|.+.+.. .||..+|+.+ +++.++++.|..++..|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~---------~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g 153 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPF---------TLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 3445668999999999999999999999999876532 3799999999 99999999999999999
Q ss_pred cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158 (462)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (462)
..||..+|+.++.+|++.|+++.|.++|++|. .||..+||++|.+|++.|++++|+++|+
T Consensus 154 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP--------------------ERNLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC--------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 78999999999999999999999999999994 5899999999999999999999999999
Q ss_pred HhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC----CCCcchHHHHHHHHHhCc--hHHHHHHHhhhcC
Q 036356 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN 232 (462)
Q Consensus 159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~ 232 (462)
+| .+.|+.||..+|+.++.+|++.|+.+.+.+++..+. .+|..+||.+|.+|++.| ++|.++|++|..+
T Consensus 214 ~M-----~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 214 EM-----WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred HH-----HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 99 889999999999999999999999999999987765 479999999999999999 9999999999999
Q ss_pred CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc-------------------CCCCHhHHHHHHH
Q 036356 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-------------------YQPNVTLWNAMIS 293 (462)
Q Consensus 233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~~~~li~ 293 (462)
|..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|. ..||..+|+++|+
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 999999999999999999999999999999999999999998888744 6888888999999
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHHHHhc
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLH 369 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 369 (462)
+|++.|++++|.++|++ |. .||..+||+||.+|++.|+.++|.++|++|. .||..||++++.+|++.
T Consensus 369 ~y~k~G~~~~A~~vf~~-----m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 369 LYSKWGRMEDARNVFDR-----MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHCCCHHHHHHHHHh-----CC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999888 32 4788889999999999999999999998886 48888999999999999
Q ss_pred CChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 370 GLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 370 ~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
|++++|.++|+.|.+. |+.|+..+|++++++|++.|++++|.+++++|+..|+..+|++|+.+|+..|+.+.|...+.+
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999999999998764 888998999999999999999999999999988889999999999999999998888877666
Q ss_pred hhhcCCCCC
Q 036356 449 GIDEGEKTD 457 (462)
Q Consensus 449 ~~~~~~~pd 457 (462)
+. +..|+
T Consensus 520 l~--~~~p~ 526 (697)
T PLN03081 520 LY--GMGPE 526 (697)
T ss_pred Hh--CCCCC
Confidence 54 44454
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=2.1e-23 Score=219.39 Aligned_cols=356 Identities=13% Similarity=0.062 Sum_probs=225.1
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|.+.|+.+ .+.+..++..+...+.+.|+.++|..+++++.+.+. .+...+.
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~ 571 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-----------------QEIEPAL 571 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------cchhHHH
Confidence 44455555555555555 223344455555555555555555555555544433 3445566
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHH
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGY 215 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~ 215 (462)
.+...+.+.|++++|..+++.+ . ...+.+..+|..+..+|.+.|++++|...|+++.+ .+...+..+...+
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEA-----A-DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-----H-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 6666677777777777777665 2 23344556666677777777777777777766542 2344556666666
Q ss_pred HhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh---hc-------
Q 036356 216 GLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR------- 280 (462)
Q Consensus 216 ~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~------- 280 (462)
...| ++|...|+++.. | +..++..+...+...|++++|.++++.+.+.+. .+...+..+... .|
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHH
Confidence 6666 677777776666 3 355666666666677777777777776666542 222222222222 11
Q ss_pred -------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356 281 -------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353 (462)
Q Consensus 281 -------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 353 (462)
..|+..++..+...+.+.|+.++|.+.+.+.+ .. .+.+...++.+...|.+.|+.++|...|+++.+
T Consensus 725 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-----~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 725 AYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-----KT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-----Hh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34555666677777777777777777777743 22 234566777777778888888888888877652
Q ss_pred ---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 036356 354 ---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRR 427 (462)
Q Consensus 354 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 427 (462)
++..+++.+...+...|+ .+|...+++..+ ..|+ ..++..+...+...|++++|.+.++++ ...| +..++.
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 355667777777777777 778888887776 4454 456667777788888888888888887 3333 677788
Q ss_pred HHHHHHHccCChHHHHHHHHhhh
Q 036356 428 ALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 428 ~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
.+..++...|+.++|...+.+|+
T Consensus 876 ~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 876 HLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888888888887777664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=2.8e-22 Score=210.88 Aligned_cols=415 Identities=12% Similarity=-0.014 Sum_probs=237.9
Q ss_pred CChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcc
Q 036356 11 CTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEEN 84 (462)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~ 84 (462)
..+..+...+...|+++.|...++.+.+..... ...+..+ +.+.|++++|+.+++.+ .+.+..
T Consensus 398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 466 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPEL-----------GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS 466 (899)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH
Confidence 345556666667777777777777776554211 1111111 44555555555555555 333344
Q ss_pred hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH---HHHHhhhcC---------------CCCCeeeHHHHHHHHHh
Q 036356 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISLTAVCR---------------YQPNVTLRNAMISGYAK 146 (462)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---l~~~~~~~~---------------~~p~~~~~~~li~~~~~ 146 (462)
++..+..++...|++++|.+.|+++.+.... .+.. +...+.+.| .+.+..++..+...+.+
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 5555555555555555555555555443320 0000 111111111 11455666677777777
Q ss_pred CCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCc--hH
Q 036356 147 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE--WS 221 (462)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~ 221 (462)
.|+.++|..+|+++ ... .+.+...+..+...|.+.|++++|..+++++.+ .+...|..+..++...| ++
T Consensus 546 ~~~~~~A~~~~~~~-----~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 546 TGNEEEAVAWLEKA-----AEL-NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred cCCHHHHHHHHHHH-----HHh-CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 77777777777775 222 233455666677777777777777777776652 34556777777777777 77
Q ss_pred HHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh---hc---------------
Q 036356 222 AFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV---CR--------------- 280 (462)
Q Consensus 222 a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~--------------- 280 (462)
|...|+++.. .+...+..+..++.+.|++++|..+++.+.+.. +.+..++..+... .|
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777766 344556667777777778888888777776643 1222333333222 11
Q ss_pred CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCcc
Q 036356 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVV 357 (462)
Q Consensus 281 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~ 357 (462)
.+.+...+..+...+.+.|++++|...|.+.+ . ..|+..++..+..++.+.|++++|...++.+.+ .+..
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 771 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-----K--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-----h--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 22344455555555666666666666665522 2 223334555566666666666666666665542 3444
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI 435 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 435 (462)
.+..+...|...|++++|.+.|+++.+.. +++...++.+...+...|+ .+|+..+++. ...| +..++..+...+..
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 55666666666677777777776666632 2235566666666666666 6666666665 3223 34456667777777
Q ss_pred cCChHHHHHHHHhhhhcC
Q 036356 436 PMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 436 ~~~~~~a~~~~~~~~~~~ 453 (462)
.|++++|+..+.++++.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIA 867 (899)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 777777777777776654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.4e-20 Score=175.74 Aligned_cols=300 Identities=16% Similarity=0.085 Sum_probs=217.2
Q ss_pred hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC
Q 036356 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 171 (462)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 171 (462)
.+...|+++.|...|+++.+.++ .+..++..+...+...|++++|..+++.+ ...+..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~-----l~~~~~ 101 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-----------------ETVELHLALGNLFRRRGEVDRAIRIHQNL-----LSRPDL 101 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-----------------ccHHHHHHHHHHHHHcCcHHHHHHHHHHH-----hcCCCC
Confidence 34456777777777777777643 44556777777777777777777777776 332211
Q ss_pred CC---chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCcc
Q 036356 172 NN---VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE 248 (462)
Q Consensus 172 ~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~ 248 (462)
++ ..++..+...|.+.|++++|..+|+++.+.+. .+..++..+...+.+.|
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~--------------------------~~~~~~~~la~~~~~~g 155 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD--------------------------FAEGALQQLLEIYQQEK 155 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc--------------------------chHHHHHHHHHHHHHhc
Confidence 11 23556667777777777777777776654322 23345666777777888
Q ss_pred chhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHH
Q 036356 249 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 328 (462)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 328 (462)
++++|.+.++.+.+.+..++. ......+..+...+.+.|++++|...|++.+ +.. +.+...+
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-----~~~-p~~~~~~ 217 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLR------------VEIAHFYCELAQQALARGDLDAARALLKKAL-----AAD-PQCVRAS 217 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcch------------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----hHC-cCCHHHH
Confidence 888888888888776532100 0012235567777888999999999998843 222 2235577
Q ss_pred HHHHHHHHhcCCcchHHHHhccCCC--CC--ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356 329 TVLIDMYAKCGSVDLAPMFFDRTLD--KD--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 404 (462)
..+...|.+.|++++|.++|+++.+ |+ ..+++.++.+|...|++++|...++++.+ ..|+...+..+...+.+.
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~ 295 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADLLLALAQLLEEQ 295 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHh
Confidence 7788889999999999999998873 33 34578888999999999999999999988 568877778899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHc---cCChHHHHHHHHhhhhcCCCCCCC
Q 036356 405 GYSNHAFKFIMNM-PIELRLSVRRALLSAWKI---PMQQWENMLQTIRGIDEGEKTDKR 459 (462)
Q Consensus 405 g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~pd~~ 459 (462)
|++++|.++++++ ...|+..+++.++..++. .|+..+++..+.+++++++.|++.
T Consensus 296 g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 296 EGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999999999887 667999999988888775 457889998999999988888764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.5e-19 Score=171.30 Aligned_cols=289 Identities=12% Similarity=0.030 Sum_probs=216.3
Q ss_pred hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC---ee
Q 036356 62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN---VT 135 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~---~~ 135 (462)
+...|++++|+..|+++ ..| +..++..+...+.+.|++++|..+++.+.+.+. .++ ..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----------------~~~~~~~~ 108 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD----------------LTREQRLL 108 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC----------------CCHHHHHH
Confidence 77889999999999999 444 456889999999999999999999999987543 221 25
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHH
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 215 (462)
.+..+...|.+.|++++|..+|+++ .+. .+++..+++.++..+.+.|++++|.+.++++.+.+.......+
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~-----l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--- 179 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQL-----VDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--- 179 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-----HcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---
Confidence 6788899999999999999999997 332 3456788999999999999999999999988653222111000
Q ss_pred HhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356 216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295 (462)
Q Consensus 216 ~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 295 (462)
...+..+...+.+.|++++|...++++.+.. +.+...+..+...+
T Consensus 180 ------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~ 224 (389)
T PRK11788 180 ------------------AHFYCELAQQALARGDLDAARALLKKALAAD-----------------PQCVRASILLGDLA 224 (389)
T ss_pred ------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-----------------cCCHHHHHHHHHHH
Confidence 1123445566677788888888888877653 13455677777788
Q ss_pred HcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CCCccchHHHHHHHHhcCChH
Q 036356 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGE 373 (462)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~ 373 (462)
.+.|++++|.++|.++ ...+......+++.++.+|.+.|++++|...++++. .|+...+..++..+.+.|+++
T Consensus 225 ~~~g~~~~A~~~~~~~-----~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 225 LAQGDYAAAIEALERV-----EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred HHCCCHHHHHHHHHHH-----HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHH
Confidence 8888888888888873 232222224567778888888888888888888765 366666677788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---cCChHHHHHHHHhC
Q 036356 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLAR---AGYSNHAFKFIMNM 417 (462)
Q Consensus 374 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m 417 (462)
+|..+++++.+ ..|+..+++.++..+.. .|+.+++..++++|
T Consensus 300 ~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 300 AAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 88888888877 56888888877777664 45788888888877
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=4e-17 Score=149.43 Aligned_cols=353 Identities=14% Similarity=0.058 Sum_probs=273.1
Q ss_pred CChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCcch
Q 036356 11 CTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEENE 85 (462)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~~~ 85 (462)
.+|+.+-+.+...|++.+|..+++.+++... ..+..|-.+ +...|+.+.|...|.+. ..|+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p-----------~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c 185 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKP-----------KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC 185 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-----------hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh
Confidence 4577788888888888888888888887763 244455444 88888888888888777 5555444
Q ss_pred HHHHHH-hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356 86 YGTALD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164 (462)
Q Consensus 86 ~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (462)
..+-+. .+...|++.+|...|.+..+..+ -=...|+.|...+...|++..|++-|++-
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp-----------------~fAiawsnLg~~f~~~Gei~~aiq~y~eA---- 244 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQP-----------------CFAIAWSNLGCVFNAQGEIWLAIQHYEEA---- 244 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCC-----------------ceeeeehhcchHHhhcchHHHHHHHHHHh----
Confidence 333333 33446778888888887776643 33577999999999999999999999884
Q ss_pred hhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccC--CC-CcchHHHHHHHHHhCc--hHHHHHHHhhhc--CC-cc
Q 036356 165 IGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMIVGYGLHE--WSAFGSFDGLLS--NE-EN 235 (462)
Q Consensus 165 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~~-~~ 235 (462)
-.+.|+ ...|-.|-+.|...+.++.|...+.+.. .| ....+..+...|-..| +-|+..|++... |+ ..
T Consensus 245 ---vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 245 ---VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred ---hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 345555 4577788999999999999999888754 23 3445555556677777 889999998888 54 56
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 315 (462)
.|+.|..++...|++.+|.+.|...+.... ....+.+.|...|...|.+++|..+|...+
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-----------------~hadam~NLgni~~E~~~~e~A~~ly~~al--- 381 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCP-----------------NHADAMNNLGNIYREQGKIEEATRLYLKAL--- 381 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHhccchHHHHHHHHHH---
Confidence 899999999999999999999998887542 346678889999999999999999998743
Q ss_pred HHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 036356 316 IGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR- 390 (462)
Q Consensus 316 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~- 390 (462)
.+.|. ...++.|...|...|++++|...+++..+ |+ ...|+.+...|-..|+.+.|.+.+.+.+. +.|.
T Consensus 382 ----~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~ 455 (966)
T KOG4626|consen 382 ----EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTF 455 (966)
T ss_pred ----hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHH
Confidence 35555 56678888899999999999999988763 44 34788888899999999999999999888 8888
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS 424 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 424 (462)
...++-|...|-.+|+..+|+.-+++. .++||..
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 678888999999999999999999887 7777643
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=5.4e-16 Score=164.99 Aligned_cols=379 Identities=10% Similarity=-0.073 Sum_probs=251.1
Q ss_pred hhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCcc---hHH---
Q 036356 19 ACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEEN---EYG--- 87 (462)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~~---~~~--- 87 (462)
.+...|++++|...+++.++... .+...+..+ +.+.|++++|+..|++. ..|+.. .|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P-----------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP-----------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 44567788888888888877652 244445555 78888999999888888 344321 121
Q ss_pred ---------HHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356 88 ---------TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158 (462)
Q Consensus 88 ---------~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (462)
.....+.+.|++++|...|+++.+..+ .+...+..+...+...|++++|++.|+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-----------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-----------------TDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 123456678888999999988888754 456677788899999999999999999
Q ss_pred HhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCC------------cchHHHHHHHHHhCc--hHHHH
Q 036356 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD------------VVMRSAMIVGYGLHE--WSAFG 224 (462)
Q Consensus 159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------~~~~~~li~~~~~~~--~~a~~ 224 (462)
+. .+. .+.+...+..+...|. .++.++|..+++.+.... ...+..+...+...| ++|..
T Consensus 410 ~a-----L~~-~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 410 QA-----LRM-DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HH-----HHh-CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence 96 322 2334556666777764 467899999988765321 112334455566667 99999
Q ss_pred HHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCCh
Q 036356 225 SFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA 301 (462)
Q Consensus 225 ~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 301 (462)
.|++..+ |+ ...+..+...+.+.|++++|...++.+.+.... +...+..+...+...++.
T Consensus 483 ~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-----------------~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 483 LQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-----------------DPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHhCCCH
Confidence 9999988 54 456677888899999999999999998875321 222222222233334444
Q ss_pred hHHHHHhhHHHHH------------------------------------HHHhhCCCCchhHHHHHHHHHHhcCCcchHH
Q 036356 302 EEAVKLFPKWMDY------------------------------------YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP 345 (462)
Q Consensus 302 ~~a~~~~~~~~~~------------------------------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 345 (462)
++|+..+...... .+. ..+.+...+..+...+.+.|+.++|.
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 4444443321000 000 12234455566777777788888888
Q ss_pred HHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036356 346 MFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIE 420 (462)
Q Consensus 346 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 420 (462)
..|++..+ | +...+..+...|...|++++|.+.++...+ ..|+ ...+..+..++...|++++|.++++.+ ...
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88877653 3 456677777788888888888888887665 4554 445566677777788888888888876 222
Q ss_pred C-------CHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356 421 L-------RLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 421 p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
| +...+..+...+...|+.++|+..+.+.+..-
T Consensus 702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 1 22455666777778888888887777776544
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=4.2e-16 Score=155.38 Aligned_cols=311 Identities=11% Similarity=0.034 Sum_probs=242.8
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+.+.|++.+|+.+++.. .+-+...+..++.++...|+++.|...++++.+..+ .+...+.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-----------------~~~~a~~ 114 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-----------------CQPEDVL 114 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-----------------CChHHHH
Confidence 88899999999999988 444566777777888889999999999999998865 5667788
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCc-chHHHHHHHH
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDV-VMRSAMIVGY 215 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~-~~~~~li~~~ 215 (462)
.+...+...|++++|...|++. ... -+.+...+..+...+...|++++|...++.+. .|+. ..+..+ ..+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~A-----l~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l 187 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQA-----WLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSF 187 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-----HHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHH
Confidence 8889999999999999999996 222 23346778889999999999999999998764 2333 233333 335
Q ss_pred HhCc--hHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356 216 GLHE--WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289 (462)
Q Consensus 216 ~~~~--~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (462)
...| ++|...++++.. ++......+..++.+.|++++|...++.+.+.. +.+...+.
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-----------------p~~~~~~~ 250 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-----------------LDGAALRR 250 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------CCCHHHHH
Confidence 5566 899999998777 233344555677889999999999999998764 24667788
Q ss_pred HHHHHHHcCCChhH----HHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHH
Q 036356 290 AMISGYAKNGYAEE----AVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSA 361 (462)
Q Consensus 290 ~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 361 (462)
.+...+...|+.++ |...|++.+ . ..| +...+..+...+.+.|++++|...+++..+ | +...+..
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al-----~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHAL-----Q--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHH-----h--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 88889999999886 788888843 2 234 467888889999999999999999998763 4 3456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH-YARVVDLLARAGYSNHAFKFIMNM-PIELR 422 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 422 (462)
+...+.+.|++++|...++.+.. ..|+... +..+..++...|++++|...+++. ...|+
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 88899999999999999999988 5676433 444567888999999999999987 44444
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=1.1e-15 Score=152.35 Aligned_cols=344 Identities=9% Similarity=-0.060 Sum_probs=264.2
Q ss_pred hccCCChhhHHHHHHhh------cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee
Q 036356 62 HLWSRTEWSAFGSFDGL------LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~ 135 (462)
+.++.+|+.---.|... .--+..-...++..+.+.|+++.|..+++......+ -+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-----------------~~~~ 77 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-----------------NGRD 77 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-----------------Cchh
Confidence 44555555554455444 122344566678888999999999999999998865 3344
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHH
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMI 212 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li 212 (462)
.+..++.+....|++++|...|+++ .. --+.+...+..+...+...|++++|...+++... | +...+..+.
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~-----l~-~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la 151 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKL-----LA-VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHL 151 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHH-----HH-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5555667777899999999999997 22 2233466788889999999999999999998764 3 456778888
Q ss_pred HHHHhCc--hHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356 213 VGYGLHE--WSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288 (462)
Q Consensus 213 ~~~~~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (462)
..+...| ++|...++.+.. |+.......+..+.+.|++++|...++.+.+.... ++...+
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~----------------~~~~~~ 215 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFAL----------------ERQESA 215 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------------cchhHH
Confidence 8898888 899999998866 55443333344578899999999999998775421 334444
Q ss_pred HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcch----HHHHhccCCC--C-CccchHH
Q 036356 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL----APMFFDRTLD--K-DVVMRSA 361 (462)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~--~-~~~~~~~ 361 (462)
..+..++.+.|+.++|+..+.+.+ ... +.+...+..+...|...|++++ |...|++..+ | +...+..
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al-----~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESAL-----ARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTL 289 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-----hcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 556678899999999999999953 222 2346778889999999999986 7899988763 4 4567889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHccCC
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVR-RALLSAWKIPMQ 438 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~l~~~~~~~~~ 438 (462)
+...+...|++++|...+++... ..|+ ...+..+..++.+.|++++|...++.+ ...|+...+ ..+..++...|+
T Consensus 290 lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 290 YADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 99999999999999999999998 6677 567778889999999999999999998 556765443 345678899999
Q ss_pred hHHHHHHHHhhhhc
Q 036356 439 QWENMLQTIRGIDE 452 (462)
Q Consensus 439 ~~~a~~~~~~~~~~ 452 (462)
.++|+..+.+.+..
T Consensus 368 ~deA~~~l~~al~~ 381 (656)
T PRK15174 368 TSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888776543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.7e-15 Score=151.40 Aligned_cols=343 Identities=12% Similarity=-0.003 Sum_probs=257.5
Q ss_pred hccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA 139 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~ 139 (462)
+.+.|++++|+..|++. ..|+...|..+..++.+.|++++|...++...+..+ .+...|..
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-----------------~~~~a~~~ 199 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-----------------DYSKALNR 199 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----------------CCHHHHHH
Confidence 88889999999999998 778888899999999999999999999999998765 56678888
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhhhhhhc---------------------------CCCC-CchHHHHH-----------
Q 036356 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKS---------------------------EYRN-NVIVNTVL----------- 180 (462)
Q Consensus 140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~---------------------------~~~~-~~~~~~~l----------- 180 (462)
+..+|...|++++|+.-|.... ... ...| +...+..+
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASC----IIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 9999999999999987664431 000 0001 10010000
Q ss_pred -------------------HHHH------HhcCCcccHHHHhhccCCC------CcchHHHHHHHHHhCc--hHHHHHHH
Q 036356 181 -------------------IDMY------AKCGSVDLAPMFFDRTLDK------DVVMRSAMIVGYGLHE--WSAFGSFD 227 (462)
Q Consensus 181 -------------------i~~~------~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~--~~a~~~~~ 227 (462)
+..+ ...+++++|.+.|++..+. ....|+.+...+...| ++|+..|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0000 1125677788888766532 2344666666666677 89999999
Q ss_pred hhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHH
Q 036356 228 GLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304 (462)
Q Consensus 228 ~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a 304 (462)
+... |+ ...|..+...+...|++++|...++...+.. +.+...|..+...+...|++++|
T Consensus 356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-----------------SEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8887 55 4467777888888999999999999887763 24577888899999999999999
Q ss_pred HHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHH
Q 036356 305 VKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFH 380 (462)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~ 380 (462)
...|++.+ . ..| +...+..+..++.+.|++++|...|++..+ | +...|+.+...+...|++++|.+.|+
T Consensus 419 ~~~~~kal-----~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 419 GKDYQKSI-----D--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred HHHHHHHH-----H--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999843 2 234 466777788899999999999999998763 3 56678889999999999999999999
Q ss_pred HHHHCCCCCCH-h-------HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 381 HIRKHGIEPRH-Q-------HYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 381 ~m~~~g~~p~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
+... +.|+. . .++.....+...|++++|.+++++. .+.|+ ...+..+...+...|++++|+..+.+..
T Consensus 492 ~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 492 TAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9888 44431 1 1222223344469999999999986 55564 4478899999999999999998887764
Q ss_pred h
Q 036356 451 D 451 (462)
Q Consensus 451 ~ 451 (462)
.
T Consensus 570 ~ 570 (615)
T TIGR00990 570 E 570 (615)
T ss_pred H
Confidence 3
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=1.3e-15 Score=162.12 Aligned_cols=371 Identities=9% Similarity=-0.031 Sum_probs=268.5
Q ss_pred CCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceee----------hhh-----hccCCChhhHHH
Q 036356 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL----------DLY-----HLWSRTEWSAFG 73 (462)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-----~~~~~~~~~A~~ 73 (462)
+...+..+-..+.+.|++++|...|++..+..... ++...| ..+ +.+.|++++|+.
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~---------~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHS---------SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667788888999999999999999998765321 111111 111 678999999999
Q ss_pred HHHhh--c-CCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCCh
Q 036356 74 SFDGL--L-SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA 150 (462)
Q Consensus 74 ~~~~m--~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 150 (462)
.|++. . +.+...+..+..++...|++++|.+.|++..+... .+...+..+...+. .++.
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-----------------~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-----------------GNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHH-hcCH
Confidence 99999 3 44566788888999999999999999999998765 44556666766664 4678
Q ss_pred hHHHHHHHHhhhhhhhhcC--------CCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHHHHHHhCc
Q 036356 151 EEAVKLFPKWMDYYIGKSE--------YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMIVGYGLHE 219 (462)
Q Consensus 151 ~~a~~~~~~m~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~ 219 (462)
++|+.+++.+. ... .......+..+...+...|++++|++.|++..+ | +...+..+...|.+.|
T Consensus 435 ~~A~~~l~~l~-----~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 435 EKALAFIASLS-----ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred HHHHHHHHhCC-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99998887751 111 001123455677788889999999999998764 3 3445666777888888
Q ss_pred --hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHH---------HHHHh---hc--
Q 036356 220 --WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI---------SLTAV---CR-- 280 (462)
Q Consensus 220 --~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------~l~~~---~~-- 280 (462)
++|...+++... |+ ...+..+...+...++.++|...++.+......++...+. .+... .|
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999998877 43 3334444445667888999988887754332222211110 00000 11
Q ss_pred ---------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccC
Q 036356 281 ---------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351 (462)
Q Consensus 281 ---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (462)
.+.+...+..+...+.+.|+.++|+..|++.+ .. -+.+...+..+...|...|+.++|...++..
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al-----~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVL-----TR-EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH-----Hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456677788889999999999999999843 22 1235778889999999999999999999987
Q ss_pred CC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC---CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 352 LD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI--EP---RHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 352 ~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.+ | +...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|++.++..
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 64 3 445566788889999999999999999987421 22 2346666788899999999999999987
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=6.1e-16 Score=141.80 Aligned_cols=343 Identities=15% Similarity=0.118 Sum_probs=257.3
Q ss_pred hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+-..|++++|+.+++.+ .+| ....|..+..++...|+.+.|.+.|.+..+.+ |+.....
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln------------------P~l~ca~ 187 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN------------------PDLYCAR 187 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC------------------cchhhhh
Confidence 66677777777777777 444 35677777777777777777777777777653 3444333
Q ss_pred HHH-HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCCCCc---chHHHHHH
Q 036356 139 AMI-SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMIV 213 (462)
Q Consensus 139 ~li-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~ 213 (462)
+-+ ..+-..|++++|...|.+- -...|. ...|+.|-..+-.+|+...|+.-|++..+-|+ ..|-.+-.
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkA-------i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGn 260 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKA-------IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGN 260 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHH-------HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHH
Confidence 322 3334467777777777663 123333 45677777777778888888888877664333 34555556
Q ss_pred HHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhH
Q 036356 214 GYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTL 287 (462)
Q Consensus 214 ~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 287 (462)
.|...+ ++|+..|.+... | ....+..+...|-..|+++.|+..|+..++. .|+ ...
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~------------------~P~F~~A 322 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL------------------QPNFPDA 322 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc------------------CCCchHH
Confidence 666666 777777776666 4 3566777777788888888888888888774 354 567
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-ccchHHHH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMT 363 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li 363 (462)
|+.|..++-..|++.+|.+.+.+.+ ...|+ ....+.|...|.+.|.++.|.++|....+ |. ....|.|.
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL-------~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa 395 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKAL-------RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLA 395 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHH-------HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHH
Confidence 9999999999999999999998843 23343 56777899999999999999999998775 33 34678899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHccCChH
Q 036356 364 VGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL-SVRRALLSAWKIPMQQW 440 (462)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~ 440 (462)
..|-..|++++|+..+++..+ +.|+ ...|+-+...|-..|+.+.|.+.+.+. .+.|.. ...+.|...|..+|+..
T Consensus 396 ~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 396 SIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence 999999999999999999998 9999 789999999999999999999999988 777764 47889999999999999
Q ss_pred HHHHHHHhhhhcCCCCCC
Q 036356 441 ENMLQTIRGIDEGEKTDK 458 (462)
Q Consensus 441 ~a~~~~~~~~~~~~~pd~ 458 (462)
+|+..+.+.+. .+||-
T Consensus 474 ~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 474 EAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHHc--cCCCC
Confidence 99988876543 44553
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=1.3e-14 Score=147.78 Aligned_cols=385 Identities=9% Similarity=-0.073 Sum_probs=282.9
Q ss_pred CCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--c-CC
Q 036356 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--L-SN 81 (462)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~-~~ 81 (462)
.+.....-.+......|+.++|.++++....... .+...+..+ +...|++++|+.+|+.. . +.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-----------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~ 81 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-----------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ 81 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3444556677788889999999999998876331 233334444 89999999999999998 4 44
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
+...+..+..++...|++++|...+++..+..+ .+.. +..+..++...|+.++|+..+++.
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-----------------~~~~-~~~la~~l~~~g~~~~Al~~l~~a- 142 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-----------------DKAN-LLALAYVYKRAGRHWDELRAMTQA- 142 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHH-HHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 566778888889999999999999999998854 4555 888899999999999999999996
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC-CCc------chHHHHHHHHHhC--------c--hHHHH
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDV------VMRSAMIVGYGLH--------E--WSAFG 224 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~------~~~~~li~~~~~~--------~--~~a~~ 224 (462)
... .+.+...+..+..++...|..+.|.+.++.... |+. ......+...... . ++|+.
T Consensus 143 ----l~~-~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 143 ----LPR-APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred ----HHh-CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 222 233455666788888889999999999987775 221 0112222222111 1 45777
Q ss_pred HHHhhhc-----CCcch-HH----HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhHHHHHHH
Q 036356 225 SFDGLLS-----NEENE-YG----TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAMIS 293 (462)
Q Consensus 225 ~~~~m~~-----~~~~~-~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~li~ 293 (462)
.++.+.+ |+... +. ..+.++...|++++|+..|+.+.+.+-. .|+ ...+ +..
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~---------------~P~~a~~~--la~ 280 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI---------------IPPWAQRW--VAS 280 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---------------CCHHHHHH--HHH
Confidence 7777774 43321 11 1134456779999999999999887531 132 2223 466
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCC-C--CchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-------------
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEY-R--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD------------- 355 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~------------- 355 (462)
+|...|++++|+..|++.+ .... . ........+..++.+.|++++|..+++.+.+ |.
T Consensus 281 ~yl~~g~~e~A~~~l~~~l-----~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELF-----YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHhcCCcHHHHHHHHHHh-----hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 8999999999999999843 2221 1 1134566677788999999999999998764 21
Q ss_pred ---ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 036356 356 ---VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRAL 429 (462)
Q Consensus 356 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 429 (462)
...+..+...+...|+.++|++.++++.. ..|+ ...+..+...+...|++++|++.+++. ...|+ ...+..+
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 11234567788899999999999999988 5676 678889999999999999999999998 66676 5677778
Q ss_pred HHHHHccCChHHHHHHHHhhhh
Q 036356 430 LSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 430 ~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
...+...|++++|...+.+.+.
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 8899999999999988877654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=4.9e-15 Score=148.10 Aligned_cols=362 Identities=12% Similarity=-0.032 Sum_probs=263.6
Q ss_pred hHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCC-CcchH
Q 036356 13 PPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSN-EENEY 86 (462)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~-~~~~~ 86 (462)
+...-..+...|+++.|...|++.++.. |+...|..+ +.+.|++++|++.++.. ..| +...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~------------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~ 197 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK------------PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL 197 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC------------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 3455667778899999999999988764 455555555 88999999999999999 444 46689
Q ss_pred HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH----HHHHhhhcC----------CCCCeeeHHHH------------
Q 036356 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL----LISLTAVCR----------YQPNVTLRNAM------------ 140 (462)
Q Consensus 87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----l~~~~~~~~----------~~p~~~~~~~l------------ 140 (462)
..+..++...|++++|..-|......+.. .... +.+.+.+.. ..++...+..+
T Consensus 198 ~~~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 198 NRRANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 99999999999999998877655433210 1100 000000000 00111111110
Q ss_pred ------------------HHH------HHhCCChhHHHHHHHHhhhhhhhhcC-CCC-CchHHHHHHHHHHhcCCcccHH
Q 036356 141 ------------------ISG------YAKNGYAEEAVKLFPKWMDYYIGKSE-YRN-NVIVNTVLIDMYAKCGSVDLAP 194 (462)
Q Consensus 141 ------------------i~~------~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~ 194 (462)
+.. ....+++++|.+.|++. ...+ ..| +...|+.+...+...|++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a-----l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~ 351 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA-----LDLGKLGEKEAIALNLRGTFKCLKGKHLEAL 351 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH-----HhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 110 01236788999999986 4433 334 3567888888999999999999
Q ss_pred HHhhccCC--CC-cchHHHHHHHHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC
Q 036356 195 MFFDRTLD--KD-VVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266 (462)
Q Consensus 195 ~~~~~m~~--~~-~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (462)
..|++..+ |+ ...|..+...+...| ++|...|++... | +...+..+...+...|++++|...|+..++..
T Consensus 352 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-- 429 (615)
T TIGR00990 352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-- 429 (615)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 99998764 33 446677777787777 999999999888 3 46788888899999999999999999998864
Q ss_pred cchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHH
Q 036356 267 LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM 346 (462)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 346 (462)
+.+...+..+...+.+.|++++|+..|.+.+ .. .+.+...|+.+...+...|++++|..
T Consensus 430 ---------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-----~~-~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 430 ---------------PDFIFSHIQLGVTQYKEGSIASSMATFRRCK-----KN-FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred ---------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----Hh-CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 2456778888889999999999999999843 21 22346788889999999999999999
Q ss_pred HhccCCC--CC-ccch-------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 036356 347 FFDRTLD--KD-VVMR-------SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIM 415 (462)
Q Consensus 347 ~~~~~~~--~~-~~~~-------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 415 (462)
.|++..+ |+ ...+ +.....+...|++++|.+++++... +.|+ ...+..+...+.+.|++++|.+.|+
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9998653 32 1111 1122233446999999999999887 5676 4578899999999999999999999
Q ss_pred hC
Q 036356 416 NM 417 (462)
Q Consensus 416 ~m 417 (462)
+.
T Consensus 567 ~A 568 (615)
T TIGR00990 567 RA 568 (615)
T ss_pred HH
Confidence 87
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.67 E-value=1.7e-13 Score=139.60 Aligned_cols=355 Identities=9% Similarity=-0.001 Sum_probs=257.1
Q ss_pred eehhhhccCCChhhHHHHHHhh--cC-CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC
Q 036356 57 FLDLYHLWSRTEWSAFGSFDGL--LS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 133 (462)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~~~~m--~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~ 133 (462)
-|..+....|+.++|++++... .. .+...+..+..++...|++++|..++++..+..+ .+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-----------------~~ 82 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-----------------QN 82 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CC
Confidence 3555588999999999999999 23 3344689999999999999999999999998754 55
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHH
Q 036356 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSA 210 (462)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~ 210 (462)
...+..+...+...|+.++|+..+++. ... .+.+.. +..+..++...|+.++|...+++..+ | +...+..
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~-----l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQL-----VSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 667788889999999999999999996 332 334455 88889999999999999999998874 3 3444555
Q ss_pred HHHHHHhCc--hHHHHHHHhhhc-CCc------chHHHHHHhhc-----Cccch---hhhHHHHHHHHHhCCCcchHHHH
Q 036356 211 MIVGYGLHE--WSAFGSFDGLLS-NEE------NEYGTALDCSC-----DLEFL---EQGKIVHGFMIKLGLELESDLLI 273 (462)
Q Consensus 211 li~~~~~~~--~~a~~~~~~m~~-~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~~~~ 273 (462)
+...+...+ +.|+..++.... |+. .....++.... ..+++ +.|+..++.+.+.--.
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~------- 228 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD------- 228 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc-------
Confidence 666676666 779998887766 432 01222222222 22234 6788888888765210
Q ss_pred HHHHhhcCCCCHh-H----HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-CchhHHHHHHHHHHhcCCcchHHHH
Q 036356 274 SLTAVCRYQPNVT-L----WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NNVIVNTVLIDMYAKCGSVDLAPMF 347 (462)
Q Consensus 274 ~l~~~~~~~~~~~-~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~ 347 (462)
.|+.. . ....+.++...|+.++|...|+. +.+.+.. |+- .-..+..+|...|++++|..+
T Consensus 229 --------~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~-----ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 229 --------NPDATADYQRARIDRLGALLARDRYKDVISEYQR-----LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred --------CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 13221 1 11113455677999999999999 4444422 332 122257789999999999999
Q ss_pred hccCCC--CCc-----cchHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCC---HhHHHHHHHHHHhcCC
Q 036356 348 FDRTLD--KDV-----VMRSAMTVGYGLHGLGEEGWVLFHHIRKHG-----------IEPR---HQHYARVVDLLARAGY 406 (462)
Q Consensus 348 ~~~~~~--~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~---~~~~~~li~~~~~~g~ 406 (462)
|+++.+ |.. ..+..|..++...|++++|..+++.+.+.. -.|+ ...+..+...+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 998764 221 235566778899999999999999998741 1123 2345677888999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCC
Q 036356 407 SNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDK 458 (462)
Q Consensus 407 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~ 458 (462)
+++|+++++++ ...| +...+..+...+...|+.++|+..+.+.+.. .||.
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRN 426 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCC
Confidence 99999999998 3334 5778899999999999999999888766553 3553
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.3e-13 Score=121.37 Aligned_cols=393 Identities=13% Similarity=0.057 Sum_probs=263.7
Q ss_pred CCChHHHHHhhccCCCCccchhhhHhHhhhCchh-----hhhhhcCC---CCCce--eehhh------------hccCCC
Q 036356 10 GCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-----CYLFDGLF---DRTIV--FLDLY------------HLWSRT 67 (462)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~--~~~~~------------~~~~~~ 67 (462)
+.|=+.|++.. .+|.++++.-+++.|.+.|... .++|+-.. ..++. -|.-. -.+.|.
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 44566676655 4678899999999999888765 22332221 01111 11111 112222
Q ss_pred hhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhC
Q 036356 68 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKN 147 (462)
Q Consensus 68 ~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~ 147 (462)
.. +++-+..+.+..+|.++|.++|+--..+.|.+++++...... +.+..+||.+|.+-.-.
T Consensus 195 vA---dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~----------------kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 195 VA---DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG----------------KVYREAFNGLIGASSYS 255 (625)
T ss_pred HH---HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh----------------eeeHHhhhhhhhHHHhh
Confidence 22 244444566778999999999999999999999999887766 68888899888764322
Q ss_pred CChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHH----HhhccC----CCCcchHHHHHHHHHhCc
Q 036356 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM----FFDRTL----DKDVVMRSAMIVGYGLHE 219 (462)
Q Consensus 148 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~----~~~~~~~~~li~~~~~~~ 219 (462)
.. .++..+| ....+.||..|+|+++++.++.|+++.|.+ ++.+|+ +|...+|..+|..+.+.+
T Consensus 256 ~~----K~Lv~EM-----isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 256 VG----KKLVAEM-----ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred cc----HHHHHHH-----HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 22 6778888 788889999999999999999998876554 455555 478888998888888877
Q ss_pred ---hHHHHHHHhhhc------------CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC
Q 036356 220 ---WSAFGSFDGLLS------------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284 (462)
Q Consensus 220 ---~~a~~~~~~m~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (462)
..+..+..++.. .|...|...+..|.+..+.+-|.++...+....-..- +.|+
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~------------ig~~ 394 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF------------IGPD 394 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh------------cChH
Confidence 445555555544 3556788899999999999999998887654321000 1122
Q ss_pred ---HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCc----c
Q 036356 285 ---VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV----V 357 (462)
Q Consensus 285 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~ 357 (462)
..-|..+....|+....+.....++. |..+-+-|+..+...++++..-.|.++-..++|..+..-+. .
T Consensus 395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~-----lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 395 QHRNFYYRKFFDLICQMESIDVTLKWYED-----LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 33466777888888888888888888 66777888888888899999889999988888887764221 1
Q ss_pred chHHHHHHHHhcC-Ch--------------------HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 358 MRSAMTVGYGLHG-LG--------------------EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 358 ~~~~li~~~~~~~-~~--------------------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
.-.-++..+++.. +. +.....-.+|.+..+ .....+...-.+.+.|+.++|.+++..
T Consensus 470 l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l 547 (625)
T KOG4422|consen 470 LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGL 547 (625)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHH
Confidence 1112222333322 11 111122233444333 345567777778899999999998877
Q ss_pred C-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 417 M-------PIELRLSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 417 m-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
. +..|......-++....+.++..+|+..++-|.
T Consensus 548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6 223444444477788888888888887776553
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=1.1e-12 Score=131.75 Aligned_cols=373 Identities=11% Similarity=-0.032 Sum_probs=234.3
Q ss_pred hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCc--eeehhh--hccCCChhhHHHHHHhhcCC-CcchHHHH--HHh
Q 036356 20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTI--VFLDLY--HLWSRTEWSAFGSFDGLLSN-EENEYGTA--LDC 92 (462)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~A~~~~~~m~~~-~~~~~~~l--l~~ 92 (462)
..+.|++..|...+++..+... +. ..+..+ +...|+.++|+..+++.+.| +...+..+ ...
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P------------~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGP------------LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCc------------cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 3477888899999999887763 32 122222 77779999999999988544 33344444 457
Q ss_pred hcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC
Q 036356 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 172 (462)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 172 (462)
+...|++++|.++|+++.+..+ -+...+..++..+...++.++|++.++.. ....|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-----------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l-------~~~dp 167 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-----------------TNPDLISGMIMTQADAGRGGVVLKQATEL-------AERDP 167 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-----------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHh-------cccCc
Confidence 7778999999999999988865 33444455555666666666666666664 11233
Q ss_pred CchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHHHHHHhCc--hHHH------------------------
Q 036356 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMIVGYGLHE--WSAF------------------------ 223 (462)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~--~~a~------------------------ 223 (462)
+...+-.++..+...++..+|++.++++.+ | +...+..+..+..+.| ..|.
T Consensus 168 ~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a 247 (822)
T PRK14574 168 TVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAA 247 (822)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHH
Confidence 333333333333333444345555555542 2 2222333333444443 3333
Q ss_pred ------------------------HHHHhhhc-----CCcch-----HHHHHHhhcCccchhhhHHHHHHHHHhCCCcch
Q 036356 224 ------------------------GSFDGLLS-----NEENE-----YGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269 (462)
Q Consensus 224 ------------------------~~~~~m~~-----~~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 269 (462)
.-++.+.. |.... ..=.+-++...++..++++.|+.+...|.+
T Consensus 248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~--- 324 (822)
T PRK14574 248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK--- 324 (822)
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC---
Confidence 33333322 21111 111233445555566666666666555432
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhc
Q 036356 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349 (462)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (462)
.-..+--.+.++|...+++++|+.++...+.+.-......++......|.-+|...+++++|..+++
T Consensus 325 -------------~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 325 -------------MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred -------------CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2344667788899999999999999988432110000123344556788889999999999999999
Q ss_pred cCCC--CC-------------c---cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356 350 RTLD--KD-------------V---VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA 410 (462)
Q Consensus 350 ~~~~--~~-------------~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 410 (462)
.+.+ |. . ..+..++..+.-.|+..+|++.++++.. ..|. ......+.+.+...|.+.+|
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 8874 20 0 0123467778889999999999999977 6664 77888899999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 036356 411 FKFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQT 446 (462)
Q Consensus 411 ~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 446 (462)
++.++.. .+.|+ ..+......++...+++.+|...+
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999777 55664 456677888888889998886444
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=2.9e-12 Score=131.25 Aligned_cols=161 Identities=12% Similarity=-0.081 Sum_probs=125.1
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CCCccchH
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRS 360 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 360 (462)
|+...+..+...+.+.|+.++|...+.+.+ ... ..+...+..+.....+.|++++|...+++.. .|+...|.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL-----~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~ 613 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAE-----QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYV 613 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHH-----hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 445556667778888999999999998843 222 2223333334444455699999999999877 47777888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccC
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPM 437 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~ 437 (462)
.+...+.+.|++++|...+++... ..|+ ...+..+..++...|++++|+..+++. ...| +...+..+..++...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 888999999999999999999998 7787 567778888999999999999999987 4455 5668889999999999
Q ss_pred ChHHHHHHHHhhhh
Q 036356 438 QQWENMLQTIRGID 451 (462)
Q Consensus 438 ~~~~a~~~~~~~~~ 451 (462)
+.++|+..+.+.+.
T Consensus 692 d~~eA~~~l~~Al~ 705 (987)
T PRK09782 692 DMAATQHYARLVID 705 (987)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999988877654
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=3.6e-12 Score=128.00 Aligned_cols=357 Identities=10% Similarity=0.019 Sum_probs=261.6
Q ss_pred hccCCChhhHHHHHHhh--cCCCcc-hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
..+.|+++.|++.|++. ..|+.. ....++..+...|+.++|...+++.... -+...+.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-------------------~n~~~~~ 104 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-------------------MNISSRG 104 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-------------------CCCCHHH
Confidence 88999999999999999 666642 3338888888999999999999998821 1233333
Q ss_pred HH--HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHH
Q 036356 139 AM--ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216 (462)
Q Consensus 139 ~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 216 (462)
.+ ...+...|++++|+++|+++ .+. .+-+...+..++..|...++.++|++.++++...+......+..++.
T Consensus 105 llalA~ly~~~gdyd~Aiely~ka-----L~~-dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL 178 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSS-----LKK-DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYL 178 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-----Hhh-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 33 55788899999999999997 332 23346667788899999999999999999998655444444555666
Q ss_pred hCc----hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHH--------------------HHhCCCcch
Q 036356 217 LHE----WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFM--------------------IKLGLELES 269 (462)
Q Consensus 217 ~~~----~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~--------------------~~~~~~~~~ 269 (462)
..+ .+|++.++++.. |+ ...+..+..++.+.|-...|.++...- ++.+..++.
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 633 579999999999 64 556677888888888887777665532 111211110
Q ss_pred H-------H------HHHHHHhhcCCCCH-hHH----HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH
Q 036356 270 D-------L------LISLTAVCRYQPNV-TLW----NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331 (462)
Q Consensus 270 ~-------~------~~~l~~~~~~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 331 (462)
. + +..++..-+..|.. ..| --.+-++...|+..++++.|+. +...+.+....+-..+
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~-----l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA-----MEAEGYKMPDYARRWA 333 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----hhhcCCCCCHHHHHHH
Confidence 0 0 01111111122322 222 2345578889999999999999 7777876667788889
Q ss_pred HHHHHhcCCcchHHHHhccCCCCC---------ccchHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC-
Q 036356 332 IDMYAKCGSVDLAPMFFDRTLDKD---------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-----------EPR- 390 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~- 390 (462)
.++|...+++++|..+++.+..++ ......|..+|...+++++|..+++.+.+.-- .|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 999999999999999999875321 22246789999999999999999999998310 122
Q ss_pred --HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 391 --HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 391 --~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
...+..++..+...|++.+|++.++++ ...| |......+...+...|+..+|...+..
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 334456778889999999999999999 3344 788899999999999999999988843
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.4e-12 Score=115.04 Aligned_cols=373 Identities=10% Similarity=0.060 Sum_probs=235.6
Q ss_pred CCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhhhccCCChhhHHHHHHhh----cCC
Q 036356 6 VAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGL----LSN 81 (462)
Q Consensus 6 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m----~~~ 81 (462)
.|-+..||..+|.++|+.-..+.|.+++++-...... -+.-++|.+ ...-.+....++..+| ..|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k----------v~~~aFN~l-I~~~S~~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK----------VYREAFNGL-IGASSYSVGKKLVAEMISQKMTP 271 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe----------eeHHhhhhh-hhHHHhhccHHHHHHHHHhhcCC
Confidence 3556789999999999999999999999988766542 366677777 0000112226788888 899
Q ss_pred CcchHHHHHHhhcCccchhh----HHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhH-HHHH
Q 036356 82 EENEYGTALDCSCDLEFLEQ----GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEE-AVKL 156 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~ 156 (462)
|..|||+++++.++.|+++. |.+++.+|++.|+ .|...+|..+|..+.+.++..+ |..+
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV----------------ePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV----------------EPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC----------------CcchhhHHHHHHHhcccCCchhhhHHH
Confidence 99999999999999998765 5688999999999 9999999999999999888744 4555
Q ss_pred HHHhhhhhhhhcCCCC----CchHHHHHHHHHHhcCCcccHHHHhhccCC--------CCc---chHHHHHHHHHhCc--
Q 036356 157 FPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--------KDV---VMRSAMIVGYGLHE-- 219 (462)
Q Consensus 157 ~~~m~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~---~~~~~li~~~~~~~-- 219 (462)
+.+.+... ....++| |...|.+.+..|.+..|.+.|.++-.-... ++. .-|..+....++..
T Consensus 336 i~dI~N~l-tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 336 INDIQNSL-TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHhh-ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 55542111 2222333 456778889999999999999887654442 111 12444555555555
Q ss_pred hHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356 220 WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295 (462)
Q Consensus 220 ~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 295 (462)
+..+.+|+.|.. |+..+...++++..-.|.++-..+++..++..|...+.....-++..
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~----------------- 477 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML----------------- 477 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH-----------------
Confidence 888999999988 99999999999999999999999999999988865332222221111
Q ss_pred HcCCChhHHHHHhhHHHHHHHHhhCCCCchh---HHHHHHHHHHhcCCcchH-HHHhccCC--CCCccchHHHHHHHHhc
Q 036356 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI---VNTVLIDMYAKCGSVDLA-PMFFDRTL--DKDVVMRSAMTVGYGLH 369 (462)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A-~~~~~~~~--~~~~~~~~~li~~~~~~ 369 (462)
+.+....|+.. -+.....-|+. ++-++ ..--.++. +......+.....+.+.
T Consensus 478 --------------------L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~ 535 (625)
T KOG4422|consen 478 --------------------LARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDWPATSLNCIAILLLRA 535 (625)
T ss_pred --------------------HhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHc
Confidence 11222222212 11111111110 01000 00011111 23444555666666677
Q ss_pred CChHHHHHHHHHHHHC-CCCCCHhHHH---HHHHHHHhcCChHHHHHHHHhC--CCCCCHH-HHHHHHHHHHccCChHHH
Q 036356 370 GLGEEGWVLFHHIRKH-GIEPRHQHYA---RVVDLLARAGYSNHAFKFIMNM--PIELRLS-VRRALLSAWKIPMQQWEN 442 (462)
Q Consensus 370 ~~~~~a~~~~~~m~~~-g~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m--~~~p~~~-~~~~l~~~~~~~~~~~~a 442 (462)
|..++|.++|..+.+. +--|-....+ -+++.-...+.+..|..+++-| .-.|... .-+.+...|.-.....++
T Consensus 536 G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ 615 (625)
T KOG4422|consen 536 GRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEA 615 (625)
T ss_pred chHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHH
Confidence 7777777777776544 2223333333 4555556667777777777666 1112222 445555665555444444
Q ss_pred HHH
Q 036356 443 MLQ 445 (462)
Q Consensus 443 ~~~ 445 (462)
+.-
T Consensus 616 ls~ 618 (625)
T KOG4422|consen 616 LSN 618 (625)
T ss_pred Hhh
Confidence 433
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.59 E-value=5e-12 Score=129.57 Aligned_cols=208 Identities=9% Similarity=-0.121 Sum_probs=144.7
Q ss_pred hHHHHHhhc--cCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCcch
Q 036356 13 PPLVLKACV--ALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEENE 85 (462)
Q Consensus 13 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~~~ 85 (462)
|..++.+.. ..|++++|...|+..++.... +...+..+ |...|++++|+..+++. ..|+-..
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-----------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~ 113 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPD-----------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDAR 113 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 334444443 338899999999999887642 34444444 99999999999999999 5565555
Q ss_pred HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH---HHHH--------hhhcC------------CCCCeeeHHHH-H
Q 036356 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---LISL--------TAVCR------------YQPNVTLRNAM-I 141 (462)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---l~~~--------~~~~~------------~~p~~~~~~~l-i 141 (462)
|..++..+ ++.++|..+++++.+..+. .++. +... |.+.+ +.|+..+.... .
T Consensus 114 ~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 114 LERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHH
Confidence 55545333 8899999999999988762 1222 1121 22222 33345545555 7
Q ss_pred HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh-cCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-
Q 036356 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE- 219 (462)
Q Consensus 142 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~- 219 (462)
..|.+.|++++|++++.++ .+.+ +.+..-...|-.+|.. .++ +++..+++...+.+...+..+...|.+.|
T Consensus 190 rlY~~l~dw~~Ai~lL~~L-----~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEA-----RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHhCHHHHHHHHHHH-----HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCC
Confidence 8899999999999999997 4444 3334445667678887 477 88888877655567888889999999999
Q ss_pred -hHHHHHHHhhhc-----CCcchHHHHHH
Q 036356 220 -WSAFGSFDGLLS-----NEENEYGTALD 242 (462)
Q Consensus 220 -~~a~~~~~~m~~-----~~~~~~~~ll~ 242 (462)
++|..+++++.. |...++-.++.
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~ 291 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLS 291 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHH
Confidence 899999998877 55556555543
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.48 E-value=7.6e-11 Score=113.54 Aligned_cols=356 Identities=12% Similarity=0.011 Sum_probs=261.5
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+++ |+.++|.+++.++ .+.+...|.+|..+|-+.|+.+++...+-.+....+ .|...|.
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-----------------~d~e~W~ 211 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-----------------KDYELWK 211 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-----------------CChHHHH
Confidence 555 9999999999999 556778999999999999999999888776665554 5778999
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc----chHH----H
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV----VMRS----A 210 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~----~ 210 (462)
.+..-..+.|+++.|.-+|.+. ... -+++...+---...|-+.|+...|...|.++.+.++ .-.- .
T Consensus 212 ~ladls~~~~~i~qA~~cy~rA-----I~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRA-----IQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHH-----Hhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 9999999999999999999995 322 344555555577889999999999999988875333 1122 2
Q ss_pred HHHHHHhCc--hHHHHHHHhhhc-----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHH---------
Q 036356 211 MIVGYGLHE--WSAFGSFDGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS--------- 274 (462)
Q Consensus 211 li~~~~~~~--~~a~~~~~~m~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 274 (462)
.++.+...+ +.|.+.++.... .+...++.++..+.+...++.+......+.....++|..-+.+
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 344555555 777777776665 5566788888999999999999988888777555555444311
Q ss_pred -HHHh-hcCCCCHhHHHHHHHHHHcCC--ChhHHHHHhhHHHHHHHHhhCC--CCchhHHHHHHHHHHhcCCcchHHHHh
Q 036356 275 -LTAV-CRYQPNVTLWNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMYAKCGSVDLAPMFF 348 (462)
Q Consensus 275 -l~~~-~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~ 348 (462)
+... -+..++...+ .+.-++.+.+ ...+++.-| ...... .-+...|.-+.++|...|++.+|.++|
T Consensus 366 ~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~-------l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHF-------LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred ccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHH-------HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111 1133444441 2222333333 344444433 334443 335678888999999999999999999
Q ss_pred ccCCC----CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC------
Q 036356 349 DRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM------ 417 (462)
Q Consensus 349 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m------ 417 (462)
..+.. .+...|-.+..+|...|.++.|.+.++.... ..|+ ...-.+|-..+.+.|+.++|.+.+..+
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 98873 3566899999999999999999999999998 7787 556677888899999999999999996
Q ss_pred -----CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 418 -----PIELRLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 418 -----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
...|+....-.....+...|+.++-+....+|+.
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2345555666777888888888876655555544
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=7.2e-11 Score=111.26 Aligned_cols=215 Identities=13% Similarity=0.012 Sum_probs=154.3
Q ss_pred hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 036356 220 WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA 296 (462)
Q Consensus 220 ~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 296 (462)
+.|...+++..+ | +......+...+.+.|++++|.+++..+.+.+..++. ....+ ....|..++....
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l--------~~~a~~~l~~~~~ 240 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML--------EQQAWIGLMDQAM 240 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH--------HHHHHHHHHHHHH
Confidence 444444444444 2 3455667778889999999999999999998764211 00000 0013334444444
Q ss_pred cCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHH
Q 036356 297 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGW 376 (462)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 376 (462)
...+.+...++++.. . ...+.++.....+...+...|+.++|.+++++..+.....--.++.+....++.+++.
T Consensus 241 ~~~~~~~l~~~w~~l-----p-~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al 314 (398)
T PRK10747 241 ADQGSEGLKRWWKNQ-----S-RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLE 314 (398)
T ss_pred HhcCHHHHHHHHHhC-----C-HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHH
Confidence 445555666665552 1 1234567788889999999999999999998876522222233455666679999999
Q ss_pred HHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 377 VLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 377 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
+..+...+ -.|+ ...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|...+.+.+.
T Consensus 315 ~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998 6677 556889999999999999999999998 7789999999999999999999999887776543
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.2e-10 Score=103.86 Aligned_cols=347 Identities=14% Similarity=0.108 Sum_probs=220.1
Q ss_pred hccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH-----------HHHHhhhc
Q 036356 62 HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-----------LISLTAVC 128 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-----------l~~~~~~~ 128 (462)
+.+.|.++.|+..|+++ ..||..+-..|+-++...|+-++..+.|..|......++.|. ++.--.+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 89999999999999998 778876555555555667888999999999987654223221 22222222
Q ss_pred C---------------------------CCCCeee---HH------------------HHHHHHHhCCChhHHHHHHHHh
Q 036356 129 R---------------------------YQPNVTL---RN------------------AMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 129 ~---------------------------~~p~~~~---~~------------------~li~~~~~~g~~~~a~~~~~~m 160 (462)
. +.|+-.. |. .-...+.++|+++.|++++..+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1 1222111 10 0012355666666666666654
Q ss_pred hhhhhhhcCCCCCchHHHHHHHH-HH-hcCCcccHHHHhhccCCCCcchHHHHH---H-HHHhCc-hHHHHHHHhhhcCC
Q 036356 161 MDYYIGKSEYRNNVIVNTVLIDM-YA-KCGSVDLAPMFFDRTLDKDVVMRSAMI---V-GYGLHE-WSAFGSFDGLLSNE 233 (462)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~-~~-~~g~~~~a~~~~~~m~~~~~~~~~~li---~-~~~~~~-~~a~~~~~~m~~~~ 233 (462)
.+..-+.-...-|.|--. |. --.++..|...-+.....|...-.++. . +|.... ++|.+.|++....|
T Consensus 446 -----~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 446 -----EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred -----HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 222222212122211111 11 123444554444443322222111111 0 122222 77777777777643
Q ss_pred cchHHHHH---HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 234 ENEYGTAL---DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 234 ~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
...-..|. -.+-..|++++|+..|-.+... ...++...-.+...|-...++..|.+++-.
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~i-----------------l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-----------------LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-----------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 33222222 2344667778887777665432 124666666677777777888888888744
Q ss_pred HHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356 311 WMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386 (462)
Q Consensus 311 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 386 (462)
...+.| |+.....|.+.|-+.|+-..|.+.+-.-- ..|..+..-|..-|....-++++..+|++..-
T Consensus 584 -------~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 584 -------ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred -------hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 445545 68888999999999999999988775433 35777878888888888889999999999887
Q ss_pred CCCCHhHHHHHHHHHH-hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCh
Q 036356 387 IEPRHQHYARVVDLLA-RAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQ 439 (462)
Q Consensus 387 ~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~ 439 (462)
++|+..-|..++..|. +.|++.+|..+++.. .+..|......|++.+-..|..
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999888665 579999999999998 5666888888899888777653
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=3.7e-13 Score=121.08 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=71.5
Q ss_pred HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316 (462)
Q Consensus 237 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 316 (462)
+...+..+.+.++++++.++++.+....- .+.+...|..+...+.+.|+.++|++.+++.+.
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--- 174 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPA---------------APDSARFWLALAEIYEQLGDPDKALRDYRKALE--- 174 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccC---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence 33444444555555555555555543221 124555555666666666666666666666321
Q ss_pred HhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 036356 317 GKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RH 391 (462)
Q Consensus 317 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~ 391 (462)
..| |....+.++..+...|+.+++..+++... ..|...|..+..+|...|++++|+.+|++..+ ..| |.
T Consensus 175 ----~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~ 248 (280)
T PF13429_consen 175 ----LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDP 248 (280)
T ss_dssp ----H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-H
T ss_pred ----cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccc
Confidence 223 24455556666666666665555554433 23455556666666666666666666666655 444 35
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 392 QHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.....+.+++...|+.++|.++.++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 55556666666666666666655543
No 31
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=6.1e-13 Score=84.49 Aligned_cols=50 Identities=32% Similarity=0.522 Sum_probs=46.9
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036356 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR 403 (462)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 403 (462)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=7e-13 Score=119.28 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=109.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcC-CCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 217 (462)
.+...+.+.|++++|++++++- .... .+.|...|..+...+-..++++.|...++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~-----~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~----------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKA-----AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA----------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccc-----------
Confidence 4466677888888888888552 2222 2334455555556666677888888888877654332
Q ss_pred CchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297 (462)
Q Consensus 218 ~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 297 (462)
+...+..++.. ...+++++|.+++....+.. ++...+..++..+.+
T Consensus 77 ---------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------------------~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 77 ---------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERD------------------GDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred ---------------ccccccccccc-cccccccccccccccccccc------------------cccchhhHHHHHHHH
Confidence 12234444444 57888999998887765542 566777888899999
Q ss_pred CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHH
Q 036356 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEE 374 (462)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~ 374 (462)
.++++++..++.... .......+...|..+...+.+.|+.++|.+++++.. .| |....+.++..+...|+.++
T Consensus 123 ~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 123 LGDYDEAEELLEKLE----ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp TT-HHHHHHHHHHHH----H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred HhHHHHHHHHHHHHH----hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence 999999999998832 223345678889899999999999999999999987 35 46778899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
+.+++....+.. +.|...+..+..+|...|+.++|+..+++. ...| |+.....+..++...|+.++|.....+.
T Consensus 199 ~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 199 AREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999988853 445678889999999999999999999998 3334 8888899999999999999998766554
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=2.7e-10 Score=107.35 Aligned_cols=283 Identities=13% Similarity=-0.014 Sum_probs=193.1
Q ss_pred hccCCChhhHHHHHHhh-c-CCCcch-HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL-L-SNEENE-YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m-~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
....|++++|.+.+... . .+++.. |.....+..+.|+++.|...+.++.+. .|+...+.
T Consensus 94 a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------------------~~~~~~~~ 155 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL------------------ADNDQLPV 155 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------CCcchHHH
Confidence 55579999999888777 2 222233 333344447889999999999999875 34554333
Q ss_pred --HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcch---HHHHHH
Q 036356 139 --AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM---RSAMIV 213 (462)
Q Consensus 139 --~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~li~ 213 (462)
.....+...|+++.|.+.++++ .+.. +-+......+...|.+.|++++|.+++..+.+..... ...+-
T Consensus 156 ~l~~a~l~l~~g~~~~Al~~l~~~-----~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~- 228 (398)
T PRK10747 156 EITRVRIQLARNENHAARHGVDKL-----LEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE- 228 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-----HhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH-
Confidence 3356788899999999999986 3332 4456778888999999999999999988877533221 11000
Q ss_pred HHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293 (462)
Q Consensus 214 ~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 293 (462)
..+|..++.......+.+...++++.+-+. .+.+......+..
T Consensus 229 --------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-----------------~~~~~~~~~~~A~ 271 (398)
T PRK10747 229 --------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-----------------TRHQVALQVAMAE 271 (398)
T ss_pred --------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-----------------HhCCHHHHHHHHH
Confidence 001122222222223334444444444222 1246777888888
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcC
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHG 370 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~ 370 (462)
.+...|+.++|.+.+.+. .+ ..|+... .++.+....++.+++.+..+...+ | |...+..+...|.+.+
T Consensus 272 ~l~~~g~~~~A~~~L~~~-----l~--~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 272 HLIECDDHDTAQQIILDG-----LK--RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHHHCCCHHHHHHHHHHH-----Hh--cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999873 23 2344322 123344456888888888887763 4 4455778889999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
++++|.+.|+...+ ..|+..+|..+...+.+.|+.++|.+++++-
T Consensus 343 ~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 343 EWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999998 7899999999999999999999999988865
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=4.2e-11 Score=111.78 Aligned_cols=274 Identities=13% Similarity=0.052 Sum_probs=189.0
Q ss_pred chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe-eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC-CCCch
Q 036356 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVI 175 (462)
Q Consensus 98 ~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~ 175 (462)
+.++|...|+.+... .+|. .+...+..+|...+++++|.++|+..+ ..... .-+..
T Consensus 334 ~~~~A~~~~~klp~h------------------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r----~~~p~rv~~me 391 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH------------------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVR----RIEPYRVKGME 391 (638)
T ss_pred HHHHHHHHHHhhHHh------------------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccccccchh
Confidence 356777777774443 2333 344456677777788888888887752 11111 22456
Q ss_pred HHHHHHHHHHhcCCccc-HHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccc
Q 036356 176 VNTVLIDMYAKCGSVDL-APMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEF 249 (462)
Q Consensus 176 ~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~ 249 (462)
+|.+.+.-+-+.-...- |..+.+ +....+.+|-++..+|...+ +.|++.|++..+ | ..++|+.+-.-+.....
T Consensus 392 iyST~LWHLq~~v~Ls~Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 392 IYSTTLWHLQDEVALSYLAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE 470 (638)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH
Confidence 67666654432211111 222222 22345567777777777777 777777777777 4 56677777777788888
Q ss_pred hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH---HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-ch
Q 036356 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA---MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NV 325 (462)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~ 325 (462)
+|.|...|...+. .|...||+ +.-.|.+.++.+.|+-.|++. ..+.| +.
T Consensus 471 ~d~a~~~fr~Al~--------------------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA-------~~INP~ns 523 (638)
T KOG1126|consen 471 FDKAMKSFRKALG--------------------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA-------VEINPSNS 523 (638)
T ss_pred HHhHHHHHHhhhc--------------------CCchhhHHHHhhhhheeccchhhHHHHHHHhh-------hcCCccch
Confidence 8999888887764 55555555 455788999999999999883 34555 35
Q ss_pred hHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 036356 326 IVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLL 401 (462)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 401 (462)
+....+...+.+.|+.++|+.++++.. ..|+.+--.-+..+...+++++|+..++++++ +.|+ ...|..+...|
T Consensus 524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIY 601 (638)
T ss_pred hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 566667778888999999999999765 34665555667777788999999999999998 8888 56778888899
Q ss_pred HhcCChHHHHHHHHhC-CCCCCH
Q 036356 402 ARAGYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 402 ~~~g~~~~A~~~~~~m-~~~p~~ 423 (462)
-+.|+.+.|+.-|..+ ...|..
T Consensus 602 k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHccchHHHHhhHHHhcCCCcc
Confidence 9999999999888877 555543
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=3.8e-10 Score=106.93 Aligned_cols=209 Identities=15% Similarity=0.053 Sum_probs=141.3
Q ss_pred hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH----HHH
Q 036356 220 WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN----AMI 292 (462)
Q Consensus 220 ~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~li 292 (462)
+.|...++++.+ | +......+...+.+.|++++|.+.+..+.+.+.. +...+. ...
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-----------------~~~~~~~l~~~a~ 232 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-----------------DDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHH
Confidence 444444444444 3 3445667788889999999999999999998753 222121 011
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccc---hHHHHHHHH
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVM---RSAMTVGYG 367 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~ 367 (462)
..+...+..+++.+.+...... .....+.+...+..+...+...|+.++|.+++++..+ ||... .........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc
Confidence 1112222222222333331110 0111223778888899999999999999999998874 54432 122223334
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHccCChHH
Q 036356 368 LHGLGEEGWVLFHHIRKHGIEPRH---QHYARVVDLLARAGYSNHAFKFIMN--M-PIELRLSVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~l~~~~~~~~~~~~ 441 (462)
..++.+.+.+.++...+ ..|+. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++
T Consensus 311 ~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE 388 (409)
T ss_pred CCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 45778889999988887 56664 4566889999999999999999994 3 678999999999999999999999
Q ss_pred HHHHHHhh
Q 036356 442 NMLQTIRG 449 (462)
Q Consensus 442 a~~~~~~~ 449 (462)
|...+.+.
T Consensus 389 A~~~~~~~ 396 (409)
T TIGR00540 389 AAAMRQDS 396 (409)
T ss_pred HHHHHHHH
Confidence 98877765
No 36
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=9.7e-13 Score=83.55 Aligned_cols=50 Identities=38% Similarity=0.561 Sum_probs=48.5
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 186 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~ 186 (462)
||..+||++|++|++.|++++|.++|++| .+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M-----~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEM-----KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHH-----HHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999 899999999999999999975
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.36 E-value=3.1e-10 Score=110.19 Aligned_cols=293 Identities=13% Similarity=0.058 Sum_probs=159.0
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC-------CC
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KD 204 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~ 204 (462)
.|...|-.+...+- .++...++..|..-.. .....+-.+-....|.+...+...|++++|...|++... +|
T Consensus 412 ~d~~a~l~laql~e-~~d~~~sL~~~~~A~d-~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLE-QTDPWASLDAYGNALD-ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred ccHHHHHHHHHHHH-hcChHHHHHHHHHHHH-HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 34445554444443 3444444655554311 113344446677788888888888888888888875442 22
Q ss_pred cc-------hHHHHHHHHHhCc--hHHHHHHHhhhc--CCcch-HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHH
Q 036356 205 VV-------MRSAMIVGYGLHE--WSAFGSFDGLLS--NEENE-YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 272 (462)
Q Consensus 205 ~~-------~~~~li~~~~~~~--~~a~~~~~~m~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 272 (462)
.. -||. -..+-..+ +.|.+.|..+.+ |+-.. |--+.......+...+|...+.......-
T Consensus 490 e~~~~~lt~~YNl-arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~------- 561 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNL-ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS------- 561 (1018)
T ss_pred ccccchhHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-------
Confidence 21 1221 22222222 777788888877 55433 22232222344667777777777665432
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh------------cCC
Q 036356 273 ISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK------------CGS 340 (462)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~------------~g~ 340 (462)
.+...++-+-..+.+...+..|..-|...+. +....+|++..-+|.+.|.. .+.
T Consensus 562 ----------~np~arsl~G~~~l~k~~~~~a~k~f~~i~~----~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 562 ----------SNPNARSLLGNLHLKKSEWKPAKKKFETILK----KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred ----------CCcHHHHHHHHHHHhhhhhcccccHHHHHHh----hhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 3344444444455566666666665554321 12222454444444443321 123
Q ss_pred cchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 341 VDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 341 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.++|+++|.+..+ .|...=|-+.-.++..|++..|..+|....+... -...+|--+...|..+|++..|+++|+..
T Consensus 628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665543 2444555566666666677777777766666422 12345556666666667777776666654
Q ss_pred ----CCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 418 ----PIELRLSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 418 ----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
.-..+..+...|.+++.+.|.+.++...+...
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22345566666666776666666666555443
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=2.8e-10 Score=109.38 Aligned_cols=356 Identities=9% Similarity=-0.027 Sum_probs=204.4
Q ss_pred CCCCCCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHh
Q 036356 1 MQVAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDG 77 (462)
Q Consensus 1 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~ 77 (462)
|+..|+.||..||.++|.-||..|+.+.|- +|..|.-..... +-..++.+ ..+.++.+.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv----------~e~vf~~lv~sh~~And~Enp------ 78 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV----------REGVFRGLVASHKEANDAENP------ 78 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc----------cchhHHHHHhcccccccccCC------
Confidence 456799999999999999999999999888 888776554421 33344444 4555555555
Q ss_pred hcCCCcchHHHHHHhhcCccchhhHHHHHHH-HHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 036356 78 LLSNEENEYGTALDCSCDLEFLEQGKIVHGF-MIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL 156 (462)
Q Consensus 78 m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 156 (462)
..|...+|..|+.+|.+.||+.. .+..++ |.. ++..+...|.-..-..+
T Consensus 79 -kep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~----------------------------i~~sfs~~Gvgs~e~~f 128 (1088)
T KOG4318|consen 79 -KEPLADTYTNLLKAYRIHGDLIL-FEVVEQDLES----------------------------INQSFSDHGVGSPERWF 128 (1088)
T ss_pred -CCCchhHHHHHHHHHHhccchHH-HHHHHHHHHH----------------------------HHhhhhhhccCcHHHHH
Confidence 24666777777777777777665 222222 221 22233444444444444
Q ss_pred HHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC--CcchHHHHHHHHHhCc---hHHHHHHHhhhc
Q 036356 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAMIVGYGLHE---WSAFGSFDGLLS 231 (462)
Q Consensus 157 ~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~---~~a~~~~~~m~~ 231 (462)
+..+ -...+.-||..+ .+....-.|-++.+.+++..++.. +. +.-..++-+.... ++-...-+....
T Consensus 129 l~k~----~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e 200 (1088)
T KOG4318|consen 129 LMKI----HCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE 200 (1088)
T ss_pred Hhhc----ccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc
Confidence 4332 123334444433 334445556677777777666531 11 1111233333333 444444444444
Q ss_pred -CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 232 -NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 232 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
|+..+|..++.+..-.|+.+.|..++.+|.+.|++. +..-|-.++-+ .+...-++.++.-
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi----------------r~HyFwpLl~g---~~~~q~~e~vlrg 261 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI----------------RAHYFWPLLLG---INAAQVFEFVLRG 261 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc----------------ccccchhhhhc---CccchHHHHHHHH
Confidence 999999999999999999999999999999999963 33333444433 6666666666666
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChH--HHHHHHHHHHH---C
Q 036356 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGE--EGWVLFHHIRK---H 385 (462)
Q Consensus 311 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~---~ 385 (462)
|...|+.|+..|+..-+-.+.+.|....+....+.-.-.....+..+.++.....+.+ .+.-+.....+ .
T Consensus 262 -----mqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLl 336 (1088)
T KOG4318|consen 262 -----MQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLL 336 (1088)
T ss_pred -----HHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHh
Confidence 8899999999999888877777555222221111100011222333333322222221 11122222222 2
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHcc
Q 036356 386 GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-----PIEL-RLSVRRALLSAWKIP 436 (462)
Q Consensus 386 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p-~~~~~~~l~~~~~~~ 436 (462)
|+.-...+|...+. ...+|+-++..++...+ ...+ +.-.|..++..|.+.
T Consensus 337 g~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 337 GTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred ccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 55444444444333 33478888998888887 2333 233566666666544
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.34 E-value=5.6e-10 Score=105.81 Aligned_cols=287 Identities=12% Similarity=-0.057 Sum_probs=195.2
Q ss_pred hccCCChhhHHHHHHhh--cCCCcc-hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee--e
Q 036356 62 HLWSRTEWSAFGSFDGL--LSNEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT--L 136 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~--~ 136 (462)
....|+++.|.+.+... ..|+.. .+-....+..+.|+.+.|.+.+.+..+.. |+.. .
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~------------------p~~~l~~ 155 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA------------------GNDNILV 155 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CcCchHH
Confidence 77889999999999888 455533 34444667778899999999999987653 4443 3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc---chHHHHHH
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMIV 213 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~ 213 (462)
.-.....+...|+++.|.+.++.+ .+.. +-+..+...+...+...|++++|.+.++...+.+. ..+..+-.
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l-----~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKL-----LEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ 229 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-----HHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334577788899999999999997 3333 34567788899999999999999999888775422 11111000
Q ss_pred HHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293 (462)
Q Consensus 214 ~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 293 (462)
..+... ...+..+.+...+..+.+..... .+.+...+..+..
T Consensus 230 ---------------------~a~~~~----l~~~~~~~~~~~L~~~~~~~p~~-------------~~~~~~l~~~~a~ 271 (409)
T TIGR00540 230 ---------------------KAEIGL----LDEAMADEGIDGLLNWWKNQPRH-------------RRHNIALKIALAE 271 (409)
T ss_pred ---------------------HHHHHH----HHHHHHhcCHHHHHHHHHHCCHH-------------HhCCHHHHHHHHH
Confidence 001111 11122223333444444332100 0137888899999
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHH-HHHHHHH--HhcCCcchHHHHhccCCC--CC-c--cchHHHHHH
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN-TVLIDMY--AKCGSVDLAPMFFDRTLD--KD-V--VMRSAMTVG 365 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~~~~--~~-~--~~~~~li~~ 365 (462)
.+...|+.++|.+.+.+.+ + ..|+.... ..++..+ ...++.+.+.+.++...+ |+ . ....++...
T Consensus 272 ~l~~~g~~~~A~~~l~~~l-----~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGL-----K--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHCCChHHHHHHHHHHH-----h--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 9999999999999999843 2 23333210 0133333 335667778887776652 43 3 455688999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999995444347899999999999999999999999999874
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.33 E-value=6.3e-10 Score=107.37 Aligned_cols=320 Identities=13% Similarity=0.039 Sum_probs=235.9
Q ss_pred hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC
Q 036356 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 171 (462)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 171 (462)
.+...|+++.|..++.+.++..+ .+...|-+|...|-..|+.+++...+-. ...-.+
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp-----------------~~~~ay~tL~~IyEqrGd~eK~l~~~ll------AAHL~p 204 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDP-----------------RNPIAYYTLGEIYEQRGDIEKALNFWLL------AAHLNP 204 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCc-----------------cchhhHHHHHHHHHHcccHHHHHHHHHH------HHhcCC
Confidence 33344999999999999999876 7888999999999999999999988744 233344
Q ss_pred CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHH---HHHHHhCc--hHHHHHHHhhhc--C------CcchHH
Q 036356 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM---IVGYGLHE--WSAFGSFDGLLS--N------EENEYG 238 (462)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l---i~~~~~~~--~~a~~~~~~m~~--~------~~~~~~ 238 (462)
-|...|-.+.....+.|+++.|.-.|.+..+.++..|-.+ ...|-+.| ..|+.-|.++.. | ...+--
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 4678899999999999999999999999887555555544 35677778 899999999988 4 222334
Q ss_pred HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH---
Q 036356 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY--- 315 (462)
Q Consensus 239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--- 315 (462)
.++..+...++-+.|.+.++.....+-. ..+...++.++..|.+..+++.|.....+..+..
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~---------------~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKD---------------EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccc---------------cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 4566677777778899888888774332 3566778888888999999999988876633200
Q ss_pred -------------------HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC------CCccchHHHHHHHHhcC
Q 036356 316 -------------------IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD------KDVVMRSAMTVGYGLHG 370 (462)
Q Consensus 316 -------------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~ 370 (462)
-...+..++..++ -+.-++.+....+....+.....+ -+...|.-+..+|...|
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG 428 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence 0012233333331 122233344444444444443332 24557888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHccCChHHHHHHHHh
Q 036356 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
++.+|..+|..+......-+...|--+...|-..|.+++|.+.++.. ...|+.. .-.+|...+.+.|+.++|++.+.+
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999998644445778999999999999999999999998 5566544 556777888889999999999887
Q ss_pred hh
Q 036356 449 GI 450 (462)
Q Consensus 449 ~~ 450 (462)
+.
T Consensus 509 ~~ 510 (895)
T KOG2076|consen 509 II 510 (895)
T ss_pred cc
Confidence 65
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.3e-09 Score=93.25 Aligned_cols=286 Identities=13% Similarity=0.093 Sum_probs=190.4
Q ss_pred hccCCChhhHHHHHHhhcCC---CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee---
Q 036356 62 HLWSRTEWSAFGSFDGLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT--- 135 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~--- 135 (462)
+.-+.++++|+++|-+|... +..+--+|.+.+.+.|.++.|+.+++.+.++ ||..
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-------------------pdlT~~q 105 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-------------------PDLTFEQ 105 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------------------CCCchHH
Confidence 77778999999999999333 3445567888899999999999999998874 4432
Q ss_pred ---eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHH
Q 036356 136 ---LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI 212 (462)
Q Consensus 136 ---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li 212 (462)
..-.|..-|...|-+|.|..+|..+ ...+ ..-......|+..|-...+|++|+++-+++.+-+..+|+.-|
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L-----~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQL-----VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH-----hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH
Confidence 2345667789999999999999997 3222 222445677999999999999999999988877777777766
Q ss_pred HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356 213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292 (462)
Q Consensus 213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li 292 (462)
.-| |..+...+.-..+++.|..++....+... ..+..=-.+-
T Consensus 180 Aqf---------------------yCELAq~~~~~~~~d~A~~~l~kAlqa~~-----------------~cvRAsi~lG 221 (389)
T COG2956 180 AQF---------------------YCELAQQALASSDVDRARELLKKALQADK-----------------KCVRASIILG 221 (389)
T ss_pred HHH---------------------HHHHHHHHhhhhhHHHHHHHHHHHHhhCc-----------------cceehhhhhh
Confidence 544 45555556666677777777777766531 2233333344
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccchHHHHHHHHhcC
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHG 370 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 370 (462)
+.+...|+++.|.+.++. ....+..--..+...|..+|...|+.++....+.++.+ ++...-..+...-....
T Consensus 222 ~v~~~~g~y~~AV~~~e~-----v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~ 296 (389)
T COG2956 222 RVELAKGDYQKAVEALER-----VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQE 296 (389)
T ss_pred HHHHhccchHHHHHHHHH-----HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhh
Confidence 566777777777777777 44445444456666777777777777777777766653 33333333333333333
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 036356 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA---GYSNHAFKFIMNM 417 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 417 (462)
-.+.|...+.+-.. -.|+...+..|++.-... |.+.+-+.+++.|
T Consensus 297 G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 297 GIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred ChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 34555555555444 467777777777654432 3344445555555
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.7e-10 Score=107.80 Aligned_cols=268 Identities=16% Similarity=0.098 Sum_probs=207.2
Q ss_pred ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC------CCcchHHHHHHHHHhCc---
Q 036356 149 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD------KDVVMRSAMIVGYGLHE--- 219 (462)
Q Consensus 149 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~--- 219 (462)
+..+|...|... ...+.-+..+...+.++|...+++++|+++|+.+.+ .+...|++.+..+-+.-
T Consensus 334 ~~~~A~~~~~kl------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKL------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHhh------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence 467788888774 233333345667788999999999999999998874 36677888775543322
Q ss_pred hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC-CHhHHHHHHHHHHcC
Q 036356 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLWNAMISGYAKN 298 (462)
Q Consensus 220 ~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~li~~~~~~ 298 (462)
--|..+.+.. +....+|.++.++|.-.++.+.|++.|+..++.. | ...+|+-+-.-+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld------------------p~faYayTLlGhE~~~~ 468 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD------------------PRFAYAYTLLGHESIAT 468 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC------------------CccchhhhhcCChhhhh
Confidence 2222222222 1457899999999999999999999999998753 4 778888888888888
Q ss_pred CChhHHHHHhhHHHHHHHHhhCCCCchhHHHH---HHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCCh
Q 036356 299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV---LIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLG 372 (462)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 372 (462)
..+|.|...|+. .+..|+..||+ +.-.|.+.++++.|+--|++..+ .+.+....+...+.+.|+.
T Consensus 469 ee~d~a~~~fr~---------Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 469 EEFDKAMKSFRK---------ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred HHHHhHHHHHHh---------hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence 999999999987 34556656655 45679999999999999998875 4667777888889999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 373 EEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
++|++++++... +.|. ...--.-...+...+++++|+..++++ .+.|+ ...+..+.+.|.+.|+.+.|+..+--+
T Consensus 540 d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 540 DKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred hHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 999999999998 5564 344445566777889999999999999 55564 567888999999999999999888766
Q ss_pred hhc
Q 036356 450 IDE 452 (462)
Q Consensus 450 ~~~ 452 (462)
.+-
T Consensus 618 ~~l 620 (638)
T KOG1126|consen 618 LDL 620 (638)
T ss_pred hcC
Confidence 544
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=8.6e-10 Score=98.44 Aligned_cols=378 Identities=13% Similarity=0.017 Sum_probs=240.1
Q ss_pred hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceee--hhh--hccCCChhhHHHHHHhh--cCCCc------chHH
Q 036356 20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL--DLY--HLWSRTEWSAFGSFDGL--LSNEE------NEYG 87 (462)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~A~~~~~~m--~~~~~------~~~~ 87 (462)
|.......+|+..++.+++...- |+.... |.- +.+.+.+.+|+++++.. ..|+. ...+
T Consensus 211 y~~ndm~~ealntyeiivknkmf----------~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMF----------PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred hhhhHHHHHHhhhhhhhhccccc----------CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 33444566777777777766543 343322 222 88889999999998866 33322 2345
Q ss_pred HHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh------
Q 036356 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM------ 161 (462)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~------ 161 (462)
.+-..+.+.|.++.|..-|++..+.. ||..+--.|+-++..-|+-++..+.|.+|.
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~------------------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~ 342 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEA------------------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEI 342 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhC------------------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCC
Confidence 55557789999999999999988764 344332223333333455555555555543
Q ss_pred -------------------------------------------hhhhhhcCCCCCchH-------------HH-------
Q 036356 162 -------------------------------------------DYYIGKSEYRNNVIV-------------NT------- 178 (462)
Q Consensus 162 -------------------------------------------~~~~~~~~~~~~~~~-------------~~------- 178 (462)
...+...-+.||... |.
T Consensus 343 dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 343 DDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred CcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 000011112222110 00
Q ss_pred -HHHHHHHhcCCcccHHHHhhccCCCCcchHHHHH-----HHHHhCc---hHHHHHHHhhhcCCcchHHHH-----HHhh
Q 036356 179 -VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI-----VGYGLHE---WSAFGSFDGLLSNEENEYGTA-----LDCS 244 (462)
Q Consensus 179 -~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li-----~~~~~~~---~~a~~~~~~m~~~~~~~~~~l-----l~~~ 244 (462)
.-..-|.+.|+++.|++++.-..+.|..+-++-. --|.+.| ..|...-+.... ..-||.. -+..
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAALTNKGNIA 500 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHhhcCCcee
Confidence 0112366788888888888777665544432221 1223333 445554444433 2223222 2233
Q ss_pred cCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CC
Q 036356 245 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RN 323 (462)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p 323 (462)
.-.|+++.|...|.+.+...-. .....|| +--.+-..|++++|++.|-+. +++ ..
T Consensus 501 f~ngd~dka~~~ykeal~ndas----------------c~ealfn-iglt~e~~~~ldeald~f~kl-------h~il~n 556 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDAS----------------CTEALFN-IGLTAEALGNLDEALDCFLKL-------HAILLN 556 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchH----------------HHHHHHH-hcccHHHhcCHHHHHHHHHHH-------HHHHHh
Confidence 4678999999999998864321 1111222 223466789999999999762 222 33
Q ss_pred chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 036356 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVD 399 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 399 (462)
+..+...+...|....+...|++++-... ..|....+.|...|-+.|+-..|.+...+-.+ ..| +..+..=|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHH
Confidence 56666777888988999999999997665 35778889999999999999999887766554 555 5778888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HccCChHHHHHHHHhhhhcCC
Q 036356 400 LLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAW-KIPMQQWENMLQTIRGIDEGE 454 (462)
Q Consensus 400 ~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~ 454 (462)
-|....-+++|+..|++. -+.|+..-|..++..| .+.|++..|+..+. -..+.+
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk-~~hrkf 690 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK-DIHRKF 690 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH-HHHHhC
Confidence 889999999999999998 7889999999877655 56699999985554 344444
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=5.3e-09 Score=92.30 Aligned_cols=288 Identities=11% Similarity=-0.003 Sum_probs=185.9
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
-.-.|+|.+|+++..+- .......|.....+.-+.||.+.+-.++.+..+... .++...+-
T Consensus 94 ~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----------------~~~l~v~l 157 (400)
T COG3071 94 KLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----------------DDTLAVEL 157 (400)
T ss_pred HHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----------------CchHHHHH
Confidence 44567888888777766 233344566666667777888888888888777633 35556666
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhC
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 218 (462)
+........|+.+.|..-.++. .+.+ +-.+.+.....++|.+.|++..+..++.++.+.+..+-.-+.
T Consensus 158 trarlll~~~d~~aA~~~v~~l-----l~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~------ 225 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQL-----LEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA------ 225 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHH-----HHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH------
Confidence 6667777788888887777775 2222 334566677788888888888888887777654332211100
Q ss_pred chHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcC
Q 036356 219 EWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKN 298 (462)
Q Consensus 219 ~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 298 (462)
- --..+|..++.-....+..+.-...++..-+. .+.+...-.+++.-+.+.
T Consensus 226 ------~------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-----------------lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 226 ------R------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-----------------LRNDPELVVAYAERLIRL 276 (400)
T ss_pred ------H------HHHHHHHHHHHHHhccccchHHHHHHHhccHH-----------------hhcChhHHHHHHHHHHHc
Confidence 0 11235566666666666666555555554333 134555666777778888
Q ss_pred CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHH
Q 036356 299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEG 375 (462)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 375 (462)
|+.++|.++..+ ..+.+..|+... .-.+.+-++.+.-.+..++-. ..+...+.+|...|.+.+.+.+|
T Consensus 277 ~~~~~A~~~i~~-----~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 277 GDHDEAQEIIED-----ALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred CChHHHHHHHHH-----HHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 888888888877 445666666222 122334455544444444322 22445677788888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 376 WVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 376 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
...|+...+ ..|+..+|+.+..+|.+.|+.++|.+..++.
T Consensus 348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 888887776 7788888888888888888888888877764
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.4e-09 Score=95.00 Aligned_cols=204 Identities=12% Similarity=0.027 Sum_probs=119.1
Q ss_pred chHHHHHHHHHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc
Q 036356 206 VMRSAMIVGYGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280 (462)
Q Consensus 206 ~~~~~li~~~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (462)
.|+.++..-|+-.+ ++|...|++..+ |. ...|+.+.+-|..+.+...|..-|...++-.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~---------------- 394 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN---------------- 394 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC----------------
Confidence 34444444444444 677777777666 33 3445555566677777777777777666643
Q ss_pred CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCc
Q 036356 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDV 356 (462)
Q Consensus 281 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 356 (462)
+.|-..|-.+-.+|.-.+.+.-|+-.|++. ..++| |...|.+|.+.|.+.++.++|++.|..... .+.
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA-------~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKA-------LELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHH-------HhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 246667777777777777777777777662 33444 466677777777777777777777766542 334
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRAL 429 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 429 (462)
..+..|.+.|-+.++.++|...+++..+. |..-+ .....-|..-+.+.+++++|....... ...+...--+.|
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~L 546 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKAL 546 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHH
Confidence 56667777777777777777666665542 22222 222233444556666666665544444 223333333444
Q ss_pred HHHH
Q 036356 430 LSAW 433 (462)
Q Consensus 430 ~~~~ 433 (462)
++.+
T Consensus 547 lRei 550 (559)
T KOG1155|consen 547 LREI 550 (559)
T ss_pred HHHH
Confidence 4433
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.20 E-value=8.8e-10 Score=106.00 Aligned_cols=257 Identities=15% Similarity=0.118 Sum_probs=153.5
Q ss_pred HHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH
Q 036356 104 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 183 (462)
Q Consensus 104 ~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~ 183 (462)
.++..+...|+ .||.+||..+|.-|+..|+++.|- +|.-| +-...+.+...|+.++.+
T Consensus 11 nfla~~e~~gi----------------~PnRvtyqsLiarYc~~gdieaat-if~fm-----~~ksLpv~e~vf~~lv~s 68 (1088)
T KOG4318|consen 11 NFLALHEISGI----------------LPNRVTYQSLIARYCTKGDIEAAT-IFPFM-----EIKSLPVREGVFRGLVAS 68 (1088)
T ss_pred hHHHHHHHhcC----------------CCchhhHHHHHHHHcccCCCcccc-chhhh-----hcccccccchhHHHHHhc
Confidence 45677788888 999999999999999999999999 99998 677778889999999999
Q ss_pred HHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-hHHHHHHHh-h---hc------CCcchHHHHHHhhcCccchhh
Q 036356 184 YAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-WSAFGSFDG-L---LS------NEENEYGTALDCSCDLEFLEQ 252 (462)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~-~~a~~~~~~-m---~~------~~~~~~~~ll~~~~~~~~~~~ 252 (462)
+...++.+.+. .|...+|+.+..+|..+| -.+++.-++ + .. .....-..++..-|..+-...
T Consensus 69 h~~And~Enpk-------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 69 HKEANDAENPK-------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ccccccccCCC-------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 99999998886 788889999999999998 333333333 1 11 011111112221122222222
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH---HHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHH
Q 036356 253 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA---MISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVN 328 (462)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~ 328 (462)
|.......+-.|+ +.-++......|-..-++. +++-....+ ...+++.. +.+... .|+..+|
T Consensus 142 a~n~illlv~egl------waqllkll~~~Pvsa~~~p~~vfLrqnv~~n--tpvekLl~------~cksl~e~~~s~~l 207 (1088)
T KOG4318|consen 142 AENAILLLVLEGL------WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN--TPVEKLLN------MCKSLVEAPTSETL 207 (1088)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHhhCCcccccchHHHHHHHhccCC--chHHHHHH------HHHHhhcCCChHHH
Confidence 2222222221111 1111111000111111111 122111111 11122221 122222 4778888
Q ss_pred HHHHHHHHhcCCcchHHHHhccCCCC----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356 329 TVLIDMYAKCGSVDLAPMFFDRTLDK----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 404 (462)
.++++.-...|+++.|..++.+|.+. +..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+..+.+.
T Consensus 208 ~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 208 HAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 88888888888888888888888753 22222233333 667777777788888888888888888777777775
Q ss_pred CC
Q 036356 405 GY 406 (462)
Q Consensus 405 g~ 406 (462)
|.
T Consensus 285 ~~ 286 (1088)
T KOG4318|consen 285 GQ 286 (1088)
T ss_pred hh
Confidence 55
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.2e-08 Score=99.46 Aligned_cols=361 Identities=13% Similarity=0.035 Sum_probs=219.4
Q ss_pred hccCCChhhHHHHHHhh--cC----CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee
Q 036356 62 HLWSRTEWSAFGSFDGL--LS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~ 135 (462)
|...|++..++.+.+.+ .. .-..+|--+.+++-..|++++|.+.|.+..+... .--+.
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~----------------d~~~l 343 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN----------------DNFVL 343 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC----------------CCccc
Confidence 66667777777777766 11 1233466677777777777777777776665543 11133
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcC----CcccHHHHhhccCCC---CcchH
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG----SVDLAPMFFDRTLDK---DVVMR 208 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~---~~~~~ 208 (462)
.+--|...+.+.|+++.+...|+.. -...+.+..+..+|-..|+..+ ..+.|..++.+...+ |...|
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv------~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKV------LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHH------HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 3445667778888888888888774 2333445566666666666654 445666666655543 44455
Q ss_pred HHHHHHHHhCc-hHHHHHHHhhhc--------CCcchHHHHHHhhcCccchhhhHHHHHHHHHh---CCCcchH------
Q 036356 209 SAMIVGYGLHE-WSAFGSFDGLLS--------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKL---GLELESD------ 270 (462)
Q Consensus 209 ~~li~~~~~~~-~~a~~~~~~m~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------ 270 (462)
-.+-..+.... ..++.+|..... +-....|.+.......|+++.|...|...... ...+|..
T Consensus 418 l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 55555555555 333444443332 56667777877888888888888888887765 1222221
Q ss_pred -HHHHH--HHh-hcCCCCHhHHH-------HHHHHHHcC-------CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHH
Q 036356 271 -LLISL--TAV-CRYQPNVTLWN-------AMISGYAKN-------GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 332 (462)
Q Consensus 271 -~~~~l--~~~-~~~~~~~~~~~-------~li~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li 332 (462)
-||.- .+. |....-...|. ..|++|.+. +...+|...+...+ .- ..-++..+..+.
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l----~~--d~~np~arsl~G 571 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDAL----NI--DSSNPNARSLLG 571 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHH----hc--ccCCcHHHHHHH
Confidence 11111 111 11011111121 123344433 45666777766632 12 233444555566
Q ss_pred HHHHhcCCcchHHHHhccCCC-----CCccchHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCC-CHhHH
Q 036356 333 DMYAKCGSVDLAPMFFDRTLD-----KDVVMRSAMTVGYGL------------HGLGEEGWVLFHHIRKHGIEP-RHQHY 394 (462)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p-~~~~~ 394 (462)
..+.+..++..|.+-|+.+.+ +|..+.-+|...|.. .+..++|+++|.+..+ ..| |...-
T Consensus 572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAA 649 (1018)
T KOG2002|consen 572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAA 649 (1018)
T ss_pred HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhc
Confidence 677777778777775554432 344444444444432 2345788899988887 555 46667
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 395 ARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
+-+.-.++..|++.+|..+|... ......-+|-.+...|..+|++-.|++.+..-+..
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999998 33345567999999999999999999777665444
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=2.5e-08 Score=88.12 Aligned_cols=295 Identities=12% Similarity=0.006 Sum_probs=202.1
Q ss_pred ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCch
Q 036356 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 175 (462)
Q Consensus 96 ~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 175 (462)
.|++.+|+++..+-.+.+. .....|-.-..+-...|+.+.+-+++.+. .+..-.++..
T Consensus 97 eG~~~qAEkl~~rnae~~e-----------------~p~l~~l~aA~AA~qrgd~~~an~yL~ea-----ae~~~~~~l~ 154 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-----------------QPVLAYLLAAEAAQQRGDEDRANRYLAEA-----AELAGDDTLA 154 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-----------------chHHHHHHHHHHHHhcccHHHHHHHHHHH-----hccCCCchHH
Confidence 4677777777766555543 22233444445555667777777777764 3333344555
Q ss_pred HHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHH
Q 036356 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255 (462)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~ 255 (462)
.+-+..+.....||.+.|..-+++..+-.+ -+.........+|.+.|++.....
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~p--------------------------r~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTP--------------------------RHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCc--------------------------CChHHHHHHHHHHHHhccHHHHHH
Confidence 666666667777777777666655442111 234456677788889999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHH
Q 036356 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335 (462)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 335 (462)
+...+.+.|.-.++..- .....+|+.+++-....+..+.-...+++. ....+-++..-.+++.-+
T Consensus 209 ~l~~L~ka~~l~~~e~~---------~le~~a~~glL~q~~~~~~~~gL~~~W~~~------pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 209 ILPKLRKAGLLSDEEAA---------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQ------PRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHHccCCChHHHH---------HHHHHHHHHHHHHHhccccchHHHHHHHhc------cHHhhcChhHHHHHHHHH
Confidence 99999999875332221 122446777777666666666645555542 233445566667788899
Q ss_pred HhcCCcchHHHHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHH
Q 036356 336 AKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFK 412 (462)
Q Consensus 336 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 412 (462)
.++|+.++|.++.++..+ .|.. -.....+.+-++.+.-.+..++-.+. +-.| ..+.+|...|.+.+.|.+|..
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999887764 2333 33344566778888777777776653 4444 788899999999999999999
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCC
Q 036356 413 FIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTD 457 (462)
Q Consensus 413 ~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd 457 (462)
.|+.. ...|+..+|+.+..++.+.|+.++|-....+.+..-..|+
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99987 8899999999999999999999999877777664443333
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.8e-08 Score=86.46 Aligned_cols=282 Identities=14% Similarity=0.090 Sum_probs=200.8
Q ss_pred HhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHH-------HHHHHHHh
Q 036356 145 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS-------AMIVGYGL 217 (462)
Q Consensus 145 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~li~~~~~ 217 (462)
.-+.+.++|++.|-+| .+ +-+.+..+.-+|-+.|.+.|.+|.|+++-+.+.++...|++ .+-.-|..
T Consensus 46 LLs~Q~dKAvdlF~e~-----l~-~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 46 LLSNQPDKAVDLFLEM-----LQ-EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HhhcCcchHHHHHHHH-----Hh-cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 3457899999999998 22 33334556667889999999999999999887754333443 34455777
Q ss_pred Cc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhHHHHH
Q 036356 218 HE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAM 291 (462)
Q Consensus 218 ~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l 291 (462)
.| +.|..+|..+.. --....-.|+..|-...+|++|..+-+.+.+.+-.+. ... ...|.-+
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-------------~~eIAqfyCEL 186 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-------------RVEIAQFYCEL 186 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-------------hhHHHHHHHHH
Confidence 77 999999999987 2345667789999999999999999999988775421 011 2346667
Q ss_pred HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchh-HHHHHHHHHHhcCCcchHHHHhccCCCCCcc----chHHHHHHH
Q 036356 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV----MRSAMTVGY 366 (462)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~ 366 (462)
...+....+.+.|..++.+.+. ..|+.+ .--.+.+.+...|+++.|.+.|+...+.|.. +...|..+|
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlq-------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQ-------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHh-------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 7777778899999999988532 233322 2234557788899999999999998865443 456788999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHcc---CChHHH
Q 036356 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKF-IMNMPIELRLSVRRALLSAWKIP---MQQWEN 442 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~l~~~~~~~---~~~~~a 442 (462)
...|+.++...++.++.+. .+....-..+-+.-....-.+.|... .+.+.-+|+...+..|+..-... |...+.
T Consensus 260 ~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~s 337 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKES 337 (389)
T ss_pred HHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhh
Confidence 9999999999999999984 44444444444444444444555554 44557789999999999876554 335566
Q ss_pred HHHHHhhhhcCC
Q 036356 443 MLQTIRGIDEGE 454 (462)
Q Consensus 443 ~~~~~~~~~~~~ 454 (462)
+..+..|..+.+
T Consensus 338 L~~lr~mvge~l 349 (389)
T COG2956 338 LDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHHHHHH
Confidence 666777765543
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.8e-08 Score=90.47 Aligned_cols=273 Identities=15% Similarity=0.116 Sum_probs=209.3
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC------CcchHHHHHH
Q 036356 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK------DVVMRSAMIV 213 (462)
Q Consensus 140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~li~ 213 (462)
+..++-...+.+++.+-.+.. ...|++.+...-+-...+.-...|+++|+.+|+++.+. |..+|+.++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l-----~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L- 306 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERL-----SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL- 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH-
Confidence 345566667888888877776 67777777766666677777889999999999998853 445666655
Q ss_pred HHHhCchHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356 214 GYGLHEWSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289 (462)
Q Consensus 214 ~~~~~~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (462)
|.++....+..+..-.. -...|+..+.+-|+-.++.++|...|+..++.+. .....|+
T Consensus 307 -Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-----------------~~~~aWT 368 (559)
T KOG1155|consen 307 -YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-----------------KYLSAWT 368 (559)
T ss_pred -HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-----------------chhHHHH
Confidence 44444222222222211 5567888888889999999999999999998752 4567788
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHH
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVG 365 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 365 (462)
-|-.-|...++...|.+-+++.++ +.| |-..|-.|.++|.-.+...-|.-.|++.. ..|...|.+|..+
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvd-------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVD-------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC 441 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHh-------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 888999999999999999998542 333 66788999999999999999999999876 3588999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCC-CHHHHHHHHHHHHcc
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-------P-IEL-RLSVRRALLSAWKIP 436 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p-~~~~~~~l~~~~~~~ 436 (462)
|.+.++.++|.+.|......|-. +...|..|.+.|-+.++.++|...+++. + +.| .....-.|..-+.+.
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 99999999999999999985432 5688999999999999999999988765 3 223 222333466677778
Q ss_pred CChHHHHH
Q 036356 437 MQQWENML 444 (462)
Q Consensus 437 ~~~~~a~~ 444 (462)
+++++|-.
T Consensus 521 ~~~~~As~ 528 (559)
T KOG1155|consen 521 KDFDEASY 528 (559)
T ss_pred cchHHHHH
Confidence 88888764
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.13 E-value=4.8e-08 Score=91.44 Aligned_cols=382 Identities=9% Similarity=-0.058 Sum_probs=234.0
Q ss_pred CCCCCCCCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh-
Q 036356 3 VAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL- 78 (462)
Q Consensus 3 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m- 78 (462)
..|+..|...|-.=-..|-+.|.+..+++|...++..|++. .---.+|+.- |.+.+.++-|..+|...
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe--------ed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE--------EDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc--------chhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 45666677777777777878888888888888888888753 1112355544 66777777777777766
Q ss_pred --cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 036356 79 --LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL 156 (462)
Q Consensus 79 --~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 156 (462)
.+.+...|..+...--..|..+....++++....-+ .....|-....-+..+|+...|..+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-----------------kae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-----------------KAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-----------------cchhHHHHHHHHHHhcCCcHHHHHH
Confidence 455566677776666667777777778777776643 3444555555666777787777777
Q ss_pred HHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHHHhCc--hHHHHHHHhhhc-
Q 036356 157 FPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS- 231 (462)
Q Consensus 157 ~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~--~~a~~~~~~m~~- 231 (462)
+.+. .+. .+.+..+|-.-+..-....+++.|..+|.+... ++...|.--+..-.-.+ ++|.+++++-.+
T Consensus 607 l~~a-----f~~-~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 607 LDQA-----FEA-NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHH-----HHh-CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 7764 222 222566777777777777777777777776553 34444433222222222 777777776666
Q ss_pred -CCcc-hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhh
Q 036356 232 -NEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFP 309 (462)
Q Consensus 232 -~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 309 (462)
|+-. .|-.+-..+-+.++++.|...|..-.+. .+.....|-.+.+.=-+.|++-+|..+|+
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-----------------cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-----------------CPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-----------------CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 5533 3444445556666666666666543332 11234456666666666667777777776
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356 310 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386 (462)
Q Consensus 310 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 386 (462)
+. .- .-+-+...|-..|++=.+.|..+.|..+..+..+ .+...|..-|....+.++-.+....+++
T Consensus 744 ra-----rl-kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk----- 812 (913)
T KOG0495|consen 744 RA-----RL-KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK----- 812 (913)
T ss_pred HH-----Hh-cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh-----
Confidence 62 11 2233566677777777777777777766655542 2444565555555555554443333333
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHccCChHHHH
Q 036356 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWKIPMQQWENM 443 (462)
Q Consensus 387 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~ 443 (462)
+.-|.+..-.+...|....++++|.+.|.+. ...||.- +|..+...+.+.|.-++-.
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 3345566666666777777777777777776 5555433 6667777777777654444
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=7.6e-07 Score=80.56 Aligned_cols=358 Identities=10% Similarity=0.011 Sum_probs=199.3
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
-..++++..|..+|+.. ...+...|-..+.+=.+.+.+..|..++++.+..=+ ..|. .|-
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP----------------RVdq-lWy 145 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP----------------RVDQ-LWY 145 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc----------------hHHH-HHH
Confidence 34456677888888888 445566777778888888888899999888887643 1222 222
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHH
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYG 216 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~ 216 (462)
--+..--..|++..|.++|+.. ....|+...|++.|+.=.+...++.|..++++.. .|++.+|--..+-=.
T Consensus 146 KY~ymEE~LgNi~gaRqiferW-------~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~ 218 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERW-------MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEE 218 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHH
Confidence 2333334456666666666664 2356666666666666666666666666666543 466665555544444
Q ss_pred hCc--hHHHHHHHhhhc--CCcchHHHHHHhh----cCccchhhhHHHHHHHHHhCCCc-chHHHHHHHHh---hc----
Q 036356 217 LHE--WSAFGSFDGLLS--NEENEYGTALDCS----CDLEFLEQGKIVHGFMIKLGLEL-ESDLLISLTAV---CR---- 280 (462)
Q Consensus 217 ~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~---~~---- 280 (462)
++| ..|..+|+.... .|...-..+..++ .+...++.|.-+|...+.+=... ....|...+.. +|
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 444 555555555444 2222222222222 23444555555555544431111 01222222222 22
Q ss_pred -------------------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC------------------
Q 036356 281 -------------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN------------------ 323 (462)
Q Consensus 281 -------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p------------------ 323 (462)
.+-|-.+|--.++.--..|+.+...++|++.+ .+++|
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI------anvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI------ANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH------ccCCchhHHHHHHHHHHHHHHHH
Confidence 23355556666666666677777777765532 12222
Q ss_pred --------------------------chhHHHHHHHHH----HhcCCcchHHHHhccCC--CCCccchHHHHHHHHhcCC
Q 036356 324 --------------------------NVIVNTVLIDMY----AKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGL 371 (462)
Q Consensus 324 --------------------------~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~ 371 (462)
...||..+=-.| .++.++..|.+++.... -|-..++...|..-.+.+.
T Consensus 373 lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLRE 452 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Confidence 122222222222 23444555555554443 2555566666666666677
Q ss_pred hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHccCChHHHHHHH
Q 036356 372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNMPIEL----RLSVRRALLSAWKIPMQQWENMLQT 446 (462)
Q Consensus 372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~ 446 (462)
++.+..++++..+ ..|. ..+|.-....=...|+++.|..+|+-.--+| -...|.+.+..=...|.++.|..++
T Consensus 453 fDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 453 FDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred HHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 7777777777776 6664 5566666666666777777777777662122 3446666666666677777776666
Q ss_pred Hhhhh
Q 036356 447 IRGID 451 (462)
Q Consensus 447 ~~~~~ 451 (462)
.+.++
T Consensus 531 erlL~ 535 (677)
T KOG1915|consen 531 ERLLD 535 (677)
T ss_pred HHHHH
Confidence 55544
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.04 E-value=4.9e-08 Score=85.17 Aligned_cols=190 Identities=11% Similarity=-0.023 Sum_probs=152.5
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 314 (462)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+.+.+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-- 92 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-----------------PDDYLAYLALALYYQQLGELEKAEDSFRRAL-- 92 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 456667788889999999999999988754 2456778888899999999999999999843
Q ss_pred HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-----CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 315 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 389 (462)
... +.+...+..+...+...|++++|.+.++...+ .....+..+...+...|++++|...+.+..+ ..|
T Consensus 93 ---~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 166 (234)
T TIGR02521 93 ---TLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDP 166 (234)
T ss_pred ---hhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCc
Confidence 222 23456777888899999999999999998763 1234567788889999999999999999988 455
Q ss_pred C-HhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 390 R-HQHYARVVDLLARAGYSNHAFKFIMNM-PI-ELRLSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
+ ...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.++|......+
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5 668888999999999999999999987 32 335667778888888999998888665443
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=2.8e-08 Score=86.68 Aligned_cols=196 Identities=15% Similarity=0.117 Sum_probs=143.8
Q ss_pred chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhh
Q 036356 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253 (462)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a 253 (462)
...+..+...|...|++++|...+++..+.++ .+...+..+...+...|++++|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--------------------------~~~~~~~~la~~~~~~~~~~~A 84 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP--------------------------DDYLAYLALALYYQQLGELEKA 84 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------------ccHHHHHHHHHHHHHcCCHHHH
Confidence 34455556666666666666666655432211 2234556667778888999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHH
Q 036356 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 333 (462)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 333 (462)
.+.++...+... .+...+..+...+...|++++|.+.+.+.+. ..........+..+..
T Consensus 85 ~~~~~~al~~~~-----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 85 EDSFRRALTLNP-----------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE----DPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHHhhCC-----------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh----ccccccchHHHHHHHH
Confidence 999998887642 4556777888889999999999999998532 1112223456677788
Q ss_pred HHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 036356 334 MYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 410 (462)
.+...|++++|...+++..+ | +...+..+...+...|++++|...+++.... .+.+...+..+...+...|+.++|
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 89999999999999988763 3 4557788889999999999999999999885 233467777888888999999999
Q ss_pred HHHHHhC
Q 036356 411 FKFIMNM 417 (462)
Q Consensus 411 ~~~~~~m 417 (462)
..+.+.+
T Consensus 223 ~~~~~~~ 229 (234)
T TIGR02521 223 QRYGAQL 229 (234)
T ss_pred HHHHHHH
Confidence 9987765
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.01 E-value=1.1e-06 Score=82.67 Aligned_cols=343 Identities=9% Similarity=-0.054 Sum_probs=240.3
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHH----HhcCCcchhHHHHHhhhcCCCCCe
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMI----KLGLELESDLLISLTAVCRYQPNV 134 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~g~~~~~~~l~~~~~~~~~~p~~ 134 (462)
+++..-++.|..+++.. ++.+...|.+....=-+.|+.+...+++++-. ..|+ ..+.
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv----------------~i~r 479 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV----------------EINR 479 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce----------------eecH
Confidence 44445566666666666 66667777777777777777777777766533 3455 5666
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC--chHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHH
Q 036356 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRS 209 (462)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~ 209 (462)
.-|-.=...|-+.|..-.+..+.... ..-|+.-. ..||+.-...|.+.+.++-|..+|....+ .+...|.
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~av-----igigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWl 554 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAV-----IGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWL 554 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHH-----HhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHH
Confidence 66666666677777777777777664 45554332 45677777777777877777777766553 3445565
Q ss_pred HHHHHHHhCc--hHHHHHHHhhhc--CCcc-hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC
Q 036356 210 AMIVGYGLHE--WSAFGSFDGLLS--NEEN-EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN 284 (462)
Q Consensus 210 ~li~~~~~~~--~~a~~~~~~m~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (462)
.....--..| ++-..+|++... |-.. .|-......-..|++..|..++....+.. +.+
T Consensus 555 ra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-----------------pns 617 (913)
T KOG0495|consen 555 RAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-----------------PNS 617 (913)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-----------------CCc
Confidence 5554444455 777777777777 4433 34444455567788999998888888764 246
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CCc-cchHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDV-VMRSA 361 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~ 361 (462)
...|-+-+.....+.++++|..+|.+ ..+..|+...|..-+..---.+..++|.+++++..+ |+. ..|-.
T Consensus 618 eeiwlaavKle~en~e~eraR~llak-------ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm 690 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAK-------ARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM 690 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHH-------HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH
Confidence 77888888888889999999999877 456778888887777777778888999998887764 443 35666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCC
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQ 438 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~ 438 (462)
+...+-+.++++.|.+.+..=.+ .-|+ ...|-.|...=-+.|.+-+|..+++.. .-+.+...|-..++.=.+.|+
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 66777777788888777665544 4455 556777777777788899999999887 434577788889999899999
Q ss_pred hHHHHHHHHhhhh
Q 036356 439 QWENMLQTIRGID 451 (462)
Q Consensus 439 ~~~a~~~~~~~~~ 451 (462)
.+.|...+-+.++
T Consensus 769 ~~~a~~lmakALQ 781 (913)
T KOG0495|consen 769 KEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHHHHHH
Confidence 8888766655554
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=9e-08 Score=90.45 Aligned_cols=102 Identities=18% Similarity=0.122 Sum_probs=73.6
Q ss_pred cchHHHHHHhhcCccchhhHHHHHHHHHHh-----cCCcchhHHHHHhhhcCCCCCeee-HHHHHHHHHhCCChhHHHHH
Q 036356 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKL-----GLELESDLLISLTAVCRYQPNVTL-RNAMISGYAKNGYAEEAVKL 156 (462)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~~~~~~~l~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~ 156 (462)
..++..+...|...|+++.|..++++..+. |. ..|...+ .+.+...|...+++++|..+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~---------------~hl~va~~l~~~a~~y~~~~k~~eAv~l 263 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL---------------KHLVVASMLNILALVYRSLGKYDEAVNL 263 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc---------------cCHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 457777999999999999999999998876 21 1244433 33467788999999999999
Q ss_pred HHHhhhhhhhhcC-CCCC-chHHHHHHHHHHhcCCcccHHHHhhc
Q 036356 157 FPKWMDYYIGKSE-YRNN-VIVNTVLIDMYAKCGSVDLAPMFFDR 199 (462)
Q Consensus 157 ~~~m~~~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (462)
|+++........| ..|. ..+++.|..+|.+.|++++|...+++
T Consensus 264 y~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 264 YEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 9998532222222 2232 34677788889999999998887764
No 57
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=3.4e-07 Score=82.75 Aligned_cols=362 Identities=11% Similarity=0.078 Sum_probs=224.7
Q ss_pred CCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCC-cchHHHHHHhhcCcc
Q 036356 24 PSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNE-ENEYGTALDCSCDLE 97 (462)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~-~~~~~~ll~~~~~~~ 97 (462)
++...|.++|+..+.... .++..|-.. -.++.....|..+++.. .-|. ...|-..+..=-..|
T Consensus 87 ~e~~RARSv~ERALdvd~-----------r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDY-----------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHHHHHHhccc-----------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 345556777777665543 344444433 55666667777777766 2232 234445555555567
Q ss_pred chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHH
Q 036356 98 FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 177 (462)
Q Consensus 98 ~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 177 (462)
++..|.++|++=... .|+...|++.|+--.+.+.++.|..+|+... -+.|++.+|
T Consensus 156 Ni~gaRqiferW~~w------------------~P~eqaW~sfI~fElRykeieraR~IYerfV-------~~HP~v~~w 210 (677)
T KOG1915|consen 156 NIAGARQIFERWMEW------------------EPDEQAWLSFIKFELRYKEIERARSIYERFV-------LVHPKVSNW 210 (677)
T ss_pred ccHHHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------eecccHHHH
Confidence 777777777766554 5677777777777777777777777777751 134667776
Q ss_pred HHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHH----------------------------------------
Q 036356 178 TVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGY---------------------------------------- 215 (462)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~---------------------------------------- 215 (462)
---.+.=-++|++..|..+++...+ .|...-..+..+|
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 6666666666776666666654331 0100001111111
Q ss_pred ---HhC-c-hHHHHH-----HHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCc-ch------------
Q 036356 216 ---GLH-E-WSAFGS-----FDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL-ES------------ 269 (462)
Q Consensus 216 ---~~~-~-~~a~~~-----~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~------------ 269 (462)
+.. | ++++-- ++.+.+ -|-.+|--.+..-...|+.+...++|+..+.. ++| ..
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHH
Confidence 110 1 222111 111222 23334444555555667777777777776653 222 11
Q ss_pred -----------------HHHHHHHHhhcCCCCHhHHHHHHHHHH----cCCChhHHHHHhhHHHHHHHHhhCCCCchhHH
Q 036356 270 -----------------DLLISLTAVCRYQPNVTLWNAMISGYA----KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 328 (462)
Q Consensus 270 -----------------~~~~~l~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 328 (462)
.+|...+.. ++....||..+--.|+ +..++..|.++++. .-|.-|-..+|
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~-------AIG~cPK~KlF 440 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN-------AIGKCPKDKLF 440 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH-------HhccCCchhHH
Confidence 111111110 3445566666554444 56788889888887 45888989999
Q ss_pred HHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhc
Q 036356 329 TVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~ 404 (462)
-..|..=.+.++++.+.+++++..+ .|..+|......-...|+.+.|..+|.-..+. .+......|...|+-=...
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~ 520 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE 520 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc
Confidence 9999998999999999999998874 37788888888888899999999999999875 2333356778888888899
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036356 405 GYSNHAFKFIMNM-PIELRLSVRRALLS 431 (462)
Q Consensus 405 g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 431 (462)
|.++.|..+++.+ ...+...+|-++..
T Consensus 521 ~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 521 GEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred chHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 9999999999987 33444456655543
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.5e-07 Score=85.45 Aligned_cols=279 Identities=12% Similarity=0.001 Sum_probs=212.5
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
+......-..-|-..+++++..++.+...+..+ +....+..=|.++...|+..+-..+=.+|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-----------------fh~~~~~~~ia~l~el~~~n~Lf~lsh~L- 304 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-----------------FHLPCLPLHIACLYELGKSNKLFLLSHKL- 304 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-----------------CCcchHHHHHHHHHHhcccchHHHHHHHH-
Confidence 344445555666677899999999999988876 78888888888999999988877777775
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCc--hHHHHHHHhhhc--C-C
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-E 233 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~ 233 (462)
....+-...+|-++.-.|.-.|+..+|.+.|.+-.. .=...|-....+|+-.+ +.|+..+...-+ | .
T Consensus 305 -----V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 305 -----VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred -----HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 233455678999999999999999999999987553 34467888888888887 888877776665 2 2
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
--.+--+---|.+.++++-|.++|.+..... +-|....+-+--.....+.+.+|..+|+..+.
T Consensus 380 hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----------------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 380 HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----------------PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred cchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----------------CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 2223334455778899999999998876642 24666677776667778899999999988662
Q ss_pred HHHHhhCCC--CchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356 314 YYIGKSEYR--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388 (462)
Q Consensus 314 ~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 388 (462)
.++..+-+ -...+++.|..+|.+.+..++|+..|+... ..|..++.++...|...|+++.|.+.|.+... +.
T Consensus 443 -~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~ 519 (611)
T KOG1173|consen 443 -VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LK 519 (611)
T ss_pred -HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cC
Confidence 12222221 245678888999999999999999999765 56888999999999999999999999999887 89
Q ss_pred CCHhHHHHHHHHHHh
Q 036356 389 PRHQHYARVVDLLAR 403 (462)
Q Consensus 389 p~~~~~~~li~~~~~ 403 (462)
|+..+-..++..+..
T Consensus 520 p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 520 PDNIFISELLKLAIE 534 (611)
T ss_pred CccHHHHHHHHHHHH
Confidence 998777777765543
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.6e-07 Score=85.04 Aligned_cols=203 Identities=12% Similarity=-0.036 Sum_probs=115.6
Q ss_pred hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 036356 220 WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA 296 (462)
Q Consensus 220 ~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 296 (462)
..|..-|+.... |. ...|-.+...|....+-++..+.|+...+.+.. .|| +|..=...+.
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---------------n~d--vYyHRgQm~f 405 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE---------------NPD--VYYHRGQMRF 405 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---------------CCc--hhHhHHHHHH
Confidence 666666766666 22 223666777777888888888888877765532 233 3333333344
Q ss_pred cCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCCh
Q 036356 297 KNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLG 372 (462)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~ 372 (462)
-.+++++|..-|++. ..+.|+ +..|--+--+.-+.++++++...|++..+ | -+..|+.....+...+++
T Consensus 406 lL~q~e~A~aDF~Ka-------i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKA-------ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHH-------hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 456666776666662 233332 34444444444556667777777766653 3 344666666666677777
Q ss_pred HHHHHHHHHHHHCCCCCC---------HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCChHH
Q 036356 373 EEGWVLFHHIRKHGIEPR---------HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~ 441 (462)
+.|.+.|+...+ +.|+ ......++..-. .+++..|.+++++. .+.|. ...|.+|...-+++|+.++
T Consensus 479 d~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 479 DKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHHHh--hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 777777766665 3333 111111221112 26666677776666 44453 3466666666677777777
Q ss_pred HHHHHHhh
Q 036356 442 NMLQTIRG 449 (462)
Q Consensus 442 a~~~~~~~ 449 (462)
|++.|++.
T Consensus 556 AielFEks 563 (606)
T KOG0547|consen 556 AIELFEKS 563 (606)
T ss_pred HHHHHHHH
Confidence 76666543
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=1.6e-07 Score=88.76 Aligned_cols=246 Identities=13% Similarity=0.050 Sum_probs=172.6
Q ss_pred chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcch-HHHHHHhhcCccchhh
Q 036356 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENE-YGTALDCSCDLEFLEQ 252 (462)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~-~~~ll~~~~~~~~~~~ 252 (462)
..+...+...|...|+++.|+.+++...+. +-..+... -|...+ .+.+...|...+++++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-------l~k~~G~~------------hl~va~~l~~~a~~y~~~~k~~e 259 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-------LEKTSGLK------------HLVVASMLNILALVYRSLGKYDE 259 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------HHHccCcc------------CHHHHHHHHHHHHHHHHhccHHH
Confidence 456666889999999999999998764421 00000000 011111 2245667788899999
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHhhc-CCC-CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-Cch-hHH
Q 036356 253 GKIVHGFMIKLGLELESDLLISLTAVCR-YQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NNV-IVN 328 (462)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~~-~~~ 328 (462)
|..+|+.+..-- ...+| ..| -+.+++.|-.+|.+.|++++|...+++.+.-.-...|.. |.+ ..+
T Consensus 260 Av~ly~~AL~i~-----------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 260 AVNLYEEALTIR-----------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHHHHHHHH-----------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 999998876531 11122 122 245688888899999999999999998765222222222 222 345
Q ss_pred HHHHHHHHhcCCcchHHHHhccCC-------CCC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-
Q 036356 329 TVLIDMYAKCGSVDLAPMFFDRTL-------DKD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH------GIEPR- 390 (462)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~- 390 (462)
+.+...|+..+++++|..+++... .++ ..+++.|...|...|++++|.+++++.... +..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 667778889999999998887654 122 247899999999999999999999987765 22333
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMNM--------PIELR-LSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
...++.+...|.+.+++++|.++|.+. +-.|+ ..+|..|...|...|+++.|.......
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 567889999999999999999988876 23343 458999999999999999998665543
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=98.92 E-value=9.6e-08 Score=94.21 Aligned_cols=228 Identities=11% Similarity=-0.028 Sum_probs=125.6
Q ss_pred cchHHHHHHhhc-----CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHH---------hCC
Q 036356 83 ENEYGTALDCSC-----DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYA---------KNG 148 (462)
Q Consensus 83 ~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~---------~~g 148 (462)
...|...+++.. ..++++.|...|++..+..+ -+...|..+..++. ..+
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-----------------~~a~a~~~La~~~~~~~~~g~~~~~~ 318 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-----------------NSIAPYCALAECYLSMAQMGIFDKQN 318 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-----------------ccHHHHHHHHHHHHHHHHcCCcccch
Confidence 345556666532 22456789999999887754 34445655554443 234
Q ss_pred ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHh
Q 036356 149 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228 (462)
Q Consensus 149 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~ 228 (462)
++++|...+++. .+. -+-+...+..+...+...|++++|...|++..+.++.
T Consensus 319 ~~~~A~~~~~~A-----l~l-dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---------------------- 370 (553)
T PRK12370 319 AMIKAKEHAIKA-----TEL-DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI---------------------- 370 (553)
T ss_pred HHHHHHHHHHHH-----Hhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------
Confidence 478888888875 222 1234566777777777888888888888776532221
Q ss_pred hhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCH-hHHHHHHHHHHcCCChhHHHHH
Q 036356 229 LLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLWNAMISGYAKNGYAEEAVKL 307 (462)
Q Consensus 229 m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~ 307 (462)
+...+..+..++...|++++|...++...+.. |+. ..+..+...+...|++++|...
T Consensus 371 ----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------------------P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 371 ----SADIKYYYGWNLFMAGQLEEALQTINECLKLD------------------PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 12233344445556666666766666666643 321 1222233334456666777666
Q ss_pred hhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356 308 FPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIR 383 (462)
Q Consensus 308 ~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 383 (462)
+.+. .... .| +...+..+..+|...|+.++|...++++.. |+ ....+.+...|+..| ++|...++.+.
T Consensus 429 ~~~~-----l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 429 GDEL-----RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHH-----HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 6652 2221 12 233345555566666777777666666542 21 122333444445444 35555555555
Q ss_pred HC
Q 036356 384 KH 385 (462)
Q Consensus 384 ~~ 385 (462)
+.
T Consensus 501 ~~ 502 (553)
T PRK12370 501 ES 502 (553)
T ss_pred HH
Confidence 43
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=98.89 E-value=4.8e-07 Score=89.35 Aligned_cols=203 Identities=10% Similarity=-0.065 Sum_probs=148.1
Q ss_pred hHHHHHHHhhhc--CCcc-hHHHHHHhhc---------CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhH
Q 036356 220 WSAFGSFDGLLS--NEEN-EYGTALDCSC---------DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287 (462)
Q Consensus 220 ~~a~~~~~~m~~--~~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (462)
++|...|++..+ |+.. .|..+..++. ..+++++|...++...+.. +.+...
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-----------------P~~~~a 340 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-----------------HNNPQA 340 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----------------CCCHHH
Confidence 788899998888 5543 3433333322 3456889999999998864 246777
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CCcc-chHHHH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVV-MRSAMT 363 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li 363 (462)
+..+...+...|++++|...|++.+ + ..|+ ...+..+...|...|++++|...+++..+ |+.. .+..+.
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al-----~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQAN-----L--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-----H--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 8888888999999999999999943 2 2344 56777888899999999999999999874 4432 334445
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHccCChH
Q 036356 364 VGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWKIPMQQW 440 (462)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~ 440 (462)
..+...|++++|...+++..+.. .|+ ...+..+..++...|++++|...++++ ...|+.. .++.+...|+..|+
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 490 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE-- 490 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--
Confidence 56777899999999999987632 354 455777888889999999999999998 4455533 45566667777774
Q ss_pred HHHHHHHhh
Q 036356 441 ENMLQTIRG 449 (462)
Q Consensus 441 ~a~~~~~~~ 449 (462)
+|...+.+.
T Consensus 491 ~a~~~l~~l 499 (553)
T PRK12370 491 RALPTIREF 499 (553)
T ss_pred HHHHHHHHH
Confidence 555445443
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=2.6e-07 Score=88.41 Aligned_cols=291 Identities=13% Similarity=0.065 Sum_probs=182.9
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|++.++.- +.............+.+.|+.++|..++..+.++++ .|..-|.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-----------------dn~~Yy~ 76 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-----------------DNYDYYR 76 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------------CcHHHHH
Confidence 78889999999999887 444455677778888899999999999999999875 5555566
Q ss_pred HHHHHHHhCC-----ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcc-cHHHHhhccCCCCcchHHHHH
Q 036356 139 AMISGYAKNG-----YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD-LAPMFFDRTLDKDVVMRSAMI 212 (462)
Q Consensus 139 ~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~~li 212 (462)
.+..+..... +.+...++|+++ .... |.......+.-.+....++. .+...+..+..+++.+
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l------~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs----- 144 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDEL------AEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS----- 144 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHH------HHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch-----
Confidence 6666653332 466777778775 2222 22222211111111111111 1122222222333322
Q ss_pred HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHh----CCCcchHHHHHHHHhhcCCCCHhHH
Q 036356 213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL----GLELESDLLISLTAVCRYQPNVTLW 288 (462)
Q Consensus 213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (462)
+|+.+-..|......+-...++...... +-.+... ..-...|....|
T Consensus 145 -----------------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~------~~~~~~p~~~lw 195 (517)
T PF12569_consen 145 -----------------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD------DEEKEPPSTLLW 195 (517)
T ss_pred -----------------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc------ccccCCchHHHH
Confidence 2333333333333333333333333322 1100000 000013555444
Q ss_pred --HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHH
Q 036356 289 --NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAM 362 (462)
Q Consensus 289 --~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 362 (462)
..+...|...|++++|+++.++.+ ...|+ +..|..-.+.|-+.|++++|....+.... .|...-+..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI-------~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~ 268 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI-------EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKC 268 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 555677889999999999999854 23565 67788888999999999999999998774 467777888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhH------H--HHHHHHHHhcCChHHHHHHHHhC
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH------Y--ARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------~--~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+..+.++|++++|.+++....+.+..|-... | .....+|.+.|++..|++-|..+
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999998876554322 2 44667899999999998876655
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=1.3e-06 Score=83.62 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=192.7
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHH-HHHHH-
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAM-IVGYG- 216 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~l-i~~~~- 216 (462)
...+...|++++|++.+++ ....+.............+.+.|+.++|..++..+.+ |+-..|... ..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~------~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEK------NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHCCCHHHHHHHHHh------hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 3556889999999999988 4555655567778889999999999999999999985 444444443 44431
Q ss_pred --h-C--c-hHHHHHHHhhhc--CCcchHHHHHHhhcCccch-hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhH
Q 036356 217 --L-H--E-WSAFGSFDGLLS--NEENEYGTALDCSCDLEFL-EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL 287 (462)
Q Consensus 217 --~-~--~-~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (462)
. . . +....+++++.. |.......+.-.+.....+ ..+...+..+.+.|++ .+
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-------------------sl 145 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-------------------SL 145 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-------------------hH
Confidence 1 1 2 677888888877 7666665555444443333 3455666777777763 33
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh----------CCCCchh--HHHHHHHHHHhcCCcchHHHHhccCCC--
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS----------EYRNNVI--VNTVLIDMYAKCGSVDLAPMFFDRTLD-- 353 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~-- 353 (462)
|+.+-..|....+.+-..+++.....+ +... .-.|+.. ++.-+...|...|++++|...+++..+
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~-l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht 224 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNS-LESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT 224 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHh-hcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 455555565555555555555553322 1111 1234443 445567778899999999999998774
Q ss_pred CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC------
Q 036356 354 KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM---PIELR------ 422 (462)
Q Consensus 354 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~------ 422 (462)
|+ +..|..-.+.+-+.|++++|.+.++..+. +.+. ...=+-.+..+.++|+.++|.+++... +..|.
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 43 44677778889999999999999999998 5554 444556777888999999999999888 22222
Q ss_pred HHHH--HHHHHHHHccCChHHHHHHHHh
Q 036356 423 LSVR--RALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 423 ~~~~--~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
..+| ..-..+|.+.|++..|+..+..
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2244 4567899999999999866654
No 65
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=4.1e-09 Score=59.99 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=30.4
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 385 HGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 385 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+|+.||..||++||.+||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478999999999999999999999999999988
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.8e-06 Score=75.70 Aligned_cols=290 Identities=14% Similarity=0.010 Sum_probs=188.9
Q ss_pred CCeeeHHHHHHHHH--hCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHH
Q 036356 132 PNVTLRNAMISGYA--KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 209 (462)
Q Consensus 132 p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 209 (462)
|...+...-+.+++ -.++...|...+-.. ....-++-|+.....+.+.+...|+.++|+..|++...-|+.+..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~l----e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~ 267 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLML----HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE 267 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHH----HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence 33333344454443 345555555554443 145667888999999999999999999999999987755544433
Q ss_pred HH---HHHHHhCc--hHHHHHHHhhhcC---CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcC
Q 036356 210 AM---IVGYGLHE--WSAFGSFDGLLSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281 (462)
Q Consensus 210 ~l---i~~~~~~~--~~a~~~~~~m~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (462)
.| .-.+.+.| +....+...+... +...|-.-....-..++++.|+.+-+..++..
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~----------------- 330 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE----------------- 330 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----------------
Confidence 32 11122333 4444444444442 22233333334445677777777776666543
Q ss_pred CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCcc
Q 036356 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVV 357 (462)
Q Consensus 282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 357 (462)
..++..+-.--..+...|++++|.-.|+.. ....| +...|.-|+..|...|++.+|...-+... ..+..
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~A-------q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTA-------QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHH-------HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 134444444455677889999998888873 34554 57889999999999999888776554332 22333
Q ss_pred chHHHH-HHHHhc-CChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 036356 358 MRSAMT-VGYGLH-GLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAW 433 (462)
Q Consensus 358 ~~~~li-~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~ 433 (462)
+.+.+. ..|.-. .--++|.+++++-.+ +.|+ ....+.+...+...|..++++.++++. ...||...-+.|.+.+
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIM 481 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHH
Confidence 333331 222221 223788888888777 7787 667788888888889999999998887 6678888888888888
Q ss_pred HccCChHHHHHHHHhhhh
Q 036356 434 KIPMQQWENMLQTIRGID 451 (462)
Q Consensus 434 ~~~~~~~~a~~~~~~~~~ 451 (462)
...+...+|+..+...++
T Consensus 482 ~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 888888888877765543
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=5.8e-08 Score=83.47 Aligned_cols=222 Identities=13% Similarity=-0.002 Sum_probs=134.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHH-HHHH
Q 036356 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSA-MIVG 214 (462)
Q Consensus 138 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~-li~~ 214 (462)
+-+..+|.+.|.+.+|.+.|+.- ..-.|-+.||-.|-+.|-+..+++.|+.++.+-.+ |..+||-. +.+.
T Consensus 227 ~Q~gkCylrLgm~r~Aekqlqss-------L~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSS-------LTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHH-------hhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 46778888999999998888773 23355667777788889999999999998887764 44444322 2233
Q ss_pred HHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356 215 YGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289 (462)
Q Consensus 215 ~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (462)
+-..+ ++|.++|+...+ .++.....+...|.-.++.+.|.+.|..+.+.|+ -+...|+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-----------------~speLf~ 362 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-----------------QSPELFC 362 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----------------CChHHHh
Confidence 32223 666666666655 3445555555556666667777777777777765 3556666
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHH
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTV 364 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 364 (462)
.+--+|.-.++++-++.-|.+.+. .--.|+ ..+|-.+-......||+..|.+.|+-... .+...+|.|.-
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAls-----tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALS-----TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHh-----hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 666666666666666666666321 111121 23444444455555666666666665442 13345555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHGIEPR 390 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 390 (462)
.-.+.|+++.|..++....+ +.|+
T Consensus 438 L~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHhhcCchHHHHHHHHHhhh--hCcc
Confidence 55666666666666666555 4454
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.2e-06 Score=79.41 Aligned_cols=399 Identities=11% Similarity=-0.070 Sum_probs=237.4
Q ss_pred hHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhh--cCCCcchHHHH
Q 036356 13 PPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGL--LSNEENEYGTA 89 (462)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m--~~~~~~~~~~l 89 (462)
|..+++-+....++..|.-+-+++...+. .|+..-|..- +.-.|++++|..++..- ...|..+....
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~----------dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~ 88 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTN----------DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLA 88 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccC----------ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44444544455555555555555554443 3444444433 77788888888888776 77788888888
Q ss_pred HHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhc-C---------------------------------------
Q 036356 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC-R--------------------------------------- 129 (462)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~-~--------------------------------------- 129 (462)
..++.+.+++++|..++..-...-. .+.-|.+. +
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~------~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETN------PFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhc------chhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHH
Confidence 8999999999999988872210000 00111111 0
Q ss_pred -----CCCCeeeHHHH---HHHHHhCC------------------ChhHHHHHHHHh----h-------hhhhhhcCCCC
Q 036356 130 -----YQPNVTLRNAM---ISGYAKNG------------------YAEEAVKLFPKW----M-------DYYIGKSEYRN 172 (462)
Q Consensus 130 -----~~p~~~~~~~l---i~~~~~~g------------------~~~~a~~~~~~m----~-------~~~~~~~~~~~ 172 (462)
...|...|.++ +.+..-.. +.+.-..+|+-- . .....-.+..-
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE 242 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence 11222222111 11110000 000000111100 0 11112345667
Q ss_pred CchHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHHHHHHHHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhh
Q 036356 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMIVGYGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCS 244 (462)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~ 244 (462)
++.......+-+...+++.+..++++...+. +...+..-|.++...| .+-+.+=.++.+ |+ ..+|-++.--|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 7777788888888889999999998887754 3444555566666666 555555556666 44 56777777777
Q ss_pred cCccchhhhHHHHHHHHHhCCC--cchHHHHHHHHh---h-----------c-CCCCHhHHHHHHHHHHcCCChhHHHHH
Q 036356 245 CDLEFLEQGKIVHGFMIKLGLE--LESDLLISLTAV---C-----------R-YQPNVTLWNAMISGYAKNGYAEEAVKL 307 (462)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~---~-----------~-~~~~~~~~~~li~~~~~~~~~~~a~~~ 307 (462)
...|...+|++.|.......-. |--.-|.-.... + . .+.....+--+---|.+.++.+.|.+.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 7778888888888876543321 100000000000 0 0 011111111122234555666666666
Q ss_pred hhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC------C----CccchHHHHHHHHhcCChHHHH
Q 036356 308 FPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD------K----DVVMRSAMTVGYGLHGLGEEGW 376 (462)
Q Consensus 308 ~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~~~~~~a~ 376 (462)
|.. ..++.| |+...+-+.-..-..+.+.+|..+|+...+ + -..+++.|..+|.+.+.+++|+
T Consensus 403 f~~-------A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 403 FKQ-------ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHH-------HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 654 445666 455666666666667788888888886652 1 2335778888899999999999
Q ss_pred HHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHcc
Q 036356 377 VLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIP 436 (462)
Q Consensus 377 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~ 436 (462)
..++.... ..| +..+|.++.-.|...|+++.|.+.|.+. .+.|+..+-..+++.+...
T Consensus 476 ~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999887 555 4788888888899999999999999887 7888888877777765544
No 69
>PF12854 PPR_1: PPR repeat
Probab=98.82 E-value=3.4e-09 Score=60.34 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=23.7
Q ss_pred CCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201 (462)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (462)
|+.||..|||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777663
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=7.5e-06 Score=71.56 Aligned_cols=92 Identities=11% Similarity=-0.011 Sum_probs=62.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCC
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY-ARVVDLLARAGYSNHAFKFIMNMPIELR-LSVRRALLSAWKIPMQ 438 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~l~~~~~~~~~ 438 (462)
.+..+++..|++.+|+++|-......++ |..+| ..|...|.+.+.++-|..++-++....+ ......+..-|.+.+.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888776653333 34445 4556678888999999888888843333 3345566778888888
Q ss_pred hHHHHHHHHhhhhcC
Q 036356 439 QWENMLQTIRGIDEG 453 (462)
Q Consensus 439 ~~~a~~~~~~~~~~~ 453 (462)
+.-|...+.+.....
T Consensus 477 FyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 477 FYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHhhhHHHccC
Confidence 888877765544333
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1e-05 Score=73.73 Aligned_cols=330 Identities=12% Similarity=-0.055 Sum_probs=185.4
Q ss_pred HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164 (462)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (462)
+-...+-|-+.|.+++|++.|.+.+.. .|| +..|.....+|...|+|+++.+.-.+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l------------------~p~epiFYsNraAcY~~lgd~~~Vied~Tk----- 174 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL------------------CPDEPIFYSNRAACYESLGDWEKVIEDCTK----- 174 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc------------------CCCCchhhhhHHHHHHHHhhHHHHHHHHHH-----
Confidence 445566778899999999999999987 467 78888899999999999998877655
Q ss_pred hhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhh------ccCCCCcchHHHHHHHHHhCc-hHHHHHHHhhhc---CC
Q 036356 165 IGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFD------RTLDKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS---NE 233 (462)
Q Consensus 165 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~------~m~~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~---~~ 233 (462)
...+.|+ +..+.--.+++-..|++++|+.=+. ... |..+--.+=+.+-+.+ ..+.+.+.+-.. |+
T Consensus 175 --ALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~--n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS 250 (606)
T KOG0547|consen 175 --ALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ--NASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS 250 (606)
T ss_pred --HhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc--cchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc
Confidence 3445665 4566667778888888888754221 111 1100000011111222 333333332111 55
Q ss_pred cchHHHHHHhhcC--------ccc-----hhhhHHHHHHHHHhCCCcchHHHH-----HHHHhhcCCCCHh------HHH
Q 036356 234 ENEYGTALDCSCD--------LEF-----LEQGKIVHGFMIKLGLELESDLLI-----SLTAVCRYQPNVT------LWN 289 (462)
Q Consensus 234 ~~~~~~ll~~~~~--------~~~-----~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~------~~~ 289 (462)
.....+....+.. .++ ..++.+-+..-...|...-....+ .....|.-..|.. +..
T Consensus 251 ~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 251 ATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred HHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 4444444433321 011 111111111111111110000000 0000000001111 111
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHH
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGY 366 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 366 (462)
.--.-+.-.|+.-.|..-|+..+ .....++ ..|--+..+|....+.++.++.|.+..+ .|..+|..=...+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I-----~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAI-----KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHH-----hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 11112334566667777776632 2222222 2255566677777788888888877653 3566676666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHH
Q 036356 367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWENM 443 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~ 443 (462)
.-.+++++|..=|++.++ +.|. ...|-.+.-+..+.+++++++..|++. .++-.+..|+.....+..+++++.|+
T Consensus 405 flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence 677778888888888777 6675 566777777777788888888888877 45445677888888888888888887
Q ss_pred HHHHhhh
Q 036356 444 LQTIRGI 450 (462)
Q Consensus 444 ~~~~~~~ 450 (462)
+.+...+
T Consensus 483 k~YD~ai 489 (606)
T KOG0547|consen 483 KQYDKAI 489 (606)
T ss_pred HHHHHHH
Confidence 7665543
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.7e-05 Score=72.72 Aligned_cols=389 Identities=10% Similarity=0.012 Sum_probs=209.7
Q ss_pred HHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhhc--CCCcchHHHHHHhh
Q 036356 17 LKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGLL--SNEENEYGTALDCS 93 (462)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m~--~~~~~~~~~ll~~~ 93 (462)
++-+...+++++|.+....++..+... ++.+.+..+ +.+.+++++|+.+.+.-. ..+..-+.--..+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd---------~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDD---------EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCE 89 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCc---------HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHH
Confidence 344456667888888888887766331 344444555 888889999987766541 11111111223344
Q ss_pred cCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe-eeHHHHHHHHHhCCChhHHHHHHHHhh-----------
Q 036356 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLRNAMISGYAKNGYAEEAVKLFPKWM----------- 161 (462)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~----------- 161 (462)
-+.+..++|...++ |. .++. .+...=...+-+.|++++|+.+|+.+.
T Consensus 90 Yrlnk~Dealk~~~-----~~----------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GL----------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred HHcccHHHHHHHHh-----cc----------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 47788888888877 33 2333 345555566888999999999999883
Q ss_pred ------------hhhhhhcCCCCCchHHHHHH---HHHHhcCCcccHHHHhhcc--------CCCCc-----chHH----
Q 036356 162 ------------DYYIGKSEYRNNVIVNTVLI---DMYAKCGSVDLAPMFFDRT--------LDKDV-----VMRS---- 209 (462)
Q Consensus 162 ------------~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m--------~~~~~-----~~~~---- 209 (462)
..........| ..+|..+. ..+...|++.+|+++++.. .+.|. ..--
T Consensus 149 r~nl~a~~a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 149 RANLLAVAAALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred HHHHHHHHHhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 00112222233 22444333 3456678888888888765 11111 1111
Q ss_pred -HHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHH---hhcCccchhh--hHHHHHHHHHh-----------CCCc
Q 036356 210 -AMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALD---CSCDLEFLEQ--GKIVHGFMIKL-----------GLEL 267 (462)
Q Consensus 210 -~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~---~~~~~~~~~~--a~~~~~~~~~~-----------~~~~ 267 (462)
.+.-.+-..| ++|..++....+ +|........+ +...-.++-+ ++..++..... .-.-
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1112334445 788888877777 44433222222 2222222222 11111111100 0000
Q ss_pred chHHHHHHHHhhc---------------CCCCHhHHHHHHHHHH--cCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356 268 ESDLLISLTAVCR---------------YQPNVTLWNAMISGYA--KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330 (462)
Q Consensus 268 ~~~~~~~l~~~~~---------------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (462)
....=+.++.++- ..|. ..+.+++.... +...+.+|..++.. ..+....-...+--.
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~-----~~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQ-----FADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHH-----HhccCCchhHHHHHH
Confidence 0000011111100 1222 22333333322 22245666666655 222222222445555
Q ss_pred HHHHHHhcCCcchHHHHhc--------cCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC----HhHH
Q 036356 331 LIDMYAKCGSVDLAPMFFD--------RTLD--KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH--GIEPR----HQHY 394 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~~~ 394 (462)
.+......|+++.|.+++. .+.+ ....+-..+...+.+.++.+.|..++.+.... .-.+. ..++
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 6677788999999999888 3332 23345566777778888877777777766553 12222 2333
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHccCChHHHH
Q 036356 395 ARVVDLLARAGYSNHAFKFIMNM-P-IELRLSVRRALLSAWKIPMQQWENM 443 (462)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~~~~~~a~ 443 (462)
..+...=.+.|+-++|..+++++ . ..+|..+...++.+|++. +.+.|.
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence 44444445779999999999998 3 456888899999999987 455665
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.5e-06 Score=75.79 Aligned_cols=382 Identities=11% Similarity=-0.013 Sum_probs=212.0
Q ss_pred HHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhh---cCCCcchHHHHHHh
Q 036356 17 LKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGL---LSNEENEYGTALDC 92 (462)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~ 92 (462)
|.-+...+++..|..+++.-...+-+. +.++-.|-.- +...|++++|+..+..+ ..++...+-.|.-+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EE--------E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREE--------EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACC 100 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhh--------hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHH
Confidence 444555677777877777666544332 2344556666 78889999999999988 55666666666655
Q ss_pred hcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcC-----------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-----------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~-----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
.--.|.+.+|.++-....+..+ ....+++.--|.+ ..-+..---+|.+..--.-.+++|+++|....
T Consensus 101 ~FyLg~Y~eA~~~~~ka~k~pL--~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKAPKTPL--CIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHHHHHHhhCCCChH--HHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777776655443322 2222333333333 01111112233333333446777888877752
Q ss_pred hhhhhhcCCCCCchHHHH-HHHHHHhcCCcccHHHHhhccCC--CCc-------------------------------c-
Q 036356 162 DYYIGKSEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDRTLD--KDV-------------------------------V- 206 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~--~~~-------------------------------~- 206 (462)
.. .|+-...|. +.-+|.+..-++-+.++++--.+ ||. .
T Consensus 179 -----~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 179 -----QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred -----hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 11 112111121 22344555555544444432210 111 0
Q ss_pred hHHHHHHHHHhCc-------hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh-
Q 036356 207 MRSAMIVGYGLHE-------WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV- 278 (462)
Q Consensus 207 ~~~~li~~~~~~~-------~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 278 (462)
.|. .+.-+++++ +.|++++-.+.+.=...-..++--|.+.+++.+|..+..++. -..|-......++.+
T Consensus 252 ~~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 252 EYP-FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAA 328 (557)
T ss_pred cch-hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHH
Confidence 011 122222222 666666666555111222344555678888888877665542 123333344444433
Q ss_pred hc------------------------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH
Q 036356 279 CR------------------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334 (462)
Q Consensus 279 ~~------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 334 (462)
.| ...++.--.++.+.+.-..++++++-++.. ++.-=...|...|| +.++
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS-----i~sYF~NdD~Fn~N-~AQA 402 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS-----IESYFTNDDDFNLN-LAQA 402 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCcchhhhH-HHHH
Confidence 22 111122233444455555566666666655 22222223344444 6788
Q ss_pred HHhcCCcchHHHHhccCCCC---CccchHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHhcCChHH
Q 036356 335 YAKCGSVDLAPMFFDRTLDK---DVVMRSA-MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH-YARVVDLLARAGYSNH 409 (462)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~ 409 (462)
++..|.+.+|+++|-.+..| |..+|.+ |.++|.+.++++.|++++-++.. +.+..+ ...+.+-|.+.+++--
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888754 5667754 56888999999999887765543 333333 4455568999999988
Q ss_pred HHHHHHhC-CCCCCHHHHH
Q 036356 410 AFKFIMNM-PIELRLSVRR 427 (462)
Q Consensus 410 A~~~~~~m-~~~p~~~~~~ 427 (462)
|-+.|+.+ ...|++.-|.
T Consensus 480 aaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 480 AAKAFDELEILDPTPENWE 498 (557)
T ss_pred HHHhhhHHHccCCCccccC
Confidence 88888888 5678877664
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.69 E-value=1.9e-05 Score=74.48 Aligned_cols=292 Identities=11% Similarity=-0.006 Sum_probs=151.3
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcC-CCCCchHHHHHH------HHHHhcCCcccHHHHhhccCCC-
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLI------DMYAKCGSVDLAPMFFDRTLDK- 203 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~- 203 (462)
-....|..+..++.-.|+...|..+.++. .... -.|+...|.-.. ....+.|.+++|.+.+......
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef-----~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i 215 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEF-----EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI 215 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH
Confidence 34566888888888889999999998886 3332 345555443322 2345667777777777665432
Q ss_pred -CcchHH-HHHHHHHhCc--hHHHHHHHhhhc--CCcchHHHHHHhhc-CccchhhhH-HHHHHHHHhCCCcchHHHHHH
Q 036356 204 -DVVMRS-AMIVGYGLHE--WSAFGSFDGLLS--NEENEYGTALDCSC-DLEFLEQGK-IVHGFMIKLGLELESDLLISL 275 (462)
Q Consensus 204 -~~~~~~-~li~~~~~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l 275 (462)
|...+- +-...+.+.+ ++|..++..+.. ||..-|...+..+. +..+.-++. .+|....+.-
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y----------- 284 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY----------- 284 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-----------
Confidence 222221 1123344444 888888888877 77777766655444 222222222 4444443321
Q ss_pred HHhhcCCCCHhHHHHHHHHHHcCCChhHH-HHHhhHHHHHHHHhhCCCCchhHHH-------------HHHHHHHhcCCc
Q 036356 276 TAVCRYQPNVTLWNAMISGYAKNGYAEEA-VKLFPKWMDYYIGKSEYRNNVIVNT-------------VLIDMYAKCGSV 341 (462)
Q Consensus 276 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~ 341 (462)
|-...-..+--.........+. -.++.. +...|+.+--.... .++..|...-..
T Consensus 285 -------~r~e~p~Rlplsvl~~eel~~~vdkyL~~-----~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 285 -------PRHECPRRLPLSVLNGEELKEIVDKYLRP-----LLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred -------cccccchhccHHHhCcchhHHHHHHHHHH-----HhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 1110000000001111111111 111222 23344433111111 111222211111
Q ss_pred chHHHHhccC--CCCCccch--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 342 DLAPMFFDRT--LDKDVVMR--SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 342 ~~A~~~~~~~--~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
+......+.- ..|....| -.++..|-+.|+++.|...++.... .+|+ ...|..-...+...|++++|..++++
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 1111111111 12333333 3567778888888888888888886 7777 55677777788888888888888888
Q ss_pred C-CC-CCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356 417 M-PI-ELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 417 m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
. .+ .||...-.--.+-..+.+..++|...+-.--+.|
T Consensus 431 a~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 431 AQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 7 22 3454444445555566677777766655544444
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.69 E-value=4.4e-06 Score=68.82 Aligned_cols=190 Identities=12% Similarity=-0.063 Sum_probs=157.6
Q ss_pred HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316 (462)
Q Consensus 237 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 316 (462)
...+.-.|.+.|+...|..-++..+++. +.+..+|..+...|-+.|+.+.|.+-|++.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-----------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---- 96 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-----------------PSYYLAHLVRAHYYQKLGENDLADESYRKAL---- 96 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------cccHHHHHHHHHHHHHcCChhhHHHHHHHHH----
Confidence 4456677889999999999999999975 2467889999999999999999999999843
Q ss_pred HhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC-CC----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356 317 GKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DK----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390 (462)
Q Consensus 317 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 390 (462)
...| +..+.|....-+|..|++++|...|+... .| -..+|..+..+..+.|+.+.|.+.|++..+ ..|+
T Consensus 97 ---sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~ 171 (250)
T COG3063 97 ---SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQ 171 (250)
T ss_pred ---hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcC
Confidence 3445 35677777888999999999999999876 44 345888999999999999999999999998 7777
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356 391 -HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 391 -~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
..+...+.....+.|++-.|...++.. +..++..+....++.-.+.|+...+- .+...+...
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~-~Y~~qL~r~ 236 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ-RYQAQLQRL 236 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH-HHHHHHHHh
Confidence 678889999999999999999999998 45588888888888888999975554 444444443
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.67 E-value=0.00014 Score=68.90 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc---hhHHHHHHHHHHhcCCcchHHHHhccCCC-C--------
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN---VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-K-------- 354 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-------- 354 (462)
.|..+.+.|-..|+++.|..+|++. .+..++-- ..+|..-..+=.+..+++.|.++.+...- |
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka-----~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKA-----TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHh-----hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 4666666677777777777777662 22222111 22333333333345556666666654431 1
Q ss_pred ------------CccchHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036356 355 ------------DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-EPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PI 419 (462)
Q Consensus 355 ------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 419 (462)
+...|+.+++.--..|-++....+++++.+..+ +|. ...|..++ -...-++++.+++++- .+
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL---Eeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL---EEHKYFEESFKAYERGISL 540 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhhHHHHHHHHHHHcCCcc
Confidence 223455555555556666667777777766532 232 22333332 3445577788888775 21
Q ss_pred --CCC-HHHHHHHHHHHHcc---CChHHHHHHHHhhhhcCCCCC
Q 036356 420 --ELR-LSVRRALLSAWKIP---MQQWENMLQTIRGIDEGEKTD 457 (462)
Q Consensus 420 --~p~-~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~pd 457 (462)
-|+ ...|++.+..+.+. .+.+.|..++++.++ |+.|.
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 133 33677666555433 455667766666555 76664
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.65 E-value=3.2e-06 Score=76.38 Aligned_cols=226 Identities=10% Similarity=-0.003 Sum_probs=135.6
Q ss_pred CCChhHHHHHHHHhhhhhhhhcCCCCC--chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHH
Q 036356 147 NGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFG 224 (462)
Q Consensus 147 ~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~ 224 (462)
.+..+.++.-+.++ +......|+ ...|..+...|.+.|+.++|...|++..+.++
T Consensus 39 ~~~~e~~i~~~~~~----l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P------------------- 95 (296)
T PRK11189 39 TLQQEVILARLNQI----LASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP------------------- 95 (296)
T ss_pred chHHHHHHHHHHHH----HccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------------------
Confidence 34566666666665 122222222 34566666777777888887777766553222
Q ss_pred HHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHH
Q 036356 225 SFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEA 304 (462)
Q Consensus 225 ~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a 304 (462)
.+...|+.+...+...|++++|...|+...+.. +-+...|..+..++...|++++|
T Consensus 96 -------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----------------P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 96 -------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-----------------PTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred -------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 223456667777788888888888888887753 12456777777788888888888
Q ss_pred HHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356 305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383 (462)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 383 (462)
.+.|++.+ . ..|+..........+...++.++|...|++... .+...|.. .......|+...+ +.+..+.
T Consensus 152 ~~~~~~al-----~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 152 QDDLLAFY-----Q--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred HHHHHHHH-----H--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHHHHH
Confidence 88888743 2 234332222222233456778888888865432 22233332 2233335555444 3445544
Q ss_pred HC-C----CCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHH
Q 036356 384 KH-G----IEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIE-LRLSVRRA 428 (462)
Q Consensus 384 ~~-g----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ 428 (462)
+. . +.|+ ...|..+...+.+.|++++|...|++. ... ||..-+..
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 32 1 1222 357888888888999999999999887 333 46555544
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=6e-07 Score=77.37 Aligned_cols=220 Identities=14% Similarity=0.022 Sum_probs=175.2
Q ss_pred HHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc--CCcchHHH-HHHhhcCccch
Q 036356 178 TVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--NEENEYGT-ALDCSCDLEFL 250 (462)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~~~~~~~~-ll~~~~~~~~~ 250 (462)
+-+-++|.+.|-+.+|++.|+.-. .|-+.||-.+-+.|.+-+ +.|+.+|.+-.. |-.+||.. +.+.+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 668889999999999999998654 467778888888998888 899999998887 77666654 55667778899
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (462)
++|.++|+...+.. ..++....++...|.-.+++|-|+.++++ +...|+. +...|+.
T Consensus 307 ~~a~~lYk~vlk~~-----------------~~nvEaiAcia~~yfY~~~PE~AlryYRR-----iLqmG~~-speLf~N 363 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-----------------PINVEAIACIAVGYFYDNNPEMALRYYRR-----ILQMGAQ-SPELFCN 363 (478)
T ss_pred HHHHHHHHHHHhcC-----------------CccceeeeeeeeccccCCChHHHHHHHHH-----HHHhcCC-ChHHHhh
Confidence 99999999988864 25777777888888889999999999999 5566763 5667777
Q ss_pred HHHHHHhcCCcchHHHHhccCC----CCC--ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTL----DKD--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR 403 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 403 (462)
+.-+|.-.++++-+..-|++.. +|+ ...|-.|-......||+..|.+.|+-... ..|+ ...++-|.-.-.+
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAAR 441 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhh
Confidence 7778888888988887777654 343 34677777788888999999999998887 4455 6788888888889
Q ss_pred cCChHHHHHHHHhC-CCCCC
Q 036356 404 AGYSNHAFKFIMNM-PIELR 422 (462)
Q Consensus 404 ~g~~~~A~~~~~~m-~~~p~ 422 (462)
.|++++|..++... ...|+
T Consensus 442 ~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 442 SGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cCchHHHHHHHHHhhhhCcc
Confidence 99999999999887 44454
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.59 E-value=2.7e-06 Score=81.03 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=115.8
Q ss_pred hHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356 220 WSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297 (462)
Q Consensus 220 ~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 297 (462)
.+|+.+++.+.. ....-|..+...|+..|+++.|+++|-+. ..++--|..|.+
T Consensus 749 ~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-------------------------~~~~dai~my~k 803 (1636)
T KOG3616|consen 749 KKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-------------------------DLFKDAIDMYGK 803 (1636)
T ss_pred hhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-------------------------chhHHHHHHHhc
Confidence 445555554444 23334666667777777777777766432 124455667777
Q ss_pred CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHH
Q 036356 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377 (462)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 377 (462)
.|+++.|.++-.+ -.|....+..|-+-..-+-+.|++.+|.+++-.+..|+. -|..|-+.|..+..++
T Consensus 804 ~~kw~da~kla~e-------~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEE-------CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIR 871 (1636)
T ss_pred cccHHHHHHHHHH-------hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHH
Confidence 7777777777644 345555666676666667777888888888777776654 3677778888777777
Q ss_pred HHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 036356 378 LFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENML 444 (462)
Q Consensus 378 ~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~ 444 (462)
+.++-. |+ ..|...+..-|-..|++..|..-|-+.+ -|.+-+..|..++.+++|..
T Consensus 872 lv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 872 LVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred HHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHH
Confidence 665533 44 4566677777888888888888777763 25555666666666666653
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=6.2e-05 Score=72.58 Aligned_cols=330 Identities=11% Similarity=0.050 Sum_probs=193.5
Q ss_pred cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158 (462)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (462)
+..|...|..+--++.+.|+++.+-+.|++....-+ -....|..+-..|.-.|.-..|+.+++
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-----------------~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-----------------GEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----------------hhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 556777788888888888888888888888876554 456678888888888888888888887
Q ss_pred HhhhhhhhhcCCCCCchHHHHHHHHHHh-cCCcccHHHHhhccCC--------CCcchHHHHHHHHHhCc----------
Q 036356 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLAPMFFDRTLD--------KDVVMRSAMIVGYGLHE---------- 219 (462)
Q Consensus 159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~---------- 219 (462)
+-. ....-++|+..+-..-..|.+ .+.+++++.+-.+... .....|-.+.-+|...-
T Consensus 382 ~~~----~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~ 457 (799)
T KOG4162|consen 382 ESL----KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD 457 (799)
T ss_pred hhc----ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH
Confidence 741 111112234444333333333 3555555444433221 12333433333333221
Q ss_pred ---hHHHHHHHhhhc-----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH
Q 036356 220 ---WSAFGSFDGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291 (462)
Q Consensus 220 ---~~a~~~~~~m~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 291 (462)
.++++.+++..+ |+...|..+ -|+-.++++.|.+...+..+.+-..+... |.-+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~----------------whLL 519 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKA----------------WHLL 519 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHH----------------HHHH
Confidence 556666666655 333333222 34456677777777777777654433333 3333
Q ss_pred HHHHHcCCChhHHHHHhhHHHHHH--------------------------------------------------------
Q 036356 292 ISGYAKNGYAEEAVKLFPKWMDYY-------------------------------------------------------- 315 (462)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~~~~~~-------------------------------------------------------- 315 (462)
.-.+.-.+++.+|+.+.+..+++.
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence 333333333333333321111100
Q ss_pred ------------------------H---------HhhCCCCc--------hhHHHHHHHHHHhcCCcchHHHHhccCCCC
Q 036356 316 ------------------------I---------GKSEYRNN--------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK 354 (462)
Q Consensus 316 ------------------------~---------~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 354 (462)
. ......|. ...|......+.+.+..++|...+.+...-
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0 00001111 112233344455555556665555444322
Q ss_pred ---CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHH
Q 036356 355 ---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFK--FIMNM-PIEL-RLSVR 426 (462)
Q Consensus 355 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~ 426 (462)
....|......+...|..++|.+.|..... +.|+ ..+..++...+.+.|+..-|.. ++.++ .+.| +...|
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 223344445566677888999999888887 8898 6788899999999999888888 88887 6666 67799
Q ss_pred HHHHHHHHccCChHHHHHHHHhh
Q 036356 427 RALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 427 ~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
..+...+...|+.++|.+-+.-.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 99999999999999999877654
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.57 E-value=1.4e-05 Score=72.24 Aligned_cols=214 Identities=12% Similarity=-0.088 Sum_probs=137.9
Q ss_pred cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC--eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc
Q 036356 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174 (462)
Q Consensus 97 ~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 174 (462)
+..+.+..-+.++..... ..|+ ...|..+...+...|+.++|...|++. .+. -+.+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~---------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~A-----l~l-~P~~~ 98 (296)
T PRK11189 40 LQQEVILARLNQILASRD---------------LTDEERAQLHYERGVLYDSLGLRALARNDFSQA-----LAL-RPDMA 98 (296)
T ss_pred hHHHHHHHHHHHHHcccc---------------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHc-CCCCH
Confidence 455666677777765432 0222 345777888899999999999999885 222 23357
Q ss_pred hHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhH
Q 036356 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK 254 (462)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~ 254 (462)
..|+.+...+...|++++|...|++..+.++. +..++..+..++...|++++|.
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--------------------------~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--------------------------YNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHCCCHHHHH
Confidence 88999999999999999999999887643321 1234455556666778888888
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH
Q 036356 255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334 (462)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 334 (462)
+.++...+.. |+..........+...++.++|...|.+.. . ...|+...+ . ..
T Consensus 153 ~~~~~al~~~------------------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~-----~-~~~~~~~~~-~--~~ 205 (296)
T PRK11189 153 DDLLAFYQDD------------------PNDPYRALWLYLAESKLDPKQAKENLKQRY-----E-KLDKEQWGW-N--IV 205 (296)
T ss_pred HHHHHHHHhC------------------CCCHHHHHHHHHHHccCCHHHHHHHHHHHH-----h-hCCccccHH-H--HH
Confidence 8888887754 332211122222345678889988886632 1 122332222 1 22
Q ss_pred HHhcCCcchHHHHhccCC---C-------CCccchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356 335 YAKCGSVDLAPMFFDRTL---D-------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~---~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (462)
....|+.+.+ ..++.+. + .....|..+...+.+.|++++|...|++..+.
T Consensus 206 ~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 206 EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3335565544 2332222 1 13357888999999999999999999999983
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.55 E-value=9.7e-06 Score=66.84 Aligned_cols=203 Identities=14% Similarity=0.040 Sum_probs=152.0
Q ss_pred HHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHH
Q 036356 178 TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVH 257 (462)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 257 (462)
.-|.-.|...||...|..-+++..+.|+.. ..++..+...|.+.|..+.|.+-|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~--------------------------~~a~~~~A~~Yq~~Ge~~~A~e~Y 92 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSY--------------------------YLAHLVRAHYYQKLGENDLADESY 92 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccc--------------------------HHHHHHHHHHHHHcCChhhHHHHH
Confidence 345555666666666666666665544432 334666777778888899999999
Q ss_pred HHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh
Q 036356 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337 (462)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 337 (462)
+...+.. +-+....|..-.-+|..|++++|...|.+.+ ......-...+|..+.-+..+
T Consensus 93 rkAlsl~-----------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al----~~P~Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 93 RKALSLA-----------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERAL----ADPAYGEPSDTLENLGLCALK 151 (250)
T ss_pred HHHHhcC-----------------CCccchhhhhhHHHHhCCChHHHHHHHHHHH----hCCCCCCcchhhhhhHHHHhh
Confidence 8888764 2466778888888999999999999999853 233333345678888888889
Q ss_pred cCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 036356 338 CGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414 (462)
Q Consensus 338 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 414 (462)
.|+.+.|...|++..+ | ...+.-.+.....+.|++-.|..+++.....+. ++..+....|..-.+.|+-+.|.+.=
T Consensus 152 ~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 152 AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998774 3 344666788888899999999999999888765 99999999999989999999888776
Q ss_pred HhC-CCCCCHHHHHH
Q 036356 415 MNM-PIELRLSVRRA 428 (462)
Q Consensus 415 ~~m-~~~p~~~~~~~ 428 (462)
..+ ..-|...-+..
T Consensus 231 ~qL~r~fP~s~e~q~ 245 (250)
T COG3063 231 AQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHhCCCcHHHHh
Confidence 665 33455554443
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=0.00011 Score=68.83 Aligned_cols=298 Identities=10% Similarity=-0.076 Sum_probs=142.2
Q ss_pred hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeee-HHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL-RNAMISGYAKNGYAEEAVKLFPKWMDY 163 (462)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (462)
.|..+...+...|+.+.+.+.+....+... ..++... .......+...|++++|.+++++.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~--- 69 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALA---------------ARATERERAHVEALSAWIAGDLPKALALLEQL--- 69 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhc---------------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 455555556666777776666666655433 0122111 111223456678888888888875
Q ss_pred hhhhcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHH
Q 036356 164 YIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGT 239 (462)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ 239 (462)
... .+.|...+.. ...+.. .+..+.+.+.++.....+... ......
T Consensus 70 --l~~-~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------------~~~~~~ 119 (355)
T cd05804 70 --LDD-YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--------------------------WYLLGM 119 (355)
T ss_pred --HHH-CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--------------------------HHHHHH
Confidence 222 2223333332 212222 344444444444321111111 111223
Q ss_pred HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh
Q 036356 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319 (462)
Q Consensus 240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 319 (462)
+...+...|++++|...++...+... .+...+..+...+...|++++|...+.+.+. ..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~----~~ 178 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNP-----------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRD----TW 178 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-----------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh----cc
Confidence 33445566777777777777766531 3445566666667777777777777766321 00
Q ss_pred CCCCc--hhHHHHHHHHHHhcCCcchHHHHhccCCCCCc--cchH------HHHHHHHhcCChHHHHHH--HHHHHHCCC
Q 036356 320 EYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV--VMRS------AMTVGYGLHGLGEEGWVL--FHHIRKHGI 387 (462)
Q Consensus 320 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~~~~~~a~~~--~~~m~~~g~ 387 (462)
...|+ ...|..+...+...|+.++|..++++...++. .... .++.-+...|..+.+.++ +........
T Consensus 179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~ 258 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF 258 (355)
T ss_pred CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc
Confidence 01122 22344566667777777777777776542211 1111 222223333433322222 111111000
Q ss_pred --CCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCC---------CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 388 --EPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIEL---------RLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 388 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
............++...|+.++|.++++.+ .... .....-....++...|+..+|+..+.+.+.
T Consensus 259 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 259 PDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001111124555666777777777777666 1111 111222333444566777777766665543
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=2.7e-05 Score=73.48 Aligned_cols=359 Identities=13% Similarity=0.065 Sum_probs=215.9
Q ss_pred hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCC-Ccch--------
Q 036356 20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSN-EENE-------- 85 (462)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~-~~~~-------- 85 (462)
+...|+.++|....+.-.+..+ .+.+.|+.+ +....++++|++.|... ..| |...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~-----------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL-----------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc-----------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3455677777777776666554 467777777 55566777777777766 222 2333
Q ss_pred --------------------------HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356 86 --------------------------YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA 139 (462)
Q Consensus 86 --------------------------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~ 139 (462)
|..+..+.--.|+...|..+.++..+... ..|+...|.-
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~---------------~~~s~~~~e~ 184 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN---------------TSPSKEDYEH 184 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------cCCCHHHHHH
Confidence 33333333334444444444444443321 1355555543
Q ss_pred HH------HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHH-
Q 036356 140 MI------SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSA- 210 (462)
Q Consensus 140 li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~- 210 (462)
.. ....++|..+.|++.+..- +..+.-....--+-.+.+.+.+++++|..++..+.. ||-.-|+.
T Consensus 185 se~~Ly~n~i~~E~g~~q~ale~L~~~------e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~ 258 (700)
T KOG1156|consen 185 SELLLYQNQILIEAGSLQKALEHLLDN------EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHhh------hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence 32 3456789999999988873 344433344445566778999999999999998875 44444444
Q ss_pred HHHHHH--hCchHHH-HHHHhhhc--CCcch-HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchH-------------H
Q 036356 211 MIVGYG--LHEWSAF-GSFDGLLS--NEENE-YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD-------------L 271 (462)
Q Consensus 211 li~~~~--~~~~~a~-~~~~~m~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~ 271 (462)
+..++. ..+-+++ .+|....+ |.... -..=++........+....++..+.+.|+++--. +
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHH
Confidence 344443 2223333 56665555 11110 0011111112333344445666666666654111 1
Q ss_pred HHHHHHh-------hc----------CCCCHhHHH--HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHH
Q 036356 272 LISLTAV-------CR----------YQPNVTLWN--AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVL 331 (462)
Q Consensus 272 ~~~l~~~-------~~----------~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l 331 (462)
...++.. +| -+|....|. .++..|-+.|+++.|+.+++..+ +..|+ +..|..=
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI-------dHTPTliEly~~K 411 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI-------DHTPTLIELYLVK 411 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-------ccCchHHHHHHHH
Confidence 1112222 11 256665555 46778999999999999998843 45666 3455555
Q ss_pred HHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--C----HhHHHHH--HHH
Q 036356 332 IDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP--R----HQHYARV--VDL 400 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~----~~~~~~l--i~~ 400 (462)
.+.+...|+++.|..++++..+ +|...-+.-..-..++++.++|.++.....+.|... + ...|-.+ ..+
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~a 491 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEA 491 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHH
Confidence 6889999999999999998774 565555566667778999999999999999887511 1 1223333 346
Q ss_pred HHhcCChHHHHHHHHhC
Q 036356 401 LARAGYSNHAFKFIMNM 417 (462)
Q Consensus 401 ~~~~g~~~~A~~~~~~m 417 (462)
|.+.|++-.|++=|..+
T Consensus 492 y~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 492 YLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 78888888887766555
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.8e-05 Score=68.09 Aligned_cols=298 Identities=11% Similarity=0.009 Sum_probs=192.0
Q ss_pred cCCCcchHHHHHHhhcC--ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 036356 79 LSNEENEYGTALDCSCD--LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKL 156 (462)
Q Consensus 79 ~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 156 (462)
.+|+..+...-+.++++ .++-..+.+.+-.+..... .+-|+.....+...+...|+.++|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~---------------lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT---------------LRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc---------------CCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 44444455555555543 3344444444444443332 034666677888888888999999888
Q ss_pred HHHhhhhhhhhcCCCCCch-HHHHHHHHHHhcCCcccHHHHhhccCCCC---cchHHHHHHH-HHhCc-hHHHHHHHhhh
Q 036356 157 FPKWMDYYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VVMRSAMIVG-YGLHE-WSAFGSFDGLL 230 (462)
Q Consensus 157 ~~~m~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~-~~~~~-~~a~~~~~~m~ 230 (462)
|++. ..+.|+.. ....-.-.+.+.|+.+....+...+-..+ ...|-.-... |-+.. +.|+.+-++-.
T Consensus 255 Fe~~-------~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 255 FSST-------LCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred HHHH-------hhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 8884 22334322 22222233456677777766666554332 2223222222 22333 77888877777
Q ss_pred cCC---cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHH
Q 036356 231 SNE---ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307 (462)
Q Consensus 231 ~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 307 (462)
+.+ ...|-.--..+...++.++|.--|....... +-+..+|.-++..|...|++.+|.-+
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-----------------p~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-----------------PYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-----------------hhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 732 3333333456778899999999998887653 24788999999999999999999887
Q ss_pred hhHHHHHHHHhhCCCCchhHHHHHH-HHHHh-cCCcchHHHHhccCCC--CCc-cchHHHHHHHHhcCChHHHHHHHHHH
Q 036356 308 FPKWMDYYIGKSEYRNNVIVNTVLI-DMYAK-CGSVDLAPMFFDRTLD--KDV-VMRSAMTVGYGLHGLGEEGWVLFHHI 382 (462)
Q Consensus 308 ~~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m 382 (462)
-...+ .. ...+..+...+. .++.- ..--++|.+++++-.. |+- ..-+.+...+...|..+.++.++++-
T Consensus 391 An~~~----~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 391 ANWTI----RL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHH----HH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 76642 11 222334443331 22222 2224788999988763 442 24566778888999999999999998
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036356 383 RKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 383 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 423 (462)
.. ..||....+.|.+.+...+.+.+|++.|... .+.|+.
T Consensus 465 L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 465 LI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88 8899999999999999999999999998887 666644
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=2.1e-05 Score=75.19 Aligned_cols=220 Identities=15% Similarity=0.072 Sum_probs=163.1
Q ss_pred HHHHHHhcCCcccHHHHhhccCCCCcch--HHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHH
Q 036356 180 LIDMYAKCGSVDLAPMFFDRTLDKDVVM--RSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255 (462)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~ 255 (462)
.+.+.....+|.+|+.+++.+++.++.+ |..+...|+..| +.|.++|-+. ..++-.|..|.+.|+|+.|.+
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHH
Confidence 4556667789999999999888655443 566667888888 8899988765 456777889999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHH
Q 036356 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335 (462)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 335 (462)
+-.+... . ......|-+-..-+-+.|++.+|++++-. + | .|+ ..|.+|
T Consensus 813 la~e~~~--~----------------e~t~~~yiakaedldehgkf~eaeqlyit-----i---~-~p~-----~aiqmy 860 (1636)
T KOG3616|consen 813 LAEECHG--P----------------EATISLYIAKAEDLDEHGKFAEAEQLYIT-----I---G-EPD-----KAIQMY 860 (1636)
T ss_pred HHHHhcC--c----------------hhHHHHHHHhHHhHHhhcchhhhhheeEE-----c---c-Cch-----HHHHHH
Confidence 8766542 1 23445566666778889999999999865 1 1 344 347889
Q ss_pred HhcCCcchHHHHhccCC-CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 036356 336 AKCGSVDLAPMFFDRTL-DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFI 414 (462)
Q Consensus 336 ~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 414 (462)
-+.|..+...++.++-. +.-..|.-.+..-|-..|+...|.+-|-+.. -|.+-+++|-..+.|++|.++-
T Consensus 861 dk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 99999999999887654 2234466678888889999999988776554 3677889999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 415 MNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 415 ~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
+.-| ..+..--..++.+-..-|+ .|+..+.+
T Consensus 932 kteg-g~n~~k~v~flwaksiggd--aavkllnk 962 (1636)
T KOG3616|consen 932 KTEG-GANAEKHVAFLWAKSIGGD--AAVKLLNK 962 (1636)
T ss_pred hccc-cccHHHHHHHHHHHhhCcH--HHHHHHHh
Confidence 8774 2455555566676666664 56666654
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.50 E-value=1e-05 Score=72.22 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=83.8
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCc-cchHHHHHHHHh----
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV-VMRSAMTVGYGL---- 368 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~---- 368 (462)
.+...|++++|++++.+ + .+.......+..|.+.++++.|.+.++.|.+.+. .+...|..++..
T Consensus 111 i~~~~~~~~~AL~~l~~---------~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHK---------G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHCCCCHHHHHHCCCTT---------T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc---------c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 45566777777777765 2 3455556667777778888888887777765322 223333333322
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHH
Q 036356 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENM 443 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 443 (462)
.+.+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++++. ...| ++.+...++-.....|+..++.
T Consensus 180 ~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp TTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred chhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 2357788888888655 34566777777777778888888888877775 3333 4445556666666666664443
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00021 Score=71.06 Aligned_cols=299 Identities=14% Similarity=0.043 Sum_probs=183.4
Q ss_pred CCceeehhh-hccCCChhhHHHHHHhh-cCCCcc-----hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHh
Q 036356 53 RTIVFLDLY-HLWSRTEWSAFGSFDGL-LSNEEN-----EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125 (462)
Q Consensus 53 ~~~~~~~~~-~~~~~~~~~A~~~~~~m-~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~ 125 (462)
|..++-..- +...+-+.+-+++++++ ..|+.. .-|.||-...+. +..+..+..+++-..+.
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa----------- 1051 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA----------- 1051 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-----------
Confidence 444444444 88888888899999988 333333 334444443333 34556666666555443
Q ss_pred hhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc
Q 036356 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205 (462)
Q Consensus 126 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 205 (462)
|+ +......++-+++|..+|++. ..+....+.||. ..++++.|.++-++..+|
T Consensus 1052 ------~~------ia~iai~~~LyEEAF~ifkkf----------~~n~~A~~VLie---~i~~ldRA~efAe~~n~p-- 1104 (1666)
T KOG0985|consen 1052 ------PD------IAEIAIENQLYEEAFAIFKKF----------DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP-- 1104 (1666)
T ss_pred ------hh------HHHHHhhhhHHHHHHHHHHHh----------cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--
Confidence 43 355667788899999999884 445555555554 457888898888887766
Q ss_pred chHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC
Q 036356 206 VMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283 (462)
Q Consensus 206 ~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 283 (462)
..|+.+..+-.+.+ .+|++-|-+. .|...|..++..+.+.|.+++-.+.+....+...+|.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--------------- 1167 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--------------- 1167 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---------------
Confidence 46899999988888 8888877665 6778899999999999999999999998888776533
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhH------------HHHHHHHh--hCCCCchhHHHHHHHHHHhcCCcchHHHHhc
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPK------------WMDYYIGK--SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 349 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~------------~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 349 (462)
+ =+.+|-+|++.+++.+-++...- .+++.|-+ .-+-.++..|..|...+...|+++.|...-+
T Consensus 1168 -i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1168 -I--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred -c--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 23566677777777765555411 00000000 0000122334444444444444444443332
Q ss_pred cCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 350 RTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+. .+..+|-.+-.+|...+.+..| .|...++-....-..-|+.-|-..|-+++.+.+++..
T Consensus 1245 KA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1245 KA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 22 3455666666666555444332 2222233334455666777777777777777776654
No 89
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.46 E-value=0.00098 Score=63.37 Aligned_cols=382 Identities=13% Similarity=0.090 Sum_probs=231.9
Q ss_pred ceeehhh---hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCc-----chhH----HH
Q 036356 55 IVFLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL-----ESDL----LI 122 (462)
Q Consensus 55 ~~~~~~~---~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~~----l~ 122 (462)
...|.-. ...++-++-++.+++...+.++..-+--|..+++.+++++|.+.+...+....-+ +... +.
T Consensus 138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 138 DRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 3455544 6667778899999998855566667888888999999999998888876443200 0000 22
Q ss_pred HHhhhcC-----------------CCCCe--eeHHHHHHHHHhCCChhHHHHHHHHhh----------------------
Q 036356 123 SLTAVCR-----------------YQPNV--TLRNAMISGYAKNGYAEEAVKLFPKWM---------------------- 161 (462)
Q Consensus 123 ~~~~~~~-----------------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~---------------------- 161 (462)
+...++. .-+|. ..|++|.+-|.+.|++++|..+|++-.
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHH
Confidence 2222222 23343 458999999999999999999988754
Q ss_pred -------------------------------------------------------------------------hhhhhhc
Q 036356 162 -------------------------------------------------------------------------DYYIGKS 168 (462)
Q Consensus 162 -------------------------------------------------------------------------~~~~~~~ 168 (462)
...++
T Consensus 298 ~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~-- 375 (835)
T KOG2047|consen 298 CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK-- 375 (835)
T ss_pred HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH--
Confidence 00000
Q ss_pred CCCCC------chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHH-------hC-c-hHHHHHHHhhhc-C
Q 036356 169 EYRNN------VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG-------LH-E-WSAFGSFDGLLS-N 232 (462)
Q Consensus 169 ~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~-------~~-~-~~a~~~~~~m~~-~ 232 (462)
.+.|. ...|..+.+.|-..|+++.|..+|++..+-+-.+-+.|-..++ ++ + +.|+++.++... |
T Consensus 376 ~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 376 TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence 11111 2245667777888888888888888776543333322222222 11 2 667766665554 2
Q ss_pred Cc--------------------chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHH--HHHHHHhh-----------
Q 036356 233 EE--------------------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--LISLTAVC----------- 279 (462)
Q Consensus 233 ~~--------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~----------- 279 (462)
.. ..|...+..--..|-++....+|+.+.+..+.....+ |..+++..
T Consensus 456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22 2333444444455677777788888887776544333 22233221
Q ss_pred -c----CCCCH-hHHHHHHHHHHc---CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHH----hcCCcchHHH
Q 036356 280 -R----YQPNV-TLWNAMISGYAK---NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYA----KCGSVDLAPM 346 (462)
Q Consensus 280 -~----~~~~~-~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~ 346 (462)
| ..|++ ..|+..+.-+.+ ..+++.|..+|++.+ + |++|...-+ +.-.|+ +.|....|..
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL-----~-~Cpp~~aKt--iyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL-----D-GCPPEHAKT--IYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----h-cCCHHHHHH--HHHHHHHHHHHhhHHHHHHH
Confidence 1 34444 457766655544 336889999998843 3 666543222 222333 3577778888
Q ss_pred HhccCCCC-----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHH---HHHHHHHhcCChHHHHHHHHhC-
Q 036356 347 FFDRTLDK-----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYA---RVVDLLARAGYSNHAFKFIMNM- 417 (462)
Q Consensus 347 ~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m- 417 (462)
++++.... -...||..|.--...=-+.....++++.++ .-|+...-. -..+.=++.|..+.|..++..-
T Consensus 608 iyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 608 IYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 88876531 234678777655554444556678888887 567755433 3444557889999999998876
Q ss_pred ---CCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 418 ---PIELRLSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 418 ---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
+=..+...|.+.=..=.++|+ ++......++
T Consensus 686 q~~dPr~~~~fW~twk~FEvrHGn-edT~keMLRi 719 (835)
T KOG2047|consen 686 QICDPRVTTEFWDTWKEFEVRHGN-EDTYKEMLRI 719 (835)
T ss_pred hcCCCcCChHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 112356678777777788888 5555444433
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.00013 Score=70.94 Aligned_cols=246 Identities=16% Similarity=0.090 Sum_probs=146.7
Q ss_pred hhhcCCCCCceeehhh-----hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHh-cCCcchh
Q 036356 46 LFDGLFDRTIVFLDLY-----HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL-GLELESD 119 (462)
Q Consensus 46 ~~~~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~ 119 (462)
-|-....-|..+-.+| |..-|+.+.|.+-++.+ .+...|..+.+.|.+.++++-|.-.+..|... |.
T Consensus 717 dFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga----- 789 (1416)
T KOG3617|consen 717 DFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA----- 789 (1416)
T ss_pred HhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-----
Confidence 3344445566677666 88999999998777755 45668999999999999999998888887642 22
Q ss_pred HHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhc
Q 036356 120 LLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199 (462)
Q Consensus 120 ~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (462)
+++.+....|+ .+=.-+...-...|.+++|..+|++- + -|..|=+.|-..|.|++|.++-+.
T Consensus 790 ---RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~c-----k---------R~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 790 ---RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQC-----K---------RYDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred ---HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHH-----H---------HHHHHHHHHHhcccHHHHHHHHhh
Confidence 11111111232 22112222235668888888888874 2 233344556667777777777654
Q ss_pred cCCCC-cchHHH-------------HHHHHHhCchHHHHHHHhhhc------------CCcchHHHHHHhhcCccchhhh
Q 036356 200 TLDKD-VVMRSA-------------MIVGYGLHEWSAFGSFDGLLS------------NEENEYGTALDCSCDLEFLEQG 253 (462)
Q Consensus 200 m~~~~-~~~~~~-------------li~~~~~~~~~a~~~~~~m~~------------~~~~~~~~ll~~~~~~~~~~~a 253 (462)
-..-. ..||.. -+.-|-+.+..|+++++-+.+ .|...|......+-..|+.+.|
T Consensus 852 ~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 852 KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 22100 011111 122222222222222222222 3444555555555677778888
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHH
Q 036356 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 333 (462)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 333 (462)
+.+|..... |-++++..|-.|+.++|-++-++ . -|....-.|.+
T Consensus 932 l~~Y~~A~D-------------------------~fs~VrI~C~qGk~~kAa~iA~e--------s---gd~AAcYhlaR 975 (1416)
T KOG3617|consen 932 LSFYSSAKD-------------------------YFSMVRIKCIQGKTDKAARIAEE--------S---GDKAACYHLAR 975 (1416)
T ss_pred HHHHHHhhh-------------------------hhhheeeEeeccCchHHHHHHHh--------c---ccHHHHHHHHH
Confidence 777776543 55666777778888888777655 2 34445556778
Q ss_pred HHHhcCCcchHHHHhccCC
Q 036356 334 MYAKCGSVDLAPMFFDRTL 352 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~ 352 (462)
.|...|++.+|...|.+..
T Consensus 976 ~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 8888888888888876653
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.43 E-value=0.00011 Score=68.88 Aligned_cols=285 Identities=11% Similarity=0.012 Sum_probs=164.1
Q ss_pred hccCCChhhHHHHHHhh---cCCCcch---HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENE---YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~ 135 (462)
+...|+.+.+...+... .+++... .......+...|+++.|.+++++..+..+ .+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-----------------~~~~ 78 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-----------------RDLL 78 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------------CcHH
Confidence 44556777766666665 2222221 22223344678899999999999988754 3333
Q ss_pred eHHHHHHHHHh----CCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356 136 LRNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210 (462)
Q Consensus 136 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 210 (462)
.+.. ...+.. .+..+.+.+.++.. ....|+ ......+...+...|++++|...+++..+.++
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p----- 145 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLW-------APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP----- 145 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhcc-------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----
Confidence 4432 223333 34444444444331 122333 33445566778889999999999988764332
Q ss_pred HHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC--HhHH
Q 036356 211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLW 288 (462)
Q Consensus 211 li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ 288 (462)
.+...+..+...+...|++++|...++...+.... .|+ ...|
T Consensus 146 ---------------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---------------~~~~~~~~~ 189 (355)
T cd05804 146 ---------------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---------------SSMLRGHNW 189 (355)
T ss_pred ---------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---------------CcchhHHHH
Confidence 12233455566677788888888888877764321 122 2345
Q ss_pred HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHH-H--HHHHHHHhcCCcchHHHH---hccCC-C-C-Cccc
Q 036356 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVN-T--VLIDMYAKCGSVDLAPMF---FDRTL-D-K-DVVM 358 (462)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~~-~-~-~~~~ 358 (462)
..+...+...|++++|..++++.+ .... .+..... + .++.-+...|..+.+.++ ...-. . + ....
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~ 264 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHI-----APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLA 264 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh-----ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccch
Confidence 567778889999999999998832 1111 1222111 1 233334445544433333 11111 1 1 1122
Q ss_pred hH--HHHHHHHhcCChHHHHHHHHHHHHCCCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 359 RS--AMTVGYGLHGLGEEGWVLFHHIRKHGIEP--------RHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 359 ~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+. ....++...|+.+.|...++.+......+ ..........++...|++++|.+.+...
T Consensus 265 ~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 265 FNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 56677788899999999999987753221 1222233333556889999999988875
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00028 Score=66.24 Aligned_cols=175 Identities=10% Similarity=0.001 Sum_probs=117.8
Q ss_pred eehhh--hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCC
Q 036356 57 FLDLY--HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 131 (462)
Q Consensus 57 ~~~~~--~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~ 131 (462)
.|..+ +..+|++++|+....++ .+.+...+..-+-++.+.+.+++|..+.+.-..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-------------------- 74 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-------------------- 74 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--------------------
Confidence 34555 88899999999999999 444567888888899999999999966553221
Q ss_pred CCeeeHHH--HHHHHH--hCCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCCCCcc
Q 036356 132 PNVTLRNA--MISGYA--KNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 206 (462)
Q Consensus 132 p~~~~~~~--li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 206 (462)
..+++. +=.+|+ +.+..++|+..++-. .++ ..+...-...+.+.|++++|..+|+.+.+.+..
T Consensus 75 --~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 75 --LLVINSFFFEKAYCEYRLNKLDEALKTLKGL----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred --hhhcchhhHHHHHHHHHcccHHHHHHHHhcc----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 111222 344544 689999999988753 333 346666677788999999999999999776666
Q ss_pred hHHHHHHHHHh-Cc-hHHHHHHHhhhcCCcchHHHHHHh---hcCccchhhhHHHHHHHHHh
Q 036356 207 MRSAMIVGYGL-HE-WSAFGSFDGLLSNEENEYGTALDC---SCDLEFLEQGKIVHGFMIKL 263 (462)
Q Consensus 207 ~~~~li~~~~~-~~-~~a~~~~~~m~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~ 263 (462)
.+..-+.+-.. .+ .....+.+........+|..+.+. +...|++.+|+++++...+.
T Consensus 143 d~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 143 DQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66555543222 22 111123444444335566655543 45789999999999988443
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.38 E-value=2.9e-05 Score=69.32 Aligned_cols=241 Identities=13% Similarity=0.042 Sum_probs=150.9
Q ss_pred HHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc---
Q 036356 143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--- 219 (462)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--- 219 (462)
.+--.|++..++.-.+ . .......+.....-+.+++...|+.+.+..-+..-..|.......+ ..|....
T Consensus 10 n~fy~G~Y~~~i~e~~-~-----~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~l-a~y~~~~~~~ 82 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-L-----KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLL-AEYLSSPSDK 82 (290)
T ss_dssp HHHCTT-HHHHCHHHH-C-----HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHH-HHHHCTSTTH
T ss_pred HHHHhhhHHHHHHHhh-c-----cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHH-HHHHhCccch
Confidence 3444577777775444 2 2222222344455577888888988776665555445555544333 3444442
Q ss_pred hHHHHHHHhhhc---C--CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHH
Q 036356 220 WSAFGSFDGLLS---N--EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294 (462)
Q Consensus 220 ~~a~~~~~~m~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~ 294 (462)
+.++.-+++... + +..........+...|++++|++++... .+.......+..
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------------------~~lE~~al~Vqi 140 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------------------GSLELLALAVQI 140 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------------------CcccHHHHHHHH
Confidence 566665655443 1 2222233335567889999999887642 355666677889
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cCCcchHHHHhccCCC---CCccchHHHHHHHH
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD---KDVVMRSAMTVGYG 367 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 367 (462)
|.+.++++.|.+.++. |.+ +..|. +...+..++.. ...+.+|..+|+++.+ ++..+.+.+..++.
T Consensus 141 ~L~~~R~dlA~k~l~~-----~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKN-----MQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHTT-HHHHHHHHHH-----HHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH-----HHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999999999988 443 33343 33334444433 3469999999999874 45667788888999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCh-HHHHHHHHhC-CCCCC
Q 036356 368 LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYS-NHAFKFIMNM-PIELR 422 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~-~~A~~~~~~m-~~~p~ 422 (462)
..|++++|.+++.+... ..|+ ..+..-++-.....|+. +.+.+.+.++ ...|+
T Consensus 213 ~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 99999999999999776 4555 56666677777777877 7788899888 33454
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=4.6e-05 Score=77.95 Aligned_cols=220 Identities=13% Similarity=0.063 Sum_probs=169.0
Q ss_pred CCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--------CCcchHHHHHHHHHhCc--hHHHHHHHhhhc-CC-cchH
Q 036356 170 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--------KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS-NE-ENEY 237 (462)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~--~~a~~~~~~m~~-~~-~~~~ 237 (462)
.+.+...|-.-|..+...++.++|.+++++... .-...|.+++..-...| +...++|++..+ -| -..|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 344567788888889999999999999987653 12345777777666666 888899999998 33 5678
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317 (462)
Q Consensus 238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (462)
..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.+.+...
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-----------------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-- 1594 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-----------------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-- 1594 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-----------------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--
Confidence 889999999999999999999999873 3467889999999999999999999999864321
Q ss_pred hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--Hh
Q 036356 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQ 392 (462)
Q Consensus 318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~ 392 (462)
.-.-........+..=.+.|+.+.+..+|+.... .-...|+.+|+.-.++|+.+.+..+|++....++.|- -.
T Consensus 1595 --Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1595 --PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred --chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 1111344445555666788999999999998873 3566899999999999999999999999999888886 34
Q ss_pred HHHHHHHHHHhcCChHHH
Q 036356 393 HYARVVDLLARAGYSNHA 410 (462)
Q Consensus 393 ~~~~li~~~~~~g~~~~A 410 (462)
.|.-.++.=-..|+-+.+
T Consensus 1673 ffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHHHHhcCchhhH
Confidence 555555554555654443
No 95
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.2e-06 Score=50.63 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=32.3
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 391 (462)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.31 E-value=0.00014 Score=70.31 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHH
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAM 362 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l 362 (462)
.|......+.+.+..++|...+.+ ..++.| ....|......+...|..++|...|.... +| ++.+-.++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~E-------a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLE-------ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHH-------HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 466666778888999999877766 234444 45667777777888999999999998766 45 45678899
Q ss_pred HHHHHhcCChHHHHH--HHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 363 TVGYGLHGLGEEGWV--LFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 363 i~~~~~~~~~~~a~~--~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
...+.+.|+...|.+ ++.++.+ +.|+ ...|--+...+-+.|+.++|.+.|...
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 999999999988888 9999998 7786 789999999999999999999998865
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00063 Score=66.40 Aligned_cols=219 Identities=8% Similarity=-0.130 Sum_probs=120.9
Q ss_pred CChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceee-hhh-hccCCChhhHHHHHHhhcCCCcchHHH
Q 036356 11 CTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL-DLY-HLWSRTEWSAFGSFDGLLSNEENEYGT 88 (462)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~A~~~~~~m~~~~~~~~~~ 88 (462)
..|..+-+.|.+.++++-|+-.+..|....-. +-+-+....++.... .++ ..+.|..++|+.+|++... |..
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRga-RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DL 831 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGA-RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDL 831 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHH
Confidence 34667777777777777777777777544321 111111122221111 122 6666777778777776622 233
Q ss_pred HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh-----
Q 036356 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY----- 163 (462)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 163 (462)
+=+.|-..|.+++|.++-+.=-+. .-..||-.-..-+-..++++.|++.|++-...
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRi-------------------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~ 892 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRI-------------------HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVF 892 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccce-------------------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHH
Confidence 344455567777777765532222 12345555566666678888888888764200
Q ss_pred hhhh---------cCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhcC
Q 036356 164 YIGK---------SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSN 232 (462)
Q Consensus 164 ~~~~---------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~ 232 (462)
.+.. -.-..|...|.-....+-..|+++.|+.++...+ -|-.+++..+-.| ++|-.+-++- .
T Consensus 893 rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--g 965 (1416)
T KOG3617|consen 893 RMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--G 965 (1416)
T ss_pred HHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--c
Confidence 0000 0012233344444444555677777777666543 2334444444444 5555555543 5
Q ss_pred CcchHHHHHHhhcCccchhhhHHHHHHHH
Q 036356 233 EENEYGTALDCSCDLEFLEQGKIVHGFMI 261 (462)
Q Consensus 233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 261 (462)
|......+.+.|-+.|++.+|..+|-...
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66667777778888888888887776654
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=3.3e-05 Score=73.97 Aligned_cols=90 Identities=11% Similarity=0.005 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR 403 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 403 (462)
+|-..-.+..+.++++.|.+.|.... +| +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|.-.+-...+
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVD 599 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhh
Confidence 44444444444455555555544433 23 23345555555555555555555555554433 1223333333344444
Q ss_pred cCChHHHHHHHHhC
Q 036356 404 AGYSNHAFKFIMNM 417 (462)
Q Consensus 404 ~g~~~~A~~~~~~m 417 (462)
.|.+++|++.+..+
T Consensus 600 vge~eda~~A~~rl 613 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRL 613 (777)
T ss_pred cccHHHHHHHHHHH
Confidence 55555555554444
No 99
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.3e-06 Score=49.04 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 389 (462)
+.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.21 E-value=0.0011 Score=70.36 Aligned_cols=304 Identities=10% Similarity=-0.033 Sum_probs=180.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcC--CCCC--chHHHHHHHHHHhcCCcccHHHHhhccCC--C--Cc---
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE--YRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K--DV--- 205 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~--~~--- 205 (462)
.......+...|++++|...++..... ....+ ..+. ......+...+...|++++|...+++... + +.
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQE-LKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-ccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 344455567789999999998875100 00001 0111 12222333456678999999998876532 1 21
Q ss_pred -chHHHHHHHHHhCc--hHHHHHHHhhhc-------C--CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHH
Q 036356 206 -VMRSAMIVGYGLHE--WSAFGSFDGLLS-------N--EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273 (462)
Q Consensus 206 -~~~~~li~~~~~~~--~~a~~~~~~m~~-------~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (462)
...+.+...+...| ++|...+++... + ...+...+...+...|+++.|...+++.....-....
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---- 566 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL---- 566 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc----
Confidence 12333444455566 788888877765 1 1234455566778899999999998887653110000
Q ss_pred HHHHhhcCCC-CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356 274 SLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352 (462)
Q Consensus 274 ~l~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (462)
...+ ....+..+...+...|++++|...+.+.+.- ....+.......+..+...+...|+.+.|...++...
T Consensus 567 ------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 567 ------EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV-LSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred ------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh-hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0001 2233445556677789999999998875431 1111211123445556667788999999988887663
Q ss_pred C----CC-ccchH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHhC--
Q 036356 353 D----KD-VVMRS-----AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR---HQHYARVVDLLARAGYSNHAFKFIMNM-- 417 (462)
Q Consensus 353 ~----~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-- 417 (462)
. .. ...+. ..+..+...|+.+.|.+++........... ...+..+..++...|++++|...+++.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11 11111 122444567888999888777554211111 112345667788899999999888876
Q ss_pred -----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 418 -----PIELR-LSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 418 -----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
+..++ ..+...+..++...|+.++|...+.+.+..
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22222 245667778888999999998888776543
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0016 Score=65.17 Aligned_cols=267 Identities=12% Similarity=0.025 Sum_probs=141.6
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcC-CCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 210 (462)
.|+..-+.-..++..++-..+-++++++.. .... +.-+...-|.|+-...+ -+...+.+..+++..-|...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIv----L~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~--- 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIV----LDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPD--- 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHh----cCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchh---
Confidence 455667778899999999999999999972 2222 22333444555544443 34556666666666433321
Q ss_pred HHHHHHhCc--hHHHHHHHhhhc-------------------------CCcchHHHHHHhhcCccchhhhHHHHHHHHHh
Q 036356 211 MIVGYGLHE--WSAFGSFDGLLS-------------------------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263 (462)
Q Consensus 211 li~~~~~~~--~~a~~~~~~m~~-------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 263 (462)
+......++ ++|+.+|++... .....|+.+..+-.+.|.+.+|.+-|-.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---- 1129 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---- 1129 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh----
Confidence 122233344 666666655421 2223444444444444444444433321
Q ss_pred CCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcch
Q 036356 264 GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 343 (462)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 343 (462)
..|...|.-+++...+.|.+++-.+++.. .++..-+|.+.+ .||-+|++.+++.+
T Consensus 1130 ------------------adDps~y~eVi~~a~~~~~~edLv~yL~M-----aRkk~~E~~id~--eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1130 ------------------ADDPSNYLEVIDVASRTGKYEDLVKYLLM-----ARKKVREPYIDS--ELIFAYAKTNRLTE 1184 (1666)
T ss_pred ------------------cCCcHHHHHHHHHHHhcCcHHHHHHHHHH-----HHHhhcCccchH--HHHHHHHHhchHHH
Confidence 24566677788888888888877777654 344444555443 57777887777766
Q ss_pred HHHHhccCCCCCcc--------------------------chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036356 344 APMFFDRTLDKDVV--------------------------MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397 (462)
Q Consensus 344 A~~~~~~~~~~~~~--------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 397 (462)
-+..+. -||.. -|..|...+...|+++.|.+.-++. -+..||..+
T Consensus 1185 lE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~V 1255 (1666)
T KOG0985|consen 1185 LEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEV 1255 (1666)
T ss_pred HHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHH
Confidence 555443 23332 3333444444444444443322221 234455555
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036356 398 VDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQT 446 (462)
Q Consensus 398 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 446 (462)
-.+|...+.+.-|.- .-+.+.....-..-|+.-|-..|-+++-+..+
T Consensus 1256 cfaCvd~~EFrlAQi--CGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQI--CGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHhchhhhhHHHh--cCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 555555444433310 00022223334566677777777776655443
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=7.3e-05 Score=69.84 Aligned_cols=237 Identities=14% Similarity=0.105 Sum_probs=152.4
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+.++|+..+|.-.|+.. .+-+...|-.|.......++-..|+..+.+..+..+ -|....-
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-----------------~NleaLm 357 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-----------------TNLEALM 357 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-----------------ccHHHHH
Confidence 88999999999999988 444567999999999999999999999999998875 6778888
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC-----CC---CchHHHHHHHHHHhcCCcccHHHHhhccC-----CCCc
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-----RN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTL-----DKDV 205 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~ 205 (462)
+|.-.|...|.-..|+++++... .... .+ +...-+. ..+.....+....++|-++. ..|.
T Consensus 358 aLAVSytNeg~q~~Al~~L~~Wi-----~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 358 ALAVSYTNEGLQNQALKMLDKWI-----RNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHH-----HhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 88889999999999999999873 1110 00 0000000 00011111122223332221 2455
Q ss_pred chHHHHHHHHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc
Q 036356 206 VMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280 (462)
Q Consensus 206 ~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (462)
..+..|--.|-..+ ++|.+-|+.... | |...||.|-..++...+.++|...|.+.++.
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----------------- 493 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL----------------- 493 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----------------
Confidence 55666655565555 777777777776 3 4556777777777777777777777777764
Q ss_pred CCCC-HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC------CCchhHHHHHHHHHHhcCCcc
Q 036356 281 YQPN-VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------RNNVIVNTVLIDMYAKCGSVD 342 (462)
Q Consensus 281 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~p~~~~~~~li~~~~~~g~~~ 342 (462)
+|+ +..+..|.-+|...|.+++|...|-..+. |...+. .++...|..|=.++.-.++.|
T Consensus 494 -qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~--mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 494 -QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS--MQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred -CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH--hhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 354 44555566667777777777777766554 443321 122335555544444444444
No 103
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=2.7e-06 Score=49.11 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=32.5
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc
Q 036356 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174 (462)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 174 (462)
.+||++|.+|++.|++++|.++|++| .+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M-----~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEM-----LERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHH-----HHcCCCCCC
Confidence 47999999999999999999999999 889999984
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.17 E-value=0.0048 Score=57.71 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccch-HHH
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMR-SAM 362 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l 362 (462)
+|...|..-.+..-++.|..+|.+ ..+.+..+ ++.++++++.-||. ++.+-|.++|+--.+ +|...| ...
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~k-----aR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~Y 441 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKK-----AREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKY 441 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHH-----HhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHH
Confidence 466677777777778888888888 66666666 67788888887765 677888888885442 455444 456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+.-+...++-..|..+|++....++.|+ ...|..+++-=..-|++.-+.++-+++
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6677777888888888888888877776 578888888888888888888887776
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0017 Score=55.99 Aligned_cols=178 Identities=10% Similarity=-0.020 Sum_probs=120.6
Q ss_pred hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+.+..++.+|++++..- ..| +....+.+..+|-...++..|-..++++-+. .|...-|.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql------------------~P~~~qYr 81 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL------------------HPELEQYR 81 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------ChHHHHHH
Confidence 35556677777777655 334 6677888888888899999999999998876 35555444
Q ss_pred H-HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH--HHhcCCcccHHHHhhccCC-CCcchHHHHHHH
Q 036356 139 A-MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM--YAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVG 214 (462)
Q Consensus 139 ~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~ 214 (462)
. -...+-+++.+.+|+++...| ... |+...-..-+.+ ....+|+..+..++++... .+..+.+.....
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~-----~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLL-----LDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHh-----cCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 2 235567889999999999887 221 222222222222 3356889999999998873 444444444444
Q ss_pred HHhCc--hHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC
Q 036356 215 YGLHE--WSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE 266 (462)
Q Consensus 215 ~~~~~--~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (462)
..+.| +.|.+-|+...+ .....|+..+..| +.++++.|++...+++++|+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 45556 888888888777 4556666655444 567888888888888888875
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=7e-05 Score=69.95 Aligned_cols=244 Identities=13% Similarity=0.074 Sum_probs=169.9
Q ss_pred HHHhcCCcccHHHHhhccCCC---CcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhH
Q 036356 183 MYAKCGSVDLAPMFFDRTLDK---DVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGK 254 (462)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~ 254 (462)
-+.+.|++.+|.-.|+...+. +...|--|-..-..++ ..|+..+++-.+ .|....-.|.-.|...|.-..|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888876644 3455666666666666 778888888777 45666777778888999999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH
Q 036356 255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334 (462)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 334 (462)
..++..++...+ |..+... .++...-+. ..+.......+..++|-++ ....+.++|..+...|--.
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a---~~~~~~~~~--~s~~~~~~l~~i~~~fLea----a~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSA---GENEDFENT--KSFLDSSHLAHIQELFLEA----ARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHhCcc-----chhcccc---CccccccCC--cCCCCHHHHHHHHHHHHHH----HHhCCCCCChhHHhhhHHH
Confidence 998888765532 0000000 000000000 1122222334445555442 3345555777788888888
Q ss_pred HHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356 335 YAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA 410 (462)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 410 (462)
|--.|++++|...|+...+ | |...||.|.-.++...+.++|+..+.+..+ ++|+ +....-|.-.|...|.+++|
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHH
Confidence 9999999999999998763 4 778999999999999999999999999999 9999 66777778889999999999
Q ss_pred HHHHHhC------------CCCCCHHHHHHHHHHHHccCChHHH
Q 036356 411 FKFIMNM------------PIELRLSVRRALLSAWKIPMQQWEN 442 (462)
Q Consensus 411 ~~~~~~m------------~~~p~~~~~~~l~~~~~~~~~~~~a 442 (462)
.+.|=.. .-.++...|.+|=.++...++.+.+
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 8876554 0112346888877777777766533
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.11 E-value=0.00016 Score=63.30 Aligned_cols=51 Identities=10% Similarity=-0.121 Sum_probs=31.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHccCChHHHHHHH
Q 036356 396 RVVDLLARAGYSNHAFKFIMNM-PIE---L-RLSVRRALLSAWKIPMQQWENMLQT 446 (462)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m-~~~---p-~~~~~~~l~~~~~~~~~~~~a~~~~ 446 (462)
.+...+.+.|++++|...+++. ... | ....+..+..++...|+.++|...+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445566777777777766665 211 2 2456667777777777777776544
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.08 E-value=0.00023 Score=62.24 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch-hHHHHHHHHHHhc--------CCcchHHHHhccCCC--CC
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV-IVNTVLIDMYAKC--------GSVDLAPMFFDRTLD--KD 355 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~~--~~ 355 (462)
.+..+..++.+.|++++|...+++.+. ...-.|.. .++..+..++.+. |+.+.|.+.|+++.+ |+
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 556666777777777777777777431 11111111 1333344444433 566777777776653 33
Q ss_pred cc-chH-----------------HHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHHhcCChHHHHHHHH
Q 036356 356 VV-MRS-----------------AMTVGYGLHGLGEEGWVLFHHIRKHG-IEP-RHQHYARVVDLLARAGYSNHAFKFIM 415 (462)
Q Consensus 356 ~~-~~~-----------------~li~~~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 415 (462)
.. .+. .+...|.+.|++++|...+++..+.. -.| ....+..+..++...|++++|...++
T Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 21 111 23445666777777777777777641 112 24567777777777777777777777
Q ss_pred hC
Q 036356 416 NM 417 (462)
Q Consensus 416 ~m 417 (462)
.+
T Consensus 228 ~l 229 (235)
T TIGR03302 228 VL 229 (235)
T ss_pred HH
Confidence 65
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.08 E-value=0.0022 Score=68.22 Aligned_cols=328 Identities=9% Similarity=0.014 Sum_probs=191.6
Q ss_pred hccCCChhhHHHHHHhh----cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee--
Q 036356 62 HLWSRTEWSAFGSFDGL----LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT-- 135 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~-- 135 (462)
....|++..+...++.+ ...+..........+...|+++++..++....+.--..... ..+...
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~----------~~~~~~~~ 453 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIE----------LDGTLQAE 453 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcc----------cchhHHHH
Confidence 33445555555555544 11122222333444456677888887777765431100000 001111
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC----chHHHHHHHHHHhcCCcccHHHHhhccCC-------CC
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KD 204 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~ 204 (462)
....+...+...|++++|...+++. ...-...+ ....+.+...+...|++++|...+++... +.
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELA-----LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH-----HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH
Confidence 1122234456799999999999885 22111111 12445566677889999999999877652 11
Q ss_pred c--chHHHHHHHHHhCc--hHHHHHHHhhhc-------CC----cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcch
Q 036356 205 V--VMRSAMIVGYGLHE--WSAFGSFDGLLS-------NE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269 (462)
Q Consensus 205 ~--~~~~~li~~~~~~~--~~a~~~~~~m~~-------~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 269 (462)
. .++..+...+...| ++|...+++... ++ ...+..+...+...|++++|...+.......-....
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 1 22333444555666 777777776555 11 122334445566779999999999887654211000
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch-hHH-HHHHHHHHhcCCcchHHHH
Q 036356 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV-IVN-TVLIDMYAKCGSVDLAPMF 347 (462)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~-~~li~~~~~~g~~~~A~~~ 347 (462)
......+..+...+...|+.++|...+.....- ....+..... ... ...+..+...|+.+.|..+
T Consensus 609 ------------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 609 ------------QQQLQCLAMLAKISLARGDLDNARRYLNRLENL-LGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW 675 (903)
T ss_pred ------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 012334445666788899999999999875331 1111211111 111 1122445568899999999
Q ss_pred hccCCCCCcc-c------hHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 036356 348 FDRTLDKDVV-M------RSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIM 415 (462)
Q Consensus 348 ~~~~~~~~~~-~------~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 415 (462)
+.....+... . +..+..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 676 LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8776543211 1 345667788899999999999987764 43333 4567777888999999999999988
Q ss_pred hC
Q 036356 416 NM 417 (462)
Q Consensus 416 ~m 417 (462)
+.
T Consensus 756 ~A 757 (903)
T PRK04841 756 EA 757 (903)
T ss_pred HH
Confidence 87
No 110
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=6.2e-06 Score=47.17 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=30.5
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC
Q 036356 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 172 (462)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 172 (462)
.+|+.+|.+|++.|+++.|.++|++| .+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M-----~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEM-----KEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHH-----HHhCCCC
Confidence 68999999999999999999999999 7888887
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.03 E-value=0.00041 Score=69.01 Aligned_cols=151 Identities=13% Similarity=0.014 Sum_probs=93.0
Q ss_pred CHhHHHHHHHHHHc----CC----ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---
Q 036356 284 NVTLWNAMISGYAK----NG----YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--- 352 (462)
Q Consensus 284 ~~~~~~~li~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 352 (462)
+..+|..+...|.+ .+ +...|...+...+. -..-+..+||.|--. .-.|.+.-|.-.|-+-.
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~------L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS------LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH------HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 45556666555444 11 22356666655321 112345666665443 55567777766665443
Q ss_pred CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHH
Q 036356 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIELRLS 424 (462)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~ 424 (462)
+....+|..+.-.+....+++-|...|...+. +.|+ ...|--........|+.-++..+|..- +--|+..
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 34667788888888888899999999998888 7775 556655555555678888888887762 4445665
Q ss_pred HHHHHHHHHHccCChHHHH
Q 036356 425 VRRALLSAWKIPMQQWENM 443 (462)
Q Consensus 425 ~~~~l~~~~~~~~~~~~a~ 443 (462)
-|..-..--...|+.++-+
T Consensus 925 Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred HHHHHHHHHHhccchHHHH
Confidence 5555555555556655544
No 112
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=8.9e-05 Score=68.55 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=52.6
Q ss_pred HHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 036356 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAF 411 (462)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~ 411 (462)
..+...++++.|..+|+++.+.+......+++.+...++-.+|.+++++... ..| +...+..-...|.+.++++.|+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3333444455555555555443333444444444444444555555555443 222 2333333444444555555555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHH
Q 036356 412 KFIMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTI 447 (462)
Q Consensus 412 ~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 447 (462)
++.+++ ...|+ ..+|..|..+|...|++++|+..+.
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 555554 33332 2355555555555555555554443
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.02 E-value=0.00083 Score=69.28 Aligned_cols=237 Identities=13% Similarity=0.055 Sum_probs=166.7
Q ss_pred ChhhHHHHHHhh-cCCC-cchHHHHHHhhcCccchhhHHHHHHHHHHh-cCCcchhHHHHHhhhcCCCCCeeeHHHHHHH
Q 036356 67 TEWSAFGSFDGL-LSNE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKL-GLELESDLLISLTAVCRYQPNVTLRNAMISG 143 (462)
Q Consensus 67 ~~~~A~~~~~~m-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~ 143 (462)
.++.|.++-+.. -.|| +..|-..|....+.++.+.|+++.++.+.. +++ .+ .--...|.++++.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R--Ee-----------eEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR--EE-----------EEKLNIWIAYLNL 1506 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc--hh-----------HHHHHHHHHHHhH
Confidence 455666666655 5565 567989999999999999999999998754 330 00 1223468888888
Q ss_pred HHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCc-
Q 036356 144 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE- 219 (462)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~- 219 (462)
-..-|.-+...++|++. ..-.. --.+|..|...|.+.+.+++|.++|+.|.+ .....|...+..+.+++
T Consensus 1507 En~yG~eesl~kVFeRA------cqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1507 ENAYGTEESLKKVFERA------CQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHhhCcHHHHHHHHHHH------HHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH
Confidence 88888888999999885 22222 245788899999999999999999999985 35567888888887777
Q ss_pred -hHHHHHHHhhhc--CCcc---hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356 220 -WSAFGSFDGLLS--NEEN---EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293 (462)
Q Consensus 220 -~~a~~~~~~m~~--~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 293 (462)
+.|..++.+..+ |... ........-.+.|+.+.++.+|+..+... +.-...|+..|+
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-----------------PKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-----------------PKRTDLWSVYID 1642 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-----------------ccchhHHHHHHH
Confidence 788888887777 5522 22333333357788888888888877653 235667888888
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcCCcchHH
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAP 345 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 345 (462)
.-.+.|+.+.+..+|++ ....++.|- -..|...+..=.+.|+-..++
T Consensus 1643 ~eik~~~~~~vR~lfeR-----vi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFER-----VIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHccCCHHHHHHHHHH-----HHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 88888888888888888 445566553 345555555444455544333
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.00 E-value=0.0015 Score=66.52 Aligned_cols=166 Identities=11% Similarity=0.099 Sum_probs=112.0
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchH
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMR 208 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~ 208 (462)
..+...|..|+..+...+++++|.++.+.- ..-.+-....|-.+...+...++.+.+.-+ .+.. ++..-|
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~------l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~ 99 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEH------LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW 99 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence 346677899999999999999999999874 222222333444444467777777766555 2221 111112
Q ss_pred HHHHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHh
Q 036356 209 SAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286 (462)
Q Consensus 209 ~~li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (462)
+.+ ..+...|.. -+...+-.+..+|-+.|+.+++..+|+++++... -|+.
T Consensus 100 ~~v-----------e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-----------------~n~~ 151 (906)
T PRK14720 100 AIV-----------EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-----------------DNPE 151 (906)
T ss_pred hHH-----------HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-----------------ccHH
Confidence 211 112222223 3445777888999999999999999999999762 5788
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 353 (462)
..|.+...|... ++++|++++.+.+.. |...+++..+..+|.++..
T Consensus 152 aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 152 IVKKLATSYEEE-DKEKAITYLKKAIYR--------------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------HHhhhcchHHHHHHHHHHh
Confidence 899999999999 999999999884432 4455566666776666654
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.99 E-value=0.00047 Score=60.47 Aligned_cols=176 Identities=9% Similarity=-0.062 Sum_probs=100.8
Q ss_pred Cceeehhh------hccCCChhhHHHHHHhh--cCCCcchH-HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHH
Q 036356 54 TIVFLDLY------HLWSRTEWSAFGSFDGL--LSNEENEY-GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 124 (462)
Q Consensus 54 ~~~~~~~~------~~~~~~~~~A~~~~~~m--~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~ 124 (462)
|...|.++ |...|+..-|+.-|... .+||-..- ---...+.+.|.++.|..=|+..++... +.......
T Consensus 68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~--s~~~~~ea 145 (504)
T KOG0624|consen 68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP--SNGLVLEA 145 (504)
T ss_pred CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC--CcchhHHH
Confidence 44555555 88888888888888888 77774322 2223456789999999999999988765 22222222
Q ss_pred hhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCC
Q 036356 125 TAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD 204 (462)
Q Consensus 125 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 204 (462)
+.+.............+..+.-.|+...|+.....+ -.-.+.|...|..-..+|...|++..|+.=+....+..
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l------lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL------LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH------HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 222211111111222334455567777777777664 12234466666667777777777777765554433211
Q ss_pred cchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHh
Q 036356 205 VVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263 (462)
Q Consensus 205 ~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 263 (462)
. .+..++..+-..+...|+.+.++....+-++.
T Consensus 220 ~--------------------------DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 220 Q--------------------------DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred c--------------------------cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 0 22333334444455666666666666666553
No 116
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.1e-05 Score=44.90 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=24.9
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 387 (462)
++|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887664
No 117
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0017 Score=60.46 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=64.1
Q ss_pred HHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChH
Q 036356 333 DMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSN 408 (462)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 408 (462)
..+.+.|++..|.+.|.++.. .|...|+.-.-+|.+.|.+..|+.=.+...+ +.|+ ...|..=..++....+|+
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777653 3566777777777777777777777666666 4555 445555555666666777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHc
Q 036356 409 HAFKFIMNM-PIELRLSVRRALLSAWKI 435 (462)
Q Consensus 409 ~A~~~~~~m-~~~p~~~~~~~l~~~~~~ 435 (462)
+|++.|.+. ...|+..-+.--++-|..
T Consensus 444 kAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 777777776 445555444433333333
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.00059 Score=65.78 Aligned_cols=226 Identities=11% Similarity=-0.006 Sum_probs=169.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHH
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVG 214 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~ 214 (462)
-..+...+...|-..+|..+|++. ..|.-.|.+|+..|+..+|..+..+-. +||..-|..+.+.
T Consensus 401 q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 345667789999999999999994 456778889999999999999876554 4677777777776
Q ss_pred HHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356 215 YGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292 (462)
Q Consensus 215 ~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li 292 (462)
..... +.|.++++.... ..-..+.....+.++++++.+.++.-.+.. .....+|-..-
T Consensus 467 ~~d~s~yEkawElsn~~sa---rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-----------------plq~~~wf~~G 526 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISA---RAQRSLALLILSNKDFSEADKHLERSLEIN-----------------PLQLGTWFGLG 526 (777)
T ss_pred ccChHHHHHHHHHhhhhhH---HHHHhhccccccchhHHHHHHHHHHHhhcC-----------------ccchhHHHhcc
Confidence 66666 888888876532 111222222345788999999888777654 24678888888
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCCC---CccchHHHHHHHHh
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMTVGYGL 368 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 368 (462)
.+..+.++.+.|.+.|.+. ....|+ ...||.+-.+|.+.|+-.+|...+.+..+- +-..|...+..-.+
T Consensus 527 ~~ALqlek~q~av~aF~rc-------vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRC-------VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred HHHHHHhhhHHHHHHHHHH-------hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 8899999999999999873 345665 678999999999999999999999988764 44456677888889
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHh
Q 036356 369 HGLGEEGWVLFHHIRKHG-IEPRHQHYARVVDLLAR 403 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~ 403 (462)
.|.+++|.+.+.++.+.. ..-|......++....+
T Consensus 600 vge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred cccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 999999999998887651 11244455555554443
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.90 E-value=9.8e-05 Score=58.72 Aligned_cols=98 Identities=8% Similarity=-0.107 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356 328 NTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR 403 (462)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 403 (462)
+..+...+...|++++|...|+.... .+...|..+..++...|++++|...|+.... ..|+ ...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHH
Confidence 44567788889999999999998763 3566778888899999999999999999998 6675 7788888899999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHH
Q 036356 404 AGYSNHAFKFIMNM-PIELRLSVRR 427 (462)
Q Consensus 404 ~g~~~~A~~~~~~m-~~~p~~~~~~ 427 (462)
.|++++|...++.. ...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999997 6667654443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0011 Score=56.24 Aligned_cols=156 Identities=13% Similarity=-0.000 Sum_probs=119.4
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317 (462)
Q Consensus 238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (462)
...-..+.-.|+-+....+........ ..|....+..+....+.|++.+|...|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-----------------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA------ 126 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-----------------PKDRELLAAQGKNQIRNGNFGEAVSVLRKA------ 126 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-----------------cccHHHHHHHHHHHHHhcchHHHHHHHHHH------
Confidence 445556666777777766665543321 245566667888899999999999999883
Q ss_pred hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 036356 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394 (462)
Q Consensus 318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 394 (462)
...-++|...|+.+.-+|.+.|+.+.|..-|.+..+ .+....|.|...|.-.|+.+.|..++.+....+- -|...-
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~ 205 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVR 205 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHH
Confidence 234567889999999999999999999998887663 4667788889999999999999999999887332 146666
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC
Q 036356 395 ARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.-+..+....|++++|..+...-
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHhhcCChHHHHhhcccc
Confidence 77788888999999999887665
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.88 E-value=0.00017 Score=57.39 Aligned_cols=104 Identities=10% Similarity=-0.083 Sum_probs=85.9
Q ss_pred HHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 036356 346 MFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-R 422 (462)
Q Consensus 346 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 422 (462)
.+|++..+-+...+..+...+...|++++|...|+.... ..|+ ...|..+..++.+.|++++|...|+.. ...| +
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344444433343466678888999999999999999998 7775 788899999999999999999999998 4445 6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 423 LSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
...+..+..++...|+.++|+..+.+.+.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999988887655
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.0022 Score=59.27 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=103.9
Q ss_pred CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CC-Cccc
Q 036356 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVM 358 (462)
Q Consensus 282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~ 358 (462)
.|+...+...+.+......-..+-.++.+ ..+ ..-...-|..-+ .+...|+.++|+..++.+. .| |..-
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~ 342 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAK-----RSK--RGGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYY 342 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHH-----HhC--ccchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHH
Confidence 35555566666554444333333333322 111 111233344333 3446688888888888765 35 4445
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHc
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKI 435 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~ 435 (462)
+......+.+.++.++|.+.++++.. ..|+ ....-.+.++|.+.|++.+|+++++.. ..+-|+..|..|.++|..
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 55666788888888888888888888 7777 455667778888888888888888887 445577888888888888
Q ss_pred cCChHHHHHHHHhh
Q 036356 436 PMQQWENMLQTIRG 449 (462)
Q Consensus 436 ~~~~~~a~~~~~~~ 449 (462)
.|+..++....-++
T Consensus 421 ~g~~~~a~~A~AE~ 434 (484)
T COG4783 421 LGNRAEALLARAEG 434 (484)
T ss_pred hCchHHHHHHHHHH
Confidence 88888877665554
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.86 E-value=0.001 Score=66.35 Aligned_cols=268 Identities=12% Similarity=0.009 Sum_probs=146.2
Q ss_pred CCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcch-HHHHHHHH--HhCc--hHHHHHHHhhhc----------CCcc
Q 036356 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM-RSAMIVGY--GLHE--WSAFGSFDGLLS----------NEEN 235 (462)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~li~~~--~~~~--~~a~~~~~~m~~----------~~~~ 235 (462)
+.|...|..+..+|.++|.+..|.++|++...-++.+ |...-.+- +..| .+|+..+..... .-..
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE 672 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE 672 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3356778888888888888888888887766543333 22222222 2233 666666666555 1112
Q ss_pred hHHHHHHhhcCccc-------hhhhHHHHHHHHHhCCCcchHHHHHHHHhh----cCCCCHhH--HHHHHHH-HHcCCCh
Q 036356 236 EYGTALDCSCDLEF-------LEQGKIVHGFMIKLGLELESDLLISLTAVC----RYQPNVTL--WNAMISG-YAKNGYA 301 (462)
Q Consensus 236 ~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~--~~~li~~-~~~~~~~ 301 (462)
++-.+...+.-.|- ++.+.+.|.-...+....+...+..+-.+| ...||... +..++.. .-..+..
T Consensus 673 ~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l 752 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGAL 752 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccC
Confidence 22222222222232 334444444444444444555555444442 24555221 2112111 2222222
Q ss_pred ---h---HHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cC----CcchHHHHhccCC---CCCccchHHHHH
Q 036356 302 ---E---EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CG----SVDLAPMFFDRTL---DKDVVMRSAMTV 364 (462)
Q Consensus 302 ---~---~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~ 364 (462)
+ -+.+.+.. ......+..+|..|...|.+ .| +...|...+.... ..+..+||.|--
T Consensus 753 ~~~d~l~Lg~~c~~~-------hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGV 825 (1238)
T KOG1127|consen 753 KKNDLLFLGYECGIA-------HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGV 825 (1238)
T ss_pred cchhHHHHHHHHhhH-------HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 1 11111111 12222334454444443332 22 2235667776654 356777877655
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHH
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 441 (462)
. ...|++.-|...|-+-.. ..|. ..+|.-+.-.+.+..+++.|...|... .+.| +..-|--........|+.-+
T Consensus 826 l-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~ 902 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIE 902 (1238)
T ss_pred h-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHH
Confidence 5 666788877777766555 5565 678888888899999999999999998 6666 45566666555666677777
Q ss_pred HHHHHHh
Q 036356 442 NMLQTIR 448 (462)
Q Consensus 442 a~~~~~~ 448 (462)
++..+..
T Consensus 903 ~~~lfaH 909 (1238)
T KOG1127|consen 903 RLILFAH 909 (1238)
T ss_pred HHHHHHh
Confidence 7655543
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0042 Score=52.83 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=72.2
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC-CccchHHHHHHHHh----
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMTVGYGL---- 368 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---- 368 (462)
.|++.|++++|++.... + -+......=+..+.+..+++.|.+.++.|.+. +..|.+.|..++.+
T Consensus 117 i~~~~~~~deAl~~~~~---------~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHL---------G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HhhcCCChHHHHHHHhc---------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 45566666666665543 1 11222222233344555566666666666653 33444444444443
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHH
Q 036356 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWEN 442 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a 442 (462)
.+.+..|.-+|++|.+ ...|+..+.+-...++...|++++|..++++. ....++.+...++-.....|+..++
T Consensus 186 gek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred chhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 2345666666666654 35566666666666666666666666666665 3233455555554444455554443
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.00061 Score=54.36 Aligned_cols=121 Identities=9% Similarity=0.022 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCCCCCccc-hH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHH
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM-RS-----AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVV 398 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li 398 (462)
.|..++..+ ..++...+...++.+.+....+ |. .+...+...|++++|...|+......-.|+ ......|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444444444 3566666666666665322222 32 344667777888888888888887552332 22444566
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 399 DLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
..+...|++++|+..++.. +-......+......+...|+.++|...+.+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777888888888888776 2233455667777888888888888776654
No 126
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.81 E-value=0.013 Score=51.77 Aligned_cols=278 Identities=12% Similarity=0.044 Sum_probs=173.5
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHH---HHHHhcCCcccHHHHhhccCCCCcchHHHHH---H
Q 036356 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI---DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI---V 213 (462)
Q Consensus 140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li---~ 213 (462)
+-..+...|++..|+.-|..- +..|+..|.++. ..|...|+-..|+.=|+++.+..+..+.+-+ .
T Consensus 44 lGk~lla~~Q~sDALt~yHaA---------ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAA---------VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHH---------HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 445556666666666666553 333333343333 3455566666665555555432222222211 2
Q ss_pred HHHhCc--hHHHHHHHhhhc--CCcc----------------hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHH
Q 036356 214 GYGLHE--WSAFGSFDGLLS--NEEN----------------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273 (462)
Q Consensus 214 ~~~~~~--~~a~~~~~~m~~--~~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (462)
.+.+.| +.|..=|+.... |+.. .....+..+...|+...|+.....+++-.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--------- 185 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--------- 185 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---------
Confidence 234445 666666666555 3221 12233444556677777777777776643
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356 274 SLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353 (462)
Q Consensus 274 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 353 (462)
+.|+..|..-..+|...|.+..|+.-++. ..+. ..-++.+.--+-..+...|+.+.++...++..+
T Consensus 186 --------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~-----askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 186 --------PWDASLRQARAKCYIAEGEPKKAIHDLKQ-----ASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred --------cchhHHHHHHHHHHHhcCcHHHHHHHHHH-----HHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 36888888888999999999999887765 2222 223455555667778889999999988888764
Q ss_pred --CCcc-c---hHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHhcCChHHHHHH
Q 036356 354 --KDVV-M---RSAM---------TVGYGLHGLGEEGWVLFHHIRKHGIEPR-----HQHYARVVDLLARAGYSNHAFKF 413 (462)
Q Consensus 354 --~~~~-~---~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~ 413 (462)
||.. + |-.| +......+++.++++-.+...+ ..|. ...+..+-..+...|++.+|++.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 4433 2 2111 1223445677777777777776 4444 22344555667778999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 414 IMNM-PIELR-LSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 414 ~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
..+. .+.|| ..++---..+|.....++.|+..++...+
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9887 77776 77888888999999999999988876543
No 127
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0042 Score=53.65 Aligned_cols=319 Identities=11% Similarity=-0.017 Sum_probs=207.8
Q ss_pred chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163 (462)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (462)
.-+.+++..+.+-.++..|.+++.--.++.. .+....+.|..+|-...++..|-..|+++
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p-----------------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL--- 70 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSP-----------------RSRAGLSLLGYCYYRLQEFALAAECYEQL--- 70 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3467788888888899999999888777654 47788888999999999999999999996
Q ss_pred hhhhcCCCCCchHHHH-HHHHHHhcCCcccHHHHhhccCC-CCcchHHHHHHHH---HhCc-hHHHHHHHhhhc-CCcch
Q 036356 164 YIGKSEYRNNVIVNTV-LIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMIVGY---GLHE-WSAFGSFDGLLS-NEENE 236 (462)
Q Consensus 164 ~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~---~~~~-~~a~~~~~~m~~-~~~~~ 236 (462)
.-..|...-|.. -...+.+.+.+..|.++...|.+ ++...-..-+.+- .... ..+..+.++... .+..+
T Consensus 71 ----~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~ 146 (459)
T KOG4340|consen 71 ----GQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADG 146 (459)
T ss_pred ----HhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccch
Confidence 223444444432 23456678899999999999886 3333222223322 2222 667777777753 44444
Q ss_pred HHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316 (462)
Q Consensus 237 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 316 (462)
.+...-...+.|+++.|.+-|+...+-|-- .....||.-+. ..+.|+.+.|++...+.+++.|
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGy----------------qpllAYniALa-Hy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGY----------------QPLLAYNLALA-HYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCC----------------CchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhh
Confidence 444444556999999999999998875431 34556766554 4567899999999999776665
Q ss_pred HhhC---C-----CCc------hh--HHHHHHHH-------HHhcCCcchHHHHhccCCC-----CCccchHHHHHHHHh
Q 036356 317 GKSE---Y-----RNN------VI--VNTVLIDM-------YAKCGSVDLAPMFFDRTLD-----KDVVMRSAMTVGYGL 368 (462)
Q Consensus 317 ~~~~---~-----~p~------~~--~~~~li~~-------~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 368 (462)
+... + .|| +. .-+.++.+ +-+.|+.+.|.+-+-.|+. .|.+|...+.-.=.
T Consensus 210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~- 288 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM- 288 (459)
T ss_pred hcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-
Confidence 5321 1 011 11 11233333 4578899999999999973 46677655433222
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhCC---C-CCCHHHHHHHHHHHHc-cCChHHH
Q 036356 369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNMP---I-ELRLSVRRALLSAWKI-PMQQWEN 442 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-~p~~~~~~~l~~~~~~-~~~~~~a 442 (462)
.+++....+-+.-+.. +.|- ..||.-++-.||+..-++-|-.++-+-. + -.+...|+ |+.++.. +-..++|
T Consensus 289 ~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea 365 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEA 365 (459)
T ss_pred cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHH
Confidence 3444444444444554 4453 6899999999999999999999988751 1 12333444 3344333 3455666
Q ss_pred HHHHH
Q 036356 443 MLQTI 447 (462)
Q Consensus 443 ~~~~~ 447 (462)
...+.
T Consensus 366 ~KKL~ 370 (459)
T KOG4340|consen 366 FKKLD 370 (459)
T ss_pred HHHHH
Confidence 65554
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.78 E-value=0.00089 Score=67.99 Aligned_cols=193 Identities=9% Similarity=-0.037 Sum_probs=99.8
Q ss_pred CChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh----hccCCChhhHHHHHHhhcCCCcchH
Q 036356 11 CTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY----HLWSRTEWSAFGSFDGLLSNEENEY 86 (462)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~m~~~~~~~~ 86 (462)
..+..|+..+-..+++++|.++.+...+.. |+...+-.+ +.+.++..++..+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~------------P~~i~~yy~~G~l~~q~~~~~~~~lv------------ 87 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH------------KKSISALYISGILSLSRRPLNDSNLL------------ 87 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------------CcceehHHHHHHHHHhhcchhhhhhh------------
Confidence 347788999989999999999998776664 344433222 4444444444333
Q ss_pred HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhh
Q 036356 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG 166 (462)
Q Consensus 87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 166 (462)
.++.......++.....++..|...+- +...+..+..+|-+.|+.++|..+|++. .
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~~~------------------~k~Al~~LA~~Ydk~g~~~ka~~~yer~-----L 143 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLYGE------------------NKLALRTLAEAYAKLNENKKLKGVWERL-----V 143 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhhhh------------------hhHHHHHHHHHHHHcCChHHHHHHHHHH-----H
Confidence 233333333333333333344433322 2334444455555555555555555554 2
Q ss_pred hcCCCCCchHHHHHHHHHHhcCCcccHHHHh--------------------hccCCCCcchHHHHHHHHHhCchHHHHHH
Q 036356 167 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF--------------------DRTLDKDVVMRSAMIVGYGLHEWSAFGSF 226 (462)
Q Consensus 167 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~--------------------~~m~~~~~~~~~~li~~~~~~~~~a~~~~ 226 (462)
+.. +-|..+.|.+...|+.. ++++|+.++ .++...++.-... -+.+.
T Consensus 144 ~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~-----------f~~i~ 210 (906)
T PRK14720 144 KAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDF-----------FLRIE 210 (906)
T ss_pred hcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchH-----------HHHHH
Confidence 222 22344444455555444 555554444 4443322222111 11222
Q ss_pred Hhhhc-----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhC
Q 036356 227 DGLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 264 (462)
Q Consensus 227 ~~m~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 264 (462)
+.+.. --..++-.+-..|...++++++..++..+.+..
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 22222 123345556677888899999999999998865
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0023 Score=54.33 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=122.4
Q ss_pred HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHH
Q 036356 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVG 365 (462)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 365 (462)
..+-..+...|+-+....+..... .....+....+..+....+.|++..|...|++... +|...|+.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~------~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA------IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh------ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 556667777888888877766521 12233455666688889999999999999998874 688899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHH
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWEN 442 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a 442 (462)
|.+.|+.+.|..-+.+..+ +.|+ ...++-+.-.+.-.|+.+.|..++... .-..|..+-..|.......|++.+|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999999999998 8887 677888888999999999999999988 3233788888899999999999988
Q ss_pred HHHH
Q 036356 443 MLQT 446 (462)
Q Consensus 443 ~~~~ 446 (462)
....
T Consensus 222 ~~i~ 225 (257)
T COG5010 222 EDIA 225 (257)
T ss_pred Hhhc
Confidence 7544
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.77 E-value=0.0017 Score=65.22 Aligned_cols=130 Identities=10% Similarity=-0.031 Sum_probs=102.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHH
Q 036356 320 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYA 395 (462)
Q Consensus 320 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~ 395 (462)
.+..+...+-.|.....+.|..++|..+++...+ || ......+...+.+.+++++|+...++... ..|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3455677788888888889999999999988773 54 44566788888899999999999999888 6777 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 396 RVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
.+..++.+.|++++|..+|++. .-.| +...+..+..++...|+.++|...+.+.+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777888899999999999988 2234 477888888888999999988877766543
No 131
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.2e-05 Score=43.02 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=21.9
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 135 TLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
++||++|++|++.|++++|.++|++|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHH
Confidence 47888888888888888888888887
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.75 E-value=0.00038 Score=58.65 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=71.9
Q ss_pred CCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHH
Q 036356 65 SRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMI 141 (462)
Q Consensus 65 ~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li 141 (462)
.++.++++..++.. .+.|...|..+...+...|+++.|...|++..+..+ .+...+..+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----------------~~~~~~~~lA 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----------------ENAELYAALA 114 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHH
Confidence 44555666666655 445566677777777777777777777777776654 4556666666
Q ss_pred HHH-HhCCC--hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356 142 SGY-AKNGY--AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201 (462)
Q Consensus 142 ~~~-~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (462)
.++ ...|+ .++|.+++++. . ..-+-+..++..+...+.+.|++++|+..++++.
T Consensus 115 ~aL~~~~g~~~~~~A~~~l~~a-----l-~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 115 TVLYYQAGQHMTPQTREMIDKA-----L-ALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHhcCCCCcHHHHHHHHHH-----H-HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 653 55555 47777777774 2 2222345566666677777777777777777665
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.75 E-value=0.00057 Score=63.33 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC---CccchHHHH
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMT 363 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 363 (462)
.-..++..+...++++.|.++|++ +.... |+. ...++..+...++-.+|.+++++..+. +......-.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~-----L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa 241 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEK-----LRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQA 241 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHH-----HHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345566777788999999999999 44443 553 445788888888888999999887753 333444445
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036356 364 VGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNMPI 419 (462)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 419 (462)
..|.+.++++.|+++.+++.. ..|+ ..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 678899999999999999999 8898 67999999999999999999999998843
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.73 E-value=0.042 Score=51.72 Aligned_cols=75 Identities=7% Similarity=0.086 Sum_probs=59.4
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHH
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRS 209 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~ 209 (462)
-|..+|+.||.-+... .++++.+.++++ -.-.+.....|..-|..-.+..+++.++++|.+... -+...|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~------~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~ 90 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQL------VNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWK 90 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHH------hccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHH
Confidence 5889999999987776 999999999997 333445677889999999999999999999987652 3555555
Q ss_pred HHHH
Q 036356 210 AMIV 213 (462)
Q Consensus 210 ~li~ 213 (462)
.-+.
T Consensus 91 lYl~ 94 (656)
T KOG1914|consen 91 LYLS 94 (656)
T ss_pred HHHH
Confidence 5554
No 135
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.68 E-value=0.0012 Score=55.70 Aligned_cols=95 Identities=13% Similarity=0.173 Sum_probs=46.5
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHH-HhcCC--cchHHHHhccCCC---CC
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMY-AKCGS--VDLAPMFFDRTLD---KD 355 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~---~~ 355 (462)
.|...|..+...|...|++++|...|++.+ ...| +...+..+..++ ...|+ .++|.+++++..+ .+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-------~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~ 143 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQAL-------QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE 143 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence 355555555555666666666666665521 1222 334444444432 34444 2455555554442 23
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
...+..+...+...|++++|...|+++.+
T Consensus 144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 144 VTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555555555555555544
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.62 E-value=0.034 Score=51.70 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=78.2
Q ss_pred CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-
Q 036356 246 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN- 324 (462)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~- 324 (462)
..|.+++|+..+..+.+.. +-|...+....+.+.+.|+.++|.+.+++.+ ...|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-----------------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-------~l~P~~ 373 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-----------------PDNPYYLELAGDILLEANKAKEAIERLKKAL-------ALDPNS 373 (484)
T ss_pred HhcccchHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCc
Confidence 4566677777777666542 1344455555666777777777777776632 23344
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 401 (462)
....-.+.++|.+.|+..+|.++++... ..|...|..|..+|...|+..++..-.. ++|
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~ 435 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGY 435 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHH
Confidence 3444455666777777777777776654 2356667777777777777666554333 334
Q ss_pred HhcCChHHHHHHHHhC
Q 036356 402 ARAGYSNHAFKFIMNM 417 (462)
Q Consensus 402 ~~~g~~~~A~~~~~~m 417 (462)
...|++++|+..+...
T Consensus 436 ~~~G~~~~A~~~l~~A 451 (484)
T COG4783 436 ALAGRLEQAIIFLMRA 451 (484)
T ss_pred HhCCCHHHHHHHHHHH
Confidence 4566666666666555
No 137
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.00032 Score=65.32 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=95.4
Q ss_pred hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-C-----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 036356 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-K-----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ 392 (462)
Q Consensus 319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 392 (462)
.+...+......+++.+....+++.+..++.+... | -..|..++|+.|.+.|..+.++.+++.=..-|+.||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34555777788888888888888888888877663 2 22355699999999999999999999988889999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHcc
Q 036356 393 HYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRALLSAWKIP 436 (462)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~~ 436 (462)
+++.|++.+.+.|++..|.++..+| ....+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888 4445566666656666655
No 138
>PLN02789 farnesyltranstransferase
Probab=97.60 E-value=0.0073 Score=54.88 Aligned_cols=197 Identities=10% Similarity=-0.097 Sum_probs=138.3
Q ss_pred hccCCChhhHHHHHHhh--cCCC-cchHHHHHHhhcCcc-chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSNE-ENEYGTALDCSCDLE-FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR 137 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~ 137 (462)
+...++.++|+.+..++ ..|+ ..+|+.--.++...| +++++...++++.+... .+..+|
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-----------------knyqaW 109 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-----------------KNYQIW 109 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-----------------cchHHh
Confidence 66677889999999998 4444 446666666666667 68999999999998876 566678
Q ss_pred HHHHHHHHhCCCh--hHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHH
Q 036356 138 NAMISGYAKNGYA--EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMI 212 (462)
Q Consensus 138 ~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li 212 (462)
+.--..+.+.|+. ++++.+++++ .+. -+-+..+|+....++.+.|+++++++.++++.+ .|...|+...
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~ka-----l~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKI-----LSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRY 183 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHH-----HHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHH
Confidence 7665555666653 6778888886 222 234677888888888899999999999999875 4566677665
Q ss_pred HHHHhC----c-----hHHHHHHHhhhc---CCcchHHHHHHhhcC----ccchhhhHHHHHHHHHhCCCcchHHHHHHH
Q 036356 213 VGYGLH----E-----WSAFGSFDGLLS---NEENEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLELESDLLISLT 276 (462)
Q Consensus 213 ~~~~~~----~-----~~a~~~~~~m~~---~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 276 (462)
..+.+. + ++++....+... -|...|+-+...+.. .+...+|.+++.+..+.+.
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~----------- 252 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS----------- 252 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-----------
Confidence 554443 1 356666656655 566778777777766 2445668788877666432
Q ss_pred HhhcCCCCHhHHHHHHHHHHcC
Q 036356 277 AVCRYQPNVTLWNAMISGYAKN 298 (462)
Q Consensus 277 ~~~~~~~~~~~~~~li~~~~~~ 298 (462)
.+......+++.|+..
T Consensus 253 ------~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 253 ------NHVFALSDLLDLLCEG 268 (320)
T ss_pred ------CcHHHHHHHHHHHHhh
Confidence 4566677777777753
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.57 E-value=0.00054 Score=53.93 Aligned_cols=97 Identities=7% Similarity=-0.074 Sum_probs=71.5
Q ss_pred cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhh
Q 036356 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD 162 (462)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (462)
......+...+.+.|++++|...++.+...+. .+...|..+...+.+.|++++|..+|+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~-- 77 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----------------YNSRYWLGLAACCQMLKEYEEAIDAYALA-- 77 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34455666677778888888888888877665 56677777888888888888888888874
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 202 (462)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (462)
... .+.+..++..+...|...|++++|...|++..+
T Consensus 78 ---~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 78 ---AAL-DPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred ---Hhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 244566677777788888888888888877653
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.55 E-value=0.00057 Score=53.79 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=39.0
Q ss_pred HHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY 406 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 406 (462)
+...+...|++++|...|+...+ .+...|..+...+...|++++|..+++...+ ..|+ ...+..+...+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHcCC
Confidence 33344444444444444444321 1333444444445555555555555555444 2232 3444444445555555
Q ss_pred hHHHHHHHHhC
Q 036356 407 SNHAFKFIMNM 417 (462)
Q Consensus 407 ~~~A~~~~~~m 417 (462)
+++|.+.++..
T Consensus 101 ~~~A~~~~~~a 111 (135)
T TIGR02552 101 PESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 141
>PLN02789 farnesyltranstransferase
Probab=97.55 E-value=0.013 Score=53.36 Aligned_cols=125 Identities=12% Similarity=-0.047 Sum_probs=74.7
Q ss_pred hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC-ChhHHHHHHHHhhhhhhhhcCC
Q 036356 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG-YAEEAVKLFPKWMDYYIGKSEY 170 (462)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~ 170 (462)
.+...+..++|..+.+++++..+ -+..+|+.--..+...| ++++++..++++ ... -
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-----------------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~-----i~~-n 102 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-----------------GNYTVWHFRRLCLEALDADLEEELDFAEDV-----AED-N 102 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-----------------hhHHHHHHHHHHHHHcchhHHHHHHHHHHH-----HHH-C
Confidence 34455678888888888887754 34455665555555666 578888888886 222 2
Q ss_pred CCCchHHHHHHHHHHhcCCc--ccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCcc
Q 036356 171 RNNVIVNTVLIDMYAKCGSV--DLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE 248 (462)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~ 248 (462)
+-+..+|+..-..+.+.|+. +++..+++++.+.|.. |..+|+....++.+.|
T Consensus 103 pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk--------------------------Ny~AW~~R~w~l~~l~ 156 (320)
T PLN02789 103 PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK--------------------------NYHAWSHRQWVLRTLG 156 (320)
T ss_pred CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHhh
Confidence 23344555444444444542 3445555555443332 2334444445555667
Q ss_pred chhhhHHHHHHHHHhCC
Q 036356 249 FLEQGKIVHGFMIKLGL 265 (462)
Q Consensus 249 ~~~~a~~~~~~~~~~~~ 265 (462)
+++++++.++.+++.+.
T Consensus 157 ~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 157 GWEDELEYCHQLLEEDV 173 (320)
T ss_pred hHHHHHHHHHHHHHHCC
Confidence 78888888888887764
No 142
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0018 Score=47.34 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHH
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 365 (462)
+-...|..+...+++.....+|+. +++.|+ .|++.+|+.++.+.+++.--.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqs-----lkRN~i~lPsv~~Yn~VL~Si~~R~lD~----------------------- 78 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQS-----LKRNGITLPSVELYNKVLKSIAKRELDS----------------------- 78 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHH-----HHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------
Confidence 344556677777999999999998 889999 999999999998887743211
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 404 (462)
..-.++.-..+.+++.|...+++|+..||+.++..+.+.
T Consensus 79 ~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 79 EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 112334566788999999999999999999999988763
No 143
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.53 E-value=0.0056 Score=61.56 Aligned_cols=141 Identities=9% Similarity=0.021 Sum_probs=114.8
Q ss_pred CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Ccc
Q 036356 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVV 357 (462)
Q Consensus 282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~ 357 (462)
..++..+-.|.....+.|+.++|+.+++.. ..+.|+ ......+..++.+.+++++|....++..+ | +..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~-------~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGI-------HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHH-------HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 356888888999999999999999999884 346676 55667788899999999999999998875 4 334
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLS 431 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~ 431 (462)
....+..++...|++++|..+|++... -.|+ ..++..+..++-+.|+.++|...|+.. ...|...-|+.++.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 556777888999999999999999998 4455 788999999999999999999999998 34455566555443
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.019 Score=49.01 Aligned_cols=238 Identities=12% Similarity=0.036 Sum_probs=137.3
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE- 219 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~- 219 (462)
++-+-=.|++..++..-+.. .+.+.+...-.-+-++|...|+......-...-..+...... ++..|....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~-------~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr-~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKF-------SSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVR-LLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhh-------ccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHH-HHHHHhhCcc
Confidence 34444557777777665553 111122222233566777777766544333322222222111 122222222
Q ss_pred ---hHHHHHHHhhhcC----CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356 220 ---WSAFGSFDGLLSN----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292 (462)
Q Consensus 220 ---~~a~~~~~~m~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li 292 (462)
+...++.+.+..+ +......-...|++.+++++|++..... -+......=.
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----------------------~~lE~~Al~V 144 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----------------------ENLEAAALNV 144 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----------------------chHHHHHHHH
Confidence 3334444444442 2222333445688999999999987752 1222222223
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cCCcchHHHHhccCCC---CCccchHHHHHH
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD---KDVVMRSAMTVG 365 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 365 (462)
..+.+..+.+-|.+.+++|. .- -+..|.+-|..++.+ .+.+.+|.-+|++|.+ |+..+.+....+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq-----~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQ-----QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHH
Confidence 44667788999999998843 21 244566666666654 4568999999999986 566666777888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh-HHHHHHHHhC
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYS-NHAFKFIMNM 417 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 417 (462)
+...|++++|..++++...+.-. +..+..-++-.-.-.|.. +-..+.+...
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 88899999999999999985322 244544444444444544 3344455555
No 145
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.50 E-value=0.016 Score=53.05 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=111.0
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
..+|...+++-.+...++.|..+|-...+.|+. .+++..++++|..++ .|+..-|.++|+-=
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~---------------~h~vyi~~A~~E~~~-~~d~~ta~~ifelG-- 458 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV---------------GHHVYIYCAFIEYYA-TGDRATAYNIFELG-- 458 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC---------------CcceeeeHHHHHHHh-cCCcchHHHHHHHH--
Confidence 456777888888888899999999999999863 688999999998776 56778888888752
Q ss_pred HHHHhhCCCCchhH-HHHHHHHHHhcCCcchHHHHhccCCC---CC--ccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356 314 YYIGKSEYRNNVIV-NTVLIDMYAKCGSVDLAPMFFDRTLD---KD--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387 (462)
Q Consensus 314 ~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 387 (462)
| ...||... -+..+.-+...++-+.|..+|+...+ .+ ...|..+|.--..-|+...+..+=++|.. +
T Consensus 459 --l---~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~ 531 (660)
T COG5107 459 --L---LKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--L 531 (660)
T ss_pred --H---HhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--H
Confidence 1 12344433 35566777888999999999996653 23 45788899888889999988888888888 7
Q ss_pred CCCHhHHHHHHHHHHhc
Q 036356 388 EPRHQHYARVVDLLARA 404 (462)
Q Consensus 388 ~p~~~~~~~li~~~~~~ 404 (462)
-|...+.......|.-.
T Consensus 532 ~pQen~~evF~Sry~ik 548 (660)
T COG5107 532 VPQENLIEVFTSRYAIK 548 (660)
T ss_pred cCcHhHHHHHHHHHhhh
Confidence 77777766666666543
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00026 Score=50.37 Aligned_cols=80 Identities=9% Similarity=0.073 Sum_probs=53.0
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHH
Q 036356 369 HGLGEEGWVLFHHIRKHGI-EPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRL-SVRRALLSAWKIPMQQWENMLQT 446 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~ 446 (462)
.|+++.|+.+++++.+..- .|+...+..+..+|.+.|++++|..+++..+..|+. .....+..++...|++++|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4678888888888887422 123445555788888888888888888775333332 44445677888888888888776
Q ss_pred Hh
Q 036356 447 IR 448 (462)
Q Consensus 447 ~~ 448 (462)
.+
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 147
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.1 Score=47.46 Aligned_cols=140 Identities=12% Similarity=-0.017 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHH
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 365 (462)
.+.+..|.-+...|+...|.++-.+ -.+ |+...|-.-+.+|+..++|++-.++-.. +..+.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~--------Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE--------FKV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH--------cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHH
Confidence 3455667777788988888888655 233 7888899999999999999988887654 4567889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQ 445 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 445 (462)
|.+.|+..+|..+..+ .++..-+..|.+.|++.+|.+.--+. .|...+..+.+-+-..+. ...+..
T Consensus 247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~~~~~-~~~~~~ 312 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCPGNND-QLIADK 312 (319)
T ss_pred HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCCCCCh-HHHHHH
Confidence 9999999999888877 22266778889999999998876665 366666666655443322 222234
Q ss_pred HHhhh
Q 036356 446 TIRGI 450 (462)
Q Consensus 446 ~~~~~ 450 (462)
+.+|+
T Consensus 313 i~~~~ 317 (319)
T PF04840_consen 313 IEQML 317 (319)
T ss_pred HHHHH
Confidence 55554
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.0021 Score=47.00 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcC--------ChHHHHHHHHhC---CCCCCHHHHH
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGI-EPRHQHYARVVDLLARAG--------YSNHAFKFIMNM---PIELRLSVRR 427 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m---~~~p~~~~~~ 427 (462)
..-|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++.. +.-+.+.+++.| +++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456677778999999999999999999 999999999999988764 244567778888 8999999999
Q ss_pred HHHHHHHc
Q 036356 428 ALLSAWKI 435 (462)
Q Consensus 428 ~l~~~~~~ 435 (462)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99998775
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.37 E-value=0.0034 Score=50.08 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=21.7
Q ss_pred HHHHHhcCCcchHHHHhccCCCC--CccchHHHHHHHHhcCChHHHHHHHH
Q 036356 332 IDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAMTVGYGLHGLGEEGWVLFH 380 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~ 380 (462)
...+...|++++|...++....+ ....+......|.+.|++++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444455555555555443321 11223334444555555555555444
No 150
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.023 Score=53.25 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=82.1
Q ss_pred HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC
Q 036356 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 170 (462)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 170 (462)
++....|+++.|...|.+.+...+ +|.+.|+.=..+|+..|++++|++=-.+ ...+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-----------------~nhvlySnrsaa~a~~~~~~~al~da~k-------~~~l 65 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-----------------TNHVLYSNRSAAYASLGSYEKALKDATK-------TRRL 65 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-----------------CccchhcchHHHHHHHhhHHHHHHHHHH-------HHhc
Confidence 456788999999999999998887 7999999999999999999999876655 3456
Q ss_pred CCC-chHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHHHHHHH
Q 036356 171 RNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMIVGY 215 (462)
Q Consensus 171 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~ 215 (462)
.|+ ..-|+-.-.++.-.|++++|+.-|.+-.+. |...++.+..++
T Consensus 66 ~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 66 NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 666 568888999999999999999999987643 444555555555
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.003 Score=48.21 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCcchHHHHhccCCC--CCc----cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHHH
Q 036356 328 NTVLIDMYAKCGSVDLAPMFFDRTLD--KDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYARV 397 (462)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l 397 (462)
+..+...+.+.|++++|...|+.+.+ |+. ..+..+...+.+.|+++.|...|+.+... .|+ ...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHHH
Confidence 33444455555555555555555542 221 23334555555555555555555555542 122 2344445
Q ss_pred HHHHHhcCChHHHHHHHHhC
Q 036356 398 VDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 398 i~~~~~~g~~~~A~~~~~~m 417 (462)
..++.+.|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 55555555555555555554
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.31 E-value=0.0029 Score=45.53 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=58.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI 435 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 435 (462)
|..+...+...|++++|...+++..+ ..|+ ...+..+...+...|++++|.+.++.. ...| +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 44556666677777777777777766 3444 355666677777777777777777765 3233 33466677777777
Q ss_pred cCChHHHHHHHHhhh
Q 036356 436 PMQQWENMLQTIRGI 450 (462)
Q Consensus 436 ~~~~~~a~~~~~~~~ 450 (462)
.|+.++|...+.+..
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 777777776655443
No 153
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.00088 Score=55.33 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=80.6
Q ss_pred HHHHHHhh--cCCCcchHHHHHHhhc-----CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH
Q 036356 71 AFGSFDGL--LSNEENEYGTALDCSC-----DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG 143 (462)
Q Consensus 71 A~~~~~~m--~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~ 143 (462)
-.+.|+.. ...|-.+|..+++.+. +.|.++-....+..|.+.|+ ..|..+|+.|++.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv----------------~kDL~~Y~~LLDv 96 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV----------------EKDLEVYKALLDV 96 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC----------------cccHHHHHHHHHh
Confidence 34555555 6678888999988885 45778888899999999999 8999999999988
Q ss_pred HHhCC----------------ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC
Q 036356 144 YAKNG----------------YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189 (462)
Q Consensus 144 ~~~~g----------------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 189 (462)
+=+.. +-+-|++++++| ...|+.||..++..+++.+++.+.
T Consensus 97 FPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qM-----E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 97 FPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQM-----ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CCCCCcccccHHHHHhccCcHHHHHHHHHHHHH-----HHcCCCCcHHHHHHHHHHhccccH
Confidence 77642 355689999999 899999999999999999977654
No 154
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.0017 Score=43.95 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=50.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036356 367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALL 430 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~ 430 (462)
...|++++|.++|+++.. ..|+ ...+..+..+|.+.|++++|.++++.+ ...|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 467899999999999988 6674 777888999999999999999999999 6667765555544
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.25 E-value=0.0015 Score=60.95 Aligned_cols=100 Identities=12% Similarity=0.008 Sum_probs=47.8
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
+......+++.+....+++.+..++-+.....- .. .--..|..++++.|.+.|..+.++.+++.=
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~--~~------------~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~- 129 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPN--CS------------YLLPSTHHALVRQCLELGAEDELLELLKNR- 129 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcc--cc------------cccCccHHHHHHHHHhcCCHHHHHHHHhCh-
Confidence 344445555555555555555555544443311 00 112233345555555555555555555543
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhcc
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (462)
...|+-||..++|.||+.+.+.|++..|.++...|
T Consensus 130 ----~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 130 ----LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEM 164 (429)
T ss_pred ----hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHH
Confidence 44555555555555555555555555555554444
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.15 Score=46.37 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGY 406 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 406 (462)
+.+.-|.-+...|+...|.++-.+..-||..-|-.-+.+++..+++++-.++-.. .- .+.-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 4445566777889999999999999889999999999999999999987776432 22 34789999999999999
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 407 SNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 407 ~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
..+|..++.+++ +..-+..|.+.|++.+|.....+
T Consensus 253 ~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999853 25556777888888888766544
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.24 E-value=0.0028 Score=48.36 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC--CCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC----ccc
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----VVM 358 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 358 (462)
++......+.+.|++++|.+.|...+ .... ......+..+..++.+.|+++.|...|+.+.. |+ ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFL-----KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-----HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 34445555555566666666655532 1110 11122334455555555555556555555442 22 123
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
+..+..++...|+.++|...++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 44445555555555666655555555
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0019 Score=55.94 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=56.9
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCCCC---ccchHHHHHHHHhcC
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VVMRSAMTVGYGLHG 370 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~ 370 (462)
+.+.+++++|+..|.+.| .+.| |.+.|..=..+|++.|.++.|++--+....-| ..+|..|-.+|...|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI-------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI-------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHhhhHHHHHHHHHHHH-------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 666666777777666643 2444 34444445566666676666666655554322 345666666666666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036356 371 LGEEGWVLFHHIRKHGIEPRHQHYARVV 398 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li 398 (462)
++++|++.|++..+ +.|+-.+|..=+
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 77777666666666 666665554433
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.14 E-value=0.0018 Score=46.66 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=44.7
Q ss_pred HHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY 406 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 406 (462)
+...+...|++++|...++...+ | +...+..+...+...+++++|.+.++.... ..|+ ..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHHHh
Confidence 34444445555555555554432 1 223344455555555666666666666555 2233 2455555666666666
Q ss_pred hHHHHHHHHhC
Q 036356 407 SNHAFKFIMNM 417 (462)
Q Consensus 407 ~~~A~~~~~~m 417 (462)
+++|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.039 Score=49.55 Aligned_cols=125 Identities=10% Similarity=0.089 Sum_probs=68.0
Q ss_pred HHHHcC-CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----CCcc------chHH
Q 036356 293 SGYAKN-GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----KDVV------MRSA 361 (462)
Q Consensus 293 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~------~~~~ 361 (462)
..|-+. |++++|.+.|.+..+-+-......--...+..+...+.+.|++++|..+|++... .+.. .|-.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 345555 6777777777776543222221111244556667778888888888888876531 1111 1222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HhHHHHHHHHHHhc--CChHHHHHHHHhC
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKH--GIEPR--HQHYARVVDLLARA--GYSNHAFKFIMNM 417 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~li~~~~~~--g~~~~A~~~~~~m 417 (462)
.+-++...||+..|.+.+++.... ++..+ ......|+.+|-.. ..+++|+.-|+.+
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 344556678888888888888764 22222 34455666666442 3455566666665
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.10 E-value=0.0036 Score=56.02 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=102.9
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 314 (462)
.+|..+++..-+.+..+.|+.+|....+.+.. ..++....+++. |...++.+.|..+|+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~---------------~~~vy~~~A~~E-~~~~~d~~~A~~Ife~gl-- 63 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC---------------TYHVYVAYALME-YYCNKDPKRARKIFERGL-- 63 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHH-HHTCS-HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHH-HHhCCCHHHHHHHHHHHH--
Confidence 36778888888889999999999999865421 233333333333 333567777999999853
Q ss_pred HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388 (462)
Q Consensus 315 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 388 (462)
+. +..+...|...++.+.+.|+.+.|..+|++... + -...|...+.-=.+.|+.+.+.++.+++.+ ..
T Consensus 64 --k~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~ 137 (280)
T PF05843_consen 64 --KK--FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LF 137 (280)
T ss_dssp --HH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HT
T ss_pred --HH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hh
Confidence 22 445677888889999999999999999998764 2 234899999999999999999999999998 67
Q ss_pred CCHhHHHHHHHHH
Q 036356 389 PRHQHYARVVDLL 401 (462)
Q Consensus 389 p~~~~~~~li~~~ 401 (462)
|+......+++-|
T Consensus 138 ~~~~~~~~f~~ry 150 (280)
T PF05843_consen 138 PEDNSLELFSDRY 150 (280)
T ss_dssp TTS-HHHHHHCCT
T ss_pred hhhhHHHHHHHHh
Confidence 7766666666554
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.09 E-value=0.00043 Score=49.24 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCChhhHHHHHHhh--cCC---CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356 65 SRTEWSAFGSFDGL--LSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA 139 (462)
Q Consensus 65 ~~~~~~A~~~~~~m--~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~ 139 (462)
+|+++.|+.+|+++ ..| +...+..+..++.+.|++++|..+++. .+.+. .+....-.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----------------~~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----------------SNPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----------------CHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----------------CCHHHHHH
Confidence 58899999999999 444 344566688999999999999999998 43333 23344445
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 036356 140 MISGYAKNGYAEEAVKLFPK 159 (462)
Q Consensus 140 li~~~~~~g~~~~a~~~~~~ 159 (462)
+..++.+.|++++|++.|++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhc
Confidence 67889999999999999875
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.036 Score=46.99 Aligned_cols=143 Identities=11% Similarity=0.095 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH-HHHHHhcCCcchHHHHhccCCCC---CccchHHHH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL-IDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMT 363 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 363 (462)
|..++-+....|+.+.|...++. +.. .+ |...-...| .--+...|.+++|.++++...+. |.++|-.=+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~-----L~~-~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQ-----LRD-RF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHH-----HHH-hC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 44445555556666666666655 222 12 222111111 11133355666666666666532 333444333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCC
Q 036356 364 VGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQ 438 (462)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~ 438 (462)
-..-..|+.-+|++-+.+..+ -+..|...|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+...|.
T Consensus 128 Ailka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 334444555555555555554 13334666666666666666666666666666 2333 44444555555555543
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.02 E-value=0.0086 Score=49.66 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=73.2
Q ss_pred CCcchHHHHHHhhc-----CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH--cCCChhHH
Q 036356 232 NEENEYGTALDCSC-----DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA--KNGYAEEA 304 (462)
Q Consensus 232 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~--~~~~~~~a 304 (462)
.+..+|..++..+. +.|.++-....+..|.+-|+.-|..+|+.|++.+ +.+..+-.+++.+-. .-.+-+-|
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvF--PKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVF--PKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhC--CCCCcccccHHHHHhccCcHHHHHH
Confidence 45555666665554 5677888888899999999999999999998883 112222222222211 13456778
Q ss_pred HHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCC
Q 036356 305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 340 (462)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 340 (462)
++++++ |...|+.||..++..+++.+++.+.
T Consensus 123 i~lL~q-----ME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQ-----MENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-----HHHcCCCCcHHHHHHHHHHhccccH
Confidence 899998 9999999999999999999988664
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.99 E-value=0.004 Score=57.84 Aligned_cols=90 Identities=11% Similarity=-0.022 Sum_probs=51.0
Q ss_pred HHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356 335 YAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA 410 (462)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 410 (462)
+...|+++.|...|++..+ .+...|..+..+|...|++++|+..+++... +.|+ ...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3344555555555555442 2334455555666666666666666666666 4454 45566666666666666666
Q ss_pred HHHHHhC-CCCCCHHHH
Q 036356 411 FKFIMNM-PIELRLSVR 426 (462)
Q Consensus 411 ~~~~~~m-~~~p~~~~~ 426 (462)
+..+++. .+.|+....
T Consensus 90 ~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 90 KAALEKGASLAPGDSRF 106 (356)
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 6666665 444444333
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.97 E-value=0.0062 Score=54.72 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=108.1
Q ss_pred HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh
Q 036356 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319 (462)
Q Consensus 240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 319 (462)
....|...+++++|...|....+.....+.. ..-...|......|.+. ++++|.+.+.+.+.-++...
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-----------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDK-----------FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H-----------HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 3455566677777776666554322110000 01122344444444444 78888888877665433222
Q ss_pred CCCCchhHHHHHHHHHHhc-CCcchHHHHhccCCC----CC-----ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC-
Q 036356 320 EYRNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLD----KD-----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE- 388 (462)
Q Consensus 320 ~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~- 388 (462)
...--...+..+...|... |+++.|...|++..+ .+ ..++..+...+.+.|++++|.++|++....-..
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 2222245666777788887 899988888887652 11 235567888899999999999999998875322
Q ss_pred ----CCHh-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHc
Q 036356 389 ----PRHQ-HYARVVDLLARAGYSNHAFKFIMNM-PIELR------LSVRRALLSAWKI 435 (462)
Q Consensus 389 ----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~l~~~~~~ 435 (462)
++.. .|...+-.+...|++..|.+.+++. ...|+ ......|+.++-.
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 2222 3334455667789999999999987 33332 3356677888654
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.96 E-value=0.46 Score=47.82 Aligned_cols=215 Identities=12% Similarity=0.113 Sum_probs=135.7
Q ss_pred cCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH--HHhCCChhHHHHHHHHhhhhhhhhcCCC
Q 036356 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEYR 171 (462)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 171 (462)
...++++.|.+-...+.+. .||.. |..++.+ +.+.|+.++|..+++.. ...+..
T Consensus 20 ld~~qfkkal~~~~kllkk------------------~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~-----~~~~~~ 75 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK------------------HPNAL-YAKVLKALSLFRLGKGDEALKLLEAL-----YGLKGT 75 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH------------------CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhh-----ccCCCC
Confidence 3557889999999988876 45553 4444555 46899999999999885 233322
Q ss_pred CCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHHHhCc------hHHHHHHHhhhcCCcchHHHHHHh
Q 036356 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHE------WSAFGSFDGLLSNEENEYGTALDC 243 (462)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~------~~a~~~~~~m~~~~~~~~~~ll~~ 243 (462)
|..|...+-.+|.+.++.++|..++++..+ |+......+..+|++.+ ..|+++++... .+.+.|.++++.
T Consensus 76 -D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Sl 153 (932)
T KOG2053|consen 76 -DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISL 153 (932)
T ss_pred -chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHH
Confidence 888999999999999999999999999875 55555556667777766 66777777442 344555555555
Q ss_pred hcCcc-c---------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 244 SCDLE-F---------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 244 ~~~~~-~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
..+.. . +.-|.+.++.+.+.+-.. -+..-..--...+-..|++++|++++...
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~---------------~s~aE~~Lyl~iL~~~~k~~eal~~l~~~-- 216 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKI---------------ESEAEIILYLLILELQGKYQEALEFLAIT-- 216 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCcc---------------chHHHHHHHHHHHHhcccHHHHHHHHHHH--
Confidence 43221 1 223444555555443110 11111112223455678899999998542
Q ss_pred HHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353 (462)
Q Consensus 314 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 353 (462)
..+.-...+...-+.-++.+...+++.+..++-.++..
T Consensus 217 --la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 217 --LAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred --HHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 22223333444555667778888888877666665553
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.94 E-value=0.0035 Score=49.41 Aligned_cols=82 Identities=11% Similarity=-0.024 Sum_probs=71.8
Q ss_pred hccCCChhhHHHHHHhh--cCC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|..+|+.. ..| +..-|-.|.-++-..|++++|...|......++ -|+..+-
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----------------ddp~~~~ 107 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----------------DAPQAPW 107 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCchHHH
Confidence 88999999999999999 445 455666777777789999999999999999876 6788888
Q ss_pred HHHHHHHhCCChhHHHHHHHHh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m 160 (462)
.+..++...|+.+.|.+.|+.-
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8999999999999999999985
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.93 E-value=0.55 Score=47.31 Aligned_cols=210 Identities=11% Similarity=0.030 Sum_probs=126.2
Q ss_pred hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceee---hhh-hccCCChhhHHHHHHhh---cCCCcchHHHHHHh
Q 036356 20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFL---DLY-HLWSRTEWSAFGSFDGL---LSNEENEYGTALDC 92 (462)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~ 92 (462)
...++++..|.+-.+.+.+.. |+.... .++ ..+.|+.++|..+++.. ...|..|...+-.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~------------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH------------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC------------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 345677788888888887765 455444 444 99999999999999988 44477899999999
Q ss_pred hcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC
Q 036356 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 172 (462)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 172 (462)
|...+..++|..+|++..+.. |+..-...+..+|++.+++.+-.+.--+| -...+-
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~------------------P~eell~~lFmayvR~~~yk~qQkaa~~L------yK~~pk 142 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKY------------------PSEELLYHLFMAYVREKSYKKQQKAALQL------YKNFPK 142 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhC------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCc
Confidence 999999999999999998774 55555666677778777766544433332 112344
Q ss_pred CchHHHHHHHHHHhcC-Ccc---------cHHHHhhccCCCCc--ch-HHHHH--HHHHhCc--hHHHHHHHhhhc----
Q 036356 173 NVIVNTVLIDMYAKCG-SVD---------LAPMFFDRTLDKDV--VM-RSAMI--VGYGLHE--WSAFGSFDGLLS---- 231 (462)
Q Consensus 173 ~~~~~~~li~~~~~~g-~~~---------~a~~~~~~m~~~~~--~~-~~~li--~~~~~~~--~~a~~~~~~m~~---- 231 (462)
+...+-++++.+...- ..+ -|.+.++.+.+.+. .+ -...+ ..+...+ ++|.+++..-..
T Consensus 143 ~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~ 222 (932)
T KOG2053|consen 143 RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT 222 (932)
T ss_pred ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence 4555555666555432 222 23334444433221 11 01111 1222233 666666632222
Q ss_pred -CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCC
Q 036356 232 -NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265 (462)
Q Consensus 232 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 265 (462)
.+...-+.-+..+...+++.+..++-.++...|.
T Consensus 223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 2333333455555666666666666666666554
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.073 Score=51.21 Aligned_cols=264 Identities=12% Similarity=0.006 Sum_probs=129.2
Q ss_pred cCCCcchHHHHHHhhcCccchhhHHHH---------HHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCC
Q 036356 79 LSNEENEYGTALDCSCDLEFLEQGKIV---------HGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY 149 (462)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~---------~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~ 149 (462)
+.+.+..+.+-+..+...|.+++|.++ ++.+.... .+.-.++.-=.+|.+-.+
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A------------------LeAL~f~~ARkAY~rVRd 613 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA------------------LEALDFETARKAYIRVRD 613 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHHH------------------HhhhhhHHHHHHHHHHhc
Confidence 455566677777788888888888765 22222221 233444555556665554
Q ss_pred hh--HHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHH
Q 036356 150 AE--EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFD 227 (462)
Q Consensus 150 ~~--~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~ 227 (462)
.. +.+.-+++| ++.|-.|+... +...++-.|.+.+|-++|.+--.. ..|+++|.
T Consensus 614 l~~L~li~EL~~~-----k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e----------------nRAlEmyT 669 (1081)
T KOG1538|consen 614 LRYLELISELEER-----KKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE----------------NRALEMYT 669 (1081)
T ss_pred cHHHHHHHHHHHH-----HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch----------------hhHHHHHH
Confidence 33 233334454 77787787755 456677788999998888763321 23444443
Q ss_pred hhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHH
Q 036356 228 GLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKL 307 (462)
Q Consensus 228 ~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 307 (462)
.|.- |. ...-+...|.-++-..+...-.+-. .|+.--.+-...+...|+.++|..+
T Consensus 670 DlRM-----FD-~aQE~~~~g~~~eKKmL~RKRA~WA------------------r~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 670 DLRM-----FD-YAQEFLGSGDPKEKKMLIRKRADWA------------------RNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred HHHH-----HH-HHHHHhhcCChHHHHHHHHHHHHHh------------------hhcCCcHHHHHHhhcccchhhhhhh
Confidence 3310 00 0111112222222111111100000 0111111223345556777776666
Q ss_pred hhHHH-HHHHHhhCC---CCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356 308 FPKWM-DYYIGKSEY---RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383 (462)
Q Consensus 308 ~~~~~-~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 383 (462)
..+.= .+.+.+-+- ..+..+...+..-+.+...+-.|.++|.+|-+ ..+++......+++.+|..+-++..
T Consensus 726 ~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 726 CGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCc
Confidence 52210 000111111 12233444444444555666677777776643 2355666677777777777766665
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 384 KHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 384 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+ +.||.. ....+-++...++++|.+.|.+.
T Consensus 801 e--~~~dVy--~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 801 E--FKDDVY--MPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred c--cccccc--chHHHHhhhhhhHHHHHHHHHHh
Confidence 5 555532 22233344555555555555555
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.87 E-value=0.037 Score=43.76 Aligned_cols=86 Identities=9% Similarity=-0.072 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 036356 330 VLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG 405 (462)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 405 (462)
.+...+...|++++|.++|+-.. +| +..-|-.|.-++-..|++++|+..+..... +.|| ...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 34445566777888887777655 33 444556667777777778888888877777 5565 667777777777778
Q ss_pred ChHHHHHHHHhC
Q 036356 406 YSNHAFKFIMNM 417 (462)
Q Consensus 406 ~~~~A~~~~~~m 417 (462)
+.+.|.+.|+..
T Consensus 118 ~~~~A~~aF~~A 129 (157)
T PRK15363 118 NVCYAIKALKAV 129 (157)
T ss_pred CHHHHHHHHHHH
Confidence 888777777765
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.81 E-value=0.014 Score=52.24 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-CCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHH
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSA 361 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 361 (462)
.+|..++...-+.+..+.|..+|.+. .+. ....++....+++. |...++.+.|.++|+...+ .+...|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-----~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA-----RKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-----HcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 46778888888888888888888883 222 22333333333332 2224556668888887663 46667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----QHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLS 431 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 431 (462)
.+.-+.+.++.+.|..+|++.... -|.. ..|...++-=.+.|+++.+.++.+++ ..-|+......+..
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 788888888888888888887764 3333 47777777777888888888887777 33444444444443
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.77 E-value=0.0039 Score=41.64 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+...+...|++++|.+.|+...+ ..|+ ...+..+..++...|++++|...+++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556677777777777777777 3364 566677777777777777777777765
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.75 E-value=0.038 Score=41.96 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=56.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR----LSVRRALLSAWK 434 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~ 434 (462)
+..++-..|+.++|+.++++....|.... ...+-.+...+...|++++|..++++. .-.|+ ......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455667777778888877777776655 345666667777778888887777776 22233 223333445666
Q ss_pred ccCChHHHHHHHHhhh
Q 036356 435 IPMQQWENMLQTIRGI 450 (462)
Q Consensus 435 ~~~~~~~a~~~~~~~~ 450 (462)
..|+.++|+..+.+.+
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777665543
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.73 E-value=0.014 Score=48.08 Aligned_cols=85 Identities=16% Similarity=0.023 Sum_probs=59.0
Q ss_pred chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC--eeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
..+..+...+...|++++|...|++..+... .+. ...+..+...+.+.|++++|...+++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a- 98 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEE----------------DPNDRSYILYNMGIIYASNGEHDKALEYYHQA- 98 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh----------------ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 3566677777788888999988888877654 222 356777888888889999999888885
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCc
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 190 (462)
... .+-+...+..+...|...|+.
T Consensus 99 ----l~~-~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 99 ----LEL-NPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred ----HHh-CcccHHHHHHHHHHHHHcCCh
Confidence 222 122355566666777776664
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.70 E-value=0.026 Score=46.46 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=49.8
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC--chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cccc
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVM 358 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~ 358 (462)
....+..+...+...|++++|...|++.+ .....+ ....+..+...+.+.|++++|...+++..+ | +...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEAL-----KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 34456667777778888888888888743 222111 134566666667777777777777766542 2 3334
Q ss_pred hHHHHHHHHhcCC
Q 036356 359 RSAMTVGYGLHGL 371 (462)
Q Consensus 359 ~~~li~~~~~~~~ 371 (462)
+..+...+...|+
T Consensus 109 ~~~lg~~~~~~g~ 121 (172)
T PRK02603 109 LNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHcCC
Confidence 4455555555554
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.69 E-value=0.036 Score=54.02 Aligned_cols=137 Identities=7% Similarity=-0.026 Sum_probs=93.6
Q ss_pred CCCHhHHHHHHHHHHcCC-----ChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcC--------CcchHHHH
Q 036356 282 QPNVTLWNAMISGYAKNG-----YAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCG--------SVDLAPMF 347 (462)
Q Consensus 282 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--------~~~~A~~~ 347 (462)
+.|...|...+.+..... ..+.|..+|++.+ ...|+ ...|..+..+|.... ++..+.+.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai-------~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL-------KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 467788888888755432 3678899998843 34555 344444433333221 12233333
Q ss_pred hccCC-----CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036356 348 FDRTL-----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL 421 (462)
Q Consensus 348 ~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 421 (462)
.+... ..+...|..+.-.....|++++|...+++..+ +.|+...|..+...+...|+.++|.+.+++. .+.|
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33321 22445677776677778999999999999999 6688889999999999999999999999887 5556
Q ss_pred CHHHHH
Q 036356 422 RLSVRR 427 (462)
Q Consensus 422 ~~~~~~ 427 (462)
...+|.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 555543
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.68 E-value=0.14 Score=41.45 Aligned_cols=129 Identities=13% Similarity=0.079 Sum_probs=100.3
Q ss_pred CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C---Cc
Q 036356 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K---DV 356 (462)
Q Consensus 282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~ 356 (462)
-|++..--.+..++.+.|+..+|...|.+.+ ..-+.-|....-.+.++....++...|...++++.+ | ..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 4778888888999999999999999999842 223445677777788888889999999999988764 2 33
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.+--.+.+.|...|+++.|+.-|+...+ .-|+...-......+.++|+.++|..-+..+
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3445677889999999999999999998 7788666666667778899888876644443
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.62 E-value=0.015 Score=47.64 Aligned_cols=85 Identities=11% Similarity=-0.023 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCcchHHHHhccCC--CCC----ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 036356 328 NTVLIDMYAKCGSVDLAPMFFDRTL--DKD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL 400 (462)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 400 (462)
|..+...+...|++++|...|++.. .++ ..+|..+...+...|++++|.+.++.... +.|+ ..++..+...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~i 115 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 3334444444455555554444432 111 12455555566666666666666666555 3343 3344444444
Q ss_pred HH-------hcCChHHHHHHH
Q 036356 401 LA-------RAGYSNHAFKFI 414 (462)
Q Consensus 401 ~~-------~~g~~~~A~~~~ 414 (462)
+. +.|++++|...+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHH
Confidence 44 556655444433
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.018 Score=50.08 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=86.2
Q ss_pred HHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH
Q 036356 334 MYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH 409 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 409 (462)
-+.+.+++++|...|.+..+ .|.+-|..=..+|++.|.++.|++-.+..+. +.|. ..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 35678899999999998773 4777788889999999999999999999988 8888 7899999999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356 410 AFKFIMNM-PIELRLSVRRALLSAWK 434 (462)
Q Consensus 410 A~~~~~~m-~~~p~~~~~~~l~~~~~ 434 (462)
|++.|++. .+.|+..+|..=++...
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 99999998 89999888876665543
No 181
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.54 E-value=0.024 Score=43.51 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 404 (462)
..++..+|.++++.|+++....+.+..=..|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445666666666666666666665543211100 0000000 112235778888899999999999
Q ss_pred CChHHHHHHHHhC----CCCCCHHHHHHHHHHHHcc
Q 036356 405 GYSNHAFKFIMNM----PIELRLSVRRALLSAWKIP 436 (462)
Q Consensus 405 g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~ 436 (462)
|++..|+++++.. +++-+..+|..|++=+...
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999988877 6666788888887654444
No 182
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.54 E-value=0.0068 Score=48.38 Aligned_cols=77 Identities=8% Similarity=0.044 Sum_probs=59.4
Q ss_pred hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164 (462)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (462)
+...++..+...|+++.|..+.+.+....+ -|...|..+|.+|...|+...|.+.|+.+....
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-----------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-----------------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-----------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 456677777889999999999999999876 788999999999999999999999999986555
Q ss_pred hhhcCCCCCchHHH
Q 036356 165 IGKSEYRNNVIVNT 178 (462)
Q Consensus 165 ~~~~~~~~~~~~~~ 178 (462)
..+.|+.|+..+-.
T Consensus 127 ~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 127 REELGIEPSPETRA 140 (146)
T ss_dssp HHHHS----HHHHH
T ss_pred HHHhCcCcCHHHHH
Confidence 56789999876643
No 183
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.50 E-value=0.032 Score=51.91 Aligned_cols=87 Identities=9% Similarity=-0.067 Sum_probs=74.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCCh
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQ 439 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 439 (462)
...+...|++++|++.|++..+ ..|+ ...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4556678999999999999998 6676 678888889999999999999999998 5556 566888999999999999
Q ss_pred HHHHHHHHhhhh
Q 036356 440 WENMLQTIRGID 451 (462)
Q Consensus 440 ~~a~~~~~~~~~ 451 (462)
++|+..+.+.+.
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.48 E-value=0.025 Score=46.33 Aligned_cols=93 Identities=14% Similarity=-0.004 Sum_probs=67.0
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC--chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccch
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMR 359 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 359 (462)
...|..+...+...|++++|+..|.+.+. ....+ ...++..+...|...|+.++|...++.... ....++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-----l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR-----LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 55677777888889999999999998542 21122 245788888999999999999999998763 233455
Q ss_pred HHHHHHHH-------hcCChHHHHHHHHHH
Q 036356 360 SAMTVGYG-------LHGLGEEGWVLFHHI 382 (462)
Q Consensus 360 ~~li~~~~-------~~~~~~~a~~~~~~m 382 (462)
..+...+. ..|+++.|...+++.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666666 777877665555543
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.46 E-value=0.68 Score=42.19 Aligned_cols=82 Identities=13% Similarity=-0.049 Sum_probs=50.6
Q ss_pred hccCCChhhHHHHHHhh-cCCCcch--HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL-LSNEENE--YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m-~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
-.-.|+++.|.+-|+.| ..|.... ..-|.-..-+.|+.+.|.+.-+..-.... .-...+.
T Consensus 130 al~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-----------------~l~WA~~ 192 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-----------------QLPWAAR 192 (531)
T ss_pred HHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-----------------CCchHHH
Confidence 34456666666666666 3333221 11122222355666666666555544432 3456788
Q ss_pred HHHHHHHhCCChhHHHHHHHHh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m 160 (462)
+.+...+..|+|+.|+++.+.-
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 9999999999999999999885
No 186
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.033 Score=47.28 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=30.2
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (462)
-|.+++--=+...-..|+--+|++-+.+. -..+..|...|.-+...|...|++++|.-.++++.
T Consensus 118 t~~v~~KRKlAilka~GK~l~aIk~ln~Y------L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 118 TDTVIRKRKLAILKAQGKNLEAIKELNEY------LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred chhHHHHHHHHHHHHcCCcHHHHHHHHHH------HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 34444443333344444444444444442 22344455555555555555555555555555543
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.41 E-value=0.0049 Score=41.74 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=34.1
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC-ChHHHHHHHHh
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG-YSNHAFKFIMN 416 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~ 416 (462)
.+|..+...+...|++++|+..|++..+ +.|+ ...|..+..++...| ++++|++.+++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3455555666666666666666666666 4454 445555556666666 46666665554
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.34 E-value=0.38 Score=47.05 Aligned_cols=69 Identities=13% Similarity=0.027 Sum_probs=36.2
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc--------hHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV--------IVNTVLIDMYAKCGSVDLAPMFFDRTLD 202 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (462)
.|-+..|..+...-...-.++.|...|-+.. .-.|++.-. ..-.+=+. +--|++++|++++-++..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~----dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG----DYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc----cccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccch
Confidence 4666677777776666666666666664431 111221100 00011111 223777888888877776
Q ss_pred CCc
Q 036356 203 KDV 205 (462)
Q Consensus 203 ~~~ 205 (462)
+|.
T Consensus 763 rDL 765 (1189)
T KOG2041|consen 763 RDL 765 (1189)
T ss_pred hhh
Confidence 654
No 189
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.31 E-value=0.03 Score=43.00 Aligned_cols=102 Identities=14% Similarity=-0.008 Sum_probs=74.0
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcC-CCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-YQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
|+.++..+|.++++.|+++....+++..-.-++ +....-..+.... ..|+..+..+++.+|+.+|++..|+++.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFF 78 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 567889999999999999999988876542221 1100000011111 4688999999999999999999999999998
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHhcCC
Q 036356 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189 (462)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 189 (462)
....+++.+..+|..|++-....-+
T Consensus 79 ----s~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 79 ----SRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred ----HHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 4777888888999999986655443
No 190
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.3 Score=43.84 Aligned_cols=112 Identities=12% Similarity=-0.088 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036356 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405 (462)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 405 (462)
-+.+--+.-+...|+..+|.++-.+.+-||...|-.=+.+++..+++++-+++-+.+.. +.-|.-.+.+|.++|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcc
Confidence 34444455677789999999999999999999999899999999999987777666553 355677889999999
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 406 YSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 406 ~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
+.++|.+.+-+.+-.+ -...+|.+.|++.+|.....+.
T Consensus 759 n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred cHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHHh
Confidence 9999999998873222 6778889999999998765543
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.25 E-value=0.009 Score=40.27 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=25.2
Q ss_pred ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 96 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 96 ~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.|++++|.++|+++.+..+ -+...+..+..+|.+.|++++|.++++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-----------------DNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-----------------TSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555533 34444445555555555555555555553
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.22 E-value=0.023 Score=51.55 Aligned_cols=265 Identities=13% Similarity=0.052 Sum_probs=158.5
Q ss_pred HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee----eHHHHHHHHHhCCChhHHHHHHHHhhhhhhh
Q 036356 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT----LRNAMISGYAKNGYAEEAVKLFPKWMDYYIG 166 (462)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 166 (462)
.-+++.|+.+....+|+..++-|- -|.. +|..|-++|.-.+++++|+++...=. -..+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-----------------eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl-tlar 86 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-----------------EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL-TLAR 86 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-----------------hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH-HHHH
Confidence 356899999999999999999885 3443 46667777888889999988754310 0001
Q ss_pred hcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhccCC-------C--CcchHHHHHHHHHhCc-----------------
Q 036356 167 KSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K--DVVMRSAMIVGYGLHE----------------- 219 (462)
Q Consensus 167 ~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~----------------- 219 (462)
..|-+. ...+...|-+.+--.|.+++|.-...+-.. + ....+..+-..|...|
T Consensus 87 ~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 87 LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 111111 122223344444555666666554332210 0 1111222222222111
Q ss_pred -----hHHHHHHHhhhc---------CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCC-CC
Q 036356 220 -----WSAFGSFDGLLS---------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ-PN 284 (462)
Q Consensus 220 -----~~a~~~~~~m~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 284 (462)
+.|.++|.+-.+ .-...|..|-+.|.-.|+++.|....+.-+...-+ +|.+ ..
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e------------fGDrAae 234 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE------------FGDRAAE 234 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH------------hhhHHHH
Confidence 345555554444 33456777777788889999998877653321100 1111 23
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---------CC
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---------KD 355 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~ 355 (462)
-..+..+-.++.-.|+++.|.+.|+..+.-...-..-......+-+|.+.|.-..++++|+..+.+-.. -.
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 356777888888899999999999875532222222333456666788888888888888888765331 23
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (462)
..++-+|..+|...|..++|+.+.+.-.+.
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456778888898888889988877665543
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.13 E-value=0.038 Score=50.16 Aligned_cols=125 Identities=13% Similarity=-0.021 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCC---------CCCccchHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHh
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTL---------DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----G-IEPRHQ 392 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~ 392 (462)
.|..|-+.|.-.|+++.|+...+.=. ......++.|..++.-.|+++.|.+.++.-... | -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555556678888876554221 124456778888899999999999888775443 2 222355
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 393 HYARVVDLLARAGYSNHAFKFIMNM--------PIELRLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
+..+|.+.|.-..++++|+.++.+- ...-....+.+|..++...|..+.|+.....-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6677888888888999998877653 2223456788899999999999999866554443
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.11 E-value=0.037 Score=44.11 Aligned_cols=77 Identities=8% Similarity=0.079 Sum_probs=58.2
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 315 (462)
....++..+...|+++.|.++...+.... +-|...|..+|.+|...|+..+|.+.|.+.....
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-----------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34556677788999999999999999875 3588899999999999999999999999877665
Q ss_pred HHhhCCCCchhHHH
Q 036356 316 IGKSEYRNNVIVNT 329 (462)
Q Consensus 316 ~~~~~~~p~~~~~~ 329 (462)
..+.|+.|+..+-.
T Consensus 127 ~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 127 REELGIEPSPETRA 140 (146)
T ss_dssp HHHHS----HHHHH
T ss_pred HHHhCcCcCHHHHH
Confidence 66789999877643
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.10 E-value=0.027 Score=38.52 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=41.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036356 364 VGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS 424 (462)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 424 (462)
..|.+.+++++|.++++.+.. +.|+ ...|......+.+.|++++|.+.++.. ...|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 456677778888888888777 5565 556666777777778888887777776 4445433
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.01 E-value=0.052 Score=41.23 Aligned_cols=107 Identities=15% Similarity=-0.009 Sum_probs=72.3
Q ss_pred HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC--eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhh
Q 036356 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN--VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG 166 (462)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 166 (462)
+-.++-..|+.++|..+|++....|+ ... ...+-.+.+.+...|++++|+.+|++. .
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL----------------~~~~~~~a~i~lastlr~LG~~deA~~~L~~~-----~ 65 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGL----------------SGADRRRALIQLASTLRNLGRYDEALALLEEA-----L 65 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC----------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----H
Confidence 44566678999999999999999887 322 235556778889999999999999986 2
Q ss_pred hcCCC--CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHH
Q 036356 167 KSEYR--NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216 (462)
Q Consensus 167 ~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 216 (462)
..... .+......+.-++...|+.++|.+++-....++...|.--|..|.
T Consensus 66 ~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 66 EEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 122222234446778899999988886655555555655555554
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.96 E-value=0.16 Score=49.57 Aligned_cols=133 Identities=9% Similarity=0.005 Sum_probs=93.8
Q ss_pred hCCCCchhHHHHHHHHHHhcCC-----cchHHHHhccCCC--CCc-cchHHHHHHHHhcC--------ChHHHHHHHHHH
Q 036356 319 SEYRNNVIVNTVLIDMYAKCGS-----VDLAPMFFDRTLD--KDV-VMRSAMTVGYGLHG--------LGEEGWVLFHHI 382 (462)
Q Consensus 319 ~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~--------~~~~a~~~~~~m 382 (462)
.....+...|...+++.....+ .+.|..+|++..+ |+- ..|..+..++.... +...+.+...+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4556778999999988655332 6689999998874 543 34554444443321 123344444443
Q ss_pred HHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 383 RKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 383 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
... ....+...|..+.-.....|++++|...+++. .+.|+...|..+.+.+...|+.++|+..+.+.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 332 23334577888877777789999999999998 7778999999999999999999999988877654
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.94 E-value=0.29 Score=42.74 Aligned_cols=57 Identities=7% Similarity=-0.016 Sum_probs=44.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKH--GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4566688888998899888888886 44444677788889999999999988876543
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.91 E-value=0.53 Score=38.24 Aligned_cols=124 Identities=12% Similarity=-0.043 Sum_probs=94.7
Q ss_pred hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---
Q 036356 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--- 390 (462)
Q Consensus 318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--- 390 (462)
+-...|+...--.|..++.+.|+..+|...|++... .|....-.+..+....+++..|...++++.+. .|+
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~ 159 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRS 159 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCC
Confidence 344678888778899999999999999999998763 46666777788888899999999999999884 343
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHH
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENM 443 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~ 443 (462)
..+.-.+...|...|++.+|...|+.. ..-|+...--....-+.++|+..++.
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 345566778899999999999999987 55566554444444455666555554
No 200
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.90 E-value=1.5 Score=40.91 Aligned_cols=362 Identities=12% Similarity=0.032 Sum_probs=189.5
Q ss_pred hccCCChhhHHHHHHhh---cCCC------cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCC
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNE------ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 132 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p 132 (462)
+.+++++.+|.++|.++ ...+ ...-+.+|+++- ..+.+.....+....+.. |
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~------------------~ 76 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF------------------G 76 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc------------------C
Confidence 66788999999999999 2222 223445666664 345666666666666542 3
Q ss_pred CeeeHHHHHHH--HHhCCChhHHHHHHHHhhhhhhhhc--CCCC------------CchHHHHHHHHHHhcCCcccHHHH
Q 036356 133 NVTLRNAMISG--YAKNGYAEEAVKLFPKWMDYYIGKS--EYRN------------NVIVNTVLIDMYAKCGSVDLAPMF 196 (462)
Q Consensus 133 ~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~ 196 (462)
...|-.|..+ +-+.+++..|++.+.... .. +..| |...=+..+.++...|.+.++..+
T Consensus 77 -~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~-----~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 77 -KSAYLPLFKALVAYKQKEYRKALQALSVWK-----EQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred -CchHHHHHHHHHHHHhhhHHHHHHHHHHHH-----hhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4455555555 346788888888776652 22 2221 222235566778888999999998
Q ss_pred hhccCC--------CCcchHHHHHHHHHhCc-----------------hHHHHHHHhhhc----------CCcchHHHHH
Q 036356 197 FDRTLD--------KDVVMRSAMIVGYGLHE-----------------WSAFGSFDGLLS----------NEENEYGTAL 241 (462)
Q Consensus 197 ~~~m~~--------~~~~~~~~li~~~~~~~-----------------~~a~~~~~~m~~----------~~~~~~~~ll 241 (462)
+++|.+ -+..+|+.++-.++++- +.++-..++|.. |-...+..++
T Consensus 151 Ln~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 151 LNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHH
Confidence 888763 36667777554444331 222223333332 4444444444
Q ss_pred HhhcC--ccchhhhHHHHHHHHHhCCCcchHHH-HHHHHh-----------hc----------CCCCHhHHHHHHHHHHc
Q 036356 242 DCSCD--LEFLEQGKIVHGFMIKLGLELESDLL-ISLTAV-----------CR----------YQPNVTLWNAMISGYAK 297 (462)
Q Consensus 242 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~-----------~~----------~~~~~~~~~~li~~~~~ 297 (462)
....- .....--.++++.....-+.|+-... ..++.. |. .+.=+.++..++....+
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 12223333444444444444433321 111111 00 11123456667777777
Q ss_pred CCChhHHHHHhhHHH-------------------HHH------------------HHhhCCCCch-hHHHHHHH---HHH
Q 036356 298 NGYAEEAVKLFPKWM-------------------DYY------------------IGKSEYRNNV-IVNTVLID---MYA 336 (462)
Q Consensus 298 ~~~~~~a~~~~~~~~-------------------~~~------------------~~~~~~~p~~-~~~~~li~---~~~ 336 (462)
.++..+|.+.+.-.. .+. +.......|. ....-|+. -+-
T Consensus 311 ~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 777777777662210 000 0000000110 00011111 122
Q ss_pred hcCC-cchHHHHhccCCC---CCccchHHHHH----HHHh---cCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHH-
Q 036356 337 KCGS-VDLAPMFFDRTLD---KDVVMRSAMTV----GYGL---HGLGEEGWVLFHHIRKHGIEPR----HQHYARVVDL- 400 (462)
Q Consensus 337 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li~----~~~~---~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~- 400 (462)
+.|. -++|.++++.+.+ -|..+-|.+.. .|.. ...+.+-..+-+-..+.|++|- ...-|.|.+|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 2333 5556666665543 23333332211 2221 1223334444444555577774 3344555554
Q ss_pred -HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 401 -LARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 401 -~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
+...|++.++.-.-..+ .+.|++.+|..+.-.+....++.+|-..+..
T Consensus 471 yLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 45678888887766666 7788888888888888888888888866654
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.88 E-value=0.28 Score=47.44 Aligned_cols=19 Identities=5% Similarity=-0.134 Sum_probs=12.0
Q ss_pred HHhhcCccchhhHHHHHHH
Q 036356 90 LDCSCDLEFLEQGKIVHGF 108 (462)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~ 108 (462)
...|+-.|.+.+|-++|.+
T Consensus 639 A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 3455666777777777653
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=0.79 Score=44.95 Aligned_cols=140 Identities=11% Similarity=-0.024 Sum_probs=71.7
Q ss_pred cchhhHHHHHHHHHHhcCCcchhH---------HHHHhhhcC----CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356 97 EFLEQGKIVHGFMIKLGLELESDL---------LISLTAVCR----YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163 (462)
Q Consensus 97 ~~~~~a~~~~~~m~~~g~~~~~~~---------l~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (462)
|++++|+++|-+|-++++ .-+. +++.+...| ...-...|+.+...++....|++|.+.|..-
T Consensus 748 g~feeaek~yld~drrDL--Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~--- 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL--AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC--- 822 (1189)
T ss_pred cchhHhhhhhhccchhhh--hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 677778887777776655 1111 222222211 1111234555555555555555555555441
Q ss_pred hhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHH
Q 036356 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTAL 241 (462)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll 241 (462)
| + -...+.++.+..++++.+.+...+. .|......+...+.+.| ++|.+.|-+-..|- ..+
T Consensus 823 -----~---~---~e~~~ecly~le~f~~LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv 885 (1189)
T KOG2041|consen 823 -----G---D---TENQIECLYRLELFGELEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAV 885 (1189)
T ss_pred -----c---c---hHhHHHHHHHHHhhhhHHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHH
Confidence 0 0 0124445555555555544444443 23444556667777777 77766665543332 345
Q ss_pred HhhcCccchhhhHHHHH
Q 036356 242 DCSCDLEFLEQGKIVHG 258 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~ 258 (462)
..|...++|.+|.++-+
T Consensus 886 ~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666777777666543
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.12 Score=44.17 Aligned_cols=143 Identities=12% Similarity=0.003 Sum_probs=94.5
Q ss_pred hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164 (462)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (462)
+-+.+++++...|++.-....+.+..+... +.++.....|.+.-.+.||.+.|...|++.....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~----------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~ 242 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYP----------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT 242 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCC----------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 345667777778888888888888888776 6778888889999999999999999999862111
Q ss_pred hhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHH--HHHHHHhCchHHHHHHHhhhc--CCcchH
Q 036356 165 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSA--MIVGYGLHEWSAFGSFDGLLS--NEENEY 237 (462)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~--li~~~~~~~~~a~~~~~~m~~--~~~~~~ 237 (462)
.+-.+++.+..+.......|.-++++..|...++++... |+..-|. ++..|...-.+|++..+.|.. |...+-
T Consensus 243 ~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 243 QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 122233333333333444566678888888889887753 3333332 333332222788888888877 666665
Q ss_pred HHHHHh
Q 036356 238 GTALDC 243 (462)
Q Consensus 238 ~~ll~~ 243 (462)
++++-.
T Consensus 323 es~~~n 328 (366)
T KOG2796|consen 323 ESVLFN 328 (366)
T ss_pred hhHHHH
Confidence 555443
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.73 E-value=0.021 Score=39.69 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCc-hhHHHHHHHHHHhcCCcchHHHHhcc
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNN-VIVNTVLIDMYAKCGSVDLAPMFFDR 350 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (462)
..+|+.+...|...|++++|+..|++.+.- ....|. .|+ ..+++.+...|...|++++|.+.+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356788888999999999999999887653 222332 122 55677777777778887777777654
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.70 E-value=0.016 Score=39.10 Aligned_cols=62 Identities=19% Similarity=0.054 Sum_probs=53.7
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC-ChhHHHHHHHHh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG-YAEEAVKLFPKW 160 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m 160 (462)
+..+|..+...+.+.|++++|...|++..+... -+...|..+..++.+.| ++++|++.|++-
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-----------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-----------------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-----------------THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 456788888899999999999999999999875 57778888999999999 799999999874
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.64 E-value=0.018 Score=40.10 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=25.1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKH--GIE---PR-HQHYARVVDLLARAGYSNHAFKFIM 415 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~ 415 (462)
|+.+...|...|++++|+..|++..+. ... |+ ..++..+...|...|++++|++.++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444445555555555555555544432 011 11 2334444444455555555554444
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.72 Score=39.67 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=93.3
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
..+.+.++.++.-.+.+.-....+.+.++..-+ .+......+.+.-.+.|+.+.|...|++
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e----------------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~--- 237 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE----------------QEPQLLSGLGRISMQIGDIKTAEKYFQD--- 237 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc----------------ccHHHHHHHHHHHHhcccHHHHHHHHHH---
Confidence 345567777777788888888888888876532 4667777888888889999999999987
Q ss_pred HHHHhhCCCCchhHHHHHHH-----HHHhcCCcchHHHHhccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356 314 YYIGKSEYRNNVIVNTVLID-----MYAKCGSVDLAPMFFDRTLDK---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 314 ~~~~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (462)
..+..-..|..+.+.++. .|.-.+++..|...|+++... |...-|.=.-+..-.|+...|++.++.|..
T Consensus 238 --vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~- 314 (366)
T KOG2796|consen 238 --VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ- 314 (366)
T ss_pred --HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 444444445445544443 344566777888888777642 333334333333346788888888888887
Q ss_pred CCCCCHhHHHH
Q 036356 386 GIEPRHQHYAR 396 (462)
Q Consensus 386 g~~p~~~~~~~ 396 (462)
..|...+-++
T Consensus 315 -~~P~~~l~es 324 (366)
T KOG2796|consen 315 -QDPRHYLHES 324 (366)
T ss_pred -cCCccchhhh
Confidence 5565554443
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.62 E-value=0.84 Score=35.92 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHH
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 365 (462)
.....++..+.+.+.+.....+++. +...+ ..+....+.++..|++.+. ++....++. ..+.......++.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~-----~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLES-----ALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHH-----HHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHH
Confidence 3445678888888899999999988 44445 3677889999999998643 444444442 3455556678888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-GYSNHAFKFIMNMPIELRLSVRRALLSAWKIP 436 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~ 436 (462)
|.+.+.++++..++.++.. |...+..+... ++++.|.+++++- .+...|..++..+...
T Consensus 79 c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALLDK 138 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHHcc
Confidence 9889999999888887643 23344444444 8899999998884 3677898888877643
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.60 E-value=1.4 Score=38.45 Aligned_cols=174 Identities=10% Similarity=-0.035 Sum_probs=97.5
Q ss_pred hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCH-hH---HHHHHHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TL---WNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 318 (462)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (462)
.+.+.|++++|.+.|+.+.... |+. .. .-.+..+|.+.+++++|...+++.+. .
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~y------------------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~----~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRY------------------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR----L 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----h
Confidence 3455788888888888887753 222 11 23456677888888888888888532 2
Q ss_pred hCCCCchhHHHHHHHHHHhcCCcchHHHHhccC---CC--CCc-------cchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT---LD--KDV-------VMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386 (462)
Q Consensus 319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~--~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 386 (462)
..-.|+ .-|...+.+.+.... ....|... .. .|. ..+..++.-|=...-..+|...+..+...
T Consensus 99 ~P~~~~-~~~a~Y~~g~~~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 99 NPTHPN-IDYVLYMRGLTNMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred CcCCCc-hHHHHHHHHHhhhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 222222 233333333332100 00111111 10 011 13345555555555556665555544431
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036356 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNM-----PIELRLSVRRALLSAWKIPMQQWENMLQT 446 (462)
Q Consensus 387 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 446 (462)
. ...--.+..-|.+.|.+.-|..-++.+ +..........+..+|...|..++|....
T Consensus 174 --l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 174 --L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred --H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1 111124556688999999998888887 33334557778889999999998887544
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.56 E-value=2.1 Score=40.07 Aligned_cols=254 Identities=13% Similarity=0.038 Sum_probs=138.0
Q ss_pred HhcCCcccHHHHhhccCCC---C------cchHHHHHHHHHhCc-hHHHHHHHhhhc--CCcchHHHHHHhh--cCccch
Q 036356 185 AKCGSVDLAPMFFDRTLDK---D------VVMRSAMIVGYGLHE-WSAFGSFDGLLS--NEENEYGTALDCS--CDLEFL 250 (462)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~---~------~~~~~~li~~~~~~~-~~a~~~~~~m~~--~~~~~~~~ll~~~--~~~~~~ 250 (462)
-+.+++.+|+++|.++.+. + .+.-+.++++|..++ +..........+ | ...|-.+..++ -+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhhH
Confidence 4567777788777776532 1 223456777887777 444444444444 4 44555555544 377888
Q ss_pred hhhHHHHHHHHHh--CCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHH
Q 036356 251 EQGKIVHGFMIKL--GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN 328 (462)
Q Consensus 251 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~ 328 (462)
..|.+.+.....+ +-.+ ...+.-+.. .-+|-..=+..+.++...|++.++..+++++++..+ ++...-+..+|
T Consensus 96 ~kal~~ls~w~~~~~~~~~--~~Ld~ni~~--l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll-krE~~w~~d~y 170 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTES--PWLDTNIQQ--LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL-KRECEWNSDMY 170 (549)
T ss_pred HHHHHHHHHHHhhhccccc--chhhhhHHH--HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-hhhhcccHHHH
Confidence 8888888877665 3222 111111111 114445556677889999999999999999776643 44556788889
Q ss_pred HHHHHHHHhcC--------CcchHHHHhccC-------CCCCccch----------HHHHHHHHhc--CChHHHHHHHHH
Q 036356 329 TVLIDMYAKCG--------SVDLAPMFFDRT-------LDKDVVMR----------SAMTVGYGLH--GLGEEGWVLFHH 381 (462)
Q Consensus 329 ~~li~~~~~~g--------~~~~A~~~~~~~-------~~~~~~~~----------~~li~~~~~~--~~~~~a~~~~~~ 381 (462)
+.++-.+++.= ..+-+...++.+ ...|...| ..++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 88777666532 122222222222 11122111 1122211111 111112222222
Q ss_pred HHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC---CCCC----CHHHHHHHHHHHHccCChHHHHHHH
Q 036356 382 IRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM---PIEL----RLSVRRALLSAWKIPMQQWENMLQT 446 (462)
Q Consensus 382 m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~ 446 (462)
-...-+.|+ .-....|+..+.. +.+++..+.+.+ .+.+ =..++..++...+++++...|-..+
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 233345665 3344555555555 566666666655 1111 2346778888888888877776444
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.55 E-value=0.2 Score=44.23 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCCC--CCc----cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHH
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTLD--KDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYAR 396 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ 396 (462)
.|...+..+.+.|++++|...|+...+ |+. ..+-.+...|...|++++|...|+.+.+. .|+ ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 344444433445566666666655542 332 23444555556666666666666666552 222 233333
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036356 397 VVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m 417 (462)
+...+...|++++|.++++.+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444555556666666666555
No 212
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.55 E-value=0.05 Score=36.17 Aligned_cols=55 Identities=11% Similarity=-0.037 Sum_probs=46.0
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 397 VVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
+...+.+.|++++|.+.|+.. ...| +...|..+...+...|++++|+..+.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788999999999999998 5556 677899999999999999999988877654
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.53 E-value=0.065 Score=47.22 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC----ccchH
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----VVMRS 360 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~ 360 (462)
.|..-+..+.+.|++++|...|+..+..+ .+.... ...+-.+...|...|++++|...|+.+.+ |+ ...+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a--~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQ--PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35555544556667777777776643210 000011 12444566666667777777776666652 22 12233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 390 (462)
.+...+...|+.++|..+|+...+ ..|+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~--~yP~ 249 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK--KYPG 249 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 344455566677777777776666 4454
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.50 E-value=1.9 Score=39.39 Aligned_cols=292 Identities=11% Similarity=0.004 Sum_probs=176.3
Q ss_pred eHHHHHHHHHh--CCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHH--HhcCCcccHHHHhhccCC-CCcch--H
Q 036356 136 LRNAMISGYAK--NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY--AKCGSVDLAPMFFDRTLD-KDVVM--R 208 (462)
Q Consensus 136 ~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~-~~~~~--~ 208 (462)
-|.+|-.++.. .|+-..|.++-.+- ..-+..|..-.-.++.+- .-.|+.+.|.+-|+.|.. |.... .
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~------~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARA------SKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHH------HhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhH
Confidence 35555555543 57888888777662 333555555544455443 346999999999999984 32211 1
Q ss_pred HHHHHHHHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC
Q 036356 209 SAMIVGYGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283 (462)
Q Consensus 209 ~~li~~~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 283 (462)
..+.-.--+.| +.|...-++.-. |. .......+...|..|+++.|+++++.-+...+. .+
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi---------------e~ 222 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI---------------EK 222 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---------------ch
Confidence 11211122334 555555554444 33 467788999999999999999999987765542 34
Q ss_pred CHhH--HHHHHHHHH---cCCChhHHHHHhhHHHHHHHHhhCCCCchh-HHHHHHHHHHhcCCcchHHHHhccCCCCCcc
Q 036356 284 NVTL--WNAMISGYA---KNGYAEEAVKLFPKWMDYYIGKSEYRNNVI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357 (462)
Q Consensus 284 ~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 357 (462)
++.- -..|+.+-. -.-+...|...-.+ ...+.|+.. .-..-..++.+.|++.++-.+++.+-+....
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~-------a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALE-------ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH-------HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 4322 222222211 11233334333322 344556532 2223457788999999999999988643333
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWK 434 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~ 434 (462)
.--.++..+.+.|+. +..-+++..+. .++|| ..+...+..+-...|++..|..--+.. ...|....|..|...--
T Consensus 296 P~ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIee 373 (531)
T COG3898 296 PDIALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEE 373 (531)
T ss_pred hHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHh
Confidence 323344555566654 33333333332 37777 677788888888999998887766666 66788888888877655
Q ss_pred cc-CChHHHHHHHHhhhhcCCCCC
Q 036356 435 IP-MQQWENMLQTIRGIDEGEKTD 457 (462)
Q Consensus 435 ~~-~~~~~a~~~~~~~~~~~~~pd 457 (462)
.. |+..+...++-+....--.|+
T Consensus 374 AetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hccCchHHHHHHHHHHhcCCCCCc
Confidence 44 888777777766655444443
No 215
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.44 E-value=2.3 Score=39.75 Aligned_cols=89 Identities=12% Similarity=-0.051 Sum_probs=62.1
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVR-RALLSAWK 434 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~l~~~~~ 434 (462)
.|..++..-.+..-.+.|..+|-++.+.| +.+++..+++++.-++ .|+...|.++|+-- ...||...| +-.+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 46667777777777888889999998888 6677888888887766 47888888888764 444555544 34555555
Q ss_pred ccCChHHHHHHHH
Q 036356 435 IPMQQWENMLQTI 447 (462)
Q Consensus 435 ~~~~~~~a~~~~~ 447 (462)
.-++-..|..++.
T Consensus 478 ~inde~naraLFe 490 (660)
T COG5107 478 RINDEENARALFE 490 (660)
T ss_pred HhCcHHHHHHHHH
Confidence 5666666654443
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.18 Score=44.20 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=15.3
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
|...|-.|-..|...|+.+.|..-|.+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~ 181 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRN 181 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHH
Confidence 555555555555555555555555555
No 217
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.92 E-value=0.011 Score=46.95 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=86.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhC
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLH 218 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 218 (462)
.++..+.+.+.++.+.++++.+ ...+...+....+.++..|++.++.+...++++.... .....++..+.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~-----~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEAL-----VKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHH-----HHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHH-----HhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhc
Confidence 4678888899999999999997 5566667788999999999999999999999995443 4445667777777
Q ss_pred c--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 036356 219 E--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYA 296 (462)
Q Consensus 219 ~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~ 296 (462)
+ ++|.-++.++...+ ..+..+...++++.|.+.... .++...|..+++.+.
T Consensus 84 ~l~~~a~~Ly~~~~~~~-----~al~i~~~~~~~~~a~e~~~~----------------------~~~~~l~~~l~~~~l 136 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHD-----EALEILHKLKDYEEAIEYAKK----------------------VDDPELWEQLLKYCL 136 (143)
T ss_dssp TSHHHHHHHHHCCTTHT-----TCSSTSSSTHCSCCCTTTGGG----------------------CSSSHHHHHHHHHHC
T ss_pred chHHHHHHHHHHcccHH-----HHHHHHHHHccHHHHHHHHHh----------------------cCcHHHHHHHHHHHH
Confidence 7 67777777664411 111124455566666533322 256777877877776
Q ss_pred cCCC
Q 036356 297 KNGY 300 (462)
Q Consensus 297 ~~~~ 300 (462)
..+.
T Consensus 137 ~~~~ 140 (143)
T PF00637_consen 137 DSKP 140 (143)
T ss_dssp TSTC
T ss_pred hcCc
Confidence 6554
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.51 Score=41.52 Aligned_cols=106 Identities=11% Similarity=0.076 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCC-HhHHHH
Q 036356 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHG---LGEEGWVLFHHIRKHGIEPR-HQHYAR 396 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~ 396 (462)
|...|-.|...|...|+.+.|..-|.+..+ +|...+..+..++.... ...++..+|+++.. ..|+ ..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHHH
Confidence 566777777777777777777777765542 45555555555444332 34566677777776 5555 455556
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036356 397 VVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLS 431 (462)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 431 (462)
|...+...|++.+|...++.| ..-|....+..++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 666677777777777777776 33344444444443
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.81 E-value=1.5 Score=37.20 Aligned_cols=166 Identities=11% Similarity=-0.037 Sum_probs=84.3
Q ss_pred HHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320 (462)
Q Consensus 241 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (462)
...+...|++++|.+.|+.+...... .+--....-.++.++.+.|+++.|...+++.+. ...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~--------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~----~yP 73 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPN--------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK----LYP 73 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TT--------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----H-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC--------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCC
Confidence 34456788899999999998876432 012234455677888999999999999988543 222
Q ss_pred CCCchhHHHHHHHHHHhcC----------C---cchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356 321 YRNNVIVNTVLIDMYAKCG----------S---VDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387 (462)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g----------~---~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 387 (462)
-.|. .-+...+.+.+... + ..+|.. .+..++.-|=.+....+|...+..+.+.
T Consensus 74 ~~~~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~-----------~~~~li~~yP~S~y~~~A~~~l~~l~~~-- 139 (203)
T PF13525_consen 74 NSPK-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIE-----------EFEELIKRYPNSEYAEEAKKRLAELRNR-- 139 (203)
T ss_dssp T-TT-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHH-----------HHHHHHHH-TTSTTHHHHHHHHHHHHHH--
T ss_pred CCcc-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHH-----------HHHHHHHHCcCchHHHHHHHHHHHHHHH--
Confidence 2222 22222222222111 1 112222 2344555555555555555544444431
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHccCChH
Q 036356 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR----LSVRRALLSAWKIPMQQW 440 (462)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~ 440 (462)
. ...--.+..-|.+.|.+..|..-++.+ ..-|+ ......++.+|.+.|..+
T Consensus 140 -l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 140 -L-AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp -H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred -H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 0 111122445566777777777666665 11122 234456667777776655
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=1.2 Score=37.87 Aligned_cols=202 Identities=8% Similarity=-0.014 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCchHHHHHHHhhhc-CC-cchHHHHHHhhcCccch
Q 036356 176 VNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHEWSAFGSFDGLLS-NE-ENEYGTALDCSCDLEFL 250 (462)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~a~~~~~~m~~-~~-~~~~~~ll~~~~~~~~~ 250 (462)
.|.-...+|....++++|...+.+..+ .|...| .--++| +.|..+.+++.+ +. ...|+.....|...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-hAAKay----EqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-HAAKAY----EQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-HHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 455556677777888888776655431 111111 111111 445555555544 11 22344445555555555
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (462)
+.|-..++..-+ ..++-++++|++++.+.+.-.........-...|..
T Consensus 108 dtAAmaleKAak--------------------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 108 DTAAMALEKAAK--------------------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred chHHHHHHHHHH--------------------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 555554444332 234456666666666644311111112222344555
Q ss_pred HHHHHHhcCCcchHHHHhccCCC--------CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC-CHhHHHHHH
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTLD--------KD-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--IEP-RHQHYARVV 398 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p-~~~~~~~li 398 (462)
.-+.+.+..++++|-..|.+-.. ++ ...|-..|-.|.-..++..|.+.+++-.+-+ ..| +..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 55566666666666554443321 11 1224455666666777888888877755431 112 255666677
Q ss_pred HHHHhcCChHHHHHHHH
Q 036356 399 DLLARAGYSNHAFKFIM 415 (462)
Q Consensus 399 ~~~~~~g~~~~A~~~~~ 415 (462)
.+|- .|+.+++.+++.
T Consensus 236 ~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 236 TAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHhc-cCCHHHHHHHHc
Confidence 6654 577777766543
No 221
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.64 E-value=0.0053 Score=48.81 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=88.8
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhc
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH 369 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 369 (462)
.+|..+.+.+.++....+++. +...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~-----~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEA-----LVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHH-----HHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHH-----HHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhc
Confidence 356677778888888888888 555565677888999999999998888888888733 334456778888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 036356 370 GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQ 439 (462)
Q Consensus 370 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~ 439 (462)
|.++.|.-++.++-...- .+..+...++++.|.+.+.+. ++...|..+++.|...+..
T Consensus 84 ~l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~---~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKV---DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp TSHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGC---SSSHHHHHHHHHHCTSTCT
T ss_pred chHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhc---CcHHHHHHHHHHHHhcCcc
Confidence 888877776666443211 111133456666666555554 5688899999998877653
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.59 E-value=0.13 Score=44.42 Aligned_cols=101 Identities=8% Similarity=0.150 Sum_probs=75.4
Q ss_pred cCCCcchHHHHHHhhc-----CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCC----
Q 036356 79 LSNEENEYGTALDCSC-----DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY---- 149 (462)
Q Consensus 79 ~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 149 (462)
-+.|-.+|-..+..+. +.+.++-....+..|.+.|+ +.|..+|+.||+.+-+..-
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV----------------erDl~vYk~LlnvfPKgkfiP~n 126 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV----------------ERDLDVYKGLLNVFPKGKFIPQN 126 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc----------------hhhHHHHHHHHHhCcccccccHH
Confidence 3566677777777664 34567777788899999999 8999999999988766532
Q ss_pred ------------hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcc-cHHHHhhcc
Q 036356 150 ------------AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD-LAPMFFDRT 200 (462)
Q Consensus 150 ------------~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m 200 (462)
-+=++.++++| ...|+.||..+-..|++++.+.+-.- +..+++-.|
T Consensus 127 vfQ~~F~HYP~QQ~C~I~vLeqM-----E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 127 VFQKVFLHYPQQQNCAIKVLEQM-----EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHhhCchhhhHHHHHHHHH-----HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23368899998 89999999999999999998876532 333443333
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.56 E-value=0.095 Score=35.74 Aligned_cols=53 Identities=17% Similarity=0.006 Sum_probs=43.1
Q ss_pred HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
..+.+.++++.|.++++.+.+.++ .+...|......+.+.|++++|.+.|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-----------------DDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-----------------ccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 456778888888888888888865 57777777888888888888888888886
No 224
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.55 E-value=2 Score=34.66 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=78.0
Q ss_pred HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhHH
Q 036356 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRHQHY 394 (462)
Q Consensus 316 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~ 394 (462)
+...++.|+...|..+++.+.+.|+...-..++..-.-+|.......+-.+. +.+..+.++--+|.++ + ..+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~ 92 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAY 92 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhH
Confidence 4567899999999999999999999888888777655555554444443332 2334444444444432 1 156
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 036356 395 ARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQ 439 (462)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~ 439 (462)
..+++.+...|++-+|+++.+..+. .+......++.+....++.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDD 136 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCH
Confidence 7888899999999999999988621 2233345567776666654
No 225
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.52 E-value=3.9 Score=43.07 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=76.3
Q ss_pred CCCHhHHHHHHH----HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCcc
Q 036356 282 QPNVTLWNAMIS----GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357 (462)
Q Consensus 282 ~~~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 357 (462)
+|+...+..+.. -+...+.+++|.-.|+. .| -..--+.+|..+|+|.+|..+...+..+-..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~--------~G------klekAl~a~~~~~dWr~~l~~a~ql~~~~de 997 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYER--------CG------KLEKALKAYKECGDWREALSLAAQLSEGKDE 997 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHH--------hc------cHHHHHHHHHHhccHHHHHHHHHhhcCCHHH
Confidence 466655554443 44456677777666655 11 1123467788888899888888887754322
Q ss_pred ch---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 358 MR---SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 358 ~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.- ..|+.-+...++.-+|-++..+-.. ...-.+..|+++..|++|.++....
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~s--------d~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLS--------DPEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhc--------CHHHHHHHHhhHhHHHHHHHHHHhc
Confidence 22 5677888888888888888877765 1244566778888899998887766
No 226
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.50 E-value=6.7 Score=41.43 Aligned_cols=293 Identities=10% Similarity=0.034 Sum_probs=133.4
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhhhhhhcCC--CCCchHHHHHHHHHHhc-CCcccHHHHhhccCCCCcc--hHHH----
Q 036356 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLDKDVV--MRSA---- 210 (462)
Q Consensus 140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~--~~~~---- 210 (462)
-+.-+.+.+++.+|.++.++-+ ....+ .-+...|-.=+.++.+. ++.+-...++..+++.|+. .|..
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhR----idlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s 758 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHR----IDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGS 758 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----cCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccc
Confidence 3455677788888888776642 11111 11233333333344443 5566666666666643321 1111
Q ss_pred HHHHHHhCc---hHHHHHHHhhhc------CCcchHHHHHHhhcCcc--chhhhHHHHHHHHHhCCCcchHHHHHHHHhh
Q 036356 211 MIVGYGLHE---WSAFGSFDGLLS------NEENEYGTALDCSCDLE--FLEQGKIVHGFMIKLGLELESDLLISLTAVC 279 (462)
Q Consensus 211 li~~~~~~~---~~a~~~~~~m~~------~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (462)
-...|.... .+.-.+++.+.. |+ ...-.+|.++.+.+ .++++++.......... ...+=.++=.+|
T Consensus 759 ~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~al~hll 835 (1265)
T KOG1920|consen 759 GKQVYMSRDPYDNKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEALKHLL 835 (1265)
T ss_pred cceeEEeccchhhHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHHHHHHH
Confidence 111122222 223333333333 44 56667888888877 78888877777765221 222222222223
Q ss_pred cCCCCHhHHHHHHH----------HHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcC--CcchHH
Q 036356 280 RYQPNVTLWNAMIS----------GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCG--SVDLAP 345 (462)
Q Consensus 280 ~~~~~~~~~~~li~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g--~~~~A~ 345 (462)
-..+.-..|++-+. +-....++.+-+-++++.-...-..+.+..| ..-|...+.-+.+.| -++++.
T Consensus 836 ~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~ 915 (1265)
T KOG1920|consen 836 FLVDVNELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECK 915 (1265)
T ss_pred hhccHHHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHH
Confidence 32333333443322 2233445555555554421100111222222 223444444444444 344444
Q ss_pred HHhccCC---------CCCccc----hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 036356 346 MFFDRTL---------DKDVVM----RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK 412 (462)
Q Consensus 346 ~~~~~~~---------~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 412 (462)
++.++=. .|+... |.+....+.....+++|.-.|+..-+ ..--+.+|..+|+|.+|+.
T Consensus 916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHH
Confidence 4443221 234333 33333334444555555544443322 1234455666666666666
Q ss_pred HHHhCCCCCCHHH--HHHHHHHHHccCChHHHHHHHHh
Q 036356 413 FIMNMPIELRLSV--RRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 413 ~~~~m~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
+-.++....|... -..|..-+..+++..+|.+.+.+
T Consensus 987 ~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 987 LAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 6666632233322 24556666666666666544443
No 227
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.36 E-value=1 Score=45.32 Aligned_cols=351 Identities=13% Similarity=0.092 Sum_probs=146.4
Q ss_pred CCceeehhh--hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchh-------hHHHHHHHHHHhcCCcchhH
Q 036356 53 RTIVFLDLY--HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLE-------QGKIVHGFMIKLGLELESDL 120 (462)
Q Consensus 53 ~~~~~~~~~--~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~-------~a~~~~~~m~~~g~~~~~~~ 120 (462)
.+...|..+ +.+.|++++|.++.... .......|...+..+....+-. +...-|++..+... ..|.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~--~~Dp 187 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST--DGDP 187 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T--TS-H
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC--CCCh
Confidence 355678888 99999999999999666 6666778899999997754322 33334444433322 1144
Q ss_pred ----HHHHhhhcCC----CCCe----eeHHHHHHHHHhCCC-----------hhHHHHHHHHhhhhhhhhcCCCCCchHH
Q 036356 121 ----LISLTAVCRY----QPNV----TLRNAMISGYAKNGY-----------AEEAVKLFPKWMDYYIGKSEYRNNVIVN 177 (462)
Q Consensus 121 ----l~~~~~~~~~----~p~~----~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 177 (462)
+....++|.. .|.+ .-|--+=-.+++... +++..+.+.+. .+..+.++. ..
T Consensus 188 yK~AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~-----Ge~~F~~~~-~p 261 (613)
T PF04097_consen 188 YKRAVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKY-----GESHFNAGS-NP 261 (613)
T ss_dssp HHHHHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----
T ss_pred HHHHHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHh-----chhhcccch-hH
Confidence 4555555552 1211 112111112222221 22222222222 233333311 11
Q ss_pred HHHHHHHHhcCCcccHHHHhhc--cCCCCcchHHHHHHHHHhCc-hHHHHHHHhhhc-----CCcchHHHHHHhhcC---
Q 036356 178 TVLIDMYAKCGSVDLAPMFFDR--TLDKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS-----NEENEYGTALDCSCD--- 246 (462)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~--m~~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~-----~~~~~~~~ll~~~~~--- 246 (462)
-.....+.-+|+++.|++++-+ ....|.+...+.+.-|.--. ..... ..+.. |...-+..||..|++
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~--~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS--APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc--cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 2244556678999999999887 22334555444444332222 11100 22222 222456777777764
Q ss_pred ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC-ChhHHHHHhhHHHHHHHHhhCCCCch
Q 036356 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG-YAEEAVKLFPKWMDYYIGKSEYRNNV 325 (462)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~ 325 (462)
..+..+|.+.+-.+....-+.....+...++.. -....-|..++.-.-..| +...+++--.. --++..+.
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eL--vletref~~LLG~i~~dG~r~~G~i~~~~~-------Li~~~~~~ 410 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLREL--VLETREFDLLLGDINPDGSRTPGLIERRLS-------LIKFDDDE 410 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHH--HHHH--HHHHHEEE-TTS-EEE-HHHHTGG-------GGT-SSSS
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH--HHccCCHHHHCCCCCCCCccccceeecccc-------ccCCCCcH
Confidence 445566666665544332211111111111110 000111111111000011 01111111000 01122222
Q ss_pred hHHHHH----HHHHHhcCCcchHHHHhccCCCCCcc--chHHHHH-HHHhcCC-----------hHHHHHHHHHHHHCC-
Q 036356 326 IVNTVL----IDMYAKCGSVDLAPMFFDRTLDKDVV--MRSAMTV-GYGLHGL-----------GEEGWVLFHHIRKHG- 386 (462)
Q Consensus 326 ~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~-~~~~~~~-----------~~~a~~~~~~m~~~g- 386 (462)
.....+ ..-+...|++++|..+|.-..+.|.+ ..|.++. +...... ...|.++.+.....+
T Consensus 411 ~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~ 490 (613)
T PF04097_consen 411 DFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPH 490 (613)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcc
Confidence 222222 23456678888888888877654322 2333332 2222222 345555555554432
Q ss_pred ----CCCC-HhHHHHHHHH-----HHhcCChHHHHHHHHhCCCCCC
Q 036356 387 ----IEPR-HQHYARVVDL-----LARAGYSNHAFKFIMNMPIELR 422 (462)
Q Consensus 387 ----~~p~-~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 422 (462)
+.+. ..|+..|++. +...|++++|++.++++++-|.
T Consensus 491 ~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 491 ISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 2222 4556555543 4678999999999999976663
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.12 E-value=3.5 Score=35.64 Aligned_cols=153 Identities=13% Similarity=0.022 Sum_probs=99.3
Q ss_pred hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356 244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323 (462)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p 323 (462)
-.+.|++++|.+.|+.+.....- + +-...+--.++.++.+.+++++|+...++. +...+-.|
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~-s-------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF----i~lyP~~~ 105 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPF-S-------------PYSEQAQLDLAYAYYKNGEYDLALAYIDRF----IRLYPTHP 105 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCC-C-------------cccHHHHHHHHHHHHhcccHHHHHHHHHHH----HHhCCCCC
Confidence 34789999999999999866432 1 123455566777899999999999999985 33444455
Q ss_pred chhHHHHHHHHHHhc-------CCcchHHHHhccCC---C--CCcc------c-----------h-HHHHHHHHhcCChH
Q 036356 324 NVIVNTVLIDMYAKC-------GSVDLAPMFFDRTL---D--KDVV------M-----------R-SAMTVGYGLHGLGE 373 (462)
Q Consensus 324 ~~~~~~~li~~~~~~-------g~~~~A~~~~~~~~---~--~~~~------~-----------~-~~li~~~~~~~~~~ 373 (462)
|. -|...|.+++.- .|...+..-|..+. + ||.. . + ..+.+-|.+.|.+.
T Consensus 106 n~-dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 106 NA-DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred Ch-hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 43 344444444432 22233333343332 1 3322 1 1 24556788888888
Q ss_pred HHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 374 EGWVLFHHIRKHGIEPR----HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 374 ~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.|..-+++|.+. -|+ ...+-.+..+|...|-.++|.+.-+-+
T Consensus 185 AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 185 AAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 898888888886 232 445667788888888888888776666
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.12 E-value=0.8 Score=43.79 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=56.8
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (462)
..+.|+++.|.++..+ .++...|..|.+...+.|+++-|++.|.+..+ |..|+-.|...|+.+.
T Consensus 328 Al~lg~L~~A~~~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHCT-HHHHHHHCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHH
T ss_pred HHhcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHH
Confidence 3445555555555433 23555666666666666777777666666544 5566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036356 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418 (462)
Q Consensus 375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 418 (462)
-.++.+....+|- ++....++.-.|+.++..+++.+-+
T Consensus 392 L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 392 LSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 5555555554332 4444555555566666666666554
No 230
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.02 E-value=1.2 Score=35.47 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=24.7
Q ss_pred hcCCcchHHHHhccCC--CCCccchHH-HHHHHHhcCChHHHHHHHHHHHH
Q 036356 337 KCGSVDLAPMFFDRTL--DKDVVMRSA-MTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 337 ~~g~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
+.++.+++..+++.+. +|....... -...+...|++.+|..+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4555666666666554 343332221 12334456666666666666554
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=93.98 E-value=0.19 Score=40.05 Aligned_cols=82 Identities=9% Similarity=-0.255 Sum_probs=66.9
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+-..|++++|..+|.-+ ...|..-|..|..++-..+++++|...|......+. -|+..+-
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-----------------~dp~p~f 109 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-----------------NDYRPVF 109 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----------------CCCCccc
Confidence 78899999999999998 444555566666666678999999999999887765 4555555
Q ss_pred HHHHHHHhCCChhHHHHHHHHh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m 160 (462)
....++...|+.+.|...|+..
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHH
Confidence 6788999999999999999985
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.81 E-value=2.6 Score=33.08 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=86.8
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 315 (462)
....++..+.+.+.......+++.+.+.+. .+....+.++..|++.+ .++..+.+..
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-----------------~~~~~~~~li~ly~~~~-~~~ll~~l~~----- 65 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-----------------ENPALQTKLIELYAKYD-PQKEIERLDN----- 65 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-----------------cchhHHHHHHHHHHHHC-HHHHHHHHHh-----
Confidence 345667777777888889999998887762 46667888888888764 3444444431
Q ss_pred HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHhHH
Q 036356 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLH-GLGEEGWVLFHHIRKHGIEPRHQHY 394 (462)
Q Consensus 316 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~ 394 (462)
..+......+++.|.+.+.++++..++.++.. |...+..+... ++++.|.+++.+- -+...|
T Consensus 66 ------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw 128 (140)
T smart00299 66 ------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELW 128 (140)
T ss_pred ------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHH
Confidence 12334444578888888888888888887744 44455555555 7888888877752 256677
Q ss_pred HHHHHHHHh
Q 036356 395 ARVVDLLAR 403 (462)
Q Consensus 395 ~~li~~~~~ 403 (462)
..++..+..
T Consensus 129 ~~~~~~~l~ 137 (140)
T smart00299 129 AEVLKALLD 137 (140)
T ss_pred HHHHHHHHc
Confidence 777776654
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.77 E-value=0.94 Score=39.40 Aligned_cols=114 Identities=10% Similarity=0.135 Sum_probs=73.6
Q ss_pred CCHhHHHHHHHHHHcC-----CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCcc
Q 036356 283 PNVTLWNAMISGYAKN-----GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV 357 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 357 (462)
.|-.+|-..+..+... +.++-....++. |.+.|+.-|..+|+.|++.+-+..-.-
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~-----m~eyGVerDl~vYk~LlnvfPKgkfiP--------------- 124 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKY-----MKEYGVERDLDVYKGLLNVFPKGKFIP--------------- 124 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-----HHHhcchhhHHHHHHHHHhCccccccc---------------
Confidence 4455555555555432 334444444444 788999999999999998876533221
Q ss_pred chHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChH-HHHHHHHhC
Q 036356 358 MRSAMTVGYGLH-GLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSN-HAFKFIMNM 417 (462)
Q Consensus 358 ~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 417 (462)
-|.+-..+..- .+-+-++++++.|...|+.||..+-..|+++|.+.+-.- +..++.-.|
T Consensus 125 -~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 125 -QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred -HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 11222222211 233668999999999999999999999999999988643 334444344
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.48 E-value=6.4 Score=36.53 Aligned_cols=165 Identities=14% Similarity=0.043 Sum_probs=98.1
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc---CCChhHHHHHhhHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK---NGYAEEAVKLFPKW 311 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~ 311 (462)
.+...++-+|....+++...++.+.+...-... +.-....-.-..-++.+ .|+.++|++++..
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~-------------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~- 207 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-------------VANQHNIKFQYAFALNRRNKPGDREKALQILLP- 207 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-------------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHH-
Confidence 334456667888999999999999887642100 00111111223335556 8999999999988
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHh----c-----CCcchHHHHhccCCCCCccchH--HHHHHHHhcCCh----HHHH
Q 036356 312 MDYYIGKSEYRNNVIVNTVLIDMYAK----C-----GSVDLAPMFFDRTLDKDVVMRS--AMTVGYGLHGLG----EEGW 376 (462)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~li~~~~~----~-----g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~~----~~a~ 376 (462)
.....-.++..+|..+...|.. . ...++|...|.+.-+-+...|+ .+...+...|.- .+..
T Consensus 208 ----~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 208 ----VLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred ----HHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHH
Confidence 3445566778899888877653 1 2356777777766543333332 222233333322 2333
Q ss_pred HHH---HHHH-HCCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 377 VLF---HHIR-KHGIEPRHQ---HYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 377 ~~~---~~m~-~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
++- ..+. +.|..-+.. -+.+++.+..-.|+.++|.+..++|
T Consensus 284 ~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 284 KIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333 2222 234333322 3467888888899999999999988
No 235
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=6.9 Score=36.29 Aligned_cols=282 Identities=10% Similarity=-0.033 Sum_probs=152.2
Q ss_pred HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC
Q 036356 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 170 (462)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 170 (462)
..+.+..++..|+..+....+..+ -+..-|..=...+..-|++++|.--.+.- ..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~p-----------------d~a~yy~nRAa~~m~~~~~~~a~~dar~~-------~r~ 112 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCP-----------------DNASYYSNRAATLMMLGRFEEALGDARQS-------VRL 112 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCc-----------------cchhhhchhHHHHHHHHhHhhcccchhhh-------eec
Confidence 344455667778888888877765 34455555555666666666665544332 111
Q ss_pred CCC-chHHHHHHHHHHhcCCcccHHHHhh---------------ccCC-----CCcchHHHHH-HHHHhCc--hHHHHHH
Q 036356 171 RNN-VIVNTVLIDMYAKCGSVDLAPMFFD---------------RTLD-----KDVVMRSAMI-VGYGLHE--WSAFGSF 226 (462)
Q Consensus 171 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~---------------~m~~-----~~~~~~~~li-~~~~~~~--~~a~~~~ 226 (462)
+|. ...+.-.-+++...++..+|...++ .... |-..+|-.+- .++...+ .+|...-
T Consensus 113 kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 113 KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 111 1122222223333333333332222 2111 1222232221 2233333 5555555
Q ss_pred Hhhhc-CCcchHHHHHHhhc--CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhH
Q 036356 227 DGLLS-NEENEYGTALDCSC--DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEE 303 (462)
Q Consensus 227 ~~m~~-~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~ 303 (462)
-..++ .....+...+++.+ -.++.+.+...|++.++.+ |+...-...-..+ .-...|..=-.-..+.|++.+
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~---k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMP---KKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhH---HHHHHHHhhhhhHhhccchhH
Confidence 55555 33344445554443 5677888888888776643 2222111111110 001122222334668999999
Q ss_pred HHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCcc-chHHHH--HHHHhcCChHHHHHHHH
Q 036356 304 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV-MRSAMT--VGYGLHGLGEEGWVLFH 380 (462)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li--~~~~~~~~~~~a~~~~~ 380 (462)
|.+.+.+.+. +...+..|+...|.....+..+.|+..+|+.--++...-|.. ++..+. .++...+++++|++-++
T Consensus 268 A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 268 AYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998664 445566777778888888888999999998877777654433 233333 33445678899999998
Q ss_pred HHHHCCCCCC-HhHHHHHHHHHHh
Q 036356 381 HIRKHGIEPR-HQHYARVVDLLAR 403 (462)
Q Consensus 381 ~m~~~g~~p~-~~~~~~li~~~~~ 403 (462)
...+....+. ..++.-...++-+
T Consensus 346 ~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 346 KAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHhhccccchHHHHHHHHHHHHH
Confidence 8877544443 3455544445443
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.19 E-value=0.37 Score=45.18 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=55.3
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH----QHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+...|+.+..+|...|++++|+..|++..+ +.|+. .+|..+..+|...|+.++|+..+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455788999999999999999999999998 78884 35899999999999999999999998
No 237
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=3.9 Score=37.81 Aligned_cols=162 Identities=11% Similarity=-0.040 Sum_probs=89.5
Q ss_pred CCHhHHHHH-HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH--HHhcCCcchHHHHhccCCCCCccch
Q 036356 283 PNVTLWNAM-ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM--YAKCGSVDLAPMFFDRTLDKDVVMR 359 (462)
Q Consensus 283 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~ 359 (462)
|...+|-.+ ..++...|+.++|.+.-.+. .+.. ....+...+++ +--.++.+.|..-|++....|....
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~i-----lkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~ 237 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDI-----LKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQ 237 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHH-----Hhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhh
Confidence 444444443 23455667777777766552 1111 12233333433 2235667777777776664222211
Q ss_pred ---------------HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036356 360 ---------------SAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIE 420 (462)
Q Consensus 360 ---------------~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 420 (462)
.-=..-..+.|++..|.+.+.+.+.. ++.|+...|.-...+..+.|+.++|+.-.++. .+.
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 11122345677888888888887763 34444556666666777888888888877776 443
Q ss_pred CCH-HHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 421 LRL-SVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 421 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
|.. ..+..-..++...+++++|++.+.+.++.
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 321 12223334455557777777777765543
No 238
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.92 E-value=0.6 Score=41.16 Aligned_cols=82 Identities=7% Similarity=0.012 Sum_probs=67.5
Q ss_pred hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164 (462)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (462)
++..++..+...|+++.+...++++....+ -+...|..+|.+|.+.|+...|+..|+++....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-----------------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-----------------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-----------------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 455567777778888888888888888765 788899999999999999999999999985445
Q ss_pred hhhcCCCCCchHHHHHHHH
Q 036356 165 IGKSEYRNNVIVNTVLIDM 183 (462)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~ 183 (462)
....|+.|...+.......
T Consensus 218 ~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 218 AEELGIDPAPELRALYEEI 236 (280)
T ss_pred hhhcCCCccHHHHHHHHHH
Confidence 5678999988887776666
No 239
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.90 E-value=2 Score=33.66 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=9.4
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 036356 366 YGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~ 384 (462)
+...|++++|.++|++..+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3344555555555555544
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.76 E-value=0.41 Score=44.90 Aligned_cols=62 Identities=11% Similarity=-0.053 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHhcCCcchHHHHhccCC--CCCcc----chHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVV----MRSAMTVGYGLHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (462)
+...++.+..+|.+.|++++|...|++.. .|+.. +|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788999999999999999999999866 46543 5899999999999999999999999984
No 241
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.11 E-value=0.65 Score=39.35 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCChHHHHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYARVVDLLARAGYSNHAFK 412 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~ 412 (462)
.+.+-|.+.|.+..|..-++.+.+. -|+ ......++.+|.+.|..+.|..
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 3567788999999999999999985 344 4566888899999998885543
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=2.6 Score=37.80 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=104.6
Q ss_pred CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch
Q 036356 246 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 325 (462)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~ 325 (462)
-.|+..+|-..++.+.+.- +.|...++..-+++.-.|+.+.-...+++.+. ...|+.
T Consensus 115 ~~g~~h~a~~~wdklL~d~-----------------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip------~wn~dl 171 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-----------------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP------KWNADL 171 (491)
T ss_pred ccccccHHHHHHHHHHHhC-----------------chhhhhhhhhhhHHHhccchhhhhhHHHHhcc------ccCCCC
Confidence 3567777777788777753 46888888888999999999988888887432 234444
Q ss_pred hHHH----HHHHHHHhcCCcchHHHHhccCCCCCc-cch--HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHH
Q 036356 326 IVNT----VLIDMYAKCGSVDLAPMFFDRTLDKDV-VMR--SAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYA 395 (462)
Q Consensus 326 ~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~ 395 (462)
..|. .+.-++..+|-+++|++.-++..+-|. .+| .++...+-..|+..++.++..+-... +.-.-...|-
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW 251 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW 251 (491)
T ss_pred cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence 3332 233345679999999999998876433 344 45666677789999999888775543 2222245566
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 036356 396 RVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m 417 (462)
...-.+...+.++.|+++|+.-
T Consensus 252 H~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHH
Confidence 6666677889999999999864
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.72 E-value=1 Score=34.30 Aligned_cols=135 Identities=17% Similarity=0.119 Sum_probs=75.7
Q ss_pred HHHHH--HHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC-CCcc---hHHHHH
Q 036356 139 AMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVV---MRSAMI 212 (462)
Q Consensus 139 ~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~---~~~~li 212 (462)
.|+.+ +.-.|.+++..++..+. ..+ .+..-||-+|--....-+-+-..++++.+-+ -|.. ..-.++
T Consensus 5 kLmeAK~~ildG~V~qGveii~k~-----v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi 76 (161)
T PF09205_consen 5 KLMEAKERILDGDVKQGVEIIEKT-----VNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVI 76 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----HHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHH-----cCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHH
Confidence 34444 45578888888888886 221 1233444444444444455555666655442 1211 223455
Q ss_pred HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356 213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292 (462)
Q Consensus 213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li 292 (462)
.+|...+ .+...+...+..+...|.-+.-.+++..+.+.+ +++....-.+.
T Consensus 77 ~C~~~~n------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-----------------~~~p~~L~kia 127 (161)
T PF09205_consen 77 ECYAKRN------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-----------------EINPEFLVKIA 127 (161)
T ss_dssp HHHHHTT---------------HHHHHHHHHHHHTT-HHHHHHHHHHH----------------------S-HHHHHHHH
T ss_pred HHHHHhc------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-----------------CCCHHHHHHHH
Confidence 5555544 344455666777778888888888888877643 37777777888
Q ss_pred HHHHcCCChhHHHHHhhH
Q 036356 293 SGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~ 310 (462)
.+|.+.|+..++.+++.+
T Consensus 128 ~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 128 NAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHH
Confidence 888888888888888877
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=91.49 E-value=0.47 Score=37.92 Aligned_cols=89 Identities=9% Similarity=-0.052 Sum_probs=69.6
Q ss_pred HhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC
Q 036356 91 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 170 (462)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 170 (462)
.-+-..|++++|..+|.-+...++ -|..-|..|..++-..+++++|+..|..- ....
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-----------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A-----~~l~- 101 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-----------------YNPDYTMGLAAVCQLKKQFQKACDLYAVA-----FTLL- 101 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHcc-
Confidence 334578999999999999998876 66667888888899999999999999874 2222
Q ss_pred CCCchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356 171 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 202 (462)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (462)
.-|...+--...+|...|+.+.|...|+....
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 23444455578889999999999999887664
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.33 E-value=1.7 Score=35.78 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhcCCcchHHHHhccCCCCC------ccchHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHHH
Q 036356 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKD------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYAR 396 (462)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ 396 (462)
..+..+.+-|++.|+.+.|.+.|.++.+.. ...+-.+|+...-.+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 455666666777777777777777665422 123445566666666776666666655543 22122222112
Q ss_pred HHHH--HHhcCChHHHHHHHHhC
Q 036356 397 VVDL--LARAGYSNHAFKFIMNM 417 (462)
Q Consensus 397 li~~--~~~~g~~~~A~~~~~~m 417 (462)
...+ +...|++.+|-+.|-+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 2222 23356666666666666
No 246
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.08 E-value=3.5 Score=32.36 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=65.7
Q ss_pred HHhhCCCCch--hHHHHHHHHHHhcCCcchHHHHhccCC---------CCCccchHHHHHHHHhcCC-hHHHHHHHHHHH
Q 036356 316 IGKSEYRNNV--IVNTVLIDMYAKCGSVDLAPMFFDRTL---------DKDVVMRSAMTVGYGLHGL-GEEGWVLFHHIR 383 (462)
Q Consensus 316 ~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~ 383 (462)
|.+.+..++. ...|+++.-....++......+++.+. ..+..+|.+++.+.++..- --.+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 5556666664 446777777777777777777777664 2466788899999876665 445667888888
Q ss_pred HCCCCCCHhHHHHHHHHHHhc
Q 036356 384 KHGIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 384 ~~g~~p~~~~~~~li~~~~~~ 404 (462)
+.+.+++..-|..++.++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 888889999999999988765
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.01 E-value=2.2 Score=40.89 Aligned_cols=132 Identities=13% Similarity=0.031 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 364 (462)
....+.+++.+-+.|.++.|+++-.+ |+ .=.+...+.|+++.|.++.++.. +...|..|..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D------------~~-----~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~ 355 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD------------PD-----HRFELALQLGNLDIALEIAKELD--DPEKWKQLGD 355 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-------------HH-----HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC------------hH-----HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHH
Confidence 45588899999999999999999876 21 12445568999999999988775 5669999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENML 444 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~ 444 (462)
...+.|+++-|++.|.+..+ |..|+-.|...|+.+.-.++.+..... .-++.-+.++...|+.++-+.
T Consensus 356 ~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~---~~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 356 EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER---GDINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT---T-HHHHHHHHHHHT-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc---cCHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988664 577777888888887777776655111 114455555555566665554
Q ss_pred HHH
Q 036356 445 QTI 447 (462)
Q Consensus 445 ~~~ 447 (462)
.+.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.94 E-value=0.74 Score=27.61 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=16.6
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 390 (462)
|..+...|...|++++|.++|++..+ ..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA--LDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 44455555555666666666555555 4444
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.82 E-value=2.4 Score=37.49 Aligned_cols=83 Identities=7% Similarity=0.047 Sum_probs=70.5
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 314 (462)
.++..++..+...|+.+.+...++.+.... +-+...|..+|.+|.+.|+...|+..|+++-.-
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-----------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-----------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-----------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345667788888899999999999998864 358899999999999999999999999987666
Q ss_pred HHHhhCCCCchhHHHHHHHH
Q 036356 315 YIGKSEYRNNVIVNTVLIDM 334 (462)
Q Consensus 315 ~~~~~~~~p~~~~~~~li~~ 334 (462)
.+.+.|+.|...+.......
T Consensus 217 ~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 217 LAEELGIDPAPELRALYEEI 236 (280)
T ss_pred hhhhcCCCccHHHHHHHHHH
Confidence 67889999999888777666
No 250
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=20 Score=36.24 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=90.0
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC---CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHh
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN---NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 217 (462)
|+-+.+.+.+++|+..-+. ..|..| -..+....|+.+...|++++|-...-.|...+..-|...+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~-------~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKA-------SIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHh-------ccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc
Confidence 5677888899999988876 344455 345677888999999999999999888888777777777766666
Q ss_pred Cc--hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc-----CCCCHhHHH
Q 036356 218 HE--WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-----YQPNVTLWN 289 (462)
Q Consensus 218 ~~--~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~ 289 (462)
.+ .....+.-.-.. .+...|..++..+.. .+. ..+++...+ .+++...-...+++.. ..-+...-.
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~--Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e 509 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKE--WPGHLYSVLTIISATEPQIKQNSESTALLE 509 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHh--CChhhhhhhHHHhhcchHHHhhccchhHHH
Confidence 55 222222111111 234556666665554 111 111221111 1222222222222211 111222233
Q ss_pred HHHHHHHcCCChhHHHHHh
Q 036356 290 AMISGYAKNGYAEEAVKLF 308 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~ 308 (462)
.|...|...++++.|++++
T Consensus 510 ~La~LYl~d~~Y~~Al~~y 528 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIY 528 (846)
T ss_pred HHHHHHHHccChHHHHHHH
Confidence 4777888889999998887
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.70 E-value=8 Score=33.22 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWM 312 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~ 312 (462)
..|..-..+|...+++++|...+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345555667888888888888776643
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.39 E-value=18 Score=35.16 Aligned_cols=189 Identities=14% Similarity=0.024 Sum_probs=119.0
Q ss_pred HHHHHHHhCc-hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356 210 AMIVGYGLHE-WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288 (462)
Q Consensus 210 ~li~~~~~~~-~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (462)
.-+......| .-...+|.-+...=.-.+..+++...=.|+-+.+++.+....+.+-.-.+..-- -...|
T Consensus 163 ~~~d~~~~sgv~~G~G~f~L~lSlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L----------~LL~y 232 (468)
T PF10300_consen 163 KPIDEFFESGVYFGFGLFNLVLSLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAAL----------VLLWY 232 (468)
T ss_pred chhHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHH----------HHHHH
Confidence 3455555666 444555555555112345567777777789999999888876633211111111 11234
Q ss_pred HHHHHHHHc----CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH-HHHHHhcCCcchHHHHhccCCC-------CCc
Q 036356 289 NAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL-IDMYAKCGSVDLAPMFFDRTLD-------KDV 356 (462)
Q Consensus 289 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-------~~~ 356 (462)
..++..++. ....+.|.+++..+. ..-|+...|... .+.+...|++++|.+.|++... -..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~a~~lL~~~~-------~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~ 305 (468)
T PF10300_consen 233 HLVVPSFLGIDGEDVPLEEAEELLEEML-------KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHH 305 (468)
T ss_pred HHHHHHHcCCcccCCCHHHHHHHHHHHH-------HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHH
Confidence 444444433 456788999988842 334776666544 3456779999999999997552 233
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCh-------HHHHHHHHhC
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL--LARAGYS-------NHAFKFIMNM 417 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~-------~~A~~~~~~m 417 (462)
.++--+...+....++++|.+.|..+.+. ......+-..+.+ +...|+. ++|.++|++.
T Consensus 306 l~~~El~w~~~~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 306 LCYFELAWCHMFQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHHHHchHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 45556777788899999999999999984 3334444333333 3456777 8888888887
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.38 E-value=1.9 Score=33.67 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=40.4
Q ss_pred HHhcCCcchHHHHhccCCC--C----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcC
Q 036356 335 YAKCGSVDLAPMFFDRTLD--K----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAG 405 (462)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g 405 (462)
..+.|++++|.+.|+.+.. | .....-.|+.+|.+.+++++|...+++.++ +.|+ ..-|...+.+++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHHH
Confidence 3455677777777776653 1 112334566777777777777777777776 4454 234555555555443
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=1 Score=41.41 Aligned_cols=76 Identities=14% Similarity=0.036 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAW 433 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~ 433 (462)
..++..|.-+|.+.+++..|++...+.+. +.|+ ....-.=..+|...|+++.|...|+++ .+.|+...-..=+..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34567778888888888888888888877 4454 677777778888888888888888888 6677666554444333
No 255
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.92 E-value=12 Score=33.82 Aligned_cols=30 Identities=7% Similarity=0.236 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHH
Q 036356 150 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184 (462)
Q Consensus 150 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~ 184 (462)
+++.+.+++.| .+.|++-+..+|-+..-..
T Consensus 78 ~~~~~~~y~~L-----~~~gFk~~~y~~laA~~i~ 107 (297)
T PF13170_consen 78 FKEVLDIYEKL-----KEAGFKRSEYLYLAALIIL 107 (297)
T ss_pred HHHHHHHHHHH-----HHhccCccChHHHHHHHHH
Confidence 44456677776 8899999888776544433
No 256
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.91 E-value=0.41 Score=26.89 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=17.7
Q ss_pred CCCC-HhHHHHHHHHHHhcCChHHHH
Q 036356 387 IEPR-HQHYARVVDLLARAGYSNHAF 411 (462)
Q Consensus 387 ~~p~-~~~~~~li~~~~~~g~~~~A~ 411 (462)
+.|+ ...|.-+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5565 667777777777777777765
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.82 E-value=0.65 Score=26.41 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh
Q 036356 394 YARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555544
No 258
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.77 E-value=16 Score=34.99 Aligned_cols=160 Identities=13% Similarity=0.070 Sum_probs=106.5
Q ss_pred cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158 (462)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (462)
...|....-+++..++......-.+.+..+|...|- +-..|-.++..|..+ .-+.-..+|+
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e------------------~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE------------------SKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc------------------hHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 455677788899999999999999999999998875 677888889999888 5667777887
Q ss_pred HhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC------Cc---chHHHHHHHHHhCchHHHHHHHhh
Q 036356 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK------DV---VMRSAMIVGYGLHEWSAFGSFDGL 229 (462)
Q Consensus 159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~---~~~~~li~~~~~~~~~a~~~~~~m 229 (462)
++ .+..+ .|++.-..|...|-+ ++...+..+|.+...+ +. ..|.-++.-.....+..+.+...+
T Consensus 123 r~-----ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~ki 195 (711)
T COG1747 123 RL-----VEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKI 195 (711)
T ss_pred HH-----HHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 65 33332 344444556665555 7777777777665421 11 135444432222225555555555
Q ss_pred hc-----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhC
Q 036356 230 LS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLG 264 (462)
Q Consensus 230 ~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 264 (462)
.. .-...+--+-.-|....++++|.+++..+.++.
T Consensus 196 qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 196 QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 44 223344445567888899999999999888775
No 259
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.52 E-value=10 Score=34.27 Aligned_cols=146 Identities=7% Similarity=0.006 Sum_probs=82.2
Q ss_pred ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh--cC----CcchHHHHhccCCC-------CCccchHHHHHHH
Q 036356 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK--CG----SVDLAPMFFDRTLD-------KDVVMRSAMTVGY 366 (462)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~ 366 (462)
+++++.+-+-. +.+.+.+.|++-+..+|-+..-.... .. ...+|..+|+.|++ ++-.++..|+..
T Consensus 73 ~p~~~~~~~~~-~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~- 150 (297)
T PF13170_consen 73 DPEEAFKEVLD-IYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM- 150 (297)
T ss_pred CHHHHHHHHHH-HHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc-
Confidence 36665554433 22337888998888777654333333 22 24578899999984 455566666554
Q ss_pred HhcCCh----HHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCC---hHHHHHHHHhC---CCCCCHHHHHHHHHHHHc
Q 036356 367 GLHGLG----EEGWVLFHHIRKHGIEPRHQ-HYARVVDLLARAGY---SNHAFKFIMNM---PIELRLSVRRALLSAWKI 435 (462)
Q Consensus 367 ~~~~~~----~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~ 435 (462)
...+. +.++.+++.+.+.|+..+.. -+.+-+-++..... ..++.++++.+ ++++....|..+.--..-
T Consensus 151 -~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 151 -TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred -ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence 33333 67788899999988888633 33333334443322 23556666666 666666666554433333
Q ss_pred cCChHHHHHHHHh
Q 036356 436 PMQQWENMLQTIR 448 (462)
Q Consensus 436 ~~~~~~a~~~~~~ 448 (462)
.+..++.+..+.+
T Consensus 230 ~~~~~~~~~~i~e 242 (297)
T PF13170_consen 230 EDPEEKIVEEIKE 242 (297)
T ss_pred CCchHHHHHHHHH
Confidence 3333244444433
No 260
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=3.8 Score=37.81 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=86.3
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCC---------chhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchH
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN---------NVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRS 360 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 360 (462)
..|.+.|++..|..-|++.+...-...+..+ -..++..+.-+|.+.+++..|...-+... .+|+...-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3578889999998888775432211222222 23456667778889999999988877655 46777666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCChHH-HHHHHHhC
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL-ARAGYSNH-AFKFIMNM 417 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~-A~~~~~~m 417 (462)
.=..+|...|+++.|...|+++++ +.|+...-..=+..| .+..+..+ ..++|..|
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999 999866655444444 34444433 46677777
No 261
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.09 E-value=5.5 Score=35.18 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=90.6
Q ss_pred ehhhhccCCChhhHHHHHHhh-----cCCCcchHHHHHHhhcC-cc-chhhHHHHHHHHHHh-cCCcchhHHHHHhhhcC
Q 036356 58 LDLYHLWSRTEWSAFGSFDGL-----LSNEENEYGTALDCSCD-LE-FLEQGKIVHGFMIKL-GLELESDLLISLTAVCR 129 (462)
Q Consensus 58 ~~~~~~~~~~~~~A~~~~~~m-----~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~m~~~-g~~~~~~~l~~~~~~~~ 129 (462)
|..+-.++....+|+.+|+.. +-.|..+...+++.... .+ ....-.++.+.+... |-
T Consensus 134 Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~--------------- 198 (292)
T PF13929_consen 134 YWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSK--------------- 198 (292)
T ss_pred HHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhcccc---------------
Confidence 555555566677888888854 44577777778877764 22 344444555555533 22
Q ss_pred CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhc
Q 036356 130 YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199 (462)
Q Consensus 130 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (462)
.++..+-..+|..+++.+++..-.++++.- +...+..-|...|..+|+.-...||..-..++.++
T Consensus 199 -~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~----~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 -SLTRNVIISILEILAESRDWNKLFQFWEQC----IPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred -CCChhHHHHHHHHHHhcccHHHHHHHHHHh----cccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 588888999999999999999999999985 23335677899999999999999999988888875
No 262
>PRK11906 transcriptional regulator; Provisional
Probab=88.81 E-value=9.6 Score=36.19 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=104.4
Q ss_pred hHH--HHHHHHHHcCC-----ChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHh---------cCCcchHHHHh
Q 036356 286 TLW--NAMISGYAKNG-----YAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAK---------CGSVDLAPMFF 348 (462)
Q Consensus 286 ~~~--~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~ 348 (462)
..| ..++.+..... ..+.|+.+|.+.+ ..+...|+ ...|..+..++.. ..+..+|.++-
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~----~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQ----NKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHh----hcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 456 55666655422 3567888888742 23456665 3444444333322 12234555665
Q ss_pred ccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-
Q 036356 349 DRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR- 422 (462)
Q Consensus 349 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 422 (462)
+...+ .|......+..+....++++.|...|++... +.|| ..+|........-.|+.++|.+.+++. ...|.
T Consensus 328 ~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 328 DYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 55543 4666666777777888889999999999998 8898 567777777778899999999999994 55564
Q ss_pred --HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 423 --LSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 423 --~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
.......+..|+..+ .++|+..+++.
T Consensus 406 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 406 RKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred hHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 445556666788775 46788777654
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.68 E-value=5.7 Score=36.13 Aligned_cols=118 Identities=8% Similarity=0.004 Sum_probs=56.5
Q ss_pred HHHHHHhcCCcchHHHHhccCC-------CC--CccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHhHH---
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTL-------DK--DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPRHQHY--- 394 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~--- 394 (462)
+-.++.-.+.++++.+-|+... +| ....+..|-..|.+..|+++|.-+..+..+. ++.--..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3344444445555555555432 11 2335566666666666666666554443332 211111112
Q ss_pred --HHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 395 --ARVVDLLARAGYSNHAFKFIMNM-------PIEL-RLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 395 --~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
-.+.-++-..|++-.|.+..++. |-.| -......+...|...|+.+.|..-+++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22333455566665555555553 2222 122334566666666666666554444
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.61 E-value=0.86 Score=25.90 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=20.7
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
+|+.|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788888888999999888888543
No 265
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=31 Score=34.88 Aligned_cols=309 Identities=12% Similarity=-0.046 Sum_probs=172.7
Q ss_pred hccCCChhhHHHHHHhhcCCC---cchHHHHHHhhcCccchhhHHHHHHHHHHh-cCCcchhHHHHHhhhcCCCCCeeeH
Q 036356 62 HLWSRTEWSAFGSFDGLLSNE---ENEYGTALDCSCDLEFLEQGKIVHGFMIKL-GLELESDLLISLTAVCRYQPNVTLR 137 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~l~~~~~~~~~~p~~~~~ 137 (462)
+...+.+..|+.+-+.+.-|. ...|.....-+.+..+.. -..+++.+.+. +. +.-...+|
T Consensus 447 l~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~---------------~~~~~iSy 510 (829)
T KOG2280|consen 447 LVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSA---------------KLTPGISY 510 (829)
T ss_pred HHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcc---------------cCCCceeH
Confidence 777788899999988882222 556666666665553221 22233333221 11 01355778
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC----CCchHHHHHHHHHHhcCCcccHHHHhhccCCC-CcchHHH--
Q 036356 138 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR----NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSA-- 210 (462)
Q Consensus 138 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~-- 210 (462)
..+...--..|+.+-|..+++.= .+.+.+ .+..-+...+.-..+.||.+....++-.+.+. +...+..
T Consensus 511 ~~iA~~Ay~~GR~~LA~kLle~E-----~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 511 AAIARRAYQEGRFELARKLLELE-----PRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred HHHHHHHHhcCcHHHHHHHHhcC-----CCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999998763 222211 12334555666677778888777776655421 1111111
Q ss_pred --------HHHHHHhCc--------------hHHHHHHH--hhhc-----CCcchHHHHHHhhcCccchhhhHHHHHHHH
Q 036356 211 --------MIVGYGLHE--------------WSAFGSFD--GLLS-----NEENEYGTALDCSCDLEFLEQGKIVHGFMI 261 (462)
Q Consensus 211 --------li~~~~~~~--------------~~a~~~~~--~m~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 261 (462)
+-.-|++.. ..++..|. .... +-........+++.+.....-..+..++-.
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 111122211 11111111 1000 111112223333433333211111111110
Q ss_pred HhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCc
Q 036356 262 KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 341 (462)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 341 (462)
+. .....+|=..+|..-...+.+--+.-+...|+..+|.++-.+. --||-..|-.=+.+++..+++
T Consensus 666 kL-----l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F---------kipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 666 KL-----LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF---------KIPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred HH-----HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc---------CCcchhhHHHHHHHHHhhhhH
Confidence 00 0000000000112233344455566677789999998886652 247888888889999999999
Q ss_pred chHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 342 DLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 342 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
++-+++-+..+. +.-|.-++.+|.+.|+.++|.+++-+... . . -.+.+|.+.|++.+|.++--+
T Consensus 732 eeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~--l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 732 EELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGG--L---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCC--h---H----HHHHHHHHhccHHHHHHHHHH
Confidence 988888777655 67788999999999999999988876442 1 1 577888899999888776443
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=4.6 Score=35.67 Aligned_cols=146 Identities=14% Similarity=0.048 Sum_probs=90.3
Q ss_pred HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC-CccchH---HHHHHH
Q 036356 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRS---AMTVGY 366 (462)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~---~li~~~ 366 (462)
-.......|+..+|..+|...+. ... -+...--.+..+|...|+.+.|..++..+... ...-|. .=|..+
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~-----~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQ-----AAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHH-----hCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34567788888888888888532 111 12344556778888889999999999888732 111222 223444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCChHH
Q 036356 367 GLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM----PIELRLSVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~~~ 441 (462)
.+.....+...+-.+.-. .| |...-..+...+...|+.++|.+.+=.+ .-.-|...-..|+..+.--|..+.
T Consensus 214 ~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 214 EQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 455555544444444443 46 4666667778888888888888755444 123455666777777777775554
Q ss_pred HHHH
Q 036356 442 NMLQ 445 (462)
Q Consensus 442 a~~~ 445 (462)
+...
T Consensus 291 ~~~~ 294 (304)
T COG3118 291 LVLA 294 (304)
T ss_pred HHHH
Confidence 4433
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.27 E-value=0.75 Score=27.57 Aligned_cols=31 Identities=6% Similarity=-0.055 Sum_probs=27.4
Q ss_pred chHHHHHHhhcCccchhhHHHHHHHHHHhcC
Q 036356 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 114 (462)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 114 (462)
.++..+...+.+.|++++|.++|++..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3577888999999999999999999999865
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.26 E-value=22 Score=33.13 Aligned_cols=82 Identities=11% Similarity=-0.012 Sum_probs=55.0
Q ss_pred HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHh---CCChhHHHHHHHHhhh
Q 036356 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK---NGYAEEAVKLFPKWMD 162 (462)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~ 162 (462)
...++-+|....+++...++++.+...... . ..-+..+--...-++.+ .|+.++|++++...
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~--~-----------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~-- 208 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTC--D-----------VANQHNIKFQYAFALNRRNKPGDREKALQILLPV-- 208 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCcc--c-----------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH--
Confidence 344455688888999999999999875320 0 01112222234455666 89999999999885
Q ss_pred hhhhhcCCCCCchHHHHHHHHHH
Q 036356 163 YYIGKSEYRNNVIVNTVLIDMYA 185 (462)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~~~ 185 (462)
....-.++..+|..+.+.|-
T Consensus 209 ---l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 209 ---LESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred ---HhccCCCChHHHHHHHHHHH
Confidence 45666778888887777774
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.91 E-value=13 Score=30.12 Aligned_cols=91 Identities=9% Similarity=0.047 Sum_probs=54.6
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc----hHHHHHHHhhhcCCcchHHHHH
Q 036356 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE----WSAFGSFDGLLSNEENEYGTAL 241 (462)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~----~~a~~~~~~m~~~~~~~~~~ll 241 (462)
...+++|+...|..+++.+.+.|++.....++.--.-+|.......+-.+.... .-|++.+.++. ..+..++
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~ii 96 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEII 96 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHH
Confidence 567788888888888888888888877777766544344443333333332222 44555555442 2344555
Q ss_pred HhhcCccchhhhHHHHHHH
Q 036356 242 DCSCDLEFLEQGKIVHGFM 260 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~ 260 (462)
+.+...|++-+|.++....
T Consensus 97 evLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 97 EVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHhCCCHHHHHHHHHHc
Confidence 5666667777776666543
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.64 E-value=1.3 Score=42.92 Aligned_cols=109 Identities=13% Similarity=-0.005 Sum_probs=79.8
Q ss_pred CCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh----hccCCChhhHHHHHHhh-------cCCCcchHHHHHHh
Q 036356 24 PSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY----HLWSRTEWSAFGSFDGL-------LSNEENEYGTALDC 92 (462)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~m-------~~~~~~~~~~ll~~ 92 (462)
.+.+.|.++++.+.+.- |+...|... +...|+.++|++.|+.. .+.....+--+.-+
T Consensus 247 ~~~~~a~~lL~~~~~~y------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC 314 (468)
T ss_pred CCHHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence 34566777777776653 677777655 88899999999999976 33344456667777
Q ss_pred hcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH-HHhCCCh-------hHHHHHHHHhh
Q 036356 93 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG-YAKNGYA-------EEAVKLFPKWM 161 (462)
Q Consensus 93 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~m~ 161 (462)
+.-..++++|...|..+.+..- -+..+|.-+..+ +...|+. ++|.++|.+..
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s~-----------------WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKESK-----------------WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHchHHHHHHHHHHHHhccc-----------------cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8889999999999999998653 455555544444 5567777 88888888863
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.28 E-value=19 Score=31.30 Aligned_cols=59 Identities=12% Similarity=-0.097 Sum_probs=46.7
Q ss_pred eeehhh--hccCCChhhHHHHHHhh---cCC---CcchHHHHHHhhcCccchhhHHHHHHHHHHhcC
Q 036356 56 VFLDLY--HLWSRTEWSAFGSFDGL---LSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 114 (462)
Q Consensus 56 ~~~~~~--~~~~~~~~~A~~~~~~m---~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 114 (462)
..|+.. -.+.|++++|.+.|+.+ .+- ...+--.++.++-+.++++.|...+++..+.-+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 345555 78899999999999999 222 344666777888899999999999999887754
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.25 E-value=6.5 Score=30.09 Aligned_cols=83 Identities=18% Similarity=0.130 Sum_probs=59.2
Q ss_pred HHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH---hHHHHHHHHHHhcCC
Q 036356 334 MYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPRH---QHYARVVDLLARAGY 406 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~li~~~~~~g~ 406 (462)
+++..|+++.|++.|.... ......||.=..++--.|+.++|++=+++..+. |-+ +. ..|..=...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 5677888999988888765 346777888888888888888888888887775 322 22 223333335666788
Q ss_pred hHHHHHHHHhC
Q 036356 407 SNHAFKFIMNM 417 (462)
Q Consensus 407 ~~~A~~~~~~m 417 (462)
.+.|..=|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 88888777766
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.15 E-value=12 Score=30.28 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=74.1
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhH-HHHHHHHHHhcCCcchHHHHhccCCCC--CccchH---HH--HHHH
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV-NTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRS---AM--TVGY 366 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~---~l--i~~~ 366 (462)
+.+.+..++|+.-|.. +.+.|...-+.. -.-........|+...|...|+++-.. -+.... .| ...+
T Consensus 68 lA~~~k~d~Alaaf~~-----lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 68 LAQENKTDDALAAFTD-----LEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHcCCchHHHHHHHH-----HHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 4567778888888887 666665432221 111223456678888888888877531 111111 11 2234
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 367 GLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
..+|.++....-.+-+...+-+.....-..|.-+-.+.|++.+|.++|..+
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 567778877777777666555445556667777777888888888888876
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=36 Score=34.93 Aligned_cols=174 Identities=16% Similarity=0.086 Sum_probs=104.1
Q ss_pred hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC
Q 036356 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 322 (462)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 322 (462)
.+.+.|++++|...|-+-+ |.. .| ..+|.-|....++.+-..+++. +.+.|+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI--~~l---------------e~-----s~Vi~kfLdaq~IknLt~YLe~-----L~~~gla 429 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETI--GFL---------------EP-----SEVIKKFLDAQRIKNLTSYLEA-----LHKKGLA 429 (933)
T ss_pred HHHhcCCHHHHHHHHHHHc--ccC---------------Ch-----HHHHHHhcCHHHHHHHHHHHHH-----HHHcccc
Confidence 3457888888877665443 221 12 2345556666666666666666 5566764
Q ss_pred CchhHHHHHHHHHHhcCCcchHHHHhccCCCCCc-cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 036356 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV-VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL 401 (462)
Q Consensus 323 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 401 (462)
+...-..|+.+|.+.++.++-.+..+...+-.. .-....+..+.+.+-.++|..+-.+... ....... .+
T Consensus 430 -~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---ll 500 (933)
T KOG2114|consen 430 -NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LL 500 (933)
T ss_pred -cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HH
Confidence 344456789999999999988888876652111 1234566777777777777665544332 2222233 34
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356 402 ARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 402 ~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
-..|++++|++.++.+++.--..+.+...+.+... ..++....+.+.....
T Consensus 501 e~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~ 551 (933)
T KOG2114|consen 501 EDLHNYEEALRYISSLPISELLRTLNKYGKILLEH-DPEETMKILIELITEL 551 (933)
T ss_pred HHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhc
Confidence 56789999999999996443344445555555544 3344554454444333
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.29 E-value=16 Score=29.60 Aligned_cols=131 Identities=15% Similarity=-0.003 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHH-----HHHhcCChHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV-----GYGLHGLGEEGWVLFHHIRKHGIEPRHQ-HYARVV 398 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li 398 (462)
...|..-++ +++.+..++|+.-|..+.+.+...|-.|.. .....|+...|...|++.-...-.|-.. -...|=
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444333 466788999999999999888888876643 4667899999999999999865555533 333333
Q ss_pred H--HHHhcCChHHHHHHHHhC--CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCC
Q 036356 399 D--LLARAGYSNHAFKFIMNM--PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKT 456 (462)
Q Consensus 399 ~--~~~~~g~~~~A~~~~~~m--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 456 (462)
. .+...|-+++...-++-+ .-.| ....-.+|.-+-.+.|++..|..+|.+.......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 3 345789999999888888 2222 34455788888999999999998887765544333
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.22 E-value=13 Score=28.55 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=32.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.-+..+...|+-+.-.++..++.+ +-.|++...-.+..+|.+.|+..++.+++.+.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 345666667776776677776654 33466666666777777777777777666654
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.21 E-value=1.2 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=20.6
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 390 (462)
+|..+...|...|++++|+..|++..+ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 456667777777777777777777776 4443
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.21 E-value=43 Score=34.38 Aligned_cols=53 Identities=6% Similarity=0.103 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
--++..+.+..+.+.+..+.+..-+. +...|..++.-|++.+..+.-.+...+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 34566677777777777777666542 677888888888888765555444443
No 279
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.17 E-value=11 Score=33.03 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCCC--CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-HhHHHHHH
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPR-HQHYARVV 398 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li 398 (462)
.|+.-+..| +.|++..|...|....+ |+ ...+--|..++...|+++.|..+|..+.+. +-.|. ...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466555443 45667777777766553 21 123334667777777777777777777765 33333 35666666
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036356 399 DLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~m 417 (462)
....+.|+.++|...++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6777777777777777776
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.03 E-value=14 Score=35.38 Aligned_cols=19 Identities=11% Similarity=0.150 Sum_probs=12.0
Q ss_pred CccchhhhHHHHHHHHHhC
Q 036356 246 DLEFLEQGKIVHGFMIKLG 264 (462)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~ 264 (462)
...-+.++++++++..+.|
T Consensus 212 eA~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 212 EASTIVEAEELLRQAVKAG 230 (539)
T ss_pred cccCHHHHHHHHHHHHHHH
Confidence 3445677777777766654
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.85 E-value=20 Score=30.12 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=24.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 367 GLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
...++.+.+...+.+... ..|+ ...+..+...+...++++.|...+...
T Consensus 178 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 178 EALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 344455555555555554 2222 344445555555555555555555554
No 282
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.42 E-value=3 Score=28.60 Aligned_cols=46 Identities=4% Similarity=0.033 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHH
Q 036356 368 LHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKF 413 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 413 (462)
...+.++|+..|....+.-..|. ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666533332 45666777777777777776653
No 283
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.83 E-value=13 Score=32.46 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCc-hHHHHHHHhhhc--CC----cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc
Q 036356 208 RSAMIVGYGLHE-WSAFGSFDGLLS--NE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR 280 (462)
Q Consensus 208 ~~~li~~~~~~~-~~a~~~~~~m~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (462)
|+.-+..+-... ..|...|....+ |+ ...+-.|..++...|++++|..+|..+.+.--.
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-------------- 210 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-------------- 210 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC--------------
Confidence 555555554444 555555555555 32 334667888889999999999999888875432
Q ss_pred CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356 281 YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312 (462)
Q Consensus 281 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 312 (462)
.+.-....-.+.....+.|+.++|..+|.+.+
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11233566777778888999999999998843
No 284
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.74 E-value=11 Score=31.37 Aligned_cols=79 Identities=6% Similarity=0.035 Sum_probs=47.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC------CCCCCHHHHHHHHHHHHcc
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM------PIELRLSVRRALLSAWKIP 436 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~p~~~~~~~l~~~~~~~ 436 (462)
-....+.|+ +.|.+.|-.+...+.--++.....|..-|. ..+.++|+.++-+. +-.+|+..+.+|...+.+.
T Consensus 114 Yy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 114 YYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 334445555 566666666666555444444444443333 56677777766655 2256677777777777777
Q ss_pred CChHHHH
Q 036356 437 MQQWENM 443 (462)
Q Consensus 437 ~~~~~a~ 443 (462)
|+.+.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 7776664
No 285
>PRK09687 putative lyase; Provisional
Probab=84.71 E-value=29 Score=31.08 Aligned_cols=49 Identities=20% Similarity=0.090 Sum_probs=22.3
Q ss_pred CCCCcchHHHHHHHHHhCc-hHHHHHHHhhhc-CCcchHHHHHHhhcCccc
Q 036356 201 LDKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS-NEENEYGTALDCSCDLEF 249 (462)
Q Consensus 201 ~~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~ 249 (462)
.++|.......+.++...| .++...+..+.. +|...-...+.++.+.|+
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3344444444444444444 444444444433 444444444444444444
No 286
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.59 E-value=19 Score=31.98 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=36.0
Q ss_pred hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC-----CCCccchHHHHHHHHhcCChHHHHHH
Q 036356 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-----DKDVVMRSAMTVGYGLHGLGEEGWVL 378 (462)
Q Consensus 319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~ 378 (462)
.+-.++..+...+++.+++.+++.+-.++|+... ..|...|..+|+.....|+..-..++
T Consensus 196 ~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 196 FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 3445556666666666666666666666666543 23666666666666666665443333
No 287
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.58 E-value=40 Score=32.56 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=110.1
Q ss_pred CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHH
Q 036356 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311 (462)
Q Consensus 232 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 311 (462)
.|.....+++..+...-.+.-.+.+..+|..-| -+-..|..++..|..+ ..+.-..++++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~------------------e~kmal~el~q~y~en-~n~~l~~lWer- 123 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG------------------ESKMALLELLQCYKEN-GNEQLYSLWER- 123 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc------------------chHHHHHHHHHHHHhc-CchhhHHHHHH-
Confidence 455566677777777777777888888887765 5667777888888877 56666777776
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC------Cc---cchHHHHHHHHhcCChHHHHHHHHHH
Q 036356 312 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK------DV---VMRSAMTVGYGLHGLGEEGWVLFHHI 382 (462)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~m 382 (462)
+.+..+ -|++.-.-|..-|.+ ++.+.+...|.+.... +. ..|..|+.. -..+.+..+.+..+.
T Consensus 124 ----~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~ki 195 (711)
T COG1747 124 ----LVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKI 195 (711)
T ss_pred ----HHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 333333 233333444444544 7777777777765421 11 134444432 134567777777777
Q ss_pred HHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHc
Q 036356 383 RKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKI 435 (462)
Q Consensus 383 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~ 435 (462)
... |..--...+.-+-.-|....++++|++++... .-..|.-.-..++..+..
T Consensus 196 qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 196 QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 665 55555666777777888888999999988866 223344444455554444
No 288
>PRK09687 putative lyase; Provisional
Probab=84.15 E-value=31 Score=30.92 Aligned_cols=136 Identities=13% Similarity=0.013 Sum_probs=75.6
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCC-cchHHH-HhccCCCCCccchH
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAPM-FFDRTLDKDVVMRS 360 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~-~~~~~~~~~~~~~~ 360 (462)
++..+-...+.++++.++ +++...+...+ + .++..+-...+.++++.+. ...+.. +...+.++|...-.
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L-----~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~ 210 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLL-----K---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRI 210 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHh-----c---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHH
Confidence 455555566666666665 34555554421 1 2334444455555655431 223333 33334456777777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWK 434 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~ 434 (462)
.-+.++.+.++ ..|...+-+..+.+. .....+.++...|.. +|...+..+ .-.||..+-...+.+|.
T Consensus 211 ~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 211 EAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 77777877777 456655555555322 234566777777775 566666666 43567666665555553
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.12 E-value=0.97 Score=25.34 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.8
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHH
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVK 155 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~ 155 (462)
-|...|+.+...|...|++++|++
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 577888889999999999888863
No 290
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.63 E-value=10 Score=29.74 Aligned_cols=53 Identities=13% Similarity=-0.030 Sum_probs=37.9
Q ss_pred hccCCChhhHHHHHHhh---c---CCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcC
Q 036356 62 HLWSRTEWSAFGSFDGL---L---SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 114 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 114 (462)
..+.|++.+|++.|+.+ . +-...+--.++.++-+.++++.|...+++.++..+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 66778888888888887 2 22234566677777788888888888888877765
No 291
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=83.60 E-value=7.9 Score=29.66 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=29.0
Q ss_pred hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHH
Q 036356 244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311 (462)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 311 (462)
++..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+.+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-----------------P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-----------------PERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-----------------ccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 345566666666666555431 234555666666666666666666666553
No 292
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.53 E-value=4 Score=29.26 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 101 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 101 ~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
++.+-++.+...++ .|++.+..+-+.+|.+-+++..|+++|+..
T Consensus 25 e~rr~mN~l~~~Dl----------------VP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGYDL----------------VPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhcccc----------------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555566666666 777777777888888888888888888764
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.02 E-value=32 Score=30.17 Aligned_cols=136 Identities=12% Similarity=0.072 Sum_probs=84.8
Q ss_pred CCCceeehhh----hccCCChhhHHHHHHhh--cCCC-----cchHHHHHHhhcCccchhhHHHHHHHHHH---hcCCcc
Q 036356 52 DRTIVFLDLY----HLWSRTEWSAFGSFDGL--LSNE-----ENEYGTALDCSCDLEFLEQGKIVHGFMIK---LGLELE 117 (462)
Q Consensus 52 ~~~~~~~~~~----~~~~~~~~~A~~~~~~m--~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~~~ 117 (462)
+||+-.=|.. -.+...+++|+.-|++. ..+. -.+..-+++..-+.+++++....+.+|.. ..+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV--T 100 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV--T 100 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH--h
Confidence 5777655554 44555899999999998 3332 22445568888899999999988888863 222 0
Q ss_pred hhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHh
Q 036356 118 SDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197 (462)
Q Consensus 118 ~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 197 (462)
. .-+..+.|++++--....+.+-...+|+.-....-...+-..-..|-+.|-..|...|++.+..+++
T Consensus 101 r------------NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIl 168 (440)
T KOG1464|consen 101 R------------NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKIL 168 (440)
T ss_pred c------------cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHH
Confidence 0 1345567888877777777776666666542111111111222234445666777777887777777
Q ss_pred hccC
Q 036356 198 DRTL 201 (462)
Q Consensus 198 ~~m~ 201 (462)
.++.
T Consensus 169 kqLh 172 (440)
T KOG1464|consen 169 KQLH 172 (440)
T ss_pred HHHH
Confidence 7664
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.02 E-value=10 Score=31.24 Aligned_cols=61 Identities=13% Similarity=0.000 Sum_probs=41.6
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
.+..+...|++.|+.+.|.+.|..+.+....+. .-...+-.+|......+++..+.....+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--------------~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--------------HKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--------------HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455667777888888888888888776554321 2344566677777777777777777655
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.74 E-value=35 Score=30.52 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=89.4
Q ss_pred ccCCChhhHHHHHHhh---c---CCCcc------hHHHHHHhhcCccchhhHHHHHHHHHHh----cCCcchhHHHHHhh
Q 036356 63 LWSRTEWSAFGSFDGL---L---SNEEN------EYGTALDCSCDLEFLEQGKIVHGFMIKL----GLELESDLLISLTA 126 (462)
Q Consensus 63 ~~~~~~~~A~~~~~~m---~---~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~l~~~~~ 126 (462)
.+.|+.+.|..++.+. . .|+.. .|+.-...+.+..+++.|...+++..+. +- ...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~-------- 74 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDK-------- 74 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccc--------
Confidence 3578889999999888 2 23221 2444444444433888887777776543 10 000
Q ss_pred hcCCCCCe-----eeHHHHHHHHHhCCChhH---HHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhh
Q 036356 127 VCRYQPNV-----TLRNAMISGYAKNGYAEE---AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198 (462)
Q Consensus 127 ~~~~~p~~-----~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 198 (462)
..|+. .+...++.+|...+..+. |.++++.+ +....-...++-.-++.+.+.++.+.+.+.+.
T Consensus 75 ---~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l------~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 75 ---LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL------ESEYGNKPEVFLLKLEILLKSFDEEEYEEILM 145 (278)
T ss_pred ---cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH------HHhCCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence 02332 356677888888877655 44455554 22333335566567777777899999999999
Q ss_pred ccCCC---CcchHHHHHHHH---HhCc-hHHHHHHHhhhc
Q 036356 199 RTLDK---DVVMRSAMIVGY---GLHE-WSAFGSFDGLLS 231 (462)
Q Consensus 199 ~m~~~---~~~~~~~li~~~---~~~~-~~a~~~~~~m~~ 231 (462)
+|... ....+..++..+ .... ..+...+..+..
T Consensus 146 ~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 146 RMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 88742 334555555544 4444 566666655554
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.47 E-value=2.2 Score=23.40 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=16.1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555666666777777776666665
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.40 E-value=4 Score=36.28 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=68.0
Q ss_pred hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-C------CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-K------DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391 (462)
Q Consensus 319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 391 (462)
.|......+...++..-....+++.+...+-++.. | +...+ ..++.+ -.-++++++.++..=..-|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 45555566666666666667778888877766652 2 21111 223333 344677888888877777999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 392 QHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.++..+++.+.+.+++.+|.++.-.|
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999998887776
No 298
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.38 E-value=19 Score=34.50 Aligned_cols=79 Identities=10% Similarity=-0.016 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIE-PRHQHYARVVDLLARAGYSNHAFKFIMNMP-I-ELRL--SVRRALLSAWK 434 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~--~~~~~l~~~~~ 434 (462)
..|..++-+.|+.++|.+.+++|.+..-. -+......|++++...+.+.++..++.+.. + .|.. ..|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 45777778889999999999999873211 124577889999999999999999999882 2 2433 35665544444
Q ss_pred ccCC
Q 036356 435 IPMQ 438 (462)
Q Consensus 435 ~~~~ 438 (462)
..++
T Consensus 343 av~d 346 (539)
T PF04184_consen 343 AVGD 346 (539)
T ss_pred hhcc
Confidence 4443
No 299
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.15 E-value=4.3 Score=35.70 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=41.2
Q ss_pred HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhh
Q 036356 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIG 166 (462)
Q Consensus 87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 166 (462)
+.+-+.|..+|.+.+|.++.+...+... .+...|-.|+..++..|+--+|.+-++.+.+-...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-----------------L~e~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-----------------LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-----------------hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 3334455566666666666666655543 55556666666666666666666555555433334
Q ss_pred hcCCCCCchHH
Q 036356 167 KSEYRNNVIVN 177 (462)
Q Consensus 167 ~~~~~~~~~~~ 177 (462)
+.|+..|..++
T Consensus 346 elgi~vddsie 356 (361)
T COG3947 346 ELGIDVDDSIE 356 (361)
T ss_pred HhCCCcchhHH
Confidence 45555544443
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.12 E-value=1.5 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 393 HYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+|..+...|...|++++|+..+++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHH
Confidence 4555555666666666666655554
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.62 E-value=11 Score=33.60 Aligned_cols=97 Identities=7% Similarity=-0.107 Sum_probs=70.0
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHH
Q 036356 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRA 428 (462)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ 428 (462)
...+-..++..-....+++.++..+-+++.. -..|+... .+.+..+ -.=++++++.++..= |+-||..++..
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence 4555666676666778899999999888764 22232211 2223333 334677888877664 89999999999
Q ss_pred HHHHHHccCChHHHHHHHHhhhhcC
Q 036356 429 LLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 429 l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
++..+.+.+++.+|...+..|+++.
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988876653
No 302
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.52 E-value=9.9 Score=32.06 Aligned_cols=74 Identities=11% Similarity=-0.072 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHhHHHHHHHH
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH--GIEPRHQHYARVVDL 400 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~ 400 (462)
|.+.-+..+.+.+.+++|+...+.-. ..|..+-..++..+|-.|++++|..-++-.-.. ...+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455667778888899988877544 246777888999999999999999888877762 233346677777754
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.17 E-value=46 Score=30.78 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=35.7
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201 (462)
Q Consensus 140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (462)
...+..+.|+|+...+..... .+..++...|.++... +.++.+++...+++..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~-------~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQS-------NEDSPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhc-------cCCChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 456788899999866666553 1223355666655544 7889998888887655
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.02 E-value=6.6 Score=31.38 Aligned_cols=87 Identities=10% Similarity=-0.085 Sum_probs=52.1
Q ss_pred HHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhh--cCCCcchHHHHHHhh
Q 036356 17 LKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCS 93 (462)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~ 93 (462)
+..-.+.++..++..+++-+.-..... +....+... +...|+|.+|+.+|+.+ ..|.......|+..|
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~---------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEF---------PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333456778888888888887665321 333344444 89999999999999999 444444444555544
Q ss_pred cCccchhhHHHHH-HHHHHhc
Q 036356 94 CDLEFLEQGKIVH-GFMIKLG 113 (462)
Q Consensus 94 ~~~~~~~~a~~~~-~~m~~~g 113 (462)
....+ +..++.+ ++....+
T Consensus 88 L~~~~-D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 88 LYALG-DPSWRRYADEVLESG 107 (160)
T ss_pred HHHcC-ChHHHHHHHHHHhcC
Confidence 43332 3334333 3344444
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.82 E-value=3.5 Score=23.90 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 392 QHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.+++.|...|...|++++|..++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 35566666666666666666666554
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.10 E-value=2 Score=23.65 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 393 HYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.|..+...+...|++++|++.+++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455555666666666666666554
No 307
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.86 E-value=44 Score=29.80 Aligned_cols=142 Identities=11% Similarity=0.028 Sum_probs=90.4
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (462)
......|++.+|...|.......- -+...--.+..+|...|+.+.|..++... ...--
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-----------------~~~~~~~~la~~~l~~g~~e~A~~iL~~l-----P~~~~ 199 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-----------------ENSEAKLLLAECLLAAGDVEAAQAILAAL-----PLQAQ 199 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-----------------ccchHHHHHHHHHHHcCChHHHHHHHHhC-----cccch
Confidence 345678999999999998887642 34555667888999999999999999762 11111
Q ss_pred CCchhHHHHHHHHHHhcCCcchHHHHhccCC-CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhHHHHHH
Q 036356 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-EPRHQHYARVV 398 (462)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li 398 (462)
.........=|..+.+.....+...+-...- .| |...--.+...+...|+.+.|.+.+-.+.++.. .-|...-..|+
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 1111222223455555555555555544443 34 555566788889999999999887766666522 22344555566
Q ss_pred HHHHhcC
Q 036356 399 DLLARAG 405 (462)
Q Consensus 399 ~~~~~~g 405 (462)
+.|.--|
T Consensus 280 e~f~~~g 286 (304)
T COG3118 280 ELFEAFG 286 (304)
T ss_pred HHHHhcC
Confidence 5555555
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.84 E-value=10 Score=31.62 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=54.9
Q ss_pred hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356 244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323 (462)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p 323 (462)
+.+.|+ +.|.+.|-.+...+.. -++.....+ ..|.-..+.+++..++.+.+. +...+-.+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l----------------~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~--l~~~~~~~ 176 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPEL----------------ETAELQYAL-ATYYTKRDPEKTIQLLLRALE--LSNPDDNF 176 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCC----------------CCHHHHHHH-HHHHHccCHHHHHHHHHHHHH--hcCCCCCC
Confidence 445554 4555555555554432 334444444 444457789999999988765 55556678
Q ss_pred chhHHHHHHHHHHhcCCcchHH
Q 036356 324 NVIVNTVLIDMYAKCGSVDLAP 345 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~ 345 (462)
|+..+.+|...|-+.|+.+.|.
T Consensus 177 n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhhh
Confidence 8899999999999999988875
No 309
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.68 E-value=3.9 Score=21.09 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 036356 395 ARVVDLLARAGYSNHAFKFIM 415 (462)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~ 415 (462)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666666554
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.60 E-value=4.8 Score=23.25 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
..+++.+...|...|++++|+.++.+.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888899999999999888654
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.33 E-value=4.5 Score=29.34 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=18.7
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.|++.+..+.+.+|.+-+++..|+++|+-.
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 677777777777777777777777777764
No 312
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.51 E-value=21 Score=30.15 Aligned_cols=178 Identities=10% Similarity=-0.064 Sum_probs=102.2
Q ss_pred hccCCChhhHHHHHHhh--cCCC-cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSNE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
|-..|-+.-|.--|.+. +.|+ +.+||.+.-.+...|+++.|.+.|+...+.++ . .-|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp----------------~---y~Ya 135 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP----------------T---YNYA 135 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC----------------c---chHH
Confidence 33344444444444444 5565 56788888888899999999999998887765 2 2233
Q ss_pred HHHHH--HHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHH-HhhccCCCCcchHHHHHHHH
Q 036356 139 AMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPM-FFDRTLDKDVVMRSAMIVGY 215 (462)
Q Consensus 139 ~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~li~~~ 215 (462)
.+=++ +--.|+++-|.+=|...- ....-.|-...|- ..--..-++.+|.. +.++....|..-|...|-.|
T Consensus 136 ~lNRgi~~YY~gR~~LAq~d~~~fY----Q~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~ 208 (297)
T COG4785 136 HLNRGIALYYGGRYKLAQDDLLAFY----QDDPNDPFRSLWL---YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF 208 (297)
T ss_pred HhccceeeeecCchHhhHHHHHHHH----hcCCCChHHHHHH---HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH
Confidence 22222 233578888877666641 1111122122221 11122334455543 44555556666666666555
Q ss_pred HhCchHHHHHHHhhhc----------CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCC
Q 036356 216 GLHEWSAFGSFDGLLS----------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGL 265 (462)
Q Consensus 216 ~~~~~~a~~~~~~m~~----------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 265 (462)
.-..-....++++... .=..||--+..-+...|++++|..+|+..+..++
T Consensus 209 yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 209 YLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 4433111222333333 2245677788888999999999999998887653
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.16 E-value=13 Score=26.77 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 036356 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLS 431 (462)
Q Consensus 374 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~ 431 (462)
++.+-++.+....+-|+.....+.+.+|-+.+++.-|.++++-. +...+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 44455555555566677777777777777777777777777655 22223334554443
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.76 E-value=34 Score=28.44 Aligned_cols=89 Identities=6% Similarity=-0.038 Sum_probs=53.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH-----HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHc
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY-----ARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKI 435 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~ 435 (462)
+...+...+++++|+..++..... |....+ -.|.......|.+|+|+.+++.. +-.-.......-...+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 345666777777777777766642 222222 23455666777788887777776 211122234445566777
Q ss_pred cCChHHHHHHHHhhhhcC
Q 036356 436 PMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 436 ~~~~~~a~~~~~~~~~~~ 453 (462)
.|+.++|...+.+.+..+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 777777777777666654
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.61 E-value=3 Score=22.96 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=15.9
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555566666666666666666554
No 316
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.39 E-value=50 Score=29.27 Aligned_cols=169 Identities=13% Similarity=0.082 Sum_probs=86.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCch-------HHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHH
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI-------VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l 211 (462)
-+.+..++.+++++|+..|.+. ...|...|.. +...+...|.+.|+....-++..... -.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~i-----L~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr--------e~ 74 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRI-----LGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR--------EA 74 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH-----hcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH--------HH
Confidence 3556678899999999999997 6777766654 34457777888888776655543321 11
Q ss_pred HHHHHhCc-hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH
Q 036356 212 IVGYGLHE-WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290 (462)
Q Consensus 212 i~~~~~~~-~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 290 (462)
+.-+.+.. .+.++.+-++... ....++.-..+....++.....+ .++ .....-..
T Consensus 75 m~~ftk~k~~KiirtLiekf~~-------------~~dsl~dqi~v~~~~iewA~rEk-r~f----------Lr~~Le~K 130 (421)
T COG5159 75 MEDFTKPKITKIIRTLIEKFPY-------------SSDSLEDQIKVLTALIEWADREK-RKF----------LRLELECK 130 (421)
T ss_pred HHHhcchhHHHHHHHHHHhcCC-------------CCccHHHHHHHHHHHHHHHHHHH-HHH----------HHHHHHHH
Confidence 11122222 1111111111110 01111222222211111110000 000 01122246
Q ss_pred HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH-HHHHHhcCCcchHH
Q 036356 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL-IDMYAKCGSVDLAP 345 (462)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~ 345 (462)
+|..+.+.|++.+|+.+....+++ +++..-+|+..+...+ -.+|-+..++.++.
T Consensus 131 li~l~y~~~~YsdalalIn~ll~E-lKk~DDK~~Li~vhllESKvyh~irnv~Ksk 185 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHE-LKKYDDKINLITVHLLESKVYHEIRNVSKSK 185 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH-HHhhcCccceeehhhhhHHHHHHHHhhhhhh
Confidence 788899999999999998887665 5666667765554433 23444444444433
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.96 E-value=24 Score=34.71 Aligned_cols=102 Identities=21% Similarity=0.144 Sum_probs=70.4
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (462)
..+.|+++.|.++..+ .-+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+.
T Consensus 647 al~lgrl~iA~~la~e-----------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVE-----------ANSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhcCcHHHHHHHHHh-----------hcchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhH
Confidence 4466788888777655 13456678888888888888888888876644 6677777777777665
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036356 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418 (462)
Q Consensus 375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 418 (462)
...+-....+.|. .|....+|...|+++++.+++..-+
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 5555555555443 2444566677888888888877763
No 318
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=75.47 E-value=46 Score=27.72 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=117.5
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CCc-cchHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDV-VMRSA 361 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~ 361 (462)
...+......+...+....+...+...... .........+......+...++...+...+..... ++. .....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL 134 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHH
Confidence 567777888888999999999988873211 13334456666777778888888999999987764 222 23333
Q ss_pred HHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHH
Q 036356 362 MTV-GYGLHGLGEEGWVLFHHIRKHGIEP----RHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR--LSVRRALLSAW 433 (462)
Q Consensus 362 li~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~l~~~~ 433 (462)
... .+...|+++.|...+.+... ..| ....+......+...++.++|...+... ...++ ...+..+...+
T Consensus 135 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 135 LALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 444 78899999999999999966 444 2445555555677889999999999998 44444 67888888888
Q ss_pred HccCChHHHHHHHHhhhh
Q 036356 434 KIPMQQWENMLQTIRGID 451 (462)
Q Consensus 434 ~~~~~~~~a~~~~~~~~~ 451 (462)
...++...+...+.....
T Consensus 213 ~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 213 LKLGKYEEALEYYEKALE 230 (291)
T ss_pred HHcccHHHHHHHHHHHHh
Confidence 888888888877766543
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.00 E-value=11 Score=27.40 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 374 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+..+-++.+....+-|+.....+.+.+|-+.+++..|.++++-.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445555555566666666666666666666666666666665
No 320
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.87 E-value=67 Score=29.28 Aligned_cols=152 Identities=12% Similarity=-0.000 Sum_probs=103.7
Q ss_pred HcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHH----HHHHHh
Q 036356 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAM----TVGYGL 368 (462)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l----i~~~~~ 368 (462)
.-.|+..+|-..+++.++ ..+.|...+.-.=++|.-.|+.+.-...++++.. +|..+|+-+ .-++..
T Consensus 114 ~~~g~~h~a~~~wdklL~------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hccccccHHHHHHHHHHH------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 346777777777777432 3555677777777788889998888888888773 566666533 345557
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC----HHHHHHHHHHHHccCChHH
Q 036356 369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM--PIELR----LSVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~----~~~~~~l~~~~~~~~~~~~ 441 (462)
.|-+++|++.-++..+ +.|+ .=.-.++...+--.|+..++.++..+- ..+.. ..-|-...-.+...+.++.
T Consensus 188 ~g~y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred hccchhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 8999999998888777 6554 445566777777889999999988876 11111 2233444455566688888
Q ss_pred HHHHHHhhhhcCCC
Q 036356 442 NMLQTIRGIDEGEK 455 (462)
Q Consensus 442 a~~~~~~~~~~~~~ 455 (462)
|+..+.+.+-....
T Consensus 266 aleIyD~ei~k~l~ 279 (491)
T KOG2610|consen 266 ALEIYDREIWKRLE 279 (491)
T ss_pred HHHHHHHHHHHHhh
Confidence 88877765544443
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.02 E-value=70 Score=31.70 Aligned_cols=131 Identities=13% Similarity=0.044 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHH
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVG 365 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 365 (462)
..-+.++..+-+.|-.++|+++-.+ |+ .- .....+.|+++.|.++..+. .+..-|..|.++
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D------------~d-~r----Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTD------------PD-QR----FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCC------------hh-hh----hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHH
Confidence 3455666677777777777766433 11 11 22234677788777776544 345568888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQ 445 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 445 (462)
..+.+++..|.+.|.+... |..|+-.+...|+-+....+-.... .....|.-+-+|...|++++.++.
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK---KQGKNNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH---hhcccchHHHHHHHcCCHHHHHHH
Confidence 8888888888887776654 3455555555565554333333320 001122333344555666655554
Q ss_pred HH
Q 036356 446 TI 447 (462)
Q Consensus 446 ~~ 447 (462)
+.
T Consensus 744 Li 745 (794)
T KOG0276|consen 744 LI 745 (794)
T ss_pred HH
Confidence 43
No 322
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.99 E-value=83 Score=29.04 Aligned_cols=69 Identities=9% Similarity=-0.002 Sum_probs=48.7
Q ss_pred CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHH
Q 036356 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKW 311 (462)
Q Consensus 232 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 311 (462)
....++..+...+.+.|.++.|...+..+.+.+...+ ..+....-.-...+...|+.++|...++..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~-------------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE-------------SLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc-------------CCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3345677888889999999999999998887553211 013333444556677889999999999885
Q ss_pred HH
Q 036356 312 MD 313 (462)
Q Consensus 312 ~~ 313 (462)
+.
T Consensus 211 ~~ 212 (352)
T PF02259_consen 211 LK 212 (352)
T ss_pred HH
Confidence 54
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.33 E-value=11 Score=22.71 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=18.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHG 386 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g 386 (462)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777777544
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.23 E-value=77 Score=28.34 Aligned_cols=46 Identities=7% Similarity=-0.019 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
..+|+++|..++++. ....+-+.+|..+....+..+|...|...++
T Consensus 149 s~KA~ELFayLv~hk------------------gk~v~~~~~ie~lwpe~D~kka~s~lhTtvy 194 (361)
T COG3947 149 SRKALELFAYLVEHK------------------GKEVTSWEAIEALWPEKDEKKASSLLHTTVY 194 (361)
T ss_pred hhHHHHHHHHHHHhc------------------CCcccHhHHHHHHccccchhhHHHHHHHHHH
Confidence 367889999888864 2334455677788888888888877755443
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.08 E-value=27 Score=27.63 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=37.3
Q ss_pred cCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh-hccCCChhhHHHHHHhh-cCCCcchHHHHHHhhc
Q 036356 22 ALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY-HLWSRTEWSAFGSFDGL-LSNEENEYGTALDCSC 94 (462)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~m-~~~~~~~~~~ll~~~~ 94 (462)
+..++.++..+++.|.-..... +...++... +...|+|.+|+.+|+.. .......|...+.++|
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~---------~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNL---------KELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCc---------cccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 4666777777777776554321 333344444 77778888888888877 3333334444444443
No 326
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.77 E-value=1.6e+02 Score=31.75 Aligned_cols=238 Identities=13% Similarity=-0.022 Sum_probs=122.4
Q ss_pred HHHhhccCCCCcchHHHHHHHHHhCc-hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHH
Q 036356 194 PMFFDRTLDKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL 271 (462)
Q Consensus 194 ~~~~~~m~~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 271 (462)
..+.+.+.++|...-..-+..+.+.+ +++...+.+... ++...-...+.++.+.+........+..+.+. +|+.+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 34455555677766666677777766 666555555555 55444445544444332221112222222221 23333
Q ss_pred HHHHHHhhc--------------CCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh
Q 036356 272 LISLTAVCR--------------YQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337 (462)
Q Consensus 272 ~~~l~~~~~--------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 337 (462)
-...+..++ ..+|...-...+.++.+.+..+.... .--.++..+-.....++..
T Consensus 701 R~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~------------~l~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 701 RAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAG------------AATDENREVRIAVAKGLAT 768 (897)
T ss_pred HHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHH------------HhcCCCHHHHHHHHHHHHH
Confidence 222222221 13343334444444444433322111 1123455555556667777
Q ss_pred cCCcch-H-HHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 036356 338 CGSVDL-A-PMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIM 415 (462)
Q Consensus 338 ~g~~~~-A-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 415 (462)
.+..+. + ..+..-+.++|...-...+.++...|..+.+...+..+.+ .++...-...+.++.+.+.. ++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 665443 2 2333334467777777888888888876655444555553 24555666677777777754 4444444
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 416 NMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 416 ~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
.+--.|+..+-..-+.++.+.+....+...+...+
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44235677777777777776532345555554443
No 327
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.31 E-value=83 Score=27.99 Aligned_cols=161 Identities=7% Similarity=-0.004 Sum_probs=91.5
Q ss_pred HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 318 (462)
Q Consensus 239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (462)
.+.+-..+.+++++|+..+.++...|+..|..+.+ -...+...+...|...|+...--+....... .|..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n---------EqE~tvlel~~lyv~~g~~~~l~~~i~~sre-~m~~ 77 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN---------EQEATVLELFKLYVSKGDYCSLGDTITSSRE-AMED 77 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh---------HHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-HHHH
Confidence 34556678899999999999999999886665543 2234556677788888877665554432111 1222
Q ss_pred hCCCCchhHHHHHHHHHHhcC-CcchHHHHhccCCCC----C-----ccchHHHHHHHHhcCChHHHHHHH----HHHHH
Q 036356 319 SEYRNNVIVNTVLIDMYAKCG-SVDLAPMFFDRTLDK----D-----VVMRSAMTVGYGLHGLGEEGWVLF----HHIRK 384 (462)
Q Consensus 319 ~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~----~-----~~~~~~li~~~~~~~~~~~a~~~~----~~m~~ 384 (462)
-.-.-.+....+||+.+.... .++.-..+.....++ + ...-.-+|..+.+.|.+.+|+.+. .++.+
T Consensus 78 ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 78 FTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred hcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 222223444555555554322 244444444443321 1 111245788999999999988654 44555
Q ss_pred CCCCCCHhHHHHHH-HHHHhcCChHH
Q 036356 385 HGIEPRHQHYARVV-DLLARAGYSNH 409 (462)
Q Consensus 385 ~g~~p~~~~~~~li-~~~~~~g~~~~ 409 (462)
-.-+|+..+...+- .+|.+-.+..+
T Consensus 158 ~DDK~~Li~vhllESKvyh~irnv~K 183 (421)
T COG5159 158 YDDKINLITVHLLESKVYHEIRNVSK 183 (421)
T ss_pred hcCccceeehhhhhHHHHHHHHhhhh
Confidence 46666644433332 24444444433
No 328
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.03 E-value=11 Score=23.08 Aligned_cols=37 Identities=8% Similarity=0.071 Sum_probs=28.6
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 278 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (462)
....+.|-.+++..+++.|.+.|+..++..+..+++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3345778888999999999999998777776666554
No 329
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=67.31 E-value=35 Score=31.36 Aligned_cols=128 Identities=17% Similarity=0.112 Sum_probs=85.2
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-------CCcc-----
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KDVV----- 357 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~----- 357 (462)
++-.++.-.+.++++++.|+..+.-.-..........+|..|-..|.+..|+++|.-...+..+ .|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3556666777899999999876431111122223467888999999999999988765554331 1211
Q ss_pred -chHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 358 -MRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 358 -~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+.-.|.-++-..|....|.+..++..+. |-+|. ....-.+.+.|-..|+.|.|..-++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1224555677788888888888776554 44443 445567888899999999988877764
No 330
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=66.37 E-value=71 Score=26.54 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=44.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHhh----hh-----hhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhc
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWM----DY-----YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~----~~-----~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (462)
+++-.|.+.-+|.+..++++.|. |- .....+..+...+-|.....+.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 55667888888999998888874 11 111122345566788889999999999999999985
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.21 E-value=5.9 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=16.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
.+..++.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 345566667777777777777766
No 332
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=66.04 E-value=87 Score=27.08 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=39.8
Q ss_pred HHhcCChHHHHHHHHHHHHC-C-----------CCCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHH
Q 036356 366 YGLHGLGEEGWVLFHHIRKH-G-----------IEPRHQHYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRALL 430 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~-g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~ 430 (462)
+...||...|+..++.-... | -.|.+.....++..|. .+++++|.+++.++ |+.|.. .-++++
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~F 279 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLF 279 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 44567777777776664443 1 1244555555555544 46778888887776 555533 234555
Q ss_pred HHHHcc
Q 036356 431 SAWKIP 436 (462)
Q Consensus 431 ~~~~~~ 436 (462)
+++...
T Consensus 280 Rv~K~~ 285 (333)
T KOG0991|consen 280 RVVKNM 285 (333)
T ss_pred HHHHhc
Confidence 554433
No 333
>PRK11906 transcriptional regulator; Provisional
Probab=66.00 E-value=1.3e+02 Score=28.96 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=15.3
Q ss_pred chH--HHHHHHHHhC----c---hHHHHHHHhhh
Q 036356 206 VMR--SAMIVGYGLH----E---WSAFGSFDGLL 230 (462)
Q Consensus 206 ~~~--~~li~~~~~~----~---~~a~~~~~~m~ 230 (462)
..| ...+.+...- . +.|+.+|.+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~ 285 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQ 285 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHh
Confidence 456 5566555441 1 67777777777
No 334
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.90 E-value=9.7 Score=24.92 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 372 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
++...++++.+.. .+=|....-.+|.+|...|++++|.++++++
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555544 3334455556677777777777777776664
No 335
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.59 E-value=49 Score=25.42 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 373 EEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
+.+.++|..|..+|+--. +..|......+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 489999999999988777 67888888899999999999999864
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.29 E-value=98 Score=27.29 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=17.7
Q ss_pred hcCCCCCchHHHHHHHHH-HhcCCcccHHHHhhccC
Q 036356 167 KSEYRNNVIVNTVLIDMY-AKCGSVDLAPMFFDRTL 201 (462)
Q Consensus 167 ~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~ 201 (462)
..+..||+..=|.--+.- .+..++++|+.-|+++.
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVl 54 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVL 54 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHH
Confidence 455566665444322211 23345666777666554
No 337
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.08 E-value=23 Score=29.57 Aligned_cols=54 Identities=17% Similarity=0.059 Sum_probs=38.1
Q ss_pred hcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036356 368 LHGLGEEGWVLFHHIRKH-GIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL 421 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 421 (462)
...+.+......+.+.+. ...|+..+|..++.++...|+.++|.++..++ ..-|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445544444433333332 47899999999999999999999999998888 4445
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.86 E-value=12 Score=19.22 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=13.4
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
|..+...+...++++.|...+....+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444455555555555555555443
No 339
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.84 E-value=62 Score=24.85 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
.+..+|..|..+|+. .--+..|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG---------------~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIG---------------TKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTS---------------TTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcc---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999999985 55677788888889999999999999875
No 340
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.20 E-value=1e+02 Score=27.23 Aligned_cols=122 Identities=12% Similarity=-0.045 Sum_probs=60.4
Q ss_pred CCCeeeHHHHHHHHHhCCChh-HHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHH
Q 036356 131 QPNVTLRNAMISGYAKNGYAE-EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRS 209 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 209 (462)
..|...-..++..+...+.-+ +-.++.+.+..+......-.-|......+...|.+.|++.+|+.-|-.-.+++...+.
T Consensus 46 ~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~ 125 (260)
T PF04190_consen 46 PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYV 125 (260)
T ss_dssp --SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHH
Confidence 556555556666555544322 3444444443332011223346778888999999999999998877655444444432
Q ss_pred HHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHh
Q 036356 210 AMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263 (462)
Q Consensus 210 ~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 263 (462)
.++.-....+ .++ +.. ..-.+--|.-.+++..|...++...+.
T Consensus 126 ~ll~~~~~~~~~~e~----------dlf-i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 126 MLLEEWSTKGYPSEA----------DLF-IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHTSS--H----------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcch----------hHH-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2333222222 111 111 112233344567788888877776655
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.12 E-value=40 Score=28.62 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=32.0
Q ss_pred HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHH
Q 036356 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPK 159 (462)
Q Consensus 87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (462)
+..++.+.+.+.+.++++..++-++..+ -|.-.-..+++.++-.|+|++|..-++-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakP-----------------tda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKP-----------------TDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC-----------------ccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3344455555666666666666555543 3444455566666666766666655444
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.97 E-value=14 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=22.5
Q ss_pred HHHHhhcCccchhhhHHHHHHHHHhC
Q 036356 239 TALDCSCDLEFLEQGKIVHGFMIKLG 264 (462)
Q Consensus 239 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 264 (462)
.+..+|...|+.+.|..+++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36678999999999999999999755
No 343
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.88 E-value=34 Score=20.92 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=28.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 399 (462)
...+.|-..++..++++|.+.|+..+...|..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34467888889999999999899988888877764
No 344
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.78 E-value=98 Score=26.03 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=61.2
Q ss_pred HHHhcCCcchHHHHhccCCC--CC------ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 036356 334 MYAKCGSVDLAPMFFDRTLD--KD------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARA 404 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 404 (462)
-+.+.|++++|..-|....+ |. .+.|..-..++.+.+.++.|++-..+.++ +.|+ ......-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhh
Confidence 35678888888888876552 21 23455555677788888888888888777 6675 34444445678888
Q ss_pred CChHHHHHHHHhC-CCCCCHH
Q 036356 405 GYSNHAFKFIMNM-PIELRLS 424 (462)
Q Consensus 405 g~~~~A~~~~~~m-~~~p~~~ 424 (462)
..+++|++=++.+ ...|...
T Consensus 182 ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchH
Confidence 8888888888887 5556544
No 345
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.01 E-value=88 Score=24.71 Aligned_cols=81 Identities=9% Similarity=0.112 Sum_probs=48.5
Q ss_pred hhcCCCCCc--hHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHh
Q 036356 166 GKSEYRNNV--IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDC 243 (462)
Q Consensus 166 ~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~ 243 (462)
.+.+..+++ ...|.++.-.+..+++.....+++.+..-+.. .+.+. .+...|..++.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~----~~~~~----------------~~~ssf~~if~S 88 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTD----NIIGW----------------LDNSSFHIIFKS 88 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHH----HHhhh----------------cccchHHHHHHH
Confidence 445555554 34577777777788888888888776321111 00011 345566666766
Q ss_pred hcCccc-hhhhHHHHHHHHHhCCC
Q 036356 244 SCDLEF-LEQGKIVHGFMIKLGLE 266 (462)
Q Consensus 244 ~~~~~~-~~~a~~~~~~~~~~~~~ 266 (462)
.++..- --.+..+|..+.+.+.+
T Consensus 89 lsnSsSaK~~~~~Lf~~Lk~~~~~ 112 (145)
T PF13762_consen 89 LSNSSSAKLTSLTLFNFLKKNDIE 112 (145)
T ss_pred HccChHHHHHHHHHHHHHHHcCCC
Confidence 665555 44556777777776665
No 346
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=58.95 E-value=1.3e+02 Score=26.80 Aligned_cols=156 Identities=9% Similarity=-0.014 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHcCCChhH---HHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-C--Cccch
Q 036356 286 TLWNAMISGYAKNGYAEE---AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-K--DVVMR 359 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~ 359 (462)
.+...++.+|...+..+. |.++++. +. ....-.+.++-.-++.+.+.++.+.+.+++.+|.. . ....+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~-----l~-~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRL-----LE-SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHH-----HH-HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 456667788888776554 4445444 21 22222244555567777778999999999998874 2 34556
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHh-HHH-HHHHH-H--HhcC------ChHHHHHHHHhC------CCC
Q 036356 360 SAMTVGYGL--HGLGEEGWVLFHHIRKHGIEPRHQ-HYA-RVVDL-L--ARAG------YSNHAFKFIMNM------PIE 420 (462)
Q Consensus 360 ~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~-~~~-~li~~-~--~~~g------~~~~A~~~~~~m------~~~ 420 (462)
...+..+-. ......|...+..+....+.|... ... .++.- + ...+ +.+.+.++++.. ++.
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 665555522 234467777777777776666643 111 11111 1 1211 144455555533 222
Q ss_pred CCHH------HHHHHHHHHHccCChHHHHHHHHh
Q 036356 421 LRLS------VRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 421 p~~~------~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
+... .|+. ...+.+.+++.+|..++.-
T Consensus 239 ~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 239 AEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHH
Confidence 2221 2333 3556778899999977763
No 347
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.67 E-value=43 Score=21.09 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=18.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 394 (462)
+.-++.+.|++++|.+..+.+.+ +.|+..-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHH
Confidence 44556666777777777777666 66664433
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.85 E-value=1.1e+02 Score=28.64 Aligned_cols=157 Identities=8% Similarity=-0.075 Sum_probs=0.0
Q ss_pred hccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh------hccCCChhhHHHHHHhh---------------
Q 036356 20 CVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY------HLWSRTEWSAFGSFDGL--------------- 78 (462)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~m--------------- 78 (462)
+........++..|...+..+ .+..++.-+ +.+...-.++ +..+|+.+.|.+++++.
T Consensus 4 f~hs~~Y~~~q~~F~~~v~~~-Dp~~l~~ll-~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~ 81 (360)
T PF04910_consen 4 FEHSKAYQEAQEQFYAAVQSH-DPNALINLL-QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF 81 (360)
T ss_pred EeCCHHHHHHHHHHHHHHHcc-CHHHHHHHH-HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred --------------cCCCcchHHHH---HHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHH
Q 036356 79 --------------LSNEENEYGTA---LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMI 141 (462)
Q Consensus 79 --------------~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li 141 (462)
..-|..-|.++ |..+.+.|-+..|.++.+-+...++ .-|+..-..+|
T Consensus 82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp----------------~~DP~g~ll~I 145 (360)
T PF04910_consen 82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDP----------------DEDPLGVLLFI 145 (360)
T ss_pred hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC----------------CCCcchhHHHH
Q ss_pred HHHH-hCCChhHHHHHHHHhhhhhhhhcCCCC----CchHHHHHHHHHHhcCCc---------------ccHHHHhhc
Q 036356 142 SGYA-KNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSV---------------DLAPMFFDR 199 (462)
Q Consensus 142 ~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~---------------~~a~~~~~~ 199 (462)
+.|+ ++++++-.+++.+.. .....+. -...--++.-++...++. +.|...+.+
T Consensus 146 D~~ALrs~~y~~Li~~~~~~-----~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~ 218 (360)
T PF04910_consen 146 DYYALRSRQYQWLIDFSESP-----LAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQK 218 (360)
T ss_pred HHHHHhcCCHHHHHHHHHhH-----hhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHH
No 349
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.82 E-value=70 Score=26.37 Aligned_cols=21 Identities=5% Similarity=-0.137 Sum_probs=10.6
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 036356 364 VGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~ 384 (462)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 344555555555555555443
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.60 E-value=46 Score=24.28 Aligned_cols=48 Identities=15% Similarity=0.042 Sum_probs=24.0
Q ss_pred HHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356 143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201 (462)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (462)
.+...|++++|..+.+.+ ..||...|-+|-. .+.|--+++...+.+|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~---------~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL---------CYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHccchHHHHHHhcCCC---------CCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 355566666666655543 3555555544432 33444444444444443
No 351
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.29 E-value=1.6e+02 Score=26.82 Aligned_cols=144 Identities=10% Similarity=0.057 Sum_probs=82.1
Q ss_pred hhHHHHHhhHHHHHHHHhhCC---CCchhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccchHHHHHHHHhcCChHHHH
Q 036356 301 AEEAVKLFPKWMDYYIGKSEY---RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGLHGLGEEGW 376 (462)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~ 376 (462)
.+.|.+.|..+ +..... ..+...-..++....+.|+.+.-..+++.... ++..-...++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~----~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAW----LDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHH----HHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHH----hcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHH
Confidence 45566666664 332122 44555656666777777776665566665553 45566788999999999999999
Q ss_pred HHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCh--HHHHHHHHhC------CCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036356 377 VLFHHIRKHG-IEPRHQHYARVVDLLARAGYS--NHAFKFIMNM------PIELRLSVRRALLSAWKIPMQQWENMLQTI 447 (462)
Q Consensus 377 ~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 447 (462)
++++.....+ +++.. ...++.++...+.. +.+.+.+..- ...++......++..+...-..++.+..+.
T Consensus 222 ~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 9999999864 54433 34444555544544 7777777665 223333355666666555444455555555
Q ss_pred hhh
Q 036356 448 RGI 450 (462)
Q Consensus 448 ~~~ 450 (462)
+..
T Consensus 300 ~f~ 302 (324)
T PF11838_consen 300 EFF 302 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 352
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.21 E-value=2.4e+02 Score=28.92 Aligned_cols=42 Identities=5% Similarity=-0.255 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCcccHHHHhhccC---CCCcchHHHHHHHHHhCc
Q 036356 178 TVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMIVGYGLHE 219 (462)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~ 219 (462)
.....+....|+.++|......+- ......++.++..+.+.|
T Consensus 133 c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 133 CNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcC
Confidence 334444555555444433333321 123344555555555444
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=55.84 E-value=22 Score=29.16 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC-----------hHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356 373 EEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY-----------SNHAFKFIMNM-PIELRLSVRRALLSAWK 434 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m-~~~p~~~~~~~l~~~~~ 434 (462)
++|..-|++... +.|+ ..++..+..+|...+. +++|.+.|+.. ..+|+..+|+.-+....
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 334444444444 5666 4555555555554432 23333333333 45566666666555554
No 354
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.77 E-value=82 Score=23.34 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=47.2
Q ss_pred cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchH
Q 036356 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 176 (462)
Q Consensus 97 ~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 176 (462)
...++|..+.+.+...+- -...+--+-+..+.+.|++++|+.. ......||...
T Consensus 20 HcH~EA~tIa~wL~~~~~-----------------~~E~v~lIr~~sLmNrG~Yq~ALl~---------~~~~~~pdL~p 73 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-----------------MEEVVALIRLSSLMNRGDYQEALLL---------PQCHCYPDLEP 73 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-----------------THHHHHHHHHHHHHHTT-HHHHHHH---------HTTS--GGGHH
T ss_pred HHHHHHHHHHHHHHhCCc-----------------HHHHHHHHHHHHHHhhHHHHHHHHh---------cccCCCccHHH
Confidence 356777888888777543 2222233334557788888888222 23446777777
Q ss_pred HHHHHHHHHhcCCcccHHHHhhccCCCCcch
Q 036356 177 NTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207 (462)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 207 (462)
|-+|- -.+.|--+++...+.++...+...
T Consensus 74 ~~AL~--a~klGL~~~~e~~l~rla~~g~~~ 102 (116)
T PF09477_consen 74 WAALC--AWKLGLASALESRLTRLASSGSPE 102 (116)
T ss_dssp HHHHH--HHHCT-HHHHHHHHHHHCT-SSHH
T ss_pred HHHHH--HHhhccHHHHHHHHHHHHhCCCHH
Confidence 75543 457788888888888776544433
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=55.72 E-value=60 Score=29.63 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=8.1
Q ss_pred HHcCCChhHHHHHhhH
Q 036356 295 YAKNGYAEEAVKLFPK 310 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~ 310 (462)
|.+.|++++|++.|.+
T Consensus 107 yFKQgKy~EAIDCYs~ 122 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYST 122 (536)
T ss_pred hhhccchhHHHHHhhh
Confidence 5555555555555544
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.74 E-value=25 Score=24.25 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=35.8
Q ss_pred hcCChHHHHHHHHhC-C---CCC-CHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 403 RAGYSNHAFKFIMNM-P---IEL-RLSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 403 ~~g~~~~A~~~~~~m-~---~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
...+.++|+..++.. . -.| -..++..|+.+++..|++.+.+......
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999988887 2 122 2458889999999999999988665543
No 357
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.70 E-value=2.2e+02 Score=27.72 Aligned_cols=102 Identities=6% Similarity=-0.073 Sum_probs=68.4
Q ss_pred HHHhccCCCCCccch-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH--HhcCChHHHHHHHHhC--C
Q 036356 345 PMFFDRTLDKDVVMR-SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLL--ARAGYSNHAFKFIMNM--P 418 (462)
Q Consensus 345 ~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~--~~~g~~~~A~~~~~~m--~ 418 (462)
...+..+..++..+. +.+++-+.+.|-.++|..++..+.. .+|- ...|.-+|+.= ..+-+..-+.++++.| .
T Consensus 448 i~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 448 ISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE 525 (568)
T ss_pred HHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH
Confidence 344445556676665 4677778888888999999999887 5554 55666666532 2223377777888887 3
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 419 IELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 419 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
+..|+..|--.+.-=...|..+.+-..+.+
T Consensus 526 fg~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 526 FGADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred hCCChHHHHHHHHhhccCCCcccccHHHHH
Confidence 337788888877777777877666544443
No 358
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.20 E-value=67 Score=22.72 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHH
Q 036356 102 GKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLI 181 (462)
Q Consensus 102 a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li 181 (462)
+.++++.+.+.|+ -+......+-.+-...|+.+.|.++++.+ . -....|...+
T Consensus 21 ~~~v~d~ll~~~i-----------------lT~~d~e~I~aa~~~~g~~~~ar~LL~~L-----~-----rg~~aF~~Fl 73 (88)
T cd08819 21 TRDVCDKCLEQGL-----------------LTEEDRNRIEAATENHGNESGARELLKRI-----V-----QKEGWFSKFL 73 (88)
T ss_pred HHHHHHHHHhcCC-----------------CCHHHHHHHHHhccccCcHHHHHHHHHHh-----c-----cCCcHHHHHH
Confidence 4466666666665 44444444433334567888888888885 2 3345677778
Q ss_pred HHHHhcCCcccHH
Q 036356 182 DMYAKCGSVDLAP 194 (462)
Q Consensus 182 ~~~~~~g~~~~a~ 194 (462)
+++...|.-+-|.
T Consensus 74 ~aLreT~~~~LA~ 86 (88)
T cd08819 74 QALRETEHHELAR 86 (88)
T ss_pred HHHHHcCchhhhh
Confidence 8777777655554
No 359
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.47 E-value=30 Score=30.95 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=31.9
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 398 (462)
|+.-|..-.+.||+++|+.++++.++.|+.--..+|-.-+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 5688888999999999999999999988876666654433
No 360
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.16 E-value=1.6e+02 Score=25.46 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=19.4
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCC
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLE 266 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (462)
...+..+++..|.++|+++..+.+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345678899999999999887654
No 361
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.42 E-value=27 Score=31.22 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=32.6
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (462)
.-|+..|....+.||+++|++++++..+.|+.--..+|..
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3477899999999999999999999999998644444433
No 362
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.37 E-value=1e+02 Score=22.88 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=20.7
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777778888888888877776
No 363
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.28 E-value=65 Score=28.21 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 394 YARVVDLLARAGYSNHAFKFIMNM-------P-IELRLSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
-..+..-|.+.|++++|.++++.+ + ..+...+...+..++...|+.+..+....+++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345666677778888888877776 1 12334455667777777777777766555543
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.15 E-value=47 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=25.7
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.|++..-..-+.++-+-+|+..|+++|+-.
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 788888888888888888888888888885
No 365
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=49.92 E-value=2.1e+02 Score=26.37 Aligned_cols=159 Identities=11% Similarity=0.024 Sum_probs=94.9
Q ss_pred eHHHHHHHHHhC---CChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHH
Q 036356 136 LRNAMISGYAKN---GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMI 212 (462)
Q Consensus 136 ~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li 212 (462)
.||++++.-... -.++.|..+|.. .......-..-.--+.+.++|.++-+.+..+-+.+..-......++.
T Consensus 131 ~fhA~v~~~L~~p~S~yye~a~~Ylsg------~~~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~ 204 (340)
T PF12069_consen 131 MFHAQVRAQLGQPASQYYEHAQAYLSG------QLGWDNWQTLGLQGIADICARLDQEDNAQLLRKALPHLPPEVLYALC 204 (340)
T ss_pred HHHHHHHHHcCCCcchhHHHHHHHHcC------CcchhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHH
Confidence 455555543322 235666665543 11111112333455788899999988887777777764445556666
Q ss_pred HHHHhCc---hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcC-CCCHhH
Q 036356 213 VGYGLHE---WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY-QPNVTL 287 (462)
Q Consensus 213 ~~~~~~~---~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 287 (462)
.++-... .-+..+.+.... +|......++++.+...........++.+.+.....+..+..++..-|-. --|...
T Consensus 205 ~~LEh~~l~~~l~~~l~~~~~~~~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~ 284 (340)
T PF12069_consen 205 GCLEHQPLPDKLAEALLERLEQAPDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQL 284 (340)
T ss_pred HHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHH
Confidence 6665555 555556666665 79999999999999888877777767777776655444444444433221 124444
Q ss_pred HHHHHHHHHcCCC
Q 036356 288 WNAMISGYAKNGY 300 (462)
Q Consensus 288 ~~~li~~~~~~~~ 300 (462)
....+..++..++
T Consensus 285 l~~fle~LA~~~~ 297 (340)
T PF12069_consen 285 LRLFLERLAQQDD 297 (340)
T ss_pred HHHHHHHHHcccH
Confidence 4444555554444
No 366
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.75 E-value=1.1e+02 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKW 311 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~ 311 (462)
|..++..|...|..++|++++.+.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHH
Confidence 778888888889999999988873
No 367
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=49.49 E-value=3e+02 Score=28.02 Aligned_cols=170 Identities=9% Similarity=0.086 Sum_probs=80.7
Q ss_pred CCCCCc-hHHHHHHHHHHhcCCcccHHHHhhccCCC--CcchHHHHHHHHHhCc-hHHHHHHHhhhcCCcchHHHHHHhh
Q 036356 169 EYRNNV-IVNTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAMIVGYGLHE-WSAFGSFDGLLSNEENEYGTALDCS 244 (462)
Q Consensus 169 ~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~-~~a~~~~~~m~~~~~~~~~~ll~~~ 244 (462)
.+..+. ..|..|+..+ +.=+.+....+++++... ....+..+++++...| ..|..+..+...-.
T Consensus 340 ~~~~~~~~~f~~Lv~~l-r~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~----------- 407 (618)
T PF01347_consen 340 PVSKETLSKFSRLVRLL-RTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSK----------- 407 (618)
T ss_dssp S--TTHHHHHHHHHHHH-TTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-----------
T ss_pred ccchhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-----------
Confidence 344443 3466666644 555677788888887765 6778999999999999 77777766664410
Q ss_pred cCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc---CCCC-------HhHHHHHHHHHHcCC--------ChhHHHH
Q 036356 245 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR---YQPN-------VTLWNAMISGYAKNG--------YAEEAVK 306 (462)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~-------~~~~~~li~~~~~~~--------~~~~a~~ 306 (462)
.-.-.+|.+++..+...-..|+..+...+...+. ...+ ..++.+++.-+|... +.....+
T Consensus 408 --~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~ 485 (618)
T PF01347_consen 408 --KLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIE 485 (618)
T ss_dssp ---S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--G
T ss_pred --CCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHH
Confidence 0111222333333333222444444444433321 1111 235667777777663 1222222
Q ss_pred HhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356 307 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352 (462)
Q Consensus 307 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (462)
-+.+.+...+....-.-+...-...|.+++..|....+..+..-+.
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~ 531 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIE 531 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTST
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhh
Confidence 2222222223221122334445567889999997754444444343
No 368
>PRK10941 hypothetical protein; Provisional
Probab=49.42 E-value=1.7e+02 Score=26.07 Aligned_cols=76 Identities=9% Similarity=-0.009 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM----PIELRLSVRRALLSAW 433 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~ 433 (462)
.+.|-.+|.+.++++.|+.+.+.+.. +.|+ ..-+.--.-.|.+.|.+..|..=++.. +-.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45677788889999999999999998 7787 444555555688888888887755444 6667777777777666
Q ss_pred Hcc
Q 036356 434 KIP 436 (462)
Q Consensus 434 ~~~ 436 (462)
...
T Consensus 262 ~~~ 264 (269)
T PRK10941 262 EQK 264 (269)
T ss_pred hhc
Confidence 544
No 369
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.19 E-value=17 Score=34.59 Aligned_cols=91 Identities=5% Similarity=0.027 Sum_probs=66.9
Q ss_pred CCceeehhh-hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhc
Q 036356 53 RTIVFLDLY-HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 128 (462)
Q Consensus 53 ~~~~~~~~~-~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~ 128 (462)
|+.+..-+. ....|+++.+...+... +.....+...+++..-+.|+++.|..+-+-|....+
T Consensus 323 p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei-------------- 388 (831)
T PRK15180 323 PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI-------------- 388 (831)
T ss_pred chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc--------------
Confidence 555544444 88899999999998888 666777889999999999999999999999988877
Q ss_pred CCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 129 RYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 129 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.+......-...--..|-++++.-.|++.
T Consensus 389 ---e~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 389 ---EDEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred ---CChhheeeecccHHHHhHHHHHHHHHHHH
Confidence 33333332222334456777887777776
No 370
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=48.64 E-value=39 Score=30.76 Aligned_cols=90 Identities=13% Similarity=0.005 Sum_probs=61.2
Q ss_pred HHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 036356 334 MYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHA 410 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 410 (462)
-|.+.|++++|+..|.... .| |.+++..-..+|.+..++..|+.=.......+- .-...|..-..+=...|+..+|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHHH
Confidence 4789999999999998766 45 888998889999999999988877666655110 0023344434444444556666
Q ss_pred HHHHHhC-CCCCCHH
Q 036356 411 FKFIMNM-PIELRLS 424 (462)
Q Consensus 411 ~~~~~~m-~~~p~~~ 424 (462)
.+=++.. .++|+..
T Consensus 185 KkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 185 KKDCETVLALEPKNI 199 (536)
T ss_pred HHhHHHHHhhCcccH
Confidence 6655555 6777743
No 371
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=48.40 E-value=1.2e+02 Score=23.20 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=40.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChHHHH
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR-ALLSAWKIPMQQWENM 443 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~l~~~~~~~~~~~~a~ 443 (462)
..+-.++..++.-.|..++|.++++..+..++....| -++..|....+.++-+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~ 119 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVI 119 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4556777888888888888888888887667776665 5888888887765544
No 372
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.21 E-value=1.8e+02 Score=25.18 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=12.1
Q ss_pred HhcCChHHHHHHHHhC
Q 036356 402 ARAGYSNHAFKFIMNM 417 (462)
Q Consensus 402 ~~~g~~~~A~~~~~~m 417 (462)
+..+++.+|+++|++.
T Consensus 165 a~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4557788888888877
No 373
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.19 E-value=92 Score=29.54 Aligned_cols=101 Identities=10% Similarity=-0.097 Sum_probs=64.1
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh--CCCCc-----hhHHHHHHHHHHhcCCcchHHHHhccCCC--
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS--EYRNN-----VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-- 353 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 353 (462)
.+...-..++.++....++.+.++..+.-.+...... |..|- -.....|++.++-.||+..|.++++.+.-
T Consensus 73 W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~ 152 (404)
T PF10255_consen 73 WNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK 152 (404)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc
Confidence 3444445556666666666666555544111111111 11221 12334567888899999999999987751
Q ss_pred ---------CCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356 354 ---------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383 (462)
Q Consensus 354 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 383 (462)
-.+.+|-.+.-+|...+++.+|.++|....
T Consensus 153 ~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 153 KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245577788889999999999999888754
No 374
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.03 E-value=1.1e+02 Score=30.93 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCcchHHHHhccCCCC------CccchHHHHHHHHhcCChH------HHHHHHHHHHHCCCCCCHhHHHHH
Q 036356 330 VLIDMYAKCGSVDLAPMFFDRTLDK------DVVMRSAMTVGYGLHGLGE------EGWVLFHHIRKHGIEPRHQHYARV 397 (462)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~l 397 (462)
+|+.+|...|++-.+.++++..... =...||..|+.+.+.|.++ .|.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 6788888888888888888766531 2345777788888888663 233333332 366677788777
Q ss_pred HHHHH
Q 036356 398 VDLLA 402 (462)
Q Consensus 398 i~~~~ 402 (462)
+++-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 76544
No 375
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.51 E-value=3.4e+02 Score=28.10 Aligned_cols=143 Identities=13% Similarity=0.034 Sum_probs=88.5
Q ss_pred hccCCChhhHHHHHHhh--cCC---CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcC-------
Q 036356 62 HLWSRTEWSAFGSFDGL--LSN---EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR------- 129 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~------- 129 (462)
+.+.+.+++|++.-+.. ..+ -.......|..+...|+++.|-...-.|...... .=..-+..+...+
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~-eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAA-EWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHH-HHHHHHHHhccccccchhhc
Confidence 77888899999998877 333 3346778888888889999988887777654320 0000222333333
Q ss_pred ------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh----hhhhhhcCCCC-------CchHHHHHHHHHHhcCCccc
Q 036356 130 ------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM----DYYIGKSEYRN-------NVIVNTVLIDMYAKCGSVDL 192 (462)
Q Consensus 130 ------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~ 192 (462)
++.+...|..++..+.. .+...-.++..+.. .........+| +...-..|+..|...+++..
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~ 523 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEK 523 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHH
Confidence 33456678888888887 55554444444432 00001111111 12233458888999999999
Q ss_pred HHHHhhccCCCCcc
Q 036356 193 APMFFDRTLDKDVV 206 (462)
Q Consensus 193 a~~~~~~m~~~~~~ 206 (462)
|...+-..+++++.
T Consensus 524 Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 524 ALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHhccChHHH
Confidence 99999888776554
No 376
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.15 E-value=67 Score=26.96 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=61.6
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhC-CCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHH---HHHHHhcC
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM---TVGYGLHG 370 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~ 370 (462)
+.++|++++|..-|.+.+. +...- -..-...|..-..++.+.+.++.|+.--.+..+-+..--.+| ..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 6789999999999988653 10000 001123444445567788888888877666665443322233 34788888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHh
Q 036356 371 LGEEGWVLFHHIRKHGIEPRHQ 392 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~g~~p~~~ 392 (462)
++++|++=++.+.+ ..|...
T Consensus 183 k~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 183 KYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred hHHHHHHHHHHHHH--hCcchH
Confidence 99999999999998 667643
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.03 E-value=1.1e+02 Score=30.40 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=29.5
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhcc
Q 036356 134 VTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200 (462)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (462)
.+....|.+.+.+.|..-+|..++.+- .... .....++.++-++|.-..+++.|++.|++.
T Consensus 642 ~v~~v~la~~~~~~~~~~da~~~l~q~-----l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a 702 (886)
T KOG4507|consen 642 DVPLVNLANLLIHYGLHLDATKLLLQA-----LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQA 702 (886)
T ss_pred cccHHHHHHHHHHhhhhccHHHHHHHH-----Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHH
Confidence 333444455555555555555555442 1111 233444455555555555555555555543
No 378
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=46.00 E-value=78 Score=30.08 Aligned_cols=72 Identities=14% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHH
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYG 216 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 216 (462)
.|+.-|...|++.+|.++++++ ..-.-....++-+++.+.-+.|+-...+.+++..-.....|-+.|-++|.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeL------gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~ 585 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKEL------GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHh------CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhh
Confidence 3444555555555555555443 11111123445555555555555544444444444455555555555543
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.82 E-value=37 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=16.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
.+|.+|...|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467777777888887777777654
No 380
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.29 E-value=1.3e+02 Score=25.12 Aligned_cols=87 Identities=8% Similarity=-0.038 Sum_probs=54.2
Q ss_pred HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH-----HHHHHHhcCCcchHHHHhccCCCCCccc--hHHHHH
Q 036356 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV-----LIDMYAKCGSVDLAPMFFDRTLDKDVVM--RSAMTV 364 (462)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~ 364 (462)
...+...|++++|+..++..+ + .|....+.. |.......|..+.|.++++....++-.. -..-.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l-------~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGD 167 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQAL-------A-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGD 167 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHH-------c-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhh
Confidence 346778888888888887632 1 122222322 3345566788888888887776553322 222345
Q ss_pred HHHhcCChHHHHHHHHHHHHCC
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHG 386 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g 386 (462)
.+...|+-++|..-|+.....+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHcc
Confidence 6777788888888888777754
No 381
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.23 E-value=1.1e+02 Score=27.89 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCcchHHHHhccCC-------CCCccchH--HHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHh-H
Q 036356 329 TVLIDMYAKCGSVDLAPMFFDRTL-------DKDVVMRS--AMTVGYGLHGLGEEGWVLFHHIRK-----HGIEPRHQ-H 393 (462)
Q Consensus 329 ~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~-~ 393 (462)
..++....+.++.++|.+.++++. +|+.+.|. ...+.+...||..++.+.+++..+ .|++|+++ .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 344455556667777777777665 35555553 455666778888888888888777 47887643 4
Q ss_pred HHHHHHHHHh-cCChHH
Q 036356 394 YARVVDLLAR-AGYSNH 409 (462)
Q Consensus 394 ~~~li~~~~~-~g~~~~ 409 (462)
|..+-.-|.+ .|++..
T Consensus 159 fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 5555444443 354443
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.91 E-value=56 Score=23.40 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=31.9
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhCCC---CchhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYR---NNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (462)
..+.|++..|.+.+.+.++......... +-....-.+.......|+.++|...+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567889999888887665332222211 011122223344556677777777766554
No 383
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.42 E-value=2.5e+02 Score=25.68 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCcc---------------------
Q 036356 299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV--------------------- 357 (462)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------------------- 357 (462)
++.+....++.. +++.+..| +-..+|..+.++--..++..|.+.|..
T Consensus 36 ~~~~~~e~l~~~-----Ird~~Map-------~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev 103 (393)
T KOG0687|consen 36 QKAAAREKLLAA-----IRDEDMAP-------LYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEV 103 (393)
T ss_pred cCHHHHHHHHHH-----HHhcccch-------HHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred --chHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHhHHHHHHHHHHhcCC-----hHHHHHHHHhC---CCCCCH
Q 036356 358 --MRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPRHQHYARVVDLLARAGY-----SNHAFKFIMNM---PIELRL 423 (462)
Q Consensus 358 --~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m---~~~p~~ 423 (462)
.+-....-||+.||.+.|++.+.+-.+. |.+.|...+.+=+..+.-..+ +++|..++++- .-+...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 424 SVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
.+|..+..... +++.+|...+.+-+
T Consensus 184 KvY~Gly~msv--R~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGLYCMSV--RNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHH--HhHHHHHHHHHHHc
No 384
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.05 E-value=3.5e+02 Score=27.19 Aligned_cols=150 Identities=13% Similarity=0.049 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHH-HHcCCChhHHHHHhhHHHHHHH--HhhCCCCchh
Q 036356 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG-YAKNGYAEEAVKLFPKWMDYYI--GKSEYRNNVI 326 (462)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~--~~~~~~p~~~ 326 (462)
...+.++++...+.|.. .+-...=.+...+ +....+++.|..+|.....+.. ...| +..
T Consensus 228 ~~~a~~~~~~~a~~g~~---------------~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~ 289 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---------------EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPP 289 (552)
T ss_pred hhHHHHHHHHHHhhcch---------------HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCc
Confidence 46788888888887752 1111111222233 5577899999999988533200 1133 333
Q ss_pred HHHHHHHHHHhcC-----CcchHHHHhccCCC-CCccchHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036356 327 VNTVLIDMYAKCG-----SVDLAPMFFDRTLD-KDVVMRSAMTVGYGL---HGLGEEGWVLFHHIRKHGIEPRHQHYARV 397 (462)
Q Consensus 327 ~~~~li~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 397 (462)
...-+..+|.+.. +.+.|..++....+ .+...--.|...|.. ..+...|.++|......|..+-..-...+
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~ 369 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC 369 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4555666676644 44568888876543 222222222222222 24577888888888887764432222111
Q ss_pred -HHHHHhcCChHHHHHHHHhC
Q 036356 398 -VDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 398 -i~~~~~~g~~~~A~~~~~~m 417 (462)
..+..-..+.+.|..++++.
T Consensus 370 y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHH
Confidence 11222334667777777766
No 385
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.87 E-value=39 Score=21.27 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036356 396 RVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALL 430 (462)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~ 430 (462)
.+.-++.+.|++++|.+..+.+ .++|+..-...|-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4556889999999999999998 7778765544443
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.67 E-value=89 Score=26.02 Aligned_cols=32 Identities=13% Similarity=-0.128 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 418 PIELRLSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 418 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
...|+..+|..++.++...|+.++|.....++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66899999999999999999999998776654
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.44 E-value=1.4e+02 Score=23.00 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 378 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
-++.+..-++-|+......-+.++-+.+++..|.++|+-.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444455555555555555555555555555555554
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.11 E-value=94 Score=29.49 Aligned_cols=60 Identities=10% Similarity=-0.072 Sum_probs=47.0
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKH------GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+.-.|++.++-.||+..|+++++.+.-. .+.+- ..+|-.+.-+|.-.+++.+|.+.|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999999998876433 23332 556778888999999999999999876
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.90 E-value=4.6e+02 Score=27.70 Aligned_cols=220 Identities=11% Similarity=0.004 Sum_probs=116.1
Q ss_pred HHhcCCcccHHHHhhccC----CCCcc-------hHHHHHHHHH--hCc-hHHHHHHHhhhc--------CCcchHHHHH
Q 036356 184 YAKCGSVDLAPMFFDRTL----DKDVV-------MRSAMIVGYG--LHE-WSAFGSFDGLLS--------NEENEYGTAL 241 (462)
Q Consensus 184 ~~~~g~~~~a~~~~~~m~----~~~~~-------~~~~li~~~~--~~~-~~a~~~~~~m~~--------~~~~~~~~ll 241 (462)
.....++++|..++.+.. .|+.. .|+.+-.... +.. +.|.++-+.... +....+.++.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 445688899988887643 33222 3444432222 222 777777666555 5566677778
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH--HHHcCCChh--HHHHHhhHHHHHHHH
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS--GYAKNGYAE--EAVKLFPKWMDYYIG 317 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~--~~~~~~~~~--~a~~~~~~~~~~~~~ 317 (462)
.+..-.|+++.|..+.....+..-.-+. +-...|..+.. .+-..|+.. +.+..|...-.....
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~-------------~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDV-------------YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 8888899999999888777665322111 11222333322 344566333 333333332111121
Q ss_pred hhCC-CCchhHHHHHHHHHHhcC-CcchHHHHhccCC--CCC--cc--chHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356 318 KSEY-RNNVIVNTVLIDMYAKCG-SVDLAPMFFDRTL--DKD--VV--MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 318 ~~~~-~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~--~~~--~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 389 (462)
.... .+-.-++..+..++.+.. ...++..-++--. .|. .. .+..|.......|+.++|...++++......+
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 1111 122345555556665521 1122222222111 111 11 22367788888999999999999988874444
Q ss_pred C----HhH--HHHHHHHHHhcCChHHHHHHHHh
Q 036356 390 R----HQH--YARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 390 ~----~~~--~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
+ ... +.+-+......|+.++|.....+
T Consensus 652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2 222 22223334567888888777666
No 390
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.85 E-value=55 Score=21.66 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=34.5
Q ss_pred CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356 353 DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 404 (462)
.|....++.++..+++..-.+.++..+.+...+|. .+..+|.--+..+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 35556677777777777777888888888887765 4566666666666654
No 391
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=40.72 E-value=3.3e+02 Score=26.01 Aligned_cols=87 Identities=8% Similarity=0.094 Sum_probs=51.2
Q ss_pred HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC-CCCcc--chHHHH---HH-----HHhcCChHHHHHHHHHHHH
Q 036356 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL-DKDVV--MRSAMT---VG-----YGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 316 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~--~~~~li---~~-----~~~~~~~~~a~~~~~~m~~ 384 (462)
+....+.||..+.|.+...++..-..+-...+|+-.. +.|.. -+-.|| .+ -.+...-+++.++++.|..
T Consensus 174 LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 174 LDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 4456789999998888888777777777777777554 33333 222222 11 1223345788888888876
Q ss_pred CCCCCCHhHHHHHHHHHH
Q 036356 385 HGIEPRHQHYARVVDLLA 402 (462)
Q Consensus 385 ~g~~p~~~~~~~li~~~~ 402 (462)
.--.-|..-+-.|..-|+
T Consensus 254 ~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hcccccchhHHHHHHHHh
Confidence 522233444445544443
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.65 E-value=1.1e+02 Score=30.86 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=62.4
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcc------hHHHHhccCC-CCCccchHHH
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD------LAPMFFDRTL-DKDVVMRSAM 362 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~l 362 (462)
+++.+|..+|++-.+.++++..++ ...|-+.-...||..|+...+.|.++ .|.++++... .-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~---~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID---HNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 789999999999999999988652 34455555778899999999999765 4445554443 3467777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~ 384 (462)
+.+-...-+.....-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665544333444444444443
No 393
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.33 E-value=3.9e+02 Score=26.71 Aligned_cols=110 Identities=9% Similarity=-0.032 Sum_probs=74.5
Q ss_pred hccCCChhhHHHHHHhh------------------------cCCCcchHHH---HHHhhcCccchhhHHHHHHHHHHhcC
Q 036356 62 HLWSRTEWSAFGSFDGL------------------------LSNEENEYGT---ALDCSCDLEFLEQGKIVHGFMIKLGL 114 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m------------------------~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~g~ 114 (462)
+-.+|+.+-|-++++.. .+-|..-|-+ -|..+.+.|.+..|+++..-+.+..+
T Consensus 294 ~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp 373 (665)
T KOG2422|consen 294 FRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDP 373 (665)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 77788887777776655 1122222322 25566788999999999999999887
Q ss_pred CcchhHHHHHhhhcCCCCCeeeHHHHHHHHH-hCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC
Q 036356 115 ELESDLLISLTAVCRYQPNVTLRNAMISGYA-KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS 189 (462)
Q Consensus 115 ~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 189 (462)
..|+.....+|+.|+ ++.+++--+++++... .......-|+...-.+|...|.+...
T Consensus 374 ----------------~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e--~~n~l~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 374 ----------------SEDPLGILYLIDIYALRAREYQWIIELSNEPE--NMNKLSQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred ----------------cCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH--hhccHhhcCCchHHHHHHHHHHhcCC
Confidence 668888888999875 7788999998888852 01233345665444556666665544
No 394
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.17 E-value=3.8e+02 Score=26.18 Aligned_cols=179 Identities=10% Similarity=-0.087 Sum_probs=101.7
Q ss_pred CccchhhhHHHHHHHHHhCCC-cchHHHHHHHHhhcCCCCHhHHHHHHHHH-HcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356 246 DLEFLEQGKIVHGFMIKLGLE-LESDLLISLTAVCRYQPNVTLWNAMISGY-AKNGYAEEAVKLFPKWMDYYIGKSEYRN 323 (462)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~p 323 (462)
-.|+..+|++-...|.+---. |.+.. + +........++..| +..|.++.|+.-|.... +.--..
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~L----l-----r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~-----k~t~~~ 400 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLL----L-----RAHEAQIHMLLGLYSHSVNCYENAEFHFIEAT-----KLTESI 400 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHH----H-----HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHH-----HhhhHH
Confidence 578889998888888764321 11000 0 01111223344444 45688999999997742 222222
Q ss_pred chhHH--HHHHHHHHhcCCcchHHHHhccCCCCCccchHH--------HHHHH--HhcCChHHHHHHHHHHHHCC-----
Q 036356 324 NVIVN--TVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA--------MTVGY--GLHGLGEEGWVLFHHIRKHG----- 386 (462)
Q Consensus 324 ~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------li~~~--~~~~~~~~a~~~~~~m~~~g----- 386 (462)
|...+ ..+.-.|.+.|+.+.-.++++.+..+|..++++ ++.++ ...+++.+|..++.+-.+..
T Consensus 401 dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 401 DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 32222 234456888999999999999888777666543 22222 35789999999998877642
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHH-------HHHHHHHHHHccCC
Q 036356 387 IEPRHQHYARVVDLLARAGYSNHAFKFIMNM----PIELRLS-------VRRALLSAWKIPMQ 438 (462)
Q Consensus 387 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~-------~~~~l~~~~~~~~~ 438 (462)
.+........|-..+...|+..++.+.+.-. ...||.. .|..|..++-..|+
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGN 543 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchh
Confidence 1111223334445666778877776655432 3345543 33444455444443
No 395
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.30 E-value=3.1e+02 Score=24.91 Aligned_cols=23 Identities=26% Similarity=0.136 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHH
Q 036356 423 LSVRRALLSAWKIPMQQWENMLQ 445 (462)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~a~~~ 445 (462)
...|.-|+.+++.+|+.+-++..
T Consensus 321 lK~yaPLL~af~s~g~sEL~Ll~ 343 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELELLL 343 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHHHH
Confidence 45688899999999988766543
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.23 E-value=5.3e+02 Score=27.57 Aligned_cols=209 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred ehhh---hccCCChhhHHHHHHhh-------cCCCcchHHHHHHhhcCccch--hhHHHHHHHHHHhcCCcchhHHHHHh
Q 036356 58 LDLY---HLWSRTEWSAFGSFDGL-------LSNEENEYGTALDCSCDLEFL--EQGKIVHGFMIKLGLELESDLLISLT 125 (462)
Q Consensus 58 ~~~~---~~~~~~~~~A~~~~~~m-------~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~~~~~~l~~~~ 125 (462)
|..+ |...|+.++|+++|.+. ...-..-+-.++..+.+.+.. +..++.-++..+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p----------- 575 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNP----------- 575 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCc-----------
Q ss_pred hhcCCCCCeeeHHH------------HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC-ccc
Q 036356 126 AVCRYQPNVTLRNA------------MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDL 192 (462)
Q Consensus 126 ~~~~~~p~~~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~ 192 (462)
.-....+.. .+-.|.+....+-++.+++.+ ....-.++....+.++..|++.=+ ...
T Consensus 576 -----~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~l-----i~~~~~~~~~lht~ll~ly~e~v~~~~~ 645 (877)
T KOG2063|consen 576 -----EAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHL-----ISDNRLTSTLLHTVLLKLYLEKVLEQAS 645 (877)
T ss_pred -----hhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHH-----hHhccccchHHHHHHHHHHHHHHhhccC
Q ss_pred HHHHhhccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchH
Q 036356 193 APMFFDRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESD 270 (462)
Q Consensus 193 a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 270 (462)
...--++..+.+ +..-+..+.... -..-.++++. +....|....-.+.+.|+.++|+.++-..+.
T Consensus 646 ~~~kg~e~~E~~---~rekl~~~l~~s~~Y~p~~~L~~~--~~~~l~ee~aill~rl~khe~aL~Iyv~~L~-------- 712 (877)
T KOG2063|consen 646 TDGKGEEAPETT---VREKLLDFLESSDLYDPQLLLERL--NGDELYEERAILLGRLGKHEEALHIYVHELD-------- 712 (877)
T ss_pred chhccccchhhh---HHHHHHHHhhhhcccCcchhhhhc--cchhHHHHHHHHHhhhhhHHHHHHHHHHHhc--------
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHH
Q 036356 271 LLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335 (462)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 335 (462)
+++.|..+... .-+ ...++...|..++..|
T Consensus 713 -----------------------------d~~~A~~Yc~~-----~y~-~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 713 -----------------------------DIDAAESYCLP-----QYE-SDKTNKEIYLTLLRIY 742 (877)
T ss_pred -----------------------------chhHHHHHHHH-----hcc-CCCcccHHHHHHHHHH
No 397
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=38.11 E-value=3.7e+02 Score=25.77 Aligned_cols=78 Identities=12% Similarity=0.042 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc-CCcchHHHHHHhhcCccc
Q 036356 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS-NEENEYGTALDCSCDLEF 249 (462)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~ 249 (462)
++..+-....+++.+.++.+....+..-...++.......+.++...+..+...+....+ +|...-...+.++...+.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 344455566666666666555555555555555544444445555444112222222222 444444455555544444
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.33 E-value=1.5e+02 Score=21.11 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=30.0
Q ss_pred HhcCChHHHHHHHHHHHHC----CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 367 GLHGLGEEGWVLFHHIRKH----GIEPR----HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~----g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.+.|++..|.+-+.+..+. +..+. ....-.+.......|++++|.+.+++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4577887776555444433 32221 122233445566778888888888876
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=36.52 E-value=1.3e+02 Score=26.71 Aligned_cols=87 Identities=8% Similarity=0.070 Sum_probs=45.8
Q ss_pred HHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcC
Q 036356 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 169 (462)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 169 (462)
|.+++..+++.++....-+--+..- +--..+...-|--|.|-|.+..+.++-.... ...+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pE----------------klPpkIleLCILLysKv~Ep~amlev~~~WL----~~p~ 149 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPE----------------KLPPKILELCILLYSKVQEPAAMLEVASAWL----QDPS 149 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcc----------------cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH----hCcc
Confidence 5666666666666554433332211 1223334444556677777777776666652 1111
Q ss_pred CCCCchHHHHHHHHHHh-----cCCcccHHHHh
Q 036356 170 YRNNVIVNTVLIDMYAK-----CGSVDLAPMFF 197 (462)
Q Consensus 170 ~~~~~~~~~~li~~~~~-----~g~~~~a~~~~ 197 (462)
.-+..-|.+++..|.. .|.+++|+++.
T Consensus 150 -Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 150 -NQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred -cCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1122336666655544 47777777766
No 400
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.51 E-value=93 Score=23.89 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 373 EEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
++..++|.-|.++|+--. +..|......+-..|++.+|.++++.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 446778999999888776 55677778888889999999988863
No 401
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.42 E-value=3.8e+02 Score=25.45 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHCCCC
Q 036356 373 EEGWVLFHHIRKHGIE 388 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~ 388 (462)
++..+-++.|+...+.
T Consensus 297 ~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 297 EKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHhhccC
Confidence 4566677777775443
No 402
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.82 E-value=2.9e+02 Score=23.85 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=62.7
Q ss_pred hhCCCCchhHHHHHHHHHHh--cCCcchHHHHhccCCCCCc-cch-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH
Q 036356 318 KSEYRNNVIVNTVLIDMYAK--CGSVDLAPMFFDRTLDKDV-VMR-SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH 393 (462)
Q Consensus 318 ~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~-~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 393 (462)
..++.+ .|..+++++.. .++++.|...+-.- .. .++ .-++.++...|+.+.|..+++...-.. .+...
T Consensus 72 ~f~ip~---~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~ 143 (226)
T PF13934_consen 72 AFGIPP---KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEA 143 (226)
T ss_pred HhCCCH---HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHH
Confidence 445544 34445666543 45677777766433 22 122 247777777888888888877755321 12233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 036356 394 YARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKI 435 (462)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 435 (462)
...++.. ..++.+.+|..+.+...-.-....+..++..+..
T Consensus 144 ~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 144 LTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 3333444 5668888888877776322224467777766663
No 403
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=35.78 E-value=81 Score=17.47 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036356 371 LGEEGWVLFHHIRKHGIEPRHQHYARV 397 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~g~~p~~~~~~~l 397 (462)
.++.|..+|++... +.|+..+|...
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 35677777777777 56777766543
No 404
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=35.45 E-value=1.8e+02 Score=21.38 Aligned_cols=77 Identities=13% Similarity=-0.063 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
++|.-+-+-+...+-. ....--+=+..+...|++++|..+.+... -||...|-+|-..- .|-.......+.++...
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce~r--lGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCEWR--LGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHHHh--hccHHHHHHHHHHHHhC
Confidence 5555555555542211 11112222335566777777777777764 57777776665542 34333344444444333
Q ss_pred C
Q 036356 453 G 453 (462)
Q Consensus 453 ~ 453 (462)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 3
No 405
>PRK02287 hypothetical protein; Provisional
Probab=34.94 E-value=2.5e+02 Score=22.92 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChHHHHHH
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR-ALLSAWKIPMQQWENMLQ 445 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~l~~~~~~~~~~~~a~~~ 445 (462)
..+..++..++.-.|..++|.++++.....++....| .++..|....+.++-+..
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~ 162 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEI 162 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 4566778888888899999999988886666666555 588888888776655533
No 406
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=34.25 E-value=3.5e+02 Score=24.29 Aligned_cols=87 Identities=10% Similarity=0.003 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCcchHHHH----hccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH---
Q 036356 330 VLIDMYAKCGSVDLAPMF----FDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLA--- 402 (462)
Q Consensus 330 ~li~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--- 402 (462)
.=|++++..+++.++... |+.-.+-.......-|-.|.+.+.+..+.++-..-...--.-+...|.++.+.|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347888888888887643 3333333344445556778888888888887777666422222344666655554
Q ss_pred --hcCChHHHHHHHHh
Q 036356 403 --RAGYSNHAFKFIMN 416 (462)
Q Consensus 403 --~~g~~~~A~~~~~~ 416 (462)
=.|.+++|+++...
T Consensus 168 LlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVG 183 (309)
T ss_pred HhccccHHHHHHHHhc
Confidence 45899999888843
No 407
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=33.72 E-value=1.2e+02 Score=20.84 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-hHHHHHHHh
Q 036356 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-WSAFGSFDG 228 (462)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~-~~a~~~~~~ 228 (462)
..+.++++.++.+....+.+.+..+|...-...+.++.+-| +++...+.+
T Consensus 19 ~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~ 69 (88)
T PF13646_consen 19 EAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPALIK 69 (88)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHHH
T ss_pred HHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34444444433332222333333344444444444444444 333333333
No 408
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=33.62 E-value=4.4e+02 Score=25.29 Aligned_cols=232 Identities=10% Similarity=-0.018 Sum_probs=139.5
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE- 219 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~- 219 (462)
|+++...| +.+...+-.. ... .++...+.....++....+...+..+++.+..++........+++..-+
T Consensus 45 LdgL~~~G--~~a~~~L~~a-----L~~--d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSA-----LAE--ADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHhh--HhHHHHHHHH-----Hhh--CCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc
Confidence 67777788 5666666553 211 2333444444444443333333666777777777778888889998888
Q ss_pred hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcC
Q 036356 220 WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKN 298 (462)
Q Consensus 220 ~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~ 298 (462)
..+...+..+.+ ++...-...+.++...+. + +...+....+ .+|...-..-+.++...
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~-------------------d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH-D-PGPALEAALT-------------------HEDALVRAAALRALGEL 174 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc-------------------CCCHHHHHHHHHHHHhh
Confidence 777777777776 666666666676665432 2 2233333332 25666666667777776
Q ss_pred CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhcc-CCCCCccchHHHHHHHHhcCChHHHHH
Q 036356 299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR-TLDKDVVMRSAMTVGYGLHGLGEEGWV 377 (462)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 377 (462)
+..+... .+... --.+|..+=..-+.+....|. ..|...... ..+++....-.+...+...|. +++.+
T Consensus 175 ~~~~a~~-~L~~a--------l~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~ 243 (410)
T TIGR02270 175 PRRLSES-TLRLY--------LRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQA 243 (410)
T ss_pred ccccchH-HHHHH--------HcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHH
Confidence 6643332 23231 122455555566777777777 566655554 445565555555555554444 46777
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036356 378 LFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418 (462)
Q Consensus 378 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 418 (462)
.+..+.+. +. +-...+.++.+.|+..-+.-+.+.|.
T Consensus 244 ~L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 244 WLRELLQA---AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHhcC---hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 77666653 22 55677788888888887777777774
No 409
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=32.70 E-value=54 Score=31.27 Aligned_cols=35 Identities=14% Similarity=-0.016 Sum_probs=23.5
Q ss_pred CCCCCCCCCChHHHHHhhccCCCCccchhhhHhHh
Q 036356 3 VAWVAPNGCTPPLVLKACVALPSLLMGPRVHGQIF 37 (462)
Q Consensus 3 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 37 (462)
.+|+.||.++|.+=..+--+.-+...|++.++.++
T Consensus 408 sa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI 442 (650)
T KOG4334|consen 408 SAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI 442 (650)
T ss_pred cccccccccccccccccchHHHHHHHHHHHHHHhc
Confidence 35788888888765555555555666777777664
No 410
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=32.20 E-value=81 Score=21.49 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=28.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036356 368 LHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 405 (462)
..++.+.+.+++++..+.|..|.......+..+..+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46788899999999998888887777776776665554
No 411
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.18 E-value=4e+02 Score=24.44 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=37.0
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHh---ccCCCCC--ccchH-HHHHHH
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF---DRTLDKD--VVMRS-AMTVGY 366 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~---~~~~~~~--~~~~~-~li~~~ 366 (462)
+-.+.|+..+|.+.|++. +++..+..-...-..||.++....-+.+...++ +++..|. ..+|+ +|+++-
T Consensus 284 CARklGrlrEA~K~~RDL----~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~R 358 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDL----MKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTR 358 (556)
T ss_pred HHHHhhhHHHHHHHHHHH----hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHH
Confidence 445678999999998884 233222212233445677776665555555444 4444443 33454 344443
No 412
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.75 E-value=1.4e+02 Score=22.26 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 409 (462)
.++..+...+..-.|.++++.+.+.+..++..|.-..++.+.+.|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4556666666677889999999988877788887788888888886554
No 413
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.65 E-value=72 Score=16.56 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=13.4
Q ss_pred cchhhHHHHHHHHHHhc
Q 036356 97 EFLEQGKIVHGFMIKLG 113 (462)
Q Consensus 97 ~~~~~a~~~~~~m~~~g 113 (462)
|+.+.+..+|+++.+..
T Consensus 1 ~~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 1 GDIERARKIYERALEKF 17 (33)
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 46788889999988764
No 414
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.60 E-value=3.7e+02 Score=23.80 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHH
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 362 (462)
-|......+...|.+.|++.+|+..|-. |-.|+...+..++.-....|...++--. ....
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~---------~~~~~~~~~~~ll~~~~~~~~~~e~dlf-----------i~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL---------GTDPSAFAYVMLLEEWSTKGYPSEADLF-----------IARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT---------S-HHHHHHHHHHHHHHHHHTSS--HHHH-----------HHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh---------cCChhHHHHHHHHHHHHHhcCCcchhHH-----------HHHH
Confidence 4666677778889999999999988854 3344445554455555555555444211 1223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~ 385 (462)
+--|.-.++...|...++...+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 44455567777787777666654
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.57 E-value=2.1e+02 Score=22.61 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcc
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 191 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 191 (462)
-..++..+...++.-.|.++|+++ ...+...+..|-..-++.+...|=+.
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l-----~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEEL-----REEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHH-----HHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 446777788887778899999997 66666666666555777777777443
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.51 E-value=83 Score=27.55 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=35.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 197 (462)
-+..-|.+.|++++|.++|+.+....-.+.-..+...+...+..++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45566777888888888887762111112223444556666677777777777665543
No 417
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.86 E-value=3.6e+02 Score=23.51 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=38.6
Q ss_pred hHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356 343 LAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391 (462)
Q Consensus 343 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 391 (462)
.+..+|+-.-+|.......++..|. .+++++|.+++.++-+.|+.|..
T Consensus 226 n~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 226 NQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred chhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 4566777777788887777777765 67899999999999999998863
No 418
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.62 E-value=2.8e+02 Score=24.19 Aligned_cols=105 Identities=14% Similarity=0.008 Sum_probs=68.9
Q ss_pred hcCCcchHHHHhccCC--CCCccch-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChHHHHH
Q 036356 337 KCGSVDLAPMFFDRTL--DKDVVMR-SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-QHYARVVDLLARAGYSNHAFK 412 (462)
Q Consensus 337 ~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~ 412 (462)
...++..|...+.+.. .|+..+| +.=+-++.+..+++.+..=-.+..+ +.||. .....+-..+.....+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3445677777666554 4666554 4556677778888888777666666 78884 445556666777778888888
Q ss_pred HHHhC-------CCCCCHHHHHHHHHHHHccCChHHHH
Q 036356 413 FIMNM-------PIELRLSVRRALLSAWKIPMQQWENM 443 (462)
Q Consensus 413 ~~~~m-------~~~p~~~~~~~l~~~~~~~~~~~~a~ 443 (462)
.+.+. ++.|..-.+..|..+=...-...++.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~ 137 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEK 137 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHH
Confidence 77766 45566667777777755444443333
No 419
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.54 E-value=1.6e+02 Score=26.53 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---------CCCcc
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---------DKDVV 357 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~ 357 (462)
.-...+..+...|++..|+++..+...- .. + ...|+++=+.- .++++-....+++. .-|+.
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~-~----l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~ 198 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQL--LE-E----LKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPD 198 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--HH-h----cccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3445567777889999999888763221 11 1 11111111111 11222222222222 35788
Q ss_pred chHHHHHHHHhcCChHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLF 379 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~ 379 (462)
.|..+..+|...|+.+.+.+-+
T Consensus 199 ~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 199 KYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
Confidence 8999999998888776655433
No 420
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.52 E-value=3.6e+02 Score=23.29 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=51.7
Q ss_pred chHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 036356 358 MRSAMTVGYGL--HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIEL-RLSVRRALLSAWK 434 (462)
Q Consensus 358 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~ 434 (462)
.|..++.++.. +++++.|.+.+-+- .+.|+.. .-++.++...|+.+.|+.+++.++-.+ +......++.. .
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-H
Confidence 35567777664 46677777666222 2334322 247788888999999999999994222 33333444444 5
Q ss_pred ccCChHHHHHH
Q 036356 435 IPMQQWENMLQ 445 (462)
Q Consensus 435 ~~~~~~~a~~~ 445 (462)
..+.+.||...
T Consensus 152 a~~~v~EAf~~ 162 (226)
T PF13934_consen 152 ANGLVTEAFSF 162 (226)
T ss_pred HcCCHHHHHHH
Confidence 66788888743
No 421
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.30 E-value=5.8e+02 Score=25.67 Aligned_cols=111 Identities=10% Similarity=-0.038 Sum_probs=63.8
Q ss_pred hhHHHHHHHHhhhhhhhhcCC-CCCchHHHHHHHH-HHhcCCcccHHHHhhccCC--------CCcchHHHHHHHHHhCc
Q 036356 150 AEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLIDM-YAKCGSVDLAPMFFDRTLD--------KDVVMRSAMIVGYGLHE 219 (462)
Q Consensus 150 ~~~a~~~~~~m~~~~~~~~~~-~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~ 219 (462)
...|.++++.. ...|. .+-...-.....+ +....|.+.|..+|+...+ -+......+-.+|.+..
T Consensus 228 ~~~a~~~~~~~-----a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREA-----AKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHH-----HhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 45677777775 33332 2222222222333 4566788888888876633 13445556666666643
Q ss_pred -------hHHHHHHHhhhc---CCcchHHHHHHhhcC-ccchhhhHHHHHHHHHhCC
Q 036356 220 -------WSAFGSFDGLLS---NEENEYGTALDCSCD-LEFLEQGKIVHGFMIKLGL 265 (462)
Q Consensus 220 -------~~a~~~~~~m~~---~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~ 265 (462)
+.|+.++...-. |+...+-..+.-... ..+...|.++|....+.|.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 457777776655 444444333333333 3567788888888888875
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.20 E-value=40 Score=26.06 Aligned_cols=30 Identities=13% Similarity=0.402 Sum_probs=23.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036356 369 HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 400 (462)
.|.-..|..+|.+|.++|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3455678999999999999997 46666654
No 423
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=29.38 E-value=3.3e+02 Score=22.56 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch-hHHHHHHHHHHhcC
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV-IVNTVLIDMYAKCG 339 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g 339 (462)
|...+.-+++..+..++.+++++.+...-..-.+.|+- .++..+..+|...+
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 44444455555665667777766654444445566763 55666666665543
No 424
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=29.25 E-value=7e+02 Score=26.31 Aligned_cols=57 Identities=11% Similarity=-0.138 Sum_probs=35.7
Q ss_pred Cceeehhh--hccCCChhhHHHHHHhh-cCCC-cc-hHHHHHHhhcCccchhhHHHHHHHHH
Q 036356 54 TIVFLDLY--HLWSRTEWSAFGSFDGL-LSNE-EN-EYGTALDCSCDLEFLEQGKIVHGFMI 110 (462)
Q Consensus 54 ~~~~~~~~--~~~~~~~~~A~~~~~~m-~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~ 110 (462)
++..|..+ +.+.|+.+.|.++.++. ..++ .. .+.....++.+.-+...=.++--++.
T Consensus 325 ~~P~W~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~ 386 (835)
T KOG2168|consen 325 NVPLWPLVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLR 386 (835)
T ss_pred CccchHHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCCCccccHHHHHHHH
Confidence 35677777 88999999999999988 3332 22 23333667766655444444444443
No 425
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=29.17 E-value=5e+02 Score=24.56 Aligned_cols=84 Identities=11% Similarity=-0.077 Sum_probs=53.8
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH------------HHHHHhcCCcchHHHHhccCC-----
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL------------IDMYAKCGSVDLAPMFFDRTL----- 352 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~----- 352 (462)
.+...+-..|++++|..++.+ ..+.||+++ ++.|...+|+-.|.-+-+++.
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~e------------l~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~ 203 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCE------------LQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFE 203 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHh------------cchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcC
Confidence 345566778999999888866 234455444 344566677777665555543
Q ss_pred CCCc-----cchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356 353 DKDV-----VMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 353 ~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (462)
+||. .-|+.+++.....+.+=.+.+.++.....
T Consensus 204 ~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 204 KPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred CccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 2443 24777777777777777777777776654
No 426
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=28.68 E-value=2.9e+02 Score=26.79 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=60.6
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 210 (462)
.|+..-..+.| +...|+++.+.+.+.. .+..+.....+-..+++..-+.|++++|..+-+.|......+-..
T Consensus 322 ~p~~i~l~~~i--~~~lg~ye~~~~~~s~------~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 322 DPVLIQLRSVI--FSHLGYYEQAYQDISD------VEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEV 393 (831)
T ss_pred CchhhHHHHHH--HHHhhhHHHHHHHhhc------hhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhh
Confidence 46665555444 4667999999999988 355566677888899999999999999998877665322221111
Q ss_pred HHHH---HHhCc--hHHHHHHHhhhc
Q 036356 211 MIVG---YGLHE--WSAFGSFDGLLS 231 (462)
Q Consensus 211 li~~---~~~~~--~~a~~~~~~m~~ 231 (462)
+--+ --.-+ ++++-.|++...
T Consensus 394 ~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 394 LTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred eeeecccHHHHhHHHHHHHHHHHHhc
Confidence 1101 11112 677777777666
No 427
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.51 E-value=1.3e+02 Score=22.62 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 409 (462)
.++..+...+..-.|.++++.+.+.|...+..|.-.-++.+.+.|-..+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 5666777777778889999999988888887777777788888775443
No 428
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=27.14 E-value=5.8e+02 Score=24.67 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 394 YARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
...|+.-|...|+..+|.+.++++ ++-....++.+++.+.-+.|+...-+.++.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~ 568 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKE 568 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 466888999999999999999998 4445677899999999999886545544443
No 429
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.97 E-value=1.7e+02 Score=21.62 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m 160 (462)
.++.-|...|++++|.+.+.++
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHh
Confidence 4566777778888888888776
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.88 E-value=5.5e+02 Score=24.30 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=30.0
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchh--HHHHHHHHHHh--cCCcchHHHHhccCC
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI--VNTVLIDMYAK--CGSVDLAPMFFDRTL 352 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~ 352 (462)
.+.+.+++..|.++|.. +... ++++.. .+..+..+|.. .-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~-----l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEE-----LLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHH-----HHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45578888899888888 3333 444333 34444444432 444555666555443
No 431
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=26.79 E-value=8.4e+02 Score=26.41 Aligned_cols=138 Identities=12% Similarity=-0.017 Sum_probs=83.4
Q ss_pred CCCHhHHHHHHHHHHcCCChhH-HHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHH-HHhccCCCCCccch
Q 036356 282 QPNVTLWNAMISGYAKNGYAEE-AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP-MFFDRTLDKDVVMR 359 (462)
Q Consensus 282 ~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~ 359 (462)
.++...-.....++...+..+. +...+..+ --.++...-...+.++++.|..+.+. .+...+.++|...-
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~l--------l~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR 824 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRAL--------TGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVR 824 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHH--------hcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHH
Confidence 4666666677777777765432 23333331 12356777778889999998876553 34445556666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLS 431 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~ 431 (462)
..-+.++...+. +++...+..+.+ .|+...-...+.++.+.+....+...+...--.+|..+-..-..
T Consensus 825 ~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 825 QGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred HHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 677788887776 456666666664 46767777777777775334455555555522445544443333
No 432
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.56 E-value=1.1e+02 Score=20.35 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=36.0
Q ss_pred CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356 232 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297 (462)
Q Consensus 232 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 297 (462)
|....++.++...++-.-.+++...++...++|. -+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-----------------I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-----------------IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----------------S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHH
Confidence 5666778888888888889999999999999885 455566655555554
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.42 E-value=1.9e+02 Score=23.99 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=12.6
Q ss_pred HHHHHhcCCcchHHHHhccCC
Q 036356 332 IDMYAKCGSVDLAPMFFDRTL 352 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~ 352 (462)
+-.|.+.|.+++|.+++++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 344666666666666666544
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.42 E-value=4.2e+02 Score=23.04 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=24.3
Q ss_pred HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHH
Q 036356 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI 273 (462)
Q Consensus 239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (462)
.+...+-+.++++++...+..+...+..++..-.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERn 40 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERN 40 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHH
Confidence 34566678899999999999999987654443333
No 435
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.37 E-value=3.3e+02 Score=21.52 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcc
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 342 (462)
-..++..+.+.+..-.|.+++.+ +.+.+...+..|.---++.+...|-+.
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~-----l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEE-----LREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHH-----HHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 34677778888888899999998 777777777666555678888877543
No 436
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=26.34 E-value=4.2e+02 Score=22.82 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccC
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRT 351 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~ 351 (462)
||--+..-|...|++++|..+|+-.
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHH
Confidence 4444444555555555555555433
No 437
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.00 E-value=3.1e+02 Score=21.09 Aligned_cols=45 Identities=9% Similarity=0.187 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
++...+|..|.++|+. .--+..|......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG---------------~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIG---------------TKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcc---------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5578899999999985 34455677777778888999999988853
No 438
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.82 E-value=5.1e+02 Score=23.62 Aligned_cols=74 Identities=5% Similarity=0.025 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHH
Q 036356 103 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182 (462)
Q Consensus 103 ~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~ 182 (462)
.++++.|...++ +|.-++|.-+.-.+...=.+.+.+.+|+.+ -.|..-|..|+.
T Consensus 263 ~EL~~~L~~~~i----------------~PqfyaFRWitLLLsQEF~lpDvi~lWDsl----------~sD~~rfd~Ll~ 316 (370)
T KOG4567|consen 263 EELWRHLEEKEI----------------HPQFYAFRWITLLLSQEFPLPDVIRLWDSL----------LSDPQRFDFLLY 316 (370)
T ss_pred HHHHHHHHhcCC----------------CccchhHHHHHHHHhccCCchhHHHHHHHH----------hcChhhhHHHHH
Confidence 355666666666 677777776666666777777777777775 122222555555
Q ss_pred HHHh----------cCCcccHHHHhhccCC
Q 036356 183 MYAK----------CGSVDLAPMFFDRTLD 202 (462)
Q Consensus 183 ~~~~----------~g~~~~a~~~~~~m~~ 202 (462)
.||. .||+....++++.-..
T Consensus 317 iCcsmlil~Re~il~~DF~~nmkLLQ~yp~ 346 (370)
T KOG4567|consen 317 ICCSMLILVRERILEGDFTVNMKLLQNYPT 346 (370)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhcCCC
Confidence 5543 3666666666655443
No 439
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.37 E-value=9.6e+02 Score=26.60 Aligned_cols=169 Identities=10% Similarity=-0.024 Sum_probs=101.8
Q ss_pred hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhh---------c---CCCC--HhHHHHHHHHHHcCCChhHHHHHh
Q 036356 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC---------R---YQPN--VTLWNAMISGYAKNGYAEEAVKLF 308 (462)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------~---~~~~--~~~~~~li~~~~~~~~~~~a~~~~ 308 (462)
+|...|...+|...|.+... |+.-+. ....++... | ..+. ..-|..+++.+-+.+..|.+.++-
T Consensus 929 ~yl~tge~~kAl~cF~~a~S-g~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALS-GFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred eeecCCchHHHHHHHHHHhh-ccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 36677788888888887654 333333 333333331 1 1222 334778888888889899888887
Q ss_pred hHHHHHHHHhhCC-CCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccchHHHHHHHHhcCCh------------
Q 036356 309 PKWMDYYIGKSEY-RNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLG------------ 372 (462)
Q Consensus 309 ~~~~~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~------------ 372 (462)
...+.+ .+. .|+ ..+++++.+-....|.+-+|...+-.... .-..+...|+..++.+|.+
T Consensus 1007 ~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1007 VKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 765431 111 132 45678888888888998888877655442 2233566777788888776
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 373 EEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
++....+.+-..+..... ...|+.|-.-+...+++.+|-.+.-+.
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEy 1128 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEY 1128 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 344442222222222223 445666666667888998887765543
No 440
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=25.35 E-value=2.5e+02 Score=19.93 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=38.6
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 036356 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~ 441 (462)
+.++++.+.+.|+. +..-...+-.+-...|+.+.|.++++.+...|+ -|..+++++...|...-
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~rg~~--aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIVQKEG--WFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHcCchhh
Confidence 44667777776642 222333333223356788888888888763343 47778888877776443
No 441
>PRK09857 putative transposase; Provisional
Probab=24.88 E-value=3.3e+02 Score=24.61 Aligned_cols=63 Identities=8% Similarity=0.016 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCC
Q 036356 394 YARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKT 456 (462)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 456 (462)
+..++.-..+.|+.++..++++.. ...+.....-++..-+.+.|..++++....+|+..|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 334444444556655555555444 112223334456666666666666776777777777654
No 442
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.84 E-value=4.2e+02 Score=26.72 Aligned_cols=23 Identities=4% Similarity=-0.246 Sum_probs=16.0
Q ss_pred HHHHhhccCCCCccchhhhHhHh
Q 036356 15 LVLKACVALPSLLMGPRVHGQIF 37 (462)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~ 37 (462)
..+..+.-.|.++.|.++++.-.
T Consensus 153 ~~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 153 DYVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHHHHHTT-HHHHHHHH-TTT
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc
Confidence 47778888899999888884443
No 443
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=24.49 E-value=2.4e+02 Score=19.31 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=41.9
Q ss_pred CCCcchHHHHHHHHHhCc-hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356 202 DKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262 (462)
Q Consensus 202 ~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 262 (462)
+++...-...+..+++.+ .++...+.++.. +|..+-...+.++.+.|. +++...+..+..
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~ 72 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD-PEAIPALIKLLQ 72 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHc
Confidence 556666666777777777 777777777777 888888888888888875 445555555444
No 444
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=4.9e+02 Score=22.84 Aligned_cols=117 Identities=9% Similarity=-0.088 Sum_probs=72.5
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhH-HHHHHHHHHhcCCcchHHHHhccCC--CCCccchH-HHHHHHHhcC
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIV-NTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRS-AMTVGYGLHG 370 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~-~li~~~~~~~ 370 (462)
|....++..|...+.+ .--+.|+..+ |..=+..+.+..+++.+..=-.+.. .||.+--. .+-.++....
T Consensus 20 ~f~~k~y~~ai~~y~r-------aI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSR-------AICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccchhhhchHHHHHHH-------HHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 6666677777776655 4557787744 4445566667777776654333333 24444333 3444556667
Q ss_pred ChHHHHHHHHHHHHC----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036356 371 LGEEGWVLFHHIRKH----GIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 418 (462)
.++.|+..+.+..+. .++|-......|..+=-..=...+..++.++..
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 889999998887443 455556677777766555555566666666653
No 445
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.29 E-value=1.2e+02 Score=23.73 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=13.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
|.-++.+.++++++.++++.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 44455555566666655555555
No 446
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.11 E-value=1.2e+02 Score=27.64 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=50.5
Q ss_pred ccchhhHHHHHHHHHHhcCC-cchhHHHHHhhhcC-----CCCCeeeH--HHHHHHHHhCCChhHHHHHHHHhhhhhhhh
Q 036356 96 LEFLEQGKIVHGFMIKLGLE-LESDLLISLTAVCR-----YQPNVTLR--NAMISGYAKNGYAEEAVKLFPKWMDYYIGK 167 (462)
Q Consensus 96 ~~~~~~a~~~~~~m~~~g~~-~~~~~l~~~~~~~~-----~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 167 (462)
.--+.+|+++|.+..+.|-. ...+--+.-++..+ ...|+.+| .-|.-+-.+.|+..+|.+.|+++ +++
T Consensus 229 a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL----~ke 304 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL----MKE 304 (556)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH----hhh
Confidence 34567788888888776530 00000112222222 12233333 23444455689999999999986 232
Q ss_pred cCCCCCchHHHHHHHHHHhcCCcccHHHHh
Q 036356 168 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFF 197 (462)
Q Consensus 168 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 197 (462)
..+..-..+...|+.++....-+..+..++
T Consensus 305 ~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 305 FPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222234455777777665555554444
No 447
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.51 E-value=6.2e+02 Score=24.93 Aligned_cols=89 Identities=8% Similarity=-0.026 Sum_probs=54.0
Q ss_pred hhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHh
Q 036356 166 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDC 243 (462)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~ 243 (462)
...|+..+......++. ...|++..|+.++++.. ..+..++..+...+.- .+...+..++.+
T Consensus 194 ~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~--------------~~~~~~~~l~~s 257 (484)
T PRK14956 194 KIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGY--------------HGIEFLTSFIKS 257 (484)
T ss_pred HHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCC--------------CCHHHHHHHHHH
Confidence 44566666666555543 34588888888887643 1222344333322211 455555666666
Q ss_pred hcCccchhhhHHHHHHHHHhCCCcchH
Q 036356 244 SCDLEFLEQGKIVHGFMIKLGLELESD 270 (462)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 270 (462)
....+....+..+++.+.+.|..|...
T Consensus 258 i~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 258 LIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 666666678999999999999765433
No 448
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.45 E-value=6e+02 Score=23.55 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=53.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhHHH--HHHHHHHhcCChHHHHHHHHhC--------CCCCCH-HHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKH---GIEPRHQHYA--RVVDLLARAGYSNHAFKFIMNM--------PIELRL-SVR 426 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m--------~~~p~~-~~~ 426 (462)
.++...-+.++.++|+++++++.+. --.|+...|. .....+...|+..++.+++++. ++.|+. ..|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444555667899999999999886 4556766654 4555667789999888887765 555633 355
Q ss_pred HHHHHHHHcc-CChH
Q 036356 427 RALLSAWKIP-MQQW 440 (462)
Q Consensus 427 ~~l~~~~~~~-~~~~ 440 (462)
..+-.-|.+. |++.
T Consensus 160 Y~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHhHH
Confidence 6665555544 4443
No 449
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.38 E-value=2.8e+02 Score=19.68 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHh
Q 036356 255 IVHGFMIKLGLELESDLLISLTAV 278 (462)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~ 278 (462)
++|+.....|+..|+.+|..+++.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildL 52 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDL 52 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHH
Confidence 788888889988777776666666
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.30 E-value=2.3e+02 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 036356 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAG 405 (462)
Q Consensus 372 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 405 (462)
.-.|.++++.+.+.+..++..|...-+..+.+.|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344455555554444444444434444444444
No 451
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.21 E-value=1.4e+03 Score=27.74 Aligned_cols=310 Identities=8% Similarity=-0.064 Sum_probs=0.0
Q ss_pred hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHH
Q 036356 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMI 141 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li 141 (462)
|+.-++++....+.. ..--..+..--|-.....|+++.|...|+++.+.+. +...+++-++
T Consensus 1430 Y~~i~dpDgV~Gv~~--~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q~~p-----------------~~~~~~~g~l 1490 (2382)
T KOG0890|consen 1430 YGSIHDPDGVEGVSA--RRFADPSLYQQILEHEASGNWADAAACYERLIQKDP-----------------DKEKHHSGVL 1490 (2382)
T ss_pred HHhcCCcchhhhHHH--HhhcCccHHHHHHHHHhhccHHHHHHHHHHhhcCCC-----------------ccccchhhHH
Q ss_pred HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHH-HHHHHhCc-
Q 036356 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM-IVGYGLHE- 219 (462)
Q Consensus 142 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l-i~~~~~~~- 219 (462)
......|.++.++-..+.. .....+-...-++.=+.+--+.++++..+.... ..+..+|.+. +..+.-..
T Consensus 1491 ~sml~~~~l~t~i~~~dg~-----~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~ 1562 (2382)
T KOG0890|consen 1491 KSMLAIQHLSTEILHLDGL-----IINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNK 1562 (2382)
T ss_pred HhhhcccchhHHHhhhcch-----hhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhc
Q ss_pred ---hHHH-HHHHhhhc---------CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHh
Q 036356 220 ---WSAF-GSFDGLLS---------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286 (462)
Q Consensus 220 ---~~a~-~~~~~m~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (462)
.-+. +..+.+.+ ....+|..-.....+....-+-....+...+.....+ ..-+..
T Consensus 1563 ~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~------------s~~~sd 1630 (2382)
T KOG0890|consen 1563 KKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDED------------SANNSD 1630 (2382)
T ss_pred ccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc------------ccccch
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccchHHHHH
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMTV 364 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~ 364 (462)
-|-.-+.--....+..+-.--+++.+...-.+.+..-. ..+|-...+..-+.|.++.|...+-+..+ .-...+--...
T Consensus 1631 ~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK 1710 (2382)
T KOG0890|consen 1631 NWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAK 1710 (2382)
T ss_pred hHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHH
Q ss_pred HHHhcCChHHHHHHHHHHHHC-------CCCCCHhHHHHHHHH--HHhcCChHHH
Q 036356 365 GYGLHGLGEEGWVLFHHIRKH-------GIEPRHQHYARVVDL--LARAGYSNHA 410 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~--~~~~g~~~~A 410 (462)
-....|+-..|+.++++-.+. ..++....-+.++.. ..+.+.|-+.
T Consensus 1711 ~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~e 1765 (2382)
T KOG0890|consen 1711 LLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEE 1765 (2382)
T ss_pred HHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHH
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.19 E-value=3.8e+02 Score=21.82 Aligned_cols=51 Identities=16% Similarity=0.028 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCccc
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 192 (462)
-..++..+...++.-.|.++++.+ .+.+...+..|-.--|+.+.+.|-+..
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L-----~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLL-----REAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHH-----HhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 335666666667777889999987 777777776665567777888776544
No 453
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=23.16 E-value=2.9e+02 Score=25.86 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=33.8
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccH
Q 036356 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLA 193 (462)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 193 (462)
|...--.++..|...|-.+.|.+.|+.+ .-+.++-|+..|. +..-+...|....+
T Consensus 216 n~~~~LlLvrlY~~LG~~~~A~~~~~~L-----~iK~IQ~DTL~h~-~~~r~~~~~~~~~~ 270 (365)
T PF09797_consen 216 NYQLKLLLVRLYSLLGAGSLALEHYESL-----DIKNIQLDTLGHL-ILDRLSTLGPFKSA 270 (365)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhc-----ChHHHHHHHhHHH-HHHHHhccCccccc
Confidence 4444445667788888888888888887 5666666666654 33333334444433
No 454
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=22.86 E-value=4.2e+02 Score=21.54 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChHHHH
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRR-ALLSAWKIPMQQWENM 443 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~l~~~~~~~~~~~~a~ 443 (462)
..+-.++..++.-.|.+++|.++++.....++..-.| -++..|.+..+..+..
T Consensus 115 Lss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s~eVv 168 (179)
T COG2042 115 LSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDSAEVV 168 (179)
T ss_pred hchHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccchHHHH
Confidence 5566788888888999999999999886556655444 6888888887765544
No 455
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=22.85 E-value=5.4e+02 Score=23.82 Aligned_cols=29 Identities=7% Similarity=-0.016 Sum_probs=23.7
Q ss_pred HHHHHHhhcCccchhhhHHHHHHHHHhCC
Q 036356 237 YGTALDCSCDLEFLEQGKIVHGFMIKLGL 265 (462)
Q Consensus 237 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 265 (462)
.-.+++.|.+.|.+++|.++.....+...
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~ 137 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQS 137 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHH
Confidence 34678899999999999999888776543
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.52 E-value=61 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=12.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m 160 (462)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455566666666666666664
No 457
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=22.10 E-value=4.4e+02 Score=28.55 Aligned_cols=192 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred hhhhcCCCCCceeehhh---------hccCCChhhHHHHHHhh-------cCCCcchHHHHHHhhc-CccchhhHHHHHH
Q 036356 45 YLFDGLFDRTIVFLDLY---------HLWSRTEWSAFGSFDGL-------LSNEENEYGTALDCSC-DLEFLEQGKIVHG 107 (462)
Q Consensus 45 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~A~~~~~~m-------~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~ 107 (462)
++.-+||+.|..+-.-- +...+++.+|+.+.++- ...|...|-.=+..+. +.++.+---.++.
T Consensus 678 ~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls 757 (928)
T PF04762_consen 678 SVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLS 757 (928)
T ss_pred eEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q ss_pred HHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHH------------HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCch
Q 036356 108 FMIKLGLELESDLLISLTAVCRYQPNVTLRNAMI------------SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 175 (462)
Q Consensus 108 ~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 175 (462)
.+...++ +...|.... ......+++...-..+.+- ... ..-...
T Consensus 758 ~L~~EDv------------------t~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~-----l~~-~~~~~~ 813 (928)
T PF04762_consen 758 SLRNEDV------------------TKTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKA-----LEK-PKDKDK 813 (928)
T ss_pred hcccccc------------------cccccccccccccccccccccCCCccccHHHHHHHHHHHH-----hcc-cccchh
Q ss_pred HHHHHHHHHHhcC--CcccHHHHhhccCCCCcchHHHHHHHHHhCc------hHHHHHHHhhhc--------CCcchHHH
Q 036356 176 VNTVLIDMYAKCG--SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE------WSAFGSFDGLLS--------NEENEYGT 239 (462)
Q Consensus 176 ~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~------~~a~~~~~~m~~--------~~~~~~~~ 239 (462)
-...++.+|++.+ ++++|+....++.+.+...-...++-.+--- +.|+.+|+-=.. .|..-|-.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLP 893 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLP 893 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHH
Q ss_pred HHHhhcCc-------------cchhhhHHHHHHH
Q 036356 240 ALDCSCDL-------------EFLEQGKIVHGFM 260 (462)
Q Consensus 240 ll~~~~~~-------------~~~~~a~~~~~~~ 260 (462)
.|+.+.+. ++++.|++-+..+
T Consensus 894 fL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 894 FLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 458
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=22.10 E-value=8.1e+02 Score=24.60 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=74.2
Q ss_pred CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHH
Q 036356 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWV 377 (462)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 377 (462)
.|++++|+...+... ...+......+-..++..+. ....+.-..+|+...+.++.+-..+-..-.-++....+.+
T Consensus 322 ~~~l~eal~~~e~~c----~~~~~~lpi~~~~~lle~~d-~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~~~~~~~ 396 (547)
T PF14929_consen 322 GGRLKEALNELEKFC----ISSTCALPIRLRAHLLEYFD-QNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQKDYSAEQ 396 (547)
T ss_pred cccHHHHHHHHHHhc----cCCCccchHHHHHHHHHHhC-cccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhhHHHHHH
Confidence 478888877776521 11112222233333333332 3355666677777776666554444444444444566777
Q ss_pred HHHHHHHC-CCCCCHhHHHHHHHHHHh-cCCh-------HHHHHHHHhC----CCCCCHHHHHHHHHHHHcc
Q 036356 378 LFHHIRKH-GIEPRHQHYARVVDLLAR-AGYS-------NHAFKFIMNM----PIELRLSVRRALLSAWKIP 436 (462)
Q Consensus 378 ~~~~m~~~-g~~p~~~~~~~li~~~~~-~g~~-------~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~ 436 (462)
+++.+.-. ...|...+|.-+...+.+ -+++ ..+.+++-.+ +..-+...|..+.+..-+.
T Consensus 397 Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 397 LLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Confidence 77755232 566889999998888888 3333 3344333333 4455667777766555433
No 459
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=6.8e+02 Score=23.71 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCcchHHHHhccCCCCCccchHHH------------HHHHHhcCChHHHHHHHHHHHHCC-CCCC-----H
Q 036356 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM------------TVGYGLHGLGEEGWVLFHHIRKHG-IEPR-----H 391 (462)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~ 391 (462)
.|...+...|++++|..++.+.. +.||.++ ++.|...+|+-.|.-+-++....- -.|| .
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKl 212 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQ---VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKL 212 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHH
Confidence 34556677899999888887654 3344332 456777778877776666655542 2233 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 392 QHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
..|+.++......+.+=.+.+.++..
T Consensus 213 kyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 213 KYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHH
Confidence 45778888877888888887777776
No 460
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.50 E-value=7.9e+02 Score=24.22 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCC
Q 036356 422 RLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKT 456 (462)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 456 (462)
+...+..+++++...+....++..+.+++..|..|
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 34444555555554444445666666666666544
No 461
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.41 E-value=4e+02 Score=22.38 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCcccHHHHhhccCC------CCcchHHHHHH-HHHhCc----hHHHHHHHhhhc---CCcc-------hH
Q 036356 179 VLIDMYAKCGSVDLAPMFFDRTLD------KDVVMRSAMIV-GYGLHE----WSAFGSFDGLLS---NEEN-------EY 237 (462)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~li~-~~~~~~----~~a~~~~~~m~~---~~~~-------~~ 237 (462)
...-.....|++++|..-++++.+ +-...|..+.. +++.++ .+|.-++.-... |+.. .|
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Y 113 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAY 113 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHH
Confidence 333344556677777666665542 23334555544 555555 455555555544 2211 11
Q ss_pred H-HHH----------HhhcCccchhhhHHHHHHHHH
Q 036356 238 G-TAL----------DCSCDLEFLEQGKIVHGFMIK 262 (462)
Q Consensus 238 ~-~ll----------~~~~~~~~~~~a~~~~~~~~~ 262 (462)
- -+. --..+.|+++.|.+.++-|.+
T Consensus 114 ilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 114 ILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 011 112466888888888888865
No 462
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=21.14 E-value=97 Score=24.06 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=24.5
Q ss_pred HcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHH
Q 036356 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335 (462)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 335 (462)
...|.-..|..+|.+ |.+.|-.|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~k-----ML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRK-----MLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHH-----HHhCCCCCc--cHHHHHHHh
Confidence 345667788899999 667898887 677777543
No 463
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=21.06 E-value=4.1e+02 Score=25.55 Aligned_cols=155 Identities=10% Similarity=-0.014 Sum_probs=70.2
Q ss_pred HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHH----HHhccCC-----------CCC
Q 036356 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP----MFFDRTL-----------DKD 355 (462)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~~~~~-----------~~~ 355 (462)
+..-++..|.++.|.+++.+. -|+.--...-..++..|....-.=.+. .+.--+. .|-
T Consensus 124 laadhvAAGsFetAm~LLnrQ-------iGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~ 196 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQ-------IGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPA 196 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHH-------C-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB
T ss_pred cHHHHHHhCCHHHHHHHHHHH-------hCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCc
Confidence 456688999999999999884 344333334444556664332111000 0000000 011
Q ss_pred -ccchHHHHH------HHHhcCChHHHHHHHHHHHHC--CCCCC----HhHHHHHHHHH----------HhcCC-----h
Q 036356 356 -VVMRSAMTV------GYGLHGLGEEGWVLFHHIRKH--GIEPR----HQHYARVVDLL----------ARAGY-----S 407 (462)
Q Consensus 356 -~~~~~~li~------~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~~~~~li~~~----------~~~g~-----~ 407 (462)
...++.|.. -+...|++++|+..|+.+... =+..+ ..-...+|..| ...+. .
T Consensus 197 i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 197 IPLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPV 276 (422)
T ss_dssp ----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 112333322 345678888888888887664 11111 11122222221 11111 2
Q ss_pred HHHHHHHHhC------CCCCCHH--HHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 408 NHAFKFIMNM------PIELRLS--VRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 408 ~~A~~~~~~m------~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
++..+.++-. +++|... +..+-+..+.+.+++..|.....+.++.
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel 329 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLEL 329 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 2222222222 5556443 5567777778888888887665555544
No 464
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=20.90 E-value=2.5e+02 Score=18.29 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=25.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-----HhcCChHHHHHH
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLL-----ARAGYSNHAFKF 413 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~A~~~ 413 (462)
+...|++=+|-++++++-...-.|....|..+|+.. .+.|+...|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345666777777777766532223344555555543 345666666554
No 465
>PRK10941 hypothetical protein; Provisional
Probab=20.75 E-value=6.1e+02 Score=22.63 Aligned_cols=78 Identities=8% Similarity=-0.070 Sum_probs=46.3
Q ss_pred HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhh
Q 036356 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYI 165 (462)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 165 (462)
.+.+-.++.+.++++.|.++.+.+....+ .+..-+.--.-.|.+.|.+..|..=++.. +
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-----------------~dp~e~RDRGll~~qL~c~~~A~~DL~~f----l 242 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-----------------EDPYEIRDRGLIYAQLDCEHVALSDLSYF----V 242 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCcHHHHHHHHHH----H
Confidence 44445566677777777777777777654 44455555555677777777777766665 1
Q ss_pred hhcCCCCCchHHHHHHHHH
Q 036356 166 GKSEYRNNVIVNTVLIDMY 184 (462)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~ 184 (462)
...--.|+.......+...
T Consensus 243 ~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 243 EQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HhCCCchhHHHHHHHHHHH
Confidence 2222344444444444433
No 466
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.56 E-value=2.5e+02 Score=20.81 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=35.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCccc
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 192 (462)
.++..+...+..-.|.++++.+ .+.+...+..|-.-.++.+...|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l-----~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERL-----RKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHH-----HhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4566666667777888899887 667766777766667888888876554
No 467
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.00 E-value=9.1e+02 Score=24.34 Aligned_cols=57 Identities=7% Similarity=-0.004 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHHhcCCcccHHHHhhccCCCC-cchHHHHHHHHHhCc-hHHHHHHHhhhc
Q 036356 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD-VVMRSAMIVGYGLHE-WSAFGSFDGLLS 231 (462)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~-~~a~~~~~~m~~ 231 (462)
....|..|++.+. .=+.+...++++++.. . ...|..++++....| ..|+.+..+...
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~ 367 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIK 367 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556777777554 4456666777777655 3 578899999999999 777777776654
Done!