Query 036356
Match_columns 462
No_of_seqs 392 out of 2531
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 20:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.9E-34 9.8E-39 286.6 22.7 414 8-452 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-31 4.2E-36 267.5 26.1 379 44-453 73-546 (597)
3 4g26_A Pentatricopeptide repea 100.0 6.9E-31 2.4E-35 252.6 17.4 212 100-404 7-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.3E-30 1.1E-34 247.8 18.9 182 234-436 26-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-24 3.8E-29 205.2 29.6 337 64-450 11-366 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.5E-24 1.2E-28 201.8 30.6 327 62-437 43-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 4E-21 1.4E-25 187.7 24.0 344 62-452 16-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4.2E-25 181.1 25.9 301 81-430 24-370 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.4E-20 8.3E-25 179.0 24.3 338 54-441 25-443 (450)
10 2gw1_A Mitochondrial precursor 99.9 5.3E-20 1.8E-24 179.7 23.9 370 13-424 9-483 (514)
11 3fp2_A TPR repeat-containing p 99.8 1.7E-18 5.7E-23 170.1 26.9 346 62-452 35-491 (537)
12 3fp2_A TPR repeat-containing p 99.8 8E-18 2.7E-22 165.2 22.9 366 12-422 27-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.3E-16 4.4E-21 147.9 25.0 303 83-434 3-351 (359)
14 3hym_B Cell division cycle pro 99.8 2.2E-16 7.4E-21 144.6 26.1 287 79-439 18-321 (330)
15 3spa_A Mtrpol, DNA-directed RN 99.8 7.6E-19 2.6E-23 174.1 9.1 111 325-435 127-248 (1134)
16 3ieg_A DNAJ homolog subfamily 99.8 5.9E-17 2E-21 150.1 20.5 294 62-403 13-352 (359)
17 3spa_A Mtrpol, DNA-directed RN 99.8 4.2E-19 1.4E-23 175.9 5.9 150 284-437 126-286 (1134)
18 1b89_A Protein (clathrin heavy 99.7 2.6E-17 8.8E-22 151.5 13.8 284 62-417 13-308 (449)
19 3hym_B Cell division cycle pro 99.7 5E-16 1.7E-20 142.2 21.5 278 62-407 32-321 (330)
20 1fch_A Peroxisomal targeting s 99.7 1.5E-16 5.1E-21 148.3 18.0 293 64-416 37-355 (368)
21 4eqf_A PEX5-related protein; a 99.7 8.6E-17 2.9E-21 149.8 16.0 270 82-416 64-352 (365)
22 1b89_A Protein (clathrin heavy 99.7 1.2E-16 4E-21 147.1 10.6 234 146-436 15-254 (449)
23 4eqf_A PEX5-related protein; a 99.7 2.8E-16 9.6E-21 146.3 13.4 266 136-447 67-351 (365)
24 3cv0_A Peroxisome targeting si 99.7 3.8E-15 1.3E-19 136.1 20.4 272 82-417 20-312 (327)
25 1fch_A Peroxisomal targeting s 99.7 1.9E-15 6.4E-20 140.7 18.1 280 22-380 37-354 (368)
26 2xm6_A Protein corresponding t 99.6 2.9E-13 1E-17 131.2 29.9 343 54-453 38-433 (490)
27 2ooe_A Cleavage stimulation fa 99.6 4.1E-14 1.4E-18 138.6 24.2 381 9-450 12-490 (530)
28 3mkr_A Coatomer subunit epsilo 99.6 3.9E-14 1.3E-18 127.0 18.3 241 141-417 6-261 (291)
29 3cv0_A Peroxisome targeting si 99.6 2E-14 7E-19 131.2 16.7 209 62-310 31-265 (327)
30 2xm6_A Protein corresponding t 99.6 5E-13 1.7E-17 129.6 26.7 325 23-417 56-429 (490)
31 1xi4_A Clathrin heavy chain; a 99.6 1.4E-12 4.7E-17 133.9 29.3 322 53-436 985-1327(1630)
32 2ooe_A Cleavage stimulation fa 99.6 2.1E-12 7.2E-17 126.5 27.3 353 54-453 12-455 (530)
33 3mkr_A Coatomer subunit epsilo 99.5 5.7E-13 1.9E-17 119.5 20.7 241 182-450 7-262 (291)
34 1xi4_A Clathrin heavy chain; a 99.5 2.1E-12 7.1E-17 132.7 27.0 358 12-447 987-1379(1630)
35 4g1t_A Interferon-induced prot 99.5 1.7E-12 5.9E-17 125.1 23.5 340 81-453 49-460 (472)
36 4g1t_A Interferon-induced prot 99.5 9.5E-13 3.2E-17 126.9 17.8 361 10-426 51-469 (472)
37 3sf4_A G-protein-signaling mod 99.4 1.1E-12 3.8E-17 123.5 12.8 307 83-441 9-365 (406)
38 3uq3_A Heat shock protein STI1 99.4 4.8E-12 1.6E-16 111.1 15.8 221 135-417 6-233 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.1E-12 1.1E-16 113.6 14.3 249 92-414 14-269 (275)
40 3e4b_A ALGK; tetratricopeptide 99.4 5.7E-11 2E-15 113.5 23.7 366 14-448 7-417 (452)
41 2ho1_A Type 4 fimbrial biogene 99.4 5.8E-11 2E-15 103.9 20.5 194 234-452 37-238 (252)
42 2ho1_A Type 4 fimbrial biogene 99.4 2.7E-11 9.3E-16 106.0 18.1 204 174-427 37-246 (252)
43 3ro2_A PINS homolog, G-protein 99.4 6.6E-12 2.3E-16 114.6 14.7 282 85-417 7-329 (338)
44 2pl2_A Hypothetical conserved 99.4 1.3E-11 4.3E-16 105.6 15.3 191 233-448 4-210 (217)
45 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.5E-12 1.2E-16 113.2 12.2 245 143-446 14-269 (275)
46 4a1s_A PINS, partner of inscut 99.4 4.7E-12 1.6E-16 119.6 13.8 282 85-417 50-369 (411)
47 4a1s_A PINS, partner of inscut 99.4 7.1E-12 2.4E-16 118.4 14.7 274 136-450 50-370 (411)
48 3sf4_A G-protein-signaling mod 99.4 1.1E-11 3.8E-16 116.6 15.6 279 132-450 7-334 (406)
49 3ro2_A PINS homolog, G-protein 99.4 1.2E-11 4E-16 112.9 15.0 276 136-452 7-332 (338)
50 2pl2_A Hypothetical conserved 99.3 9.6E-12 3.3E-16 106.4 12.9 195 131-381 2-210 (217)
51 3u4t_A TPR repeat-containing p 99.3 8.8E-11 3E-15 104.0 19.6 188 85-311 5-205 (272)
52 3uq3_A Heat shock protein STI1 99.3 2.7E-11 9.2E-16 106.2 16.0 221 175-452 6-236 (258)
53 2vq2_A PILW, putative fimbrial 99.3 4.8E-11 1.7E-15 102.2 17.2 158 236-417 44-208 (225)
54 2q7f_A YRRB protein; TPR, prot 99.3 2.7E-11 9.3E-16 105.3 15.5 193 234-451 23-221 (243)
55 3u4t_A TPR repeat-containing p 99.3 3.1E-10 1.1E-14 100.4 21.4 196 235-452 38-250 (272)
56 2vq2_A PILW, putative fimbrial 99.3 1.7E-10 6E-15 98.7 18.0 192 234-450 8-209 (225)
57 2h6f_A Protein farnesyltransfe 99.3 1.6E-10 5.3E-15 107.3 18.0 245 83-402 97-364 (382)
58 1ouv_A Conserved hypothetical 99.3 1.1E-09 3.7E-14 97.1 21.8 223 173-451 5-250 (273)
59 2q7f_A YRRB protein; TPR, prot 99.3 9.4E-11 3.2E-15 101.8 14.5 94 84-200 24-117 (243)
60 1ouv_A Conserved hypothetical 99.3 4.3E-10 1.5E-14 99.8 18.7 219 132-417 4-248 (273)
61 2h6f_A Protein farnesyltransfe 99.2 4.5E-10 1.5E-14 104.2 18.6 243 135-435 98-365 (382)
62 3ulq_A Response regulator aspa 99.2 3E-10 1E-14 106.2 17.4 295 144-452 22-368 (383)
63 3e4b_A ALGK; tetratricopeptide 99.2 1.7E-09 5.7E-14 103.3 22.0 310 89-453 9-352 (452)
64 4abn_A Tetratricopeptide repea 99.2 1.6E-10 5.4E-15 111.2 14.7 201 220-446 85-315 (474)
65 3vtx_A MAMA; tetratricopeptide 99.2 4.9E-10 1.7E-14 92.8 14.9 166 233-423 4-174 (184)
66 3nf1_A KLC 1, kinesin light ch 99.2 9.8E-11 3.4E-15 105.7 9.7 186 133-352 26-222 (311)
67 3ulq_A Response regulator aspa 99.2 8.2E-10 2.8E-14 103.2 16.2 223 62-312 22-291 (383)
68 2ond_A Cleavage stimulation fa 99.1 2.8E-09 9.7E-14 96.3 19.2 206 221-452 34-270 (308)
69 3q15_A PSP28, response regulat 99.1 2.7E-09 9.4E-14 99.4 19.1 305 132-450 8-363 (378)
70 3vtx_A MAMA; tetratricopeptide 99.1 2.1E-09 7.3E-14 88.9 16.2 162 283-452 3-170 (184)
71 1hz4_A MALT regulatory protein 99.1 1.3E-08 4.5E-13 94.5 23.0 298 88-439 19-352 (373)
72 3nf1_A KLC 1, kinesin light ch 99.1 4.3E-10 1.5E-14 101.5 11.9 208 235-451 28-306 (311)
73 4abn_A Tetratricopeptide repea 99.1 8.4E-10 2.9E-14 106.1 13.8 203 67-310 83-317 (474)
74 2ond_A Cleavage stimulation fa 99.1 3.7E-09 1.3E-13 95.5 17.3 206 69-312 33-268 (308)
75 3as5_A MAMA; tetratricopeptide 99.0 8.3E-09 2.8E-13 85.0 14.7 160 285-452 8-173 (186)
76 1hz4_A MALT regulatory protein 99.0 4.6E-08 1.6E-12 90.8 20.8 271 139-450 19-320 (373)
77 3as5_A MAMA; tetratricopeptide 99.0 8E-09 2.7E-13 85.1 12.6 157 236-417 10-170 (186)
78 4gyw_A UDP-N-acetylglucosamine 99.0 4.6E-09 1.6E-13 105.3 12.9 158 284-450 8-172 (723)
79 4e6h_A MRNA 3'-END-processing 99.0 3.2E-07 1.1E-11 91.0 25.8 391 26-451 48-569 (679)
80 4gyw_A UDP-N-acetylglucosamine 98.9 6.5E-09 2.2E-13 104.2 13.4 158 234-417 9-171 (723)
81 4i17_A Hypothetical protein; T 98.9 2.6E-08 8.8E-13 85.5 15.1 150 283-439 5-169 (228)
82 1qqe_A Vesicular transport pro 98.9 7E-08 2.4E-12 86.3 18.2 217 149-423 32-273 (292)
83 3edt_B KLC 2, kinesin light ch 98.9 5.6E-09 1.9E-13 92.5 10.7 195 245-451 12-280 (283)
84 3q15_A PSP28, response regulat 98.9 6.9E-09 2.4E-13 96.7 11.4 302 62-417 22-362 (378)
85 1qqe_A Vesicular transport pro 98.9 4.3E-08 1.5E-12 87.7 14.5 194 241-449 44-266 (292)
86 4i17_A Hypothetical protein; T 98.9 5E-08 1.7E-12 83.7 14.3 149 234-407 7-169 (228)
87 3edt_B KLC 2, kinesin light ch 98.8 1.5E-08 5.1E-13 89.7 10.7 172 234-417 43-278 (283)
88 4e6h_A MRNA 3'-END-processing 98.8 3.3E-06 1.1E-10 83.8 27.3 357 67-453 47-534 (679)
89 2fo7_A Synthetic consensus TPR 98.7 1.1E-07 3.7E-12 73.5 11.8 90 359-450 38-130 (136)
90 2fo7_A Synthetic consensus TPR 98.7 1.6E-07 5.5E-12 72.5 11.6 122 288-417 4-129 (136)
91 3qky_A Outer membrane assembly 98.6 2.7E-07 9.1E-12 81.0 11.4 167 235-423 16-228 (261)
92 2r5s_A Uncharacterized protein 98.6 7.2E-07 2.5E-11 73.0 12.6 155 287-451 8-172 (176)
93 2pzi_A Probable serine/threoni 98.6 1E-06 3.4E-11 88.6 15.9 168 245-438 402-583 (681)
94 3mv2_B Coatomer subunit epsilo 98.6 1.3E-06 4.5E-11 77.0 14.2 44 141-192 20-63 (310)
95 3mv2_B Coatomer subunit epsilo 98.5 2.9E-06 9.8E-11 74.9 15.7 128 283-417 98-237 (310)
96 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.6E-06 5.4E-11 73.2 13.7 123 286-417 7-147 (213)
97 3qou_A Protein YBBN; thioredox 98.5 2.2E-06 7.5E-11 76.3 15.1 159 283-450 115-282 (287)
98 2ifu_A Gamma-SNAP; membrane fu 98.5 2.2E-06 7.4E-11 77.1 15.1 212 95-352 3-222 (307)
99 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.9E-06 9.8E-11 71.6 14.9 124 327-452 8-150 (213)
100 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.1E-06 7.2E-11 73.3 14.1 181 236-451 6-212 (225)
101 2r5s_A Uncharacterized protein 98.5 6.9E-07 2.4E-11 73.1 10.5 155 236-416 8-169 (176)
102 3urz_A Uncharacterized protein 98.5 8E-07 2.7E-11 74.9 11.1 167 240-431 10-198 (208)
103 3qou_A Protein YBBN; thioredox 98.5 1.8E-06 6.1E-11 76.8 13.9 158 233-416 116-280 (287)
104 2pzi_A Probable serine/threoni 98.5 2.1E-06 7.2E-11 86.3 15.9 177 220-423 408-609 (681)
105 3u3w_A Transcriptional activat 98.5 5.7E-06 2E-10 73.8 17.1 158 289-450 79-264 (293)
106 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.7E-06 9.1E-11 72.7 14.2 144 287-452 6-176 (225)
107 4ga2_A E3 SUMO-protein ligase 98.5 1.4E-07 4.8E-12 75.0 5.7 137 293-438 5-149 (150)
108 3rjv_A Putative SEL1 repeat pr 98.5 4.8E-06 1.6E-10 70.4 15.2 176 251-454 3-199 (212)
109 3urz_A Uncharacterized protein 98.5 1.7E-06 5.7E-11 72.9 12.1 154 289-451 8-185 (208)
110 3qky_A Outer membrane assembly 98.5 1.9E-06 6.5E-11 75.5 12.6 163 283-452 13-224 (261)
111 2qfc_A PLCR protein; TPR, HTH, 98.4 1.3E-06 4.3E-11 78.1 11.5 160 286-449 76-263 (293)
112 3rjv_A Putative SEL1 repeat pr 98.4 5.9E-06 2E-10 69.8 14.8 167 221-417 4-194 (212)
113 2ifu_A Gamma-SNAP; membrane fu 98.4 1.5E-06 5.1E-11 78.2 10.9 158 291-450 42-222 (307)
114 2uy1_A Cleavage stimulation fa 98.4 0.00014 4.9E-09 69.7 24.8 163 283-450 211-411 (493)
115 2vsy_A XCC0866; transferase, g 98.4 2.1E-06 7.2E-11 84.5 11.9 144 299-451 3-156 (568)
116 4ga2_A E3 SUMO-protein ligase 98.4 1E-06 3.5E-11 69.9 7.7 133 62-218 7-147 (150)
117 2vsy_A XCC0866; transferase, g 98.4 3.1E-06 1.1E-10 83.3 12.8 145 247-417 2-154 (568)
118 2qfc_A PLCR protein; TPR, HTH, 98.3 5.5E-06 1.9E-10 73.9 12.1 169 236-417 77-263 (293)
119 3gyz_A Chaperone protein IPGC; 98.3 2E-06 6.9E-11 68.1 7.6 97 325-423 36-137 (151)
120 4gco_A Protein STI-1; structur 98.2 4.1E-06 1.4E-10 64.1 8.5 88 328-417 16-107 (126)
121 3u3w_A Transcriptional activat 98.2 4.1E-05 1.4E-09 68.2 16.4 155 213-383 83-264 (293)
122 3gyz_A Chaperone protein IPGC; 98.2 5.3E-06 1.8E-10 65.6 9.3 122 326-453 10-134 (151)
123 3gw4_A Uncharacterized protein 98.2 6.6E-06 2.2E-10 68.6 10.0 155 245-417 3-173 (203)
124 1na0_A Designed protein CTPR3; 98.2 9.8E-06 3.4E-10 61.2 9.7 94 285-384 9-105 (125)
125 1a17_A Serine/threonine protei 98.2 1.1E-05 3.8E-10 64.7 10.5 114 332-447 20-141 (166)
126 2lni_A Stress-induced-phosphop 98.2 9.2E-06 3.2E-10 62.3 9.4 112 324-437 15-132 (133)
127 2e2e_A Formate-dependent nitri 98.2 1.5E-05 5.3E-10 64.9 10.8 122 244-390 20-147 (177)
128 3dra_A Protein farnesyltransfe 98.2 0.00055 1.9E-08 60.8 21.5 206 220-450 50-285 (306)
129 2uy1_A Cleavage stimulation fa 98.1 9.9E-05 3.4E-09 70.8 17.6 336 23-417 7-410 (493)
130 1na0_A Designed protein CTPR3; 98.1 2.4E-05 8.1E-10 59.0 10.9 110 325-436 9-124 (125)
131 3gw4_A Uncharacterized protein 98.1 4.8E-06 1.6E-10 69.5 7.5 149 296-450 3-174 (203)
132 2vyi_A SGTA protein; chaperone 98.1 1.3E-05 4.5E-10 61.1 9.4 79 358-438 48-129 (131)
133 2e2e_A Formate-dependent nitri 98.1 8.1E-06 2.8E-10 66.6 8.4 117 62-201 20-142 (177)
134 1a17_A Serine/threonine protei 98.1 2.9E-05 1E-09 62.1 11.4 125 285-417 13-143 (166)
135 3dra_A Protein farnesyltransfe 98.1 0.0003 1E-08 62.5 18.3 216 97-384 47-286 (306)
136 2c2l_A CHIP, carboxy terminus 98.1 6.4E-06 2.2E-10 73.0 7.4 187 82-310 3-195 (281)
137 2kck_A TPR repeat; tetratricop 98.1 6.1E-05 2.1E-09 55.5 11.9 97 355-453 5-107 (112)
138 2fbn_A 70 kDa peptidylprolyl i 98.1 2.1E-06 7.2E-11 71.6 3.8 157 294-458 13-192 (198)
139 4f3v_A ESX-1 secretion system 98.1 3.6E-05 1.2E-09 67.0 11.6 182 246-452 18-237 (282)
140 2vgx_A Chaperone SYCD; alterna 98.0 2.5E-05 8.5E-10 61.6 9.6 90 326-417 22-115 (148)
141 2lni_A Stress-induced-phosphop 98.0 2.4E-05 8.1E-10 60.0 9.2 104 62-188 26-132 (133)
142 1p5q_A FKBP52, FK506-binding p 98.0 2.1E-05 7.1E-10 71.6 10.2 127 284-417 146-291 (336)
143 1p5q_A FKBP52, FK506-binding p 98.0 2.5E-05 8.7E-10 71.1 10.5 139 298-445 126-286 (336)
144 4gco_A Protein STI-1; structur 98.0 5.6E-05 1.9E-09 57.6 10.9 93 358-452 15-110 (126)
145 2c2l_A CHIP, carboxy terminus 98.0 5.8E-05 2E-09 66.7 12.5 187 234-450 4-197 (281)
146 2vgx_A Chaperone SYCD; alterna 98.0 2.6E-05 8.9E-10 61.5 8.8 82 62-160 31-115 (148)
147 3upv_A Heat shock protein STI1 98.0 2.2E-05 7.7E-10 59.8 8.2 86 330-417 9-98 (126)
148 2vyi_A SGTA protein; chaperone 98.0 3.9E-05 1.3E-09 58.4 9.4 106 62-190 22-130 (131)
149 3sz7_A HSC70 cochaperone (SGT) 98.0 3.3E-05 1.1E-09 62.0 9.3 91 325-417 11-105 (164)
150 1elw_A TPR1-domain of HOP; HOP 98.0 5.3E-05 1.8E-09 56.4 9.8 88 328-417 7-98 (118)
151 4gcn_A Protein STI-1; structur 98.0 1.6E-05 5.5E-10 60.8 6.9 59 286-351 9-68 (127)
152 3ro3_A PINS homolog, G-protein 98.0 5.8E-05 2E-09 59.9 10.5 132 285-416 9-154 (164)
153 4gcn_A Protein STI-1; structur 98.0 1.6E-05 5.6E-10 60.8 6.7 99 326-426 9-119 (127)
154 1elr_A TPR2A-domain of HOP; HO 98.0 1.3E-05 4.3E-10 61.2 6.1 61 285-351 4-64 (131)
155 3q49_B STIP1 homology and U bo 97.9 6.2E-05 2.1E-09 58.1 9.9 91 325-417 9-103 (137)
156 2xcb_A PCRH, regulatory protei 97.9 4.6E-05 1.6E-09 59.5 8.9 89 327-417 20-112 (142)
157 4b4t_Q 26S proteasome regulato 97.9 4.5E-05 1.5E-09 72.0 10.5 205 242-451 12-244 (434)
158 2kck_A TPR repeat; tetratricop 97.9 3.4E-05 1.2E-09 56.9 7.6 96 83-201 6-104 (112)
159 2fbn_A 70 kDa peptidylprolyl i 97.9 1.3E-05 4.6E-10 66.7 5.3 153 14-200 8-183 (198)
160 4f3v_A ESX-1 secretion system 97.9 0.00015 5.2E-09 63.1 11.8 136 288-430 105-248 (282)
161 3q7a_A Farnesyltransferase alp 97.8 0.011 3.7E-07 53.2 24.0 176 94-341 65-258 (349)
162 3upv_A Heat shock protein STI1 97.8 0.00019 6.5E-09 54.5 10.9 93 358-452 6-101 (126)
163 4b4t_Q 26S proteasome regulato 97.8 0.0011 3.8E-08 62.3 18.6 205 141-384 11-244 (434)
164 2dba_A Smooth muscle cell asso 97.8 0.0001 3.6E-09 57.5 9.2 59 357-417 66-125 (148)
165 1elr_A TPR2A-domain of HOP; HO 97.8 8.2E-05 2.8E-09 56.6 8.3 111 325-435 4-124 (131)
166 3ro3_A PINS homolog, G-protein 97.8 4.3E-05 1.5E-09 60.6 6.7 127 325-451 9-157 (164)
167 3q49_B STIP1 homology and U bo 97.8 0.00023 7.9E-09 54.8 10.6 97 354-452 7-106 (137)
168 2xcb_A PCRH, regulatory protei 97.8 0.00022 7.7E-09 55.5 10.6 104 347-452 6-115 (142)
169 1hxi_A PEX5, peroxisome target 97.8 4.7E-05 1.6E-09 57.6 6.2 90 359-450 20-112 (121)
170 2dba_A Smooth muscle cell asso 97.7 0.00032 1.1E-08 54.6 11.3 101 283-392 26-133 (148)
171 3sz7_A HSC70 cochaperone (SGT) 97.7 0.00025 8.6E-09 56.7 10.8 95 356-452 11-108 (164)
172 1hxi_A PEX5, peroxisome target 97.7 0.00019 6.7E-09 54.1 9.5 94 327-422 19-117 (121)
173 1elw_A TPR1-domain of HOP; HOP 97.7 0.00022 7.7E-09 52.8 9.6 94 357-452 5-101 (118)
174 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00012 4.3E-09 69.6 9.7 122 284-411 267-405 (457)
175 2xev_A YBGF; tetratricopeptide 97.7 0.00028 9.5E-09 53.6 9.9 92 330-423 7-109 (129)
176 3q7a_A Farnesyltransferase alp 97.7 0.0055 1.9E-07 55.2 18.9 205 220-449 71-328 (349)
177 2xev_A YBGF; tetratricopeptide 97.6 0.00025 8.6E-09 53.9 8.9 96 288-391 5-109 (129)
178 1wao_1 Serine/threonine protei 97.6 8.1E-05 2.8E-09 71.2 6.9 114 62-198 16-134 (477)
179 3k9i_A BH0479 protein; putativ 97.6 0.00013 4.5E-09 54.6 6.6 78 338-417 3-87 (117)
180 3k9i_A BH0479 protein; putativ 97.6 5.4E-05 1.8E-09 56.8 4.4 80 64-160 2-87 (117)
181 3n71_A Histone lysine methyltr 97.6 0.00057 2E-08 65.1 12.2 123 293-417 317-461 (490)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00036 1.2E-08 66.4 10.8 144 297-448 246-410 (457)
183 2l6j_A TPR repeat-containing p 97.5 0.00023 7.9E-09 52.3 7.0 97 82-202 3-106 (111)
184 3rkv_A Putative peptidylprolyl 97.5 0.00018 6.2E-09 57.4 6.5 119 284-424 10-131 (162)
185 2hr2_A Hypothetical protein; a 97.4 0.00032 1.1E-08 55.1 7.0 58 358-417 59-128 (159)
186 1wao_1 Serine/threonine protei 97.4 0.00017 5.9E-09 69.0 6.3 117 292-417 13-136 (477)
187 1ihg_A Cyclophilin 40; ppiase 97.4 0.00038 1.3E-08 64.1 8.3 136 285-443 223-361 (370)
188 1ihg_A Cyclophilin 40; ppiase 97.4 0.00057 2E-08 62.9 9.0 87 324-412 272-362 (370)
189 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00019 6.4E-09 65.3 5.5 145 285-451 179-327 (338)
190 2hr2_A Hypothetical protein; a 97.4 0.0012 4E-08 51.9 9.2 90 359-450 14-129 (159)
191 2l6j_A TPR repeat-containing p 97.3 0.00087 3E-08 49.1 7.8 95 234-352 4-105 (111)
192 3rkv_A Putative peptidylprolyl 97.3 0.0013 4.6E-08 52.3 9.4 67 324-392 62-131 (162)
193 3n71_A Histone lysine methyltr 97.3 0.0021 7.2E-08 61.2 12.1 132 243-385 318-464 (490)
194 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00068 2.3E-08 61.6 7.6 82 62-160 189-290 (338)
195 3dss_A Geranylgeranyl transfer 97.1 0.036 1.2E-06 49.6 17.0 174 250-449 90-301 (331)
196 3ma5_A Tetratricopeptide repea 97.0 0.0012 4.2E-08 47.6 6.2 61 355-417 6-67 (100)
197 2kat_A Uncharacterized protein 97.0 0.0011 3.8E-08 49.2 5.9 73 343-417 3-79 (115)
198 2kat_A Uncharacterized protein 96.9 0.0018 6.2E-08 47.9 6.5 74 70-160 3-79 (115)
199 1na3_A Designed protein CTPR2; 96.9 0.0056 1.9E-07 42.7 8.6 75 358-434 11-88 (91)
200 3ma5_A Tetratricopeptide repea 96.9 0.0026 8.7E-08 45.9 6.5 62 82-160 6-67 (100)
201 3qww_A SET and MYND domain-con 96.6 0.0076 2.6E-07 56.4 9.3 81 369-449 311-408 (433)
202 1na3_A Designed protein CTPR2; 96.6 0.0058 2E-07 42.6 6.7 60 84-160 10-69 (91)
203 3qwp_A SET and MYND domain-con 96.6 0.012 4.2E-07 55.0 10.4 86 332-417 294-397 (429)
204 1zu2_A Mitochondrial import re 96.5 0.00088 3E-08 52.5 1.8 61 372-434 62-135 (158)
205 1klx_A Cysteine rich protein B 96.5 0.013 4.6E-07 45.0 8.6 111 247-386 8-127 (138)
206 1dce_A Protein (RAB geranylger 96.4 0.059 2E-06 52.4 14.6 165 220-409 46-244 (567)
207 3qww_A SET and MYND domain-con 96.4 0.014 4.9E-07 54.5 9.7 52 297-350 310-365 (433)
208 3dss_A Geranylgeranyl transfer 96.3 0.13 4.6E-06 45.8 15.0 180 62-264 39-268 (331)
209 1zu2_A Mitochondrial import re 96.2 0.0034 1.2E-07 49.1 3.6 98 63-184 13-134 (158)
210 1dce_A Protein (RAB geranylger 96.2 0.037 1.3E-06 53.9 11.7 168 247-439 42-242 (567)
211 1klx_A Cysteine rich protein B 96.1 0.0078 2.7E-07 46.3 5.3 106 299-417 9-123 (138)
212 3qwp_A SET and MYND domain-con 96.0 0.039 1.3E-06 51.6 10.5 92 291-384 293-399 (429)
213 3lvg_A Clathrin heavy chain 1; 95.9 0.34 1.2E-05 45.1 15.6 195 57-253 56-323 (624)
214 2kc7_A BFR218_protein; tetratr 95.9 0.014 4.7E-07 41.6 5.4 54 362-417 6-61 (99)
215 3lvg_A Clathrin heavy chain 1; 95.8 0.00033 1.1E-08 64.5 -4.3 140 206-377 55-220 (624)
216 3mkq_A Coatomer beta'-subunit; 95.8 0.13 4.3E-06 52.6 14.1 101 295-417 662-762 (814)
217 3ly7_A Transcriptional activat 95.5 0.069 2.4E-06 48.1 9.4 139 282-429 191-349 (372)
218 3mkq_B Coatomer subunit alpha; 95.4 0.73 2.5E-05 36.6 14.1 128 293-448 13-140 (177)
219 3bee_A Putative YFRE protein; 95.2 0.067 2.3E-06 37.7 6.8 58 358-417 8-69 (93)
220 3ly7_A Transcriptional activat 94.8 0.52 1.8E-05 42.5 12.9 73 322-396 274-348 (372)
221 2kc7_A BFR218_protein; tetratr 94.3 0.053 1.8E-06 38.3 4.6 54 90-160 7-61 (99)
222 2v5f_A Prolyl 4-hydroxylase su 93.5 0.17 5.8E-06 36.4 6.0 64 360-423 9-79 (104)
223 3bee_A Putative YFRE protein; 93.4 0.24 8.2E-06 34.7 6.5 63 81-160 4-69 (93)
224 3mkq_A Coatomer beta'-subunit; 93.3 0.9 3.1E-05 46.2 13.2 133 288-445 632-771 (814)
225 1pc2_A Mitochondria fission pr 92.4 0.058 2E-06 41.7 2.1 85 95-202 10-99 (152)
226 1wy6_A Hypothetical protein ST 91.6 0.93 3.2E-05 33.9 7.6 144 136-321 7-156 (172)
227 1pc2_A Mitochondria fission pr 91.4 0.56 1.9E-05 36.2 6.6 66 323-390 30-103 (152)
228 2v5f_A Prolyl 4-hydroxylase su 91.1 0.37 1.3E-05 34.5 5.3 70 81-160 3-72 (104)
229 3u64_A Protein TP_0956; tetrat 90.4 0.89 3E-05 39.3 7.6 73 343-417 181-266 (301)
230 2ff4_A Probable regulatory pro 90.2 0.59 2E-05 42.9 7.0 73 89-178 177-249 (388)
231 3u64_A Protein TP_0956; tetrat 89.8 1.5 5.1E-05 37.9 8.5 94 68-182 179-285 (301)
232 3mkq_B Coatomer subunit alpha; 89.7 2.5 8.4E-05 33.5 9.1 74 333-417 13-86 (177)
233 4gns_B Protein CSD3, chitin bi 88.6 1.5 5.2E-05 43.7 8.9 124 288-418 251-398 (754)
234 3ltm_A Alpha-REP4; protein eng 87.9 9.7 0.00033 30.9 15.7 121 132-262 62-184 (211)
235 1wy6_A Hypothetical protein ST 87.8 6 0.00021 29.7 9.3 64 391-454 91-156 (172)
236 4h7y_A Dual specificity protei 87.6 2.1 7.3E-05 32.7 7.1 109 324-433 12-138 (161)
237 2ff4_A Probable regulatory pro 87.5 2.4 8.1E-05 38.9 9.0 75 238-329 175-249 (388)
238 2wpv_A GET4, UPF0363 protein Y 85.8 12 0.00041 32.8 12.0 132 121-262 79-216 (312)
239 4b4t_P 26S proteasome regulato 84.8 9.2 0.00032 35.7 11.7 258 148-417 30-321 (445)
240 4gns_B Protein CSD3, chitin bi 84.3 5.3 0.00018 39.9 10.1 129 237-383 251-398 (754)
241 4fhn_B Nucleoporin NUP120; pro 84.3 36 0.0012 36.1 17.2 145 288-442 815-990 (1139)
242 4fhn_B Nucleoporin NUP120; pro 84.1 44 0.0015 35.5 17.7 122 288-413 902-1042(1139)
243 1nzn_A CGI-135 protein, fissio 83.6 1.4 4.9E-05 32.6 4.4 83 97-202 15-102 (126)
244 1v54_E Cytochrome C oxidase po 83.4 4.7 0.00016 28.3 6.5 46 131-182 42-87 (109)
245 3lpz_A GET4 (YOR164C homolog); 80.7 30 0.001 30.6 16.6 164 176-384 37-215 (336)
246 3lpz_A GET4 (YOR164C homolog); 80.6 30 0.001 30.6 13.9 130 121-262 81-215 (336)
247 1v54_E Cytochrome C oxidase po 80.5 5.3 0.00018 28.1 5.9 60 372-431 26-87 (109)
248 3ltj_A Alpharep-4; protein eng 80.2 21 0.00071 28.5 15.7 121 132-262 57-179 (201)
249 3ltm_A Alpha-REP4; protein eng 80.2 22 0.00074 28.7 16.2 60 323-383 124-183 (211)
250 4b4t_R RPN7, 26S proteasome re 79.8 4.7 0.00016 37.5 7.6 58 327-384 133-196 (429)
251 1nzn_A CGI-135 protein, fissio 79.3 13 0.00044 27.5 8.2 68 354-422 33-106 (126)
252 4b4t_P 26S proteasome regulato 78.5 43 0.0015 31.1 17.0 187 248-450 30-245 (445)
253 1wdy_A 2-5A-dependent ribonucl 77.4 31 0.0011 29.0 12.6 122 332-459 152-282 (285)
254 4ady_A RPN2, 26S proteasome re 75.8 28 0.00096 35.7 12.1 22 181-202 381-402 (963)
255 4h7y_A Dual specificity protei 75.1 26 0.00088 26.9 11.3 110 283-399 11-136 (161)
256 2y69_E Cytochrome C oxidase su 74.8 8.7 0.0003 28.6 6.0 60 101-182 71-130 (152)
257 3ffl_A Anaphase-promoting comp 74.7 20 0.00069 27.9 8.5 120 319-448 12-147 (167)
258 3ffl_A Anaphase-promoting comp 73.4 11 0.00039 29.3 6.8 121 281-418 14-149 (167)
259 3o48_A Mitochondria fission 1 72.9 9.7 0.00033 28.4 6.0 49 373-423 60-111 (134)
260 3ltj_A Alpharep-4; protein eng 72.9 34 0.0012 27.2 15.8 60 323-383 119-178 (201)
261 2wpv_A GET4, UPF0363 protein Y 71.4 52 0.0018 28.8 13.1 46 390-436 133-178 (312)
262 1zbp_A Hypothetical protein VP 71.2 9.6 0.00033 32.4 6.4 109 334-450 6-127 (273)
263 2qx5_A Nucleoporin NIC96; mRNA 69.9 87 0.003 30.7 17.4 90 334-423 452-570 (661)
264 3esl_A Checkpoint serine/threo 68.8 36 0.0012 27.5 9.0 56 248-323 93-148 (202)
265 2y69_E Cytochrome C oxidase su 67.8 17 0.0006 27.1 6.3 59 374-432 71-131 (152)
266 2uwj_G Type III export protein 67.4 29 0.001 24.3 7.2 53 333-387 47-99 (115)
267 1y8m_A FIS1; mitochondria, unk 66.7 16 0.00054 27.6 6.1 21 397-417 83-103 (144)
268 2p58_C Putative type III secre 66.5 31 0.0011 24.2 7.4 52 333-386 48-99 (116)
269 3eiq_C Programmed cell death p 64.2 15 0.00052 32.9 6.7 62 328-389 220-286 (358)
270 3o48_A Mitochondria fission 1 63.8 35 0.0012 25.4 7.4 84 303-391 21-111 (134)
271 1oyz_A Hypothetical protein YI 63.0 69 0.0024 27.0 18.1 124 322-452 139-263 (280)
272 1n11_A Ankyrin; clathrin, BAND 62.8 73 0.0025 29.1 11.6 326 17-416 18-366 (437)
273 3esl_A Checkpoint serine/threo 62.4 31 0.0011 27.8 7.5 74 79-173 73-149 (202)
274 1ug3_A EIF4GI, eukaryotic prot 61.8 12 0.0004 33.4 5.6 97 137-243 14-113 (339)
275 3txn_A 26S proteasome regulato 60.2 65 0.0022 29.3 10.2 88 330-417 104-207 (394)
276 3kea_A K1L; tropism, ANK repea 57.2 80 0.0027 26.8 10.2 58 332-393 165-225 (285)
277 3txn_A 26S proteasome regulato 56.9 1.1E+02 0.0039 27.6 17.7 231 177-424 22-290 (394)
278 4a1g_A Mitotic checkpoint seri 55.5 54 0.0018 25.1 7.5 54 100-173 82-135 (152)
279 1k1a_A B-cell lymphoma 3-encod 54.9 73 0.0025 25.9 9.3 184 241-458 13-211 (241)
280 4a1g_A Mitotic checkpoint seri 54.6 70 0.0024 24.5 9.0 54 251-324 82-135 (152)
281 2nsz_A Programmed cell death p 54.0 15 0.00051 27.3 4.1 73 137-215 10-84 (129)
282 1y8m_A FIS1; mitochondria, unk 53.3 70 0.0024 24.1 8.2 77 321-399 35-121 (144)
283 2uwj_G Type III export protein 52.8 57 0.0019 22.9 8.3 78 371-453 21-98 (115)
284 4b4t_R RPN7, 26S proteasome re 51.9 45 0.0015 30.7 8.0 106 286-394 132-246 (429)
285 4aez_C MAD3, mitotic spindle c 50.2 1E+02 0.0034 25.4 8.7 54 251-324 131-184 (223)
286 2wvi_A Mitotic checkpoint seri 49.9 88 0.003 24.3 7.9 54 251-324 77-130 (164)
287 3b7b_A Euchromatic histone-lys 49.2 1E+02 0.0035 24.9 9.4 51 141-200 15-67 (237)
288 1zbp_A Hypothetical protein VP 47.9 55 0.0019 27.8 7.0 118 242-385 5-129 (273)
289 2ion_A PDCD4, programmed cell 47.1 12 0.00042 28.7 2.8 73 137-215 12-86 (152)
290 1qsa_A Protein (soluble lytic 45.7 2.2E+02 0.0076 27.7 25.4 93 363-458 388-485 (618)
291 1n11_A Ankyrin; clathrin, BAND 45.4 1.8E+02 0.006 26.4 14.2 114 335-458 252-372 (437)
292 1wgl_A TOLL-interacting protei 44.8 30 0.001 21.5 3.7 48 408-458 10-58 (59)
293 2zu6_B Programmed cell death p 44.3 1.1E+02 0.0037 26.7 8.6 62 328-389 169-235 (307)
294 1wdy_A 2-5A-dependent ribonucl 44.1 83 0.0028 26.2 8.1 15 402-416 156-170 (285)
295 2d2s_A Exocyst complex compone 43.5 86 0.0029 26.0 7.6 84 331-417 24-117 (235)
296 2wvi_A Mitotic checkpoint seri 42.2 84 0.0029 24.4 6.8 56 100-175 77-132 (164)
297 2p58_C Putative type III secre 39.4 98 0.0033 21.7 9.8 78 371-453 22-99 (116)
298 3eu9_A Huntingtin-interacting 38.8 1.5E+02 0.0051 23.7 10.2 50 143-201 15-66 (240)
299 3hra_A Ankyrin repeat family p 38.2 1.4E+02 0.0047 23.2 8.2 58 334-391 112-173 (201)
300 3bu8_A Telomeric repeat-bindin 37.8 1.3E+02 0.0046 24.4 7.3 20 365-384 123-142 (235)
301 1oyz_A Hypothetical protein YI 37.8 1.8E+02 0.0061 24.3 16.4 19 353-371 203-221 (280)
302 4aez_C MAD3, mitotic spindle c 36.9 1.1E+02 0.0038 25.1 7.0 54 100-173 131-184 (223)
303 1qsa_A Protein (soluble lytic 35.6 3.2E+02 0.011 26.6 21.3 46 402-447 296-343 (618)
304 2nsz_A Programmed cell death p 34.8 78 0.0027 23.3 5.4 23 288-310 10-32 (129)
305 3eiq_C Programmed cell death p 33.5 2.6E+02 0.0089 24.9 9.9 63 392-454 218-284 (358)
306 3ljn_A Hypothetical protein; a 33.0 2.5E+02 0.0085 24.6 9.8 80 332-416 177-266 (364)
307 3aji_A 26S proteasome non-ATPa 29.6 1.8E+02 0.0061 23.2 7.7 54 140-199 9-62 (231)
308 2ion_A PDCD4, programmed cell 29.6 84 0.0029 24.0 5.0 28 176-203 11-38 (152)
309 3l6a_A Eukaryotic translation 29.4 1.4E+02 0.0049 26.6 7.2 24 137-160 15-38 (364)
310 3hra_A Ankyrin repeat family p 29.3 2E+02 0.0068 22.3 9.1 70 142-217 10-82 (201)
311 3eu9_A Huntingtin-interacting 28.9 2.2E+02 0.0074 22.7 8.1 52 139-199 44-98 (240)
312 2b7e_A PRE-mRNA processing pro 28.4 80 0.0027 19.6 3.6 34 99-148 2-36 (59)
313 4fke_A Aminopeptidase N; zinc 27.0 5.2E+02 0.018 26.5 11.7 155 288-450 689-858 (909)
314 3jxi_A Vanilloid receptor-rela 26.7 2E+02 0.0069 23.5 7.6 131 294-434 11-185 (260)
315 2fe3_A Peroxide operon regulat 25.6 2.1E+02 0.0072 21.3 6.8 52 136-192 23-74 (145)
316 3kea_A K1L; tropism, ANK repea 25.2 2.1E+02 0.0073 24.0 7.5 18 337-354 204-221 (285)
317 4gq2_M Nucleoporin NUP120; bet 24.5 2.5E+02 0.0084 29.1 8.8 105 331-437 816-950 (950)
318 1k1a_A B-cell lymphoma 3-encod 24.3 2.3E+02 0.008 22.6 7.5 149 90-267 13-176 (241)
319 4ady_A RPN2, 26S proteasome re 23.4 6.3E+02 0.021 26.1 18.9 117 244-384 534-657 (963)
320 2etb_A Transient receptor pote 23.1 1.3E+02 0.0044 24.8 5.6 135 294-439 8-187 (256)
321 2xig_A Ferric uptake regulatio 22.9 2E+02 0.0067 21.7 6.0 53 135-192 27-79 (150)
322 2d2s_A Exocyst complex compone 22.8 2E+02 0.0069 23.7 6.5 92 290-384 23-119 (235)
323 2xig_A Ferric uptake regulatio 22.4 2.5E+02 0.0086 21.1 7.2 52 286-342 27-78 (150)
324 2fe3_A Peroxide operon regulat 22.0 2.5E+02 0.0085 20.9 7.1 50 288-342 24-73 (145)
325 4ets_A Ferric uptake regulatio 21.6 2.7E+02 0.0092 21.3 6.6 56 131-192 30-87 (162)
326 2ijq_A Hypothetical protein; s 21.2 2.6E+02 0.0088 21.5 6.2 52 366-417 42-101 (161)
327 2keb_A DNA polymerase subunit 20.3 2.2E+02 0.0076 19.7 7.3 63 251-331 26-88 (101)
328 1bd8_A P19INK4D CDK4/6 inhibit 20.3 1.8E+02 0.0063 21.3 5.6 14 403-416 110-123 (156)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-34 Score=286.56 Aligned_cols=414 Identities=7% Similarity=-0.045 Sum_probs=336.3
Q ss_pred CCCCChHHHHHhhccCCCCccchhhhHhHhhhCchh-------------------hhhhhcC--CCCCceeehhh---hc
Q 036356 8 PNGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-------------------CYLFDGL--FDRTIVFLDLY---HL 63 (462)
Q Consensus 8 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~~~~--~~~~~~~~~~~---~~ 63 (462)
++...|+.++..|.+.|++++|..+++++.+..... ..+|+.+ ..++..+++.+ |.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 455568888888888899988998888887544321 4445544 34566677766 88
Q ss_pred cCCChhhHHHHHHhhcC-------------------CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH---H
Q 036356 64 WSRTEWSAFGSFDGLLS-------------------NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL---L 121 (462)
Q Consensus 64 ~~~~~~~A~~~~~~m~~-------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---l 121 (462)
+.|++++|+++|+++.+ ++..+|+.++.++.+.|++++|.++|++|.+.++. .++. +
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHH
Confidence 88888888888886521 24678888888888888888888888888877641 1111 1
Q ss_pred HHHhh-------------------hcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHH
Q 036356 122 ISLTA-------------------VCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182 (462)
Q Consensus 122 ~~~~~-------------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~ 182 (462)
...+. ..+..+...+|+.++..|.+.|++++|.++|+++ ... +++..+++.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-----~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI-----NGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS-----TTG--GGCHHHHHHHHH
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh-----hcC--CchHHHHHHHHH
Confidence 10000 0001122233455567788899999999999998 333 588999999999
Q ss_pred HHHhcCCcccHHHHhhccC---CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhH
Q 036356 183 MYAKCGSVDLAPMFFDRTL---DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGK 254 (462)
Q Consensus 183 ~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~ 254 (462)
+|.+.|++++|.++|+++. ..+..+|+.++.++.+.| ++|..+|+++.+ .+..+++.+...|.+.|++++|.
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999886 347788999999999999 999999999988 46778999999999999999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHH
Q 036356 255 IVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM 334 (462)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 334 (462)
++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|++++ .. .+.+..+|+.++.+
T Consensus 394 ~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-~~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 394 RYFSKSSTMD-----------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-----RL-FQGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HT-TTTCSHHHHHHHHH
T ss_pred HHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----Hh-CccchHHHHHHHHH
Confidence 9999998864 2568899999999999999999999999943 32 23478899999999
Q ss_pred HHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcC
Q 036356 335 YAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR--HQHYARVVDLLARAG 405 (462)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g 405 (462)
|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999863 56789999999999999999999999999886 67888 789999999999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 406 YSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 406 ~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
++++|.++++++ ...| +..+|..+..+|...|++++|...+.++++.
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999998 3334 7889999999999999999999999887664
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=267.55 Aligned_cols=379 Identities=10% Similarity=-0.074 Sum_probs=263.4
Q ss_pred hhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcch
Q 036356 44 CYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 118 (462)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 118 (462)
+..+..++.+++..|+.+ +.+.|++++|+.+|++| ..|+..++..++.+|.+.|++++|..+|+++....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 147 (597)
T 2xpi_A 73 RNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN----- 147 (597)
T ss_dssp ---------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG-----
T ss_pred CCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc-----
Confidence 445556666778888888 99999999999999999 77888999999999999999999999999886442
Q ss_pred hHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhc--------------CCCCCchHHHHHHHHH
Q 036356 119 DLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS--------------EYRNNVIVNTVLIDMY 184 (462)
Q Consensus 119 ~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--------------~~~~~~~~~~~li~~~ 184 (462)
++..+++.++.+|.+.|++++|.++|+++. ... +.+++..+|+.++.+|
T Consensus 148 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 148 -------------RSSACRYLAAFCLVKLYDWQGALNLLGETN----PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp -------------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSC----TTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred -------------cchhHHHHHHHHHHHHhhHHHHHHHHhccC----CccccccccccccccccccchhHHHHHHHHHHH
Confidence 444555555555555555555555555320 111 2233455555555555
Q ss_pred HhcCCcccHHHHhhccCCCCc---chHHHH--------------------------------------HHHHHhCc--hH
Q 036356 185 AKCGSVDLAPMFFDRTLDKDV---VMRSAM--------------------------------------IVGYGLHE--WS 221 (462)
Q Consensus 185 ~~~g~~~~a~~~~~~m~~~~~---~~~~~l--------------------------------------i~~~~~~~--~~ 221 (462)
.+.|++++|.++|+++.+.++ ..+..+ +..|.+.| ++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 555555555555555442111 111111 11222233 45
Q ss_pred HHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhh---c---------------C
Q 036356 222 AFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC---R---------------Y 281 (462)
Q Consensus 222 a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~---------------~ 281 (462)
|.++|+++.. ++..+++.++.++.+.|++++|.++|+.+.+.+. .+..++..++..+ | .
T Consensus 291 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 5555555544 4455555555555555555555555555554432 1233333333221 1 2
Q ss_pred CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccc
Q 036356 282 QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVM 358 (462)
Q Consensus 282 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 358 (462)
+.+..+|+.++..|.+.|++++|.++|++++ +.. +.+..+|+.++.+|.+.|++++|.++|+++. ..+..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSS-----TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 4578899999999999999999999999953 322 2357799999999999999999999999876 347889
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-------PIELR--LSVRRA 428 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ 428 (462)
|+.++.+|.+.|++++|.++|+++.+ ..| +..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 99999999999999999999999998 344 4889999999999999999999999998 44787 789999
Q ss_pred HHHHHHccCChHHHHHHHHhhhhcC
Q 036356 429 LLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 429 l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
+..+|.+.|++++|+..+.+++..+
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999998887654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.9e-31 Score=252.60 Aligned_cols=212 Identities=11% Similarity=0.028 Sum_probs=178.2
Q ss_pred hhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe-eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHH
Q 036356 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV-TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNT 178 (462)
Q Consensus 100 ~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 178 (462)
..++.+.+++.+.+. .+.+ ..++.+|++|++.|++++|+++|++| .+.|++||..|||
T Consensus 7 s~~e~L~~~~~~k~~----------------~~spe~~l~~~id~c~k~G~~~~A~~lf~~M-----~~~Gv~pd~~tyn 65 (501)
T 4g26_A 7 SPSENLSRKAKKKAI----------------QQSPEALLKQKLDMCSKKGDVLEALRLYDEA-----RRNGVQLSQYHYN 65 (501)
T ss_dssp ---------------------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHH-----HHHTCCCCHHHHH
T ss_pred chHHHHHHHHHHhcc----------------cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHcCCCCCHhHHH
Confidence 445667777777776 4443 46889999999999999999999999 8999999999999
Q ss_pred HHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHH
Q 036356 179 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHG 258 (462)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 258 (462)
+||.+|++.+..+++ .+.+.++.|.++|+
T Consensus 66 ~Li~~c~~~~~~~~~---------------------------------------------------~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 66 VLLYVCSLAEAATES---------------------------------------------------SPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHTTCCCCSSS---------------------------------------------------SCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCchhhh---------------------------------------------------hhcchHHHHHHHHH
Confidence 999999988765543 34566788999999
Q ss_pred HHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhc
Q 036356 259 FMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC 338 (462)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 338 (462)
+|.+.|+. ||..+|+++|.+|++.|++++|.++|++ |...|+.||..||+++|.+|++.
T Consensus 95 ~M~~~G~~----------------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~-----M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 95 QMIVDKVV----------------PNEATFTNGARLAVAKDDPEMAFDMVKQ-----MKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp HHHHTTCC----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHH-----HHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCC----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCccceehHHHHHHHHC
Confidence 99999985 9999999999999999999999999999 88899999999999999999999
Q ss_pred CCcchHHHHhccCC----CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356 339 GSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 339 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 404 (462)
|++++|.++|++|. .||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999997 5899999999999999999999999999999999999999999999999864
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.3e-30 Score=247.84 Aligned_cols=182 Identities=9% Similarity=0.062 Sum_probs=171.7
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC---------hhHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY---------AEEA 304 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a 304 (462)
...++.+|.+|++.|++++|.++|++|.+.|+. ||..+||+||.+|++.+. +++|
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~----------------pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ----------------LSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC----------------CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----------------CCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 456888999999999999999999999999985 888899999998887665 6889
Q ss_pred HHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccchHHHHHHHHhcCChHHHHHHHH
Q 036356 305 VKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMRSAMTVGYGLHGLGEEGWVLFH 380 (462)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~ 380 (462)
.++|++ |...|+.||..||++||.+|++.|++++|.++|++|. .||..||++||.+|++.|++++|.++|+
T Consensus 90 ~~lf~~-----M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 90 FDIFKQ-----MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHH-----HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH-----HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 999999 8889999999999999999999999999999999997 5899999999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHcc
Q 036356 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM---PIELRLSVRRALLSAWKIP 436 (462)
Q Consensus 381 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~~ 436 (462)
+|.+.|+.||..||++||.+|++.|++++|.+++++| +..|+..||+.++..++..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 8999999999999998864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.1e-24 Score=205.21 Aligned_cols=337 Identities=11% Similarity=0.024 Sum_probs=164.7
Q ss_pred cCCChhhHHHHHHhh--cCCC-cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHH
Q 036356 64 WSRTEWSAFGSFDGL--LSNE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAM 140 (462)
Q Consensus 64 ~~~~~~~A~~~~~~m--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~l 140 (462)
+.|++++|+..++.+ ..|+ ...+..+...+.+.|++++|...++...+..+ .+..+|..+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-----------------~~~~~~~~l 73 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-----------------LLAEAYSNL 73 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------CchHHHHHH
Confidence 345555555555544 2222 23333444444445555555555555544432 344455555
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCC--CC-cchHHHHHHHHH
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-VVMRSAMIVGYG 216 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~ 216 (462)
..++.+.|++++|++.|+++ .. ..|+ ..+|..+..++.+.|++++|.+.|+++.+ |+ ...+..+...+.
T Consensus 74 g~~~~~~g~~~~A~~~~~~a-----l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHA-----LR--LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-----HH--HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH-----HH--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 55555555555555555554 11 1222 33445555555555555555555554431 22 223333344444
Q ss_pred hCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH
Q 036356 217 LHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291 (462)
Q Consensus 217 ~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 291 (462)
..| ++|...|+++.. |+ ..+|..+...+.+.|++++|...|+.+.+.+. .+...|..+
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~l 209 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-----------------NFLDAYINL 209 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------CcHHHHHHH
Confidence 444 555555555544 22 34455555555555555555555555555431 234445555
Q ss_pred HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHH
Q 036356 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYG 367 (462)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 367 (462)
...+...|++++|...|.+.+ . ..| +..++..+..+|.+.|++++|...|+++.+ | +..+|..+...+.
T Consensus 210 g~~~~~~~~~~~A~~~~~~al-----~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRAL-----S--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHH-----H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH-----h--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 555555555555555555522 1 122 244555555555555555555555555432 2 2334555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHH
Q 036356 368 LHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENML 444 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 444 (462)
+.|++++|.+.++++.+ ..| +..+|..+...+.+.|++++|.+.++++ ...| +..++..+...+...|++++|+.
T Consensus 283 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555555 223 2445555555555555555555555554 3223 34455555555555555555555
Q ss_pred HHHhhh
Q 036356 445 QTIRGI 450 (462)
Q Consensus 445 ~~~~~~ 450 (462)
.+.+++
T Consensus 361 ~~~~a~ 366 (388)
T 1w3b_A 361 HYKEAI 366 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.5e-24 Score=201.84 Aligned_cols=327 Identities=12% Similarity=0.081 Sum_probs=279.6
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|...++.. .+.+..+|..+..++.+.|++++|...|+++.+..+ .+..+|.
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~ 105 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-----------------DFIDGYI 105 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-----------------chHHHHH
Confidence 88899999999999988 555678999999999999999999999999998754 4566799
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-chHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHHHH
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMIVG 214 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~ 214 (462)
.+..++.+.|++++|.+.|+++ .. ..|+ ...+..+...+...|++++|.+.|+++.. | +..+|+.+...
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~a-----l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSA-----LQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHH-----HH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-----HH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999997 33 2344 55677788899999999999999998763 3 56788999999
Q ss_pred HHhCc--hHHHHHHHhhhc--CC-cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356 215 YGLHE--WSAFGSFDGLLS--NE-ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289 (462)
Q Consensus 215 ~~~~~--~~a~~~~~~m~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (462)
+...| ++|...|+++.. |+ ...+..+...+...|++++|...+....+.. +.+..++.
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~ 241 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-----------------PNHAVVHG 241 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----------------TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------cCCHHHHH
Confidence 99999 999999999988 44 5678888899999999999999999998864 24678899
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHH
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGY 366 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 366 (462)
.+...|.+.|++++|...|++.+ ..+ +.+..+|..+...|.+.|++++|...|+++. ..+..+|..+...+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al-----~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAI-----ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-----HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-----hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 99999999999999999999943 322 2246789999999999999999999999886 34677899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccC
Q 036356 367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPM 437 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~ 437 (462)
...|++++|.+.++++.+ ..|+ ..++..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999998 5666 788999999999999999999999998 66664 556666666655544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4e-21 Score=187.67 Aligned_cols=344 Identities=11% Similarity=-0.055 Sum_probs=278.6
Q ss_pred hccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNA 139 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~ 139 (462)
+.+.|++++|+..|+++ ..|+..+|..+..++.+.|++++|...++++.+.++ .+..+|..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~ 78 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-----------------DYSKVLLR 78 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-----------------CCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-----------------HHHHHHHH
Confidence 77889999999999999 678999999999999999999999999999999865 56788999
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC------------------------------------------------
Q 036356 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR------------------------------------------------ 171 (462)
Q Consensus 140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------------------------------------------------ 171 (462)
+..++.+.|++++|...|+++ ...+..
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVL-----SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD 153 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----HHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHH-----HhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh
Confidence 999999999999999999987 222210
Q ss_pred ------------------------------CCchHHHHHHHHHHh---cCCcccHHHHhhccCC----------------
Q 036356 172 ------------------------------NNVIVNTVLIDMYAK---CGSVDLAPMFFDRTLD---------------- 202 (462)
Q Consensus 172 ------------------------------~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~---------------- 202 (462)
.+...+......+.. .|++++|...|+++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (514)
T 2gw1_A 154 KQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233 (514)
T ss_dssp ---CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH
T ss_pred hccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC
Confidence 012233333333333 7889999998877543
Q ss_pred C-CcchHHHHHHHHHhCc--hHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHH
Q 036356 203 K-DVVMRSAMIVGYGLHE--WSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTA 277 (462)
Q Consensus 203 ~-~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 277 (462)
| +...+..+...+...| ++|...|++... |+...+..+..++...|++++|...++.+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------- 300 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD------------- 300 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------------
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------------
Confidence 1 2345667777788888 999999998887 667778888888899999999999999888754
Q ss_pred hhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---C
Q 036356 278 VCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---K 354 (462)
Q Consensus 278 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 354 (462)
+.+...|..+...|...|++++|...|.+.+ ... +.+...+..+...|...|++++|...|+++.+ .
T Consensus 301 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 301 ----SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-----ELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp ----TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH-----HTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred ----cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 2467788899999999999999999999843 222 23567888899999999999999999998763 3
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-C
Q 036356 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-------HQHYARVVDLLAR---AGYSNHAFKFIMNM-PIEL-R 422 (462)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~ 422 (462)
+...|..+...|...|++++|...++++.+. .|+ ...|..+...+.. .|++++|.+.+++. ...| +
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 5678888999999999999999999998873 333 3388999999999 99999999999988 3334 5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 423 LSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
...+..+...+...|++++|...+.+.+..
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 778899999999999999999888876654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.2e-20 Score=181.09 Aligned_cols=301 Identities=11% Similarity=0.000 Sum_probs=220.6
Q ss_pred CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.+...+..+...+.+.|++++|..+|+++.+..+ .+..+|..+..++...|++++|+..|+++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-----------------DNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455677777777777777777777777776654 56667777777777777777777777775
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc------chHHHHHH------------HHHhCc--h
Q 036356 161 MDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV------VMRSAMIV------------GYGLHE--W 220 (462)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~~li~------------~~~~~~--~ 220 (462)
...+ +.+..++..+..+|.+.|++++|...|+++.+.++ ..+..+.. .+...| +
T Consensus 87 -----l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 87 -----IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp -----HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -----HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 2222 23456677777777777777777777777654222 34444422 255555 8
Q ss_pred HHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356 221 SAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297 (462)
Q Consensus 221 ~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 297 (462)
+|+..|+++.. .+...+..+..++.+.|++++|...++.+.+.. +.+..+|..+...|.+
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-----------------NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----------------CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHH
Confidence 88888888777 456678888888889999999999999888764 2567888889999999
Q ss_pred CCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHH------------HHHHHhcCCcchHHHHhccCCC--CC-----cc
Q 036356 298 NGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVL------------IDMYAKCGSVDLAPMFFDRTLD--KD-----VV 357 (462)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~--~~-----~~ 357 (462)
.|++++|...|.+++ .. .|+ ...+..+ ...|.+.|++++|...|+++.+ |+ ..
T Consensus 224 ~g~~~~A~~~~~~~~-----~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 224 LGDHELSLSEVRECL-----KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296 (450)
T ss_dssp TTCHHHHHHHHHHHH-----HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 999999999998843 22 333 3344443 7788889999999999988763 44 33
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALL 430 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~ 430 (462)
.|..+...+.+.|++++|...++++.+ ..|+ ...|..+..+|...|++++|.+.+++. .+.|+ ...+..+.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 677888899999999999999999887 4564 788899999999999999999999988 66665 44555554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=2.4e-20 Score=179.04 Aligned_cols=338 Identities=12% Similarity=-0.001 Sum_probs=267.2
Q ss_pred Cceeehhh---hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhh
Q 036356 54 TIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV 127 (462)
Q Consensus 54 ~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~ 127 (462)
+...|..+ +.+.|++++|+..|+.+ .+.+..+|..+..++.+.|++++|...|+++.+.++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------------- 91 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM------------- 91 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------------
Confidence 34455555 88999999999999999 455678999999999999999999999999999876
Q ss_pred cCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-c---hHHHHH------------HHHHHhcCCcc
Q 036356 128 CRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-V---IVNTVL------------IDMYAKCGSVD 191 (462)
Q Consensus 128 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~---~~~~~l------------i~~~~~~g~~~ 191 (462)
.+..+|..+...|.+.|++++|.+.|+++ .. ..|+ . ..+..+ ...+.+.|+++
T Consensus 92 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 92 ----DFTAARLQRGHLLLKQGKLDEAEDDFKKV-----LK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ----CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-----Hh--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 56788999999999999999999999997 33 2343 3 555555 44489999999
Q ss_pred cHHHHhhccC---CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHh
Q 036356 192 LAPMFFDRTL---DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKL 263 (462)
Q Consensus 192 ~a~~~~~~m~---~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 263 (462)
+|...|+++. ..+...+..+..+|...| ++|...|+++.. .+..++..+..++.+.|++++|...++.+.+.
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999876 346678888999999999 999999999988 56788999999999999999999999999876
Q ss_pred CCCcchHHHHHHHHhhcCCCCHhHHHHH------------HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-----hh
Q 036356 264 GLELESDLLISLTAVCRYQPNVTLWNAM------------ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-----VI 326 (462)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~ 326 (462)
.. .+...+..+ ...+.+.|++++|...|.+++ .. .|+ ..
T Consensus 241 ~p-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l-----~~--~p~~~~~~~~ 296 (450)
T 2y4t_A 241 DQ-----------------DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-----KT--EPSIAEYTVR 296 (450)
T ss_dssp CT-----------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HH--CCSSHHHHHH
T ss_pred CC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hc--CCcchHHHHH
Confidence 42 233334333 788999999999999999953 22 343 45
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH--
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL-- 400 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-- 400 (462)
.|..+...+.+.|++++|...++++. .| +...|..+..+|...|++++|...++++.+ +.|+ ...+..+..+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 78889999999999999999999876 34 678899999999999999999999999998 7787 4555555533
Q ss_pred ----------HHhcC-----ChHHHHHHHHhC--CCCCCH-----------HHHHHHHHHHHccCChHH
Q 036356 401 ----------LARAG-----YSNHAFKFIMNM--PIELRL-----------SVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 401 ----------~~~~g-----~~~~A~~~~~~m--~~~p~~-----------~~~~~l~~~~~~~~~~~~ 441 (462)
|...| +.+++.+.+++. ...||. ..+..+..+|-..++.+.
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33334 556667777763 233331 255566666666665543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.3e-20 Score=179.70 Aligned_cols=370 Identities=9% Similarity=-0.048 Sum_probs=290.7
Q ss_pred hHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcchH
Q 036356 13 PPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENEY 86 (462)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~~ 86 (462)
+..+-..+.+.|+++.|...|+++++.. |+...|..+ +...|++++|+..|+.+ .+.+..+|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~------------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 76 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK------------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC------------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence 4556677889999999999999999876 576677666 99999999999999999 44456789
Q ss_pred HHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH--HHHHhhh-------------------------------------
Q 036356 87 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL--LISLTAV------------------------------------- 127 (462)
Q Consensus 87 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--l~~~~~~------------------------------------- 127 (462)
..+..++.+.|++++|...|+++.+.+..-.... ++..+.+
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 9999999999999999999999987764111110 1111100
Q ss_pred --------------cCCC--------C-CeeeHHHHHHHHHh---CCChhHHHHHHHHhhhhhhhh-----cC-C-----
Q 036356 128 --------------CRYQ--------P-NVTLRNAMISGYAK---NGYAEEAVKLFPKWMDYYIGK-----SE-Y----- 170 (462)
Q Consensus 128 --------------~~~~--------p-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~-----~~-~----- 170 (462)
.... | +...+......+.. .|++++|..+|++. .. .. .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~ 231 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA-----ARLFEEQLDKNNEDEK 231 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH-----HHHHHHHTTTSTTCHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH-----HHHhhhhhccCccccc
Confidence 0000 1 12223333333443 89999999999997 33 11 1
Q ss_pred --CCCchHHHHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHH
Q 036356 171 --RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTAL 241 (462)
Q Consensus 171 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll 241 (462)
+.+..++..+...+...|++++|...|++.. .|+...|..+...+...| ++|...+++... .+...+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 311 (514)
T 2gw1_A 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence 2245678889999999999999999999875 344667788888888888 999999999888 4677888899
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (462)
..+...|++++|...++...+... .+...+..+...+.+.|++++|...+.+.+ .. .
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~-~ 368 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDP-----------------ENIFPYIQLACLAYRENKFDDCETLFSEAK-----RK-F 368 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCS-----------------SCSHHHHHHHHHTTTTTCHHHHHHHHHHHH-----HH-S
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCh-----------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HH-c
Confidence 999999999999999999988642 467788999999999999999999999853 22 2
Q ss_pred CCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-C------ccchHHHHHHHHh---cCChHHHHHHHHHHHHCCCCC
Q 036356 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-D------VVMRSAMTVGYGL---HGLGEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p 389 (462)
+.+...+..+...|.+.|++++|...|+++.+ | + ...|..+...+.. .|++++|...++++.+ ..|
T Consensus 369 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 446 (514)
T 2gw1_A 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDP 446 (514)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCT
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCc
Confidence 23567888899999999999999999998763 2 2 2378899999999 9999999999999998 456
Q ss_pred C-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036356 390 R-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS 424 (462)
Q Consensus 390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 424 (462)
+ ..++..+...|.+.|++++|.+.+++. ...|+..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 5 778899999999999999999999998 5556543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.7e-18 Score=170.10 Aligned_cols=346 Identities=12% Similarity=-0.035 Sum_probs=266.6
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+.+.|++++|+..|+++ .+.+..+|..+..++.+.|++++|.+.++++.+.++ .+..++.
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~ 97 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-----------------DHSKALL 97 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------chHHHHH
Confidence 88999999999999999 445678899999999999999999999999999875 5778899
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC------------------------------------CCCch-------
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY------------------------------------RNNVI------- 175 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------------------------------~~~~~------- 175 (462)
.+...+...|++++|.+.|+.+. ...- .|+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLS-----LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh-----cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 99999999999999999986541 0000 01100
Q ss_pred -----------------------HHHHHHHHHHh--------cCCcccHHHHhhccCCCCcc----------hHHHHHHH
Q 036356 176 -----------------------VNTVLIDMYAK--------CGSVDLAPMFFDRTLDKDVV----------MRSAMIVG 214 (462)
Q Consensus 176 -----------------------~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~----------~~~~li~~ 214 (462)
....+...+.. .|++++|..+++++.+.++. ++..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 11112211111 14778888888877643221 34455556
Q ss_pred HHhCc--hHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH
Q 036356 215 YGLHE--WSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA 290 (462)
Q Consensus 215 ~~~~~--~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 290 (462)
+...| ++|...|++... |+...+..+...+...|++++|...++.+.+.. +.+..+|..
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~ 315 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-----------------PEYPPTYYH 315 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-----------------TTCHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-----------------CCCHHHHHH
Confidence 66666 899999999888 777888888899999999999999999998865 246788999
Q ss_pred HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHH
Q 036356 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYG 367 (462)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 367 (462)
+...+...|++++|...|.+.+ ... +.+...+..+...|...|++++|...|++..+ .+...|..+...+.
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~-----~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQ-----SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH-----HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999853 222 22467888899999999999999999998763 45668889999999
Q ss_pred hcCChHHHHHHHHHHHHCC-----CCCCHhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036356 368 LHGLGEEGWVLFHHIRKHG-----IEPRHQHYARVVDLLARA----------GYSNHAFKFIMNM-PIEL-RLSVRRALL 430 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~l~ 430 (462)
..|++++|.+.++++.+.. .......+..+...+... |++++|...+++. ...| +...|..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999987741 111123345556677777 9999999999998 3334 577899999
Q ss_pred HHHHccCChHHHHHHHHhhhhc
Q 036356 431 SAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 431 ~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
..+...|++++|...+.+.+..
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999888876654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=8e-18 Score=165.23 Aligned_cols=366 Identities=10% Similarity=-0.017 Sum_probs=270.7
Q ss_pred ChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcch
Q 036356 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENE 85 (462)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~ 85 (462)
.|..+-..+.+.|+++.|...|+.+++... .+...|..+ +.+.|++++|+..|+++ .+.+..+
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 95 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----------NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCC-----------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHH
Confidence 456677788899999999999999998763 355666666 88999999999999999 4455778
Q ss_pred HHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHH-------------HHhhhcC---------CCCCe---------
Q 036356 86 YGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLI-------------SLTAVCR---------YQPNV--------- 134 (462)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~-------------~~~~~~~---------~~p~~--------- 134 (462)
+..+..++...|++++|...|+.+. .... ..+..+ ..+.+.- ..|+.
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVLS-LNGD-FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-cCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 9999999999999999999996332 1110 000000 0000000 00110
Q ss_pred -----------------e----eHHHHHHHHHhC--------CChhHHHHHHHHhhhhhhhhcCCCCC--------chHH
Q 036356 135 -----------------T----LRNAMISGYAKN--------GYAEEAVKLFPKWMDYYIGKSEYRNN--------VIVN 177 (462)
Q Consensus 135 -----------------~----~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~~~~--------~~~~ 177 (462)
. ....+...+... |++++|..+|+++ .. ..|+ ..++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~-----l~--~~p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL-----LS--ANTVDDPLRENAALAL 246 (537)
T ss_dssp SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH-----HC----CCCHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-----HH--HCCCcchhhHHHHHHH
Confidence 1 112222222211 4788999999886 22 2333 2356
Q ss_pred HHHHHHHHhcCCcccHHHHhhccC--CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccch
Q 036356 178 TVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFL 250 (462)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~ 250 (462)
..+...+...|++++|...|++.. .|+...|..+...+...| ++|...|++... .+..++..+...+...|++
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Confidence 777788899999999999999876 356667777788888888 999999999988 4567888899999999999
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (462)
++|...++.+.+... .+...|..+...|...|++++|...|.+.+ ... +.+...+..
T Consensus 327 ~~A~~~~~~a~~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-----~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNP-----------------ENVYPYIQLACLLYKQGKFTESEAFFNETK-----LKF-PTLPEVPTF 383 (537)
T ss_dssp HHHHHHHHHHHHHCT-----------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCTHHHHH
T ss_pred HHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HhC-CCChHHHHH
Confidence 999999999998752 456789999999999999999999999853 222 334678888
Q ss_pred HHHHHHhcCCcchHHHHhccCCC--C-Cccc------hHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCC-
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTLD--K-DVVM------RSAMTVGYGLH----------GLGEEGWVLFHHIRKHGIEPR- 390 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~------~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~- 390 (462)
+...|...|++++|...|+++.+ | +... +..+...+... |++++|...|++..+ ..|+
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~ 461 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRS 461 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCC
Confidence 99999999999999999998763 1 2222 33445677777 999999999999998 5565
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR 422 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 422 (462)
...+..+...|.+.|++++|.+.+++. .+.|+
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 778999999999999999999999998 33444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=1.3e-16 Score=147.85 Aligned_cols=303 Identities=11% Similarity=-0.010 Sum_probs=202.1
Q ss_pred cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhh
Q 036356 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD 162 (462)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (462)
...+..+...+...|++++|...|+++.+..+ .+..++..+...+...|++++|...|++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-- 63 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-----------------DNYIAYYRRATVFLAMGKSKAALPDLTKV-- 63 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----------------ccHHHHHHHHHHHHHccCHHHHHHHHHHH--
Confidence 34566777777888888888888888887754 56677888888888888888888888886
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc------chHHHH------------HHHHHhCc--hHH
Q 036356 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV------VMRSAM------------IVGYGLHE--WSA 222 (462)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~~l------------i~~~~~~~--~~a 222 (462)
... .+.+...+..+...|...|++++|...|++..+.++ ..+..+ ...+...| ++|
T Consensus 64 ---~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 64 ---IAL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp ---HHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHh-CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 222 223456777888888888888888888887754322 223222 24455555 777
Q ss_pred HHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356 223 FGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299 (462)
Q Consensus 223 ~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 299 (462)
...+++... .+...+..+..++...|++++|...++.+.+.. +.+...|..+...+...|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-----------------SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcC
Confidence 777777666 345566667777777788888887777777653 245667777777777778
Q ss_pred ChhHHHHHhhHHHHHHHHhhCCCCc-hhHHH------------HHHHHHHhcCCcchHHHHhccCCC--CCcc-----ch
Q 036356 300 YAEEAVKLFPKWMDYYIGKSEYRNN-VIVNT------------VLIDMYAKCGSVDLAPMFFDRTLD--KDVV-----MR 359 (462)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~ 359 (462)
++++|...|.+.+ .. .|+ ...+. .+...+.+.|++++|...+++..+ |+.. .+
T Consensus 203 ~~~~A~~~~~~a~-----~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 275 (359)
T 3ieg_A 203 DHELSLSEVRECL-----KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK 275 (359)
T ss_dssp CHHHHHHHHHHHH-----HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHH-----hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 8888887777743 21 122 22222 224557777777777777776652 3321 23
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWK 434 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~ 434 (462)
..+...+...|++++|.+.+++..+ ..| +..+|..+...+...|++++|.+.+++. ...|+ ...+..+..+..
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4466677777788888887777777 345 3667777777777788888888877776 55554 444454444433
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.2e-16 Score=144.63 Aligned_cols=287 Identities=10% Similarity=-0.051 Sum_probs=198.1
Q ss_pred cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 036356 79 LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFP 158 (462)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 158 (462)
.+.+...+..+...+...|++++|..+++++.+..+ .+...+..++..+...|++++|..+++
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~ 80 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-----------------FHASCLPVHIGTLVELNKANELFYLSH 80 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCTTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CChhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 445566677777777777888888888888877654 455666667777778888888888888
Q ss_pred HhhhhhhhhcCCCCCchHHHHHHHHHHhcC-CcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchH
Q 036356 159 KWMDYYIGKSEYRNNVIVNTVLIDMYAKCG-SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237 (462)
Q Consensus 159 ~m~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~ 237 (462)
+. ... .+.+..++..+...+...| ++++|...|++..+.+. .+...+
T Consensus 81 ~~-----~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~ 128 (330)
T 3hym_B 81 KL-----VDL-YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK--------------------------TYGPAW 128 (330)
T ss_dssp HH-----HHH-CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT--------------------------TCTHHH
T ss_pred HH-----HHh-CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--------------------------ccHHHH
Confidence 76 222 2335667777777777777 77777777776553221 122334
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317 (462)
Q Consensus 238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (462)
..+..++...|++++|...++.+.+... .+...+..+...|...|++++|...+.+.+
T Consensus 129 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----- 186 (330)
T 3hym_B 129 IAYGHSFAVESEHDQAMAAYFTAAQLMK-----------------GCHLPMLYIGLEYGLTNNSKLAERFFSQAL----- 186 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTT-----------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcc-----------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----
Confidence 4555556666777777777777666532 344556666777777777777777777632
Q ss_pred hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC------------CCccchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD------------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (462)
.. .+.+...+..+...|...|++++|...|++..+ .+..+|..+...|...|++++|...+++..+
T Consensus 187 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 264 (330)
T 3hym_B 187 SI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV- 264 (330)
T ss_dssp TT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred Hh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 21 123456677777777777777777777765541 2345788888999999999999999999888
Q ss_pred CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HccCCh
Q 036356 386 GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAW-KIPMQQ 439 (462)
Q Consensus 386 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~-~~~~~~ 439 (462)
..|+ ...|..+...+.+.|++++|.+.+++. .+.| +...+..+..++ ...|+.
T Consensus 265 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 265 -LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp -HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred -hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 4454 678888999999999999999999998 5666 566777777777 445553
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=7.6e-19 Score=174.13 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCC-------CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTL-------DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARV 397 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 397 (462)
..|||+||++||+.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4456666666666666666666664432 356666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCh-HHHHHHHHhC---CCCCCHHHHHHHHHHHHc
Q 036356 398 VDLLARAGYS-NHAFKFIMNM---PIELRLSVRRALLSAWKI 435 (462)
Q Consensus 398 i~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~l~~~~~~ 435 (462)
|+++++.|+. ++|.++|++| |+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666653 5566666666 666666666666654443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.75 E-value=5.9e-17 Score=150.14 Aligned_cols=294 Identities=13% Similarity=0.010 Sum_probs=237.2
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|+..|+.+ .+.+..++..+..++...|++++|...++++.+..+ .+...|.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~ 75 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-----------------DFTAARL 75 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------CcchHHH
Confidence 78899999999999999 445577899999999999999999999999998865 4668899
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC----CchHHHHH------------HHHHHhcCCcccHHHHhhccC-
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVL------------IDMYAKCGSVDLAPMFFDRTL- 201 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~- 201 (462)
.+...+...|++++|...|++. .. ..| +...+..+ ...+...|++++|...+++..
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~-----~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKV-----LK--SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH-----HT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHH-----Hh--cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999996 22 233 34444444 578899999999999999875
Q ss_pred --CCCcchHHHHHHHHHhCc--hHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHH
Q 036356 202 --DKDVVMRSAMIVGYGLHE--WSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274 (462)
Q Consensus 202 --~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (462)
..+...+..+...+...| ++|...+++... .+...+..+...+...|++++|...++...+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------- 219 (359)
T 3ieg_A 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--------- 219 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------
T ss_pred hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---------
Confidence 345677888888898888 999999999988 4567888899999999999999999999988652
Q ss_pred HHHhhcCCCCHhHHH------------HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-Cc--hhHHHHHHHHHHhcC
Q 036356 275 LTAVCRYQPNVTLWN------------AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NN--VIVNTVLIDMYAKCG 339 (462)
Q Consensus 275 l~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~--~~~~~~li~~~~~~g 339 (462)
.+...+. .+...+.+.|++++|...+.+.+ ..... +. ...+..+...|.+.|
T Consensus 220 --------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 220 --------DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-----KTEPSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hcCCCchHHHHHHHHHHHHHHHHcc
Confidence 2222222 33667899999999999999853 22221 11 133556778999999
Q ss_pred CcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356 340 SVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR 403 (462)
Q Consensus 340 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 403 (462)
++++|...+++..+ | +..+|..+...|...|++++|.+.|++..+ +.|+ ...+..+..+...
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 99999999998763 4 677889999999999999999999999998 7787 4556666555443
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=4.2e-19 Score=175.94 Aligned_cols=150 Identities=10% Similarity=-0.009 Sum_probs=123.6
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCccch
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDVVMR 359 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~ 359 (462)
-..|||++|++|++.|++++|.++|.+|.. |...|+.||+.|||+||++||+.|++++|.++|++|. .||++||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~--m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHG--QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--SHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 456899999999999999999999988432 3457899999999999999999999999999999997 5999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHH
Q 036356 360 SAMTVGYGLHGLG-EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR------LSVRRALLSA 432 (462)
Q Consensus 360 ~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~------~~~~~~l~~~ 432 (462)
|+||.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+-++.+.++..+ +.|+ ..+...|..-
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~--f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT--FSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC--CCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc--cCCCCCCcccccchHHHHHH
Confidence 9999999999985 78999999999999999999999999888876544444444333 3332 3344455555
Q ss_pred HHccC
Q 036356 433 WKIPM 437 (462)
Q Consensus 433 ~~~~~ 437 (462)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55544
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.6e-17 Score=151.46 Aligned_cols=284 Identities=12% Similarity=0.003 Sum_probs=120.8
Q ss_pred hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHH
Q 036356 62 HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMI 141 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li 141 (462)
..+.|+.++|.++++++.. ..+|..+..++.+.|++++|.+.|.+ .+|..+|..++
T Consensus 13 l~~~~~ld~A~~fae~~~~--~~vWs~La~A~l~~g~~~eAIdsfik----------------------a~D~~~y~~V~ 68 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIK----------------------ADDPSSYMEVV 68 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCHHHHHHHHHc----------------------CCCHHHHHHHH
Confidence 5566778888888888833 34888888888888888888888853 25666888888
Q ss_pred HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--
Q 036356 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE-- 219 (462)
Q Consensus 142 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~-- 219 (462)
.++...|++++|+++++.. .+ ..++..+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|
T Consensus 69 ~~ae~~g~~EeAi~yl~~a-----rk--~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 69 QAANTSGNWEELVKYLQMA-----RK--KARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTTC---C----------------CT
T ss_pred HHHHhCCCHHHHHHHHHHH-----HH--hCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCH
Confidence 8888888888888866654 22 245567788888888888888888888764 66778888888888888
Q ss_pred hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299 (462)
Q Consensus 220 ~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 299 (462)
++|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|
T Consensus 139 eeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA----------------------~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 139 DAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA----------------------NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp TTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH----------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc----------------------CCchhHHHHHHHHHHcC
Confidence 8888888877 47888888888888888888888876 36778888888888888
Q ss_pred ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHH
Q 036356 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGW 376 (462)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 376 (462)
+++.|...... +..++.....++..|.+.|++++|..+++.... .....|+-|..+|++- ++++..
T Consensus 192 ef~lA~~~~l~----------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ 260 (449)
T 1b89_A 192 EFRLAQMCGLH----------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMR 260 (449)
T ss_dssp CHHHHHHTTTT----------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHH
T ss_pred cHHHHHHHHHH----------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 88888655543 222333344677888888888888888887653 3444667776666654 334444
Q ss_pred HHHHHHHHC-CCCC------CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 377 VLFHHIRKH-GIEP------RHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 377 ~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+.++...++ +++| +...|..++..|...++++.|....-+-
T Consensus 261 ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 261 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 444433333 4555 3567888888888888888887655443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=5e-16 Score=142.19 Aligned_cols=278 Identities=11% Similarity=-0.076 Sum_probs=214.8
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|+++|+++ .+.+...+..++.++...|++++|..+++++.+..+ .+...|.
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~ 94 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-----------------SNPVSWF 94 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----------------CCHHHHH
Confidence 77789999999999999 445567788888999999999999999999998865 5778899
Q ss_pred HHHHHHHhCC-ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHh
Q 036356 139 AMISGYAKNG-YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGL 217 (462)
Q Consensus 139 ~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 217 (462)
.+...+...| ++++|.+.|++. ... .+.+...|..+...|...|++++|...+++..+.+.
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a-----~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------ 156 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKA-----TTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK------------ 156 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHH-----HTT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH-----HHh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc------------
Confidence 9999999999 999999999996 322 234577888899999999999999999887653211
Q ss_pred CchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356 218 HEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297 (462)
Q Consensus 218 ~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 297 (462)
.+...+..+...+...|++++|...++...+.. +.+...+..+...+..
T Consensus 157 --------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 157 --------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-----------------PEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp --------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------TTCHHHHHHHHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----------------CCChHHHHHHHHHHHH
Confidence 122334445666777888888888888887754 2466778888888999
Q ss_pred CCChhHHHHHhhHHHHHHHHhhC---CCCchhHHHHHHHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCC
Q 036356 298 NGYAEEAVKLFPKWMDYYIGKSE---YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGL 371 (462)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 371 (462)
.|++++|...+.+.+...-...+ ...+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|+
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 99999999998885431100001 13345788888889999999999999998775 2466778888999999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH-HhcCCh
Q 036356 372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLL-ARAGYS 407 (462)
Q Consensus 372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~-~~~g~~ 407 (462)
+++|.+.+++..+ +.|+ ...+..+..++ ...|+.
T Consensus 286 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 286 FENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 9999999998887 6675 66777777777 344544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.5e-16 Score=148.26 Aligned_cols=293 Identities=11% Similarity=-0.014 Sum_probs=192.6
Q ss_pred cCCChhhHHH-HHHhh--cCC-----CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee
Q 036356 64 WSRTEWSAFG-SFDGL--LSN-----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 135 (462)
Q Consensus 64 ~~~~~~~A~~-~~~~m--~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~ 135 (462)
..|++++|++ .|++. ..| +...+..+...+.+.|++++|...|+++.+..+ .+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~ 99 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----------------KHME 99 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----------------TCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHH
Confidence 4578888888 88866 222 356788888999999999999999999998765 5677
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc---chHHHHH
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMI 212 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li 212 (462)
+|..+...+.+.|++++|.+.|++. .... +.+..++..+...|...|++++|...++++...++ ..+....
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~a-----l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRC-----LELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHH-----HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 8888999999999999999999986 3332 34677888899999999999999999987653221 1111100
Q ss_pred HHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHH
Q 036356 213 VGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMI 292 (462)
Q Consensus 213 ~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li 292 (462)
... + ...+. ..+.. +..+...|++++|...++.+.+.... .++..++..+.
T Consensus 174 ~~~---~---------~~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~---------------~~~~~~~~~l~ 224 (368)
T 1fch_A 174 EGA---G---------GAGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPT---------------SIDPDVQCGLG 224 (368)
T ss_dssp -------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTT---------------SCCHHHHHHHH
T ss_pred HHh---h---------hhccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcC---------------cccHHHHHHHH
Confidence 000 0 00000 01111 22222678888888888888876421 12577788888
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhc
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLH 369 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 369 (462)
..|.+.|++++|...|.+.+. . .+.+...|..+...|.+.|++++|...|++..+ .+..+|..+...|.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALS-----V-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-----h-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 888888888888888887432 2 122456777777777777777777777776652 3455667777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCC------------HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 370 GLGEEGWVLFHHIRKHGIEPR------------HQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 370 ~~~~~a~~~~~~m~~~g~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
|++++|...|++..+. .|+ ..+|..+..+|...|++++|..++++
T Consensus 299 g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 7777777777776662 222 45677777777777777777766654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=8.6e-17 Score=149.84 Aligned_cols=270 Identities=11% Similarity=-0.061 Sum_probs=187.2
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
+...+..+...+.+.|++++|..+|+++.+..+ .+..+|..+...+.+.|++++|+..|++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a- 125 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-----------------GDAEAWQFLGITQAENENEQAAIVALQRC- 125 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 456688899999999999999999999998865 67788999999999999999999999996
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcc---hHHHHHHHHHhCchHHHHHHHhhhcCCcchHH
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV---MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYG 238 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~ 238 (462)
... .+.+..++..+..+|.+.|++++|...|++..+.++. .+..+. .....+.
T Consensus 126 ----l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------~~~~~~~ 181 (365)
T 4eqf_A 126 ----LEL-QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-------------------GSPGLTR 181 (365)
T ss_dssp ----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------
T ss_pred ----Hhc-CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-------------------cchHHHH
Confidence 332 2345778899999999999999999999887642211 111100 1123345
Q ss_pred HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 318 (462)
Q Consensus 239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (462)
.+...+.+.|++++|...++.+.+.... .++..+|..+...|.+.|++++|...|.+.+.
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----- 241 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGD---------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT----- 241 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCS---------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcC---------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 5677788889999999999998887521 12677888888889999999999999988432
Q ss_pred hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----
Q 036356 319 SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----- 390 (462)
Q Consensus 319 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----- 390 (462)
.. +.+..+|..+..+|.+.|++++|...|++..+ | +..+|..+...|...|++++|...|++..+. .|+
T Consensus 242 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 318 (365)
T 4eqf_A 242 VR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQ 318 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC----
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCc
Confidence 21 23456777777777777777777777776552 3 3556666777777777777777777776652 222
Q ss_pred --------HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 391 --------HQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 391 --------~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
...|..+..++...|+.+.|.++.++
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 319 QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 45566666666666776666666554
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=1.2e-16 Score=147.13 Aligned_cols=234 Identities=10% Similarity=-0.015 Sum_probs=72.5
Q ss_pred hCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc--hHHH
Q 036356 146 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE--WSAF 223 (462)
Q Consensus 146 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~--~~a~ 223 (462)
+.|++++|.++++++ ++..+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...| ++|.
T Consensus 15 ~~~~ld~A~~fae~~-----------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 667778888887774 2234777788888888888888877755 345556666666666666 6666
Q ss_pred HHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCCh
Q 036356 224 GSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYA 301 (462)
Q Consensus 224 ~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~ 301 (462)
..++...+ ++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------------------~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-----------------------GPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp ---------------------------CHHHHTTTTT-----------------------CC----------------CT
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------CCcHHHHHHHHHHHHHcCCH
Confidence 65554444 445556666666666666666665553 24555666666666666666
Q ss_pred hHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHH
Q 036356 302 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHH 381 (462)
Q Consensus 302 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 381 (462)
++|..+|.. + ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 139 eeA~~~Y~~-----a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 139 DAAKLLYNN-----V---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp TTHHHHHHH-----T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHH-----h---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 666666665 1 35666666666666666666666666 2566666666666666666666433332
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356 382 IRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP 436 (462)
Q Consensus 382 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~ 436 (462)
+...+.....++..|.+.|++++|..+++.. +..+ ....|+-|.-.|.+-
T Consensus 203 -----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 203 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp -----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred -----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 1122223345666666666666666666664 4333 334555554444444
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=2.8e-16 Score=146.34 Aligned_cols=266 Identities=12% Similarity=-0.027 Sum_probs=177.7
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHH
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGY 215 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 215 (462)
.|..+...+.+.|++++|++.|++. ... .+.+..+|..+..+|.+.|++++|+..|++..+.++
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~a-----l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------- 130 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAA-----ILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP---------- 130 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-----HHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------
Confidence 3455555555555555555555554 111 122344455555555555555555555544332110
Q ss_pred HhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356 216 GLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295 (462)
Q Consensus 216 ~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 295 (462)
.+..++..+..++.+.|++++|...++.+.+..... ...+..+ ......+..+...+
T Consensus 131 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~------~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 131 ----------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY-KYLVKNK------KGSPGLTRRMSKSP 187 (365)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HCC------------------------
T ss_pred ----------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc-hHHHhhh------ccchHHHHHHHHHH
Confidence 235567777788888899999999999888754110 0000000 01123345567889
Q ss_pred HcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCC
Q 036356 296 AKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGL 371 (462)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 371 (462)
.+.|++++|...|.+.+ .... .++..++..+...|.+.|++++|...|++..+ .+..+|..+..+|...|+
T Consensus 188 ~~~g~~~~A~~~~~~al-----~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAA-----HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp -CCHHHHHHHHHHHHHH-----HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHH-----HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999953 2222 22678899999999999999999999998763 467789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHcc
Q 036356 372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-------------RLSVRRALLSAWKIP 436 (462)
Q Consensus 372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~l~~~~~~~ 436 (462)
+++|...|++..+ ..|+ ..+|..+...|.+.|++++|.+.+++. .+.| +...|..+..++...
T Consensus 263 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (365)
T 4eqf_A 263 SEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340 (365)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence 9999999999998 5676 788999999999999999999999987 2122 367899999999999
Q ss_pred CChHHHHHHHH
Q 036356 437 MQQWENMLQTI 447 (462)
Q Consensus 437 ~~~~~a~~~~~ 447 (462)
|+.+.+.....
T Consensus 341 g~~~~a~~~~~ 351 (365)
T 4eqf_A 341 DQPELFQAANL 351 (365)
T ss_dssp TCHHHHHHHHT
T ss_pred CcHHHHHHHHH
Confidence 99987775554
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=3.8e-15 Score=136.10 Aligned_cols=272 Identities=10% Similarity=-0.045 Sum_probs=189.5
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
+...+......+...|++++|..+|+++.+..+ .+..+|..+...+...|++++|.+.|++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a- 81 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-----------------EREEAWRSLGLTQAENEKDGLAIIALNHA- 81 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 344566777777888888888888888887754 46677888888888888888888888886
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCC---cchHHHHHHHHHhCchHHHHHHHhhhcCCcchHH
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYG 238 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~ 238 (462)
... .+.+..++..+...|...|++++|...+++....+ ...+..+.... |+.....
T Consensus 82 ----~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 140 (327)
T 3cv0_A 82 ----RML-DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------VDIDDLN 140 (327)
T ss_dssp ----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------
T ss_pred ----Hhc-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------HHHHHHH
Confidence 222 23456777788888888888888888887765321 11121111100 1112222
Q ss_pred HH-HH-hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356 239 TA-LD-CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316 (462)
Q Consensus 239 ~l-l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 316 (462)
.+ .. .+...|++++|...++.+.+... .+...+..+...|.+.|++++|...+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~---- 199 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMNP-----------------NDAQLHASLGVLYNLSNNYDSAAANLRRAV---- 199 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhCC-----------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHH----
Confidence 22 22 37788999999999999988752 467888899999999999999999999843
Q ss_pred HhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---
Q 036356 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--- 390 (462)
Q Consensus 317 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--- 390 (462)
... +.+...+..+...|...|++++|...|++..+ .+..+|..+...|...|++++|.+.+++..+. .|+
T Consensus 200 -~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 275 (327)
T 3cv0_A 200 -ELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTT 275 (327)
T ss_dssp -HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC
T ss_pred -HhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCcccc
Confidence 221 23466777788888888888888888877652 34566777777888888888888888877763 343
Q ss_pred ----------HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 391 ----------HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 391 ----------~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
...|..+..++.+.|++++|..++++.
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 567777777888888888887777654
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=1.9e-15 Score=140.75 Aligned_cols=280 Identities=10% Similarity=-0.043 Sum_probs=156.8
Q ss_pred cCCCCccchh-hhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhc
Q 036356 22 ALPSLLMGPR-VHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSC 94 (462)
Q Consensus 22 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~ 94 (462)
..++++.|.. .++...+.... .+..+...+..+ +...|++++|+..|+++ .+.+..++..+..++.
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEE-------NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp ---------CHHHHCCCCCCSS-------CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCC-------CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455566665 55544433211 011133445444 99999999999999999 4456778999999999
Q ss_pred CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc
Q 036356 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV 174 (462)
Q Consensus 95 ~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 174 (462)
+.|++++|...++++.+..+ .+..++..+...+...|++++|.+.|++. .... +.+.
T Consensus 110 ~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~-~~~~ 166 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKP-----------------DNQTALMALAVSFTNESLQRQACEILRDW-----LRYT-PAYA 166 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHTS-TTTG
T ss_pred HCcCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhC-cCcH
Confidence 99999999999999999875 67888999999999999999999999997 3322 2222
Q ss_pred hHHHHH---------------HHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchH
Q 036356 175 IVNTVL---------------IDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEY 237 (462)
Q Consensus 175 ~~~~~l---------------i~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~ 237 (462)
..+..+ +..+...|++++|...|+++.+ |+. ++..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------------~~~~~~ 220 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--------------------------IDPDVQ 220 (368)
T ss_dssp GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS--------------------------CCHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc--------------------------ccHHHH
Confidence 222211 2222255555555555554431 110 013344
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317 (462)
Q Consensus 238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (462)
..+...+.+.|++++|...++.+.+.. +.+...|..+...+.+.|++++|...|.+.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---- 279 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-----------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE---- 279 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence 444445555555555555555554432 12344455555555555555555555554321
Q ss_pred hhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-C-----------ccchHHHHHHHHhcCChHHHHHHHH
Q 036356 318 KSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-D-----------VVMRSAMTVGYGLHGLGEEGWVLFH 380 (462)
Q Consensus 318 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-----------~~~~~~li~~~~~~~~~~~a~~~~~ 380 (462)
. .+.+...+..+..+|.+.|++++|...|++..+ | + ..+|..+..+|...|++++|..++.
T Consensus 280 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 280 -L-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp -H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred -h-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 1 123444455555555555555555555554431 1 1 2345555555555555555554443
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=2.9e-13 Score=131.17 Aligned_cols=343 Identities=10% Similarity=-0.025 Sum_probs=268.2
Q ss_pred Cceeehhh---hcc----CCChhhHHHHHHhh-cCCCcchHHHHHHhhcC----ccchhhHHHHHHHHHHhcCCcchhHH
Q 036356 54 TIVFLDLY---HLW----SRTEWSAFGSFDGL-LSNEENEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLELESDLL 121 (462)
Q Consensus 54 ~~~~~~~~---~~~----~~~~~~A~~~~~~m-~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~l 121 (462)
+...+..+ |.. .+++++|+..|++. ..-+...+..+...+.. .+++++|...|++..+.|.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------- 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL------- 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-------
Confidence 44444444 444 78999999999998 55667788888888877 8899999999999987654
Q ss_pred HHHhhhcCCCCCeeeHHHHHHHHHh----CCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh----cCCcccH
Q 036356 122 ISLTAVCRYQPNVTLRNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLA 193 (462)
Q Consensus 122 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 193 (462)
...+..|...|.. .+++++|++.|++- ...| +...+..|...|.. .++.++|
T Consensus 111 ------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-----~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 111 ------------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLA-----AEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp ------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-----HHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-----HHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 5566777778887 78999999999996 4444 46677778888887 7899999
Q ss_pred HHHhhccCC-CCcchHHHHHHHHHh----Cc--hHHHHHHHhhhc-CCcchHHHHHHhhcC----ccchhhhHHHHHHHH
Q 036356 194 PMFFDRTLD-KDVVMRSAMIVGYGL----HE--WSAFGSFDGLLS-NEENEYGTALDCSCD----LEFLEQGKIVHGFMI 261 (462)
Q Consensus 194 ~~~~~~m~~-~~~~~~~~li~~~~~----~~--~~a~~~~~~m~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~ 261 (462)
.+.|++..+ .+...+..+...|.. .+ ++|+.+|++... .+...+..+...+.. .++.++|...|+...
T Consensus 171 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 171 REWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999987653 466677777777775 44 999999998877 666677777777764 789999999999988
Q ss_pred HhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc----CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh
Q 036356 262 KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK 337 (462)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 337 (462)
+.| +...+..+-..|.. .++.++|...|++. .+.| +...+..+...|..
T Consensus 251 ~~~-------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a-----~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 251 EQG-------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS-----AEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp TTT-------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH-----HTTT---CHHHHHHHHHHHHH
T ss_pred HCC-------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-----HHcC---CHHHHHHHHHHHHc
Confidence 754 34556666666776 88999999999883 3333 45566677788887
Q ss_pred c-----CCcchHHHHhccCCC-CCccchHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----c
Q 036356 338 C-----GSVDLAPMFFDRTLD-KDVVMRSAMTVGYGLHG---LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR----A 404 (462)
Q Consensus 338 ~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 404 (462)
. ++.++|...|++..+ .+...+..|...|...| ++++|.+.|++..+.| +...+..|...|.. .
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 7 899999999988764 45567777888887766 7899999999999853 57788888888888 8
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhhhcC
Q 036356 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKI----PMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 405 g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 453 (462)
+++++|.+.+++.--..+...+..|...|.. .++.++|...+.+....+
T Consensus 381 ~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999988112357778888888887 899999999888877766
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=4.1e-14 Score=138.58 Aligned_cols=381 Identities=9% Similarity=-0.022 Sum_probs=266.0
Q ss_pred CCCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCCCc
Q 036356 9 NGCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSNEE 83 (462)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~~~ 83 (462)
|...|..++.. .+.|+++.|..+++.+++... .+...|... +.+.|++++|..+|++. ..|+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-----------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-----------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 44567778874 678999999999999998752 244556655 77889999999999999 55777
Q ss_pred chHHHHHHhh-cCccchhhHHH----HHHHHHHh-cCCcchhHHHHHhhhcCCCC-CeeeHHHHHHHHHh---------C
Q 036356 84 NEYGTALDCS-CDLEFLEQGKI----VHGFMIKL-GLELESDLLISLTAVCRYQP-NVTLRNAMISGYAK---------N 147 (462)
Q Consensus 84 ~~~~~ll~~~-~~~~~~~~a~~----~~~~m~~~-g~~~~~~~l~~~~~~~~~~p-~~~~~~~li~~~~~---------~ 147 (462)
..|...+... ...|+++.|.+ +|++.... |. .| +...|...+....+ .
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~----------------~~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM----------------EIMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT----------------STTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC----------------CcccHHHHHHHHHHHhcCCCcccHHHH
Confidence 7777776533 34567776665 77766543 54 33 45677777766554 6
Q ss_pred CChhHHHHHHHHhhhhhhhhcCCCCC---chHHHHHHHHH-------------HhcCCcccHHHHhhc-------cC---
Q 036356 148 GYAEEAVKLFPKWMDYYIGKSEYRNN---VIVNTVLIDMY-------------AKCGSVDLAPMFFDR-------TL--- 201 (462)
Q Consensus 148 g~~~~a~~~~~~m~~~~~~~~~~~~~---~~~~~~li~~~-------------~~~g~~~~a~~~~~~-------m~--- 201 (462)
|+++.|..+|++. .. . |+ ...|....... .+.++++.|..++.+ +.
T Consensus 144 ~~~~~a~~~y~~a-----l~--~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 144 QRITAVRRVYQRG-----CV--N-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp HHHHHHHHHHHHH-----TT--S-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred hHHHHHHHHHHHH-----Hh--c-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999996 33 2 32 23333322211 123456666655543 11
Q ss_pred ---CCC--------cchHHHHHHHHHhCc----------hHHHHHHHhhhc--C-CcchHHHHHHhhcC-------ccch
Q 036356 202 ---DKD--------VVMRSAMIVGYGLHE----------WSAFGSFDGLLS--N-EENEYGTALDCSCD-------LEFL 250 (462)
Q Consensus 202 ---~~~--------~~~~~~li~~~~~~~----------~~a~~~~~~m~~--~-~~~~~~~ll~~~~~-------~~~~ 250 (462)
.|+ ...|...+.....++ ..+..+|++... | +...|......+.+ .|++
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch
Confidence 122 134444443322221 267788888888 5 45566666666654 7888
Q ss_pred h-------hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356 251 E-------QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323 (462)
Q Consensus 251 ~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p 323 (462)
+ +|..+++...+.-. +.+...|..++..+.+.|++++|..+|++.+ . ..|
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~----------------p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al-----~--~~p 352 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLL----------------KKNMLLYFAYADYEESRMKYEKVHSIYNRLL-----A--IED 352 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTC----------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----H--SSS
T ss_pred hhhhhhhHHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----C--ccc
Confidence 7 89999998876211 2468889999999999999999999999953 3 345
Q ss_pred c--hhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHH---HHH-HHhcCChHHHHHHHHHHHHCCCCCC-HhHHHH
Q 036356 324 N--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM---TVG-YGLHGLGEEGWVLFHHIRKHGIEPR-HQHYAR 396 (462)
Q Consensus 324 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~-~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ 396 (462)
+ ...|..++..+.+.|++++|..+|++..+.+...+... ... +...|+.++|..+|++..+ ..|+ ...|..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~~~ 430 (530)
T 2ooe_A 353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLA 430 (530)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHHHH
T ss_pred cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHHHH
Confidence 4 24788889999999999999999998775322222222 212 3368999999999999988 4575 788999
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 397 VVDLLARAGYSNHAFKFIMNM----PIELR--LSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
++..+.+.|+.++|..+|++. +..|+ ...|...+......|+.+.+.....+++
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999998 23332 4488888998888999988876665543
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.60 E-value=3.9e-14 Score=127.05 Aligned_cols=241 Identities=10% Similarity=0.006 Sum_probs=138.8
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc-
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE- 219 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~- 219 (462)
+......|+++.|+..++.. ......+.......+.++|...|+++.|...++....|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~-----~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRV-----KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHS-----CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhc-----ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence 34556689999999998875 222222223355567889999999999998887754455555555555555555
Q ss_pred -hHHHHHHHhhhc----CCc-chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356 220 -WSAFGSFDGLLS----NEE-NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293 (462)
Q Consensus 220 -~~a~~~~~~m~~----~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 293 (462)
++|++.++++.. |+. ..+..+...+.+.|++++|.+.++. + .+...+..+..
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~----------------~~~~~~~~l~~ 138 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------G----------------DSLECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------C----------------CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------C----------------CCHHHHHHHHH
Confidence 666666666542 332 2333344555666666666666654 1 34555666666
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHH---HHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHH
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVN---TVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYG 367 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 367 (462)
.|.+.|++++|.+.|+++ .... |+.... ...+..+...|++++|..+|+++.+ .+...|+.+..++.
T Consensus 139 ~~~~~g~~~~A~~~l~~~-----~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKM-----QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHTTCHHHHHHHHHHH-----HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH-----HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 666666666666666663 2222 332111 1122333334566666666665542 24445566666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH-HHHHHHhC
Q 036356 368 LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH-AFKFIMNM 417 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~-A~~~~~~m 417 (462)
+.|++++|...|++..+ ..|+ ..++..++..+...|+.++ +.++++++
T Consensus 212 ~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666666666666665 4454 4556666666666666654 34555554
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=2e-14 Score=131.18 Aligned_cols=209 Identities=13% Similarity=0.084 Sum_probs=128.8
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|+.+|+++ .+.+..++..+..++.+.|++++|...++++.+..+ .+..++.
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~ 93 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----------------KDIAVHA 93 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----------------CCHHHHH
Confidence 88999999999999999 445677888999999999999999999999998865 5778899
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHH--------------HH-HHHhcCCcccHHHHhhccCC-
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL--------------ID-MYAKCGSVDLAPMFFDRTLD- 202 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~- 202 (462)
.+...+...|++++|.+.|++. .... +.+...+..+ .. .+...|++++|...+++..+
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAW-----LLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----HHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-----HHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999999999999999997 3322 2222233222 11 24455556666666655432
Q ss_pred --CCcchHHHHHHHHHhCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHH
Q 036356 203 --KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISL 275 (462)
Q Consensus 203 --~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (462)
.+...+..+...+...| ++|...+++... | +...+..+...+.+.|++++|...++.+.+..
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------- 236 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN----------- 236 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------
Confidence 23334444444444444 445555544444 2 23344444444444555555555554444432
Q ss_pred HHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 276 TAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 276 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
+.+...|..+...|.+.|++++|.+.|++
T Consensus 237 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 237 ------PGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 12334444444444555555555555444
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.59 E-value=5e-13 Score=129.55 Aligned_cols=325 Identities=10% Similarity=-0.028 Sum_probs=258.0
Q ss_pred CCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hcc----CCChhhHHHHHHhh-cCCCcchHHHHHHhhc
Q 036356 23 LPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLW----SRTEWSAFGSFDGL-LSNEENEYGTALDCSC 94 (462)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~A~~~~~~m-~~~~~~~~~~ll~~~~ 94 (462)
.++++.|...++...+.| +...+..+ |.. .+++++|+..|++. ...+...+..+...+.
T Consensus 56 ~~~~~~A~~~~~~a~~~~-------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 122 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG-------------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYH 122 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677778888888877665 33444444 666 88999999999999 5556777888888877
Q ss_pred C----ccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHh----CCChhHHHHHHHHhhhhhhh
Q 036356 95 D----LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK----NGYAEEAVKLFPKWMDYYIG 166 (462)
Q Consensus 95 ~----~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~ 166 (462)
. .+++++|...|++..+.|. ...+..|...|.. .++.++|++.|++. .
T Consensus 123 ~g~g~~~~~~~A~~~~~~a~~~~~-------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a-----~ 178 (490)
T 2xm6_A 123 EGNGVKVDKAESVKWFRLAAEQGR-------------------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKA-----A 178 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-----H
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-----H
Confidence 6 7899999999999988654 5567777777877 78999999999996 4
Q ss_pred hcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccCC-CCcchHHHHHHHHHh----Cc--hHHHHHHHhhhc-CCc
Q 036356 167 KSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD-KDVVMRSAMIVGYGL----HE--WSAFGSFDGLLS-NEE 234 (462)
Q Consensus 167 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~--~~a~~~~~~m~~-~~~ 234 (462)
+.| +...+..+...|.. .++.++|..+|++..+ .+...+..+...|.. .+ ++|..+|++... .+.
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 443 67788888889988 8999999999987654 455667777777764 33 999999999887 566
Q ss_pred chHHHHHHhhcC----ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcC-----CChhHHH
Q 036356 235 NEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKN-----GYAEEAV 305 (462)
Q Consensus 235 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~ 305 (462)
..+..+-..+.. .++.++|...|+...+.| +...+..+-..|... ++.++|.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-------------------~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-------------------NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-------------------CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 666667666665 899999999999988754 445666677777776 8999999
Q ss_pred HHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcC---CcchHHHHhccCCC-CCccchHHHHHHHHh----cCChHHHHH
Q 036356 306 KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG---SVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGEEGWV 377 (462)
Q Consensus 306 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~ 377 (462)
..|.+. .+.+ +...+..+...|.+.| +.++|..+|++..+ .+...+..|...|.. .+++++|.+
T Consensus 317 ~~~~~a-----~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 317 SWYTKS-----AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHH-----HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHH-----HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999984 3433 3456777777887766 78899999988764 567788889999988 899999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036356 378 LFHHIRKHGIEPRHQHYARVVDLLAR----AGYSNHAFKFIMNM 417 (462)
Q Consensus 378 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 417 (462)
.|++..+.| +...+..|...|.. .+++++|.+.|++.
T Consensus 389 ~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 389 WMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999865 46788888888988 89999999999998
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=1.4e-12 Score=133.94 Aligned_cols=322 Identities=12% Similarity=0.015 Sum_probs=200.0
Q ss_pred CCceeehhh-hccCCChhhHHHHHHhh-cCC-----CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHh
Q 036356 53 RTIVFLDLY-HLWSRTEWSAFGSFDGL-LSN-----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLT 125 (462)
Q Consensus 53 ~~~~~~~~~-~~~~~~~~~A~~~~~~m-~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~ 125 (462)
|+.++...- |...|.+.+|++++++. ..| +....+.++.+..+. +..+..++.+++..
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------------- 1049 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------------- 1049 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------------
Confidence 555555555 88888999999999888 222 335566677666666 55666666655442
Q ss_pred hhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCc
Q 036356 126 AVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDV 205 (462)
Q Consensus 126 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 205 (462)
....-+...+...|.+++|..+|++. .-.....+.++. ..+++++|.++.++... .
T Consensus 1050 ---------~d~~eIA~Iai~lglyEEAf~IYkKa----------~~~~~A~~VLie---~i~nldrAiE~Aervn~--p 1105 (1630)
T 1xi4_A 1050 ---------YDAPDIANIAISNELFEEAFAIFRKF----------DVNTSAVQVLIE---HIGNLDRAYEFAERCNE--P 1105 (1630)
T ss_pred ---------ccHHHHHHHHHhCCCHHHHHHHHHHc----------CCHHHHHHHHHH---HHhhHHHHHHHHHhcCC--H
Confidence 22344777888899999999999883 111222233322 67888898888887643 5
Q ss_pred chHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHh-----
Q 036356 206 VMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAV----- 278 (462)
Q Consensus 206 ~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----- 278 (462)
.+|..+-.++...| ++|++.|.+. .|...|..++.+|.+.|++++|.+.+....+..-.+...+.....-+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCH
Confidence 67888888888888 8888888665 67777888889999999999999998877765422111111000000
Q ss_pred -----hcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC
Q 036356 279 -----CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 353 (462)
Q Consensus 279 -----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 353 (462)
+-..++...|..+...|...|++++|..+|.. ...|..+...|.+.|++++|.+.+++.
T Consensus 1184 eele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k--------------A~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1184 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN--------------VSNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--------------hhHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence 00234444455555555556666666666554 125555666666666666666666544
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036356 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLS 431 (462)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~ 431 (462)
.+..+|..+-.+|...|++..|...... +..+...+..++.-|.+.|.+++|+++++.. ++.|. ...|+-|..
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 3345555556666666665555544332 2234556667777788888888888888665 54443 235544555
Q ss_pred HHHcc
Q 036356 432 AWKIP 436 (462)
Q Consensus 432 ~~~~~ 436 (462)
.|.+.
T Consensus 1323 LyaKy 1327 (1630)
T 1xi4_A 1323 LYSKF 1327 (1630)
T ss_pred HHHhC
Confidence 54444
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=2.1e-12 Score=126.45 Aligned_cols=353 Identities=8% Similarity=0.005 Sum_probs=245.5
Q ss_pred Cceeehhh--hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhc
Q 036356 54 TIVFLDLY--HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 128 (462)
Q Consensus 54 ~~~~~~~~--~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~ 128 (462)
|...|..+ +.+.|++++|..+|+.+ .+.+...|...+..+.+.|+++.|..+|+++.+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---------------- 75 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---------------- 75 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----------------
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------
Confidence 55677666 77789999999999999 4556678999999999999999999999999876
Q ss_pred CCCCCeeeHHHHHHH-HHhCCChhHHHH----HHHHhhhhhhhhcCCCC-CchHHHHHHHHHHh---------cCCcccH
Q 036356 129 RYQPNVTLRNAMISG-YAKNGYAEEAVK----LFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAK---------CGSVDLA 193 (462)
Q Consensus 129 ~~~p~~~~~~~li~~-~~~~g~~~~a~~----~~~~m~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~a 193 (462)
.|+...|...+.. ....|+.++|.+ +|+.. ....|..| +...|...+....+ .|+++.|
T Consensus 76 --~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~a----l~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 76 --VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFA----LDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHH----HHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHH----HHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 4676677777653 345788887766 66654 23345554 45677777776655 6889999
Q ss_pred HHHhhccCC-CCc---chHHHHHH---HH--------H--hCc--hHHHHHHHhhhc-------------CCc-------
Q 036356 194 PMFFDRTLD-KDV---VMRSAMIV---GY--------G--LHE--WSAFGSFDGLLS-------------NEE------- 234 (462)
Q Consensus 194 ~~~~~~m~~-~~~---~~~~~li~---~~--------~--~~~--~~a~~~~~~m~~-------------~~~------- 234 (462)
..+|++..+ |+. ..|..... .+ . ..+ ..|..++++... |+.
T Consensus 150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 999998764 321 22222111 00 0 111 455555544211 111
Q ss_pred -chHHHHHHhhcC----ccch----hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc-------C
Q 036356 235 -NEYGTALDCSCD----LEFL----EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK-------N 298 (462)
Q Consensus 235 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~-------~ 298 (462)
..|...+..... .++. +.+..+|+..++.. +.+...|......+.+ .
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-----------------p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-----------------GHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHhchhhhhc
Confidence 223332221111 1122 24556666666642 2467788888888775 7
Q ss_pred CChh-------HHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCc--cchHHHHHHH
Q 036356 299 GYAE-------EAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDV--VMRSAMTVGY 366 (462)
Q Consensus 299 ~~~~-------~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~ 366 (462)
|+++ +|..+|++.+ . .+.| +...|..++..+.+.|++++|..+|++..+ |+. ..|..++..+
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al-----~-~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAI-----S-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA 366 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT-----T-TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHH-----H-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHH
Confidence 9987 8999998832 2 2344 578899999999999999999999998763 432 4788888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHH
Q 036356 367 GLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL-LARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWEN 442 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a 442 (462)
.+.|++++|.++|++..+ ..|+ ...|...... +...|++++|..+|+.. ...| +...|..++..+...|+.++|
T Consensus 367 ~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhH
Confidence 999999999999999998 3444 3333332222 34689999999999987 3334 578999999999999999999
Q ss_pred HHHHHhhhhcC
Q 036356 443 MLQTIRGIDEG 453 (462)
Q Consensus 443 ~~~~~~~~~~~ 453 (462)
...+.+.+..+
T Consensus 445 r~~~~~al~~~ 455 (530)
T 2ooe_A 445 RVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhcc
Confidence 98888877653
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.55 E-value=5.7e-13 Score=119.48 Aligned_cols=241 Identities=9% Similarity=-0.036 Sum_probs=190.8
Q ss_pred HHHHhcCCcccHHHHhhccCCCCc----chHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHH
Q 036356 182 DMYAKCGSVDLAPMFFDRTLDKDV----VMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKI 255 (462)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~ 255 (462)
+-....|++..|+..+++....++ .....+.++|...| +.|+..++....|+..++..+...+.+.++.++|.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 345568999999999988765432 23455678898888 889988876533777888899999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHH
Q 036356 256 VHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 335 (462)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 335 (462)
.++.+...+..| -+...+..+...+.+.|++++|++.+.+ ..+...+..+...|
T Consensus 87 ~l~~ll~~~~~P---------------~~~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 87 ELDREMSRSVDV---------------TNTTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHSCCCC---------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHH
T ss_pred HHHHHHhcccCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHH
Confidence 999999876431 2456667777899999999999999875 35678899999999
Q ss_pred HhcCCcchHHHHhccCCC--CCccchHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHH
Q 036356 336 AKCGSVDLAPMFFDRTLD--KDVVMRSAM----TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNH 409 (462)
Q Consensus 336 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 409 (462)
.+.|++++|.+.|+++.+ |+.. ...+ +..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999874 5432 2233 33344558999999999999985 33458899999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHH-HHHHhhh
Q 036356 410 AFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENM-LQTIRGI 450 (462)
Q Consensus 410 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 450 (462)
|.+.+++. ...| +..++..++..+...|+..++. ..+.+.+
T Consensus 219 A~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999997 4445 6778999999999999997754 4444443
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.55 E-value=2.1e-12 Score=132.66 Aligned_cols=358 Identities=9% Similarity=0.026 Sum_probs=253.6
Q ss_pred ChHHHHHhhccCCCCccchhhhHhHhhhCchh-------------------hhhhhcCCCCCceeehhh---hccCCChh
Q 036356 12 TPPLVLKACVALPSLLMGPRVHGQIFSLGFLV-------------------CYLFDGLFDRTIVFLDLY---HLWSRTEW 69 (462)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~ 69 (462)
--+...++|...|...+|.+++++..-.+-.- .++.+-....+......+ +...|.++
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHH
Confidence 34677888999999999999999998443200 111111111111112222 55566666
Q ss_pred hHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCC
Q 036356 70 SAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY 149 (462)
Q Consensus 70 ~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~ 149 (462)
+|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++.+.|+
T Consensus 1067 EAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv----------------------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1067 EAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC----------------------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc----------------------CCHHHHHHHHHHHHhCCC
Confidence 6666666542 11111122222 345556655555522 356788899999999999
Q ss_pred hhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--CCcchHHHHHHHHHhCc-hHHHHHH
Q 036356 150 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMIVGYGLHE-WSAFGSF 226 (462)
Q Consensus 150 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~-~~a~~~~ 226 (462)
+++|+..|.+ .-|...|..++.++.+.|++++|.++|....+ ++....+.+..+|++.+ -++++-|
T Consensus 1121 ~kEAIdsYiK-----------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIK-----------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred HHHHHHHHHh-----------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH
Confidence 9999999966 25677888899999999999999999976442 34334455888888887 3344444
Q ss_pred HhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHH
Q 036356 227 DGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVK 306 (462)
Q Consensus 227 ~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 306 (462)
- ..++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+
T Consensus 1190 I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------------------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1190 I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------------------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------------------hHHHHHHHHHHHhCCHHHHHH
Confidence 2 2377778888999999999999999999864 358899999999999999999
Q ss_pred HhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356 307 LFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386 (462)
Q Consensus 307 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 386 (462)
.+++. .+..+|.-+-.+|...|++..|...... ...+...+..++..|.+.|.+++|+.+++....
T Consensus 1243 aarKA-----------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~-- 1308 (1630)
T 1xi4_A 1243 GARKA-----------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG-- 1308 (1630)
T ss_pred HHHHh-----------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--
Confidence 99872 4568898888999999999999988775 334555677899999999999999999977775
Q ss_pred CCCC-HhHHHHHHHHHHhc--CChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHccCChHHHHHHHH
Q 036356 387 IEPR-HQHYARVVDLLARA--GYSNHAFKFIMNM-PIEL------RLSVRRALLSAWKIPMQQWENMLQTI 447 (462)
Q Consensus 387 ~~p~-~~~~~~li~~~~~~--g~~~~A~~~~~~m-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~ 447 (462)
+.|. ...|+-|...|++. ++..++.++|..- .+.| +...|.-++--|.+.|+++.|+..+.
T Consensus 1309 LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1309 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5554 45666666666664 4566666666554 4444 46689999999999999999985443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.7e-12 Score=125.06 Aligned_cols=340 Identities=12% Similarity=0.002 Sum_probs=217.6
Q ss_pred CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCC-CeeeHHHHHHHHHhCCChhHHHHHHHH
Q 036356 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLRNAMISGYAKNGYAEEAVKLFPK 159 (462)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 159 (462)
.....||.+...+...|+.++|.+.|++..+.-.....+ . ..| ...+|+.+..+|...|++++|...+++
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~--------~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD--------Q-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG--------G-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc--------c-cchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 345579999999999999999999999876531000000 0 023 346799999999999999999999988
Q ss_pred hhhhhhhhcC-CCC-CchHHHHHHHHHHhc--CCcccHHHHhhccCC--C-CcchHHHHHHHHH---hCc--hHHHHHHH
Q 036356 160 WMDYYIGKSE-YRN-NVIVNTVLIDMYAKC--GSVDLAPMFFDRTLD--K-DVVMRSAMIVGYG---LHE--WSAFGSFD 227 (462)
Q Consensus 160 m~~~~~~~~~-~~~-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~---~~~--~~a~~~~~ 227 (462)
.....-...+ ..+ ...++..+..++.+. +++++|+..|++..+ | +...+..+..++. ..+ ++|++.++
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 6211000011 122 235666666566554 568999999998653 4 3444444444432 333 78888888
Q ss_pred hhhc--CC-cchHHHHHHh----hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC
Q 036356 228 GLLS--NE-ENEYGTALDC----SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300 (462)
Q Consensus 228 ~m~~--~~-~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 300 (462)
+..+ |+ ...+..+... ....+++++|.+.++...+... .+...+..+...|.+.|+
T Consensus 200 ~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-----------------~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-----------------GVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-----------------SCHHHHHHHHHHHHHTTC
T ss_pred HHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-----------------cHHHHHHHHHHHHHHcCc
Confidence 8777 54 3444444333 3456788999999999888752 567789999999999999
Q ss_pred hhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhc-------------------CCcchHHHHhccCC---CCCcc
Q 036356 301 AEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKC-------------------GSVDLAPMFFDRTL---DKDVV 357 (462)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~---~~~~~ 357 (462)
+++|...+.+.+ +. .| +..++..+...|... +..+.|...|+... ..+..
T Consensus 263 ~~~A~~~~~~al-----~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 335 (472)
T 4g1t_A 263 PDKAIELLKKAL-----EY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335 (472)
T ss_dssp HHHHHHHHHHHH-----HH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred hHHHHHHHHHHH-----Hh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh
Confidence 999999999853 22 34 355666665555322 22456666666554 34677
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--hHHHHHHH-HHHhcCChHHHHHHHHhC-CC--------------
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH--QHYARVVD-LLARAGYSNHAFKFIMNM-PI-------------- 419 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~-------------- 419 (462)
++..+...|...|++++|.+.|++..+....|.. ..+..+.. .+...|++++|+..+++. .+
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l 415 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 8899999999999999999999999984433322 12333332 345679999999888765 22
Q ss_pred -----------CCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356 420 -----------ELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 420 -----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
+.+..+|..|...|...|+.++|+..+.+.++.|
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2345688999999999999999999998887754
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=9.5e-13 Score=126.88 Aligned_cols=361 Identities=10% Similarity=-0.101 Sum_probs=222.0
Q ss_pred CCChHHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh-------c
Q 036356 10 GCTPPLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL-------L 79 (462)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m-------~ 79 (462)
...|+.|-..+...|+.++|.+.+++..+..... .-.........+|+.+ |...|++++|+..+++. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~--~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE--HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 4458888889999999999999999876542110 0000111234567666 88999999999999887 1
Q ss_pred ---CC-CcchHHHHHHhhc--CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH---HHhCCCh
Q 036356 80 ---SN-EENEYGTALDCSC--DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG---YAKNGYA 150 (462)
Q Consensus 80 ---~~-~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~---~~~~g~~ 150 (462)
.+ ...++.....++. ..+++++|...|++..+..+ -+...+..+..+ +...++.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-----------------~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-----------------KNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHHHHSCCC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHhcCchHH
Confidence 11 1234555444443 34679999999999998764 344455544444 4567888
Q ss_pred hHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccC---CCCcchHHHHHHHHHhCc--hH
Q 036356 151 EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTL---DKDVVMRSAMIVGYGLHE--WS 221 (462)
Q Consensus 151 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~--~~ 221 (462)
++|++.|++. .+. -+.+..++..+...+.. .|++++|.+.+++.. ..+...+..+...|...| ++
T Consensus 192 ~~al~~~~~a-----l~l-~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 192 QNAIDPLRQA-----IRL-NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp CCTHHHHHHH-----HHH-CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH-----hhc-CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHH
Confidence 8999988874 222 12345556555555554 467889999998754 345567788888888888 99
Q ss_pred HHHHHHhhhc--CCc-chHHHHHHhhcC-------------------ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhh
Q 036356 222 AFGSFDGLLS--NEE-NEYGTALDCSCD-------------------LEFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279 (462)
Q Consensus 222 a~~~~~~m~~--~~~-~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (462)
|...|++..+ |+. .++..+..++.. .+..+.|...++...+..
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------- 330 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--------------- 330 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---------------
Confidence 9999999888 554 445544444422 123556666676666654
Q ss_pred cCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch--hHHHHHHH-HHHhcCCcchHHHHhccCCCCCc
Q 036356 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV--IVNTVLID-MYAKCGSVDLAPMFFDRTLDKDV 356 (462)
Q Consensus 280 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~ 356 (462)
+.+...+..+...|...|++++|+..|++.+ .....+.. ..+..+.. .+...|+.++|...|++..+-+.
T Consensus 331 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 331 --DNLFRVCSILASLHALADQYEEAEYYFQKEF-----SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp --TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred --CchhhhhhhHHHHHHHhccHHHHHHHHHHHH-----hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 2466778889999999999999999999843 33322221 12222222 23467899999999987653222
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHH
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM----PIELRLSVR 426 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~ 426 (462)
.++. ..+..+.+.++++.... ..|+ ..+|..+...|...|++++|++.|++. +..|+..+|
T Consensus 404 ~~~~-------~~~~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 404 KSRE-------KEKMKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CCHH-------HHHHHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ccHH-------HHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2221 11223444555665555 3454 789999999999999999999999997 344555544
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.1e-12 Score=123.50 Aligned_cols=307 Identities=12% Similarity=0.000 Sum_probs=214.9
Q ss_pred cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC----eeeHHHHHHHHHhCCChhHHHHHHH
Q 036356 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN----VTLRNAMISGYAKNGYAEEAVKLFP 158 (462)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~ 158 (462)
...+......+...|++++|...|++..+.+. .+ ..+|..+...+...|++++|...|+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 71 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT-----------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-----------------ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33456677788889999999999999998754 23 3568888899999999999999998
Q ss_pred HhhhhhhhhcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc--CCcc
Q 036356 159 KWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEEN 235 (462)
Q Consensus 159 ~m~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~--~~~~ 235 (462)
+.... ....+..| ...++..+...|...|++++|...+++..+. ...... ....
T Consensus 72 ~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------~~~~~~~~~~~~ 128 (406)
T 3sf4_A 72 HDLTL-ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI----------------------SRELNDKVGEAR 128 (406)
T ss_dssp HHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHHTCHHHHHH
T ss_pred HHHHH-HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------HHhcccccchHH
Confidence 86210 11122222 2557788888899999999999888765421 000000 0122
Q ss_pred hHHHHHHhhcCccc--------------------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356 236 EYGTALDCSCDLEF--------------------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295 (462)
Q Consensus 236 ~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 295 (462)
++..+...+...|+ +++|...+....+..-..+. ......++..+...|
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD-----------RAAQGRAFGNLGNTH 197 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHHH
Confidence 45566666777777 88888888776553111000 001245688888899
Q ss_pred HcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----ccchHHHHHH
Q 036356 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----VVMRSAMTVG 365 (462)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 365 (462)
...|++++|...+.+.+...- ..+..+ ...++..+...|...|++++|...+++..+ ++ ..++..+...
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 999999999999998764211 111111 244788889999999999999999987652 11 4577888999
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 036356 366 YGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIEL-RLSVRRALLSA 432 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~ 432 (462)
|...|++++|.+.+++..+. +-.+. ..++..+...|...|++++|.+.+++. +..+ ...++..+...
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 356 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDL 356 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 99999999999999988764 11222 567888999999999999999998886 2112 24467778888
Q ss_pred HHccCChHH
Q 036356 433 WKIPMQQWE 441 (462)
Q Consensus 433 ~~~~~~~~~ 441 (462)
+...|+...
T Consensus 357 ~~~~g~~~~ 365 (406)
T 3sf4_A 357 QMVLGLSYS 365 (406)
T ss_dssp HHHHHTTSC
T ss_pred HHHhhHhHH
Confidence 888777644
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4.8e-12 Score=111.07 Aligned_cols=221 Identities=10% Similarity=-0.053 Sum_probs=154.1
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcc---hHHHH
Q 036356 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVV---MRSAM 211 (462)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~l 211 (462)
..|..+...+...|++++|+..|++. .... .+..++..+..+|...|++++|...+++..+.+.. .+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~- 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKA-----WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV- 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH-----HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-
Confidence 45777888999999999999999997 4555 77889999999999999999999999876531110 0000
Q ss_pred HHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH
Q 036356 212 IVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM 291 (462)
Q Consensus 212 i~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 291 (462)
....+..+..++.+.|++++|...++...+.. |+.
T Consensus 78 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~------ 112 (258)
T 3uq3_A 78 ---------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH------------------RTA------ 112 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CCH------
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------------------chh------
Confidence 02344555666666777777777777776643 332
Q ss_pred HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHh
Q 036356 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGL 368 (462)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 368 (462)
..+.+.|++++|...+.+.+ .. .+.+...+..+...+...|++++|...|++..+ .+..+|..+...|..
T Consensus 113 -~~~~~~~~~~~a~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 113 -DILTKLRNAEKELKKAEAEA-----YV-NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 185 (258)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH-----HC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHhHHHHHHHHHHHHH-----Hc-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 23445566777777776632 11 112345666667777777777777777776652 345667777888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.|++++|...+++..+ ..|+ ...|..+...+.+.|++++|.+.+++.
T Consensus 186 ~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888888888877 4455 667778888888888888888888776
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=3.1e-12 Score=113.56 Aligned_cols=249 Identities=10% Similarity=-0.101 Sum_probs=158.1
Q ss_pred hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCC
Q 036356 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR 171 (462)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 171 (462)
.....|++++|...++++.+... ..+ ..+..+|..+...+...|++++|...|++. ... .+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~--~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-----l~~-~~ 74 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRA--LTD-----------DERAQLLYERGVLYDSLGLRALARNDFSQA-----LAI-RP 74 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSC--CCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHH-CC
T ss_pred ccCccchHHHHHHHHHHHHhccc--ccC-----------chhHHHHHHHHHHHHHcccHHHHHHHHHHH-----HHc-CC
Confidence 34566888999999998887632 000 124567888888899999999999999886 332 23
Q ss_pred CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchh
Q 036356 172 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251 (462)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~ 251 (462)
.+..+|..+...|...|++++|...|++..+.++ .+...+..+..++.+.|+++
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------------------~~~~~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--------------------------TYNYAHLNRGIALYYGGRDK 128 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCTHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--------------------------cccHHHHHHHHHHHHhccHH
Confidence 3577888888889999999998888887653111 12334455555666667777
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHH
Q 036356 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 331 (462)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l 331 (462)
+|...++.+.+.. |+.......+..+...|++++|...+.+.+ .. ..++...+. +
T Consensus 129 ~A~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~-~~~~~~~~~-~ 183 (275)
T 1xnf_A 129 LAQDDLLAFYQDD------------------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF-----EK-SDKEQWGWN-I 183 (275)
T ss_dssp HHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH-----HH-SCCCSTHHH-H
T ss_pred HHHHHHHHHHHhC------------------CCChHHHHHHHHHHHhcCHHHHHHHHHHHH-----hc-CCcchHHHH-H
Confidence 7777777776643 333333334444455577777777776632 21 122333333 5
Q ss_pred HHHHHhcCCcchHHHHhccCCCCC-------ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 036356 332 IDMYAKCGSVDLAPMFFDRTLDKD-------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA 404 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 404 (462)
+..+...++.++|...++...+.+ ..+|..+...|...|++++|...|++..+ ..|+. +.....++...
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~~~~~~~~l 259 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN--FVEHRYALLEL 259 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--CHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--HHHHHHHHHHH
Confidence 555666666677777777665321 35677778888888888888888888877 45642 22234566677
Q ss_pred CChHHHHHHH
Q 036356 405 GYSNHAFKFI 414 (462)
Q Consensus 405 g~~~~A~~~~ 414 (462)
|++++|++.+
T Consensus 260 ~~~~~a~~~~ 269 (275)
T 1xnf_A 260 SLLGQDQDDL 269 (275)
T ss_dssp HHHHHC----
T ss_pred HHHHhhHHHH
Confidence 7777777654
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=5.7e-11 Score=113.49 Aligned_cols=366 Identities=10% Similarity=0.030 Sum_probs=234.2
Q ss_pred HHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCCh---hhHHHHHHhhcCCCcchHH
Q 036356 14 PLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTE---WSAFGSFDGLLSNEENEYG 87 (462)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~A~~~~~~m~~~~~~~~~ 87 (462)
..+-..+.+.|++++|..+|+...+.| +...+..+ +...|++ ++|+..|+.....+...+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~ 73 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-------------CCTGGGTCC----------------------------CHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHH
Confidence 335566678899999999999998876 33344444 6667888 8999999999333777777
Q ss_pred HHHHhhcCcc-----chhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhh
Q 036356 88 TALDCSCDLE-----FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD 162 (462)
Q Consensus 88 ~ll~~~~~~~-----~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (462)
.+...+...+ ++++|...|++..+.|. ++ .+..|...|...+..+.+.+.++.+
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-----------------~~--A~~~Lg~~y~~~~~~~~~~~a~~~~-- 132 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGE-----------------GN--TLIPLAMLYLQYPHSFPNVNAQQQI-- 132 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-----------------SS--CHHHHHHHHHHCGGGCTTCCHHHHH--
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-----------------HH--HHHHHHHHHHhCCCCCCCHHHHHHH--
Confidence 7777454443 88999999999998776 33 7777888888776655544444443
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHhcCCcccHH----HHhhccCCCCcchHHHHHHHHHhCc-----hHHHHHHHhhhc--
Q 036356 163 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP----MFFDRTLDKDVVMRSAMIVGYGLHE-----WSAFGSFDGLLS-- 231 (462)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~m~~~~~~~~~~li~~~~~~~-----~~a~~~~~~m~~-- 231 (462)
....-..+...+..|...|...+.++++. .+++.....+...+..+-..|...| ++|+..|++...
T Consensus 133 ---~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 133 ---SQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp ---HHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 11111223566677888888888655544 4555555666668888888887776 788888888877
Q ss_pred -CCcchHHHHHHhhcCc----cchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHH-H--HcCCChhH
Q 036356 232 -NEENEYGTALDCSCDL----EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG-Y--AKNGYAEE 303 (462)
Q Consensus 232 -~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~-~--~~~~~~~~ 303 (462)
++...+..+...|... ++.++|...|+... .| +...+..+-.. | ...++.++
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-------------------~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-------------------YPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-------------------STHHHHHHHHHHHHSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-------------------CHHHHHHHHHHHHhCCCCCCHHH
Confidence 3344336666777655 78999999999987 43 34445555555 3 46899999
Q ss_pred HHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcC-----CcchHHHHhccCCCCCccchHHHHHHHHh----cCChHH
Q 036356 304 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG-----SVDLAPMFFDRTLDKDVVMRSAMTVGYGL----HGLGEE 374 (462)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~ 374 (462)
|...|.+ ..+.| +...+..|...|. .| +.++|...|++....+...+..|...|.. ..++++
T Consensus 270 A~~~~~~-----Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 270 MMKYLDN-----GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHH-----HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHH-----HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 9999998 44455 5666777777776 55 89999999998883356667777777766 348999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 375 GWVLFHHIRKHGIEPRHQHYARVVDLLAR----AGYSNHAFKFIMNM-P-IELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
|.++|++..+.|. ......|...|.. ..++++|..+++.. . -.++.......+......++..+|.....+
T Consensus 341 A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 341 ALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998764 3445556666654 45899999999987 2 123333333333333344455555555544
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=5.8e-11 Score=103.88 Aligned_cols=194 Identities=9% Similarity=-0.101 Sum_probs=163.1
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|.+.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~- 98 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------------PSSADAHAALAVVFQTEMEPKLADEEYRKAL- 98 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 3456677788889999999999999998874 2467889999999999999999999999853
Q ss_pred HHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD----K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388 (462)
Q Consensus 314 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 388 (462)
... +.+...+..+...|...|++++|..+|+++.+ | +...+..+...+...|++++|.+.+++..+ ..
T Consensus 99 ----~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~ 171 (252)
T 2ho1_A 99 ----ASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LN 171 (252)
T ss_dssp ----HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred ----HHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 222 23577888899999999999999999998765 2 345677888999999999999999999988 44
Q ss_pred CC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 389 PR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIE-LRLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 389 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
|+ ...+..+...+...|++++|...+++. ... .+...+..+...+...|+.++|...+.+....
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 54 788999999999999999999999998 433 46778889999999999999999888777654
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.37 E-value=2.7e-11 Score=106.02 Aligned_cols=204 Identities=9% Similarity=-0.082 Sum_probs=152.4
Q ss_pred chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhh
Q 036356 174 VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQG 253 (462)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a 253 (462)
...+..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------------------------~~~~~~~~la~~~~~~~~~~~A 90 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--------------------------SSADAHAALAVVFQTEMEPKLA 90 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------------------------ChHHHHHHHHHHHHHcCCHHHH
Confidence 45566666777777777777777766542111 2334556666777788899999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHH
Q 036356 254 KIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLI 332 (462)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li 332 (462)
.+.++.+.+... .+...|..+...|...|++++|.+.|.+. ...+..| +...+..+.
T Consensus 91 ~~~~~~a~~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 91 DEEYRKALASDS-----------------RNARVLNNYGGFLYEQKRYEEAYQRLLEA-----SQDTLYPERSRVFENLG 148 (252)
T ss_dssp HHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TTCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHCc-----------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HhCccCcccHHHHHHHH
Confidence 999988887642 46778888888899999999999999884 2323344 466778888
Q ss_pred HHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChH
Q 036356 333 DMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSN 408 (462)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 408 (462)
..|...|++++|...|++..+ .+...+..+...|...|++++|...+++..+ ..|+ ...+..+...+...|+++
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHH
Confidence 889999999999999987763 3566788888999999999999999999887 4444 677888888999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHH
Q 036356 409 HAFKFIMNM-PIELRLSVRR 427 (462)
Q Consensus 409 ~A~~~~~~m-~~~p~~~~~~ 427 (462)
+|.+.++++ ...|+...+.
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 999999887 4445544433
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=6.6e-12 Score=114.62 Aligned_cols=282 Identities=12% Similarity=0.007 Sum_probs=168.9
Q ss_pred hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCC----eeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN----VTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.+......+...|++++|...++++.+... .+ ...+..+...+...|++++|.+.+++.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-----------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 69 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-----------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556777889999999999999998754 23 357888899999999999999999886
Q ss_pred hhhhhhhcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc--CCcchH
Q 036356 161 MDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEY 237 (462)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~--~~~~~~ 237 (462)
... ....+..| ...++..+...|...|++++|...+++..+. ...... ....++
T Consensus 70 l~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------------~~~~~~~~~~~~~~ 126 (338)
T 3ro2_A 70 LTL-ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI----------------------SRELNDKVGEARAL 126 (338)
T ss_dssp HHH-HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHTTCHHHHHHHH
T ss_pred HHH-hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------------------HHHhcCchHHHHHH
Confidence 211 11122222 3567788888999999999999988765421 000000 001244
Q ss_pred HHHHHhhcCccc--------------------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc
Q 036356 238 GTALDCSCDLEF--------------------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK 297 (462)
Q Consensus 238 ~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~ 297 (462)
..+...+...|+ +++|...++...+.....+. .......+..+...+..
T Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 127 YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-----------RAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHH
Confidence 556666667777 78888877776543110000 00124467778888899
Q ss_pred CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----ccchHHHHHHHHh
Q 036356 298 NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----VVMRSAMTVGYGL 368 (462)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~ 368 (462)
.|++++|...+.+.+...-..........++..+...|...|++++|...+++..+ .+ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99999999999886542111111111133556666666667777776666665431 11 2344455555555
Q ss_pred cCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 369 HGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.|++++|...+++..+. +-.+. ..++..+...|.+.|++++|.+.+++.
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56666665555554442 11111 224445555555555555555555543
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.37 E-value=1.3e-11 Score=105.62 Aligned_cols=191 Identities=12% Similarity=-0.005 Sum_probs=145.5
Q ss_pred CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312 (462)
Q Consensus 233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 312 (462)
+...+..+...+.+.|++++|...|+..++.. +.+...|..+...+.+.|++++|+..|++.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-----------------PQDPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566777788888999999999999888754 2467788888889999999999999998843
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHHhc-----------CCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHH
Q 036356 313 DYYIGKSEYRNNVIVNTVLIDMYAKC-----------GSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVL 378 (462)
Q Consensus 313 ~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 378 (462)
... +.+...+..+...|... |++++|...|++..+ | +...|..+...|...|++++|+..
T Consensus 67 -----~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 67 -----ART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp -----HHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 222 22466788888888888 999999999988763 4 456788888999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 379 FHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 379 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
|++..+.. .+...+..+..+|...|++++|...+++. ...| +...+..+...+...|+.++|+..+.+
T Consensus 141 ~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 141 LKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999866 67888899999999999999999999988 4344 567888899999999999999876654
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=3.5e-12 Score=113.22 Aligned_cols=245 Identities=7% Similarity=-0.136 Sum_probs=180.4
Q ss_pred HHHhCCChhHHHHHHHHhhhhhhhhcCC---CCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc
Q 036356 143 GYAKNGYAEEAVKLFPKWMDYYIGKSEY---RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE 219 (462)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 219 (462)
.....|++++|++.|+++ ..... +.+..++..+...|...|++++|...|++..+.++
T Consensus 14 ~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------------- 74 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQI-----LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-------------- 74 (275)
T ss_dssp CCCCCHHHHHHHHHHHHH-----HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------------
T ss_pred ccCccchHHHHHHHHHHH-----HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--------------
Confidence 345678889999999987 33321 12456777888888888888888888877553221
Q ss_pred hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356 220 WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299 (462)
Q Consensus 220 ~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 299 (462)
.+...+..+..++...|++++|...++.+.+.. +.+...|..+...|.+.|
T Consensus 75 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 75 ------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----------------PTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp ------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCTHHHHHHHHHHHHTT
T ss_pred ------------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------------ccccHHHHHHHHHHHHhc
Confidence 233456667777888999999999999999864 246788999999999999
Q ss_pred ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC--CCCccchHHHHHHHHhcCChHHHHH
Q 036356 300 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWV 377 (462)
Q Consensus 300 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~ 377 (462)
++++|...|++.+ . ..|+.......+..+...|++++|...++... .|+......++..+...++.++|..
T Consensus 126 ~~~~A~~~~~~a~-----~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 126 RDKLAQDDLLAFY-----Q--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 198 (275)
T ss_dssp CHHHHHHHHHHHH-----H--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred cHHHHHHHHHHHH-----H--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999943 2 23554455555556677899999999997665 2333333457777888888999999
Q ss_pred HHHHHHHCCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036356 378 LFHHIRKHGIEPR-----HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQT 446 (462)
Q Consensus 378 ~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 446 (462)
.+.+.... .|+ ...|..+...|.+.|++++|...+++. ...|+. +.....++...|++++|+..+
T Consensus 199 ~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99988763 332 578889999999999999999999998 666643 333455777788888888665
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=4.7e-12 Score=119.61 Aligned_cols=282 Identities=13% Similarity=0.023 Sum_probs=198.2
Q ss_pred hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe----eeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV----TLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.+..+...+...|++++|...|+++.+.+. .+. ..|..+...|...|++++|...|++.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-----------------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-----------------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445566778889999999999999998864 233 46888889999999999999999986
Q ss_pred hhhhhhhcCC-CCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc--CCcchH
Q 036356 161 MDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS--NEENEY 237 (462)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~--~~~~~~ 237 (462)
... ....+. .....++..+...|...|++++|...+++..+ ++..... ....++
T Consensus 113 l~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------~~~~~~~~~~~~~~~ 169 (411)
T 4a1s_A 113 LTL-AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT----------------------LARQLGDRLSEGRAL 169 (411)
T ss_dssp HHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHHTCHHHHHHHH
T ss_pred HHH-HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------HHHHhhchHHHHHHH
Confidence 211 011121 22356788888999999999999998886542 1111100 112345
Q ss_pred HHHHHhhcCccc-----------------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC
Q 036356 238 GTALDCSCDLEF-----------------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY 300 (462)
Q Consensus 238 ~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~ 300 (462)
..+...+...|+ +++|...++...+....... .......+..+...|...|+
T Consensus 170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD-----------RGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHcCC
Confidence 666677777888 88888888776543110000 00124577888889999999
Q ss_pred hhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-------CccchHHHHHHHHhcCC
Q 036356 301 AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-------DVVMRSAMTVGYGLHGL 371 (462)
Q Consensus 301 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-------~~~~~~~li~~~~~~~~ 371 (462)
+++|...+.+.+...-...........+..+...|...|++++|...|++..+ + ...++..+...|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999986542211111111234778888899999999999999987653 1 14567788888999999
Q ss_pred hHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 372 GEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 372 ~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+++|...+++.... +..+. ..++..+...|...|++++|.+.+++.
T Consensus 319 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 319 FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999887763 11111 457788888999999999999988886
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=7.1e-12 Score=118.36 Aligned_cols=274 Identities=12% Similarity=0.041 Sum_probs=198.2
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-c----hHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-V----IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 210 (462)
.+..+...+...|++++|+..|++. ... .|+ . .+|..+...|...|++++|...+++..+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~a-----l~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------- 114 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAA-----IQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT-------- 114 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----HHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHH-----HHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 3445667789999999999999997 333 233 2 4788888999999999999998886432
Q ss_pred HHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356 211 MIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288 (462)
Q Consensus 211 li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (462)
+.+.... .....+..+...+...|++++|...++...+.....+. .......+
T Consensus 115 --------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~ 169 (411)
T 4a1s_A 115 --------------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-----------RLSEGRAL 169 (411)
T ss_dssp --------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHH
T ss_pred --------------HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-----------hHHHHHHH
Confidence 1111100 12234566777788889999999988887664211000 01234578
Q ss_pred HHHHHHHHcCCC-----------------hhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhcc
Q 036356 289 NAMISGYAKNGY-----------------AEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDR 350 (462)
Q Consensus 289 ~~li~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (462)
..+...|...|+ +++|...+.+.+.-. ...+..+ ...++..+...|...|++++|...+++
T Consensus 170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM-RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 888889999999 999999998865421 1222222 345788888999999999999999988
Q ss_pred CCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHCC--C--CC-CHhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 351 TLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--I--EP-RHQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 351 ~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
..+ .+ ..++..+...|...|++++|.+.+++..+.. . .+ ...++..+...|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 763 12 2278889999999999999999999887731 1 11 156788899999999999999999998
Q ss_pred C-CC------CC-CHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 417 M-PI------EL-RLSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 417 m-~~------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
. .+ .+ ...++..+...|...|+.++|...+.+.+
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7 11 11 24478889999999999999998887654
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.1e-11 Score=116.61 Aligned_cols=279 Identities=11% Similarity=-0.006 Sum_probs=199.9
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC----chHHHHHHHHHHhcCCcccHHHHhhccCCCCcch
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVM 207 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 207 (462)
+....+......+...|++++|...|++. .... +.+ ..++..+...|...|++++|...+++...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~a-----l~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----- 75 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAA-----VQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT----- 75 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH-----HhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----
Confidence 34445666777889999999999999997 3332 112 35778888899999999999998876431
Q ss_pred HHHHHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCH
Q 036356 208 RSAMIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV 285 (462)
Q Consensus 208 ~~~li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (462)
+.+.... .....+..+...+...|++++|...++...+.....+. .....
T Consensus 76 -----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~ 127 (406)
T 3sf4_A 76 -----------------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-----------KVGEA 127 (406)
T ss_dssp -----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHH
T ss_pred -----------------HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----------ccchH
Confidence 1111100 11234566677778889999999888887654211000 00114
Q ss_pred hHHHHHHHHHHcCCC--------------------hhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchH
Q 036356 286 TLWNAMISGYAKNGY--------------------AEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLA 344 (462)
Q Consensus 286 ~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 344 (462)
.++..+...|...|+ +++|...+.+.+.-. ...+..| ...++..+...|...|++++|
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV-TALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 578888888999999 999999998865421 2222222 245788888999999999999
Q ss_pred HHHhccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356 345 PMFFDRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHA 410 (462)
Q Consensus 345 ~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 410 (462)
...+++..+ ++ ..+|..+...|...|++++|...+++..+. +-.+. ..++..+...|...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 999987762 22 237888999999999999999999988763 11111 56788899999999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 411 FKFIMNM----PIELR----LSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 411 ~~~~~~m----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
.+.+++. +..++ ..++..+...|...|++++|...+.+.+
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887 11122 5578899999999999999998887654
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.2e-11 Score=112.95 Aligned_cols=276 Identities=12% Similarity=0.005 Sum_probs=197.7
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-----chHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-----VIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 210 (462)
.+......+...|++++|...|++. ... .|+ ..++..+...|...|++++|...+++....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~a-----l~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------- 72 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAA-----VQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------- 72 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----HHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH-----Hhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 3445566788999999999999997 333 233 357788888999999999999988764321
Q ss_pred HHHHHHhCchHHHHHHHhhhc--CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356 211 MIVGYGLHEWSAFGSFDGLLS--NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288 (462)
Q Consensus 211 li~~~~~~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (462)
...... .....+..+...+...|++++|...++...+.....+. ......++
T Consensus 73 ---------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~ 126 (338)
T 3ro2_A 73 ---------------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-----------KVGEARAL 126 (338)
T ss_dssp ---------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHH
T ss_pred ---------------hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-----------chHHHHHH
Confidence 010000 11234566677788889999999998887664221000 00114477
Q ss_pred HHHHHHHHcCCC--------------------hhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHH
Q 036356 289 NAMISGYAKNGY--------------------AEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMF 347 (462)
Q Consensus 289 ~~li~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 347 (462)
..+...|...|+ +++|...+.+.+.-. ...+..+ ....+..+...|...|++++|...
T Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 127 YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV-TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 788888999999 999999998765421 1222222 245788888999999999999999
Q ss_pred hccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHH
Q 036356 348 FDRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKF 413 (462)
Q Consensus 348 ~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 413 (462)
+++..+ ++ ..++..+...+...|++++|.+.+++..+. +-.+. ..++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 987752 12 237788899999999999999999988763 11111 56788899999999999999999
Q ss_pred HHhC-CC---CC----CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 414 IMNM-PI---EL----RLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 414 ~~~m-~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
+++. .. .+ ...++..+...+...|++++|...+.+.+..
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9887 11 11 1447888999999999999999888877553
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.34 E-value=9.6e-12 Score=106.38 Aligned_cols=195 Identities=18% Similarity=0.070 Sum_probs=115.9
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 210 (462)
+++...+..+...+.+.|++++|+..|++. . .--+.+...+..+..++.+.|++++|+..|++..+.++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---- 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERA-----L-KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR---- 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHH-----H-TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-----H-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence 456677788888888888888888888885 2 222345677778888888888888888888876532111
Q ss_pred HHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCc-----------cchhhhHHHHHHHHHhCCCcchHHHHHHHHhh
Q 036356 211 MIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDL-----------EFLEQGKIVHGFMIKLGLELESDLLISLTAVC 279 (462)
Q Consensus 211 li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (462)
+...+..+..++.+. |++++|...++...+..
T Consensus 72 ----------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------- 114 (217)
T 2pl2_A 72 ----------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------------- 114 (217)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred ----------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---------------
Confidence 112233334444444 88888888888887764
Q ss_pred cCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cc
Q 036356 280 RYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DV 356 (462)
Q Consensus 280 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~ 356 (462)
+.+...|..+-..|...|++++|+..|++. .... .+...+..+..+|...|++++|...|++..+ | +.
T Consensus 115 --P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 115 --PRYAPLHLQRGLVYALLGERDKAEASLKQA-----LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred --cccHHHHHHHHHHHHHcCChHHHHHHHHHH-----Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 135677777788888888888888888874 3333 4555555555555555555555555554431 2 33
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHH
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHH 381 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~ 381 (462)
..+..+...+...|++++|...+++
T Consensus 186 ~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 186 DLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3444444455555555555544443
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=8.8e-11 Score=104.00 Aligned_cols=188 Identities=9% Similarity=-0.108 Sum_probs=98.8
Q ss_pred hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 036356 85 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYY 164 (462)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 164 (462)
.+......+...|++++|...|++..+..+ .+...+..+...+...|++++|++.|++.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---- 63 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-----------------NSPYIYNRRAVCYYELAKYDLAQKDIETY---- 63 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-----------------CCSTTHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHHhhHHHHHHHHHHH----
Confidence 344445555666666666666666665543 33445666666666666666666666664
Q ss_pred hhhcCCCCC--chHHHHHHHHHHhcCCcccHHHHhhccCC---CCcchHHHHHHHHHhCc--hHHHHHHHhhhc--C-Cc
Q 036356 165 IGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMIVGYGLHE--WSAFGSFDGLLS--N-EE 234 (462)
Q Consensus 165 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~a~~~~~~m~~--~-~~ 234 (462)
......++ ...|..+...|...|++++|...|++..+ .+...|..+...+...| ++|...|++... | +.
T Consensus 64 -~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 142 (272)
T 3u4t_A 64 -FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142 (272)
T ss_dssp -HTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred -HhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence 22221111 12355566666666666666666655432 23334444444444444 444554444444 2 22
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC---hhHHHHHhhHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY---AEEAVKLFPKW 311 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 311 (462)
..+..+...+...+++++|...++.+.+... .+...+..+...+...|+ .++|...+.+.
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLELKP-----------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 3333333122223377777777777666531 234555555555655555 55566666554
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.7e-11 Score=106.24 Aligned_cols=221 Identities=9% Similarity=-0.004 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhH
Q 036356 175 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGK 254 (462)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~ 254 (462)
..+..+...+...|++++|...|++..+.+ .+...+..+..++...|++++|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~A~ 58 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---------------------------KDITYLNNRAAAEYEKGEYETAI 58 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------------CCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------------------------ccHHHHHHHHHHHHHcccHHHHH
Confidence 456666677777777777777776543221 34455667777888889999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHhhcCCCC----HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356 255 IVHGFMIKLGLELESDLLISLTAVCRYQPN----VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330 (462)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (462)
..++...+.... ..++ ...|..+...|.+.|++++|...|.+.+ . ..|+.
T Consensus 59 ~~~~~a~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----~--~~~~~----- 112 (258)
T 3uq3_A 59 STLNDAVEQGRE--------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL-----T--EHRTA----- 112 (258)
T ss_dssp HHHHHHHHHHHH--------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----H--HCCCH-----
T ss_pred HHHHHHHHhCcc--------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----h--cCchh-----
Confidence 999988775421 0112 5788899999999999999999999953 2 23442
Q ss_pred HHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY 406 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 406 (462)
..+.+.|++++|...++...+ .+...|..+...+...|++++|...+++..+ ..|+ ...|..+...|...|+
T Consensus 113 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 113 --DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMS 188 (258)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCC
Confidence 346677889999999998764 2456788899999999999999999999998 4454 7889999999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 407 SNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 407 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
+++|.+.+++. ...| +...|..+...+...|+.++|...+.+.+..
T Consensus 189 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999998 3334 5778999999999999999999888876544
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.34 E-value=4.8e-11 Score=102.20 Aligned_cols=158 Identities=12% Similarity=0.026 Sum_probs=85.1
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcC-CChhHHHHHhhHHHHH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKN-GYAEEAVKLFPKWMDY 314 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~ 314 (462)
.+..+..++...|++++|...++.+.+.. +.+...+..+...+... |++++|...+.+.
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~--- 103 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIK-----------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKA--- 103 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHH---
Confidence 34444445555566666666666555543 13445555555666666 6666666666552
Q ss_pred HHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 036356 315 YIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP- 389 (462)
Q Consensus 315 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 389 (462)
...+..| +...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...+++..+ ..|
T Consensus 104 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~ 179 (225)
T 2vq2_A 104 --LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS--RVEV 179 (225)
T ss_dssp --HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCS
T ss_pred --HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 2211222 234555555556666666666666655442 2344555555666666666666666666555 223
Q ss_pred -CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 390 -RHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 390 -~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+...+..+...+...|+.++|..+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 180 LQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444555555555666666666665555
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.33 E-value=2.7e-11 Score=105.26 Aligned_cols=193 Identities=8% Similarity=-0.003 Sum_probs=110.3
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|...|.+.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~- 84 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----------------KEDAIPYINFANLLSSVNELERALAFYDKAL- 84 (243)
T ss_dssp -------------------CCTTHHHHHTTC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 3445555666666777777777777666542 2355666666667777777777777776632
Q ss_pred HHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 036356 314 YYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP- 389 (462)
Q Consensus 314 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 389 (462)
... +.+...+..+...|...|++++|...++++.+ .+...+..+...+...|++++|...++++.+ ..|
T Consensus 85 ----~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~ 157 (243)
T 2q7f_A 85 ----ELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNEN 157 (243)
T ss_dssp ----HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred ----HcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCc
Confidence 221 22455666666677777777777777766542 3445566666677777777777777777666 334
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 390 RHQHYARVVDLLARAGYSNHAFKFIMNM-PI-ELRLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
+...+..+...+.+.|++++|.+.+++. .. ..+..+|..+...+...|+.++|...+.+.+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 3556666777777777777777777666 22 23455666777777777777777766665544
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=3.1e-10 Score=100.41 Aligned_cols=196 Identities=9% Similarity=0.023 Sum_probs=129.9
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 314 (462)
..+..+..++.+.|++++|...++...+.+-.+ ......|..+...+...|++++|...|.+.+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~- 102 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT--------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVD- 102 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT--------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch--------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh-
Confidence 356666667777788888888887777632110 11233477777778888888888888877432
Q ss_pred HHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 036356 315 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR- 390 (462)
Q Consensus 315 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~- 390 (462)
.. +.+...+..+...|...|++++|...|++..+ | +...|..+...+...+++++|.+.|++..+ ..|+
T Consensus 103 ----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~ 175 (272)
T 3u4t_A 103 ----RD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNI 175 (272)
T ss_dssp ----HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTC
T ss_pred ----cC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccc
Confidence 21 12456777777888888888888888887764 2 344555555233445588888888888877 5565
Q ss_pred HhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 391 HQHYARVVDLLARAGY---SNHAFKFIMNM----PIELR------LSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
...+..+...+...|+ +++|...+++. .-.|+ ...|..+...|...|++++|+..+.+.+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5666677777777777 76777777665 12233 246777778888888888888777766543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.29 E-value=1.7e-10 Score=98.67 Aligned_cols=192 Identities=10% Similarity=-0.054 Sum_probs=158.4
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
...+..+...+...|++++|...++.+.+.. +.+...|..+...|...|++++|...+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~- 69 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-----------------PKNELAWLVRAEIYQYLKVNDKAQESFRQAL- 69 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----------------ccchHHHHHHHHHHHHcCChHHHHHHHHHHH-
Confidence 3456777888889999999999999998864 2467889999999999999999999999853
Q ss_pred HHHHhhCCCCchhHHHHHHHHHHhc-CCcchHHHHhccCCC--CC---ccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356 314 YYIGKSEYRNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLD--KD---VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387 (462)
Q Consensus 314 ~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 387 (462)
... +.+..++..+...|... |++++|...++++.+ .+ ...|..+...+...|++++|...++++.+ .
T Consensus 70 ----~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~ 142 (225)
T 2vq2_A 70 ----SIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--A 142 (225)
T ss_dssp ----HHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred ----HhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 222 23577888899999999 999999999998765 22 45678889999999999999999999988 4
Q ss_pred CCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 388 EPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIE--LRLSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 388 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
.|+ ...+..+...+.+.|++++|.+.+++. ... .+...+..+...+...|+.+++...+....
T Consensus 143 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 565 788999999999999999999999998 323 466678888888888999888876655544
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.28 E-value=1.6e-10 Score=107.28 Aligned_cols=245 Identities=11% Similarity=0.002 Sum_probs=173.4
Q ss_pred cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCC-hhHHHHHHHHhh
Q 036356 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGY-AEEAVKLFPKWM 161 (462)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 161 (462)
..+|+.+..++.+.|++++|...+++.++..+ -+...|+.+..++...|+ +++|+..|++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-----------------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a- 158 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-----------------ANYTVWHFRRVLLKSLQKDLHEEMNYITAI- 158 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-----------------cCHHHHHHHHHHHHHcccCHHHHHHHHHHH-
Confidence 45688888888889999999999999998865 567889999999999996 99999999996
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHH
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTAL 241 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll 241 (462)
... -+-+...|+.+..++.+.|++++|+..|++....+.. +...|..+.
T Consensus 159 ----l~l-~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--------------------------~~~a~~~lg 207 (382)
T 2h6f_A 159 ----IEE-QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--------------------------NYHAWQHRQ 207 (382)
T ss_dssp ----HHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--------------------------CHHHHHHHH
T ss_pred ----HHH-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--------------------------CHHHHHHHH
Confidence 322 2335778888999999999999999999887643332 233455566
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc-CCChhHH-----HHHhhHHHHHH
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK-NGYAEEA-----VKLFPKWMDYY 315 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~-~~~~~~a-----~~~~~~~~~~~ 315 (462)
.++.+.|++++|+..++.+++... .+...|+.+..++.+ .|..++| +..|.+.+.
T Consensus 208 ~~~~~~g~~~eAl~~~~~al~l~P-----------------~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~-- 268 (382)
T 2h6f_A 208 WVIQEFKLWDNELQYVDQLLKEDV-----------------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK-- 268 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--
T ss_pred HHHHHcCChHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--
Confidence 666778889999999999988752 467888888888888 6665777 466666332
Q ss_pred HHhhCCCC-chhHHHHHHHHHHhcC--CcchHHHHhccCC-C-CCccchHHHHHHHHhcC---------ChHHHHHHHHH
Q 036356 316 IGKSEYRN-NVIVNTVLIDMYAKCG--SVDLAPMFFDRTL-D-KDVVMRSAMTVGYGLHG---------LGEEGWVLFHH 381 (462)
Q Consensus 316 ~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~~---------~~~~a~~~~~~ 381 (462)
+.| +...|+.+...+.+.| +.++|...+.++. . .+...+..+...|.+.| ..++|.+++++
T Consensus 269 -----l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 269 -----LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp -----HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 234 3566777777777766 4666766666552 1 23345556666666653 24677777777
Q ss_pred H-HHCCCCCC-HhHHHHHHHHHH
Q 036356 382 I-RKHGIEPR-HQHYARVVDLLA 402 (462)
Q Consensus 382 m-~~~g~~p~-~~~~~~li~~~~ 402 (462)
+ .+ +.|. ...|..+...+.
T Consensus 344 l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 344 LAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHH--hCchhHHHHHHHHHHHH
Confidence 6 55 5565 334444444443
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.26 E-value=1.1e-09 Score=97.11 Aligned_cols=223 Identities=10% Similarity=-0.045 Sum_probs=113.3
Q ss_pred CchHHHHHHHHHHhcCCcccHHHHhhccCCC-CcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchh
Q 036356 173 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLE 251 (462)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~ 251 (462)
+..++..+...|...|++++|...|++..++ +...+..+...|.. .....++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~-------------------------g~~~~~~~~ 59 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQ-------------------------GQGVEKNLK 59 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------TSSSCCCHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-------------------------CCCcCCCHH
Confidence 4556667777788888888888888766543 23334444444433 000045555
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHc----CCChhHHHHHhhHHHHHHHHhhCCCCchhH
Q 036356 252 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIV 327 (462)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~ 327 (462)
+|...|+...+.+ +...+..+...|.. .+++++|...|++.+ +.+ +...
T Consensus 60 ~A~~~~~~a~~~~-------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-----~~~---~~~a 112 (273)
T 1ouv_A 60 KAASFYAKACDLN-------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-----DLK---YAEG 112 (273)
T ss_dssp HHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-----HTT---CHHH
T ss_pred HHHHHHHHHHHCC-------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-----HcC---CccH
Confidence 5555555554432 33344444444555 555555555555521 222 3444
Q ss_pred HHHHHHHHHh----cCCcchHHHHhccCCC-CCccchHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 036356 328 NTVLIDMYAK----CGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGEEGWVLFHHIRKHGIEPRHQHYARVV 398 (462)
Q Consensus 328 ~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 398 (462)
+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 189 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAG 189 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4445555555 5555555555554432 233344444445544 555555555555555532 234445555
Q ss_pred HHHHh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhhh
Q 036356 399 DLLAR----AGYSNHAFKFIMNM-PIELRLSVRRALLSAWKI----PMQQWENMLQTIRGID 451 (462)
Q Consensus 399 ~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 451 (462)
..|.. .+++++|.+.+++. ...| ...+..+...|.. .++.++|+..+.+...
T Consensus 190 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 190 NMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 55555 55555555555554 2222 4444555555555 5555555555544443
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.26 E-value=9.4e-11 Score=101.79 Aligned_cols=94 Identities=10% Similarity=-0.019 Sum_probs=37.5
Q ss_pred chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDY 163 (462)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (462)
.+|..+...+...|+++.|...|+++.+... .+...+..+...+...|++++|++.|++.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~--- 83 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-----------------EDAIPYINFANLLSSVNELERALAFYDKA--- 83 (243)
T ss_dssp ------------------CCTTHHHHHTTCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-----------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 3444445555555555555555555554432 34444555555555555555555555553
Q ss_pred hhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhcc
Q 036356 164 YIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 200 (462)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 200 (462)
... .+.+..++..+...|...|++++|...+++.
T Consensus 84 --~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 84 --LEL-DSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp --HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHc-CCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111 1223444455555555555555555555443
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=4.3e-10 Score=99.75 Aligned_cols=219 Identities=12% Similarity=-0.047 Sum_probs=164.7
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHh----cCCcccHHHHhhccCCC-Ccc
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLDK-DVV 206 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~ 206 (462)
-+..++..+...+...|++++|++.|++. .+ +.+...+..+...|.. .+++++|...|++..+. +..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a-----~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 75 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKA-----CD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSN 75 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHH-----HH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHH
Confidence 35677888889999999999999999996 44 3345778889999999 99999999999876533 222
Q ss_pred hHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcC----ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCC
Q 036356 207 MRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCD----LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282 (462)
Q Consensus 207 ~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (462)
. +..+...+.. .+++++|...|+...+.+
T Consensus 76 a-----------------------------~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------ 108 (273)
T 1ouv_A 76 G-----------------------------CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------ 108 (273)
T ss_dssp H-----------------------------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------
T ss_pred H-----------------------------HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------
Confidence 2 3334444444 778888888888877643
Q ss_pred CCHhHHHHHHHHHHc----CCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cCCcchHHHHhccCCC-
Q 036356 283 PNVTLWNAMISGYAK----NGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLD- 353 (462)
Q Consensus 283 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~- 353 (462)
+...+..+...|.. .+++++|...|.+. .+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 109 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a-----~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 109 -YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA-----CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH-----HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH-----HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 45667777777777 88888888888874 3333 45566677777777 8888888888887653
Q ss_pred CCccchHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036356 354 KDVVMRSAMTVGYGL----HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLAR----AGYSNHAFKFIMNM 417 (462)
Q Consensus 354 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 417 (462)
.+...+..+...|.. .+++++|.+.+++..+.+ | ...+..+...|.. .+++++|.+.+++.
T Consensus 180 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 180 KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 355667778888888 889999999999888843 3 6677778888888 88899998888876
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.23 E-value=4.5e-10 Score=104.20 Aligned_cols=243 Identities=9% Similarity=-0.051 Sum_probs=185.9
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC-cccHHHHhhccCCCCcchHHHHHH
Q 036356 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAPMFFDRTLDKDVVMRSAMIV 213 (462)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~li~ 213 (462)
..|+.+...+.+.|++++|++.|++. ... -+-+..+|+.+..++.+.|+ +++|+..|++....+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~a-----l~l-~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------- 164 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDA-----IEL-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------- 164 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHH-----HHh-CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-------
Confidence 45777788888999999999999986 222 23346788888899999996 99999998887643321
Q ss_pred HHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHH
Q 036356 214 GYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMIS 293 (462)
Q Consensus 214 ~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~ 293 (462)
+...|..+..++.+.|++++|+..|+.+++.. +-+...|..+..
T Consensus 165 -------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-----------------P~~~~a~~~lg~ 208 (382)
T 2h6f_A 165 -------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-----------------AKNYHAWQHRQW 208 (382)
T ss_dssp -------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----------------TTCHHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------ccCHHHHHHHHH
Confidence 23345566666777899999999999999875 257889999999
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh-cCCcchH-----HHHhccCC--CC-CccchHHHHH
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLA-----PMFFDRTL--DK-DVVMRSAMTV 364 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~--~~-~~~~~~~li~ 364 (462)
++.+.|++++|+..|++.+ ... .-+...|+.+..+|.+ .|..++| ...|++.. .| +...|+.+..
T Consensus 209 ~~~~~g~~~eAl~~~~~al-----~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLL-----KED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHH-----HhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999954 322 2257889999999999 6666888 47777665 34 5678888888
Q ss_pred HHHhcC--ChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC---------ChHHHHHHHHhC--CCCCCHH-HHHHH
Q 036356 365 GYGLHG--LGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG---------YSNHAFKFIMNM--PIELRLS-VRRAL 429 (462)
Q Consensus 365 ~~~~~~--~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g---------~~~~A~~~~~~m--~~~p~~~-~~~~l 429 (462)
.+...| ++++|.+.+.++ + ..|+ ...+..+...|.+.| .+++|+++++++ .+.|... .|..+
T Consensus 283 ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~ 359 (382)
T 2h6f_A 283 ILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 359 (382)
T ss_dssp HHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 999888 689999999988 3 4555 678889999998874 358999999998 6677544 55555
Q ss_pred HHHHHc
Q 036356 430 LSAWKI 435 (462)
Q Consensus 430 ~~~~~~ 435 (462)
...+..
T Consensus 360 ~~~l~~ 365 (382)
T 2h6f_A 360 GRSLQS 365 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=3e-10 Score=106.20 Aligned_cols=295 Identities=8% Similarity=-0.105 Sum_probs=203.6
Q ss_pred HHhCCChhHHHHHHHHhhhhhhhhcCC--CCCchHHHHHHHHH--HhcCCcccHH-----------HHhhccCCC--Ccc
Q 036356 144 YAKNGYAEEAVKLFPKWMDYYIGKSEY--RNNVIVNTVLIDMY--AKCGSVDLAP-----------MFFDRTLDK--DVV 206 (462)
Q Consensus 144 ~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~--~~~ 206 (462)
+.+.+++++|..++++... .-..+ .++...|..++..- .-.++++.+. +.++.+... +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~---~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~ 98 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQ---ELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLT 98 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHH
T ss_pred HHHHcCHHHHHHHHHHHHH---HHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCch
Confidence 5679999999999999721 11222 23344445444432 2234444444 666665421 111
Q ss_pred h------HHHHHHHHHhCc--hHHHHHHHhhhc-----CC----cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcch
Q 036356 207 M------RSAMIVGYGLHE--WSAFGSFDGLLS-----NE----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELES 269 (462)
Q Consensus 207 ~------~~~li~~~~~~~--~~a~~~~~~m~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 269 (462)
. +......+...| ++|...|++... ++ ..++..+..++...|+++.|...+....+.....+.
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 111233455556 999999998877 33 356888889999999999999999998765321000
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHh
Q 036356 270 DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFF 348 (462)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 348 (462)
. ......+++.+...|...|++++|...|.+.+.-. .+.+..+ ...++..+...|...|++++|...|
T Consensus 179 ~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 179 Y----------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA-EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp T----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred c----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 00124578888899999999999999999876521 1222112 2357888999999999999999999
Q ss_pred ccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-HhHHHHHHHHHHhcCC---hHHHHH
Q 036356 349 DRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG---IEPR-HQHYARVVDLLARAGY---SNHAFK 412 (462)
Q Consensus 349 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~-~~~~~~li~~~~~~g~---~~~A~~ 412 (462)
++..+ .+ ..++..+...|.+.|++++|.+.+++..+.. -.|. ...+..+...+...|+ +++|+.
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 87653 22 3457888999999999999999999987641 0122 3346778888888998 999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 413 FIMNMPIELR-LSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 413 ~~~~m~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
++++.+..|+ ...+..+...|...|++++|...+.+.+..
T Consensus 328 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 328 FLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999854443 447778999999999999999888876543
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.21 E-value=1.7e-09 Score=103.30 Aligned_cols=310 Identities=8% Similarity=-0.052 Sum_probs=136.3
Q ss_pred HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCCh---hHHHHHHHHhhhhhh
Q 036356 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA---EEAVKLFPKWMDYYI 165 (462)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~ 165 (462)
+...+.+.|++++|.++|++..+.|. ++ .+..|...|...|+. ++|++.|++-
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-----------------~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A----- 64 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-----------------SE--AQVGLADIQVGTRDPAQIKQAEATYRAA----- 64 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-----------------CT--GGGTCC---------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-----------------HH--HHHHHHHHHHccCCCCCHHHHHHHHHHH-----
Confidence 44455667788888888888777654 22 233344444445555 6677776664
Q ss_pred hhcCCCCCchHHHHHHHHHHhcC-----CcccHHHHhhccCCC-CcchHHHHHHHHHhCc-----hHHHHHHHhhhc-CC
Q 036356 166 GKSEYRNNVIVNTVLIDMYAKCG-----SVDLAPMFFDRTLDK-DVVMRSAMIVGYGLHE-----WSAFGSFDGLLS-NE 233 (462)
Q Consensus 166 ~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~-----~~a~~~~~~m~~-~~ 233 (462)
.+. +...+..|...+...+ ++++|..+|++..++ +...+..+...|...+ .++++.+..... .+
T Consensus 65 ~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 65 ADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY 140 (452)
T ss_dssp ----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred HhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence 211 3344444555344443 555666666654432 3334555555554443 233333333332 33
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC---ChhHHHHHhhH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG---YAEEAVKLFPK 310 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~ 310 (462)
......+...|...+.++.+......+.+.-.. .+...+..+...|.+.| +.++|++.|.+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----------------~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----------------TTDICYVELATVYQKKQQPEQQAELLKQMEA 204 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----------------TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 444444455554444444444332222222111 22224555555555555 55556666555
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHHhc----CCcchHHHHhccCCCCCccchHHHHHH-H--HhcCChHHHHHHHHHHH
Q 036356 311 WMDYYIGKSEYRNNVIVNTVLIDMYAKC----GSVDLAPMFFDRTLDKDVVMRSAMTVG-Y--GLHGLGEEGWVLFHHIR 383 (462)
Q Consensus 311 ~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~ 383 (462)
..+.|. ++...+..+...|... ++.++|..+|++....+...+..|... | ...+++++|.+.|++..
T Consensus 205 -----aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 205 -----GVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp -----HHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred -----HHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 222332 2233223344444332 455566666655542233444444444 2 33556666666666655
Q ss_pred HCCCCCCHhHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhhhcC
Q 036356 384 KHGIEPRHQHYARVVDLLARAG-----YSNHAFKFIMNMPIELRLSVRRALLSAWKI----PMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 384 ~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 453 (462)
+.| +...+..|...|. .| ++++|.+.|++.- .-+...+..|...|.. ..+.++|+..+.+....|
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 544 3344444444444 33 5666666666554 3344444444444443 225555555555444433
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=1.6e-10 Score=111.15 Aligned_cols=201 Identities=10% Similarity=-0.004 Sum_probs=169.5
Q ss_pred hHHHHHHHhhhc---CCcchHHHHHHhhcCccch-hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356 220 WSAFGSFDGLLS---NEENEYGTALDCSCDLEFL-EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295 (462)
Q Consensus 220 ~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 295 (462)
++++..+++... .+...+..+..++...|++ ++|++.|+...+.. +.+...|..+...|
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----------------p~~~~a~~~lg~~~ 147 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----------------PELVEAWNQLGEVY 147 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHH
Confidence 556666666555 3567788888899999999 99999999999875 24688899999999
Q ss_pred HcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhc---------CCcchHHHHhccCCC---CCccchHHHH
Q 036356 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC---------GSVDLAPMFFDRTLD---KDVVMRSAMT 363 (462)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li 363 (462)
.+.|++++|.+.|++.+ ...|+...+..+...|... |++++|...|++..+ .+...|..+.
T Consensus 148 ~~~g~~~~A~~~~~~al-------~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 220 (474)
T 4abn_A 148 WKKGDVTSAHTCFSGAL-------THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220 (474)
T ss_dssp HHHTCHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-------hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999843 3457778888999999999 999999999998763 4567888999
Q ss_pred HHHHhc--------CChHHHHHHHHHHHHCCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 036356 364 VGYGLH--------GLGEEGWVLFHHIRKHGIEP----RHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRAL 429 (462)
Q Consensus 364 ~~~~~~--------~~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 429 (462)
.+|... |++++|.+.|++..+ +.| +...|..+..+|...|++++|.+.+++. ...| +...+..+
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l 298 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999988 999999999999998 567 5889999999999999999999999998 4445 45678889
Q ss_pred HHHHHccCChHHHHHHH
Q 036356 430 LSAWKIPMQQWENMLQT 446 (462)
Q Consensus 430 ~~~~~~~~~~~~a~~~~ 446 (462)
...+...|+.++|+..+
T Consensus 299 ~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988644
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.19 E-value=4.9e-10 Score=92.83 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=106.2
Q ss_pred CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312 (462)
Q Consensus 233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 312 (462)
+...|..+..++.+.|++++|...|+..++.. +-+...|..+...|.+.|++++|...+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 66 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-----------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFV 66 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34556667777777777777777777777653 1356667777777777777777777776632
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356 313 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 313 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 389 (462)
... ..+...+..+...+...++++.|...+++..+ .+...+..+...|.+.|++++|++.|++..+ +.|
T Consensus 67 -----~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p 138 (184)
T 3vtx_A 67 -----VLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKP 138 (184)
T ss_dssp -----HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred -----hcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcc
Confidence 221 12344555556666667777777776665542 3445566666777777777777777777666 455
Q ss_pred C-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036356 390 R-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 423 (462)
+ ..+|..+..+|.+.|++++|++.|++. .+.|+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 4 556666777777777777777777665 444443
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=9.8e-11 Score=105.73 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=125.9
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhc--CCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHH
Q 036356 133 NVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS--EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSA 210 (462)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 210 (462)
+..++..+...+...|++++|..+|++......... .......++..+...|...|++++|...+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------- 97 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA-------- 97 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 345688889999999999999999999721100001 2333466788899999999999999998886442
Q ss_pred HHHHHHhCchHHHHHHHhhhc----CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC---cchHHHHHHHHhhcCCC
Q 036356 211 MIVGYGLHEWSAFGSFDGLLS----NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQP 283 (462)
Q Consensus 211 li~~~~~~~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~ 283 (462)
++++... .....+..+...+...|++++|...++...+.... ++ ...
T Consensus 98 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------------~~~ 151 (311)
T 3nf1_A 98 --------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD------------HPD 151 (311)
T ss_dssp --------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT------------CHH
T ss_pred --------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC------------ChH
Confidence 1111110 12345677788888999999999999988765200 00 012
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-CCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-EYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL 352 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (462)
....+..+...+...|++++|...|.+.+...-... +..| ...++..+...|...|++++|...|++..
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456688888999999999999999998654211111 1122 24566677777777777777777776654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=8.2e-10 Score=103.20 Aligned_cols=223 Identities=11% Similarity=-0.052 Sum_probs=127.3
Q ss_pred hccCCChhhHHHHHHhh------cCCCc--chHHHHHHhh--cCccchhhHH-----------HHHHHHHHhcCCcchhH
Q 036356 62 HLWSRTEWSAFGSFDGL------LSNEE--NEYGTALDCS--CDLEFLEQGK-----------IVHGFMIKLGLELESDL 120 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m------~~~~~--~~~~~ll~~~--~~~~~~~~a~-----------~~~~~m~~~g~~~~~~~ 120 (462)
+.+.+++++|..+++++ ...|. ..|..++..- .-.++++.+. +.++.+..... ..+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cchh
Confidence 78899999999999998 22333 3334443321 1234455555 77777655422 0000
Q ss_pred HHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC-CchHHHHHHHHHHhcCCcccHHHHhhc
Q 036356 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDR 199 (462)
Q Consensus 121 l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (462)
......+......+...|++++|+..|++.... ....+-.+ ...+|..+...|...|++++|...+++
T Consensus 100 ----------~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 100 ----------LLEYYFNFFRGMYELDQREYLSAIKFFKKAESK-LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000111223556678899999999999996200 00011112 246788899999999999999998876
Q ss_pred cCC-----CC-----cchHHHHHHHHHhCc--hHHHHHHHhhhc-----CC----cchHHHHHHhhcCccchhhhHHHHH
Q 036356 200 TLD-----KD-----VVMRSAMIVGYGLHE--WSAFGSFDGLLS-----NE----ENEYGTALDCSCDLEFLEQGKIVHG 258 (462)
Q Consensus 200 m~~-----~~-----~~~~~~li~~~~~~~--~~a~~~~~~m~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~ 258 (462)
..+ ++ ..+++.+...|...| ++|...|++... ++ ..++..+..++...|++++|...++
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 542 11 124455555565555 666666665554 11 1245555666666666666666666
Q ss_pred HHHHh----CCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356 259 FMIKL----GLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312 (462)
Q Consensus 259 ~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 312 (462)
...+. +.. +....++..+...|.+.|++++|...+.+.+
T Consensus 249 ~al~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 249 RAIAVFEESNIL---------------PSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCG---------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc---------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 65542 110 0123445555566666666666666665543
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=2.8e-09 Score=96.29 Aligned_cols=206 Identities=8% Similarity=-0.005 Sum_probs=154.4
Q ss_pred HHHHHHHhhhc--C-CcchHHHHHHhhc-------Cccch-------hhhHHHHHHHHHh-CCCcchHHHHHHHHhhcCC
Q 036356 221 SAFGSFDGLLS--N-EENEYGTALDCSC-------DLEFL-------EQGKIVHGFMIKL-GLELESDLLISLTAVCRYQ 282 (462)
Q Consensus 221 ~a~~~~~~m~~--~-~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 282 (462)
+|...|++... | +...|......+. +.|++ ++|..+|+..++. . +
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-----------------p 96 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-----------------K 96 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-----------------T
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-----------------c
Confidence 44455555555 3 3344544444443 34665 8999999999873 2 1
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hh-HHHHHHHHHHhcCCcchHHHHhccCCCCC---cc
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VV 357 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~ 357 (462)
.+...|..+...+.+.|++++|..+|++.+ . ..|+ .. .|..+...+.+.|++++|..+|++..+.+ ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-----~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLL-----A--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----T--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----h--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 356789999999999999999999999943 2 4554 33 79999999999999999999999887532 22
Q ss_pred chHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHH
Q 036356 358 MRSAMTVGYG-LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-P---IEL--RLSVRRAL 429 (462)
Q Consensus 358 ~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~l 429 (462)
.|........ ..|++++|..+|++..+ ..|+ ...|..++..+.+.|++++|..+|++. . +.| ....|..+
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3332222222 26999999999999988 4565 788999999999999999999999998 2 355 35689999
Q ss_pred HHHHHccCChHHHHHHHHhhhhc
Q 036356 430 LSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 430 ~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
+......|+.++|...+.+.++.
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999777766543
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=2.7e-09 Score=99.44 Aligned_cols=305 Identities=6% Similarity=-0.030 Sum_probs=206.4
Q ss_pred CCeeeHHHHHHHH--HhCCChhHHHHHHHHhhhhhhhhcCCC--CCchHHHHHHHH--HHhcCCcccHH---------HH
Q 036356 132 PNVTLRNAMISGY--AKNGYAEEAVKLFPKWMDYYIGKSEYR--NNVIVNTVLIDM--YAKCGSVDLAP---------MF 196 (462)
Q Consensus 132 p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~~~~~~li~~--~~~~g~~~~a~---------~~ 196 (462)
|+..+-+.|-..| .+.+++++|.+++++... .-..+. .+...|..++.. ..-.++++.+. ..
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~---~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQ---DIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH---HHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 4555555566666 889999999999998621 112222 334445555543 12224444444 56
Q ss_pred hhccCCCC-----cch---HHHHHHHHHhCc--hHHHHHHHhhhc-----CC----cchHHHHHHhhcCccchhhhHHHH
Q 036356 197 FDRTLDKD-----VVM---RSAMIVGYGLHE--WSAFGSFDGLLS-----NE----ENEYGTALDCSCDLEFLEQGKIVH 257 (462)
Q Consensus 197 ~~~m~~~~-----~~~---~~~li~~~~~~~--~~a~~~~~~m~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~ 257 (462)
++.+.... ... +......+...| ++|+..|++... ++ ..++..+..++...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 66554211 111 111223344555 999999998876 33 346778888999999999999999
Q ss_pred HHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHH
Q 036356 258 GFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYA 336 (462)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 336 (462)
....+.....+.. ......+++.+...|...|++++|.+.|.+.+.-. ...+..+ ...+++.+...|.
T Consensus 165 ~~al~~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 165 LQALDIYQNHPLY----------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp HHHHHHHHTSTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Confidence 9887643210000 00124567888899999999999999999876521 2222222 2457888899999
Q ss_pred hcCCcchHHHHhccCCC-----C---CccchHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC-HhHHHHHHHHHHhc
Q 036356 337 KCGSVDLAPMFFDRTLD-----K---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI---EPR-HQHYARVVDLLARA 404 (462)
Q Consensus 337 ~~g~~~~A~~~~~~~~~-----~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~ 404 (462)
..|++++|...|++..+ . ...++..+...|.+.|++++|...+++..+..- .|. ...+..+...+...
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 99999999999987753 2 244677888999999999999999999887521 222 44566666677778
Q ss_pred CC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 405 GY---SNHAFKFIMNMPIELR-LSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 405 g~---~~~A~~~~~~m~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
|+ +++|+..+++.+..|+ ...+..+...|...|++++|...+.+.+
T Consensus 314 ~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 314 VDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88 9999999999754443 3467789999999999999998887664
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.13 E-value=2.1e-09 Score=88.92 Aligned_cols=162 Identities=10% Similarity=0.050 Sum_probs=137.5
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccch
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMR 359 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 359 (462)
-+...|..+-..|.+.|++++|+..|++.+. .. +-+...+..+..+|.+.|++++|...++.... .+...+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-----AD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH
Confidence 4677899999999999999999999999542 22 22577888999999999999999999998763 355667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP 436 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~ 436 (462)
..+...+...++++.|...+.+... ..|+ ...+..+...|.+.|++++|++.+++. ...| +...|..+...|...
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 7788889999999999999999988 5665 778899999999999999999999998 4444 677899999999999
Q ss_pred CChHHHHHHHHhhhhc
Q 036356 437 MQQWENMLQTIRGIDE 452 (462)
Q Consensus 437 ~~~~~a~~~~~~~~~~ 452 (462)
|++++|+..+.+.++.
T Consensus 155 g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999998887653
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=1.3e-08 Score=94.52 Aligned_cols=298 Identities=8% Similarity=0.011 Sum_probs=193.7
Q ss_pred HHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee----eHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 036356 88 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT----LRNAMISGYAKNGYAEEAVKLFPKWMDY 163 (462)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 163 (462)
.....+...|+++.|...+++...... ..+.. +++.+...+...|++++|.+.+++....
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 82 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELP----------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 82 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCC----------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC----------------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334455678999999999999887643 22222 4566777888999999999999886210
Q ss_pred hhhhcCCC-CCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcC----CcchHH
Q 036356 164 YIGKSEYR-NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN----EENEYG 238 (462)
Q Consensus 164 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~----~~~~~~ 238 (462)
....+.. ....++..+...+...|++++|...+++... +..+...+ ....+.
T Consensus 83 -~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~----------------------~~~~~~~~~~~~~~~~~~ 139 (373)
T 1hz4_A 83 -ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ----------------------LINEQHLEQLPMHEFLVR 139 (373)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCTTSTHHHHHHH
T ss_pred -HHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------HHHHhccccCcHHHHHHH
Confidence 0111111 1123456677888899999999988876432 11111001 012344
Q ss_pred HHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356 239 TALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 318 (462)
Q Consensus 239 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (462)
.+...+...|++++|...++...+....... ......+..+...+...|++++|...+++.+.. ...
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~-~~~ 206 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQP------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENL-LGN 206 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCc------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhc
Confidence 5666777889999999999988876432110 012356777888899999999999999885421 011
Q ss_pred hCCCCchhHHH----HHHHHHHhcCCcchHHHHhccCCCCCcc-------chHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 036356 319 SEYRNNVIVNT----VLIDMYAKCGSVDLAPMFFDRTLDKDVV-------MRSAMTVGYGLHGLGEEGWVLFHHIRKH-- 385 (462)
Q Consensus 319 ~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 385 (462)
.+. + ..... ..+..+...|+.++|...++...+++.. .+..+...+...|++++|...+++....
T Consensus 207 ~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 207 GKY-H-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp SCC-C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCc-c-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 111 1 11111 2334577899999999999988754321 3456778899999999999999887653
Q ss_pred --CCCCCH-hHHHHHHHHHHhcCChHHHHHHHHhC-------CCC----CCHHHHHHHHHHHHccCCh
Q 036356 386 --GIEPRH-QHYARVVDLLARAGYSNHAFKFIMNM-------PIE----LRLSVRRALLSAWKIPMQQ 439 (462)
Q Consensus 386 --g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~----p~~~~~~~l~~~~~~~~~~ 439 (462)
|..++. ..+..+..++...|+.++|...+++. +.. ..-.....++..+......
T Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCS
T ss_pred hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHHHHHHHHHHhCCCC
Confidence 322232 36777788899999999999998876 211 1112344566666666664
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.11 E-value=4.3e-10 Score=101.46 Aligned_cols=208 Identities=10% Similarity=-0.017 Sum_probs=156.5
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 314 (462)
.++..+...+...|++++|..+++.+.+....... .........+..+...|...|++++|...+.+.+..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG---------HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC---------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45667778888899999999999988774100000 000134567888899999999999999999986642
Q ss_pred HHHhh-C-CCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-------C----CccchHHHHHHHHhcCChHHHHHHHHH
Q 036356 315 YIGKS-E-YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K----DVVMRSAMTVGYGLHGLGEEGWVLFHH 381 (462)
Q Consensus 315 ~~~~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 381 (462)
.-... + .......+..+...|...|++++|...|++..+ + ...++..+...|...|++++|.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21111 2 222467788899999999999999999987652 1 234677888999999999999999999
Q ss_pred HHHC------CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-C-----------------------------------
Q 036356 382 IRKH------GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-P----------------------------------- 418 (462)
Q Consensus 382 m~~~------g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~----------------------------------- 418 (462)
..+. +..|+ ..++..+...|...|++++|.+.++++ .
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 8874 22444 567888999999999999999998876 1
Q ss_pred --------------CCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 419 --------------IEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 419 --------------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
..| +..+|..+...|...|++++|...+.+.++
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123 345788999999999999999988877654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.09 E-value=8.4e-10 Score=106.07 Aligned_cols=203 Identities=9% Similarity=-0.136 Sum_probs=172.1
Q ss_pred ChhhHHHHHHhh---cCCCcchHHHHHHhhcCccch-hhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHH
Q 036356 67 TEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFL-EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMIS 142 (462)
Q Consensus 67 ~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~ 142 (462)
.+++++..++.. .+.+...+..+..++...|++ ++|...|++..+... .+...|..+..
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-----------------~~~~a~~~lg~ 145 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-----------------ELVEAWNQLGE 145 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-----------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-----------------CCHHHHHHHHH
Confidence 356677777766 344677889999999999999 999999999998865 56789999999
Q ss_pred HHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhc---------CCcccHHHHhhccC---CCCcchHHH
Q 036356 143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC---------GSVDLAPMFFDRTL---DKDVVMRSA 210 (462)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~---~~~~~~~~~ 210 (462)
.|.+.|++++|.+.|++. .. ..|+...+..+...|... |++++|+..|++.. ..+...|..
T Consensus 146 ~~~~~g~~~~A~~~~~~a-----l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 218 (474)
T 4abn_A 146 VYWKKGDVTSAHTCFSGA-----LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYI 218 (474)
T ss_dssp HHHHHTCHHHHHHHHHHH-----HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-----Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999996 33 346778889999999999 99999999999865 345677888
Q ss_pred HHHHHHhC--------c--hHHHHHHHhhhc--C----CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHH
Q 036356 211 MIVGYGLH--------E--WSAFGSFDGLLS--N----EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS 274 (462)
Q Consensus 211 li~~~~~~--------~--~~a~~~~~~m~~--~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (462)
+..+|... + ++|+..|++..+ | +...|..+..++...|++++|.+.|+...+..
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------- 288 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---------- 288 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 88888877 7 999999999888 6 56788889999999999999999999999874
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 275 l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
+.+...+..+...+...|++++|.+.+.+
T Consensus 289 -------p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 289 -------PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 24567788888999999999999988765
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.09 E-value=3.7e-09 Score=95.51 Aligned_cols=206 Identities=11% Similarity=0.055 Sum_probs=160.5
Q ss_pred hhHHHHHHhh---cCCCcchHHHHHHhhc-------Cccch-------hhHHHHHHHHHH-hcCCcchhHHHHHhhhcCC
Q 036356 69 WSAFGSFDGL---LSNEENEYGTALDCSC-------DLEFL-------EQGKIVHGFMIK-LGLELESDLLISLTAVCRY 130 (462)
Q Consensus 69 ~~A~~~~~~m---~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~-~g~~~~~~~l~~~~~~~~~ 130 (462)
++|+.+|++. .+.+...|..+...+. +.|++ ++|..+|++..+ ..+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p---------------- 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---------------- 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT----------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc----------------
Confidence 6888899988 5556778888887775 35776 899999999998 343
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC-ch-HHHHHHHHHHhcCCcccHHHHhhccCCCCc---
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VI-VNTVLIDMYAKCGSVDLAPMFFDRTLDKDV--- 205 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--- 205 (462)
-+...|..++..+.+.|++++|.++|++. .+ +.|+ .. +|..+...+.+.|++++|..+|++..+.+.
T Consensus 97 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-----l~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 168 (308)
T 2ond_A 97 -KNMLLYFAYADYEESRMKYEKVHSIYNRL-----LA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 168 (308)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred -ccHHHHHHHHHHHHhcCCHHHHHHHHHHH-----Hh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Confidence 45568999999999999999999999996 33 4554 33 899999999999999999999998765322
Q ss_pred chHHHHHHHHH-hCc--hHHHHHHHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhC-CCcchHHHHHHHHh
Q 036356 206 VMRSAMIVGYG-LHE--WSAFGSFDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLG-LELESDLLISLTAV 278 (462)
Q Consensus 206 ~~~~~li~~~~-~~~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 278 (462)
..|........ ..| ++|..+|++..+ | +...|..++..+.+.|++++|..+|+...+.. +.|+
T Consensus 169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~---------- 238 (308)
T 2ond_A 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE---------- 238 (308)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH----------
Confidence 23332222211 235 999999999988 5 46678888888999999999999999999863 3311
Q ss_pred hcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356 279 CRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312 (462)
Q Consensus 279 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 312 (462)
.....|..++..+.+.|+.++|..++.+.+
T Consensus 239 ----~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 239 ----KSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp ----GCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 246788999999999999999999998853
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.01 E-value=8.3e-09 Score=85.00 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=134.0
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSA 361 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 361 (462)
...|..+...+...|++++|...|.+.+ .. .+.+...+..+...+...|++++|...+++..+ .+...|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVY-----DA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTC-----CT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH-----Hh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4557777888999999999999999843 21 223577888899999999999999999998763 35677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHccCC
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PI-ELRLSVRRALLSAWKIPMQ 438 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~ 438 (462)
+...+...|++++|.+.++++.+. .| +...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 999999999999999999999883 44 4778889999999999999999999998 22 3467889999999999999
Q ss_pred hHHHHHHHHhhhhc
Q 036356 439 QWENMLQTIRGIDE 452 (462)
Q Consensus 439 ~~~a~~~~~~~~~~ 452 (462)
+++|...+.+.+..
T Consensus 160 ~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 160 HEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888877554
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.99 E-value=4.6e-08 Score=90.81 Aligned_cols=271 Identities=11% Similarity=-0.001 Sum_probs=180.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc----hHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHHH
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAM 211 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~l 211 (462)
.....+...|++++|...+++. .......+. .+++.+...+...|++++|...+++.... ....+.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 91 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLA-----LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-- 91 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-----HHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH--
Confidence 3444567789999999999885 232211222 24566777788889999998888765421 000000
Q ss_pred HHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCC--C-CHhHH
Q 036356 212 IVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ--P-NVTLW 288 (462)
Q Consensus 212 i~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~~ 288 (462)
...++..+...+...|++++|...++...+...... .. | ....+
T Consensus 92 ---------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~ 138 (373)
T 1hz4_A 92 ---------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH------------LEQLPMHEFLV 138 (373)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CTTSTHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc------------cccCcHHHHHH
Confidence 012244566677788999999999988776421100 00 2 23456
Q ss_pred HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCC----CCCc-cchHH--
Q 036356 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL----DKDV-VMRSA-- 361 (462)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~-- 361 (462)
..+...+...|++++|...+.+.+.. ....+.......+..+...+...|++++|...+++.. .++. ..+..
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 67778899999999999999986431 1111211134567788889999999999999998764 2222 12222
Q ss_pred ---HHHHHHhcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-HHHH
Q 036356 362 ---MTVGYGLHGLGEEGWVLFHHIRKHGIEPR---HQHYARVVDLLARAGYSNHAFKFIMNM-------PIELRL-SVRR 427 (462)
Q Consensus 362 ---li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~ 427 (462)
.+..+...|++++|...+++.......++ ...+..+...+...|++++|...+++. +..++. ..+.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 23447789999999999998876432111 235677888999999999999999876 212223 2667
Q ss_pred HHHHHHHccCChHHHHHHHHhhh
Q 036356 428 ALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 428 ~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
.+..++...|+.++|...+.+.+
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 78888999999999998777654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.96 E-value=8e-09 Score=85.10 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=132.0
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 315 (462)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--- 69 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-----------------AFDVDVALHLGIAYVKTGAVDRGTELLERSL--- 69 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Confidence 45566777888999999999998877643 2467888899999999999999999999853
Q ss_pred HHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 036356 316 IGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-H 391 (462)
Q Consensus 316 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~ 391 (462)
.. .+.+...+..+...|...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+. .|+ .
T Consensus 70 --~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 144 (186)
T 3as5_A 70 --AD-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEG 144 (186)
T ss_dssp --HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred --hc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--Cccch
Confidence 22 233577888899999999999999999998763 45677888899999999999999999999884 454 7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 392 QHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
..+..+...+...|++++|.+.+++.
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999999999999886
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.95 E-value=4.6e-09 Score=105.31 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=138.6
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cccch
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMR 359 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 359 (462)
+...|+.+-..|.+.|++++|++.|++.+. +.| +...|+.+..+|.+.|++++|...|++..+ | +...|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~-------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~ 80 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE-------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 467899999999999999999999999542 234 477899999999999999999999998763 4 56789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP 436 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~ 436 (462)
..+..+|...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..+...+...
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 9999999999999999999999998 7787 789999999999999999999999998 5556 467899999999999
Q ss_pred CChHHHHHHHHhhh
Q 036356 437 MQQWENMLQTIRGI 450 (462)
Q Consensus 437 ~~~~~a~~~~~~~~ 450 (462)
|++++|...+.+.+
T Consensus 159 g~~~~A~~~~~kal 172 (723)
T 4gyw_A 159 CDWTDYDERMKKLV 172 (723)
T ss_dssp TCCTTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 99999987776653
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.95 E-value=3.2e-07 Score=90.96 Aligned_cols=391 Identities=10% Similarity=-0.051 Sum_probs=232.7
Q ss_pred CccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccc-
Q 036356 26 LLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEF- 98 (462)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~- 98 (462)
..+....++.-++... .|...|..+ +.+.+.++.+..+|+.+ .+.....|...+..-.+.++
T Consensus 48 ~~d~i~~lE~~l~~np-----------~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~ 116 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-----------TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEE 116 (679)
T ss_dssp CSCHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--C
T ss_pred CHHHHHHHHHHHHHCc-----------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCc
Confidence 3344445555555542 377788877 66678999999999999 66667788888988888888
Q ss_pred --hhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCCh----hH----HHHHHHHhhhhhhhhc
Q 036356 99 --LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYA----EE----AVKLFPKWMDYYIGKS 168 (462)
Q Consensus 99 --~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~----~~----a~~~~~~m~~~~~~~~ 168 (462)
++.+..+|++.+...+ ..|++..|..-+.-..+.++. ++ ..++|+.- +...
T Consensus 117 ~~~~~v~~lfeRal~~~~---------------~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA----l~~v 177 (679)
T 4e6h_A 117 LDAAVIEPVLARCLSKEL---------------GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV----VDKC 177 (679)
T ss_dssp CCHHHHHHHHHHHTCSSS---------------CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH----HHHT
T ss_pred chHHHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH----HHHh
Confidence 9999999999987652 026777787777665554443 23 34666664 2444
Q ss_pred CC-CCC-chHHHHHHHHHHh---------cCCcccHHHHhhccCC-CCc---chH---HHHHHHHHhC-----------c
Q 036356 169 EY-RNN-VIVNTVLIDMYAK---------CGSVDLAPMFFDRTLD-KDV---VMR---SAMIVGYGLH-----------E 219 (462)
Q Consensus 169 ~~-~~~-~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~-~~~---~~~---~~li~~~~~~-----------~ 219 (462)
|. .++ ...|...+..... .++++.+.++|++... |.. .+| ..+...+... .
T Consensus 178 G~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~ 257 (679)
T 4e6h_A 178 AIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQ 257 (679)
T ss_dssp TTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHH
T ss_pred CcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHH
Confidence 65 554 4577777765432 3446677788877663 211 112 1111111000 0
Q ss_pred -hHHHHHHHhhhc---------CCc--------------------chHHHHHHhhcCcc-------chhhhHHHHHHHHH
Q 036356 220 -WSAFGSFDGLLS---------NEE--------------------NEYGTALDCSCDLE-------FLEQGKIVHGFMIK 262 (462)
Q Consensus 220 -~~a~~~~~~m~~---------~~~--------------------~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~ 262 (462)
..|...+.++.. |.. ..|...+.---..+ ..+.+..+|++.+.
T Consensus 258 y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 258 YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 112222222111 000 01111111100000 00111222222222
Q ss_pred ------------------hCCCcch--HHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH-----
Q 036356 263 ------------------LGLELES--DLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG----- 317 (462)
Q Consensus 263 ------------------~~~~~~~--~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----- 317 (462)
.|-.... .+|..-+..| +.+...|...+...-+.|++++|.++|++.+.....
T Consensus 338 ~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 338 HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 1111111 2222222222 346667888888899999999999999997653210
Q ss_pred hhCCCC------------chhHHHHHHHHHHhcCCcchHHHHhccCCCC-CccchHHHH---HHHHhc-CChHHHHHHHH
Q 036356 318 KSEYRN------------NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRSAMT---VGYGLH-GLGEEGWVLFH 380 (462)
Q Consensus 318 ~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li---~~~~~~-~~~~~a~~~~~ 380 (462)
..+. | ...+|...++...+.|+.+.|..+|....+. +..++...+ ..-.+. ++.+.|..+|+
T Consensus 416 ~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 416 MEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0111 3 2346888888888899999999999987643 333333322 222333 45899999999
Q ss_pred HHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 381 HIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL----RLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 381 ~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
...+. .|+ ...|...++.....|+.+.|..+|+.. ...| ....|...+.-=...|+.+.+.....++.+
T Consensus 495 ~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 495 LGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99984 454 566778888888999999999999997 3334 346889999988899998887755555544
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=6.5e-09 Score=104.23 Aligned_cols=158 Identities=9% Similarity=0.021 Sum_probs=138.6
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
...++.+..++.+.|++++|++.|++.++.. +-+...|+.+..+|.+.|++++|+..|++.+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-----------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-----------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4568888999999999999999999999874 23678899999999999999999999999542
Q ss_pred HHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356 314 YYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 314 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 389 (462)
+.| +...|..+..+|.+.|++++|.+.|++..+ | +...|+.+...|...|++++|++.|++..+ +.|
T Consensus 72 -------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P 142 (723)
T 4gyw_A 72 -------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKP 142 (723)
T ss_dssp -------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCS
T ss_pred -------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 234 477899999999999999999999998763 3 567899999999999999999999999998 788
Q ss_pred C-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 390 R-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+ ...|..+...|...|++++|.+.+++.
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 7 788999999999999999999988775
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=2.6e-08 Score=85.52 Aligned_cols=150 Identities=9% Similarity=-0.050 Sum_probs=125.7
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cccch
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMR 359 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 359 (462)
.|...|......+.+.|++++|...|.+. ......++...+..+..++...|++++|...|++..+ | +...|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEY-----LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHH-----HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH
Confidence 46678888888999999999999999994 3444336667777789999999999999999998763 3 45678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHH
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-H-------QHYARVVDLLARAGYSNHAFKFIMNM-PIELR---LSVRR 427 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~ 427 (462)
..+...|...|++++|...+++..+ ..|+ . ..|..+...+...|++++|++.+++. ...|+ ...|.
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 157 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 8899999999999999999999998 5666 3 45788888899999999999999998 66776 56788
Q ss_pred HHHHHHHccCCh
Q 036356 428 ALLSAWKIPMQQ 439 (462)
Q Consensus 428 ~l~~~~~~~~~~ 439 (462)
.+...|...|+.
T Consensus 158 ~l~~~~~~~~~~ 169 (228)
T 4i17_A 158 SLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888887
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=7e-08 Score=86.34 Aligned_cols=217 Identities=11% Similarity=-0.030 Sum_probs=146.6
Q ss_pred ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHh
Q 036356 149 YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDG 228 (462)
Q Consensus 149 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~ 228 (462)
++++|...|++. ...|...|++++|...|++.. .++.+
T Consensus 32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al----------------------~~~~~ 69 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAA----------------------DYQKK 69 (292)
T ss_dssp HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHH----------------------HHHHH
T ss_pred cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHH----------------------HHHHH
Confidence 488888888773 345677888888888877533 11111
Q ss_pred hhcC--CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC--CHhHHHHHHHHHHcC-CChhH
Q 036356 229 LLSN--EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP--NVTLWNAMISGYAKN-GYAEE 303 (462)
Q Consensus 229 m~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~li~~~~~~-~~~~~ 303 (462)
...+ ...+|+.+..+|.+.|++++|...++...+...... .+ -..+++.+...|... |++++
T Consensus 70 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-------------~~~~~a~~~~~lg~~~~~~lg~~~~ 136 (292)
T 1qqe_A 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-------------QFRRGANFKFELGEILENDLHDYAK 136 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 1110 134567777888888999999988888776421100 01 145788888899996 99999
Q ss_pred HHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CCcc--------chHHHHHHHHhcCCh
Q 036356 304 AVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVV--------MRSAMTVGYGLHGLG 372 (462)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~--------~~~~li~~~~~~~~~ 372 (462)
|+..|++.+.-. ...+..+. ..+++.+...|.+.|++++|...|++..+ |+.. .|..+..++...|++
T Consensus 137 A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 137 AIDCYELAGEWY-AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 999999976421 11111111 45688889999999999999999998753 2211 356677888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHh------HHHHHHHHHH--hcCChHHHHHHHHhC-CCCCCH
Q 036356 373 EEGWVLFHHIRKHGIEPRHQ------HYARVVDLLA--RAGYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~m-~~~p~~ 423 (462)
++|...|++..+ +.|+.. .+..++.++. ..+++++|++.++.+ .+.|+.
T Consensus 216 ~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 216 VAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 999999999887 556522 3444566664 457799999999887 555544
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=5.6e-09 Score=92.54 Aligned_cols=195 Identities=12% Similarity=-0.005 Sum_probs=146.8
Q ss_pred cCccchhhhHHHHHHHHHhCC---CcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-C
Q 036356 245 CDLEFLEQGKIVHGFMIKLGL---ELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-E 320 (462)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 320 (462)
...|++++|...+++..+.-. .++ .+....++..+...|...|++++|...+.+.+...-... +
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHD------------HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSS------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC
Confidence 457888888888887766310 000 012466788899999999999999999998664322111 2
Q ss_pred C-CCchhHHHHHHHHHHhcCCcchHHHHhccCCC-------C----CccchHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 036356 321 Y-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKH--- 385 (462)
Q Consensus 321 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 385 (462)
. .....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|.+.+++..+.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 22467888899999999999999999987652 2 2456788899999999999999999998874
Q ss_pred ---CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-C------------------------------------------
Q 036356 386 ---GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-P------------------------------------------ 418 (462)
Q Consensus 386 ---g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~------------------------------------------ 418 (462)
+-.|+ ..++..+...|...|++++|.+.+++. .
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 22444 568889999999999999999998776 1
Q ss_pred -------CCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 419 -------IEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 419 -------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
..| ...++..+...|...|++++|...+.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 234778899999999999999988877654
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.90 E-value=6.9e-09 Score=96.71 Aligned_cols=302 Identities=11% Similarity=-0.021 Sum_probs=164.6
Q ss_pred hccCCChhhHHHHHHhh------cCCC--cchHHHHHHhh--cCccchhhHH---------HHHHHHHHhcCCcchhHHH
Q 036356 62 HLWSRTEWSAFGSFDGL------LSNE--ENEYGTALDCS--CDLEFLEQGK---------IVHGFMIKLGLELESDLLI 122 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m------~~~~--~~~~~~ll~~~--~~~~~~~~a~---------~~~~~m~~~g~~~~~~~l~ 122 (462)
+...+++++|..+++++ ...| ...|-.++..- .-.+.++.+. ..++.+..... ..+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~--~~~~-- 97 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK--KLTG-- 97 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH--HHHH--
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC--CCcc--
Confidence 57889999999999987 2223 22333333321 1112222233 66666543221 0000
Q ss_pred HHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC----CchHHHHHHHHHHhcCCcccHHHHhh
Q 036356 123 SLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFD 198 (462)
Q Consensus 123 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~ 198 (462)
......|......+...|++++|+..|++.. ....-.+ ...++..+...|...|+++.|...++
T Consensus 98 --------~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 98 --------LLKYYSLFFRGMYEFDQKEYVEAIGYYREAE----KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 0001123334455778999999999999862 1111112 24577888899999999999988887
Q ss_pred ccCCCCcchHHHHHHHHHhCchHHHHHHHhhhc---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCC-cchHHHHH
Q 036356 199 RTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLS---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE-LESDLLIS 274 (462)
Q Consensus 199 ~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 274 (462)
+..+ ++..... ....+++.+..++...|++++|...++...+..-. ++.
T Consensus 166 ~al~----------------------~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----- 218 (378)
T 3q15_A 166 QALD----------------------IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND----- 218 (378)
T ss_dssp HHHH----------------------HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHH----------------------HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-----
Confidence 6431 1111000 00123445555556666666666666655542110 000
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-
Q 036356 275 LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD- 353 (462)
Q Consensus 275 l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 353 (462)
.....++..+...|...|++++|...|.+.+.- ....+.+....++..+...|.+.|++++|...+++..+
T Consensus 219 -------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 219 -------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV-SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp -------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 022345566666667777777777777666552 22223333356666677777777777777766665431
Q ss_pred ----CCc---cchHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 354 ----KDV---VMRSAMTVGYGLHGL---GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 354 ----~~~---~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.+. ..+..+...|...++ +++|...+++ .+..|+ ...+..+...|...|++++|.+.+++.
T Consensus 291 ~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp CCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111 123444445555566 5555555554 233333 345666777777788888887777664
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=4.3e-08 Score=87.71 Aligned_cols=194 Identities=8% Similarity=-0.089 Sum_probs=138.7
Q ss_pred HHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC-CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh
Q 036356 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 319 (462)
Q Consensus 241 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 319 (462)
...+...|++++|...|....+.....+ ..+ ...+|+.+...|.+.|++++|+..|.+.+.-. ...
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~ 110 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG------------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THR 110 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHc
Confidence 4456677889999988887766421100 001 25678899999999999999999999876522 122
Q ss_pred CCCC-chhHHHHHHHHHHhc-CCcchHHHHhccCCC--C---C----ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356 320 EYRN-NVIVNTVLIDMYAKC-GSVDLAPMFFDRTLD--K---D----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388 (462)
Q Consensus 320 ~~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 388 (462)
|-.. -..+++.+..+|... |++++|...|++..+ | + ..+|..+...|...|++++|...|++..+. .
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 188 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS--S 188 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--H
Confidence 2211 245788899999996 999999999998763 2 1 346888899999999999999999999984 3
Q ss_pred CCH--------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--ccCChHHHHHHHHhh
Q 036356 389 PRH--------QHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS------VRRALLSAWK--IPMQQWENMLQTIRG 449 (462)
Q Consensus 389 p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~ 449 (462)
|+. ..|..+..++...|++++|...+++. .+.|+.. .+..+..++. ..+++++|+..+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 431 15777888899999999999999998 5556533 3445666664 456788888666443
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=5e-08 Score=83.68 Aligned_cols=149 Identities=9% Similarity=-0.067 Sum_probs=102.8
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
...+......+.+.|++++|...|+...+.... ++...+..+..++.+.|++++|+..|.+.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al- 69 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----------------QDSVTAYNCGVCADNIKKYKEAADYFDIAI- 69 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----------------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-
Confidence 345566666777778888888888887776421 456666667777888888888888887742
Q ss_pred HHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CC-c-------cchHHHHHHHHhcCChHHHHHHHHHH
Q 036356 314 YYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD-V-------VMRSAMTVGYGLHGLGEEGWVLFHHI 382 (462)
Q Consensus 314 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~-------~~~~~li~~~~~~~~~~~a~~~~~~m 382 (462)
. ..| +...|..+...|...|++++|...|++..+ |+ . ..|..+...+...|++++|.+.|++.
T Consensus 70 ----~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 70 ----K--KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp ----H--TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----H--hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 2 233 456677777788888888888888877652 32 3 34666777777888888888888888
Q ss_pred HHCCCCCC---HhHHHHHHHHHHhcCCh
Q 036356 383 RKHGIEPR---HQHYARVVDLLARAGYS 407 (462)
Q Consensus 383 ~~~g~~p~---~~~~~~li~~~~~~g~~ 407 (462)
.+ ..|+ ...|..+...|...|+.
T Consensus 144 l~--~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 144 TD--VTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp TT--SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--cCCCcccHHHHHHHHHHHHHHHHH
Confidence 77 5665 45666666677666554
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.83 E-value=1.5e-08 Score=89.74 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=131.7
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCC---cchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLE---LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
..++..+...+...|++++|...++...+..-. ++ ......++..+...|...|++++|...|.+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD------------HPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc------------chHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 446777888888999999999999988765200 00 012456788899999999999999999999
Q ss_pred HHHHHHHhhCC--CCchhHHHHHHHHHHhcCCcchHHHHhccCCC-------C----CccchHHHHHHHHhcCChHHHHH
Q 036356 311 WMDYYIGKSEY--RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K----DVVMRSAMTVGYGLHGLGEEGWV 377 (462)
Q Consensus 311 ~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~ 377 (462)
.+...-...+. ......+..+...|...|++++|...|++..+ + ...++..+...|...|++++|..
T Consensus 111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 76532222222 22467788899999999999999999987652 1 23467888999999999999999
Q ss_pred HHHHHHHCC-----------------------------------------------CCCC-HhHHHHHHHHHHhcCChHH
Q 036356 378 LFHHIRKHG-----------------------------------------------IEPR-HQHYARVVDLLARAGYSNH 409 (462)
Q Consensus 378 ~~~~m~~~g-----------------------------------------------~~p~-~~~~~~li~~~~~~g~~~~ 409 (462)
.+++..+.. ..|+ ..++..+...|...|++++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 270 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 999887630 1233 5578889999999999999
Q ss_pred HHHHHHhC
Q 036356 410 AFKFIMNM 417 (462)
Q Consensus 410 A~~~~~~m 417 (462)
|.+++++.
T Consensus 271 A~~~~~~a 278 (283)
T 3edt_B 271 AHTLEDCA 278 (283)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 88
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.81 E-value=3.3e-06 Score=83.77 Aligned_cols=357 Identities=9% Similarity=-0.032 Sum_probs=232.0
Q ss_pred ChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHH
Q 036356 67 TEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISG 143 (462)
Q Consensus 67 ~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~ 143 (462)
...+.+..|+.. .+.|..+|..++..+.+.++++.+..+|+.+...-+ .+...|..-+..
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-----------------~~~~lW~~Yi~~ 109 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-----------------LMANIWCMRLSL 109 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHH
Confidence 344555556655 666888999999999999999999999999998854 566788888888
Q ss_pred HHhCCC---hhHHHHHHHHhhhhhhhhcC-CCCCchHHHHHHHHHHhcCCc--------ccHHHHhhccC------CC-C
Q 036356 144 YAKNGY---AEEAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSV--------DLAPMFFDRTL------DK-D 204 (462)
Q Consensus 144 ~~~~g~---~~~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~------~~-~ 204 (462)
-.+.|+ ++.+.++|+.- .... ..|++..|..-+....+.++. +.+.++|+... ++ .
T Consensus 110 E~~~~~~~~~~~v~~lfeRa-----l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s 184 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARC-----LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS 184 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHH-----TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred HHhhCCcchHHHHHHHHHHH-----HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccc
Confidence 888898 99999999995 2222 248888998888877666665 22346666522 22 3
Q ss_pred cchHHHHHHHHHh---------Cc--hHHHHHHHhhhc-CCcc---hH---HHHHHhhcC----------ccchhhhHHH
Q 036356 205 VVMRSAMIVGYGL---------HE--WSAFGSFDGLLS-NEEN---EY---GTALDCSCD----------LEFLEQGKIV 256 (462)
Q Consensus 205 ~~~~~~li~~~~~---------~~--~~a~~~~~~m~~-~~~~---~~---~~ll~~~~~----------~~~~~~a~~~ 256 (462)
...|...+.-... .+ +.+..+|++... |... +| ...-..... ..+++.|...
T Consensus 185 ~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~ 264 (679)
T 4e6h_A 185 IQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHH
Confidence 3567666654321 22 667888888877 4321 22 111111100 0122223333
Q ss_pred HHHHHHh--CCC---------------c---------------------------c--------hHHHHHHHHhhcCCCC
Q 036356 257 HGFMIKL--GLE---------------L---------------------------E--------SDLLISLTAVCRYQPN 284 (462)
Q Consensus 257 ~~~~~~~--~~~---------------~---------------------------~--------~~~~~~l~~~~~~~~~ 284 (462)
+.++... ++. | + ..+|...+..| .-+
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~ 342 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFA 342 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTC
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCC
Confidence 3332211 110 0 0 01233333333 346
Q ss_pred HhHHHHHHHHHHcCCChhHHH-HHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----------
Q 036356 285 VTLWNAMISGYAKNGYAEEAV-KLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---------- 353 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 353 (462)
...|-..+..+.+.|+.++|. ++|++.+ . .++.+...|-..+....+.|+++.|..+|+.+.+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi-----~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQ-----Q-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHH-----H-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----H-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 677777777788889988996 9998843 2 2334566677788888899999999999998763
Q ss_pred ---CC------------ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHhC
Q 036356 354 ---KD------------VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-GYSNHAFKFIMNM 417 (462)
Q Consensus 354 ---~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m 417 (462)
|+ ...|...+....+.|..+.|..+|.+..+.--.+....|...+..-.+. ++++.|.++|+..
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~ 496 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELG 496 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 31 2357788888888899999999999998851111234444333333344 4599999999987
Q ss_pred --CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356 418 --PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 418 --~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
...-+...|...+.-....|+.+.|...+.+.+...
T Consensus 497 Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 497 LKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 333456677888888888899999998887766543
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.75 E-value=1.1e-07 Score=73.47 Aligned_cols=90 Identities=11% Similarity=0.095 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHc
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PI-ELRLSVRRALLSAWKI 435 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~ 435 (462)
|..+...+...|++++|...++++... .|+ ...+..+...+...|++++|.+.++++ .. ..+...+..+...+..
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 334444444445555555555554442 222 334444555555555555555555544 11 1234445555555555
Q ss_pred cCChHHHHHHHHhhh
Q 036356 436 PMQQWENMLQTIRGI 450 (462)
Q Consensus 436 ~~~~~~a~~~~~~~~ 450 (462)
.|+.++|...+.+++
T Consensus 116 ~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 116 QGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHH
Confidence 555555555554443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=1.6e-07 Score=72.48 Aligned_cols=122 Identities=16% Similarity=0.285 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTV 364 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 364 (462)
|..+...+...|++++|..+|.+.+ ..+ +.+...+..+...+...|++++|..+|+++.+ .+...+..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKAL-----ELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHH-----HcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3334444444455555555554421 111 11233444444444555555555555544431 23334555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.+...|++++|.+.++++.+ ..| +...+..+...+.+.|++++|.+.++++
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 66666666666666666655 223 2455566666666666666666666654
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.61 E-value=2.7e-07 Score=80.97 Aligned_cols=167 Identities=10% Similarity=-0.037 Sum_probs=107.5
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
..+......+.+.|++++|...|+.+.+.... .|. ...+..+..+|.+.|++++|...|++.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l- 79 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---------------HEWAADAQFYLARAYYQNKEYLLAASEYERFI- 79 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH-
Confidence 34444555566677777777777777664311 011 4556666667777777777777777743
Q ss_pred HHHHhhCC-CC-chhHHHHHHHHHHh--------cCCcchHHHHhccCCC--CC-ccch-----------------HHHH
Q 036356 314 YYIGKSEY-RN-NVIVNTVLIDMYAK--------CGSVDLAPMFFDRTLD--KD-VVMR-----------------SAMT 363 (462)
Q Consensus 314 ~~~~~~~~-~p-~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~-~~~~-----------------~~li 363 (462)
.... .| ....+..+..++.. .|++++|...|++..+ |+ ...+ ..+.
T Consensus 80 ----~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 80 ----QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp ----HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11 23445555666666 7777777777776652 32 2223 4557
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCCCH
Q 036356 364 VGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYARVVDLLARA----------GYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~p~~ 423 (462)
..|.+.|++++|...|++..+ ..|+ ...+..+..+|... |++++|...+++. ...|+.
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 788899999999999999988 4454 45677788888766 8889999999887 334543
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=7.2e-07 Score=72.96 Aligned_cols=155 Identities=11% Similarity=0.062 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccchHHHH
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMT 363 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 363 (462)
.+......+.+.|++++|...|++.+. ..| +...+..+...|...|++++|...|++..+ |+.. +..+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~ 79 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD-------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-YKSLI 79 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH-------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-HHHHH
Confidence 455666788899999999999988542 123 467888899999999999999999999874 4322 22222
Q ss_pred H-H-HHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHcc
Q 036356 364 V-G-YGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR---LSVRRALLSAWKIP 436 (462)
Q Consensus 364 ~-~-~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~~~~~ 436 (462)
. . +...+....|...+++..+ ..|+ ...+..+...+...|++++|...+++. ...|+ ...+..+...+...
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 1 1 2232344557889999888 6786 788999999999999999999999998 55664 55899999999999
Q ss_pred CChHHHHHHHHhhhh
Q 036356 437 MQQWENMLQTIRGID 451 (462)
Q Consensus 437 ~~~~~a~~~~~~~~~ 451 (462)
|+.++|+..+.+.+.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999988876543
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1e-06 Score=88.61 Aligned_cols=168 Identities=12% Similarity=-0.020 Sum_probs=138.0
Q ss_pred cCccchhhhHHHHHHHH--------HhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356 245 CDLEFLEQGKIVHGFMI--------KLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316 (462)
Q Consensus 245 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 316 (462)
...|++++|.+.++... +.. +.+...|..+...|.+.|++++|+..|++.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--- 461 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-----------------SESVELPLMEVRALLDLGDVAKATRKLDDLAE--- 461 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-----------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-----------------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---
Confidence 78899999999999988 321 24567888889999999999999999998542
Q ss_pred HhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-Hh
Q 036356 317 GKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQ 392 (462)
Q Consensus 317 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 392 (462)
.. .-+...|..+..+|...|++++|...|++..+ | +...|..+..+|.+.|++++ .+.|++..+ ..|+ ..
T Consensus 462 --~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~ 535 (681)
T 2pzi_A 462 --RV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVIS 535 (681)
T ss_dssp --HH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHH
T ss_pred --cC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHH
Confidence 21 22567888899999999999999999998763 4 66788999999999999999 999999998 6776 67
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHccCC
Q 036356 393 HYARVVDLLARAGYSNHAFKFIMNM-PIELR-LSVRRALLSAWKIPMQ 438 (462)
Q Consensus 393 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~ 438 (462)
.|..+..++.+.|++++|++.+++. ...|+ ...|..+..++...++
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8999999999999999999999998 67776 4577777777766554
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=1.3e-06 Score=77.04 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=23.3
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCccc
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 192 (462)
|+-.--.|++..++.-...+ ....++ ..-.-+.++|...|+++.
T Consensus 20 ikn~fy~G~yq~~i~e~~~~-------~~~~~~-~~~~~~~Rs~iAlg~~~~ 63 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF-------SKVTDN-TLLFYKAKTLLALGQYQS 63 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS-------SCCCCH-HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhhHHHHHHHHHHhc-------CccchH-HHHHHHHHHHHHcCCCcc
Confidence 34444567777777644332 111222 222235577888887775
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.53 E-value=2.9e-06 Score=74.92 Aligned_cols=128 Identities=9% Similarity=0.047 Sum_probs=76.0
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-----
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K----- 354 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----- 354 (462)
++..++..+..++...|++++|++++.+. ...+. .-+...+..++..+.+.|+.+.|.+.+++|.+ |
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~-----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEG-----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHH-----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 34444455666677777777777777662 22222 12566666677777777777777777777653 3
Q ss_pred CccchHHHHHH--HHhcC--ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 355 DVVMRSAMTVG--YGLHG--LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 355 ~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+..+...|..+ ....| ++++|..+|+++.+ -.|+..+-..++.++...|++++|.+.++.+
T Consensus 173 ~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 173 DNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13344444444 22223 67777777777665 3455344444444677777777777777654
No 96
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=1.6e-06 Score=73.21 Aligned_cols=123 Identities=10% Similarity=-0.119 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHH
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAM 362 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 362 (462)
..+..+...+...|++++|...|.+. +.|+...|..+...|.+.|++++|...|++..+ .+...|..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV---------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS---------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 34445555566666666666666551 244555566666666666666666666655442 234455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC--------------CCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKHG--------------IEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~g--------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
...|...|++++|.+.|++..+.. ..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665521 1111 245555555666666666666665554
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.52 E-value=2.2e-06 Score=76.28 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=127.6
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccch
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMR 359 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 359 (462)
.+...+..+...+.+.|++++|...|++.+. . .| +...+..+...|.+.|++++|...+++... |+....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQ-----L--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----H--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHH-----h--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 4556677778889999999999999999532 2 23 467788899999999999999999999874 543322
Q ss_pred HH-HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 036356 360 SA-MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR---LSVRRALLSAW 433 (462)
Q Consensus 360 ~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~~ 433 (462)
.. ....+...++.+.|...+++... ..|+ ...+..+...+...|++++|...++++ ...|+ ...+..+...+
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 22 22336677888889999999888 6676 788999999999999999999999998 44444 67899999999
Q ss_pred HccCChHHHHHHHHhhh
Q 036356 434 KIPMQQWENMLQTIRGI 450 (462)
Q Consensus 434 ~~~~~~~~a~~~~~~~~ 450 (462)
...|+.++|+..+.+.+
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 99999999988776654
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=2.2e-06 Score=77.14 Aligned_cols=212 Identities=8% Similarity=-0.098 Sum_probs=107.1
Q ss_pred CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCe----eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCC
Q 036356 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNV----TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 170 (462)
Q Consensus 95 ~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 170 (462)
..|++++|.+++++..+.... . +.+ ..++. ..|+.....|...|++++|...|.+.... ....+-
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~--~------~~~--~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~-~~~~~~ 71 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT--S------FMK--WKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEA-HANNRS 71 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--C------SSS--CSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTC
T ss_pred ccchHHHHHHHHHHHHHHccc--c------ccC--CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcCC
Confidence 357788888888887764320 0 000 00111 13444555566666666666666654100 001111
Q ss_pred CC-CchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcC--CcchHHHHHHhhcCc
Q 036356 171 RN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSN--EENEYGTALDCSCDL 247 (462)
Q Consensus 171 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~--~~~~~~~ll~~~~~~ 247 (462)
.+ -..+|+.+...|.+.|++++|+..|++.. .++.+...+ -..++..+...|.+
T Consensus 72 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al----------------------~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 72 LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS----------------------VMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH----------------------HHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 11 13355556666666666666666655422 111111111 12345566667777
Q ss_pred cchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hh
Q 036356 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VI 326 (462)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~ 326 (462)
|++++|...|+...+.....+.. .....+++.+...|.+.|++++|+..|++.+.... ..+..+. ..
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~ 196 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERL-----------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK-EMENYPTCYK 196 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCh-----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCChhHHHH
Confidence 88888888887776532110000 00135677777778888888888888877543211 1111111 12
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCC
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTL 352 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (462)
.+..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444445555566666666555443
No 99
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.51 E-value=2.9e-06 Score=71.58 Aligned_cols=124 Identities=10% Similarity=-0.149 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG 405 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 405 (462)
.+..+...+...|++++|...|++..+++...|..+...|...|++++|.+.+++..+ ..|+ ...|..+...|...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcc
Confidence 3445677788899999999999999888888899999999999999999999999888 4455 678889999999999
Q ss_pred ChHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 406 YSNHAFKFIMNM-PIEL-----------------RLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 406 ~~~~A~~~~~~m-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
++++|.+.+++. ...| ....+..+..++...|++++|...+.+.+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999887 2222 2268888999999999999999888776543
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.51 E-value=2.1e-06 Score=73.33 Aligned_cols=181 Identities=9% Similarity=-0.089 Sum_probs=104.1
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC-CHhHHHHHHHHHHcCCChhHHHHHhhHHHHH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP-NVTLWNAMISGYAKNGYAEEAVKLFPKWMDY 314 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 314 (462)
.+..+...+.+.|++++|...|+.+.+.... .| ....+..+..+|.+.|++++|...|++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-- 68 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPF---------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-- 68 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Confidence 3444556677788888888888888876421 11 13467777888888889999988888843
Q ss_pred HHHhhCC-CCch-hHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 036356 315 YIGKSEY-RNNV-IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ 392 (462)
Q Consensus 315 ~~~~~~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 392 (462)
+... .+.. ..+..+..++.+.|.- .++ .|..+...+...|++++|...|+++.+ ..|+..
T Consensus 69 ---~~~P~~~~~~~a~~~~g~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~ 130 (225)
T 2yhc_A 69 ---RLNPTHPNIDYVMYMRGLTNMALDDS-----ALQ--------GFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQ 130 (225)
T ss_dssp ---HHCTTCTTHHHHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHT--TCTTCT
T ss_pred ---HHCcCCCcHHHHHHHHHHHHHhhhhh-----hhh--------hhhccchhhcCcHHHHHHHHHHHHHHH--HCcCCh
Confidence 2221 1111 2333444444442210 000 111222233344556666666666665 334421
Q ss_pred -HH-----------------HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 393 -HY-----------------ARVVDLLARAGYSNHAFKFIMNM-PIELR----LSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 393 -~~-----------------~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
.+ ..+...|.+.|++++|+..++++ ...|+ ...+..+..++.+.|+.++|+..+...
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11 34566778888888888888877 33343 246777888888888888888766544
Q ss_pred hh
Q 036356 450 ID 451 (462)
Q Consensus 450 ~~ 451 (462)
..
T Consensus 211 ~~ 212 (225)
T 2yhc_A 211 AA 212 (225)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.50 E-value=6.9e-07 Score=73.10 Aligned_cols=155 Identities=13% Similarity=0.035 Sum_probs=117.4
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 315 (462)
.+......+.+.|++++|...++...+.. +.+...+..+...+.+.|++++|...|++.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~--- 67 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-----------------QSRGDVKLAKADCLLETKQFELAQELLATIP--- 67 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-----------------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh---
Confidence 34555667788999999999999887753 2467889999999999999999999998842
Q ss_pred HHhhCCCCchhHHHHHHHH-HHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 036356 316 IGKSEYRNNVIVNTVLIDM-YAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR- 390 (462)
Q Consensus 316 ~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~- 390 (462)
. ..|+...+..+... +...++...|...+++.. .| +...+..+...+...|++++|...|+++.+ ..|+
T Consensus 68 --~--~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~ 141 (176)
T 2r5s_A 68 --L--EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK--VNLGA 141 (176)
T ss_dssp --G--GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTT
T ss_pred --h--ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCccc
Confidence 2 22333333222211 223334456788887765 34 567888999999999999999999999998 5554
Q ss_pred --HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 391 --HQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 391 --~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
...+..+...+...|+.++|...+++
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 55889999999999999999998875
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.50 E-value=8e-07 Score=74.94 Aligned_cols=167 Identities=11% Similarity=0.023 Sum_probs=117.8
Q ss_pred HHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHH----------------HHHHHHcCCChhH
Q 036356 240 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNA----------------MISGYAKNGYAEE 303 (462)
Q Consensus 240 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~ 303 (462)
....+.+.|++++|...|+...+... .+...|.. +..+|.+.|++++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNI-----------------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCH-----------------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHH
Confidence 34456678999999999999887641 12334444 7888999999999
Q ss_pred HHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCC--hHHHHHH
Q 036356 304 AVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGL--GEEGWVL 378 (462)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~--~~~a~~~ 378 (462)
|...|++.+ ... +-+...+..+..+|...|++++|...|++..+ | +...|..+...|...|+ .+.+...
T Consensus 73 A~~~~~~al-----~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 73 AYLFYKELL-----QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999853 222 22577888899999999999999999998763 4 56678888887766554 3445555
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036356 379 FHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLS 431 (462)
Q Consensus 379 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 431 (462)
+..... ..|....+.....++...|++++|...|++. .+.|+......+.+
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555543 2333334455566677789999999999997 77888765555444
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.50 E-value=1.8e-06 Score=76.84 Aligned_cols=158 Identities=9% Similarity=-0.003 Sum_probs=126.2
Q ss_pred CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHH
Q 036356 233 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWM 312 (462)
Q Consensus 233 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 312 (462)
+...+..+...+.+.|++++|...|+...+.. +.+...+..+...+.+.|++++|...+++.+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-----------------NQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----------------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----------------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 34456667777889999999999999999874 2467788999999999999999999999832
Q ss_pred HHHHHhhCCCCchhHHHHH-HHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036356 313 DYYIGKSEYRNNVIVNTVL-IDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIE 388 (462)
Q Consensus 313 ~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 388 (462)
. ..|+....... ...+...++.+.|...+++.. .| +...+..+...+...|++++|...|.++.+ ..
T Consensus 179 -----~--~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~ 249 (287)
T 3qou_A 179 -----L--QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR--XD 249 (287)
T ss_dssp -----G--GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred -----h--hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cc
Confidence 2 23544333222 334667888898999998776 34 567888999999999999999999999999 55
Q ss_pred CC---HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 389 PR---HQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 389 p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
|+ ...+..+...|...|+.++|...+++
T Consensus 250 p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 250 LTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 65 56899999999999999999888765
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.50 E-value=2.1e-06 Score=86.27 Aligned_cols=177 Identities=11% Similarity=-0.007 Sum_probs=142.9
Q ss_pred hHHHHHHHhhh--------c---CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHH
Q 036356 220 WSAFGSFDGLL--------S---NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLW 288 (462)
Q Consensus 220 ~~a~~~~~~m~--------~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (462)
++|++.+++.. . .+...+..+..++.+.|++++|...++...+.. +.+...|
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~a~ 470 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----------------GWRWRLV 470 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------CCCHHHH
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------cchHHHH
Confidence 99999999987 4 456678888899999999999999999999874 2477889
Q ss_pred HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHH
Q 036356 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTV 364 (462)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 364 (462)
..+..+|...|++++|...|++.+. ..| +...|..+..+|.+.|++++ ...|++..+ | +...|..+..
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLD-------TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 9999999999999999999999542 234 46788889999999999999 999998763 3 5668899999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC--------hHHHHHHHHhC-CCCCCH
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY--------SNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m-~~~p~~ 423 (462)
++.+.|++++|.+.|++..+ +.|+ ...|..+..++...|+ +++|.+.+..+ ...|+.
T Consensus 543 ~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99999999999999999887 7787 5677778788766444 77777777777 334443
No 105
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=5.7e-06 Score=73.80 Aligned_cols=158 Identities=13% Similarity=-0.009 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch----hHHHHHHHHHHhcCCcchHHHHhccCCC-----CCc---
Q 036356 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KDV--- 356 (462)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~--- 356 (462)
...+..+...|++++|..++.+.+. .....|+. ..+..+...+...|++++|...|++..+ ++.
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELK----KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT----TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhc----cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 3346788999999999999998421 22223332 2344566677778899999999987652 222
Q ss_pred -cchHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC
Q 036356 357 -VMRSAMTVGYGLHGLGEEGWVLFHHIRKH-----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIELR 422 (462)
Q Consensus 357 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~ 422 (462)
.+|+.+...|...|++++|...+++..+. +..|. ..+|..+...|.+.|++++|.+.+++. +..+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 25888999999999999999999998842 22233 457889999999999999999998876 22222
Q ss_pred -HHHHHHHHHHHHccCC-hHHHHHHHHhhh
Q 036356 423 -LSVRRALLSAWKIPMQ-QWENMLQTIRGI 450 (462)
Q Consensus 423 -~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 450 (462)
..+|..+..++...|+ +++|+..+.+.+
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6688999999999995 589988777653
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.49 E-value=2.7e-06 Score=72.70 Aligned_cols=144 Identities=11% Similarity=-0.059 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC-CC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--CCcc----c
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY-RN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVV----M 358 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 358 (462)
.+..+...+.+.|++++|...|++.+ .... .| ....+..+..+|.+.|++++|...|++..+ |+.. .
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~-----~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALD-----NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-----HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-----HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 34444555666677777777776632 2211 11 123444555566666666666666665542 2221 1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HH----------
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VR---------- 426 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~---------- 426 (462)
+..+..++...+.. .+ ..|..+...+...|++++|...|+++ ...|+.. .+
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 22222222222110 00 11122223334578999999999998 4445432 22
Q ss_pred -------HHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 427 -------RALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 427 -------~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
..+...|...|++.+|+..+.+.+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 34566789999999999888877654
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.49 E-value=1.4e-07 Score=75.00 Aligned_cols=137 Identities=11% Similarity=0.118 Sum_probs=103.0
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHh
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGL 368 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 368 (462)
..+...|++++|+..+... ....|+ ...+-.+...|.+.|++++|...|++..+ .+..+|..+..+|..
T Consensus 5 ~~~~~~~~~e~ai~~~~~a-------~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGS-------TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHH-------SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHh-------cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3455667888888888773 223333 44555678889999999999999998763 466788999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHH-HHhC-CCCC-CHHHHHHHHHHHHccCC
Q 036356 369 HGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKF-IMNM-PIEL-RLSVRRALLSAWKIPMQ 438 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~-~~~m-~~~p-~~~~~~~l~~~~~~~~~ 438 (462)
.|++++|...|++..+ +.|+ ...|..+...|.+.|++++|.+. +++. .+.| ++..|......+...|+
T Consensus 78 ~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998 7786 67888999999999999876665 4665 4455 45566666666666554
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.47 E-value=4.8e-06 Score=70.36 Aligned_cols=176 Identities=6% Similarity=-0.107 Sum_probs=137.8
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (462)
.+|.+.|....+. -+...+..+-..|...+++++|...|.+. .+.| +...+..
T Consensus 3 ~eA~~~~~~aa~~-------------------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a-----~~~g---~~~a~~~ 55 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-------------------GDRRAQYYLADTWVSSGDYQKAEYWAQKA-----AAQG---DGDALAL 55 (212)
T ss_dssp -CTTHHHHHHHHT-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HHTT---CHHHHHH
T ss_pred chHHHHHHHHHHC-------------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHcC---CHHHHHH
Confidence 4577777777775 36677888888898999999999999994 3443 4567777
Q ss_pred HHHHHHhcC----CcchHHHHhccCCC-CCccchHHHHHHHHh----cCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 036356 331 LIDMYAKCG----SVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDL 400 (462)
Q Consensus 331 li~~~~~~g----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~ 400 (462)
|-..|.. + +.++|..+|++..+ .+...+..|...|.. .+++++|.++|++..+.|... +...+..|...
T Consensus 56 lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 56 LAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLI 134 (212)
T ss_dssp HHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 7777877 6 89999999998765 466678888888877 889999999999999854321 26788888889
Q ss_pred HHh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHcc------CChHHHHHHHHhhhhcCC
Q 036356 401 LAR----AGYSNHAFKFIMNM-PIELRLSVRRALLSAWKIP------MQQWENMLQTIRGIDEGE 454 (462)
Q Consensus 401 ~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~ 454 (462)
|.. .+++++|.+++++. ...++...+..|...|... .+.++|+..+.+..+.|.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 88999999999998 4335666777787777653 289999999988877764
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.46 E-value=1.7e-06 Score=72.95 Aligned_cols=154 Identities=12% Similarity=-0.002 Sum_probs=116.5
Q ss_pred HHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHH----------------HHHHHHhcCCcchHHHHhccC
Q 036356 289 NAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTV----------------LIDMYAKCGSVDLAPMFFDRT 351 (462)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~----------------li~~~~~~g~~~~A~~~~~~~ 351 (462)
......+.+.|++++|...|.+.+. ..|+ ...|.. +..+|.+.|++++|...|++.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA-------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344567889999999999998542 2232 445555 888999999999999999987
Q ss_pred CC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC--hHHHHHHHHhC-CCCCCHH
Q 036356 352 LD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGY--SNHAFKFIMNM-PIELRLS 424 (462)
Q Consensus 352 ~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~--~~~A~~~~~~m-~~~p~~~ 424 (462)
.+ | +...|..+...|...|++++|...|++..+ +.|+ ...|..+...|...|+ .+.+...++.. ...|...
T Consensus 81 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhH
Confidence 63 4 667889999999999999999999999999 7787 6788888888876654 44556666665 3233333
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 425 VRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 425 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
.+..+..++...|++++|+..+.+.+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566677778999999988887764
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.45 E-value=1.9e-06 Score=75.46 Aligned_cols=163 Identities=10% Similarity=-0.051 Sum_probs=125.4
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-Cc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--CC---
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD--- 355 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--- 355 (462)
.+...+-.....+.+.|++++|...|.+.+ ..... |. ...+..+..+|.+.|++++|...|++..+ |+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-----~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVF-----TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHG-----GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 456677778888999999999999999943 32211 11 56778888999999999999999998873 42
Q ss_pred -ccchHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCC-HhHH-----------------HHHHHHHHhcCChH
Q 036356 356 -VVMRSAMTVGYGL--------HGLGEEGWVLFHHIRKHGIEPR-HQHY-----------------ARVVDLLARAGYSN 408 (462)
Q Consensus 356 -~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~-~~~~-----------------~~li~~~~~~g~~~ 408 (462)
...+..+..++.. .|++++|...|++..+ ..|+ .... ..+...|.+.|+++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 2345667778888 9999999999999998 4565 2333 45678899999999
Q ss_pred HHHHHHHhC-CCCCC----HHHHHHHHHHHHcc----------CChHHHHHHHHhhhhc
Q 036356 409 HAFKFIMNM-PIELR----LSVRRALLSAWKIP----------MQQWENMLQTIRGIDE 452 (462)
Q Consensus 409 ~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 452 (462)
+|+..+++. ...|+ ...+..+..+|... |++++|+..+.+.+..
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999998 33343 45777888888866 8889999888776553
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=1.3e-06 Score=78.14 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc----hhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC-
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD- 355 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~- 355 (462)
..+...+..+...|++++|.+.+.+.+. .....++ ...+..+...+...|++++|...+++..+ .+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELK----KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhc----cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 3455667788999999999999987432 1111111 12344466677888999999999876542 12
Q ss_pred ---ccchHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----
Q 036356 356 ---VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-GIEPR-----HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL---- 421 (462)
Q Consensus 356 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---- 421 (462)
..+|+.+...|...|++++|...+++..+. ...|+ ..+|..+...|.+.|++++|++.+++. .+.+
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 237888999999999999999999998732 11222 258889999999999999999999886 1111
Q ss_pred ---CHHHHHHHHHHHHccCChHHH-HHHHHhh
Q 036356 422 ---RLSVRRALLSAWKIPMQQWEN-MLQTIRG 449 (462)
Q Consensus 422 ---~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 449 (462)
-..+|..+...|...|+.++| ...+.+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 266889999999999999999 5445543
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.43 E-value=5.9e-06 Score=69.77 Aligned_cols=167 Identities=8% Similarity=-0.051 Sum_probs=128.3
Q ss_pred HHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCC
Q 036356 221 SAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNG 299 (462)
Q Consensus 221 ~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~ 299 (462)
+|+..|++..+ .+...+..+-..+...+++++|...|+...+.| +...+..+-..|.. +
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------------------~~~a~~~lg~~y~~-~ 63 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------------------DGDALALLAQLKIR-N 63 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHTTS-S
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHc-C
Confidence 45556665555 566777778888888899999999999988764 45666667777777 6
Q ss_pred ----ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh----cCCcchHHHHhccCCCCC-----ccchHHHHHHH
Q 036356 300 ----YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK----CGSVDLAPMFFDRTLDKD-----VVMRSAMTVGY 366 (462)
Q Consensus 300 ----~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~ 366 (462)
+.++|..+|.+. .+.| +...+..|...|.. .+++++|..+|++..+.+ ...+..|...|
T Consensus 64 g~~~~~~~A~~~~~~A-----~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y 135 (212)
T 3rjv_A 64 PQQADYPQARQLAEKA-----VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIY 135 (212)
T ss_dssp TTSCCHHHHHHHHHHH-----HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-----HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 899999999983 3333 45667777777876 789999999999887533 57888888888
Q ss_pred Hh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-C-----ChHHHHHHHHhC
Q 036356 367 GL----HGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA-G-----YSNHAFKFIMNM 417 (462)
Q Consensus 367 ~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m 417 (462)
.. .+++++|.+.|++..+. ..+...+..|...|... | ++++|..+++..
T Consensus 136 ~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 136 ASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 88 78999999999999885 34455777777777654 3 889999988876
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.40 E-value=1.5e-06 Score=78.23 Aligned_cols=158 Identities=6% Similarity=-0.123 Sum_probs=82.2
Q ss_pred HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC-------C--CccchH
Q 036356 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------K--DVVMRS 360 (462)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~ 360 (462)
....|...|++++|...|.+.+.-.. ..+-.+ -..+|+.+...|.+.|++++|...|++..+ + -..++.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 120 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHA-NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445566666666666665443211 111111 134556666666666666666666654431 1 123455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PI---ELR----LSVRR 427 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~ 427 (462)
.+...|.. |++++|+..+++..+. |-.+. ..++..+...|.+.|++++|++.+++. .+ .++ ...+.
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 55566655 6666666666665542 10000 345556666666666666666666655 11 011 12444
Q ss_pred HHHHHHHccCChHHHHHHHHhhh
Q 036356 428 ALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 428 ~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
.+...+...|++++|+..+.+.+
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555555566666666665544
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.38 E-value=0.00014 Score=69.71 Aligned_cols=163 Identities=10% Similarity=-0.029 Sum_probs=105.4
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHH---------------------HHHhh---------CCCC---chhHHH
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDY---------------------YIGKS---------EYRN---NVIVNT 329 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------~~~~~---------~~~p---~~~~~~ 329 (462)
.+...|...+..+.+.|++++|..++++.+.. .+... +..+ ....|.
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 45667777777778888888888888774321 00000 0000 012233
Q ss_pred HHHHHHHhcCCcchHHHHhccCCCCCccchHHHH---HHHH-hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 036356 330 VLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMT---VGYG-LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARA 404 (462)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~-~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 404 (462)
..+..+.+.++.+.|..+|+....|. .++...+ ..-. ..++.+.|..+|+...+. .|+ ...+...++...+.
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHc
Confidence 33444445677888999998884343 2333222 1111 234699999999998884 244 44566778877889
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 405 GYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 405 g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
|+.+.|..+|+... .....|...+.-=...|+.+.+...+.+++
T Consensus 368 ~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 368 GDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp TCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999983 357788888887777899877776676665
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.37 E-value=2.1e-06 Score=84.51 Aligned_cols=144 Identities=13% Similarity=-0.008 Sum_probs=71.3
Q ss_pred CChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHH
Q 036356 299 GYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEE 374 (462)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 374 (462)
|++++|.+.|++.+ ...| +...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++
T Consensus 3 g~~~~A~~~~~~al-------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 3 ADGPRELLQLRAAV-------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 45555666655522 1122 245555555666666666666666665442 234455555666666666666
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc---CChHHHHHHHHh
Q 036356 375 GWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP---MQQWENMLQTIR 448 (462)
Q Consensus 375 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~ 448 (462)
|.+.+++..+ ..|+ ...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...+.+
T Consensus 76 A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 76 AAVLLQQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 6666666655 3443 455556666666666666666666655 2223 344555566666666 666666655555
Q ss_pred hhh
Q 036356 449 GID 451 (462)
Q Consensus 449 ~~~ 451 (462)
.++
T Consensus 154 al~ 156 (568)
T 2vsy_A 154 AVA 156 (568)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.36 E-value=1e-06 Score=69.92 Aligned_cols=133 Identities=8% Similarity=-0.077 Sum_probs=100.9
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|+..++.. .+.+...+..+...|.+.|++++|...|++..+..+ -+..+|.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-----------------~~~~a~~ 69 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-----------------RDPKAHR 69 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHH
Confidence 45667889999999888 333455777888899999999999999999998865 5778899
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCC-CchHHHHHHHHHHhcCCcccHHHH-hhccC--CC-CcchHHHHHH
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMF-FDRTL--DK-DVVMRSAMIV 213 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~-~~~m~--~~-~~~~~~~li~ 213 (462)
.+...|.+.|++++|+..|++. .+ +.| +..+|..+...|.+.|+.++|.+. +++.. .| +...|.....
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~a-----l~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRS-----VE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----HH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHH-----HH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 9999999999999999999985 22 334 467888899999999999876654 46544 23 4455554444
Q ss_pred HHHhC
Q 036356 214 GYGLH 218 (462)
Q Consensus 214 ~~~~~ 218 (462)
.+...
T Consensus 143 ll~~~ 147 (150)
T 4ga2_A 143 LLDCE 147 (150)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 44433
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.35 E-value=3.1e-06 Score=83.31 Aligned_cols=145 Identities=7% Similarity=-0.028 Sum_probs=109.7
Q ss_pred ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-ch
Q 036356 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NV 325 (462)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~ 325 (462)
.|++++|.+.+++..+.. +.+...|..+...|.+.|++++|.+.|++.+ ...| +.
T Consensus 2 ~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~ 57 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-----------------PQDFVAWLMLADAELGMGDTTAGEMAVQRGL-------ALHPGHP 57 (568)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------TTSTTCH
T ss_pred CccHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCH
Confidence 478889999999887753 2467889999999999999999999999843 2334 47
Q ss_pred hHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 036356 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLL 401 (462)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 401 (462)
..+..+...|...|++++|...|++..+ .+...|..+...|...|++++|.+.+++..+ ..|+ ...+..+...+
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWR 135 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 7888999999999999999999998763 3567888999999999999999999999998 5665 67888999999
Q ss_pred Hhc---CChHHHHHHHHhC
Q 036356 402 ARA---GYSNHAFKFIMNM 417 (462)
Q Consensus 402 ~~~---g~~~~A~~~~~~m 417 (462)
... |++++|.+.+++.
T Consensus 136 ~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHHH
Confidence 999 9999999999987
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.30 E-value=5.5e-06 Score=73.92 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=120.6
Q ss_pred hHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHH
Q 036356 236 EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYY 315 (462)
Q Consensus 236 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 315 (462)
.+...+..+...|++++|.+.+....+.....+. .. .....+..+...+...|++++|+..+.+.+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-- 143 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQ----------QFLQWQYYVAAYVLKKVDYEYCILELKKLLN-- 143 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HH----------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HH----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Confidence 3445566778899999999999888775422100 00 0112234456677888999999999988542
Q ss_pred HHhhCCCCc--hhHHHHHHHHHHhcCCcchHHHHhccCC-----CCC-----ccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356 316 IGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTL-----DKD-----VVMRSAMTVGYGLHGLGEEGWVLFHHIR 383 (462)
Q Consensus 316 ~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 383 (462)
.......+. ..+|+.+...|...|++++|...|++.. .++ ..+|..+...|...|++++|...+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 111111222 4588899999999999999999998765 132 2578889999999999999999999877
Q ss_pred HC----CCCCC-HhHHHHHHHHHHhcCChHHH-HHHHHhC
Q 036356 384 KH----GIEPR-HQHYARVVDLLARAGYSNHA-FKFIMNM 417 (462)
Q Consensus 384 ~~----g~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m 417 (462)
+. +..+. ..+|..+...|.+.|++++| ...+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 63 22122 67889999999999999999 6666654
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.27 E-value=2e-06 Score=68.09 Aligned_cols=97 Identities=9% Similarity=-0.090 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL 400 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 400 (462)
...+..+...+.+.|++++|...|++..+ | +...|..+..+|...|++++|...|++..+ +.|+ ...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence 34455555566666666666666665542 2 445566666666666666666666666666 5555 5566666666
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCH
Q 036356 401 LARAGYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 401 ~~~~g~~~~A~~~~~~m-~~~p~~ 423 (462)
|.+.|++++|.+.|++. .+.|+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCH
Confidence 66667777776666665 334444
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.24 E-value=4.1e-06 Score=64.12 Aligned_cols=88 Identities=10% Similarity=0.024 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356 328 NTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR 403 (462)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 403 (462)
+......|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++..+ +.|+ ...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHH
Confidence 33444445555555555555554431 2344455555555566666666666666555 4444 4555556666666
Q ss_pred cCChHHHHHHHHhC
Q 036356 404 AGYSNHAFKFIMNM 417 (462)
Q Consensus 404 ~g~~~~A~~~~~~m 417 (462)
.|++++|++.|++.
T Consensus 94 ~~~~~~A~~~~~~a 107 (126)
T 4gco_A 94 MREWSKAQRAYEDA 107 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666666555
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.24 E-value=4.1e-05 Score=68.16 Aligned_cols=155 Identities=10% Similarity=-0.018 Sum_probs=92.7
Q ss_pred HHHHhCc--hHHHHHHHhhhc--C---C----cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcC
Q 036356 213 VGYGLHE--WSAFGSFDGLLS--N---E----ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRY 281 (462)
Q Consensus 213 ~~~~~~~--~~a~~~~~~m~~--~---~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (462)
..+...+ ++|...+++... + + ...+..+...+...+++++|...++...+....
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~--------------- 147 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--------------- 147 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC---------------
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc---------------
Confidence 3344444 666666666555 1 1 112334666777888999999999999885432
Q ss_pred CCC----HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-CCCCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC--
Q 036356 282 QPN----VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-EYRNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-- 353 (462)
Q Consensus 282 ~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 353 (462)
.++ ..+++.+...|...|++++|+..|.+.+... ... +..+. ..+|..+...|.+.|++++|...+++..+
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 123 3368889999999999999999999865421 111 22222 23556666666666666666666654431
Q ss_pred --C-C----ccchHHHHHHHHhcCC-hHHHHHHHHHHH
Q 036356 354 --K-D----VVMRSAMTVGYGLHGL-GEEGWVLFHHIR 383 (462)
Q Consensus 354 --~-~----~~~~~~li~~~~~~~~-~~~a~~~~~~m~ 383 (462)
. + ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 0 0 2234445555555553 355555554443
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.24 E-value=5.3e-06 Score=65.64 Aligned_cols=122 Identities=9% Similarity=-0.082 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 036356 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARA 404 (462)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 404 (462)
.....+.+.+...+-+.++..+ ...+...+..+...+.+.|++++|...|++... +.|+ ...|..+..+|...
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence 3455566666655554444321 112455778888999999999999999999998 7786 77889999999999
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhhcC
Q 036356 405 GYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGIDEG 453 (462)
Q Consensus 405 g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 453 (462)
|++++|+..|++. .+.| +...|..+..+|...|++++|+..+.+.+...
T Consensus 84 g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 84 EQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999998 4445 57789999999999999999999998876643
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=6.6e-06 Score=68.62 Aligned_cols=155 Identities=10% Similarity=-0.092 Sum_probs=109.6
Q ss_pred cCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-
Q 036356 245 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN- 323 (462)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p- 323 (462)
...|++++|.++++.+.. .+ ......+..+...+...|++++|...+.+.+.. ....+..|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~ 64 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HP---------------ATASGARFMLGYVYAFMDRFDEARASFQALQQQ-AQKSGDHTA 64 (203)
T ss_dssp ----CHHHHHHHHHHHHT--ST---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTTCCHHH
T ss_pred cccccHHHHHHHHHHhcC--Ch---------------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHcCCcHH
Confidence 467889999996555532 11 235677888888999999999999999886542 12233333
Q ss_pred chhHHHHHHHHHHhcCCcchHHHHhccCCC-----C-C----ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 036356 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----K-D----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEP 389 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p 389 (462)
....+..+...|...|++++|...+++..+ + + ..++..+...+...|++++|...+++..+. +-.+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 356778888889999999999988887642 2 2 234677888888999999999999887653 2111
Q ss_pred C-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 390 R-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 390 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
. ..++..+...+...|++++|.+.+++.
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1 344677888899999999998888775
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.19 E-value=9.8e-06 Score=61.22 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=43.7
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSA 361 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 361 (462)
...|..+...+...|++++|.+.|.+.+ ... +.+...+..+...+.+.|++++|..+|+++.+ .+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-----ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 4556666666666666666666666632 111 12233444444444444444444444444331 12233334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
+...|...|++++|...++++.+
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.19 E-value=1.1e-05 Score=64.70 Aligned_cols=114 Identities=8% Similarity=-0.011 Sum_probs=53.1
Q ss_pred HHHHHhcCCcchHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCh
Q 036356 332 IDMYAKCGSVDLAPMFFDRTL---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYS 407 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 407 (462)
...+...|++++|...|++.. ..+...|..+...+...|++++|...+++..+ ..|+ ...|..+...+...|++
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhccH
Confidence 333344444444444444332 11333444455555555555555555555555 2333 44555555555556666
Q ss_pred HHHHHHHHhC-CCCC-CHHHH--HHHHHHHHccCChHHHHHHHH
Q 036356 408 NHAFKFIMNM-PIEL-RLSVR--RALLSAWKIPMQQWENMLQTI 447 (462)
Q Consensus 408 ~~A~~~~~~m-~~~p-~~~~~--~~l~~~~~~~~~~~~a~~~~~ 447 (462)
++|.+.+++. ...| +...+ ..+...+...|++++|+..+.
T Consensus 98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 6666655554 2222 22233 222222445555555554443
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.18 E-value=9.2e-06 Score=62.32 Aligned_cols=112 Identities=11% Similarity=0.008 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 036356 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVD 399 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 399 (462)
+...+..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|.+.+++..+ ..|+ ...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 355566666666677777777777766542 2445666677777777777777777777776 4444 567777777
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccC
Q 036356 400 LLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPM 437 (462)
Q Consensus 400 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~ 437 (462)
.+.+.|++++|.+.+++. ...| +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777778888887777776 3334 3345555555555443
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.16 E-value=1.5e-05 Score=64.89 Aligned_cols=122 Identities=9% Similarity=0.087 Sum_probs=79.9
Q ss_pred hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356 244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323 (462)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p 323 (462)
+...|++++|...++...+.. +.+...|..+...|...|++++|...|.+.+. .. +.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~-p~ 76 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-----------------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-----LR-GE 76 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-----------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HH-CS
T ss_pred hhhccCHHHHHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC-CC
Confidence 456788889999988888764 24677888888888999999999999988532 11 12
Q ss_pred chhHHHHHHHH-HHhcCCc--chHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356 324 NVIVNTVLIDM-YAKCGSV--DLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390 (462)
Q Consensus 324 ~~~~~~~li~~-~~~~g~~--~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 390 (462)
+...+..+..+ |...|++ ++|...|++..+ | +...|..+...|...|++++|...|++..+ ..|+
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~ 147 (177)
T 2e2e_A 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSP 147 (177)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCT
T ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCC
Confidence 45556666666 6667776 777777766542 2 344566666667777777777777777666 4444
No 128
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.15 E-value=0.00055 Score=60.80 Aligned_cols=206 Identities=11% Similarity=-0.069 Sum_probs=155.2
Q ss_pred hHHHHHHHhhhc--CCc-chHHHHHHhhcCcc--chhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHH
Q 036356 220 WSAFGSFDGLLS--NEE-NEYGTALDCSCDLE--FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISG 294 (462)
Q Consensus 220 ~~a~~~~~~m~~--~~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~ 294 (462)
++|+..++.+.. |+. ..|+.--.++...+ +++++++.++.+..... -+...|+.--..
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-----------------k~y~aW~~R~~i 112 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-----------------KNYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-----------------TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-----------------ccHHHHHHHHHH
Confidence 678888888777 544 34566666666777 99999999999998753 355666665544
Q ss_pred H----HcC---CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcc--hHHHHhccCCC---CCccchHHH
Q 036356 295 Y----AKN---GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD--LAPMFFDRTLD---KDVVMRSAM 362 (462)
Q Consensus 295 ~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~---~~~~~~~~l 362 (462)
+ .+. +++++++.++.+++ ... +-+-..|+.-..++.+.|.++ ++...++++.+ .|...|+.-
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l-----~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R 186 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAML-----SSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR 186 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHH-----HhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4 445 78999999999854 322 346778887777888889988 99999998875 455667666
Q ss_pred HHHHHhcCC------hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHH
Q 036356 363 TVGYGLHGL------GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH-AFKFIMNM-PI----ELRLSVRRAL 429 (462)
Q Consensus 363 i~~~~~~~~------~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~l 429 (462)
...+.+.+. ++++++.++++.. ..|+ ...|+-+-..+.+.|+..+ +..+.++. .. ..+...+..+
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 666666665 8899999999998 6676 7888888888888888555 55677776 32 3477889999
Q ss_pred HHHHHccCChHHHHHHHHhhh
Q 036356 430 LSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 430 ~~~~~~~~~~~~a~~~~~~~~ 450 (462)
...|.+.|+.++|+..+....
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHH
Confidence 999999999999997776654
No 129
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.14 E-value=9.9e-05 Score=70.82 Aligned_cols=336 Identities=11% Similarity=-0.056 Sum_probs=204.5
Q ss_pred CC-CCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhhhccCCChhhHHHHHHhh--cCCCcchHHHHHHhhcCccc-
Q 036356 23 LP-SLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLYHLWSRTEWSAFGSFDGL--LSNEENEYGTALDCSCDLEF- 98 (462)
Q Consensus 23 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~~~- 98 (462)
.| +++.|.++|+.+++.-. . |+++.+..+|+.. ..|+...|...++...+.++
T Consensus 7 ~~~~i~~aR~vyer~l~~~P------------~-----------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~ 63 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYM------------S-----------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQK 63 (493)
T ss_dssp -----CCHHHHHHHHHHHHH------------T-----------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC--
T ss_pred cCcchHHHHHHHHHHHHHCC------------C-----------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCch
Confidence 45 48888888888876542 2 7899999999999 56888899888888876663
Q ss_pred hhhHHHHHHHHHHh-cCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHH----hCCChhHHHHHHHHhhhhhhhhcCCCCC
Q 036356 99 LEQGKIVHGFMIKL-GLELESDLLISLTAVCRYQPNVTLRNAMISGYA----KNGYAEEAVKLFPKWMDYYIGKSEYRNN 173 (462)
Q Consensus 99 ~~~a~~~~~~m~~~-g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 173 (462)
.+....+|+..... |. ..++...|...+.-+. ..|+++.+.++|+.. .. +++.
T Consensus 64 ~~~i~~~fe~al~~vg~---------------d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rA-----L~--~P~~ 121 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFEN---------------YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRA-----LQ--TPMG 121 (493)
T ss_dssp --CTHHHHHHHHHHSTT---------------CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH-----HT--SCCT
T ss_pred HHHHHHHHHHHHHHcCC---------------CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH-----Hh--Chhh
Confidence 46678888888764 43 0245677777776543 246788899999886 33 2221
Q ss_pred --chHHHHHHHHHHh-------------cCCcccHHHHhhccCC----CCcchHHHHHHHHHhC--c-------hHHHHH
Q 036356 174 --VIVNTVLIDMYAK-------------CGSVDLAPMFFDRTLD----KDVVMRSAMIVGYGLH--E-------WSAFGS 225 (462)
Q Consensus 174 --~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~--~-------~~a~~~ 225 (462)
...|......-.. .+.+..|..+++.... .+...|...+.--..+ + ..+..+
T Consensus 122 ~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 122 SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 1222222111100 0112222333322221 1233455544433222 1 235667
Q ss_pred HHhhhc--C-CcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhh------c--------C-------
Q 036356 226 FDGLLS--N-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVC------R--------Y------- 281 (462)
Q Consensus 226 ~~~m~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------~--------~------- 281 (462)
|++... | +...|...+.-+.+.|+.+.|..+++..... +.+...+....... + .
T Consensus 202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC---------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhh
Confidence 887777 4 3455666666667889999999999999988 33333332221110 0 0
Q ss_pred ---CCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHh-cCCcchHHHHhccCCC--C-
Q 036356 282 ---QPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAK-CGSVDLAPMFFDRTLD--K- 354 (462)
Q Consensus 282 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~--~- 354 (462)
......|...+....+.+.++.|..+|++ . .. ...+...|......-.. .++.+.|..+|+...+ |
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~-----A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIE-----L-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----H-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHH-----h-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 01124566667777677889999999998 3 11 11233444332222222 3469999999997753 3
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+...|...+....+.|+.+.|..+|++.. .....|...++--...|+.+.+.+++++.
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 23446667777788899999999999973 24677888888777889999998887776
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=2.4e-05 Score=59.05 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDL 400 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~ 400 (462)
...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|..+++++.+ ..| +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 56788888999999999999999998763 3566788899999999999999999999988 345 47788999999
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcc
Q 036356 401 LARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIP 436 (462)
Q Consensus 401 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~ 436 (462)
+...|++++|.+.++++ ...| +...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 99999999999999998 3334 455566665555443
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.14 E-value=4.8e-06 Score=69.47 Aligned_cols=149 Identities=12% Similarity=-0.064 Sum_probs=110.0
Q ss_pred HcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---------CCccchHHHHHHH
Q 036356 296 AKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---------KDVVMRSAMTVGY 366 (462)
Q Consensus 296 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~ 366 (462)
...|++++|.+.++. ... ........+..+...|...|++++|...+++..+ ....++..+...|
T Consensus 3 ~~~g~~~~A~~~~~~-----~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 3 FEAHDYALAERQAQA-----LLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp ----CHHHHHHHHHH-----HHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH-----hcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 467899999995544 211 2223567888899999999999999999987653 1334677888999
Q ss_pred HhcCChHHHHHHHHHHHHC----CCCC-C-HhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHH
Q 036356 367 GLHGLGEEGWVLFHHIRKH----GIEP-R-HQHYARVVDLLARAGYSNHAFKFIMNM----PIELR----LSVRRALLSA 432 (462)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~----g~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~l~~~ 432 (462)
...|++++|.+.+++..+. +-.| . ...+..+...+...|++++|.+.+++. ...++ ..++..+...
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL 156 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999987764 2122 1 456788889999999999999998876 11112 2356788899
Q ss_pred HHccCChHHHHHHHHhhh
Q 036356 433 WKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 433 ~~~~~~~~~a~~~~~~~~ 450 (462)
+...|++++|...+.+.+
T Consensus 157 ~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHH
Confidence 999999999998887654
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.13 E-value=1.3e-05 Score=61.10 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=38.6
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWK 434 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 434 (462)
.|..+...+...|++++|.+.+++..+ ..|+ ...+..+...+...|++++|.+.+++. ...| +...+..+...+.
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 344444555555555555555555554 2333 445555555555555555555555554 2222 3344444444444
Q ss_pred ccCC
Q 036356 435 IPMQ 438 (462)
Q Consensus 435 ~~~~ 438 (462)
..|+
T Consensus 126 ~~~~ 129 (131)
T 2vyi_A 126 KLRE 129 (131)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 4443
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.12 E-value=8.1e-06 Score=66.56 Aligned_cols=117 Identities=8% Similarity=-0.013 Sum_probs=91.5
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|+..|+.. .+.+...|..+..++...|+++.|...|++..+... .+...+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~ 82 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-----------------ENAELYA 82 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----------------SCHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CCHHHHH
Confidence 66788999999999887 444667888899999999999999999999988765 5667777
Q ss_pred HHHHH-HHhCCCh--hHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356 139 AMISG-YAKNGYA--EEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL 201 (462)
Q Consensus 139 ~li~~-~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (462)
.+... +...|++ ++|...|++. ... .+.+...+..+...|...|++++|...|++..
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~a-----l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKA-----LAL-DSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHH-----HHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888 7788998 9999999986 332 23346778888899999999999999998765
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.10 E-value=2.9e-05 Score=62.12 Aligned_cols=125 Identities=12% Similarity=0.036 Sum_probs=99.6
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSA 361 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 361 (462)
...|..+...+...|++++|...|.+.+. .. +.+...+..+...+...|++++|...+++..+ .+...|..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE-----LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 45577778889999999999999998532 22 23577888899999999999999999998763 35667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHH--HHHHHHHHhcCChHHHHHHHHhC
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHY--ARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~--~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+...+...|++++|...+++..+ ..|+ ...+ ......+.+.|++++|.+.++..
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 99999999999999999999998 4554 3444 33444477889999999988764
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.08 E-value=0.0003 Score=62.47 Aligned_cols=216 Identities=8% Similarity=-0.028 Sum_probs=129.3
Q ss_pred cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC--ChhHHHHHHHHhhhhhhhhcCCCCCc
Q 036356 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEYRNNV 174 (462)
Q Consensus 97 ~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~ 174 (462)
...++|.++++.++...+ -+...|+.--..+...| ++++++++++.. ... .+-+.
T Consensus 47 e~s~~aL~~t~~~L~~nP-----------------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~-----L~~-nPk~y 103 (306)
T 3dra_A 47 EYSERALHITELGINELA-----------------SHYTIWIYRFNILKNLPNRNLYDELDWCEEI-----ALD-NEKNY 103 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHH-----HHH-CTTCC
T ss_pred CCCHHHHHHHHHHHHHCc-----------------HHHHHHHHHHHHHHHcccccHHHHHHHHHHH-----HHH-CcccH
Confidence 345689999999998865 45566887777788888 999999999996 332 23345
Q ss_pred hHHHHHHHHH----Hhc---CCcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCc
Q 036356 175 IVNTVLIDMY----AKC---GSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDL 247 (462)
Q Consensus 175 ~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~ 247 (462)
.+|+.--..+ .+. +++++++.+++++.+.++..|.+ |+.-.-.+.+.
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a--------------------------W~~R~~vl~~l 157 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV--------------------------WSYRKWLVDTF 157 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH--------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH--------------------------HHHHHHHHHHh
Confidence 5565555544 444 67888888888777544433332 22212222223
Q ss_pred cchh--hhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC------hhHHHHHhhHHHHHHHHhh
Q 036356 248 EFLE--QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY------AEEAVKLFPKWMDYYIGKS 319 (462)
Q Consensus 248 ~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~~~ 319 (462)
|.++ ++++.++.+.+... -|...|+.-...+.+.++ ++++++.+.+.+. .
T Consensus 158 ~~~~~~~EL~~~~~~i~~d~-----------------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~-----~ 215 (306)
T 3dra_A 158 DLHNDAKELSFVDKVIDTDL-----------------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV-----K 215 (306)
T ss_dssp TCTTCHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH-----H
T ss_pred cccChHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH-----h
Confidence 3344 55666666666555 355555554444555554 6666666665331 1
Q ss_pred CCCCchhHHHHHHHHHHhcCCcch-HHHHhccCCC------CCccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 320 EYRNNVIVNTVLIDMYAKCGSVDL-APMFFDRTLD------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 320 ~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
. .-|...|+-+-..+.+.|+... +..+.++..+ .+...+..+...|.+.|+.++|.++++.+.+
T Consensus 216 ~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 216 C-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp C-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 1 2345566666666666665333 3344444432 2444566677777777888888888888764
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.08 E-value=6.4e-06 Score=72.96 Aligned_cols=187 Identities=13% Similarity=-0.063 Sum_probs=116.2
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
+...+..+...+.+.|++++|...|++..+... .+...|..+..++.+.|++++|+..+++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a- 64 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----------------LVAVYYTNRALCYLKMQQPEQALADCRRA- 64 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHH-
Confidence 445677777888888999999999999888754 46778888888899999999999999885
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCC--C-CcchHHHHHHHHHhCc-hHHHHHHHhhhcCCcchH
Q 036356 162 DYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMIVGYGLHE-WSAFGSFDGLLSNEENEY 237 (462)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~-~~a~~~~~~m~~~~~~~~ 237 (462)
.. -.+.+...+..+..+|...|++++|...|++..+ | +...+...+....+.. ............++....
T Consensus 65 ----l~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 139 (281)
T 2c2l_A 65 ----LE-LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL 139 (281)
T ss_dssp ----TT-SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHH
T ss_pred ----HH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 22 2233567788888899999999999998887653 2 1112222222222111 111111222222433333
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCC-HhHHHHHHHHHHcC-CChhHHHHHhhH
Q 036356 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPN-VTLWNAMISGYAKN-GYAEEAVKLFPK 310 (462)
Q Consensus 238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~li~~~~~~-~~~~~a~~~~~~ 310 (462)
...+..+. .|+.++|.+.++...+.. |+ ......+-..+.+. +++++|.++|..
T Consensus 140 ~~~l~~l~-~~~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 140 HSYLTRLI-AAERERELEECQRNHEGH------------------EDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHHHHHH-HHHHHHHHTTTSGGGTTT------------------SCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHhhhccc------------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333332 678888887777666532 43 33333333334444 567778888866
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=6.1e-05 Score=55.48 Aligned_cols=97 Identities=14% Similarity=-0.031 Sum_probs=77.9
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHH
Q 036356 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL---RLSVRRAL 429 (462)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l 429 (462)
+...|..+...+...|++++|...+++..+ ..|+ ...|..+...+...|++++|.+.+++. ...| +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 456677888888899999999999998887 4454 677888888899999999999998887 3334 47788888
Q ss_pred HHHHHcc-CChHHHHHHHHhhhhcC
Q 036356 430 LSAWKIP-MQQWENMLQTIRGIDEG 453 (462)
Q Consensus 430 ~~~~~~~-~~~~~a~~~~~~~~~~~ 453 (462)
...+... |++++|+..+.+.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999988887766543
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.06 E-value=2.1e-06 Score=71.64 Aligned_cols=157 Identities=10% Similarity=0.008 Sum_probs=98.4
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--C-Cc--------------
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DV-------------- 356 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-------------- 356 (462)
.....|+++++.+.+...... .......+..+...+.+.|++++|...|++..+ | +.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 344556677777776542111 111245566777788888999999988887652 2 22
Q ss_pred --cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036356 357 --VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLS 431 (462)
Q Consensus 357 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~ 431 (462)
..|..+..+|...|++++|...+++..+ +.|+ ...|..+..+|...|++++|.+.+++. .+.| +...+..+..
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 5778888899999999999999999988 5565 778889999999999999999999987 4444 5667777777
Q ss_pred HHHccCChHHHH-HHHHhhhhcCCCCCC
Q 036356 432 AWKIPMQQWENM-LQTIRGIDEGEKTDK 458 (462)
Q Consensus 432 ~~~~~~~~~~a~-~~~~~~~~~~~~pd~ 458 (462)
.+...++..++. ..+..+...|...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 192 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGMFDKGPLYEE 192 (198)
T ss_dssp HHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhc
Confidence 777777766665 344445555444433
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.06 E-value=3.6e-05 Score=66.96 Aligned_cols=182 Identities=7% Similarity=-0.111 Sum_probs=126.4
Q ss_pred CccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHH-------HHHHHcCCChhHHHHHhhHHHHHHHHh
Q 036356 246 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAM-------ISGYAKNGYAEEAVKLFPKWMDYYIGK 318 (462)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~ 318 (462)
..++...|.+.|..+.+... -....|..+ ...+.+.++..+++..+.+ .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-----------------~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~-------~ 73 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-----------------SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG-------S 73 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH-------T
T ss_pred cCCCHHHHHHHHHHHHHhCh-----------------hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH-------H
Confidence 68999999999999998752 345667766 3445544555555444444 2
Q ss_pred hCCCCc----------------------hhHHHHHHHHHHhcCCcchHHHHhccCCC--CCccchHHHHHHHHhcCChHH
Q 036356 319 SEYRNN----------------------VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KDVVMRSAMTVGYGLHGLGEE 374 (462)
Q Consensus 319 ~~~~p~----------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~ 374 (462)
.++.|+ ...+-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++
T Consensus 74 l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~d 153 (282)
T 4f3v_A 74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTD 153 (282)
T ss_dssp TTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHH
T ss_pred hcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHH
Confidence 333332 12233456678889999999999998873 433355556667888999999
Q ss_pred HHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHccCChHHHHHHHH
Q 036356 375 GWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM--P-IELR--LSVRRALLSAWKIPMQQWENMLQTI 447 (462)
Q Consensus 375 a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m--~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~ 447 (462)
|+..|+...... .|. ...+..+..++...|++++|++.|++. + ..|. ...+.....++.+.|+.++|...+.
T Consensus 154 A~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 154 VIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999998554411 111 336777888999999999999999988 2 2253 3467788888899999999998887
Q ss_pred hhhhc
Q 036356 448 RGIDE 452 (462)
Q Consensus 448 ~~~~~ 452 (462)
+....
T Consensus 233 ~a~a~ 237 (282)
T 4f3v_A 233 WLQTT 237 (282)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.05 E-value=2.5e-05 Score=61.61 Aligned_cols=90 Identities=11% Similarity=-0.077 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCCcchHHHHhccCC--C-CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 036356 326 IVNTVLIDMYAKCGSVDLAPMFFDRTL--D-KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLL 401 (462)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 401 (462)
..+..+...+.+.|++++|...|+... . .+...|..+..+|...|++++|...|++... +.|+ ...|..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence 344445555555666666666665543 1 2444555666666666666666666666666 4454 45566666666
Q ss_pred HhcCChHHHHHHHHhC
Q 036356 402 ARAGYSNHAFKFIMNM 417 (462)
Q Consensus 402 ~~~g~~~~A~~~~~~m 417 (462)
...|++++|.+.|++.
T Consensus 100 ~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 100 LQXGELAEAESGLFLA 115 (148)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666665
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.04 E-value=2.4e-05 Score=59.95 Aligned_cols=104 Identities=8% Similarity=-0.089 Sum_probs=75.7
Q ss_pred hccCCChhhHHHHHHhh--c-CCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL--L-SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|+..|++. . +.+..++..+..++...|++++|...+++..+... .+...+.
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~ 88 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-----------------TFIKGYT 88 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------CchHHHH
Confidence 77888888888888887 3 33566778888888888888888888888887754 4567777
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcC
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG 188 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g 188 (462)
.+...+.+.|++++|.+.|++. ... .+.+...+..+..++.+.|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~-----~~~-~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKA-----LDL-DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----HHH-CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHH-----HHh-CCCchHHHHHHHHHHHHhc
Confidence 8888888888888888888875 222 1223455666666665554
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.03 E-value=2.1e-05 Score=71.65 Aligned_cols=127 Identities=14% Similarity=-0.001 Sum_probs=87.3
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--------------hhHHHHHHHHHHhcCCcchHHHHhc
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--------------VIVNTVLIDMYAKCGSVDLAPMFFD 349 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~ 349 (462)
+...|..+...|.+.|++++|...|.+.+. ...... ...|..+..+|.+.|++++|...|+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-----~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS-----WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456788888889999999999999988542 221111 3667777777777777777777777
Q ss_pred cCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHH-HHHHhC
Q 036356 350 RTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAF-KFIMNM 417 (462)
Q Consensus 350 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~-~~~~~m 417 (462)
+..+ .+...|..+..+|...|++++|...|++..+ +.|+ ...+..+...+.+.|++++|. ..++.|
T Consensus 221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6652 3455667777777777777777777777776 5565 556666777777777777763 344443
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.02 E-value=2.5e-05 Score=71.07 Aligned_cols=139 Identities=7% Similarity=-0.073 Sum_probs=111.9
Q ss_pred CCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCC--CCC----------------ccc
Q 036356 298 NGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKD----------------VVM 358 (462)
Q Consensus 298 ~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----------------~~~ 358 (462)
.+++++|...+...+. ..| +...+..+...|.+.|++++|...|++.. .|+ ..+
T Consensus 126 L~~~~~A~~~~~~a~~-------~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE-------EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198 (336)
T ss_dssp EEEEECCCCGGGCCHH-------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHH-------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 3455666666655221 123 35678888899999999999999999876 344 368
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI 435 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 435 (462)
|..+..+|.+.|++++|+..+++..+ +.|+ ...|..+..+|...|++++|+..|++. .+.| +...+..+...+..
T Consensus 199 ~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 199 HLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999998 6675 788999999999999999999999998 4445 56788889999999
Q ss_pred cCChHHHHHH
Q 036356 436 PMQQWENMLQ 445 (462)
Q Consensus 436 ~~~~~~a~~~ 445 (462)
.|+.++|...
T Consensus 277 ~~~~~~a~~~ 286 (336)
T 1p5q_A 277 IRRQLAREKK 286 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888443
No 144
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.02 E-value=5.6e-05 Score=57.64 Aligned_cols=93 Identities=8% Similarity=-0.091 Sum_probs=81.6
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWK 434 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 434 (462)
.+......|.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 466778899999999999999999998 6676 788999999999999999999999998 4444 5778999999999
Q ss_pred ccCChHHHHHHHHhhhhc
Q 036356 435 IPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 435 ~~~~~~~a~~~~~~~~~~ 452 (462)
..|++++|+..+.+.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999877653
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.02 E-value=5.8e-05 Score=66.75 Aligned_cols=187 Identities=10% Similarity=-0.112 Sum_probs=120.2
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
...+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|...+.+.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al- 65 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----------------PLVAVYYTNRALCYLKMQQPEQALADCRRAL- 65 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence 3456667778888999999999999998864 2477888889999999999999999998843
Q ss_pred HHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036356 314 YYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 314 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 389 (462)
...| +...+..+..+|...|++++|...|++..+ | +...+...+....+.. ++. -+......-...
T Consensus 66 ------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~ 135 (281)
T 2c2l_A 66 ------ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQ 135 (281)
T ss_dssp ------TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCC
T ss_pred ------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhh
Confidence 2344 467788888999999999999999987763 2 2223333333332221 111 222233333444
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHcc-CChHHHHHHHHhhh
Q 036356 390 RHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVR-RALLSAWKIP-MQQWENMLQTIRGI 450 (462)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~l~~~~~~~-~~~~~a~~~~~~~~ 450 (462)
+......+ ..+ ..|++++|++.++.. ...|+.... ..+...+... +.++++...+.+..
T Consensus 136 ~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 136 ESELHSYL-TRL-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp CCHHHHHH-HHH-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHH-HHH-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444443 333 368999999988887 666765433 3333333333 44555665554443
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.99 E-value=2.6e-05 Score=61.49 Aligned_cols=82 Identities=10% Similarity=-0.054 Sum_probs=47.6
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|+..|+.. .+.+...|..+..++.+.|++++|...|++..+..+ .+...|.
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----------------~~~~~~~ 93 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-----------------XEPRFPF 93 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCTHHHH
T ss_pred HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCchHHH
Confidence 55566666666666655 233444555555566666666666666666665543 3445555
Q ss_pred HHHHHHHhCCChhHHHHHHHHh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m 160 (462)
.+..++...|++++|.+.|+..
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 5566666666666666666554
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.2e-05 Score=59.77 Aligned_cols=86 Identities=10% Similarity=-0.046 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 036356 330 VLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG 405 (462)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 405 (462)
.+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|...+++..+ +.|+ ...|..+..++...|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHh
Confidence 333444444444444444444331 2334455555555556666666666666555 3444 445555556666666
Q ss_pred ChHHHHHHHHhC
Q 036356 406 YSNHAFKFIMNM 417 (462)
Q Consensus 406 ~~~~A~~~~~~m 417 (462)
++++|.+.+++.
T Consensus 87 ~~~~A~~~~~~a 98 (126)
T 3upv_A 87 EYASALETLDAA 98 (126)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666665554
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.98 E-value=3.9e-05 Score=58.36 Aligned_cols=106 Identities=10% Similarity=-0.107 Sum_probs=68.3
Q ss_pred hccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+...|++++|+..|++. .+.+...+..+..++...|++++|...+++..+... .+...+.
T Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~ 84 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----------------AYSKAYG 84 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----------------cCHHHHH
Confidence 66677777777777776 333455666667777777777777777777776643 4455666
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCc
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV 190 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 190 (462)
.+...+...|++++|.+.|++. ... .+.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~-----~~~-~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKA-----LEL-DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----HHH-STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----Hhc-CccchHHHHHHHHHHHHHhcC
Confidence 6677777777777777777774 222 122445566666666666654
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.98 E-value=3.3e-05 Score=62.01 Aligned_cols=91 Identities=10% Similarity=-0.037 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL 400 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 400 (462)
...+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+ +.|+ ...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 33444455555555555555555555431 2445566666777777777777777777776 4555 5667777777
Q ss_pred HHhcCChHHHHHHHHhC
Q 036356 401 LARAGYSNHAFKFIMNM 417 (462)
Q Consensus 401 ~~~~g~~~~A~~~~~~m 417 (462)
|...|++++|.+.+++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 77777777777777766
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=5.3e-05 Score=56.42 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 036356 328 NTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLAR 403 (462)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 403 (462)
+..+...+...|++++|...|++..+ .+...|..+...+...|++++|...+++..+ ..|+ ...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH
Confidence 33344444444444444444444331 2334455555556666666666666666655 3343 4555666666666
Q ss_pred cCChHHHHHHHHhC
Q 036356 404 AGYSNHAFKFIMNM 417 (462)
Q Consensus 404 ~g~~~~A~~~~~~m 417 (462)
.|++++|.+.+++.
T Consensus 85 ~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 85 LNRFEEAKRTYEEG 98 (118)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 66666666666665
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.96 E-value=1.6e-05 Score=60.84 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccC
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRT 351 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (462)
..+..+-..+.+.|++++|+..|.+.+. +.| +...|+.+..+|.+.|++++|...|++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~-------~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE-------LDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3455555555555555555555555321 112 2344444444455555555554444443
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=5.8e-05 Score=59.86 Aligned_cols=132 Identities=14% Similarity=0.028 Sum_probs=68.2
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD---- 355 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~---- 355 (462)
..++..+...+...|++++|...+.+.+...-...........+..+...|...|++++|...+++..+ .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345677777888899999999999886542111111111123555566666666666666666655431 11
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHh
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR-HQHYARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 416 (462)
..++..+...+...|++++|.+.+++..+. +..+. ...+..+...+...|++++|.+.+++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 223444455555555555555555544432 11111 22344444444445555555444443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.95 E-value=1.6e-05 Score=60.79 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------HhHH
Q 036356 326 IVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR--------HQHY 394 (462)
Q Consensus 326 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------~~~~ 394 (462)
..+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|++.+++..+ +.|+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHH
Confidence 3455566666666666666666665542 2445566666666666666666666666655 2222 1345
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036356 395 ARVVDLLARAGYSNHAFKFIMNM-PIELRLSVR 426 (462)
Q Consensus 395 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 426 (462)
..+..++...|++++|++.|++. ...||+.+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 55556666666666666666654 334554443
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=1.3e-05 Score=61.23 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccC
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRT 351 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (462)
...|..+...+...|++++|...|.+.+ ... +.+...+..+...|...|++++|...+++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAK-----ELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-----hcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445555666666666666666666632 111 123344444444444555555555444443
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.94 E-value=6.2e-05 Score=58.07 Aligned_cols=91 Identities=7% Similarity=-0.102 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL 400 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 400 (462)
...+..+...+...|++++|...|+...+ .+...|..+..++...|++++|...+++..+ ..|+ ...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 33444444444444444444444444331 2234455556666666666666666666665 3343 4556666666
Q ss_pred HHhcCChHHHHHHHHhC
Q 036356 401 LARAGYSNHAFKFIMNM 417 (462)
Q Consensus 401 ~~~~g~~~~A~~~~~~m 417 (462)
+...|++++|...+++.
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 66666666666666655
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.92 E-value=4.6e-05 Score=59.53 Aligned_cols=89 Identities=13% Similarity=-0.037 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLA 402 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~ 402 (462)
.+..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|...|++... +.|+ ...|..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 33344455556666666666666544 22 444555666666666666667666666666 4454 455666666666
Q ss_pred hcCChHHHHHHHHhC
Q 036356 403 RAGYSNHAFKFIMNM 417 (462)
Q Consensus 403 ~~g~~~~A~~~~~~m 417 (462)
..|++++|.+.++..
T Consensus 98 ~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 98 QLGDLDGAESGFYSA 112 (142)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 677777776666665
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=4.5e-05 Score=72.02 Aligned_cols=205 Identities=7% Similarity=-0.025 Sum_probs=135.7
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCCcchHHHHH-HHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLIS-LTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (462)
..+.+.|++++|.+.|..+.+............ .... ........+..+...|.+.|++++|.+.+...+.- .+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~----~~ 86 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDK-RRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY----MM 86 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSH-HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH----HH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HH
Confidence 445678999999999999887543210000000 0000 00000123677889999999999999999885431 11
Q ss_pred CCCch----hHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 036356 321 YRNNV----IVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH-- 385 (462)
Q Consensus 321 ~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 385 (462)
..++. .+.+.+-..+...|+.+.|..+++.... .+ ..++..|...|...|++++|..++++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 11222 2233333444567888999888876542 12 235678899999999999999999987765
Q ss_pred CC--CCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 386 GI--EPR-HQHYARVVDLLARAGYSNHAFKFIMNM-------PIELR--LSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 386 g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
+. .|. ..+|..++..|...|++++|..++++. +..|. ...+..+...+...|++.+|...+.+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 222 568889999999999999999998876 21111 34667777888888999999887776643
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.91 E-value=3.4e-05 Score=56.92 Aligned_cols=96 Identities=16% Similarity=-0.060 Sum_probs=62.4
Q ss_pred cchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhh
Q 036356 83 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMD 162 (462)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 162 (462)
...+..+...+.+.|++++|...+++..+... .+...|..+...+...|++++|.+.|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-- 66 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----------------EESKYWLMKGKALYNLERYEEAVDCYNYV-- 66 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----------------CCHHHHHHHHHHHHHccCHHHHHHHHHHH--
Confidence 44556666666677777777777777766654 45556666677777777777777777764
Q ss_pred hhhhhcCCCC--CchHHHHHHHHHHhc-CCcccHHHHhhccC
Q 036356 163 YYIGKSEYRN--NVIVNTVLIDMYAKC-GSVDLAPMFFDRTL 201 (462)
Q Consensus 163 ~~~~~~~~~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~ 201 (462)
.+. .+. +...+..+..++.+. |++++|.+.+++..
T Consensus 67 ---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 67 ---INV-IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp ---HHT-SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred ---HHh-CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 222 122 455666677777777 77777777776655
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.87 E-value=1.3e-05 Score=66.66 Aligned_cols=153 Identities=10% Similarity=-0.096 Sum_probs=97.3
Q ss_pred HHHHHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh---hccCCChhhHHHHHHhh--cCC-Cc----
Q 036356 14 PLVLKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY---HLWSRTEWSAFGSFDGL--LSN-EE---- 83 (462)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~m--~~~-~~---- 83 (462)
+.........++++.+.+.++.-.+.... ....+..+ +...|++++|+..|++. ..| +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 76 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQ-----------SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD 76 (198)
T ss_dssp --------------CCCSGGGCCHHHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch
Confidence 34445555667788888888765544321 23334444 88899999999999988 333 33
Q ss_pred ------------chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChh
Q 036356 84 ------------NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAE 151 (462)
Q Consensus 84 ------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 151 (462)
..|..+..++.+.|++++|...+++..+... .+...|..+..++...|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~~~~~ 139 (198)
T 2fbn_A 77 QILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-----------------NNVKALYKLGVANMYFGFLE 139 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHHTCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------------ccHHHHHHHHHHHHHcccHH
Confidence 6778888888899999999999999988765 56778888888999999999
Q ss_pred HHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHH-HHhhcc
Q 036356 152 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAP-MFFDRT 200 (462)
Q Consensus 152 ~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m 200 (462)
+|.+.|++. ... .+.+...+..+..++...++.+++. ..+..+
T Consensus 140 ~A~~~~~~a-----l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 140 EAKENLYKA-----ASL-NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHH-----HHH-STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHH-----HHH-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999885 222 2334567777777777777666665 334433
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.86 E-value=0.00015 Score=63.08 Aligned_cols=136 Identities=10% Similarity=-0.092 Sum_probs=103.9
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCC-----ccchHHH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD-----VVMRSAM 362 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l 362 (462)
+-.+...+...|++++|.++|... .. ..|+......+...+.+.+++++|+..|+...... ...+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~-----~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAA-----PV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSS-----CC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-----Hh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 445667788999999999999883 22 23543355556668899999999999999776432 2367778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALL 430 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~ 430 (462)
-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++ ...|+...+..|.
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~ 248 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 8899999999999999999986443364 346777888899999999999999998 5567755555553
No 161
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.84 E-value=0.011 Score=53.21 Aligned_cols=176 Identities=9% Similarity=-0.031 Sum_probs=120.0
Q ss_pred cCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC-ChhHHHHHHHHhhhhhhhhcCCCC
Q 036356 94 CDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG-YAEEAVKLFPKWMDYYIGKSEYRN 172 (462)
Q Consensus 94 ~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~ 172 (462)
.+.+..++|.++++++....+ -+..+|+.--..+...| ++++++++++.+ . ...+-
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-----------------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~-----L-~~nPK 121 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-----------------AHYTVWQYRFSLLTSLNKSLEDELRLMNEF-----A-VQNLK 121 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-----H-HTTCC
T ss_pred HhCCCCHHHHHHHHHHHHhCc-----------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----H-HhCCC
Confidence 344456789999999998875 56667887777777778 599999999996 3 22334
Q ss_pred CchHHHHHHHHHHhc-C-CcccHHHHhhccCCCCcchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCcc--
Q 036356 173 NVIVNTVLIDMYAKC-G-SVDLAPMFFDRTLDKDVVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLE-- 248 (462)
Q Consensus 173 ~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~-- 248 (462)
+..+|+.--..+.+. + ++++++++++++.+.|+..|.+.- .-.-.+.+.+
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~--------------------------~R~wvl~~l~~~ 175 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA--------------------------YLHWLYSHFSTL 175 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH--------------------------HHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH--------------------------HHHHHHHHhccc
Confidence 566777777777776 6 888999999998876665544422 1111111112
Q ss_pred ------chhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC-------hhHHHHHhhHHHHHH
Q 036356 249 ------FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY-------AEEAVKLFPKWMDYY 315 (462)
Q Consensus 249 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~ 315 (462)
.++++++.++.+.+... -|...|+.....+.+.++ ++++++.+.+.+.
T Consensus 176 ~~~~~~~~~eELe~~~k~I~~dp-----------------~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~-- 236 (349)
T 3q7a_A 176 GRISEAQWGSELDWCNEMLRVDG-----------------RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH-- 236 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--
T ss_pred cccchhhHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--
Confidence 23478888888888764 578888888888877776 5777888777432
Q ss_pred HHhhCCCCchhHHHHHHHHHHhcCCc
Q 036356 316 IGKSEYRNNVIVNTVLIDMYAKCGSV 341 (462)
Q Consensus 316 ~~~~~~~p~~~~~~~li~~~~~~g~~ 341 (462)
. ..-|...|+-+-..+.+.|+.
T Consensus 237 ---~-~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 237 ---L-IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp ---H-CTTCHHHHHHHHHHHHHTTCC
T ss_pred ---h-CCCCHHHHHHHHHHHHhcCCC
Confidence 1 223567777766666666654
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00019 Score=54.46 Aligned_cols=93 Identities=9% Similarity=-0.115 Sum_probs=80.6
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWK 434 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 434 (462)
.|..+...+.+.|++++|...|++..+ ..|+ ...|..+..++.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 466778889999999999999999998 5675 788999999999999999999999998 4445 5778999999999
Q ss_pred ccCChHHHHHHHHhhhhc
Q 036356 435 IPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 435 ~~~~~~~a~~~~~~~~~~ 452 (462)
..|++++|+..+.+.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999888876543
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.0011 Score=62.29 Aligned_cols=205 Identities=10% Similarity=0.010 Sum_probs=112.9
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc---------------hHHHHHHHHHHhcCCcccHHHHhhccCCC--
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV---------------IVNTVLIDMYAKCGSVDLAPMFFDRTLDK-- 203 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 203 (462)
...+.+.|++++|++.|.+.. ....-..+. ..+..+...|.+.|++++|.+.+.+..+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLL----DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH----HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH----hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345788899999999999872 111111111 13667888999999999999888765421
Q ss_pred C-cchHHHHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCC
Q 036356 204 D-VVMRSAMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQ 282 (462)
Q Consensus 204 ~-~~~~~~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (462)
. ...... ..+.+.+-..+...|+.+.+..++........... ...
T Consensus 87 ~~~~~~~~-----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~ 132 (434)
T 4b4t_Q 87 QFAKSKTV-----------------------KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-----------RVF 132 (434)
T ss_dssp TSCHHHHH-----------------------HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-----------CCS
T ss_pred HccchHHH-----------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-----------ccH
Confidence 0 000000 00112222334455666666666665543211000 001
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC-
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD- 355 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~- 355 (462)
.-..++..+...|...|++++|..++.+.+.. ....+-.+ ...++..++..|...|++++|..++++... ++
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLRE-FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 12345666667777777777777777664322 11222222 244666667777777777777777665431 11
Q ss_pred ----ccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 356 ----VVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 356 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
...+..+...+...+++++|...|.+..+
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12344555556666777777666655543
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.0001 Score=57.50 Aligned_cols=59 Identities=8% Similarity=-0.099 Sum_probs=32.1
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
..|..+...|...|++++|...+++..+ ..|+ ...+..+..++...|++++|.+.+++.
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455555555555555555555555 3342 445555555556666666666655554
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.79 E-value=8.2e-05 Score=56.56 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HhHHH
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG--IEPR----HQHYA 395 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~ 395 (462)
...+..+...+...|++++|...|++..+ .+...+..+...|...|++++|...+++..+.. ..++ ..+|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45677788899999999999999998763 456678889999999999999999999988842 1222 67888
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHc
Q 036356 396 RVVDLLARAGYSNHAFKFIMNM-PIELRLSVRRALLSAWKI 435 (462)
Q Consensus 396 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~ 435 (462)
.+...+...|++++|.+.+++. ...|+...+..+......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998 555677666666555443
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.78 E-value=4.3e-05 Score=60.62 Aligned_cols=127 Identities=11% Similarity=-0.043 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHhcCCcchHHHHhccCCC-----CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-
Q 036356 325 VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH----GIEPR- 390 (462)
Q Consensus 325 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~- 390 (462)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|.+.+++..+. +-.+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677788889999999999999987763 22 136788899999999999999999997764 11111
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhhh
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMNM-------PIEL-RLSVRRALLSAWKIPMQQWENMLQTIRGID 451 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 451 (462)
...+..+...+...|++++|.+.+++. +..+ ....+..+...+...|+.++|...+.+.+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 457788888999999999999998876 1111 244678889999999999999988877654
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.77 E-value=0.00023 Score=54.77 Aligned_cols=97 Identities=7% Similarity=-0.141 Sum_probs=83.3
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036356 354 KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALL 430 (462)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~ 430 (462)
.+...|..+...+...|++++|...|++... ..|+ ...|..+...+...|++++|...+++. ...| +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3556788889999999999999999999988 5565 778999999999999999999999998 3334 577899999
Q ss_pred HHHHccCChHHHHHHHHhhhhc
Q 036356 431 SAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 431 ~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
..+...|++++|+..+.+.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999888876543
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.77 E-value=0.00022 Score=55.50 Aligned_cols=104 Identities=5% Similarity=-0.122 Sum_probs=82.6
Q ss_pred HhccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036356 347 FFDRTLDK---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL 421 (462)
Q Consensus 347 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 421 (462)
.|++..+. +...+..+...+.+.|++++|...|++... ..|+ ...|..+..+|.+.|++++|+..+++. .+.|
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44444432 334566677889999999999999999998 6675 778889999999999999999999998 3334
Q ss_pred -CHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 422 -RLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 422 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
+...|..+..++...|++++|+..+.+.+..
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677889999999999999999888776543
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.75 E-value=4.7e-05 Score=57.62 Aligned_cols=90 Identities=10% Similarity=-0.010 Sum_probs=49.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI 435 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 435 (462)
+..+...+.+.|++++|...|++..+ ..|+ ...|..+..++...|++++|+..+++. .+.| +...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444555556666666666666555 4443 455555555566666666666666555 3333 34455555556666
Q ss_pred cCChHHHHHHHHhhh
Q 036356 436 PMQQWENMLQTIRGI 450 (462)
Q Consensus 436 ~~~~~~a~~~~~~~~ 450 (462)
.|++++|+..+.+.+
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666665554443
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00032 Score=54.63 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=84.9
Q ss_pred CCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc----hhHHHHHHHHHHhcCCcchHHHHhccCCC--C-C
Q 036356 283 PNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDRTLD--K-D 355 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~ 355 (462)
.+...+..+...+.+.|++++|...|.+.+ ...|+ ...+..+...|...|++++|...+++..+ | +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQAL-------GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 467788888999999999999999999842 34455 67888888999999999999999988763 3 5
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ 392 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 392 (462)
...|..+..+|...|++++|...|++..+ ..|+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~ 133 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNK 133 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcH
Confidence 66788889999999999999999999998 667643
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.74 E-value=0.00025 Score=56.72 Aligned_cols=95 Identities=9% Similarity=-0.116 Sum_probs=82.4
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSA 432 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 432 (462)
...|..+...+...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44677888899999999999999999998 6674 788999999999999999999999998 4445 57789999999
Q ss_pred HHccCChHHHHHHHHhhhhc
Q 036356 433 WKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 433 ~~~~~~~~~a~~~~~~~~~~ 452 (462)
|...|++++|+..+.+.+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 99999999999888876543
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.74 E-value=0.00019 Score=54.13 Aligned_cols=94 Identities=10% Similarity=-0.000 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTLD--K-DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLA 402 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~ 402 (462)
.+..+...+.+.|++++|...|++..+ | +...|..+..++...|++++|+..|++..+ +.|+ ...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 455567788899999999999998873 4 667888899999999999999999999998 7786 678889999999
Q ss_pred hcCChHHHHHHHHhC-CCCCC
Q 036356 403 RAGYSNHAFKFIMNM-PIELR 422 (462)
Q Consensus 403 ~~g~~~~A~~~~~~m-~~~p~ 422 (462)
..|++++|...+++. ...|+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999987 55554
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.72 E-value=0.00022 Score=52.84 Aligned_cols=94 Identities=12% Similarity=-0.004 Sum_probs=80.2
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036356 357 VMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEP-RHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAW 433 (462)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~ 433 (462)
..+..+...+...|++++|...+++... ..| +...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567788889999999999999999988 456 4778888999999999999999999988 3334 577899999999
Q ss_pred HccCChHHHHHHHHhhhhc
Q 036356 434 KIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 434 ~~~~~~~~a~~~~~~~~~~ 452 (462)
...|++++|...+.+.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999888776653
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.70 E-value=0.00012 Score=69.57 Aligned_cols=122 Identities=16% Similarity=0.036 Sum_probs=62.6
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-------------hhHHHHHHHHHHhcCCcchHHHHhcc
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-------------VIVNTVLIDMYAKCGSVDLAPMFFDR 350 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (462)
....|..+...|.+.|++++|...|.+.+.. ....++ ...|..+..+|.+.|++++|...+++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4556777777777777777777777775431 111110 24444455555555555555555554
Q ss_pred CCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHH
Q 036356 351 TLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAF 411 (462)
Q Consensus 351 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 411 (462)
..+ .+...|..+..+|...|++++|...|++..+ +.|+ ...+..+..++.+.|+.++|.
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 431 2334444555555555555555555555554 4443 334444445555555554443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.69 E-value=0.00028 Score=53.62 Aligned_cols=92 Identities=13% Similarity=-0.057 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCcchHHHHhccCCC--CCcc----chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HhHHHHHHH
Q 036356 330 VLIDMYAKCGSVDLAPMFFDRTLD--KDVV----MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR----HQHYARVVD 399 (462)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~ 399 (462)
.+...+.+.|++++|...|+...+ |+.. .+..+..++...|++++|...+++..+ ..|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHHHH
Confidence 345567778888888888877652 4333 566677778888888888888888777 3444 455677777
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH
Q 036356 400 LLARAGYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 400 ~~~~~g~~~~A~~~~~~m-~~~p~~ 423 (462)
++...|++++|...+++. ...|+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 788888888888888877 333443
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.65 E-value=0.0055 Score=55.16 Aligned_cols=205 Identities=7% Similarity=-0.053 Sum_probs=142.9
Q ss_pred hHHHHHHHhhhc--CCc-chHHHHHHhhcCcc-chhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 036356 220 WSAFGSFDGLLS--NEE-NEYGTALDCSCDLE-FLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGY 295 (462)
Q Consensus 220 ~~a~~~~~~m~~--~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~ 295 (462)
++|+++++++.. |+. ..|+.--.++...+ .+++++.+++.+.+... .+...|+.---.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-----------------Kny~aW~hR~wlL 133 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-----------------KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-----------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHH
Confidence 788888888888 544 34555555555566 59999999999998652 4677788776666
Q ss_pred HcC-C-ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcc--------hHHHHhccCCC---CCccchHHH
Q 036356 296 AKN-G-YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD--------LAPMFFDRTLD---KDVVMRSAM 362 (462)
Q Consensus 296 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~---~~~~~~~~l 362 (462)
.+. + +++++++++.+++ .. -.-|-..|+--..++.+.|.++ ++.+.++++.+ .|...|+..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L-----~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R 207 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSL-----LP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR 207 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHT-----SS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHH-----Hh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 665 6 8899999998843 22 2235667776666666666666 78888887764 466677777
Q ss_pred HHHHHhcCC-------hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCh--------------------HHHHHHH
Q 036356 363 TVGYGLHGL-------GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYS--------------------NHAFKFI 414 (462)
Q Consensus 363 i~~~~~~~~-------~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~--------------------~~A~~~~ 414 (462)
...+.+.++ ++++++.+++... ..|+ ...|+-+-..+.+.|+. .+..+..
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG 285 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence 777777765 6888999998888 6776 66777766677776654 3444444
Q ss_pred HhC-CC-------CCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 036356 415 MNM-PI-------ELRLSVRRALLSAWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 415 ~~m-~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 449 (462)
.++ +. .+....+..|+..|...|+.++|+..+...
T Consensus 286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 454 22 367788899999999999999998766654
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.64 E-value=0.00025 Score=53.88 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCch---hHHHHHHHHHHhcCCcchHHHHhccCCC--CC----ccc
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV---IVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----VVM 358 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 358 (462)
+..+...+.+.|++++|...|.+.+ ..... +. ..+..+..+|.+.|++++|...|+...+ |+ ...
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~-----~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFL-----ELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-----HHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-----HHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH
Confidence 4455667778888888888888743 22211 12 4666677777888888888888877652 33 334
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 391 (462)
+..+..++...|++++|...|++..+ ..|+.
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~ 109 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVAT--QYPGS 109 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCC
Confidence 66677777788888888888888777 44653
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.61 E-value=8.1e-05 Score=71.21 Aligned_cols=114 Identities=11% Similarity=-0.066 Sum_probs=90.4
Q ss_pred hccCCChhhHHHHHHhh--c-CCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHH
Q 036356 62 HLWSRTEWSAFGSFDGL--L-SNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRN 138 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~ 138 (462)
+.+.|++++|++.|++. . +.+..+|..+..++.+.|++++|...+++..+... .+...|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----------------~~~~~~~ 78 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----------------KYIKGYY 78 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----------------TCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------------CCHHHHH
Confidence 78899999999999999 4 44578899999999999999999999999998765 5678899
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH--HHhcCCcccHHHHhh
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDM--YAKCGSVDLAPMFFD 198 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 198 (462)
.+..+|.+.|++++|++.|++. .+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~a-----l~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETV-----VKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH-----HHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-----HHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999996 3322 2234455555555 888899999999998
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=0.00013 Score=54.64 Aligned_cols=78 Identities=9% Similarity=0.079 Sum_probs=49.4
Q ss_pred cCCcchHHHHhccCCCC------CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHH
Q 036356 338 CGSVDLAPMFFDRTLDK------DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHA 410 (462)
Q Consensus 338 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 410 (462)
.|++++|...|++..+. +...|..+...|...|++++|...|++..+ ..|+ ...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHHH
Confidence 45666666666654432 234556666777777777777777777776 4554 56666777777777777777
Q ss_pred HHHHHhC
Q 036356 411 FKFIMNM 417 (462)
Q Consensus 411 ~~~~~~m 417 (462)
+..+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=5.4e-05 Score=56.81 Aligned_cols=80 Identities=16% Similarity=-0.039 Sum_probs=59.5
Q ss_pred cCCChhhHHHHHHhh--c---CC-CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeH
Q 036356 64 WSRTEWSAFGSFDGL--L---SN-EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR 137 (462)
Q Consensus 64 ~~~~~~~A~~~~~~m--~---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~ 137 (462)
..|++++|+..|++. . .| +..++..+..++.+.|++++|...|++..+..+ -+...+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~ 64 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----------------NHQALR 64 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CchHHH
Confidence 457888888888888 3 23 345777888888888888888888888888765 456777
Q ss_pred HHHHHHHHhCCChhHHHHHHHHh
Q 036356 138 NAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 138 ~~li~~~~~~g~~~~a~~~~~~m 160 (462)
..+..++.+.|++++|+..|++.
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 78888888888888888888885
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=0.00057 Score=65.09 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=71.8
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCC----chhHHHHHHHHHHhcCCcchHHHHhccCCC-------CC----cc
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KD----VV 357 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~----~~ 357 (462)
..+...|++++|+.++++.+. +...-+.| ...+++.|..+|...|++++|..++++..+ ++ ..
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~--~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLE--KQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH--HHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 346678999999999888765 22332333 245677777888888888888777765431 11 22
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKH---GIEPR----HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+++.|...|...|++++|+.++++..+- -+-|+ ..+.+.+-.++...|++++|+.++..+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666554432 11222 233344444555555555555555554
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.00036 Score=66.40 Aligned_cols=144 Identities=8% Similarity=-0.077 Sum_probs=114.0
Q ss_pred cCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC--CC----------------ccc
Q 036356 297 KNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD--KD----------------VVM 358 (462)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~ 358 (462)
..+++++|...|...+.. ..-....|..+...|.+.|++++|...|++..+ |+ ...
T Consensus 246 ~l~~~~~A~~~~~~~~~~------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEEECCCCGGGSCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence 455667777766553221 012477888899999999999999999998763 33 468
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKI 435 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 435 (462)
|..+..+|.+.|++++|+..+++..+ +.|+ ...|..+..+|...|++++|+..|++. .+.| +...+..+...+..
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999998 6675 788999999999999999999999998 6666 45578888888888
Q ss_pred cCChHHHHHHHHh
Q 036356 436 PMQQWENMLQTIR 448 (462)
Q Consensus 436 ~~~~~~a~~~~~~ 448 (462)
.++.+++...+.+
T Consensus 398 ~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 398 AKEHNERDRRIYA 410 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8988887755443
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00023 Score=52.35 Aligned_cols=97 Identities=11% Similarity=0.018 Sum_probs=79.4
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM 161 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 161 (462)
+...+..+...+.+.|++++|...|++..+..+ .+...|..+..++.+.|++++|++.|++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a- 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----------------QNPVGYSNKAMALIKLGEYTQAIQMCQQG- 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHH-
Confidence 445677888899999999999999999998865 57788889999999999999999999996
Q ss_pred hhhhhhcCCCCC-------chHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356 162 DYYIGKSEYRNN-------VIVNTVLIDMYAKCGSVDLAPMFFDRTLD 202 (462)
Q Consensus 162 ~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (462)
.. ..|+ ...+..+..++...|+.+.|...++++..
T Consensus 65 ----l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 65 ----LR--YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp ----HT--SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred ----HH--hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 22 3343 45667777888888999999888887653
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.50 E-value=0.00018 Score=57.45 Aligned_cols=119 Identities=11% Similarity=-0.103 Sum_probs=76.0
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhh-CCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHH
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS-EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 362 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 362 (462)
....+......+.+.|++++|...|.+.+...-... .-.|+...+ ..+...+...|..+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~nl 69 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELDRKNIPLYANM 69 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHHHHHHHHHHHH
Confidence 355677777788888888888888888543110000 001111100 00111233466777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS 424 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 424 (462)
..+|.+.|++++|+..+++..+ +.|+ ...|..+..+|...|++++|...+++. .+.|+..
T Consensus 70 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 70 SQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 7888888888888888888887 5565 677888888888888888888888876 5556543
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.44 E-value=0.00032 Score=55.07 Aligned_cols=58 Identities=7% Similarity=-0.064 Sum_probs=48.8
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCC-HhHH----HHHHHHHHhcCChHHHHHHHHhC
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-------EPR-HQHY----ARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.|+.+..++.+.|++++|+..+++..+ + .|+ ...| .....++...|++++|+..|++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 777888888888888888888888887 5 787 5677 88888999999999999988886
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.41 E-value=0.00017 Score=68.96 Aligned_cols=117 Identities=13% Similarity=0.052 Sum_probs=64.7
Q ss_pred HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC-chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHH
Q 036356 292 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN-NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYG 367 (462)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 367 (462)
...+.+.|++++|.+.|++.+. . .| +...|..+..+|.+.|++++|...+++..+ .+...|..+..+|.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~-----~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIE-----L--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHH-----H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-----h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3346667777777777777432 1 22 355666666666666666666666665542 23445566666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHH--HHhcCChHHHHHHHHhC
Q 036356 368 LHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDL--LARAGYSNHAFKFIMNM 417 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~~m 417 (462)
..|++++|.+.+++..+ +.|+ ...+..+..+ +.+.|++++|++.+++.
T Consensus 86 ~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 86 ALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHTCHHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 66666666666666665 3343 2333333333 55566666666666543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.41 E-value=0.00038 Score=64.09 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 364 (462)
...|..+...+.+.|++++|+..|.+.+... ... | .....+.+ ......+..+|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~--~-------------~~~~~~~~----~~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS--R-------------AAAEDADG----AKLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH--H-------------HHSCHHHH----GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC--c-------------cccChHHH----HHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777754310 000 0 00000000 0011123456777778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCChHH
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQWE 441 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 441 (462)
+|.+.|++++|++.+++..+ +.|+ ...|..+..+|...|++++|++.+++. .+.| +...+..+...+...++.++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887 5565 677788888888888888888888877 4444 45566666666666666655
Q ss_pred HH
Q 036356 442 NM 443 (462)
Q Consensus 442 a~ 443 (462)
+.
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.37 E-value=0.00057 Score=62.88 Aligned_cols=87 Identities=9% Similarity=-0.036 Sum_probs=72.8
Q ss_pred chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 036356 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVD 399 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 399 (462)
+...|..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|.+.|++..+ +.|+ ...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 457888889999999999999999998764 3566788899999999999999999999998 6675 667777777
Q ss_pred HHHhcCChHHHHH
Q 036356 400 LLARAGYSNHAFK 412 (462)
Q Consensus 400 ~~~~~g~~~~A~~ 412 (462)
.+...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877765
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00019 Score=65.34 Aligned_cols=145 Identities=10% Similarity=-0.057 Sum_probs=81.3
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHH
Q 036356 285 VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTV 364 (462)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 364 (462)
...+..+...+.+.|++++|...|.+.+. ..|+... +...|+.+++...+. ..+|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-------~~p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA-------YMGDDFM-------FQLYGKYQDMALAVK------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH-------HSCHHHH-------HTCCHHHHHHHHHHH------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------Hhccchh-------hhhcccHHHHHHHHH------HHHHHHHHH
Confidence 34466677788899999999999988532 2233221 122233333333221 236788888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHH-ccCChH
Q 036356 365 GYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRLS-VRRALLSAWK-IPMQQW 440 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~-~~~~~~ 440 (462)
+|.+.|++++|+..+++..+ +.|+ ...|..+..+|...|++++|...|++. .+.|+.. .+..+..... ..+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888 5665 778899999999999999999999998 5666433 4444444422 334445
Q ss_pred HHHHHHHhhhh
Q 036356 441 ENMLQTIRGID 451 (462)
Q Consensus 441 ~a~~~~~~~~~ 451 (462)
.+...+.+++.
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 55555555543
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.35 E-value=0.0012 Score=51.86 Aligned_cols=90 Identities=11% Similarity=-0.112 Sum_probs=72.8
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHhC-CC-----
Q 036356 359 RSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-------------HQHYARVVDLLARAGYSNHAFKFIMNM-PI----- 419 (462)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----- 419 (462)
+......+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34455667778888888888888877 5554 228899999999999999999998887 55
Q ss_pred --CCC-HHHH----HHHHHHHHccCChHHHHHHHHhhh
Q 036356 420 --ELR-LSVR----RALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 420 --~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
.|+ ...| .....++...|++++|+..+.+.+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 785 4578 899999999999999999888764
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00087 Score=49.12 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=74.6
Q ss_pred cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHH
Q 036356 234 ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMD 313 (462)
Q Consensus 234 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 313 (462)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|...|.+.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al- 65 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----------------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL- 65 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-
Confidence 3456677788889999999999999998874 2467888889999999999999999998843
Q ss_pred HHHHhhCCCCc-------hhHHHHHHHHHHhcCCcchHHHHhccCC
Q 036356 314 YYIGKSEYRNN-------VIVNTVLIDMYAKCGSVDLAPMFFDRTL 352 (462)
Q Consensus 314 ~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~ 352 (462)
...|+ ...+..+..++...|+.+.|...++++.
T Consensus 66 ------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 66 ------RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp ------TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred ------HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 33444 4556667777888888888888777664
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.29 E-value=0.0013 Score=52.27 Aligned_cols=67 Identities=10% Similarity=-0.034 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 036356 324 NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ 392 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 392 (462)
+...|..+..+|.+.|++++|...++...+ .+...|..+..+|...|++++|...|++..+ +.|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 456788888899999999999999988763 3567888899999999999999999999998 778754
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.29 E-value=0.0021 Score=61.20 Aligned_cols=132 Identities=7% Similarity=-0.062 Sum_probs=99.0
Q ss_pred hhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhc-CCCC-HhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356 243 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCR-YQPN-VTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320 (462)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (462)
.+...|++++|+.+++..++..... +| ..|+ ..+++.+..+|...|++++|+.++++.+.-.....|
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~-----------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPV-----------FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTT-----------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3567899999999998877642110 00 0232 467999999999999999999999998774444444
Q ss_pred C-CCc-hhHHHHHHHHHHhcCCcchHHHHhccCCC-------CCc----cchHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036356 321 Y-RNN-VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KDV----VMRSAMTVGYGLHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 321 ~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (462)
. .|+ ..+++.|...|...|++++|..++++..+ ||. .+.+.+-.++...+.+++|+.++.++++.
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233 57789999999999999999999887652 332 24456777888889999999999998774
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.21 E-value=0.00068 Score=61.57 Aligned_cols=82 Identities=11% Similarity=-0.042 Sum_probs=56.4
Q ss_pred hccCCChhhHHHHHHhh--cCCCcc------------------hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHH
Q 036356 62 HLWSRTEWSAFGSFDGL--LSNEEN------------------EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLL 121 (462)
Q Consensus 62 ~~~~~~~~~A~~~~~~m--~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l 121 (462)
+.+.|++++|+..|++. ..|+.. .|..+..++.+.|+++.|...+++..+...
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------- 261 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE------- 261 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-------
T ss_pred HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Confidence 88899999999999987 455433 556666666666666666666666666543
Q ss_pred HHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 122 ISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 122 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.+...|..+..+|...|++++|...|++.
T Consensus 262 ----------~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 262 ----------KNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp ----------TCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556666666666666666666666664
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.06 E-value=0.036 Score=49.56 Aligned_cols=174 Identities=8% Similarity=-0.040 Sum_probs=118.9
Q ss_pred hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC--hhHHHHHhhHHHHHHHHhhCCCCchhH
Q 036356 250 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY--AEEAVKLFPKWMDYYIGKSEYRNNVIV 327 (462)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~p~~~~ 327 (462)
+++++.+++.+.... +.+..+|+.-.-.+.+.++ +++++.++.+++ ... +-|-..
T Consensus 90 l~~EL~~~~~~L~~~-----------------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l-----~~d-prNy~A 146 (331)
T 3dss_A 90 VKAELGFLESCLRVN-----------------PKSYGTWHHRCWLLSRLPEPNWARELELCARFL-----EAD-ERNFHC 146 (331)
T ss_dssp HHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH-----HHC-TTCHHH
T ss_pred HHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH-----HhC-CCCHHH
Confidence 678888888888764 2577888887777777774 789999998854 322 236677
Q ss_pred HHHHHHHHHhcCC-cchHHHHhccCCC---CCccchHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCC
Q 036356 328 NTVLIDMYAKCGS-VDLAPMFFDRTLD---KDVVMRSAMTVGYGLH--------------GLGEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 328 ~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~p 389 (462)
|+.-..++...|. ++++...++.+.+ .|...|+.....+.+. +.++++++.+..... ..|
T Consensus 147 W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P 224 (331)
T 3dss_A 147 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDP 224 (331)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCC
Confidence 7777777778888 4888888888774 4666777655555544 457889999999888 778
Q ss_pred C-HhHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHccCChHHHHHHHHhh
Q 036356 390 R-HQHYARVVDLLARA-----------GYSNHAFKFIMNM-PIELRLSVRRALLS-----AWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 390 ~-~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~ 449 (462)
+ ...|+-+-..+.+. +.++++++.++++ ...||. .|..+-. +....+..++....+.+.
T Consensus 225 ~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 225 NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 6 56666555555544 4578888888888 666775 3443222 223456666666555544
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0012 Score=47.62 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=45.7
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 355 DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+...|..+...|...|++++|...|++..+ ..|+ ...|..+..+|...|++++|.+.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566777778888888888888888777 5565 567777788888888888888877765
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.02 E-value=0.0011 Score=49.19 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=50.2
Q ss_pred hHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 343 LAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 343 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.|...|++..+ .+...|..+...|...|++++|...|++..+ ..|+ ...|..+..+|...|++++|...+++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445544332 2445666777777778888888888887777 4454 567777777888888888888877776
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.94 E-value=0.0018 Score=47.95 Aligned_cols=74 Identities=5% Similarity=-0.112 Sum_probs=50.1
Q ss_pred hHHHHHHhh---cCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHh
Q 036356 70 SAFGSFDGL---LSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAK 146 (462)
Q Consensus 70 ~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~ 146 (462)
+|++.|++. .+.+...+..+..++...|++++|...|++..+..+ .+...|..+..++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----------------TYSVAWKWLGKTLQG 65 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----------------CcHHHHHHHHHHHHH
Confidence 556666666 333455666777777777777777777777776654 445566777777777
Q ss_pred CCChhHHHHHHHHh
Q 036356 147 NGYAEEAVKLFPKW 160 (462)
Q Consensus 147 ~g~~~~a~~~~~~m 160 (462)
.|++++|...|++.
T Consensus 66 ~g~~~~A~~~~~~a 79 (115)
T 2kat_A 66 QGDRAGARQAWESG 79 (115)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 77777777777764
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.91 E-value=0.0056 Score=42.67 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=42.8
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036356 358 MRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAWK 434 (462)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 434 (462)
.|..+...+...|++++|...+++..+ ..|+ ...+..+...+.+.|++++|.+.+++. ...| +...+..+...+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344555566666666666666666665 3343 455666666666667777776666665 2223 3444444444443
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.85 E-value=0.0026 Score=45.86 Aligned_cols=62 Identities=5% Similarity=-0.036 Sum_probs=47.8
Q ss_pred CcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 82 EENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
+...+..+..++.+.|++++|...|++..+..+ .+...|..+..+|...|++++|.+.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-----------------DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455677777778888888888888888887765 45667777888888888888888888775
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.61 E-value=0.0076 Score=56.36 Aligned_cols=81 Identities=9% Similarity=-0.089 Sum_probs=48.8
Q ss_pred cCChHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 036356 369 HGLGEEGWVLFHHIRKH---GIEPR----HQHYARVVDLLARAGYSNHAFKFIMNM---------PIELR-LSVRRALLS 431 (462)
Q Consensus 369 ~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~l~~ 431 (462)
.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666676666665442 22222 456666777777777777777766655 22333 335667777
Q ss_pred HHHccCChHHHHHHHHhh
Q 036356 432 AWKIPMQQWENMLQTIRG 449 (462)
Q Consensus 432 ~~~~~~~~~~a~~~~~~~ 449 (462)
.|..+|++++|...+.+.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 777777777776666554
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.61 E-value=0.0058 Score=42.59 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=41.0
Q ss_pred chHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 84 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
..+..+...+.+.|++++|...+++..+... .+...+..+...+.+.|++++|...|++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455566666677777777777777776644 35556666777777777777777777774
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.57 E-value=0.012 Score=55.00 Aligned_cols=86 Identities=14% Similarity=0.024 Sum_probs=49.2
Q ss_pred HHHHHhcCCcchHHHHhccCCC-------CC----ccchHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HhH
Q 036356 332 IDMYAKCGSVDLAPMFFDRTLD-------KD----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKH------GIEPR-HQH 393 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~ 393 (462)
+..+.+.|++++|..++++..+ ++ ..+++.|..+|...|++++|+.++++...- .-.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445556666666666654331 11 235566666666666666666666655432 12222 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 036356 394 YARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 394 ~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
++.|...|...|++++|+.++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 666666666666666666666665
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.49 E-value=0.00088 Score=52.47 Aligned_cols=61 Identities=11% Similarity=0.008 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcC-----------ChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 036356 372 GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAG-----------YSNHAFKFIMNM-PIELRLSVRRALLSAWK 434 (462)
Q Consensus 372 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g-----------~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~ 434 (462)
+++|+..|++..+ +.|+ ...|..+..+|...| ++++|++.|++. .+.|+...|..-+...-
T Consensus 62 ~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 62 IQEAITKFEEALL--IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6788888888888 7787 678888888888764 788898888887 67787776665555443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.49 E-value=0.013 Score=44.99 Aligned_cols=111 Identities=9% Similarity=-0.077 Sum_probs=68.3
Q ss_pred ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchh
Q 036356 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 326 (462)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 326 (462)
.+++++|.+.|+...+.|. |+.. +-..|...+.+++|.+.|.+. .+.| +..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-----------------~~a~----lg~~y~~g~~~~~A~~~~~~A-----a~~g---~~~ 58 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-----------------MFGC----LSLVSNSQINKQKLFQYLSKA-----CELN---SGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----------------TTHH----HHHHTCTTSCHHHHHHHHHHH-----HHTT---CHH
T ss_pred ccCHHHHHHHHHHHHcCCC-----------------Hhhh----HHHHHHcCCCHHHHHHHHHHH-----HcCC---CHH
Confidence 4567788888888877763 3333 445566666777788888773 3332 345
Q ss_pred HHHHHHHHHHh----cCCcchHHHHhccCCC-CCccchHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 036356 327 VNTVLIDMYAK----CGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGEEGWVLFHHIRKHG 386 (462)
Q Consensus 327 ~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 386 (462)
.+..|-..|.. .++.++|..+|++..+ -+...+..|...|.. .++.++|.++|++..+.|
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55566666665 5666666666665542 345555556666665 566666666666666654
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.41 E-value=0.059 Score=52.45 Aligned_cols=165 Identities=10% Similarity=0.011 Sum_probs=118.3
Q ss_pred hHHHHHHHhhhc--CCc-chHHHHHHhhcCccc----------hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHh
Q 036356 220 WSAFGSFDGLLS--NEE-NEYGTALDCSCDLEF----------LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286 (462)
Q Consensus 220 ~~a~~~~~~m~~--~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (462)
++|++.++++.. |+. ..|+.--.++.+.++ ++++.+.++.+.+... -+..
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-----------------K~y~ 108 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-----------------KSYG 108 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-----------------TCHH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-----------------CCHH
Confidence 677777777777 443 344444444444455 8999999999998752 5778
Q ss_pred HHHHHHHHHHcCC--ChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcC-CcchHHHHhccCCCC---CccchH
Q 036356 287 LWNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCG-SVDLAPMFFDRTLDK---DVVMRS 360 (462)
Q Consensus 287 ~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~ 360 (462)
+|+.---.+.+.+ +++++++.+++++. .. .-+-..|+.-..++.+.| ..+++.+.++++.+. |...|+
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~-----~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLE-----AD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHH-----HC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHh-----hc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 8888888888889 66999999999543 32 236778887777788888 788999999988863 555677
Q ss_pred HHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHH
Q 036356 361 AMTVGYGLH--------------GLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNH 409 (462)
Q Consensus 361 ~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 409 (462)
.....+.+. +.++++++.+++... +.|+ ...|.-+-..+.+.++.++
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 666655552 456888888888887 6676 6677777777777666444
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.014 Score=54.51 Aligned_cols=52 Identities=6% Similarity=-0.032 Sum_probs=27.9
Q ss_pred cCCChhHHHHHhhHHHHHHHHhhCCCCc----hhHHHHHHHHHHhcCCcchHHHHhcc
Q 036356 297 KNGYAEEAVKLFPKWMDYYIGKSEYRNN----VIVNTVLIDMYAKCGSVDLAPMFFDR 350 (462)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 350 (462)
+.|++++|+.++++.+. +...-+.|+ ..+++.|..+|...|++++|..++++
T Consensus 310 ~~g~~~eA~~~~~~~L~--i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~ 365 (433)
T 3qww_A 310 HYKSPSELLEICELSQE--KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK 365 (433)
T ss_dssp TTSCHHHHHHHHHHHHH--HHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH--HhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 34667777777776554 222222222 34555556666666666665555543
No 208
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.30 E-value=0.13 Score=45.82 Aligned_cols=180 Identities=6% Similarity=-0.130 Sum_probs=123.1
Q ss_pred hccCCChh-hHHHHHHhh--cCCCc-chHHHHHHhhcCccc----------hhhHHHHHHHHHHhcCCcchhHHHHHhhh
Q 036356 62 HLWSRTEW-SAFGSFDGL--LSNEE-NEYGTALDCSCDLEF----------LEQGKIVHGFMIKLGLELESDLLISLTAV 127 (462)
Q Consensus 62 ~~~~~~~~-~A~~~~~~m--~~~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~l~~~~~~ 127 (462)
..+.|.+. +|++++..+ ..|+. .+|+.--.++...+. ++++..+++.+....+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P------------- 105 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP------------- 105 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-------------
Confidence 34455555 799999999 55544 456655444443333 6789999999998875
Q ss_pred cCCCCCeeeHHHHHHHHHhCC--ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC-cccHHHHhhccCC--
Q 036356 128 CRYQPNVTLRNAMISGYAKNG--YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS-VDLAPMFFDRTLD-- 202 (462)
Q Consensus 128 ~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~-- 202 (462)
.+..+|+.-...+.+.| ++++++.+++.+ ... -+-|...|+--...+...|. ++++++.++++.+
T Consensus 106 ----Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~-----l~~-dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 106 ----KSYGTWHHRCWLLSRLPEPNWARELELCARF-----LEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp ----TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-----HHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHHhccCcccHHHHHHHHHHH-----HHh-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 67888888777777777 489999999997 332 34467777777777778888 4888888888764
Q ss_pred -CCcchHHHHHHHHHhC--------------c--hHHHHHHHhhhc--C-CcchHHHHHHhhcCc-----------cchh
Q 036356 203 -KDVVMRSAMIVGYGLH--------------E--WSAFGSFDGLLS--N-EENEYGTALDCSCDL-----------EFLE 251 (462)
Q Consensus 203 -~~~~~~~~li~~~~~~--------------~--~~a~~~~~~m~~--~-~~~~~~~ll~~~~~~-----------~~~~ 251 (462)
.|...|+.....+... + +++++.+.+... | |...|+-+-..+.+. +.++
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 4556666554443332 3 678888888777 5 445555443333333 4578
Q ss_pred hhHHHHHHHHHhC
Q 036356 252 QGKIVHGFMIKLG 264 (462)
Q Consensus 252 ~a~~~~~~~~~~~ 264 (462)
++++.++++.+..
T Consensus 256 ~el~~~~elle~~ 268 (331)
T 3dss_A 256 SELESCKELQELE 268 (331)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 8888888888753
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.18 E-value=0.0034 Score=49.12 Aligned_cols=98 Identities=5% Similarity=-0.111 Sum_probs=76.5
Q ss_pred ccCCChhhHHHHHHhh---cCCCcchHHHHHHhhcCccch----------hhHHHHHHHHHHhcCCcchhHHHHHhhhcC
Q 036356 63 LWSRTEWSAFGSFDGL---LSNEENEYGTALDCSCDLEFL----------EQGKIVHGFMIKLGLELESDLLISLTAVCR 129 (462)
Q Consensus 63 ~~~~~~~~A~~~~~~m---~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~ 129 (462)
.+.+.+++|+..++.. .+.+...|..+..++.+.+++ ++|+..|++.++..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--------------- 77 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--------------- 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---------------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc---------------
Confidence 4456788999999988 445677888888888888765 599999999999876
Q ss_pred CCCCeeeHHHHHHHHHhCC-----------ChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHH
Q 036356 130 YQPNVTLRNAMISGYAKNG-----------YAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMY 184 (462)
Q Consensus 130 ~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~ 184 (462)
-+...|..+..+|...| ++++|++.|++- ..+.|+...|...+...
T Consensus 78 --~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA-------l~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 78 --KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA-------VDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp --TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------HHHCTTCHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH-------HHhCCCCHHHHHHHHHH
Confidence 56778999999998764 899999999884 34577777776555543
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.18 E-value=0.037 Score=53.88 Aligned_cols=168 Identities=8% Similarity=-0.066 Sum_probs=124.5
Q ss_pred ccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCC----------hhHHHHHhhHHHHHHH
Q 036356 247 LEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGY----------AEEAVKLFPKWMDYYI 316 (462)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~ 316 (462)
....++|.+.++.+.+... -+...|+.--..+.+.|+ ++++++.++..+
T Consensus 42 ~~~~eeal~~~~~~l~~nP-----------------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l---- 100 (567)
T 1dce_A 42 GELDESVLELTSQILGANP-----------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL---- 100 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHCc-----------------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH----
Confidence 3445678999999988752 356677776666666666 889999998853
Q ss_pred HhhCCCCchhHHHHHHHHHHhcC--CcchHHHHhccCCC---CCccchHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCC
Q 036356 317 GKSEYRNNVIVNTVLIDMYAKCG--SVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHG-LGEEGWVLFHHIRKHGIEPR 390 (462)
Q Consensus 317 ~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~ 390 (462)
... +-+..+|+.-..++.+.| +++++...++++.+ .|..+|+.-...+.+.| .++++++.++++.+ ..|+
T Consensus 101 -~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~ 176 (567)
T 1dce_A 101 -RVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFS 176 (567)
T ss_dssp -HHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCC
T ss_pred -HhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCC
Confidence 222 235678888788888889 66999999998874 46667877777777888 88999999999988 5565
Q ss_pred -HhHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHccCCh
Q 036356 391 -HQHYARVVDLLARA--------------GYSNHAFKFIMNM-PIEL-RLSVRRALLSAWKIPMQQ 439 (462)
Q Consensus 391 -~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 439 (462)
...|+.....+.+. +.+++|++.+++. ...| |...|..+-..+...+..
T Consensus 177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 77888777776663 5578898888877 4445 677888777777766653
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.10 E-value=0.0078 Score=46.35 Aligned_cols=106 Identities=6% Similarity=-0.149 Sum_probs=58.7
Q ss_pred CChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccchHHHHHHHHh----cCChH
Q 036356 299 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMTVGYGL----HGLGE 373 (462)
Q Consensus 299 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~ 373 (462)
+++++|.+.|.+ ..+.|. |+.. |-..|...+.+++|.++|++..+ -+...+..|-..|.. .++++
T Consensus 9 ~d~~~A~~~~~~-----aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVK-----ACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHH-----HHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHH-----HHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHH
Confidence 356667777766 334442 2222 44455555556666666665442 345555555556655 56666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHhC
Q 036356 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLAR----AGYSNHAFKFIMNM 417 (462)
Q Consensus 374 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 417 (462)
+|.++|++..+.| +...+..|...|.. .+++++|.+++++.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 6666666666543 34455555555555 56666666666554
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.01 E-value=0.039 Score=51.63 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=71.2
Q ss_pred HHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC----chhHHHHHHHHHHhcCCcchHHHHhccCCC-------CC----
Q 036356 291 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-------KD---- 355 (462)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~---- 355 (462)
.+..+.+.|++++|+.++++.+. ....-+.| ...+++.+..+|...|++++|..++++..+ ++
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~--~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIIS--SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--CSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHH--hccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 35567788999999999988543 11222333 256889999999999999999999987652 22
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 356 VVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
..+++.|...|...|++++|+.++++..+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34788999999999999999999988665
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.92 E-value=0.34 Score=45.13 Aligned_cols=195 Identities=11% Similarity=0.009 Sum_probs=98.7
Q ss_pred eehhh---hccCCChhhHHHHHHhhcCCCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhH-HHHHhhhcC---
Q 036356 57 FLDLY---HLWSRTEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDL-LISLTAVCR--- 129 (462)
Q Consensus 57 ~~~~~---~~~~~~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-l~~~~~~~~--- 129 (462)
.|..+ ....++..+|++.|-+. .|+..|..+|.++.+.|.++.-...+...++..-+..-|+ |+-+|+|.+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHH
Confidence 44444 44445555555443322 3444555666666666666665555554443322112222 566666655
Q ss_pred ------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHhh---------------hhhhhhcCCCCCchHHHHHHHHHHhcC
Q 036356 130 ------YQPNVTLRNAMISGYAKNGYAEEAVKLFPKWM---------------DYYIGKSEYRNNVIVNTVLIDMYAKCG 188 (462)
Q Consensus 130 ------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~---------------~~~~~~~~~~~~~~~~~~li~~~~~~g 188 (462)
..||..-...+.+-|...|.++.|.-+|..+. ...+....-..++.||-.+-.+|...+
T Consensus 134 elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 134 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 213 (624)
T ss_dssp TTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC
T ss_pred HHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch
Confidence 34566566666666666666666666655542 000111111234556666666666655
Q ss_pred CcccH------------------------------HHHhhccC---CCCcchHHHHHHHHHhCc-hHHHHHHHhhhc---
Q 036356 189 SVDLA------------------------------PMFFDRTL---DKDVVMRSAMIVGYGLHE-WSAFGSFDGLLS--- 231 (462)
Q Consensus 189 ~~~~a------------------------------~~~~~~m~---~~~~~~~~~li~~~~~~~-~~a~~~~~~m~~--- 231 (462)
++..| +.+++.-. +...-.++-|.-.|++-. ++.++.++-.-.
T Consensus 214 EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriN 293 (624)
T 3lvg_A 214 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 293 (624)
T ss_dssp TTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSC
T ss_pred HHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 55543 33333221 234446777777788777 666655554433
Q ss_pred --------CCcchHHHHHHhhcCccchhhh
Q 036356 232 --------NEENEYGTALDCSCDLEFLEQG 253 (462)
Q Consensus 232 --------~~~~~~~~ll~~~~~~~~~~~a 253 (462)
.....|..++-.|++-.+++.|
T Consensus 294 ipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 294 IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp CTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 2344455555555555555444
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.86 E-value=0.014 Score=41.56 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 362 MTVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQ-HYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
....+...|++++|...+++..+ ..|+ .. .|..+..+|...|++++|.+.+++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566778888888888888877 4565 45 7777777888888888888888876
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.81 E-value=0.00033 Score=64.52 Aligned_cols=140 Identities=10% Similarity=-0.041 Sum_probs=101.6
Q ss_pred chHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCC
Q 036356 206 VMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQP 283 (462)
Q Consensus 206 ~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 283 (462)
..|+.+.++....+ .+|++.|-+. .|...|..++.++.+.|.+++-.+.+...++.. .
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~------------------k 114 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA------------------R 114 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC------------------C
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh------------------c
Confidence 45667777766666 5555554433 566677888999999999999998888776653 3
Q ss_pred CHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC----------
Q 036356 284 NVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---------- 353 (462)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 353 (462)
+...=+.|+-+|++.++..+-++++. .||..-...+.+-|...|.++.|.-+|..+..
T Consensus 115 e~~IDteLi~ayAk~~rL~elEefl~------------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~ 182 (624)
T 3lvg_A 115 ESYVETELIFALAKTNRLAELEEFIN------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH 182 (624)
T ss_dssp STTTTHHHHHHHHTSCSSSTTTSTTS------------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSS
T ss_pred ccccHHHHHHHHHhhCcHHHHHHHHc------------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHH
Confidence 44455678889999999887555543 36666666778888888999888888876531
Q ss_pred --------------CCccchHHHHHHHHhcCChHHHHH
Q 036356 354 --------------KDVVMRSAMTVGYGLHGLGEEGWV 377 (462)
Q Consensus 354 --------------~~~~~~~~li~~~~~~~~~~~a~~ 377 (462)
.++.||-.+-.+|...+.+..|.-
T Consensus 183 L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 183 LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp CSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHH
Confidence 477899998889988888765543
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.76 E-value=0.13 Score=52.60 Aligned_cols=101 Identities=16% Similarity=0.028 Sum_probs=66.8
Q ss_pred HHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 036356 295 YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEE 374 (462)
Q Consensus 295 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 374 (462)
....|++++|+++.+. -.+...|..+.+.+.+.|+++.|.+.|.++.. |..+...|...|+.+.
T Consensus 662 ~l~~~~~~~A~~~~~~-----------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-----------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHTCHHHHHHHHTT-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHH
T ss_pred hhhcCCHHHHHHHHHh-----------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHH
Confidence 4556778887777654 24567888888888888888888888887755 5566666666777766
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 375 GWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 375 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
..++-+.....|- ++....+|.+.|++++|++++.++
T Consensus 726 ~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 726 LVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6666555555332 233344455566666666666665
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.46 E-value=0.069 Score=48.10 Aligned_cols=139 Identities=9% Similarity=-0.007 Sum_probs=92.3
Q ss_pred CCCHhHHHHHHHHHHc--CC---ChhHHHHHhhHHHHHHHHhhCCCCc-hhHHHHHHHHHHh---cCCcc--------hH
Q 036356 282 QPNVTLWNAMISGYAK--NG---YAEEAVKLFPKWMDYYIGKSEYRNN-VIVNTVLIDMYAK---CGSVD--------LA 344 (462)
Q Consensus 282 ~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g~~~--------~A 344 (462)
+.+...|...+.+... .+ ...+|..+|++.+. ..|+ ...|..+..+|.- .+.+. .+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~-------lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ-------SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 3567778777766442 23 35789999988432 3454 3344433333321 11111 12
Q ss_pred HHHhccCC--CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036356 345 PMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL 421 (462)
Q Consensus 345 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 421 (462)
.+-...+. ..+..+|..+...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.+++. .+.|
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22111221 346677888877777889999999999999994 588888888889999999999999999887 6678
Q ss_pred CHHHHHHH
Q 036356 422 RLSVRRAL 429 (462)
Q Consensus 422 ~~~~~~~l 429 (462)
...+|...
T Consensus 342 ~~~t~~~~ 349 (372)
T 3ly7_A 342 GANTLYWI 349 (372)
T ss_dssp SHHHHHHH
T ss_pred CcChHHHH
Confidence 87776543
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.73 Score=36.55 Aligned_cols=128 Identities=11% Similarity=-0.028 Sum_probs=94.7
Q ss_pred HHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCCh
Q 036356 293 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLG 372 (462)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 372 (462)
....+.|+++.|.++.+. + .+...|..|.+...+.|+++-|.+.|.+..+ +..+.-.|...|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~-----l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKK-----L------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHH-----H------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHH-----h------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCH
Confidence 345678999999999776 2 4578999999999999999999999998865 77788888889998
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 373 EEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
+...++-+....+| -++.-...+.-.|+++++.+++.+.+.-|....+ ....|..+.|...+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHH
Confidence 87776666655544 3566667777889999999999998654432221 1224555556555444
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.15 E-value=0.067 Score=37.68 Aligned_cols=58 Identities=10% Similarity=-0.029 Sum_probs=33.4
Q ss_pred chHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 358 MRSAMTVGYGLHGL---GEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 358 ~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
.+..+..++...++ .++|..++++..+ ..|+ ......+...+.+.|++++|+..|+++
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433332 4666666666666 5555 455556666666666666666666665
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.78 E-value=0.52 Score=42.47 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHHHhcCCcchHHHHhccCC--CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 036356 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTL--DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYAR 396 (462)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 396 (462)
..+..+|..+...+...|++++|...+++.. .|+...|..+...+.-.|++++|.+.+++... +.|...+|.-
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 4567788887777777899999999999887 46655666777888899999999999999998 7888877643
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.28 E-value=0.053 Score=38.32 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=38.6
Q ss_pred HHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee-eHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT-LRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
...+.+.|++++|...+++..+... .+.. .|..+..++...|++++|.+.|++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-----------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-----------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-----------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566778888888888777654 4455 6777777777888888888888775
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.50 E-value=0.17 Score=36.37 Aligned_cols=64 Identities=3% Similarity=-0.136 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-----C-CCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036356 360 SAMTVGYGLHGLGEEGWVLFHHIRKHG-----I-EPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~g-----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 423 (462)
-.|...+.+.++++.|...|+...+.- . .+....+..|..++.+.|++++|...+++. .+.|+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 356677777888888888887766641 1 123567788888888888888888888887 455654
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.43 E-value=0.24 Score=34.73 Aligned_cols=63 Identities=8% Similarity=-0.047 Sum_probs=45.6
Q ss_pred CCcchHHHHHHhhcCccc---hhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHH
Q 036356 81 NEENEYGTALDCSCDLEF---LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLF 157 (462)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 157 (462)
.|...+..+..++...++ .++|..++++..+..+ -++.....+...+.+.|++++|+..|
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-----------------~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-----------------YNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-----------------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555566665543332 6888888888888765 56677777778888888888888888
Q ss_pred HHh
Q 036356 158 PKW 160 (462)
Q Consensus 158 ~~m 160 (462)
+.+
T Consensus 67 ~~~ 69 (93)
T 3bee_A 67 VLL 69 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.26 E-value=0.9 Score=46.23 Aligned_cols=133 Identities=12% Similarity=-0.020 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYG 367 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 367 (462)
...++..+.+.|.+++|+++.++..+ -.......|+++.|.++.+.+. +...|..|...+.
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~~~-----------------~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al 692 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQDQ-----------------KFELALKVGQLTLARDLLTDES--AEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCHHH-----------------HHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCcch-----------------heehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHH
Confidence 36777788888999998887754110 1234567899999999988773 5578999999999
Q ss_pred hcCChHHHHHHHHHHHHCC-------CCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 036356 368 LHGLGEEGWVLFHHIRKHG-------IEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQW 440 (462)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~g-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~ 440 (462)
+.++++.|.+.|..+..-. ..-+..-...+.......|+++.|..++-..+. +...++.|...++++
T Consensus 693 ~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~------~~~a~~~~~~~~~~~ 766 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGD------IQGAKDLLIKSQRFS 766 (814)
T ss_dssp HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCC------HHHHHHHHHHcCChH
Confidence 9999999999999875410 011223334455555556666666666555431 344556666666666
Q ss_pred HHHHH
Q 036356 441 ENMLQ 445 (462)
Q Consensus 441 ~a~~~ 445 (462)
+|+..
T Consensus 767 ~A~~l 771 (814)
T 3mkq_A 767 EAAFL 771 (814)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.36 E-value=0.058 Score=41.71 Aligned_cols=85 Identities=8% Similarity=-0.108 Sum_probs=65.1
Q ss_pred CccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCC---ChhHHHHHHHHhhhhhhhhcCCC
Q 036356 95 DLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNG---YAEEAVKLFPKWMDYYIGKSEYR 171 (462)
Q Consensus 95 ~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~ 171 (462)
....+..+++-|.+..+.|. ++..+...+..++++.+ ++++++.+|++. .+.. .
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~-----------------~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l-----l~~~-~ 66 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGS-----------------VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL-----LPKG-S 66 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH-----HHHS-C
T ss_pred CHHHHHHHHHHHHHHHccCC-----------------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-----HhcC-C
Confidence 34456677788887777775 78888888889999988 677999999997 4443 2
Q ss_pred C--CchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356 172 N--NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 202 (462)
Q Consensus 172 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (462)
| +...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 67 p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 67 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3 234445577788999999999999998873
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.63 E-value=0.93 Score=33.93 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=92.9
Q ss_pred eHHHHHHH--HHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC-Cc---chHH
Q 036356 136 LRNAMISG--YAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DV---VMRS 209 (462)
Q Consensus 136 ~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~---~~~~ 209 (462)
+...|+.+ +.-.|.+++..++..+. ... .+..-||-+|--....-+-+-..++++.+-+- |. ...-
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~-----~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlK 78 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEI-----TKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLK 78 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH-----cCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHH
Confidence 34455655 55678888888888886 221 23445565665555566666666666655421 11 1233
Q ss_pred HHHHHHHhCchHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH
Q 036356 210 AMIVGYGLHEWSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN 289 (462)
Q Consensus 210 ~li~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (462)
.++.+|.+.+ .+...+...+..+...|.-+.-.+++..+.... +|+....-
T Consensus 79 rVi~C~~~~n------------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-----------------~~~~~~l~ 129 (172)
T 1wy6_A 79 SVVECGVINN------------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-----------------EVSASILV 129 (172)
T ss_dssp HHHHHHHHTT------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-----------------CSCHHHHH
T ss_pred HHHHHHHHhc------------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-----------------CCChHHHH
Confidence 4556665554 455566677777788888888888888764432 47777778
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (462)
.+..+|.+.|+..+|.+++.+ .-+.|+
T Consensus 130 kia~Ay~Klg~~r~a~eLl~~-----AC~kG~ 156 (172)
T 1wy6_A 130 AIANALRRVGDERDATTLLIE-----ACKKGE 156 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----HHHTTC
T ss_pred HHHHHHHHhcchhhHHHHHHH-----HHHhhh
Confidence 888888888888888888887 445555
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.39 E-value=0.56 Score=36.20 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=34.8
Q ss_pred CchhHHHHHHHHHHhcC---CcchHHHHhccCCC---C--CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036356 323 NNVIVNTVLIDMYAKCG---SVDLAPMFFDRTLD---K--DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPR 390 (462)
Q Consensus 323 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 390 (462)
++..+...+..++.+.+ +++++..+|+...+ | +...+-.|.-+|.+.|++++|.+.++.+.+ +.|+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 45555555555555555 44455555555442 1 123334445555666666666666666665 5554
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.10 E-value=0.37 Score=34.50 Aligned_cols=70 Identities=9% Similarity=-0.081 Sum_probs=53.0
Q ss_pred CCcchHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHh
Q 036356 81 NEENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
.+...+..+...+.+.++++.|...|+...+.-.+ .++ +..+...++..|..++.+.|+++.|+..+++.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~-~~~---------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDE-GEI---------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCC---------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhc-cCC---------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34556778888899999999999999998875310 000 00245567889999999999999999999985
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.36 E-value=0.89 Score=39.32 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=55.5
Q ss_pred hHHHHhccCCC--CC---ccchHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhc-CChHH
Q 036356 343 LAPMFFDRTLD--KD---VVMRSAMTVGYGL-----HGLGEEGWVLFHHIRKHGIEPR--HQHYARVVDLLARA-GYSNH 409 (462)
Q Consensus 343 ~A~~~~~~~~~--~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~-g~~~~ 409 (462)
.|...+++..+ |+ ...|..|...|.+ .|+.++|.+.|++..+ +.|+ ..++..+.+.++.. |+.++
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45555555543 43 4478888888888 4888999999999888 7784 67778888888884 88899
Q ss_pred HHHHHHhC
Q 036356 410 AFKFIMNM 417 (462)
Q Consensus 410 A~~~~~~m 417 (462)
|.+.+++.
T Consensus 259 a~~~L~kA 266 (301)
T 3u64_A 259 FDEALDRA 266 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888887
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.19 E-value=0.59 Score=42.91 Aligned_cols=73 Identities=5% Similarity=-0.071 Sum_probs=54.6
Q ss_pred HHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhc
Q 036356 89 ALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 168 (462)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 168 (462)
++..+...|+.+.+...+..+....+ -+...|..+|.++.+.|+..+|++.|+........+.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P-----------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHP-----------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34455667788888887777776654 5777888899999999999999988888755445667
Q ss_pred CCCCCchHHH
Q 036356 169 EYRNNVIVNT 178 (462)
Q Consensus 169 ~~~~~~~~~~ 178 (462)
|+.|+..+-.
T Consensus 240 G~~P~~~l~~ 249 (388)
T 2ff4_A 240 GIDPGPTLRA 249 (388)
T ss_dssp SCCCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 8888776543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.76 E-value=1.5 Score=37.94 Aligned_cols=94 Identities=4% Similarity=-0.079 Sum_probs=70.4
Q ss_pred hhhHHHHHHhh--cCCC---cchHHHHHHhhcCc-----cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeH
Q 036356 68 EWSAFGSFDGL--LSNE---ENEYGTALDCSCDL-----EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLR 137 (462)
Q Consensus 68 ~~~A~~~~~~m--~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~ 137 (462)
...|...+++. ..|+ -..|..+...|.+. |+.++|.+.|++.++.++ .-+..++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP----------------~~~id~~ 242 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS----------------AHDPDHH 242 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC----------------TTCSHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC----------------CCCchHH
Confidence 35566666666 6666 45788888888884 899999999999999865 3357778
Q ss_pred HHHHHHHHhC-CChhHHHHHHHHhhhhhhhhcCCC--CCchHHHHHHH
Q 036356 138 NAMISGYAKN-GYAEEAVKLFPKWMDYYIGKSEYR--NNVIVNTVLID 182 (462)
Q Consensus 138 ~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~--~~~~~~~~li~ 182 (462)
......+++. |+.++|.+.+++- ...... |+....|.+-+
T Consensus 243 v~YA~~l~~~~gd~~~a~~~L~kA-----L~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFDEALDRA-----LAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHH-----HHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-----HcCCCCCCCChhHHHHHHH
Confidence 8888888884 9999999999996 565555 66655554433
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.68 E-value=2.5 Score=33.51 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=54.3
Q ss_pred HHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 036356 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFK 412 (462)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 412 (462)
+.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455789999998887766 4567899999999999999999999988764 3455555566677666555
Q ss_pred HHHhC
Q 036356 413 FIMNM 417 (462)
Q Consensus 413 ~~~~m 417 (462)
+-+..
T Consensus 82 la~iA 86 (177)
T 3mkq_B 82 MQNIA 86 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.56 E-value=1.5 Score=43.69 Aligned_cols=124 Identities=13% Similarity=0.045 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCC-hhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCc-chHHHHhccCC-----------CC
Q 036356 288 WNAMISGYAKNGY-AEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSV-DLAPMFFDRTL-----------DK 354 (462)
Q Consensus 288 ~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~-----------~~ 354 (462)
-..++..+...++ .+.|.++|++ +.......+......++..+...++- -+|.+++.+.. ..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~-----L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~ 325 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKG-----LTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPR 325 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHH-----HHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHcccccHHHHHHHHHHH-----HHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence 3445555555666 5789999988 44443322333333344443333321 13343333221 12
Q ss_pred Cccc-----h-HHH----HHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036356 355 DVVM-----R-SAM----TVGYGLHGLGEEGWVLFHHIRKHGIEPR-HQHYARVVDLLARAGYSNHAFKFIMNMP 418 (462)
Q Consensus 355 ~~~~-----~-~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 418 (462)
+... + ..| ..-|...|+++.|+++-++... +.|+ ..+|..|...|...|+++.|+-.++-++
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 2110 1 112 2345568999999999999988 8887 7899999999999999999999999884
No 234
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.88 E-value=9.7 Score=30.89 Aligned_cols=121 Identities=13% Similarity=0.050 Sum_probs=69.5
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHH
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l 211 (462)
++...-...+.++.+.|+.+..-.+.+.+ -.++..+-...+.++.+.|+.+....+.+.+.+++...-...
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l---------~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a 132 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAVEPLIKAL---------KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAA 132 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT---------TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 45555555566666666543333333222 235566666677777777776655555555556666666666
Q ss_pred HHHHHhCc-hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356 212 IVGYGLHE-WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262 (462)
Q Consensus 212 i~~~~~~~-~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 262 (462)
+.++...+ .++...+.++.. ++..+-...+.++.+.+. ..+...+..+.+
T Consensus 133 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 133 AFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 66666666 556665555555 666666666666666554 344444444444
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=87.76 E-value=6 Score=29.69 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHh-C-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCC
Q 036356 391 HQHYARVVDLLARAGYSNHAFKFIMN-M-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGE 454 (462)
Q Consensus 391 ~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 454 (462)
.......++.+..+|+-++-.++..+ . ..+|++...-.+..||.+.|+..+|-+.+.+.-+.|.
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444455555556666666666655 2 3445555556666666666666666555555554443
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.60 E-value=2.1 Score=32.72 Aligned_cols=109 Identities=8% Similarity=-0.068 Sum_probs=74.1
Q ss_pred chhHHHHHHHHHHhcCCc------chHHHHhccCC---CCC-ccchHHHHHHHH------hcCChHHHHHHHHHHHHCCC
Q 036356 324 NVIVNTVLIDMYAKCGSV------DLAPMFFDRTL---DKD-VVMRSAMTVGYG------LHGLGEEGWVLFHHIRKHGI 387 (462)
Q Consensus 324 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~---~~~-~~~~~~li~~~~------~~~~~~~a~~~~~~m~~~g~ 387 (462)
|..+|-..+....+.|+. ++..++|++.. .|+ ...|...|..+. ..++.++|.++|+.+.+.+-
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 567787888888888888 67777777554 122 334555554332 34788899999999977533
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036356 388 EPRHQHYARVVDLLARAGYSNHAFKFIMNM-PIEL-RLSVRRALLSAW 433 (462)
Q Consensus 388 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~ 433 (462)
.- ...|....+--.++|++..|.+++... |..| +.....+.++-+
T Consensus 92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 33 777777777778899999999999887 4444 344555555543
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.53 E-value=2.4 Score=38.85 Aligned_cols=75 Identities=7% Similarity=0.008 Sum_probs=61.5
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHH
Q 036356 238 GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIG 317 (462)
Q Consensus 238 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 317 (462)
..++.++...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|++.|.+.......
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-----------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-----------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445667778899999999888887764 358889999999999999999999999886665566
Q ss_pred hhCCCCchhHHH
Q 036356 318 KSEYRNNVIVNT 329 (462)
Q Consensus 318 ~~~~~p~~~~~~ 329 (462)
+.|+.|+..+-.
T Consensus 238 eLG~~P~~~l~~ 249 (388)
T 2ff4_A 238 DLGIDPGPTLRA 249 (388)
T ss_dssp HHSCCCCHHHHH
T ss_pred HhCCCCCHHHHH
Confidence 789999877644
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.82 E-value=12 Score=32.80 Aligned_cols=132 Identities=8% Similarity=-0.007 Sum_probs=73.2
Q ss_pred HHHHhhhcCCCCCeeeHHHHHHHHHhCCChh-HHHHHHHHhhhhhhhhcC-CCCCchHHHHHHHHHHhcCCcccHHHHhh
Q 036356 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAE-EAVKLFPKWMDYYIGKSE-YRNNVIVNTVLIDMYAKCGSVDLAPMFFD 198 (462)
Q Consensus 121 l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 198 (462)
+++.|.+.+.+++.....-++..+.....-+ .-.++.+.+..+.....+ ..-|......+...|.+.|++.+|+.-|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4444444444788777777777766633221 234445554333222222 23467888899999999999999999776
Q ss_pred ccCCCCcchHHHHHHHHHhC---c-hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356 199 RTLDKDVVMRSAMIVGYGLH---E-WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262 (462)
Q Consensus 199 ~m~~~~~~~~~~li~~~~~~---~-~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 262 (462)
.-...+...+..++.-+... + ..-..+| .-.. +--|.-.++...|..+++...+
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf---------~~Ra-VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF---------FSRL-VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH---------HHHH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchHHHH---------HHHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 33222455555555443332 3 1111111 1111 2223356777888887776654
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.83 E-value=9.2 Score=35.66 Aligned_cols=258 Identities=10% Similarity=-0.033 Sum_probs=142.1
Q ss_pred CChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCC---cchHHHHHHHHH----hCc-
Q 036356 148 GYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKD---VVMRSAMIVGYG----LHE- 219 (462)
Q Consensus 148 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~----~~~- 219 (462)
|+++.|++.+-.+....-..............++..|...|+++...+.+..+.+.. ......++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 667778777655410000112234445667778888888888888766554433221 111222222221 111
Q ss_pred ---hHHHHHHHhhhc-CC---------cchHHHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHh
Q 036356 220 ---WSAFGSFDGLLS-NE---------ENEYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT 286 (462)
Q Consensus 220 ---~~a~~~~~~m~~-~~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (462)
+.-..+.+.... -+ ......|...+-..|++.+|..++..+...-...+... --+.
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~-----------~kve 178 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS-----------EKIQ 178 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH-----------HHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH-----------HHHH
Confidence 112222222222 11 11234566778888999999999998865322211100 0134
Q ss_pred HHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc--hhHHHHHHHHHHhcCCcchHHHHhccCCC-----CCccch
Q 036356 287 LWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KDVVMR 359 (462)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 359 (462)
.+...++.|...+++.+|..++.+.... .......|+ ...|...+..+...+++.+|.+.|.+..+ .|...+
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~-~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~ 257 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKK-TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKW 257 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHH
Confidence 5777788999999999999998874321 112222233 35677778888889999999888776642 122222
Q ss_pred HH----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--CChHHHHHHHHhC
Q 036356 360 SA----MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARA--GYSNHAFKFIMNM 417 (462)
Q Consensus 360 ~~----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m 417 (462)
.. ++.+..-.+....-..++.........++...|..++.+|... .+++.+.+.++..
T Consensus 258 ~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 258 KPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 21 1112222222222233344433333346678899999999875 4677777777654
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.26 E-value=5.3 Score=39.87 Aligned_cols=129 Identities=8% Similarity=-0.054 Sum_probs=79.0
Q ss_pred HHHHHHhhcCccc-hhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhH--HHHHHHHHHcCCC-hhHHHHHhhHHH
Q 036356 237 YGTALDCSCDLEF-LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL--WNAMISGYAKNGY-AEEAVKLFPKWM 312 (462)
Q Consensus 237 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~li~~~~~~~~-~~~a~~~~~~~~ 312 (462)
...++..+...++ ++.|..+++.+.+.. |.... ...+|..+.+.++ --+|.+++.+.+
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~------------------p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l 312 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD------------------PIHDIYYKTAMITILDHIETKELDMITILNETL 312 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC------------------GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC------------------CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4455566655655 588999999988864 43322 2233333333332 234666666544
Q ss_pred HHHHHh-hCCCCc-h----------hHHHHHHHHHHhcCCcchHHHHhccCC--CC-CccchHHHHHHHHhcCChHHHHH
Q 036356 313 DYYIGK-SEYRNN-V----------IVNTVLIDMYAKCGSVDLAPMFFDRTL--DK-DVVMRSAMTVGYGLHGLGEEGWV 377 (462)
Q Consensus 313 ~~~~~~-~~~~p~-~----------~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~ 377 (462)
...... ....+. . ...+.=.+.+...|+++-|..+-++.. .| +-.+|..|..+|...|+++.|+-
T Consensus 313 ~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 313 DPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 322111 111111 1 011111334567899999999998876 34 57799999999999999999999
Q ss_pred HHHHHH
Q 036356 378 LFHHIR 383 (462)
Q Consensus 378 ~~~~m~ 383 (462)
.++.+-
T Consensus 393 tLNScP 398 (754)
T 4gns_B 393 AINSMP 398 (754)
T ss_dssp HHHHSC
T ss_pred HHhcCC
Confidence 998873
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.25 E-value=36 Score=36.15 Aligned_cols=145 Identities=9% Similarity=-0.058 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC---C----------
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD---K---------- 354 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~---------- 354 (462)
...++..+.+.+..+-+.++... ..-+....-.+..+|...|++++|...|++... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~----------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~ 884 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGW----------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE 884 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHH----------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh----------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc
Confidence 34466667777777776665432 122333333456778899999999999987641 0
Q ss_pred -----------C--ccchHHHHHHHHhcCChHHHHHHHHHHHHCCC-C-CC--HhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036356 355 -----------D--VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI-E-PR--HQHYARVVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 355 -----------~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 417 (462)
+ ..=|..++..+.+.+.++.+.++-....+..- . ++ ...|..++++....|++++|...+-.+
T Consensus 885 ~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 885 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 0 01256788888889999999888777666421 1 11 225788899999999999999988777
Q ss_pred C-CCCCHHHHHHHHHHHHccCChHHH
Q 036356 418 P-IELRLSVRRALLSAWKIPMQQWEN 442 (462)
Q Consensus 418 ~-~~p~~~~~~~l~~~~~~~~~~~~a 442 (462)
+ ..-.......|+..+|..|....-
T Consensus 965 pd~~~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 965 STTPLKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHSSSCHHHHHHHHHHHHHHCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhhh
Confidence 2 223455677888888888776544
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.11 E-value=44 Score=35.53 Aligned_cols=122 Identities=8% Similarity=-0.027 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCC-Cc--hhHHHHHHHHHHhcCCcchHHHHhccCCCC--CccchHHH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYR-NN--VIVNTVLIDMYAKCGSVDLAPMFFDRTLDK--DVVMRSAM 362 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 362 (462)
|..++..+-+.|.++.+.++-...+. ..+.. ++ ...|..+++.+...|++++|...+-.+..+ -..+...|
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~----~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~L 977 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADA----SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHH----HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44555555555555555555444321 11111 11 124555566666666666665555444321 12233445
Q ss_pred HHHHHhcCCh------------HHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCChHHHHHH
Q 036356 363 TVGYGLHGLG------------EEGWVLFHHIRKHG--IEPRHQHYARVVDLLARAGYSNHAFKF 413 (462)
Q Consensus 363 i~~~~~~~~~------------~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~ 413 (462)
+..+|..|.. ++..+++..-.+.. ......-|..|-.-....|++..|-.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 5544544443 34444443322211 111122344444445566666665443
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.63 E-value=1.4 Score=32.60 Aligned_cols=83 Identities=10% Similarity=-0.061 Sum_probs=60.7
Q ss_pred cchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhH---HHHHHHHhhhhhhhhcCCCC-
Q 036356 97 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEE---AVKLFPKWMDYYIGKSEYRN- 172 (462)
Q Consensus 97 ~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~- 172 (462)
..+..+++-|......|. |+..+-..+..++++..+... ++.++++. ...+ .|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-----------------~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l-----~~~~-~p~ 71 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-----------------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL-----LPKG-SKE 71 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-----------------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH-----TTTS-CHH
T ss_pred HHHHHHHHHHHHHhccCC-----------------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-----HhcC-Ccc
Confidence 345566677776666665 788887778889999887666 89999996 3333 22
Q ss_pred -CchHHHHHHHHHHhcCCcccHHHHhhccCC
Q 036356 173 -NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD 202 (462)
Q Consensus 173 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 202 (462)
.......|.-++.+.|++++|.+.++.+.+
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 233444577889999999999999998763
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.39 E-value=4.7 Score=28.33 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=29.0
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHH
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLID 182 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~ 182 (462)
.|++.+..+.+.+|.+-+++..|+++|+-. +....+...+|..++.
T Consensus 42 VP~P~ii~aaLrAcRRvND~alAVR~lE~i------K~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 42 VPEPKIIDAALRACRRLNDFASAVRILEVV------KDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHTTTCTTHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHhcCchhhHHHHHH
Confidence 677777777777777777777777777774 3333333445555554
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.72 E-value=30 Score=30.61 Aligned_cols=164 Identities=16% Similarity=0.052 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHHHHHHHhCc------hHHH---HHHHhhhc-CCcchHHHHHHhhc
Q 036356 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMIVGYGLHE------WSAF---GSFDGLLS-NEENEYGTALDCSC 245 (462)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~------~~a~---~~~~~m~~-~~~~~~~~ll~~~~ 245 (462)
+|.++..-|.+.+++++|++++..-. ..+.+.+ +-+. ++|++-.. +|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA-----------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS-----------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH-----------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44456666788888888888764311 0111111 2222 22222222 56666666666665
Q ss_pred Cccchhh-hHHHHHHH----HHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356 246 DLEFLEQ-GKIVHGFM----IKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320 (462)
Q Consensus 246 ~~~~~~~-a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (462)
....-+. -..+.+.+ .+.|-. ..-|......+...|.+.+++.+|+..|-. |
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~--------------~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il---------g 162 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDY--------------PAGDPELHHVVGTLYVEEGEFEAAEKHLVL---------G 162 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSC--------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHTT---------S
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCC--------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHh---------c
Confidence 4443211 11222222 222211 134566667778889999999999888743 4
Q ss_pred CCCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
-.++...|..++.-+.+.+...++-- | ....+--|.-.++...|..+++...+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~~~~e~dl-f----------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQDESHTAPL-Y----------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTSCGGGHHH-H----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCccHHH-H----------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555677666655555444222211 1 12234445567788888877666554
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.62 E-value=30 Score=30.58 Aligned_cols=130 Identities=8% Similarity=-0.023 Sum_probs=73.2
Q ss_pred HHHHhhhcCCCCCeeeHHHHHHHHHhCCChh-HHHHHHHHhhhhhhhhcC--CCCCchHHHHHHHHHHhcCCcccHHHHh
Q 036356 121 LISLTAVCRYQPNVTLRNAMISGYAKNGYAE-EAVKLFPKWMDYYIGKSE--YRNNVIVNTVLIDMYAKCGSVDLAPMFF 197 (462)
Q Consensus 121 l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 197 (462)
+++.|.+.+.++|.....-|+..+.....-+ .-.++.+++..+... .| ..-|......+...|.+.+++.+|+.-|
T Consensus 81 lvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 81 LVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455555555888888778887777665422 234455554333333 23 3446778888999999999999999888
Q ss_pred hccCCCCcchHHHHHHHHHhCc--hHHHHHHHhhhcCCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356 198 DRTLDKDVVMRSAMIVGYGLHE--WSAFGSFDGLLSNEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262 (462)
Q Consensus 198 ~~m~~~~~~~~~~li~~~~~~~--~~a~~~~~~m~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 262 (462)
-.-.++....+..++.-+...+ .++-- +.-. .+--|.-.+++..|..+++...+
T Consensus 160 ilg~~~s~~~~a~mL~ew~~~~~~~e~dl----------fiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 160 VLGTKESPEVLARMEYEWYKQDESHTAPL----------YCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TTSCTTHHHHHHHHHHHHHHTSCGGGHHH----------HHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhcCCccHHH----------HHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 4322223356655554443332 11111 1111 22233445677777776665544
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.50 E-value=5.3 Score=28.08 Aligned_cols=60 Identities=7% Similarity=-0.036 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 036356 372 GEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLS 431 (462)
Q Consensus 372 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~ 431 (462)
.=++.+-++.+....+-|+.....+.+.+|-+.+++..|.++++-. +..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3345555666666667777777777777777777777777777666 22233334555544
No 248
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.23 E-value=21 Score=28.53 Aligned_cols=121 Identities=13% Similarity=0.050 Sum_probs=68.2
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCCCcchHHHH
Q 036356 132 PNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAM 211 (462)
Q Consensus 132 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l 211 (462)
++...-...+.++.+.|+.+..-.+.+.+ -.++..+-...+.++.+.++.+....+.+.+.+++...-...
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l---------~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a 127 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKAL---------KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAA 127 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHT---------TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 44444455556666666543333333322 135666666777777777776655555565656666655566
Q ss_pred HHHHHhCc-hHHHHHHHhhhc-CCcchHHHHHHhhcCccchhhhHHHHHHHHH
Q 036356 212 IVGYGLHE-WSAFGSFDGLLS-NEENEYGTALDCSCDLEFLEQGKIVHGFMIK 262 (462)
Q Consensus 212 i~~~~~~~-~~a~~~~~~m~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 262 (462)
+.++.+.+ ..+...+..+.. ++..+-...+.++.+.|. +.+...+..+.+
T Consensus 128 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 128 AFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 66666666 555555555555 665555566666665554 334444444443
No 249
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.23 E-value=22 Score=28.72 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=27.6
Q ss_pred CchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383 (462)
Q Consensus 323 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 383 (462)
++..+-...+.++++.|+.+....+.+.+..++...-...+.++.+.+. ..+...+..+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 4444444455555555554433333333334444444444555555544 33444444443
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.83 E-value=4.7 Score=37.47 Aligned_cols=58 Identities=12% Similarity=-0.036 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHhccCCC----C--CccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 327 VNTVLIDMYAKCGSVDLAPMFFDRTLD----K--DVVMRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 327 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
+...+.+.|.+.|+++.|.+.|.++.+ + -...+-.+++.+...+++..+...+.+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455666666666666666665542 1 112344555566666666666666655543
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.30 E-value=13 Score=27.45 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=45.3
Q ss_pred CCccchHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC-C-HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036356 354 KDVVMRSAMTVGYGLHGLGEE---GWVLFHHIRKHGIEP-R-HQHYARVVDLLARAGYSNHAFKFIMNM-PIELR 422 (462)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 422 (462)
++..+--.+..++.+..+... ++.+++++.+.+ .| + ....-.|.-++.+.|++++|.+.++.+ .++|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 444555566677777766554 778888877743 24 2 334445666788888888888888887 55564
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.51 E-value=43 Score=31.12 Aligned_cols=187 Identities=9% Similarity=-0.065 Sum_probs=111.4
Q ss_pred cchhhhHHHHHHHHHhCCC-cchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchh
Q 036356 248 EFLEQGKIVHGFMIKLGLE-LESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 326 (462)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~ 326 (462)
++++.|.+.+-.+.+.... .| ..........++..|.+.|+++...+.+.-. ..++|..+...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d------------~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L----skkr~qlk~ai 93 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASD------------LASSKEVLAKIVDLLASRNKWDDLNEQLTLL----SKKHGQLKLSI 93 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCS------------TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH----HTTTTTSHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccc------------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHH----HHHhhhhHHHH
Confidence 6677777766655543211 00 1234455667788888888888876666542 23444433332
Q ss_pred HH--HHHHHHHHhcCCcc--hHHHHhccCCC-CCccc---------hHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC
Q 036356 327 VN--TVLIDMYAKCGSVD--LAPMFFDRTLD-KDVVM---------RSAMTVGYGLHGLGEEGWVLFHHIRKH--GIEPR 390 (462)
Q Consensus 327 ~~--~~li~~~~~~g~~~--~A~~~~~~~~~-~~~~~---------~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~ 390 (462)
+. ..++.........+ .-..+.+.... .+..+ ...|...|...|++.+|.+++..+... |....
T Consensus 94 ~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 94 QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 21 22222222333322 22334443331 12222 246788899999999999999998765 33222
Q ss_pred ---HhHHHHHHHHHHhcCChHHHHHHHHhC-----CCC--CC--HHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 391 ---HQHYARVVDLLARAGYSNHAFKFIMNM-----PIE--LR--LSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 391 ---~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~--p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
...|..-+..|...+++.+|..++++. ... |+ ...+...+.-+...+++.+|...+.+..
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456777888899999999999988876 122 22 2245566667777788888877766653
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.44 E-value=31 Score=29.02 Aligned_cols=122 Identities=18% Similarity=0.098 Sum_probs=71.4
Q ss_pred HHHHHhcCCcchHHHHhccCC-C---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhcC
Q 036356 332 IDMYAKCGSVDLAPMFFDRTL-D---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH--YARVVDLLARAG 405 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g 405 (462)
+...+..|+.+-+..+++... . .|..-.+.|..+. ..++.....++++.+.+.|..++... -.+.+...++.|
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 444556788887777776522 2 3444455555554 45565566778888888888776432 224455566788
Q ss_pred ChHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCCC
Q 036356 406 YSNHAFKFIMNMPIEL---RLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDKR 459 (462)
Q Consensus 406 ~~~~A~~~~~~m~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~~ 459 (462)
..+-+..+++..+..+ |....+.|--+ ++.|+. +.+ .-.++.|..|+..
T Consensus 231 ~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A-~~~~~~-~i~---~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 231 HLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK-KIA---ELLCKRGASTDCG 282 (285)
T ss_dssp CHHHHHHHHHSSSCCTTCCCTTSCCHHHHH-HHTTCH-HHH---HHHHHHSSCSCCS
T ss_pred CHHHHHHHHhccCCCccccCCCCCcHHHHH-HHcCcH-HHH---HHHHHcCCCCCcc
Confidence 9888888888553333 23333344433 444554 333 2345667777654
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.78 E-value=28 Score=35.70 Aligned_cols=22 Identities=9% Similarity=-0.156 Sum_probs=13.9
Q ss_pred HHHHHhcCCcccHHHHhhccCC
Q 036356 181 IDMYAKCGSVDLAPMFFDRTLD 202 (462)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~m~~ 202 (462)
--+....|+.+++..+++....
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~ 402 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLP 402 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTST
T ss_pred HhhhhccCchHHHHHHHHHhcc
Confidence 3345566777777777776553
No 255
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=75.08 E-value=26 Score=26.87 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=68.9
Q ss_pred CCHhHHHHHHHHHHcCCCh------hHHHHHhhHHHHHHHHhhCCCCch----hHHHHHHH---HHHhcCCcchHHHHhc
Q 036356 283 PNVTLWNAMISGYAKNGYA------EEAVKLFPKWMDYYIGKSEYRNNV----IVNTVLID---MYAKCGSVDLAPMFFD 349 (462)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~p~~----~~~~~li~---~~~~~g~~~~A~~~~~ 349 (462)
-|..+|-..+...-+.|++ ++..++|++.+. .++|+. ..|--|-- .+...+++++|.++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia------~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE------ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ 84 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH------HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH------cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4677777777777777888 777777777432 233321 11111111 1234589999999999
Q ss_pred cCCCC--C-ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 036356 350 RTLDK--D-VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVD 399 (462)
Q Consensus 350 ~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 399 (462)
.+..- . ...|-....--.+.|+..+|.+++......+-.| ...+.+.+.
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 88532 1 2234444455567899999999999999865444 344444443
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.76 E-value=8.7 Score=28.65 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHH
Q 036356 101 QGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVL 180 (462)
Q Consensus 101 ~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~l 180 (462)
+..+-++.+...++ .|++.+..+.+.+|-+-+|+..|+++|+-. +....+...+|.-+
T Consensus 71 ElrrglN~l~~~Dl----------------VPeP~Ii~AALrAcRRvNDfalAVR~lE~v------K~K~~~~~~iY~y~ 128 (152)
T 2y69_E 71 ELRKGMNTLVGYDL----------------VPEPKIIDAALRACRRLNDFASAVRILEVV------KDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHHTTSSB----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHTTTCTTHHHHH
T ss_pred HHHHHHHHHhcccc----------------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHH------HHhcCCchhhHHHH
Confidence 34555556666666 788888888889998899999999988885 44444445567666
Q ss_pred HH
Q 036356 181 ID 182 (462)
Q Consensus 181 i~ 182 (462)
++
T Consensus 129 lq 130 (152)
T 2y69_E 129 IQ 130 (152)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.75 E-value=20 Score=27.87 Aligned_cols=120 Identities=8% Similarity=-0.037 Sum_probs=52.1
Q ss_pred hCCCCchhHHHHH--HHHHHhcCCcchHHHHhccCC-----CCCcc-------chHHHHHHHHhcCChHHHHHHHHHHHH
Q 036356 319 SEYRNNVIVNTVL--IDMYAKCGSVDLAPMFFDRTL-----DKDVV-------MRSAMTVGYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 319 ~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~-----~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~ 384 (462)
.|..|....|+.+ ++.+...|.++.|+-+.+.+. .++.. ++..+..++...|++.+|...|+....
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4455544333322 445556666666666655443 12321 334555666666666666666666433
Q ss_pred C-CCCCCHh-HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 036356 385 H-GIEPRHQ-HYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIR 448 (462)
Q Consensus 385 ~-g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 448 (462)
. ..-|... ++..+- ....... .....++...---+..+|...++..+|+..++.
T Consensus 92 ~~k~l~k~~s~~~~~~---~~ss~p~-------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG---NSASTPQ-------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHCC------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhcCCCcccccc---ccCCCcc-------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 2 1111111 111110 0000000 001122334445588888999999999976653
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.40 E-value=11 Score=29.29 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCCCHhHHHHH--HHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc-------hhHHHHHHHHHHhcCCcchHHHHhccC
Q 036356 281 YQPNVTLWNAM--ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN-------VIVNTVLIDMYAKCGSVDLAPMFFDRT 351 (462)
Q Consensus 281 ~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~ 351 (462)
..|....|+-+ +..+...|.++.|+-+....+- +.+. .|+ ..++..+.+++...|++..|...|+..
T Consensus 14 ~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlS--l~~~--~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 14 LVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLT--LSNN--NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -------CCHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHH--STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhcC--CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44555555555 4578888999999888887543 2222 232 235566778899999999999999874
Q ss_pred CC------CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036356 352 LD------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMP 418 (462)
Q Consensus 352 ~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 418 (462)
.+ .+..++..+- ....... .....++...---+-..|.+.|++++|+.+++.++
T Consensus 90 Lq~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 31 1111111110 0000000 01123344444457778889999999999999884
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.90 E-value=9.7 Score=28.38 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036356 373 EEGWVLFHHIRKHGIEPR--HQHYARVVDLLARAGYSNHAFKFIMNM-PIELRL 423 (462)
Q Consensus 373 ~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 423 (462)
.+++.+++++.+.+ |. ...+-.|.-++.+.|++++|.+..+.+ .+.|+.
T Consensus 60 ~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 60 RLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 45666666666533 42 334445555666677777777766666 555543
No 260
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=72.88 E-value=34 Score=27.23 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=26.1
Q ss_pred CchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 036356 323 NNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIR 383 (462)
Q Consensus 323 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 383 (462)
++..+-...+.++++.++.+....+.+.+..++...-...+.++.+.|. .++...+..+.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3444444445555555543333333333334444444444555555444 33344444443
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.38 E-value=52 Score=28.75 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=23.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 036356 390 RHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIP 436 (462)
Q Consensus 390 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~ 436 (462)
+......+...|.+.|++.+|..-| -.+-.-+...+..++.-+...
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~-i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF-MLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH-HTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH-HhCCCccHHHHHHHHHHHHHh
Confidence 3555666666677777666654322 113212344555555444444
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.17 E-value=9.6 Score=32.40 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=64.1
Q ss_pred HHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHhcCC
Q 036356 334 MYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQ----HYARVVDLLARAGY 406 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~ 406 (462)
...+.|++++|+.....-.+ .|...-..|+..+|-.|++++|.+-++...+ +.|+.. .|..+|.+=.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~aE~---- 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQ---- 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHHHH----
Confidence 45567888888777665442 3666777888999999999999998888888 666633 4444443311
Q ss_pred hHHHHHHHHhC---C-CCCCHHHHHHHHHHHHc--cCChHHHHHHHHhhh
Q 036356 407 SNHAFKFIMNM---P-IELRLSVRRALLSAWKI--PMQQWENMLQTIRGI 450 (462)
Q Consensus 407 ~~~A~~~~~~m---~-~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 450 (462)
..+ ++|.-- + +.....-...++.+... .|+.++|...-.+..
T Consensus 80 ~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~ 127 (273)
T 1zbp_A 80 ARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 127 (273)
T ss_dssp HHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 111 122211 1 11122233445555443 488888876655553
No 263
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.93 E-value=87 Score=30.74 Aligned_cols=90 Identities=6% Similarity=-0.042 Sum_probs=52.6
Q ss_pred HHHhcCCcchHHHHhccCCCCCcc--chHHHHH-HHHhcC--------------C-hHHHHHHHHHHHHC-----CCCC-
Q 036356 334 MYAKCGSVDLAPMFFDRTLDKDVV--MRSAMTV-GYGLHG--------------L-GEEGWVLFHHIRKH-----GIEP- 389 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~-~~~~~~--------------~-~~~a~~~~~~m~~~-----g~~p- 389 (462)
-+...|++++|..+|.-..+.|.+ ..|.++. +.+... + ...|.++.+..... .+.+
T Consensus 452 ~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 531 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVK 531 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHH
T ss_pred HHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHH
Confidence 456788888888888877764432 3333332 222211 1 23445555443332 2333
Q ss_pred CHhHHHHHHHH-----HHhcCChHHHHHHHHhCCCCCCH
Q 036356 390 RHQHYARVVDL-----LARAGYSNHAFKFIMNMPIELRL 423 (462)
Q Consensus 390 ~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~~ 423 (462)
+..|+..|++. +...|+++.|++.++++++-|..
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 34566665543 37889999999999999655543
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.82 E-value=36 Score=27.45 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=41.6
Q ss_pred cchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC
Q 036356 248 EFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN 323 (462)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p 323 (462)
+...++..+|..|..+|+. .--+..|......+-..|++.+|.++|.. -...+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG---------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~-----GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIG---------------TKLSLFYEEFSKLLENAQFFLEAKVLLEL-----GAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSS---------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHH-----HHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCcc
Confidence 3456888888888888885 45566677777788888888888888877 44455556
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.78 E-value=17 Score=27.07 Aligned_cols=59 Identities=7% Similarity=-0.015 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036356 374 EGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLSVRRALLSA 432 (462)
Q Consensus 374 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~ 432 (462)
+..+-++.+....+-|+.......+.+|-+.+++.-|.++++-. +..+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 44555566666667777777777777777777777777777766 333344455555543
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.36 E-value=29 Score=24.27 Aligned_cols=53 Identities=15% Similarity=-0.077 Sum_probs=40.4
Q ss_pred HHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036356 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGI 387 (462)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 387 (462)
..+...|++++|..+.+...-||..+|-+|-. .+.|..+++...+.++...|-
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~ 99 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSSD 99 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCC
Confidence 45678899999999988888888888866543 467787888877777776553
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.71 E-value=16 Score=27.62 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=10.5
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036356 397 VVDLLARAGYSNHAFKFIMNM 417 (462)
Q Consensus 397 li~~~~~~g~~~~A~~~~~~m 417 (462)
|.-++.+.|++++|.+..+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 333455555555555555544
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.45 E-value=31 Score=24.20 Aligned_cols=52 Identities=13% Similarity=-0.016 Sum_probs=37.1
Q ss_pred HHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036356 333 DMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHG 386 (462)
Q Consensus 333 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 386 (462)
..+...|++++|..+.+...-||..+|-+|-. .+.|..+++...+.++...|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 35667888888888888888788887766543 35677777777776666654
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.23 E-value=15 Score=32.85 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCcchHHHHhccCCCCCc---cchHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 036356 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMTVGYGLHGL--GEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 389 (462)
.+.++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 45667777777888888888887765531 223344444444332 345666666666655433
No 270
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=63.85 E-value=35 Score=25.40 Aligned_cols=84 Identities=7% Similarity=-0.095 Sum_probs=56.3
Q ss_pred HHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCC---cchHHHHhccCCC--C--CccchHHHHHHHHhcCChHHH
Q 036356 303 EAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS---VDLAPMFFDRTLD--K--DVVMRSAMTVGYGLHGLGEEG 375 (462)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a 375 (462)
+-++.|++..++.. +-.|+..+--.+..++.+..+ ..+++.+++.+.+ | ....+-.|.-++.+.|++++|
T Consensus 21 eeL~~l~~qy~~E~---~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~A 97 (134)
T 3o48_A 21 QQLEILRQQVVSEG---GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMA 97 (134)
T ss_dssp HHHHHHHHHHHHTT---GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHH
Confidence 33445555443222 445666665556667777665 4467777776653 2 234556788899999999999
Q ss_pred HHHHHHHHHCCCCCCH
Q 036356 376 WVLFHHIRKHGIEPRH 391 (462)
Q Consensus 376 ~~~~~~m~~~g~~p~~ 391 (462)
.+..+.+.+ +.|+.
T Consensus 98 r~y~d~lL~--~eP~N 111 (134)
T 3o48_A 98 KRYVDTLFE--HERNN 111 (134)
T ss_dssp HHHHHHHHT--TCTTC
T ss_pred HHHHHHHHh--hCCCC
Confidence 999999999 88873
No 271
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.02 E-value=69 Score=27.05 Aligned_cols=124 Identities=6% Similarity=-0.079 Sum_probs=65.8
Q ss_pred CCchhHHHHHHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036356 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHG-LGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400 (462)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 400 (462)
.++..+-...+.++++.|+.+....+.+.+..++...-...+.++...+ +...+...+..+.. .++...-...+.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~a 215 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIG 215 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3555555666677777776554444444445566555555556665554 23455555555543 3556666667777
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhc
Q 036356 401 LARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDE 452 (462)
Q Consensus 401 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 452 (462)
+.+.|..+-...+.+.+. .|+ .-...+.++...|. .+++..+.+.+..
T Consensus 216 L~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 216 LSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp HHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT
T ss_pred HHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc
Confidence 777776554444444443 133 22334555555555 3555555555543
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=62.82 E-value=73 Score=29.09 Aligned_cols=326 Identities=14% Similarity=0.094 Sum_probs=145.1
Q ss_pred HHhhccCCCCccchhhhHhHhhhCchhhhhhhcCCCCCceeehhh--hccCCChhhHHHHHHhhcC---CCcchHHHHHH
Q 036356 17 LKACVALPSLLMGPRVHGQIFSLGFLVCYLFDGLFDRTIVFLDLY--HLWSRTEWSAFGSFDGLLS---NEENEYGTALD 91 (462)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~m~~---~~~~~~~~ll~ 91 (462)
|...+..|+++ +++.+++.|..+ ...+....+.+ .+..|+.+-+.-+++.-.. .+..-. +.+.
T Consensus 18 L~~Aa~~g~~~----~v~~Ll~~g~~~-------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~ 85 (437)
T 1n11_A 18 LHVASFMGHLP----IVKNLLQRGASP-------NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLH 85 (437)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCS-------CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHH
T ss_pred HHHHHHCCCHH----HHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHH
Confidence 33444556544 445555555431 01223334445 6666776655555554311 122222 2333
Q ss_pred hhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCee---eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhc
Q 036356 92 CSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVT---LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS 168 (462)
Q Consensus 92 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 168 (462)
..++.|+.+ +++.+.+.|. .|+.. -++ .+...++.|+.+-+..+++.- ..
T Consensus 86 ~A~~~g~~~----~v~~Ll~~ga----------------~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~------~~ 138 (437)
T 1n11_A 86 CAARIGHTN----MVKLLLENNA----------------NPNLATTAGHT-PLHIAAREGHVETVLALLEKE------AS 138 (437)
T ss_dssp HHHHHTCHH----HHHHHHHHTC----------------CTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTT------CC
T ss_pred HHHHCCCHH----HHHHHHhCCC----------------CCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCC------CC
Confidence 344455544 4555556665 44432 233 344456677877666666542 11
Q ss_pred CCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHHHHHHHHhCchHHHHHHHhhhc----CCcchHHHHH
Q 036356 169 EYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMIVGYGLHEWSAFGSFDGLLS----NEENEYGTAL 241 (462)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~a~~~~~~m~~----~~~~~~~~ll 241 (462)
....+..-+ +.+...++.|+.+-+..+++.-..+ +....+.+..+......+..+++-+-.. ++...++.+.
T Consensus 139 ~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 217 (437)
T 1n11_A 139 QACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217 (437)
T ss_dssp SCCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHH
T ss_pred CcCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence 111122222 2445556778888777777654433 2223344444443333444444433222 2222222222
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (462)
..+..|+. ++.+.+.+.|..++ ..+..-.+.+. ..+..|+.+-+.-++. .|.
T Consensus 218 -~A~~~~~~----~~~~~Ll~~g~~~~-------------~~~~~g~t~L~-~A~~~g~~~~v~~Ll~---------~~~ 269 (437)
T 1n11_A 218 -IAAKQNQV----EVARSLLQYGGSAN-------------AESVQGVTPLH-LAAQEGHAEMVALLLS---------KQA 269 (437)
T ss_dssp -HHHHTTCH----HHHHHHHHTTCCTT-------------CCCTTCCCHHH-HHHHTTCHHHHHHHHT---------TTC
T ss_pred -HHHHcCCH----HHHHHHHHcCCCCC-------------CCCCCCCCHHH-HHHHCCCHHHHHHHHh---------cCC
Confidence 33344443 34445555554432 12222222232 2344566554444333 233
Q ss_pred CCch---hHHHHHHHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH-
Q 036356 322 RNNV---IVNTVLIDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY- 394 (462)
Q Consensus 322 ~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~- 394 (462)
.++. ...+ .+...++.|..+-+..+++.-.. .|..-++.|..+ +..|+.+ +++.+.+.|..++....
T Consensus 270 ~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~gad~n~~~~~ 343 (437)
T 1n11_A 270 NGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA-SHYGNIK----LVKFLLQHQADVNAKTKL 343 (437)
T ss_dssp CTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH-HHSSCSH----HHHHHHHTTCCTTCCCTT
T ss_pred CCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHH-HHcCcHH----HHHHHHhcCCCCCCCCCC
Confidence 2221 1111 23334456666666666654332 233344454444 3456654 34444555666553221
Q ss_pred -HHHHHHHHhcCChHHHHHHHHh
Q 036356 395 -ARVVDLLARAGYSNHAFKFIMN 416 (462)
Q Consensus 395 -~~li~~~~~~g~~~~A~~~~~~ 416 (462)
.+-+...++.|..+-+.-+++.
T Consensus 344 g~t~L~~A~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 344 GYSPLHQAAQQGHTDIVTLLLKN 366 (437)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCHHHHHHHCChHHHHHHHHHC
Confidence 1223333456766655555543
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.38 E-value=31 Score=27.80 Aligned_cols=74 Identities=9% Similarity=0.018 Sum_probs=51.2
Q ss_pred cCCCcc---hHHHHHHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHH
Q 036356 79 LSNEEN---EYGTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVK 155 (462)
Q Consensus 79 ~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 155 (462)
.+.|.. .|-..++.+ ..++...+..+|..|...|+ ..--...|-.....+-..|++++|.+
T Consensus 73 YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~I---------------G~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGI---------------GTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTS---------------STTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444544 344444443 13446688999999999888 23445667888888888999999999
Q ss_pred HHHHhhhhhhhhcCCCCC
Q 036356 156 LFPKWMDYYIGKSEYRNN 173 (462)
Q Consensus 156 ~~~~m~~~~~~~~~~~~~ 173 (462)
+|+.= ...+-+|-
T Consensus 137 Vy~~G-----I~~~A~P~ 149 (202)
T 3esl_A 137 LLELG-----AENNCRPY 149 (202)
T ss_dssp HHHHH-----HHTTCBSH
T ss_pred HHHHH-----HHcCCccH
Confidence 99884 66666664
No 274
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=61.85 E-value=12 Score=33.44 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhc-CCcccHHHHhhccCCCCcchHHHHHHHH
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKC-GSVDLAPMFFDRTLDKDVVMRSAMIVGY 215 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~li~~~ 215 (462)
...++.-|...|+.++|.+.++++ ......+ ..+...+..++-+. ..-+.+..++..+.+.+..+-..+..||
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el-----~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf 87 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL-----ASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGL 87 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT-----CCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc-----CCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 346788888889999999999997 2222111 12223233222221 1223445555555556666666666665
Q ss_pred HhCchHHHHHHHhhhc--CCcchHHHHHHh
Q 036356 216 GLHEWSAFGSFDGLLS--NEENEYGTALDC 243 (462)
Q Consensus 216 ~~~~~~a~~~~~~m~~--~~~~~~~~ll~~ 243 (462)
.+ .++.++.+.- |....+-.-+-+
T Consensus 88 ~~----~~~~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 88 YE----ILELAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HH----HHHHHHHHTTTCTTHHHHHHHHHG
T ss_pred HH----HHhhChHhhcCccchHHHHHHHHH
Confidence 33 2222233222 666655554433
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.24 E-value=65 Score=29.29 Aligned_cols=88 Identities=15% Similarity=0.015 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCcchHHHHhccCCC----CCcc-----chHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHhHH----
Q 036356 330 VLIDMYAKCGSVDLAPMFFDRTLD----KDVV-----MRSAMTVGYGLHGLGEEGWVLFHHIRKH--GIEPRHQHY---- 394 (462)
Q Consensus 330 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~---- 394 (462)
-++..|...|++.+|.+++..+.+ .|.. .|-.-+..|...+++.++...+...... .+.|++..-
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466667777777777666665542 2222 2334455666677777777777665543 221222211
Q ss_pred HHHHHHHH-hcCChHHHHHHHHhC
Q 036356 395 ARVVDLLA-RAGYSNHAFKFIMNM 417 (462)
Q Consensus 395 ~~li~~~~-~~g~~~~A~~~~~~m 417 (462)
..-...+. ..++|.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 11222334 567777777766653
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.20 E-value=80 Score=26.84 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=26.9
Q ss_pred HHHHHhcCCcchHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH
Q 036356 332 IDMYAKCGSVDLAPMFFDRTLD---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH 393 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 393 (462)
+...+..|..+-+..+++.-.. .|..-++..+...+..|+. ++.+.+.+.|..|+...
T Consensus 165 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 3444455666655555543222 2222333322333344443 34555566666666443
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.91 E-value=1.1e+02 Score=27.65 Aligned_cols=231 Identities=8% Similarity=-0.040 Sum_probs=121.2
Q ss_pred HHHHHHHHHhcCCcccHHHHhhccCC--------CCcchHHHHHHHHHhCc---hHHHHHHHhhhc---CCcchH-----
Q 036356 177 NTVLIDMYAKCGSVDLAPMFFDRTLD--------KDVVMRSAMIVGYGLHE---WSAFGSFDGLLS---NEENEY----- 237 (462)
Q Consensus 177 ~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~---~~a~~~~~~m~~---~~~~~~----- 237 (462)
...|...|.+.|+.++...++..... +....-..++..+.... +.-.++..+..+ ....+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666655442 12233445555555443 333333333333 222333
Q ss_pred -HHHHHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHH
Q 036356 238 -GTALDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYI 316 (462)
Q Consensus 238 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 316 (462)
..+...|...|++.+|.+++..+.+.=-..|..+ --...+..-+..|...++..++...+..... .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~-----------~llev~lle~~~~~~~~n~~k~k~~l~~a~~--~ 168 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKN-----------LLVEVQLLESKTYHALSNLPKARAALTSART--T 168 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch-----------hHHHHHHHHHHHHHHhccHHHHHHHHHHHHh--h
Confidence 2577888899999999999988877422211110 1133466667888899999999998877432 2
Q ss_pred HhhCCCCchhHHHHH----HHHHH-hcCCcchHHHHhccCC----CC------CccchHHHHHHHHhcCChHHHHHHHH-
Q 036356 317 GKSEYRNNVIVNTVL----IDMYA-KCGSVDLAPMFFDRTL----DK------DVVMRSAMTVGYGLHGLGEEGWVLFH- 380 (462)
Q Consensus 317 ~~~~~~p~~~~~~~l----i~~~~-~~g~~~~A~~~~~~~~----~~------~~~~~~~li~~~~~~~~~~~a~~~~~- 380 (462)
.. .+.+++.+-..+ ...+. ..+++..|...|-+.. +. +...|..|.. .. .++..+...++.
T Consensus 169 ~~-ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~ 245 (394)
T 3txn_A 169 AN-AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSG 245 (394)
T ss_dssp HH-HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHS
T ss_pred hc-cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhcc
Confidence 22 222333222221 22345 7888988887775442 11 1222322222 22 222222222221
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHH
Q 036356 381 HIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNM--PIELRLS 424 (462)
Q Consensus 381 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~ 424 (462)
+....-..|....+..++.+|. .+++.+..++++.. .+..|..
T Consensus 246 ~~~~~~~~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~ 290 (394)
T 3txn_A 246 KLAITYSGRDIDAMKSVAEASH-KRSLADFQAALKEYKKELAEDVI 290 (394)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHH
T ss_pred ccccccCCccHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChH
Confidence 2111113466666666777654 46777777777765 2344443
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.54 E-value=54 Score=25.06 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC
Q 036356 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 173 (462)
Q Consensus 100 ~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 173 (462)
+.+..+|..|.+.|+ ..--...|-.....+-..|++++|.++|+.= .+.+-+|-
T Consensus 82 ~dp~~if~~L~~~~I---------------G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G-----i~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGI---------------GTLSSPLYIAWAGHLEAQGELQHASAVLQRG-----IQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTT---------------TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHTTCBSH
T ss_pred CCHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHcCCccH
Confidence 347788888888877 2344456777777788888888888888774 55555553
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.94 E-value=73 Score=25.87 Aligned_cols=184 Identities=10% Similarity=-0.050 Sum_probs=94.9
Q ss_pred HHhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356 241 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320 (462)
Q Consensus 241 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (462)
+...++.|+.+....+++.+.+.|..++ ..|..-++.+ ...+..|+.+-+..+++ .|
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~~~~~g~t~L-~~A~~~~~~~~v~~Ll~---------~g 69 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPL-HLAVITTLPSVVRLLVT---------AG 69 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC-------------CCCTTSCCHH-HHHHHTTCHHHHHHHHH---------TT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------cccccCCCHH-HHHHHcCCHHHHHHHHH---------cC
Confidence 3444566888888888877777776543 1232223333 33445666654444432 35
Q ss_pred CCCchhH--HHHHHHHHHhcCCcchHHHHhccCC----C---CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356 321 YRNNVIV--NTVLIDMYAKCGSVDLAPMFFDRTL----D---KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391 (462)
Q Consensus 321 ~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~----~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 391 (462)
..++... -.+.+...+..|+.+-+..+++... . .|..-++.|..+. ..|+. ++++.+.+.|..++.
T Consensus 70 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~----~~~~~Ll~~g~~~~~ 144 (241)
T 1k1a_A 70 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV-NTECQ----ETVQLLLERGADIDA 144 (241)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCTTC
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH-HcCCH----HHHHHHHHcCCCccc
Confidence 4443211 1123444556788877777777653 1 2333444554443 45664 455566666666653
Q ss_pred hH---HHHHHHHHHhcCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCC
Q 036356 392 QH---YARVVDLLARAGYSNHAFKFIMNMPIEL---RLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDK 458 (462)
Q Consensus 392 ~~---~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~ 458 (462)
.. -.+.+...++.|+.+-+..+++.- ..+ |....+.|..+ +..|+.+ .+..+ ++.|..|+.
T Consensus 145 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A-~~~~~~~-~v~~L---l~~ga~~~~ 211 (241)
T 1k1a_A 145 VDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSA-SGRGLLP-LVRTL---VRSGADSSL 211 (241)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHH-HHHTCHH-HHHHH---HHTTCCTTC
T ss_pred ccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHH-HHcCCHH-HHHHH---HhcCCCCCC
Confidence 22 234445556778887777777653 222 22223333333 4456643 33333 345555543
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.63 E-value=70 Score=24.45 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~ 324 (462)
+++..+|..|..+|+. .--+..|......+-..|++.+|.++|.. -...+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG---------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~-----Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIG---------------TLSSPLYIAWAGHLEAQGELQHASAVLQR-----GIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTT---------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHH-----HHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCccH
Confidence 4588999999999885 45667788888888899999999999987 445566663
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.95 E-value=15 Score=27.29 Aligned_cols=73 Identities=12% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC--cccHHHHhhccCCCCcchHHHHHHH
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS--VDLAPMFFDRTLDKDVVMRSAMIVG 214 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~ 214 (462)
.+.++.-|...|+.++|.+.++++ ...... ...+...+..++-+.++ .+.+..++..+...+..+-..+..|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL-----~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKEL-----EVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-----TCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh-----CCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 345677777888888888888886 211111 12333444444444322 2445555555555555555555555
Q ss_pred H
Q 036356 215 Y 215 (462)
Q Consensus 215 ~ 215 (462)
+
T Consensus 84 f 84 (129)
T 2nsz_A 84 Y 84 (129)
T ss_dssp H
T ss_pred H
Confidence 5
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=53.31 E-value=70 Score=24.12 Aligned_cols=77 Identities=9% Similarity=-0.063 Sum_probs=54.1
Q ss_pred CCCchhHHHHHHHHHHhcCC---cchHHHHhccCCC--C--CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--
Q 036356 321 YRNNVIVNTVLIDMYAKCGS---VDLAPMFFDRTLD--K--DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH-- 391 (462)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-- 391 (462)
-.|+..+--.+..++.+..+ ..++..+++.+.. | .....-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~Q 112 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 112 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHH
Confidence 35676666667777777665 4467777776652 3 223445677899999999999999999999 88973
Q ss_pred -hHHHHHHH
Q 036356 392 -QHYARVVD 399 (462)
Q Consensus 392 -~~~~~li~ 399 (462)
.+...+|.
T Consensus 113 A~~Lk~~Ie 121 (144)
T 1y8m_A 113 VGALKSMVE 121 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34444443
No 283
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.79 E-value=57 Score=22.87 Aligned_cols=78 Identities=15% Similarity=-0.036 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
..++|.-+-+-+...+. ....--+=+..+...|++++|..+.+... -||...|-+|-.. +.|-.+.+...+.++.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 34677777777766443 22222233345677888888888888876 5888888777655 3455555555554554
Q ss_pred hcC
Q 036356 451 DEG 453 (462)
Q Consensus 451 ~~~ 453 (462)
..|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 444
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.88 E-value=45 Score=30.74 Aligned_cols=106 Identities=12% Similarity=-0.036 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-----CCccchH
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-----KDVVMRS 360 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 360 (462)
.+...+...|.+.|++++|.+.|.++... ..+...-...+-.+++.+...+++..+....++... +|....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~---~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSK---AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHH---HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 46778999999999999999999995432 123333466788889999999999999888877641 2222211
Q ss_pred H----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 036356 361 A----MTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHY 394 (462)
Q Consensus 361 ~----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 394 (462)
. -...+...+++..|...|-+....--..+...+
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~ 246 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSY 246 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhH
Confidence 1 122234568888888888777664333333333
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.20 E-value=1e+02 Score=25.36 Aligned_cols=54 Identities=9% Similarity=0.186 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~ 324 (462)
+....+|..|..+|+. .--...|......+-..|++.+|..+|.. -...+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG---------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~-----Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIG---------------QESSIFYEEYANYFESRGLFQKADEVYQK-----GKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCS---------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHH-----HHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcc---------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCccH
Confidence 5888999999999985 45667788888888899999999999988 445566663
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.90 E-value=88 Score=24.26 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCc
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 324 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~ 324 (462)
+....+|..|..+|+. .--+..|......+-..|++.+|.++|.. -...+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG---------------~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~-----Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIG---------------VSLAQFYISWAEEYEARENFRKADAIFQE-----GIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSS---------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHH-----HHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcc---------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCcH
Confidence 4577888889888885 45566677777778888999999999887 445566664
No 287
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=49.22 E-value=1e+02 Score=24.87 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=27.1
Q ss_pred HHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCch--HHHHHHHHHHhcCCcccHHHHhhcc
Q 036356 141 ISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI--VNTVLIDMYAKCGSVDLAPMFFDRT 200 (462)
Q Consensus 141 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m 200 (462)
+...+..|+.+-+..+++ .|..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 15 L~~A~~~g~~~~v~~Ll~---------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 15 LHAAAEAGHVDICHMLVQ---------AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHTCHHHHHHHHH---------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHcCcHHHHHHHHH---------cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 444566677664444433 33333321 1123455556678887777777653
No 288
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=47.88 E-value=55 Score=27.84 Aligned_cols=118 Identities=14% Similarity=-0.042 Sum_probs=75.8
Q ss_pred HhhcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCC
Q 036356 242 DCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEY 321 (462)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 321 (462)
....+.|.+++++.....-++.. +.|...-..++..+|-.|++++|.+-++.... .....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-----------------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-----------------PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-----------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchh
Confidence 34567889999998888888765 35888888899999999999999998877321 12223
Q ss_pred CCchhHHHHHHHHHHhcCCcchHHHHhccCCCC----Cccch-HHHHHHHH--hcCChHHHHHHHHHHHHC
Q 036356 322 RNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK----DVVMR-SAMTVGYG--LHGLGEEGWVLFHHIRKH 385 (462)
Q Consensus 322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~li~~~~--~~~~~~~a~~~~~~m~~~ 385 (462)
.|...+|..+|.+=... .++|..-..| ....| ..|+.+.. ..|+.++|.++-....+.
T Consensus 65 ~~~a~~yr~lI~aE~~R------~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 65 LPGASQLRHLVKAAQAR------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH------HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 34455666666542221 2344433322 11223 34555544 358889998888887663
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.11 E-value=12 Score=28.71 Aligned_cols=73 Identities=12% Similarity=0.241 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCC--cccHHHHhhccCCCCcchHHHHHHH
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGS--VDLAPMFFDRTLDKDVVMRSAMIVG 214 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~ 214 (462)
.+.++.-|...|+.++|.+.++++ ...... ...+...+..++-+.++ .+.+..++..+...+..+-+.+..|
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL-----~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~G 85 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL-----EVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 85 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-----TCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh-----CCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 345677777778888888888876 211111 12233344444443222 2345555555555555555555555
Q ss_pred H
Q 036356 215 Y 215 (462)
Q Consensus 215 ~ 215 (462)
+
T Consensus 86 f 86 (152)
T 2ion_A 86 Y 86 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=45.72 E-value=2.2e+02 Score=27.67 Aligned_cols=93 Identities=5% Similarity=-0.044 Sum_probs=55.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-----HHHHHHHHHHHHccC
Q 036356 363 TVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELR-----LSVRRALLSAWKIPM 437 (462)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-----~~~~~~l~~~~~~~~ 437 (462)
+..+...|....|...|..+.+. . +......+.......|.++.++........... +.-|..++....+.-
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~ 464 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGK 464 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTS
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHc
Confidence 45567788888888888887763 2 333334555555677888888776665521111 112455666666555
Q ss_pred ChHHHHHHHHhhhhcCCCCCC
Q 036356 438 QQWENMLQTIRGIDEGEKTDK 458 (462)
Q Consensus 438 ~~~~a~~~~~~~~~~~~~pd~ 458 (462)
.++.++..-.-..+.++.|+.
T Consensus 465 gv~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 465 EIPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp SSCHHHHHHHHHHHHTTCTTC
T ss_pred CCCHHHHHHHHHHhCCCCCCC
Confidence 566665443445666777654
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.40 E-value=1.8e+02 Score=26.42 Aligned_cols=114 Identities=9% Similarity=0.043 Sum_probs=49.4
Q ss_pred HHhcCCcchHHHHhccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhcCChHH
Q 036356 335 YAKCGSVDLAPMFFDRTLDK---DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH--YARVVDLLARAGYSNH 409 (462)
Q Consensus 335 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~ 409 (462)
.+..|..+-...+++.-..+ |..-++.|..+ +..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-
T Consensus 252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 326 (437)
T 1n11_A 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV-AQEGHVP----VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 326 (437)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH-HHHTCHH----HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHH
T ss_pred HHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHH
Confidence 34455555555555443322 22223333333 3445544 3344444455444211 1122333455677766
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCC
Q 036356 410 AFKFIMNM-P-IELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDK 458 (462)
Q Consensus 410 A~~~~~~m-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~ 458 (462)
+.-+++.- . -..|...++.|..+. ..|+. +.+.. .++.|..|+.
T Consensus 327 v~~Ll~~gad~n~~~~~g~t~L~~A~-~~g~~-~iv~~---Ll~~ga~~~~ 372 (437)
T 1n11_A 327 VKFLLQHQADVNAKTKLGYSPLHQAA-QQGHT-DIVTL---LLKNGASPNE 372 (437)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCH-HHHHH---HHHTTCCSCC
T ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHH-HCChH-HHHHH---HHHCcCCCCC
Confidence 66666543 1 112333344444443 34553 33333 3455666654
No 292
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=44.76 E-value=30 Score=21.50 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=27.0
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhhhcCCCCCC
Q 036356 408 NHAFKFIMNM-PIELRLSVRRALLSAWKIPMQQWENMLQTIRGIDEGEKTDK 458 (462)
Q Consensus 408 ~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~pd~ 458 (462)
++.++.+.+| + .-|..+....+.++ .|+.+.|+..+.+|-..+..|+.
T Consensus 10 ee~l~~L~emFP-~ld~~~I~~vL~a~--~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFP-NMDQEVIRSVLEAQ--RGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCS-SSCHHHHHHHHTTT--TTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHHHc--CCCHHHHHHHHHcCcCCCCCCCC
Confidence 4555555555 2 12344444444443 36677777777777766666653
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.34 E-value=1.1e+02 Score=26.70 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCcchHHHHhccCCCCCc---cchHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 036356 328 NTVLIDMYAKCGSVDLAPMFFDRTLDKDV---VMRSAMTVGYGLHGL--GEEGWVLFHHIRKHGIEP 389 (462)
Q Consensus 328 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 389 (462)
...++.-|...|+.++|.+.++++..|.. ..+..+..++-+.++ .+...+++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 45667778788888888888888876521 223344444444332 345667777777655544
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.10 E-value=83 Score=26.25 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=7.2
Q ss_pred HhcCChHHHHHHHHh
Q 036356 402 ARAGYSNHAFKFIMN 416 (462)
Q Consensus 402 ~~~g~~~~A~~~~~~ 416 (462)
+..|+.+-+..+++.
T Consensus 156 ~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 156 AEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHh
Confidence 334555555555544
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.54 E-value=86 Score=26.03 Aligned_cols=84 Identities=11% Similarity=-0.028 Sum_probs=47.3
Q ss_pred HHHHHHhcCCcchHHHHhccCCC-----CC-----ccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTLD-----KD-----VVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQHYARVVDL 400 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 400 (462)
-++.+....++++|..++++..+ ++ ...-...+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 36667777888888777775541 11 111122233333333334444455555 32 4455666666777
Q ss_pred HHhcCChHHHHHHHHhC
Q 036356 401 LARAGYSNHAFKFIMNM 417 (462)
Q Consensus 401 ~~~~g~~~~A~~~~~~m 417 (462)
+.+.|+.++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77788888887777654
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.16 E-value=84 Score=24.37 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCch
Q 036356 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI 175 (462)
Q Consensus 100 ~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 175 (462)
+....+|..|.+.|+ ..--...|-.....+-..|++.+|.++|+.= ...+-+|-..
T Consensus 77 ~~p~~if~~L~~~~I---------------G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G-----i~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGI---------------GVSLAQFYISWAEEYEARENFRKADAIFQEG-----IQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTS---------------STTBHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCc---------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHcCCCcHHH
Confidence 447778888888887 2344456777777888889999999998884 6666666543
No 297
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=39.39 E-value=98 Score=21.75 Aligned_cols=78 Identities=13% Similarity=-0.101 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhh
Q 036356 371 LGEEGWVLFHHIRKHGIEPRHQHYARVVDLLARAGYSNHAFKFIMNMPIELRLSVRRALLSAWKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 371 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 450 (462)
..++|.-+-+-+...+. ....--+=+..+...|++++|..+.+... -||...|-+|-.. +.|-...+...+.++.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 34677777777666443 22222233345677888888888888876 5888888777655 3355555554554444
Q ss_pred hcC
Q 036356 451 DEG 453 (462)
Q Consensus 451 ~~~ 453 (462)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 443
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.83 E-value=1.5e+02 Score=23.74 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=26.7
Q ss_pred HHHhCCChhHHHHHHHHhhhhhhhhcCCCCCc--hHHHHHHHHHHhcCCcccHHHHhhccC
Q 036356 143 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV--IVNTVLIDMYAKCGSVDLAPMFFDRTL 201 (462)
Q Consensus 143 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 201 (462)
..++.|+.+....+++. |..++. ..-.+.+...++.|+.+-+..+++.-.
T Consensus 15 ~A~~~g~~~~~~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 15 KATQYGIYERCRELVEA---------GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHc---------CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 34567776665555543 222221 112234555667777777777766544
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.23 E-value=1.4e+02 Score=23.24 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=31.1
Q ss_pred HHHhcCCcchHHHHhccC-C---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036356 334 MYAKCGSVDLAPMFFDRT-L---DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH 391 (462)
Q Consensus 334 ~~~~~g~~~~A~~~~~~~-~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 391 (462)
..+..|+.+-+..+++.- . .+|..-++.|..+.........-.++++.+.+.|..|+.
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 344556666666666544 2 234444555555554333334345666667777766653
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.79 E-value=1.3e+02 Score=24.39 Aligned_cols=20 Identities=5% Similarity=-0.280 Sum_probs=9.7
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 036356 365 GYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~ 384 (462)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34445555555555554443
No 301
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=37.78 E-value=1.8e+02 Score=24.33 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=9.6
Q ss_pred CCCccchHHHHHHHHhcCC
Q 036356 353 DKDVVMRSAMTVGYGLHGL 371 (462)
Q Consensus 353 ~~~~~~~~~li~~~~~~~~ 371 (462)
.++...-...+.++.+.|+
T Consensus 203 d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 4444444445555555554
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.88 E-value=1.1e+02 Score=25.08 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC
Q 036356 100 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN 173 (462)
Q Consensus 100 ~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 173 (462)
+....+|..|...|+ ..--...|-.....+-..|++.+|.++|+.= ...+-+|-
T Consensus 131 ~~p~~if~~L~~~~I---------------G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G-----i~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHI---------------GQESSIFYEEYANYFESRGLFQKADEVYQKG-----KRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTC---------------STTBHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHTCBSH
T ss_pred CCHHHHHHHHHHCCc---------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHcCCccH
Confidence 577789999999988 2345566888888888999999999999884 66666664
No 303
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.57 E-value=3.2e+02 Score=26.56 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=20.9
Q ss_pred HhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHH
Q 036356 402 ARAGYSNHAFKFIMNMPIEL--RLSVRRALLSAWKIPMQQWENMLQTI 447 (462)
Q Consensus 402 ~~~g~~~~A~~~~~~m~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~ 447 (462)
.+.|+++.|.+.|+.|+-.+ ...-.--+.+++...|+.++|...+.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~ 343 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34456666666666552221 12222333444445555555544433
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.83 E-value=78 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCChhHHHHHhhH
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPK 310 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~ 310 (462)
.+.++.-|...|+.++|.+.+++
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~e 32 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555555555555555555
No 305
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=33.50 E-value=2.6e+02 Score=24.92 Aligned_cols=63 Identities=6% Similarity=-0.072 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCh--HHHHHHHHhhhhcCC
Q 036356 392 QHYARVVDLLARAGYSNHAFKFIMNMPIEL--RLSVRRALLSAWKIPMQQ--WENMLQTIRGIDEGE 454 (462)
Q Consensus 392 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 454 (462)
.....++.-|...|+.++|.+.+++++... ...+..++..++-+.++. +.....+......|+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 346788999999999999999999995321 234556666666654332 223334444444443
No 306
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.98 E-value=2.5e+02 Score=24.55 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=45.9
Q ss_pred HHHHHhcCCcchHHHHhccCCC--------CCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHH
Q 036356 332 IDMYAKCGSVDLAPMFFDRTLD--------KDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH--YARVVDLL 401 (462)
Q Consensus 332 i~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~ 401 (462)
+...+..|+.+-+..+++.-.. .|..-++.|..+ +..|+.+ +++.+.+.|..++... -.+-+...
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA-ILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHH-HTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 4445567888877777765332 233344444443 3566654 5555566777766322 12233444
Q ss_pred HhcCChHHHHHHHHh
Q 036356 402 ARAGYSNHAFKFIMN 416 (462)
Q Consensus 402 ~~~g~~~~A~~~~~~ 416 (462)
++.|..+-+.-+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 566888887777775
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.64 E-value=1.8e+02 Score=23.22 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhc
Q 036356 140 MISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDR 199 (462)
Q Consensus 140 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (462)
.+...++.|+++....+++.- ...-..++..-++ .+...+..|+.+-+..+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILAD-----KSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC-----GGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHT
T ss_pred hHHHHHHhCCHHHHHHHHHhc-----hhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHh
Confidence 355667778888777777652 1111122222223 34445566777766666664
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.57 E-value=84 Score=23.97 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHhhccCCC
Q 036356 176 VNTVLIDMYAKCGSVDLAPMFFDRTLDK 203 (462)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 203 (462)
..+.++.-|...||.++|.+.++++..|
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 3466888899999999999999998866
No 309
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=29.37 E-value=1.4e+02 Score=26.64 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHh
Q 036356 137 RNAMISGYAKNGYAEEAVKLFPKW 160 (462)
Q Consensus 137 ~~~li~~~~~~g~~~~a~~~~~~m 160 (462)
-..+|.-|...|+.++|.+.++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 467788888889999999998886
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.34 E-value=2e+02 Score=22.27 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=35.9
Q ss_pred HHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCcccHHHHhhccCCC---CcchHHHHHHHHHh
Q 036356 142 SGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK---DVVMRSAMIVGYGL 217 (462)
Q Consensus 142 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~ 217 (462)
...+..|+.+....++..- ...--..|..-++ .+...++.|+.+-+..+++.-..+ +...++.+..+...
T Consensus 10 ~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDT-----TYQVDEVDTEGNT-PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCT-----TCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHcC-----CCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 3446678888777777552 1011112222223 444556778887777777754332 33334444444433
No 311
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.87 E-value=2.2e+02 Score=22.73 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=29.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCC---chHHHHHHHHHHhcCCcccHHHHhhc
Q 036356 139 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNN---VIVNTVLIDMYAKCGSVDLAPMFFDR 199 (462)
Q Consensus 139 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (462)
+.+...++.|+.+-+..+++. |..++ ...-.+.+...+..|+.+-+..+++.
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~---------~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISK---------GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT---------TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHhCCHHHHHHHHHc---------CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc
Confidence 355666778887766555544 22222 11122345555667777777766665
No 312
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.40 E-value=80 Score=19.56 Aligned_cols=34 Identities=12% Similarity=-0.020 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeeeHHHHHHHH-HhCC
Q 036356 99 LEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLRNAMISGY-AKNG 148 (462)
Q Consensus 99 ~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~~~~li~~~-~~~g 148 (462)
.++|++.|-+|++..- .++..+|.-.|... ++..
T Consensus 2 ~eEae~aF~~lL~~~~----------------V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQ----------------VDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTT----------------CCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcC----------------CCCCCcHHHHHHHhccCCC
Confidence 4678888999886654 58889999999988 5554
No 313
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.96 E-value=5.2e+02 Score=26.52 Aligned_cols=155 Identities=12% Similarity=-0.019 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCC---hhHHHHHhhHHHHHHHHh---hCCCCchhHHHHHHHHHHhcCCcchHHHHhccCCCC-CccchH
Q 036356 288 WNAMISGYAKNGY---AEEAVKLFPKWMDYYIGK---SEYRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLDK-DVVMRS 360 (462)
Q Consensus 288 ~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 360 (462)
-..++...|+.|. .++|.+.|... +.. ..+.||... .+...-.+.|.-++-..+++..... +..--.
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~----~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~ 762 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQW----MSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQLVNEAD 762 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----HTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH----hhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccCCHHHHH
Confidence 3446677777776 44566677663 322 225566432 2222223456555444555555433 333346
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcC-ChHHHHHHHHhC------CCCCCHHHHHHHHHH
Q 036356 361 AMTVGYGLHGLGEEGWVLFHHIRKHG-IEPRHQHYARVVDLLARAG-YSNHAFKFIMNM------PIELRLSVRRALLSA 432 (462)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m------~~~p~~~~~~~l~~~ 432 (462)
.++.+++...+.+...++++...... +++. ... .++.+..... -.+.|.+.+.+- .+......+..++.+
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~ 840 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQG 840 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 78888888888888888888776543 4443 222 2333333322 234555555432 222344456777777
Q ss_pred HHccCChHHHHHHHHhhh
Q 036356 433 WKIPMQQWENMLQTIRGI 450 (462)
Q Consensus 433 ~~~~~~~~~a~~~~~~~~ 450 (462)
....-..++.+..+.+-.
T Consensus 841 ~~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 841 VTRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HHTTCCSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 766655555555555443
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.72 E-value=2e+02 Score=23.54 Aligned_cols=131 Identities=13% Similarity=0.045 Sum_probs=71.8
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCchh-------HHHHHHHHHH--hcCCcchHHHHhccCC------------
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVI-------VNTVLIDMYA--KCGSVDLAPMFFDRTL------------ 352 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-------~~~~li~~~~--~~g~~~~A~~~~~~~~------------ 352 (462)
..++.|+.+....+++. +...|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~-----l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSF-----LLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHTCGGGGTTHHHH-----HHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHhCCHHHHHHHHHH-----HHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 34556777776666654 33445544422 2233443332 5677777777776421
Q ss_pred --CCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH----------------HHHHHHHHHhcCChHHHHHHH
Q 036356 353 --DKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH----------------YARVVDLLARAGYSNHAFKFI 414 (462)
Q Consensus 353 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~ 414 (462)
..|..-++.|..+. ..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 86 ~~~~d~~g~t~L~~A~-~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAI-ERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp BCCSSEESBCHHHHHH-HTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccccCCCCHHHHHH-HcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 12334455655554 467755 4555566677776442 224444556788888888888
Q ss_pred Hh--CCC---CCCHHHHHHHHHHHH
Q 036356 415 MN--MPI---ELRLSVRRALLSAWK 434 (462)
Q Consensus 415 ~~--m~~---~p~~~~~~~l~~~~~ 434 (462)
+. .+. ..|...++.|..++.
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVA 185 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred hccccCCCCcccCCCCCcHHHHHHH
Confidence 73 322 234444555655554
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.57 E-value=2.1e+02 Score=21.32 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=36.0
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCccc
Q 036356 136 LRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192 (462)
Q Consensus 136 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 192 (462)
.-..++..+...+..-.|.++++.+ .+.+...+..|..--++.+...|-+..
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l-----~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKAL-----EGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHH-----GGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH-----HHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 3445666666667777888888887 666666666666667777888775543
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.16 E-value=2.1e+02 Score=24.04 Aligned_cols=18 Identities=6% Similarity=0.283 Sum_probs=9.2
Q ss_pred hcCCcchHHHHhccCCCC
Q 036356 337 KCGSVDLAPMFFDRTLDK 354 (462)
Q Consensus 337 ~~g~~~~A~~~~~~~~~~ 354 (462)
+.|+.+-+.-+++.-..+
T Consensus 204 ~~~~~~~v~~Ll~~gad~ 221 (285)
T 3kea_A 204 DNKDIEMLQALFKYDINI 221 (285)
T ss_dssp HHTCHHHHHHHTTSCBCS
T ss_pred HcCCHHHHHHHHHcCCCC
Confidence 345555555555554433
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.46 E-value=2.5e+02 Score=29.11 Aligned_cols=105 Identities=8% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHhcCCcchHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------------------
Q 036356 331 LIDMYAKCGSVDLAPMFFDRTLDKDVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRH------------------- 391 (462)
Q Consensus 331 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------------------- 391 (462)
++..+...|..+-|..+..-.......+| .+..+|...|++++|.+.|++.-. |+.++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~y-v~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHH-HHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccccc
Q ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHH----HHHHHHHHHHccC
Q 036356 392 ----QHYARVVDLLARAGYSNHAFKFIMNM---PIELRLS----VRRALLSAWKIPM 437 (462)
Q Consensus 392 ----~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~----~~~~l~~~~~~~~ 437 (462)
.-|..++..|-+.+.++.+.++-+.. --..|.. .|..++++.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.34 E-value=2.3e+02 Score=22.62 Aligned_cols=149 Identities=8% Similarity=-0.022 Sum_probs=74.9
Q ss_pred HHhhcCccchhhHHHHHHHHHHhcCCcchhHHHHHhhhcCCCCCeee--HHHHHHHHHhCCChhHHHHHHHHhhhhhhhh
Q 036356 90 LDCSCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTL--RNAMISGYAKNGYAEEAVKLFPKWMDYYIGK 167 (462)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~l~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 167 (462)
|...++.|+.+.+..+++.+.+.|. .++... -.+.+...+..|+.+-+..++ +
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~----------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll---------~ 67 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGR----------------ELDIYNNLRQTPLHLAVITTLPSVVRLLV---------T 67 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTC----------------CSCCCCTTSCCHHHHHHHTTCHHHHHHHH---------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC----------------CCCcccccCCCHHHHHHHcCCHHHHHHHH---------H
Confidence 4445567888888888887777776 444332 123445556677766444443 3
Q ss_pred cCCCCCch--HHHHHHHHHHhcCCcccHHHHhhccC-------CCCcchHHHHHHHHHhCchHHHHHHHhhhc-CCc---
Q 036356 168 SEYRNNVI--VNTVLIDMYAKCGSVDLAPMFFDRTL-------DKDVVMRSAMIVGYGLHEWSAFGSFDGLLS-NEE--- 234 (462)
Q Consensus 168 ~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~~~~a~~~~~~m~~-~~~--- 234 (462)
.|..++.. .-.+.+...+..|+.+-+..+++... ..+...++.+..+......+..+++-+... ++.
T Consensus 68 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 147 (241)
T 1k1a_A 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI 147 (241)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence 34443322 11234555667888888877777643 123333445544444333343333333222 221
Q ss_pred chHHHHHHhhcCccchhhhHHHHHHHHHhCCCc
Q 036356 235 NEYGTALDCSCDLEFLEQGKIVHGFMIKLGLEL 267 (462)
Q Consensus 235 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 267 (462)
..-.+.+...++.|+. ++.+.+.+.|..+
T Consensus 148 ~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~ 176 (241)
T 1k1a_A 148 KSGRSPLIHAVENNSL----SMVQLLLQHGANV 176 (241)
T ss_dssp TTCCCHHHHHHHTTCH----HHHHHHHHTTCCT
T ss_pred cCCCcHHHHHHHcCCH----HHHHHHHHcCCCC
Confidence 1112233333344444 3455556666543
No 319
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=23.44 E-value=6.3e+02 Score=26.10 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=59.9
Q ss_pred hcCccchhhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHH---HHHHHHHcCCChhHHHHHhhHHHHHHHHhhC
Q 036356 244 SCDLEFLEQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWN---AMISGYAKNGYAEEAVKLFPKWMDYYIGKSE 320 (462)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 320 (462)
+.-.|+.+.+..+.+.+.... .|.. -|. ++.-+|+-.|+.....+++.. +.. .
T Consensus 534 ll~~g~~e~~~~li~~L~~~~-----------------dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~-----~~~-d 589 (963)
T 4ady_A 534 LINYGRQELADDLITKMLASD-----------------ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHV-----AVS-D 589 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHCS-----------------CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHH-----HHH-C
T ss_pred hhhCCChHHHHHHHHHHHhCC-----------------CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHH-----hcc-C
Confidence 335666677777766665531 1222 222 223356677777666667665 222 2
Q ss_pred CCCchhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccch--HHHHHHHHhcCCh-HHHHHHHHHHHH
Q 036356 321 YRNNVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMR--SAMTVGYGLHGLG-EEGWVLFHHIRK 384 (462)
Q Consensus 321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~~~~-~~a~~~~~~m~~ 384 (462)
...++.....+.-++...|+.+.+.++++.+.+ .|..+- ..+.-+....|.. .+|.+++..+..
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 222333333333344456777777777776553 232222 2333334444443 567778888764
No 320
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.10 E-value=1.3e+02 Score=24.76 Aligned_cols=135 Identities=13% Similarity=-0.007 Sum_probs=72.0
Q ss_pred HHHcCCChhHHHHHhhHHHHHHHHhhCCCCch-------hHHHHHHHHHHhc---CCcchHHHHhccCCCC---------
Q 036356 294 GYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNV-------IVNTVLIDMYAKC---GSVDLAPMFFDRTLDK--------- 354 (462)
Q Consensus 294 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~---g~~~~A~~~~~~~~~~--------- 354 (462)
..++.|+.+....+++. +...|..++. .-.+.|..+ +.. |+.+-+..+++.-..+
T Consensus 8 ~A~~~g~~~~v~~ll~~-----l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEY-----LRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp HHHHHTCGGGGTTHHHH-----HHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred HHHHcCCHHHHHHHHHH-----HHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 34566777766555554 3344544332 333344433 344 7888777777643221
Q ss_pred -----CccchHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH---------------HHHHHHHHHhcCChHHHHHHH
Q 036356 355 -----DVVMRSAMTVGYGLHGLGEEGWVLFHHIRKHGIEPRHQH---------------YARVVDLLARAGYSNHAFKFI 414 (462)
Q Consensus 355 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---------------~~~li~~~~~~g~~~~A~~~~ 414 (462)
|..-++.|..+. ..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.-++
T Consensus 82 ~~~~~d~~g~t~L~~A~-~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAI-EKRSLQ----CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp CCCSTTTTTCCHHHHHH-HTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccCCCHHHHHH-HcCCHH----HHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 233455555554 566654 4455556676666432 223444456678888888888
Q ss_pred Hh--CCC---CCCHHHHHHHHHHHHc-cCCh
Q 036356 415 MN--MPI---ELRLSVRRALLSAWKI-PMQQ 439 (462)
Q Consensus 415 ~~--m~~---~p~~~~~~~l~~~~~~-~~~~ 439 (462)
+. -+. ..|..-++.|..++.. .+..
T Consensus 157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~ 187 (256)
T 2etb_A 157 ENPHQPASLEATDSLGNTVLHALVMIADNSP 187 (256)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH
T ss_pred hccccCCCcCccCCCCCCHHHHHHHcccCCc
Confidence 83 322 2344445556555542 3443
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.95 E-value=2e+02 Score=21.68 Aligned_cols=53 Identities=8% Similarity=0.112 Sum_probs=37.3
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHhcCCccc
Q 036356 135 TLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVDL 192 (462)
Q Consensus 135 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 192 (462)
.--..++..+...+..-.|.++++.+ .+.+...+..|..--++.+...|-+..
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l-----~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSI-----RQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHH-----HHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-----HHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 33445666777777788889999887 666666676666667788888876543
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.78 E-value=2e+02 Score=23.75 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=51.3
Q ss_pred HHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCC----chhHHHHHHHHHHhcCCcchHHHHhccCCC-CCccchHHHHH
Q 036356 290 AMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRN----NVIVNTVLIDMYAKCGSVDLAPMFFDRTLD-KDVVMRSAMTV 364 (462)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~ 364 (462)
--++.+....++++|..++++.-. ... +.++ ........+..-.....-.-+..+.+++.. .+...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~-~l~--~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES-QLE--DLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HHH--HTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHH--hCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 358899999999999999998432 222 2221 111112222222222222233334333322 22333445667
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 036356 365 GYGLHGLGEEGWVLFHHIRK 384 (462)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~ 384 (462)
.+.+-|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 78888999999888877765
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.37 E-value=2.5e+02 Score=21.07 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcc
Q 036356 286 TLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342 (462)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 342 (462)
.--..++..+...+..-.|.++++. +.+.+...+..|.---++.+.+.|-+.
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~-----l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHS-----IRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHH-----HHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHH-----HHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3445566777777778889999988 767777777777666788888888754
No 324
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.95 E-value=2.5e+02 Score=20.89 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHHHHHHHHhcCCcc
Q 036356 288 WNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTVLIDMYAKCGSVD 342 (462)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 342 (462)
-..++..+...+..-.|.++++. +.+.+...+..|.---++.+.+.|-+.
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~-----l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKA-----LEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHH-----HGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHH-----HHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34556666666777788888888 767777777777666788888888654
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.58 E-value=2.7e+02 Score=21.29 Aligned_cols=56 Identities=5% Similarity=0.073 Sum_probs=39.9
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHhhhhhhhhc--CCCCCchHHHHHHHHHHhcCCccc
Q 036356 131 QPNVTLRNAMISGYAKNGYAEEAVKLFPKWMDYYIGKS--EYRNNVIVNTVLIDMYAKCGSVDL 192 (462)
Q Consensus 131 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~ 192 (462)
++ +.--..++..+...+..-.|.++++.+ .+. +...+..|..--++.+...|-+.+
T Consensus 30 r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l-----~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 30 KY-TKQREVLLKTLYHSDTHYTPESLYMEI-----KQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp CC-CHHHHHHHHHHHSCCSCBCHHHHHHHH-----HHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CC-CHHHHHHHHHHHhCCCCCCHHHHHHHH-----HhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 44 334556777777878888899999997 555 666676666667788888886554
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.16 E-value=2.6e+02 Score=21.53 Aligned_cols=52 Identities=8% Similarity=-0.154 Sum_probs=39.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC--CHhHHHHHHH-H-----HHhcCChHHHHHHHHhC
Q 036356 366 YGLHGLGEEGWVLFHHIRKHGIEP--RHQHYARVVD-L-----LARAGYSNHAFKFIMNM 417 (462)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m 417 (462)
+...|++-+|-++|++.-...-.| ....|..||+ . ..+.|++..|..++.+.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 335599999999999998865556 4567777777 2 23579999999988876
No 327
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.35 E-value=2.2e+02 Score=19.72 Aligned_cols=63 Identities=6% Similarity=0.092 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHhCCCcchHHHHHHHHhhcCCCCHhHHHHHHHHHHcCCChhHHHHHhhHHHHHHHHhhCCCCchhHHHH
Q 036356 251 EQGKIVHGFMIKLGLELESDLLISLTAVCRYQPNVTLWNAMISGYAKNGYAEEAVKLFPKWMDYYIGKSEYRNNVIVNTV 330 (462)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ 330 (462)
-.+.++.++....|+. |+..+...++..|...+. + +.++..+++--.....|..|+..+.+.
T Consensus 26 Vsae~L~eEfdefGi~----------------~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 26 ASAQQLAEELQIFGLD----------------CEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CCHHHHHHHHHHHTCB----------------CCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred ccHHHHHHHHHHcCCC----------------CCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 3566777888888886 444555566655555543 2 444444443222445678888777665
Q ss_pred H
Q 036356 331 L 331 (462)
Q Consensus 331 l 331 (462)
+
T Consensus 88 F 88 (101)
T 2keb_A 88 F 88 (101)
T ss_dssp H
T ss_pred H
Confidence 4
No 328
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.31 E-value=1.8e+02 Score=21.28 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=6.3
Q ss_pred hcCChHHHHHHHHh
Q 036356 403 RAGYSNHAFKFIMN 416 (462)
Q Consensus 403 ~~g~~~~A~~~~~~ 416 (462)
..|+.+-+.-+++.
T Consensus 110 ~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 110 QEGHTAVVSFLAAE 123 (156)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HhChHHHHHHHHhc
Confidence 34454444444443
Done!