BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036359
(657 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 235 bits (599), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 215/381 (56%), Gaps = 41/381 (10%)
Query: 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNAD 354
+RSPI +LGHVD GKT LLD IRG+ V EAGGITQ IGAT P++ I+
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 355 AKLK--VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS 412
++ +PGL +DTPGHE+FT LR G L D+AIL+VDI +G KPQT E+L++L+
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 413 VDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELY 472
F++A +K D+++GW+ + P + +Q V+ + ++ ++ + E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 473 YKNKEMGKTFSIVPTSAIRHK------TMVKKLA---FRNEVQC--------TILEVKVC 515
+ + SI+P SAI + TM+ LA R +++ TILEVK
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 516 EGYGTTIDVVLINGVLHEGDKIV-----EPIDTKIQALLTPHPMKELR-VKGAYQHHKEI 569
G G TID V+ +G+L + D I + I T+I++LL P P++E+R + +Q E+
Sbjct: 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEV 302
Query: 570 KAAQGIKITAQGLQDAIAGTSLYVVGPNDDLEDVKKAAMEEMKSVTEAASEGMKSVMSKV 629
AA GIKI A G+ D +AG+ L VV D E V++ + E++ + K+
Sbjct: 303 VAAAGIKIVAPGIDDVMAGSPLRVV---TDPEKVREEILSEIEDI-------------KI 346
Query: 630 DKTCEGVCMQASTWGSLEALL 650
D GV ++A T GSLEA++
Sbjct: 347 DTDEAGVVVKADTLGSLEAVV 367
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 211/381 (55%), Gaps = 41/381 (10%)
Query: 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNAD 354
+RSPI +LGHVD GKT LLD IRG+ V EAGGITQ IGAT P + I+
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKK 62
Query: 355 AKLK--VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS 412
++ +PGL +DTPGHE+FT LR G L D+AIL+VDI +G KPQT E+L++L+
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYR 122
Query: 413 VDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELY 472
F++A +K D+++GW+ + P + +Q V+ + ++ ++ + E+G +E +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 473 YKNKEMGKTFSIVPTSAIRHK------TMVKKLA---FRNEVQC--------TILEVKVC 515
+ + SI+P SAI + T + LA R +++ TILEVK
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTXLXGLAQQYLREQLKIEEDSPARGTILEVKEE 242
Query: 516 EGYGTTIDVVLINGVLHEGDKIV-----EPIDTKIQALLTPHPMKELR-VKGAYQHHKEI 569
G G TID V+ +G+L + D I + I T+I++LL P P++E R + +Q E+
Sbjct: 243 TGLGXTIDAVIYDGILRKDDTIAXXTSKDVISTRIRSLLKPRPLEEXRESRKKFQKVDEV 302
Query: 570 KAAQGIKITAQGLQDAIAGTSLYVVGPNDDLEDVKKAAMEEMKSVTEAASEGMKSVMSKV 629
AA GIKI A G+ D AG+ L VV D E V++ + E++ + K+
Sbjct: 303 VAAAGIKIVAPGIDDVXAGSPLRVV---TDPEKVREEILSEIEDI-------------KI 346
Query: 630 DKTCEGVCMQASTWGSLEALL 650
D GV ++A T GSLEA++
Sbjct: 347 DTDEAGVVVKADTLGSLEAVV 367
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 77/129 (59%), Gaps = 16/129 (12%)
Query: 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355
R P+ I+GHVD GKT LLD IR + V E EAGGITQ IGA V D
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-----------DK 55
Query: 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDF 415
K+ +DTPGHE+FT +R+ G + DI ILVV DG+ PQT+E+++ K +V
Sbjct: 56 KITF-----LDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPI 110
Query: 416 IIALSKADK 424
I+A++K DK
Sbjct: 111 IVAINKMDK 119
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 75/129 (58%), Gaps = 15/129 (11%)
Query: 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355
RSP+ I+GHVD GKT LLD +R T V EAGGITQ IGA + + +K T
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKIT------- 55
Query: 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDF 415
+DTPGH +F+ +R+ G + DI ILVV DG+ QT+ES+ K+ V
Sbjct: 56 --------FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI 107
Query: 416 IIALSKADK 424
++A++K DK
Sbjct: 108 VLAINKCDK 116
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 46/249 (18%)
Query: 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355
R+P+ I+GHVD GKT LL+ IR T V GEAGGITQ IGA + EN
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN------------ 50
Query: 356 KLKVPGLLV-VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD 414
G++ +DTPGH +FT++R+ G DI +LVV DG+ PQTIE++ K V
Sbjct: 51 -----GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP 105
Query: 415 FIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQF----KEQGLNTE 470
++A++K DK + D R++N ++Q+ +E G ++
Sbjct: 106 VVVAVNKIDK----------------PEADPD-------RVKNELSQYGILPEEWGGESQ 142
Query: 471 LYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFRNEVQC-TILEVKVCEGYGTTIDVVLING 529
+ + + G + + + +++ A R + ++E + +G G V++ G
Sbjct: 143 FVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREG 202
Query: 530 VLHEGDKIV 538
LH+GD ++
Sbjct: 203 TLHKGDIVL 211
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 37/196 (18%)
Query: 300 CCILGHVDAGKTRL---LDCIRGTNVQ----EGEAGGITQQIGATYFPVENIQKRTEKLN 352
I GH+D GKT L L I T+ E + GIT IG + F +EN +
Sbjct: 22 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR------- 74
Query: 353 ADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS 412
+ +VD PGH + D+A++VVD +G K QT E + +L +
Sbjct: 75 ---------ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN 125
Query: 413 VDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKM-----------RLRN-IIT 460
+ I+ ++K+D + + I K++ Q + ++++ + L+N IIT
Sbjct: 126 IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 185
Query: 461 QFKEQGL--NTELYYK 474
+ NTE Y+K
Sbjct: 186 TLNNAEIIRNTESYFK 201
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 34/141 (24%)
Query: 302 ILGHVDAGKTRLLDCIRGTNVQEGEAG------------------GITQQIGATYFPVEN 343
+L HVDAGKT L + + + E G GIT Q G T F EN
Sbjct: 7 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 66
Query: 344 IQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIE 403
K+N ++DTPGH F + D AIL++ DG++ QT
Sbjct: 67 -----TKVN-----------IIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRI 110
Query: 404 SLDLLKERSVDFIIALSKADK 424
L++ + I ++K D+
Sbjct: 111 LFHALRKMGIPTIFFINKIDQ 131
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT-----IESLDLLKERSVDFI 416
++ DTPGHE +T + G CD+AI++VD G++ QT I SL +K +
Sbjct: 106 FIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKH----IV 161
Query: 417 IALSKAD 423
+A++K D
Sbjct: 162 VAINKXD 168
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGL 362
+GHVD GKT L I T V GG + I T + D +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAAR----------GITINTSHVEYDTPTR--HY 62
Query: 363 LVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSK 421
VD PGH + G D AILVV DG PQT E + L ++ V +II L+K
Sbjct: 63 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 122
Query: 422 AD 423
D
Sbjct: 123 CD 124
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 292 EENLRSPICCILGHVDAGKT----RLLDCIRGTNVQEGEAG-----------GITQQIGA 336
++N+R+ CI+ HVD GK+ RLL+ + +E GIT ++ A
Sbjct: 3 QKNVRN--FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQA 60
Query: 337 TYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG 396
+ T KL+ ++DTPGH F+ S C+ A+L++D G
Sbjct: 61 VRMFYKAKDGNTYKLH-----------LIDTPGHVDFSYEVSRALAACEGALLLIDASQG 109
Query: 397 IKPQTIESLDLLKERSVDFIIALSKAD 423
I+ QT+ + E+ + I ++K D
Sbjct: 110 IEAQTVANFWKAVEQDLVIIPVINKID 136
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI----GATYFPVENIQKRTEKLNADAKLK 358
+GHVD GKT L I T V GG + A I T + D +
Sbjct: 302 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 359
Query: 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA 418
VD PGH + G D AILVV DG PQT E + L ++ V +II
Sbjct: 360 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 417
Query: 419 -LSKAD 423
L+K D
Sbjct: 418 FLNKCD 423
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI----GATYFPVENIQKRTEKLNADAKLK 358
+GHVD GKT L I T V GG + A I T + D +
Sbjct: 302 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 359
Query: 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA 418
VD PGH + G D AILVV DG PQT E + L ++ V +II
Sbjct: 360 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 417
Query: 419 -LSKAD 423
L+K D
Sbjct: 418 FLNKCD 423
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI----GATYFPVENIQKRTEKLNADAKLK 358
+GHVD GKT L I T V GG + A I T + D +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA 418
VD PGH + G D AILVV DG PQT E + L ++ V +II
Sbjct: 75 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 419 -LSKAD 423
L+K D
Sbjct: 133 FLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI----GATYFPVENIQKRTEKLNADAKLK 358
+GHVD GKT L I T V GG + A I T + D +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA 418
VD PGH + G D AILVV DG PQT E + L ++ V +II
Sbjct: 75 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 419 -LSKAD 423
L+K D
Sbjct: 133 FLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI----GATYFPVENIQKRTEKLNADAKLK 358
+GHVD GKT L I T V GG + A I T + D +
Sbjct: 18 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 75
Query: 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA 418
VD PGH + G D AILVV DG PQT E + L ++ V +II
Sbjct: 76 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 133
Query: 419 -LSKAD 423
L+K D
Sbjct: 134 FLNKCD 139
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI----GATYFPVENIQKRTEKLNADAKLK 358
+GHVD GKT L I T V GG + A I T + D +
Sbjct: 18 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 75
Query: 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA 418
VD PGH + G D AILVV DG PQT E + L ++ V +II
Sbjct: 76 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 133
Query: 419 -LSKAD 423
L+K D
Sbjct: 134 FLNKCD 139
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI----GATYFPVENIQKRTEKLNADAKLK 358
+GHVD GKT L I T V GG + A I T + D +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA 418
VD PGH + G D AILVV DG PQT E + L ++ V +II
Sbjct: 75 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 419 -LSKAD 423
L+K D
Sbjct: 133 FLNKCD 138
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI----GATYFPVENIQKRTEKLNADAKLK 358
+GHVD GKT L I T V GG + A I T + D +
Sbjct: 9 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 66
Query: 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA 418
VD PGH + G D AILVV DG PQT E + L ++ V +II
Sbjct: 67 --HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 124
Query: 419 -LSKAD 423
L+K D
Sbjct: 125 FLNKCD 130
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 28/147 (19%)
Query: 292 EENLRSPICCILGHVDAGKT----RLLDCIRGTNVQEGEAG-----------GITQQIGA 336
++N+R+ CI+ HVD GK+ RLL+ + +E GIT + A
Sbjct: 3 QKNVRN--FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQA 60
Query: 337 TYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG 396
+ T KL+ ++DTPGH F+ S C+ A+L++D G
Sbjct: 61 VRXFYKAKDGNTYKLH-----------LIDTPGHVDFSYEVSRALAACEGALLLIDASQG 109
Query: 397 IKPQTIESLDLLKERSVDFIIALSKAD 423
I+ QT+ + E+ + I ++K D
Sbjct: 110 IEAQTVANFWKAVEQDLVIIPVINKID 136
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 302 ILGHVDAGKTRLLDCI----RGTNVQEGEAG-----------GITQQIGATYFPVENIQK 346
I+ H+D GK+ L D I G + +E EA GIT + + +
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDG 68
Query: 347 RTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLD 406
T +LN +DTPGH F+ S C+ A+LVVD G++ QT+ +
Sbjct: 69 ETYQLN-----------FIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117
Query: 407 LLKERSVDFIIALSKAD 423
E ++ + L+K D
Sbjct: 118 TAMEMDLEVVPVLNKID 134
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 302 ILGHVDAGKTRLLDCI----RGTNVQEGEAG-----------GITQQIGATYFPVENIQK 346
I+ H+D GK+ L D I G + +E EA GIT + + +
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDG 68
Query: 347 RTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLD 406
T +LN +DTPGH F+ S C+ A+LVVD G++ QT+ +
Sbjct: 69 ETYQLN-----------FIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117
Query: 407 LLKERSVDFIIALSKAD 423
E ++ + L+K D
Sbjct: 118 TAMEMDLEVVPVLNKID 134
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 36/179 (20%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEK------LNA--- 353
+GHVD GKT L I + G GA + E I E+ +NA
Sbjct: 20 IGHVDHGKTTLTAAITKILAEGG---------GAKFKKYEEIDNAPEERARGITINAAHV 70
Query: 354 DAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSV 413
+ D PGH + G D ILVV DG PQT E L L ++ V
Sbjct: 71 EYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGV 130
Query: 414 DFIIA-LSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTEL 471
+ ++ ++KAD + Q S+ VE ++ +R ++T+F +G T +
Sbjct: 131 EHVVVYVNKADAV----------------QDSEXVE-LVELEIRELLTEFGYKGEETPI 172
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 301 CILGHVDAGKTRLLD--CIRGTNVQEGEAGGITQQIGATYFPVE--------NIQKRTEK 350
I+ H DAGKT L + + G +Q AG + + A + + I T
Sbjct: 35 AIISHPDAGKTTLTEKLLLFGGAIQ--MAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 351 LNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKE 410
+ + +V LL DTPGH+ F+ D A++V+D G++ QT + +D+ +
Sbjct: 93 MQFPYRDRVVNLL--DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM 150
Query: 411 RSVDFIIALSKADK 424
R+ + ++K D+
Sbjct: 151 RATPVMTFVNKMDR 164
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 81 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 140
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 141 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 166
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 36/179 (20%)
Query: 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEK------LNA--- 353
+GHVD GKT L I + G GA + E I E+ +NA
Sbjct: 9 IGHVDHGKTTLTAAITKILAEGG---------GAKFKKYEEIDNAPEERARGITINAAHV 59
Query: 354 DAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSV 413
+ D PGH + G D ILVV DG PQT E L L ++ V
Sbjct: 60 EYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119
Query: 414 DFIIA-LSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTEL 471
+ ++ ++KAD + Q ++ + ++ +R ++T+F +G T +
Sbjct: 120 EHVVVYVNKADAV-----------------QDSEMVELVELEIRELLTEFGYKGEETPI 161
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 140 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 165
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 140 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 165
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 140 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 165
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 140 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 165
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 140 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 165
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 140 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 165
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 140 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 165
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +II L+K D
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KL 425
+
Sbjct: 140 MV 141
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +I+ ++K D
Sbjct: 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ ++ D +M +R+++ Q++ G
Sbjct: 140 MV-----------------DDPELLDLVEMEVRDLLNQYEFPG 165
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD PGH + G D AILVV DG PQT E + L ++ V +II L+K D
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 290 QAEENLRSPICCILGHVDAGKTRLLDCIRGTNV---QEGEAGGITQQIGATYFPVENIQK 346
QAE N+ ++GHVD GKT L + G E GI+ ++G Y E I+K
Sbjct: 6 QAEVNIG-----MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG--YADCE-IRK 57
Query: 347 RTEKLNADAKLKVPGLLV----------VDTPGHESFTNLRSWGPGLCDIAILVVDIMDG 396
+ K + P L VD+PGHE+ G L D AILV+ +
Sbjct: 58 CPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP 117
Query: 397 I-KPQTIESLDLLKERSVDFII 417
+PQT E L L+ +D II
Sbjct: 118 CPQPQTKEHLMALEILGIDKII 139
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKAD 423
++DTPGH FT D A+ V+D G++P+TI+ ++ + R ++K D
Sbjct: 86 LLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRHTPIXTFINKXD 145
Query: 424 K 424
+
Sbjct: 146 R 146
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 34/168 (20%)
Query: 301 CILGHVDAGKTRL-------LDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEK--- 350
+LGHVDAGK+ L L+ + + +++ + ++ +G + F I +T +
Sbjct: 171 VVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRE--SETMGKSSFKFAWIMDQTNEERE 228
Query: 351 -------LNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDI---------- 393
+ +VD PGH F G D+AIL VD
Sbjct: 229 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD 288
Query: 394 MDGIKPQTIESLDLLKERSV-DFIIALSKADKLYGWKSCKNAPIKKAL 440
+DG QT E + L + + IIA++K D + W + IK L
Sbjct: 289 LDG---QTKEHMLLASSLGIHNLIIAMNKMDNV-DWSQQRFEEIKSKL 332
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKAD 423
++DTPGH FT + D A+ V+D G++PQT V I+ ++K D
Sbjct: 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMD 138
Query: 424 KL 425
KL
Sbjct: 139 KL 140
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 34/168 (20%)
Query: 301 CILGHVDAGKTRL-------LDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEK--- 350
+LGHVDAGK+ L L+ + + +++ + ++ +G + F I +T +
Sbjct: 37 VVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRE--SETMGKSSFKFAWIMDQTNEERE 94
Query: 351 -------LNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDI---------- 393
+ +VD PGH F G D+AIL VD
Sbjct: 95 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD 154
Query: 394 MDGIKPQTIESLDLLKERSV-DFIIALSKADKLYGWKSCKNAPIKKAL 440
+DG QT E + L + + IIA++K D + W + IK L
Sbjct: 155 LDG---QTKEHMLLASSLGIHNLIIAMNKMDNV-DWSQQRFEEIKSKL 198
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKAD 423
++DTPGH FT + D A+ V+D G++PQT V I+ ++K D
Sbjct: 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMD 138
Query: 424 KL 425
KL
Sbjct: 139 KL 140
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 26/151 (17%)
Query: 294 NLRSPICCILGHVDAGKTRLLDCI--RGTNVQEGEAG--------------GITQQIGAT 337
N+R+ ++ HVD GK+ L D + R + +AG GIT + A
Sbjct: 18 NVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 338 YFPVE----NIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDI 393
E ++++ +K + ++ L + ++D+PGH F++ + + D A++VVD
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFL----INLIDSPGHVDFSSEVTAALRVTDGALVVVDT 131
Query: 394 MDGIKPQTIESLDLLKERSVDFIIALSKADK 424
++G+ QT L + ++ ++K D+
Sbjct: 132 IEGVCVQTETVLRQALGERIKPVVVINKVDR 162
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 26/151 (17%)
Query: 294 NLRSPICCILGHVDAGKTRLLDCI--RGTNVQEGEAG--------------GITQQIGA- 336
N+R+ ++ HVD GK+ L D + R + +AG GIT + A
Sbjct: 18 NVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75
Query: 337 ---TYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDI 393
+ E++++ +K + ++ L + ++D+PGH F++ + + D A++VVD
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFL----INLIDSPGHVDFSSEVTAALRVTDGALVVVDT 131
Query: 394 MDGIKPQTIESLDLLKERSVDFIIALSKADK 424
++G+ QT L + ++ ++K D+
Sbjct: 132 IEGVCVQTETVLRQALGERIKPVVVINKVDR 162
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 302 ILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPG 361
++GHVD GKT L+ I G + I T V K+ E + K G
Sbjct: 13 VVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPSCKSCG 72
Query: 362 ----------LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKE 410
+ +D PGHE G L D AILVV + +PQT E L
Sbjct: 73 SDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI 132
Query: 411 RSV-DFIIALSKAD 423
V + II +K D
Sbjct: 133 IGVKNLIIVQNKVD 146
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 301 CILGHVDAGKTRLLD--CIRGTNVQEG---EAGGITQQIGATYFPVENIQKRTEKLNADA 355
I+ H DAGKT + + + G +Q + G Q + + +E Q+ +
Sbjct: 17 AIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEK-QRGISITTSVM 75
Query: 356 KLKVPGLLV--VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSV 413
+ LV +DTPGHE F+ D ++V+D G++ +T + +++ + R
Sbjct: 76 QFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDT 135
Query: 414 DFIIALSKADK 424
+ ++K D+
Sbjct: 136 PILTFMNKLDR 146
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 301 CILGHVDAGKTRLLD--CIRGTNVQEG---EAGGITQQIGATYFPVENIQKRTEKLNADA 355
I+ H DAGKT + + + G +Q + G Q + + +E Q+ +
Sbjct: 17 AIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEK-QRGISITTSVM 75
Query: 356 KLKVPGLLV--VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSV 413
+ LV +DTPGHE F+ D ++V+D G++ +T + +++ + R
Sbjct: 76 QFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDT 135
Query: 414 DFIIALSKADK 424
+ ++K D+
Sbjct: 136 PILTFMNKLDR 146
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 87/243 (35%), Gaps = 93/243 (38%)
Query: 300 CCILGHVDAGKTRLLDCI-----------------------RGT--------NVQEGEAG 328
+ GHVD+GK+ +L I +G+ +E A
Sbjct: 180 LVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERAR 239
Query: 329 GITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAI 388
G+T + +T F +D K+ G D PGH F + G D A+
Sbjct: 240 GVTMDVASTTF------------ESDKKIYEIG----DAPGHRDFISGMIAGASSADFAV 283
Query: 389 LVVD----------IMDGIKPQTIESLDLLKERSV-DFIIALSKADKLYGWKSCKNAPIK 437
LVVD + +G QT E LL+ + + +++++K D L W
Sbjct: 284 LVVDSSQNNFERGFLENG---QTREHAYLLRALGISEIVVSVNKLD-LMSWS-------- 331
Query: 438 KALEQQSKDVEDEFKMRLRNIITQF--KEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTM 495
ED F+ ++NI++ F K G T VP SAI +
Sbjct: 332 ----------EDRFQ-EIKNIVSDFLIKMVGFKTS----------NVHFVPISAISGTNL 370
Query: 496 VKK 498
++K
Sbjct: 371 IQK 373
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 302 ILGHVDAGKTRLLDCIRG---TNVQEGEAGGITQQIGA--TYFPVENIQKRTEKLNADAK 356
++GHVD GKT L+ I G + E G+T ++G T V K+ E +
Sbjct: 13 VVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPS 72
Query: 357 LKVPG----------LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESL 405
K G + +D PGHE G L D AILVV + +PQT E
Sbjct: 73 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 132
Query: 406 DLLKERSV-DFIIALSKAD 423
L V + II +K D
Sbjct: 133 VALGIIGVKNLIIVQNKVD 151
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 302 ILGHVDAGKTRLLDCIRG---TNVQEGEAGGITQQIGA--TYFPVENIQKRTEKLNADAK 356
++GHVD GKT L+ I G + E G+T ++G T V K+ E +
Sbjct: 14 VVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPS 73
Query: 357 LKVPG----------LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESL 405
K G + +D PGHE G L D AILVV + +PQT E
Sbjct: 74 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 133
Query: 406 DLLKERSV-DFIIALSKAD 423
L V + II +K D
Sbjct: 134 VALGIIGVKNLIIVQNKVD 152
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 300 CCILGHVDAGKTRLLDCI---RG----TNVQEGE--AGGITQQIGATYFPVENIQKRTEK 350
++GHVD GK+ L+ + RG V+E E A + ++ F ++ +++ E+
Sbjct: 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 68
Query: 351 ---LNADA---KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------I 397
+N + K ++D PGH F G D AILVV G +
Sbjct: 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSV 128
Query: 398 KPQTIESLDLLKERSVD-FIIALSKAD 423
+ QT E + L K +D I+A++K D
Sbjct: 129 EGQTREHIILAKTMGLDQLIVAVNKMD 155
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 289 KQAEENLRSPICCILGHVDAGKTRLLDCIRG--TNVQEGEAG-GITQQIGATYFPVENIQ 345
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F I+
Sbjct: 8 RQAEVNI-----GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 59
Query: 346 KRTEKLNADAKLKVP----------GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD 395
+ + P + +D+PGHE+ G L D AILV+ +
Sbjct: 60 RCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANE 119
Query: 396 GI-KPQTIESLDLLK 409
+PQT E L L+
Sbjct: 120 PCPRPQTREHLMALQ 134
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKAD 423
++DTPGH T + D A+ V+D G++PQT V I+ ++K D
Sbjct: 79 IIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMD 138
Query: 424 KL 425
KL
Sbjct: 139 KL 140
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKAD 423
++DTPGH T + D A+ V+D G++PQT V I+ ++K D
Sbjct: 79 IIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMD 138
Query: 424 KL 425
KL
Sbjct: 139 KL 140
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIA-LSKAD 423
VD GH + G D AILVV DG QT E + L ++ V +I+ ++K D
Sbjct: 80 VDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVVFMNKVD 139
Query: 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQG 466
+ +++ D +M +R+++ Q++ +G
Sbjct: 140 MV-----------------DDRELLDLVEMEVRDLLNQYEFRG 165
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL-- 357
I H+DAGKT + I + + G + + F +E ++R + A
Sbjct: 15 IVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 358 -KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
K + ++DTPGH FT + D AI+V D G++PQ+
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 302 ILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPG 361
++GHVD GKT L+ I G + + G IG V K+ E + K G
Sbjct: 13 VVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIG-----VCESCKKPEAYVTEPSCKSCG 66
Query: 362 ----------LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKE 410
+ +D PGHE G L D AILVV + +PQT E L
Sbjct: 67 SDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI 126
Query: 411 RSV-DFIIALSKAD 423
V + II +K D
Sbjct: 127 IGVKNLIIVQNKVD 140
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 438 KALEQQSKDVED-EFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV 496
KA+ +Q VE F++ R ++ +GL+ Y + E + F + +KT+V
Sbjct: 482 KAVLKQHYRVEPIGFRLEQREVLAN--GEGLDMAQYPMDDEARQIFQDLAEEEFGYKTLV 539
Query: 497 KKLA------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVE 539
K+L ++ ++E + GY + V + G LH G VE
Sbjct: 540 KRLGAVGRQELSTQIVVRLMEAGLLTGYDAQGEKVFVQGRLHFGGVGVE 588
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 289 KQAEENLRSPICCILGHVDAGKTRLLDCIRG--TNVQEGEAG-GITQQIGATYFPVENIQ 345
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F I+
Sbjct: 7 RQAEVNI-----GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 346 K--RTEKLNADAKLKVPG--------LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD 395
+ + + G + +D PGHE+ G L D AILV+ +
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 396 GI-KPQTIESLDLLK 409
+PQT E L L+
Sbjct: 119 PCPRPQTREHLMALQ 133
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 289 KQAEENLRSPICCILGHVDAGKTRLLDCIRG--TNVQEGEAG-GITQQIGATYFPVENIQ 345
+QAE N+ ++GHVD GKT L + G T+ E GIT +IG F I+
Sbjct: 7 RQAEVNI-----GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 346 K--RTEKLNADAKLKVPG--------LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD 395
+ + + G + +D PGHE+ G L D AILV+ +
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 396 GI-KPQTIESLDLLK 409
+PQT E L L+
Sbjct: 119 PCPRPQTREHLMALQ 133
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 330 ITQQIGATYFPVENIQKRTEKLNA---DAKLKVPGLLVVDTPGH 370
+ +Q+G +FP + QK + +NA +AKLK +L+VDT G
Sbjct: 150 LAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGR 193
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 330 ITQQIGATYFPVENIQKRTEKLNA---DAKLKVPGLLVVDTPGH 370
+ +Q+G +FP + QK + +NA +AKLK +L+VDT G
Sbjct: 151 LAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGR 194
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 22/135 (16%)
Query: 289 KQAEENLRSPICCILGHVDAGKTRLLDCIRG--TNVQEGEAG-GITQQIGATYFPVENIQ 345
+QAE N+ +GHVD GKT L + G T+ E GIT +IG F I+
Sbjct: 7 RQAEVNIGX-----VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG---FADAEIR 58
Query: 346 K--RTEKLNADAKLKVPG--------LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD 395
+ + + G + +D PGHE+ G L D AILV+ +
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANE 118
Query: 396 GI-KPQTIESLDLLK 409
+PQT E L L+
Sbjct: 119 PCPRPQTREHLXALQ 133
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 302 ILGHVDAGKTRLLDCI---RGTNVQEGEAGGITQQIGATYFPVENIQKR---------TE 349
I H+DAGKT + I G N + GE AT +E Q+R T
Sbjct: 14 ISAHIDAGKTTTTERILFYTGVNHKIGE----VHDGAATMDWMEQEQERGITITSAATTA 69
Query: 350 KLNADAKLKVPGLL-VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLL 408
+ AK P + ++DTPGH FT + D A++V + G++PQ+
Sbjct: 70 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 129
Query: 409 KERSVDFIIALSKADKL 425
+ V I ++K D++
Sbjct: 130 NKYKVPRIAFVNKMDRM 146
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 302 ILGHVDAGKTRLLDCI---RGTNVQEGEAGGITQQIGATYFPVENIQKR---------TE 349
I H+DAGKT + I G N + GE AT +E Q+R T
Sbjct: 15 ISAHIDAGKTTTTERILFYTGVNHKIGE----VHDGAATMDWMEQEQERGITITSAATTA 70
Query: 350 KLNADAKLKVPGLL-VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLL 408
+ AK P + ++DTPGH FT + D A++V + G++PQ+
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 409 KERSVDFIIALSKADKL 425
+ V I ++K D++
Sbjct: 131 NKYKVPRIAFVNKMDRM 147
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL-- 357
I H+DAGKT + I + + G + + F +E ++R + A
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 358 -KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
K + ++DTPGH FT + D AI+V D G++PQ+
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL-- 357
I H+DAGKT + I + + G + + F +E ++R + A
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 358 -KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
K + ++DTPGH FT + D AI+V D G++PQ+
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL-- 357
I H+DAGKT + I + + G + + F +E ++R + A
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 358 -KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
K + ++DTPGH FT + D AI+V D G++PQ+
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL-- 357
I H+DAGKT + I + + G + + F +E ++R + A
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 358 -KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
K + ++DTPGH FT + D AI+V D G++PQ+
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 31/143 (21%)
Query: 302 ILGHVDAGKTRLLDCI---RGTN----------------VQEGEAG-GITQQIGATYFPV 341
I HVDAGKT + + G N VQE E G IT T++
Sbjct: 18 ICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG 77
Query: 342 ENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
Q ++N V+DTPGH FT + D A++V G++PQ+
Sbjct: 78 SRGQYDNYRVN-----------VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS 126
Query: 402 IESLDLLKERSVDFIIALSKADK 424
+ V I+ ++K D+
Sbjct: 127 ETVWRQANKYGVPRIVYVNKMDR 149
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
++DTPGH FT + D AI+V D G++PQ+
Sbjct: 48 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 85
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------IKPQTIESLDLLKERSVD 414
++D PGH F G D AILVV G + QT E L L + ++
Sbjct: 89 FTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIE 148
Query: 415 -FIIALSKAD 423
I+A++K D
Sbjct: 149 QIIVAVNKMD 158
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------IKPQTIESLDLLKERSVD 414
++D PGH F G D AILVV G + QT E L L + ++
Sbjct: 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIE 145
Query: 415 -FIIALSKAD 423
I+A++K D
Sbjct: 146 QIIVAVNKMD 155
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL-- 357
I H+DAGKT + I + + G + + F +E ++R + A
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 358 -KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
K + ++D PGH FT + D AI+V D G++PQ+
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL-- 357
I H+DAGKT + I + + G + + F +E ++R + A
Sbjct: 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDF-MEQERERGITITAAVTTCF 73
Query: 358 -KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
K + ++D PGH FT + D AI+V D G++PQ+
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT 401
++D PGH FT + D AI+V D G++PQ+
Sbjct: 81 IIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 323 QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPG 382
QE G T ++G YF TEK + ++D PGH+SF G
Sbjct: 74 QEERDKGKTVEVGRAYF-------ETEKKH---------FTILDAPGHKSFVPNMIGGAS 117
Query: 383 LCDIAILVVDIMDG 396
D+A+LV+ G
Sbjct: 118 QADLAVLVISARKG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,496,828
Number of Sequences: 62578
Number of extensions: 517862
Number of successful extensions: 1263
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 105
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)