Query 036359
Match_columns 657
No_of_seqs 582 out of 3685
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1144 Translation initiation 100.0 3E-104 7E-109 862.9 43.1 620 2-657 99-846 (1064)
2 COG0532 InfB Translation initi 100.0 1.8E-56 3.9E-61 485.3 24.8 305 294-656 2-329 (509)
3 TIGR00491 aIF-2 translation in 100.0 1.8E-54 3.9E-59 490.1 30.3 349 294-656 1-374 (590)
4 PRK04004 translation initiatio 100.0 2.1E-53 4.6E-58 483.2 30.3 350 293-656 2-376 (586)
5 PRK14845 translation initiatio 100.0 5.7E-53 1.2E-57 497.3 28.6 339 301-656 469-832 (1049)
6 KOG1145 Mitochondrial translat 100.0 1.5E-49 3.3E-54 426.0 26.0 303 294-656 150-494 (683)
7 TIGR00487 IF-2 translation ini 100.0 1.7E-45 3.7E-50 417.7 26.6 304 293-656 83-408 (587)
8 PRK05306 infB translation init 100.0 4.3E-45 9.3E-50 423.2 26.1 303 293-656 286-610 (787)
9 CHL00189 infB translation init 100.0 1.3E-42 2.8E-47 399.3 24.1 304 295-656 242-565 (742)
10 COG5256 TEF1 Translation elong 100.0 6.8E-37 1.5E-41 323.0 22.6 243 297-596 7-317 (428)
11 PLN00043 elongation factor 1-a 100.0 1.3E-33 2.9E-38 312.6 21.8 240 298-593 8-316 (447)
12 PTZ00141 elongation factor 1- 100.0 1.8E-33 3.9E-38 311.7 21.8 241 298-594 8-317 (446)
13 COG0050 TufB GTPases - transla 100.0 2.2E-33 4.9E-38 282.6 16.5 240 299-597 14-297 (394)
14 PRK10512 selenocysteinyl-tRNA- 100.0 6.4E-33 1.4E-37 317.3 22.4 237 298-594 1-259 (614)
15 TIGR00475 selB selenocysteine- 100.0 9.7E-33 2.1E-37 314.8 22.6 237 299-597 2-261 (581)
16 PRK12736 elongation factor Tu; 100.0 1.5E-32 3.2E-37 300.7 22.2 242 297-594 12-296 (394)
17 KOG0460 Mitochondrial translat 100.0 2.2E-33 4.8E-38 287.3 14.0 244 296-598 53-342 (449)
18 PLN03126 Elongation factor Tu; 100.0 1.9E-32 4.2E-37 304.7 21.9 242 297-594 81-375 (478)
19 PLN03127 Elongation factor Tu; 100.0 3.8E-32 8.2E-37 300.8 23.3 245 296-594 60-349 (447)
20 PRK12735 elongation factor Tu; 100.0 7.5E-32 1.6E-36 295.3 22.7 242 297-594 12-298 (396)
21 CHL00071 tufA elongation facto 100.0 1.1E-31 2.4E-36 295.1 23.0 242 297-594 12-306 (409)
22 TIGR00485 EF-Tu translation el 100.0 9E-32 1.9E-36 294.7 22.0 242 297-594 12-296 (394)
23 PRK00049 elongation factor Tu; 100.0 1.7E-31 3.8E-36 292.4 22.9 242 297-594 12-298 (396)
24 PRK12317 elongation factor 1-a 100.0 2.6E-31 5.6E-36 293.9 21.8 241 297-594 6-309 (425)
25 PTZ00327 eukaryotic translatio 100.0 4.6E-31 1E-35 291.9 21.2 265 295-593 32-349 (460)
26 COG5258 GTPBP1 GTPase [General 100.0 3.7E-31 8E-36 274.5 18.0 279 296-605 116-447 (527)
27 COG3276 SelB Selenocysteine-sp 100.0 6.8E-31 1.5E-35 279.5 18.8 230 299-592 2-253 (447)
28 TIGR00483 EF-1_alpha translati 100.0 1E-30 2.2E-35 289.3 21.0 240 298-594 8-311 (426)
29 TIGR01394 TypA_BipA GTP-bindin 100.0 2E-30 4.4E-35 295.4 20.8 244 295-595 1-288 (594)
30 TIGR02034 CysN sulfate adenyly 100.0 1.5E-29 3.3E-34 277.9 21.1 237 299-594 2-299 (406)
31 KOG0458 Elongation factor 1 al 100.0 4.3E-29 9.3E-34 272.1 20.7 246 296-599 176-493 (603)
32 COG1217 TypA Predicted membran 100.0 5.3E-29 1.1E-33 263.9 19.1 246 293-596 3-293 (603)
33 PRK05124 cysN sulfate adenylyl 100.0 1.4E-28 3E-33 274.7 22.0 240 297-594 27-327 (474)
34 COG2895 CysN GTPases - Sulfate 100.0 7.8E-29 1.7E-33 255.7 18.3 241 297-596 6-307 (431)
35 PRK10218 GTP-binding protein; 100.0 1.6E-28 3.5E-33 279.7 21.0 245 293-594 3-291 (607)
36 TIGR03680 eif2g_arch translati 100.0 1.5E-28 3.3E-33 270.0 20.1 262 297-594 4-312 (406)
37 KOG0462 Elongation factor-type 100.0 7.2E-29 1.6E-33 267.6 14.1 240 293-595 58-332 (650)
38 PRK04000 translation initiatio 100.0 9.1E-28 2E-32 264.0 20.3 261 297-594 9-317 (411)
39 PRK05506 bifunctional sulfate 100.0 9.5E-28 2.1E-32 277.5 20.6 238 298-594 25-323 (632)
40 TIGR01393 lepA GTP-binding pro 99.9 3E-27 6.6E-32 270.0 19.3 240 294-595 2-277 (595)
41 PRK05433 GTP-binding protein L 99.9 3.7E-27 8E-32 269.6 19.7 240 293-595 5-281 (600)
42 COG0481 LepA Membrane GTPase L 99.9 3.2E-27 7E-32 251.1 16.5 196 292-538 6-229 (603)
43 KOG0461 Selenocysteine-specifi 99.9 2.8E-26 6.2E-31 235.2 16.0 241 297-583 7-273 (522)
44 COG0480 FusA Translation elong 99.9 1E-25 2.3E-30 258.3 22.0 269 292-595 7-392 (697)
45 KOG0459 Polypeptide release fa 99.9 1.7E-25 3.6E-30 234.1 18.8 242 296-594 78-389 (501)
46 PRK07560 elongation factor EF- 99.9 8.7E-25 1.9E-29 256.4 19.9 261 292-594 17-374 (731)
47 PRK00007 elongation factor G; 99.9 2.2E-24 4.9E-29 251.5 21.8 266 292-593 7-392 (693)
48 PRK12739 elongation factor G; 99.9 2.6E-24 5.6E-29 251.1 22.3 265 293-593 6-389 (691)
49 TIGR00484 EF-G translation elo 99.9 4.5E-24 9.8E-29 249.1 24.2 266 292-593 7-390 (689)
50 COG5257 GCD11 Translation init 99.9 1.2E-24 2.6E-29 222.2 16.7 239 298-573 11-289 (415)
51 KOG0463 GTP-binding protein GP 99.9 5.6E-25 1.2E-29 227.5 13.7 269 295-592 131-453 (641)
52 PRK00741 prfC peptide chain re 99.9 4.3E-24 9.3E-29 240.8 22.0 279 293-593 8-378 (526)
53 PF00009 GTP_EFTU: Elongation 99.9 1.9E-25 4.1E-30 220.1 9.7 158 299-501 5-181 (188)
54 PRK13351 elongation factor G; 99.9 9.4E-24 2E-28 246.7 21.9 265 293-594 6-389 (687)
55 KOG0465 Mitochondrial elongati 99.9 5.8E-24 1.3E-28 231.9 17.9 302 293-654 37-457 (721)
56 TIGR00503 prfC peptide chain r 99.9 3.9E-23 8.4E-28 233.1 21.3 277 293-593 9-379 (527)
57 TIGR00490 aEF-2 translation el 99.9 2.6E-23 5.6E-28 243.5 18.8 264 293-593 17-372 (720)
58 cd01884 EF_Tu EF-Tu subfamily. 99.9 6.8E-24 1.5E-28 210.8 11.3 154 298-497 3-173 (195)
59 PLN00116 translation elongatio 99.9 7.9E-23 1.7E-27 242.7 17.4 150 292-443 16-185 (843)
60 KOG1143 Predicted translation 99.9 9.4E-23 2E-27 211.1 15.5 268 298-597 168-491 (591)
61 PRK12740 elongation factor G; 99.9 6.1E-22 1.3E-26 231.0 23.6 256 303-593 1-371 (668)
62 KOG0464 Elongation factor G [T 99.9 2.2E-23 4.7E-28 217.8 7.3 271 289-595 31-419 (753)
63 PTZ00416 elongation factor 2; 99.9 2E-21 4.3E-26 230.4 18.7 126 292-425 16-157 (836)
64 cd01883 EF1_alpha Eukaryotic e 99.9 2E-21 4.3E-26 196.5 11.7 154 300-497 2-195 (219)
65 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 6.8E-21 1.5E-25 182.1 12.2 160 298-501 1-160 (168)
66 cd04165 GTPBP1_like GTPBP1-lik 99.8 5.6E-21 1.2E-25 193.9 11.9 181 300-501 2-217 (224)
67 cd04171 SelB SelB subfamily. 99.8 1.1E-20 2.5E-25 179.4 13.2 155 299-501 2-160 (164)
68 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.3E-20 2.8E-25 189.0 11.1 153 300-499 2-186 (208)
69 cd01889 SelB_euk SelB subfamil 99.8 2.6E-20 5.6E-25 184.0 12.5 173 299-502 2-181 (192)
70 cd03703 aeIF5B_II aeIF5B_II: T 99.8 1.9E-20 4.2E-25 166.6 9.0 104 505-608 1-109 (110)
71 cd01888 eIF2_gamma eIF2-gamma 99.8 3.1E-20 6.7E-25 185.6 11.6 170 299-501 2-193 (203)
72 COG4108 PrfC Peptide chain rel 99.8 1.5E-19 3.2E-24 191.7 16.3 258 295-592 12-379 (528)
73 cd01885 EF2 EF2 (for archaea a 99.8 3E-20 6.5E-25 188.1 10.4 122 296-425 1-138 (222)
74 cd01891 TypA_BipA TypA (tyrosi 99.8 6.9E-20 1.5E-24 181.3 10.7 155 295-497 2-172 (194)
75 cd04168 TetM_like Tet(M)-like 99.8 1E-19 2.2E-24 186.2 10.2 121 300-443 2-140 (237)
76 cd01886 EF-G Elongation factor 99.8 2E-19 4.3E-24 187.5 10.9 110 300-425 2-129 (270)
77 cd01890 LepA LepA subfamily. 99.8 2.3E-19 5E-24 173.9 10.2 117 296-425 1-132 (179)
78 cd00881 GTP_translation_factor 99.8 9E-19 1.9E-23 170.3 10.7 164 300-501 2-181 (189)
79 cd04167 Snu114p Snu114p subfam 99.8 4E-18 8.7E-23 171.5 11.3 117 296-425 1-136 (213)
80 cd04169 RF3 RF3 subfamily. Pe 99.7 2.5E-18 5.4E-23 179.0 9.6 129 295-425 2-136 (267)
81 PF02421 FeoB_N: Ferrous iron 99.7 4.8E-18 1E-22 162.3 9.5 110 299-426 2-119 (156)
82 TIGR03598 GTPase_YsxC ribosome 99.7 1E-17 2.2E-22 163.6 11.9 149 294-495 15-178 (179)
83 COG1159 Era GTPase [General fu 99.7 2.1E-17 4.6E-22 169.8 12.1 117 294-426 3-128 (298)
84 KOG0466 Translation initiation 99.7 7.2E-18 1.6E-22 171.3 8.1 209 297-538 38-292 (466)
85 cd04170 EF-G_bact Elongation f 99.7 4.6E-17 1E-21 169.5 12.7 124 300-425 2-129 (268)
86 cd01894 EngA1 EngA1 subfamily. 99.7 3.9E-17 8.4E-22 153.7 10.4 109 301-425 1-118 (157)
87 cd01897 NOG NOG1 is a nucleola 99.7 7.6E-17 1.6E-21 154.5 11.8 148 298-501 1-162 (168)
88 KOG0469 Elongation factor 2 [T 99.7 3.3E-17 7.1E-22 175.2 10.1 132 292-425 16-163 (842)
89 KOG0468 U5 snRNP-specific prot 99.7 6.7E-16 1.4E-20 169.8 20.4 121 292-425 125-262 (971)
90 cd01895 EngA2 EngA2 subfamily. 99.7 9.7E-17 2.1E-21 153.0 12.1 114 297-426 2-127 (174)
91 TIGR03594 GTPase_EngA ribosome 99.7 7.1E-17 1.5E-21 178.9 12.3 156 296-501 171-338 (429)
92 cd04160 Arfrp1 Arfrp1 subfamil 99.7 6.2E-17 1.3E-21 154.9 9.7 153 300-501 2-163 (167)
93 COG1160 Predicted GTPases [Gen 99.7 1E-16 2.2E-21 173.1 11.5 145 298-500 4-158 (444)
94 cd04154 Arl2 Arl2 subfamily. 99.7 8.1E-17 1.8E-21 155.9 9.7 152 296-501 13-169 (173)
95 TIGR00436 era GTP-binding prot 99.7 2.1E-16 4.6E-21 164.8 13.1 110 299-425 2-120 (270)
96 cd01864 Rab19 Rab19 subfamily. 99.7 1.7E-16 3.7E-21 152.0 11.1 115 298-426 4-122 (165)
97 cd04124 RabL2 RabL2 subfamily. 99.7 2.7E-16 5.9E-21 150.6 12.4 113 299-425 2-117 (161)
98 PRK00093 GTP-binding protein D 99.7 1.6E-16 3.5E-21 176.4 12.5 155 296-501 172-338 (435)
99 PRK00089 era GTPase Era; Revie 99.7 2.8E-16 6.1E-21 165.5 13.2 116 294-425 2-126 (292)
100 cd01879 FeoB Ferrous iron tran 99.7 1.2E-16 2.6E-21 151.0 9.0 107 302-426 1-115 (158)
101 KOG0467 Translation elongation 99.7 2.7E-16 6E-21 175.7 12.6 116 292-425 6-137 (887)
102 cd04157 Arl6 Arl6 subfamily. 99.7 1.4E-16 3.1E-21 151.2 9.0 109 300-425 2-117 (162)
103 cd01862 Rab7 Rab7 subfamily. 99.7 4.4E-16 9.6E-21 149.4 12.2 113 299-425 2-122 (172)
104 PRK15494 era GTPase Era; Provi 99.7 2.5E-16 5.5E-21 169.4 11.6 115 295-425 50-173 (339)
105 cd04113 Rab4 Rab4 subfamily. 99.7 3.4E-16 7.3E-21 149.1 11.1 114 299-426 2-119 (161)
106 cd04151 Arl1 Arl1 subfamily. 99.7 3.7E-16 8E-21 148.8 10.7 148 300-501 2-154 (158)
107 cd04119 RJL RJL (RabJ-Like) su 99.7 6.7E-16 1.5E-20 146.9 12.3 113 299-425 2-123 (168)
108 cd01861 Rab6 Rab6 subfamily. 99.7 6.4E-16 1.4E-20 146.8 11.9 113 299-425 2-118 (161)
109 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1E-15 2.2E-20 152.3 13.9 111 299-425 2-123 (201)
110 cd04106 Rab23_lke Rab23-like s 99.7 5.5E-16 1.2E-20 147.4 11.4 116 299-426 2-120 (162)
111 smart00175 RAB Rab subfamily o 99.7 8.6E-16 1.9E-20 146.0 12.7 114 299-426 2-119 (164)
112 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 9.7E-16 2.1E-20 146.8 12.5 110 299-425 4-120 (166)
113 cd04120 Rab12 Rab12 subfamily. 99.6 1.1E-15 2.4E-20 152.9 13.3 113 299-425 2-118 (202)
114 cd04114 Rab30 Rab30 subfamily. 99.6 8.1E-16 1.8E-20 147.4 11.1 115 297-425 7-125 (169)
115 cd01898 Obg Obg subfamily. Th 99.6 7.4E-16 1.6E-20 147.7 10.7 112 300-426 3-128 (170)
116 cd01866 Rab2 Rab2 subfamily. 99.6 1E-15 2.2E-20 147.5 11.6 114 298-425 5-122 (168)
117 smart00173 RAS Ras subfamily o 99.6 1.2E-15 2.6E-20 145.5 11.9 110 299-426 2-119 (164)
118 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.4E-15 3.1E-20 144.6 12.4 114 298-426 3-121 (164)
119 TIGR00231 small_GTP small GTP- 99.6 5.8E-16 1.3E-20 144.0 9.4 114 298-426 2-122 (161)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.6 4.6E-16 1E-20 147.7 8.7 147 300-500 2-153 (158)
121 TIGR03594 GTPase_EngA ribosome 99.6 5E-16 1.1E-20 172.2 10.2 112 299-426 1-121 (429)
122 cd04122 Rab14 Rab14 subfamily. 99.6 1.7E-15 3.8E-20 145.3 12.7 111 299-426 4-121 (166)
123 PRK03003 GTP-binding protein D 99.6 7.5E-16 1.6E-20 172.9 11.7 114 296-425 210-335 (472)
124 cd01867 Rab8_Rab10_Rab13_like 99.6 1.5E-15 3.3E-20 146.0 12.3 115 298-426 4-122 (167)
125 PRK03003 GTP-binding protein D 99.6 6.4E-16 1.4E-20 173.5 11.0 112 298-425 39-159 (472)
126 PRK00093 GTP-binding protein D 99.6 9E-16 2E-20 170.5 11.4 112 298-425 2-122 (435)
127 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.9E-15 4.1E-20 143.0 11.7 112 299-425 3-119 (162)
128 cd01860 Rab5_related Rab5-rela 99.6 2.4E-15 5.2E-20 143.1 12.5 113 299-425 3-119 (163)
129 cd04116 Rab9 Rab9 subfamily. 99.6 2.4E-15 5.3E-20 144.6 12.6 114 298-425 6-127 (170)
130 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1.5E-15 3.2E-20 147.6 11.1 150 298-501 16-170 (174)
131 cd04159 Arl10_like Arl10-like 99.6 7.9E-16 1.7E-20 144.2 8.7 108 300-425 2-114 (159)
132 cd04136 Rap_like Rap-like subf 99.6 2.5E-15 5.3E-20 142.9 12.1 110 298-425 2-119 (163)
133 cd04156 ARLTS1 ARLTS1 subfamil 99.6 2E-15 4.3E-20 143.5 11.4 150 300-501 2-156 (160)
134 PRK04213 GTP-binding protein; 99.6 1.8E-15 3.9E-20 150.0 11.5 110 296-425 8-143 (201)
135 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.1E-15 2.4E-20 149.9 9.5 115 297-425 3-122 (183)
136 cd04149 Arf6 Arf6 subfamily. 99.6 1.7E-15 3.6E-20 146.6 10.7 151 297-501 9-164 (168)
137 cd04163 Era Era subfamily. Er 99.6 3.1E-15 6.8E-20 141.0 12.3 114 296-425 2-124 (168)
138 cd04115 Rab33B_Rab33A Rab33B/R 99.6 2.3E-15 5E-20 145.3 11.5 114 298-425 3-122 (170)
139 cd01863 Rab18 Rab18 subfamily. 99.6 2.4E-15 5.3E-20 143.0 11.2 113 299-425 2-119 (161)
140 PTZ00369 Ras-like protein; Pro 99.6 3.6E-15 7.7E-20 146.9 12.7 114 297-425 5-123 (189)
141 cd01865 Rab3 Rab3 subfamily. 99.6 3.3E-15 7.2E-20 143.4 12.0 114 299-426 3-120 (165)
142 cd04127 Rab27A Rab27a subfamil 99.6 3.8E-15 8.2E-20 144.6 12.4 121 298-425 5-133 (180)
143 cd00877 Ran Ran (Ras-related n 99.6 1.8E-15 3.9E-20 146.0 10.0 113 299-425 2-117 (166)
144 COG0218 Predicted GTPase [Gene 99.6 3.9E-15 8.4E-20 145.7 12.4 114 294-426 21-149 (200)
145 cd04142 RRP22 RRP22 subfamily. 99.6 3.9E-15 8.4E-20 148.4 12.6 110 299-425 2-129 (198)
146 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.5E-15 3.2E-20 146.4 9.2 109 300-426 2-113 (164)
147 cd01868 Rab11_like Rab11-like. 99.6 2.9E-15 6.4E-20 143.1 11.2 111 298-425 4-121 (165)
148 COG1160 Predicted GTPases [Gen 99.6 2.7E-15 5.8E-20 162.1 12.0 157 296-501 177-345 (444)
149 cd01878 HflX HflX subfamily. 99.6 1.8E-15 3.8E-20 150.6 9.9 114 297-426 41-167 (204)
150 cd04150 Arf1_5_like Arf1-Arf5- 99.6 2.3E-15 4.9E-20 144.2 9.8 149 299-501 2-155 (159)
151 cd04176 Rap2 Rap2 subgroup. T 99.6 4.7E-15 1E-19 141.5 11.9 109 299-425 3-119 (163)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.6 3.3E-15 7.2E-20 140.3 10.4 110 299-426 3-121 (157)
153 PLN00223 ADP-ribosylation fact 99.6 3E-15 6.6E-20 146.8 10.5 151 297-501 17-172 (181)
154 PRK00454 engB GTP-binding prot 99.6 4.4E-15 9.4E-20 146.2 11.5 112 296-426 23-149 (196)
155 cd04110 Rab35 Rab35 subfamily. 99.6 4.7E-15 1E-19 147.4 11.8 115 298-426 7-124 (199)
156 cd01874 Cdc42 Cdc42 subfamily. 99.6 5.3E-15 1.1E-19 144.2 11.8 112 299-425 3-118 (175)
157 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 4.7E-15 1E-19 144.1 11.4 113 298-425 3-120 (172)
158 smart00178 SAR Sar1p-like memb 99.6 3.5E-15 7.6E-20 146.5 10.6 159 296-501 16-179 (184)
159 cd01875 RhoG RhoG subfamily. 99.6 4.4E-15 9.6E-20 146.8 11.3 111 297-425 3-120 (191)
160 cd04126 Rab20 Rab20 subfamily. 99.6 7.7E-15 1.7E-19 148.6 13.2 106 299-426 2-114 (220)
161 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.9E-15 6.3E-20 144.7 9.6 108 300-426 2-114 (167)
162 cd00154 Rab Rab family. Rab G 99.6 3.9E-15 8.5E-20 139.3 10.1 113 299-425 2-118 (159)
163 cd04175 Rap1 Rap1 subgroup. T 99.6 5.4E-15 1.2E-19 141.3 11.1 112 299-425 3-119 (164)
164 cd04144 Ras2 Ras2 subfamily. 99.6 4.4E-15 9.5E-20 146.4 10.7 112 300-426 2-120 (190)
165 PLN03071 GTP-binding nuclear p 99.6 4.1E-15 8.9E-20 150.4 10.6 117 295-425 11-130 (219)
166 cd04155 Arl3 Arl3 subfamily. 99.6 2.5E-15 5.3E-20 144.8 8.4 153 295-501 12-169 (173)
167 cd04132 Rho4_like Rho4-like su 99.6 1.3E-14 2.9E-19 141.9 13.7 114 299-426 2-119 (187)
168 cd00879 Sar1 Sar1 subfamily. 99.6 2.7E-15 5.9E-20 147.2 8.8 112 295-425 17-133 (190)
169 cd04140 ARHI_like ARHI subfami 99.6 1.1E-14 2.4E-19 139.7 12.7 112 299-425 3-121 (165)
170 cd04135 Tc10 TC10 subfamily. 99.6 7.3E-15 1.6E-19 141.7 11.3 113 299-426 2-118 (174)
171 cd04134 Rho3 Rho3 subfamily. 99.6 6.3E-15 1.4E-19 145.3 10.9 112 299-425 2-117 (189)
172 PRK15467 ethanolamine utilizat 99.6 2.7E-15 5.8E-20 144.1 8.0 136 299-502 3-142 (158)
173 cd04158 ARD1 ARD1 subfamily. 99.6 3.5E-15 7.7E-20 144.1 8.9 107 300-425 2-113 (169)
174 smart00177 ARF ARF-like small 99.6 8.7E-15 1.9E-19 142.5 11.5 151 297-501 13-168 (175)
175 cd01893 Miro1 Miro1 subfamily. 99.6 1.1E-14 2.5E-19 139.9 12.2 112 299-426 2-117 (166)
176 cd00880 Era_like Era (E. coli 99.6 8.3E-15 1.8E-19 136.2 10.9 110 302-426 1-118 (163)
177 TIGR03156 GTP_HflX GTP-binding 99.6 4.3E-15 9.3E-20 160.4 10.2 112 298-425 190-314 (351)
178 PRK09518 bifunctional cytidyla 99.6 5.4E-15 1.2E-19 173.6 11.7 113 297-425 275-396 (712)
179 cd04121 Rab40 Rab40 subfamily. 99.6 1.3E-14 2.9E-19 143.5 12.7 111 298-425 7-123 (189)
180 cd04112 Rab26 Rab26 subfamily. 99.6 9E-15 2E-19 144.3 11.4 113 299-425 2-119 (191)
181 smart00174 RHO Rho (Ras homolo 99.6 1.3E-14 2.7E-19 140.0 12.1 109 300-426 1-116 (174)
182 PRK09518 bifunctional cytidyla 99.6 7.1E-15 1.5E-19 172.6 12.3 114 297-426 450-575 (712)
183 cd04123 Rab21 Rab21 subfamily. 99.6 1.1E-14 2.4E-19 137.8 11.3 113 299-425 2-118 (162)
184 cd04109 Rab28 Rab28 subfamily. 99.6 9.9E-15 2.1E-19 147.0 11.6 111 299-425 2-122 (215)
185 cd04139 RalA_RalB RalA/RalB su 99.6 1.7E-14 3.7E-19 136.8 12.4 109 299-425 2-118 (164)
186 cd00157 Rho Rho (Ras homology) 99.6 1.8E-14 3.8E-19 138.1 12.2 113 299-426 2-118 (171)
187 cd04101 RabL4 RabL4 (Rab-like4 99.6 1E-14 2.2E-19 139.1 10.3 115 299-426 2-121 (164)
188 PLN03110 Rab GTPase; Provision 99.6 1.6E-14 3.5E-19 145.7 12.0 114 298-425 13-130 (216)
189 cd04147 Ras_dva Ras-dva subfam 99.6 1.5E-14 3.1E-19 143.7 11.5 112 300-426 2-118 (198)
190 cd04118 Rab24 Rab24 subfamily. 99.6 2.9E-14 6.4E-19 140.3 13.6 110 299-425 2-118 (193)
191 PLN03118 Rab family protein; P 99.6 2.3E-14 4.9E-19 143.8 12.8 114 297-425 14-133 (211)
192 cd01871 Rac1_like Rac1-like su 99.6 2.4E-14 5.2E-19 139.4 12.5 113 298-425 2-118 (174)
193 cd01870 RhoA_like RhoA-like su 99.6 1.4E-14 3.1E-19 139.8 10.7 110 299-426 3-119 (175)
194 cd04143 Rhes_like Rhes_like su 99.6 1.9E-14 4.1E-19 148.4 11.9 109 299-425 2-126 (247)
195 KOG0084 GTPase Rab1/YPT1, smal 99.6 2E-14 4.4E-19 139.0 11.0 114 296-426 8-128 (205)
196 COG2229 Predicted GTPase [Gene 99.6 3.5E-14 7.6E-19 136.3 12.4 155 293-500 6-171 (187)
197 PRK09554 feoB ferrous iron tra 99.5 1.5E-14 3.3E-19 169.8 11.9 111 297-425 3-125 (772)
198 PTZ00133 ADP-ribosylation fact 99.5 3.1E-14 6.7E-19 139.7 12.0 147 298-501 18-172 (182)
199 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 2E-14 4.2E-19 139.4 10.4 111 299-426 2-120 (170)
200 cd04128 Spg1 Spg1p. Spg1p (se 99.5 2.9E-14 6.2E-19 140.1 11.6 105 299-425 2-117 (182)
201 cd01881 Obg_like The Obg-like 99.5 2.3E-14 4.9E-19 137.8 10.6 110 302-426 1-134 (176)
202 cd04133 Rop_like Rop subfamily 99.5 4.9E-14 1.1E-18 137.9 13.0 112 299-425 3-118 (176)
203 cd04137 RheB Rheb (Ras Homolog 99.5 2.2E-14 4.8E-19 139.3 10.4 112 299-425 3-119 (180)
204 cd04111 Rab39 Rab39 subfamily. 99.5 4.2E-14 9E-19 142.3 12.6 112 298-425 3-122 (211)
205 cd04117 Rab15 Rab15 subfamily. 99.5 4.7E-14 1E-18 135.2 12.4 110 299-425 2-118 (161)
206 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 5.6E-14 1.2E-18 138.2 13.2 110 298-425 6-122 (182)
207 cd04125 RabA_like RabA-like su 99.5 5.5E-14 1.2E-18 138.0 13.1 110 299-425 2-118 (188)
208 TIGR02528 EutP ethanolamine ut 99.5 1.5E-14 3.3E-19 135.0 8.7 95 299-425 2-101 (142)
209 PRK05291 trmE tRNA modificatio 99.5 1.4E-14 3.1E-19 161.4 9.8 112 297-426 215-335 (449)
210 smart00176 RAN Ran (Ras-relate 99.5 2.2E-14 4.8E-19 143.2 10.1 109 303-425 1-112 (200)
211 cd01876 YihA_EngB The YihA (En 99.5 7.7E-14 1.7E-18 132.0 13.2 108 300-426 2-124 (170)
212 cd00876 Ras Ras family. The R 99.5 2.4E-14 5.1E-19 135.2 9.5 112 300-426 2-118 (160)
213 cd04177 RSR1 RSR1 subgroup. R 99.5 5E-14 1.1E-18 135.6 11.9 109 299-425 3-119 (168)
214 cd01892 Miro2 Miro2 subfamily. 99.5 3.7E-14 8.1E-19 137.3 10.9 110 299-425 6-121 (169)
215 cd04146 RERG_RasL11_like RERG/ 99.5 3.5E-14 7.6E-19 136.0 10.5 111 300-425 2-119 (165)
216 TIGR02729 Obg_CgtA Obg family 99.5 3.2E-14 7E-19 152.4 11.2 113 299-426 159-287 (329)
217 KOG0394 Ras-related GTPase [Ge 99.5 2.3E-14 5E-19 136.9 8.8 153 298-499 10-170 (210)
218 PRK12299 obgE GTPase CgtA; Rev 99.5 3.3E-14 7.2E-19 152.5 11.1 112 300-426 161-285 (335)
219 cd04131 Rnd Rnd subfamily. Th 99.5 7.9E-14 1.7E-18 136.5 12.9 112 299-425 3-118 (178)
220 PF10662 PduV-EutP: Ethanolami 99.5 1.4E-14 3.1E-19 135.8 7.2 135 299-502 3-141 (143)
221 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 3.9E-14 8.5E-19 143.6 10.8 106 299-425 3-118 (222)
222 KOG0092 GTPase Rab5/YPT51 and 99.5 5.6E-14 1.2E-18 135.5 11.1 154 295-500 3-160 (200)
223 PRK11058 GTPase HflX; Provisio 99.5 3.7E-14 8.1E-19 156.7 11.1 113 298-426 198-323 (426)
224 PRK12298 obgE GTPase CgtA; Rev 99.5 5.1E-14 1.1E-18 153.9 11.8 112 299-425 161-288 (390)
225 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.3E-13 2.8E-18 133.5 12.8 112 299-425 2-117 (173)
226 PLN03108 Rab family protein; P 99.5 1E-13 2.2E-18 139.2 12.5 114 298-425 7-124 (210)
227 PF00025 Arf: ADP-ribosylation 99.5 4.1E-14 8.8E-19 138.1 9.0 153 296-501 13-170 (175)
228 cd04105 SR_beta Signal recogni 99.5 7.8E-14 1.7E-18 139.5 11.2 114 298-426 1-123 (203)
229 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 1.8E-13 4E-18 139.6 13.4 111 297-425 13-130 (232)
230 KOG0098 GTPase Rab2, small G p 99.5 1.9E-14 4.2E-19 137.7 5.5 147 299-500 8-161 (216)
231 PRK12296 obgE GTPase CgtA; Rev 99.5 1E-13 2.2E-18 154.6 12.1 111 299-425 161-297 (500)
232 KOG0078 GTP-binding protein SE 99.5 1.4E-13 2.9E-18 135.1 11.3 113 296-425 11-130 (207)
233 PRK12297 obgE GTPase CgtA; Rev 99.5 1.3E-13 2.7E-18 151.8 11.3 112 299-425 160-287 (424)
234 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 1.8E-13 3.9E-18 132.1 10.9 118 295-426 20-142 (221)
235 PF01926 MMR_HSR1: 50S ribosom 99.5 8.7E-14 1.9E-18 126.1 8.3 106 299-421 1-116 (116)
236 cd04148 RGK RGK subfamily. Th 99.5 4.3E-13 9.3E-18 135.9 12.9 112 299-426 2-120 (221)
237 cd00882 Ras_like_GTPase Ras-li 99.5 1E-13 2.2E-18 126.9 7.5 111 302-426 1-116 (157)
238 PF00071 Ras: Ras family; Int 99.5 3.9E-13 8.5E-18 127.9 11.7 110 300-426 2-118 (162)
239 KOG1423 Ras-like GTPase ERA [C 99.5 9.2E-13 2E-17 135.1 14.3 119 292-426 67-199 (379)
240 KOG1532 GTPase XAB1, interacts 99.4 1.3E-13 2.9E-18 139.1 7.4 183 295-499 17-256 (366)
241 TIGR00437 feoB ferrous iron tr 99.4 1.7E-13 3.7E-18 157.4 9.0 104 304-425 1-112 (591)
242 TIGR00450 mnmE_trmE_thdF tRNA 99.4 4E-13 8.6E-18 149.3 10.1 112 297-425 203-323 (442)
243 cd01882 BMS1 Bms1. Bms1 is an 99.4 9.7E-13 2.1E-17 133.8 12.0 109 295-425 37-146 (225)
244 KOG0086 GTPase Rab4, small G p 99.4 3.3E-13 7.1E-18 125.0 7.7 149 299-499 11-163 (214)
245 KOG0080 GTPase Rab18, small G 99.4 1.7E-13 3.6E-18 128.1 5.7 116 296-425 10-130 (209)
246 PTZ00132 GTP-binding nuclear p 99.4 7.8E-13 1.7E-17 132.9 10.9 116 296-425 8-126 (215)
247 cd04129 Rho2 Rho2 subfamily. 99.4 1.9E-12 4.1E-17 127.3 12.2 112 299-425 3-118 (187)
248 KOG0087 GTPase Rab11/YPT3, sma 99.4 8.9E-13 1.9E-17 128.9 9.0 109 300-425 17-132 (222)
249 cd04102 RabL3 RabL3 (Rab-like3 99.4 9.9E-13 2.1E-17 131.6 9.2 119 299-426 2-143 (202)
250 COG0370 FeoB Fe2+ transport sy 99.4 1.2E-12 2.6E-17 147.6 10.8 110 298-425 4-121 (653)
251 COG1084 Predicted GTPase [Gene 99.4 1.3E-12 2.8E-17 135.9 10.2 114 297-426 168-294 (346)
252 KOG0073 GTP-binding ADP-ribosy 99.4 1.3E-12 2.9E-17 122.7 8.2 111 296-425 15-130 (185)
253 cd01850 CDC_Septin CDC/Septin. 99.4 1.9E-11 4.1E-16 128.1 16.8 116 298-426 5-157 (276)
254 PRK09866 hypothetical protein; 99.3 6.3E-12 1.4E-16 141.2 13.6 67 360-426 230-303 (741)
255 COG0486 ThdF Predicted GTPase 99.3 1.9E-12 4.2E-17 140.5 9.2 112 298-426 218-338 (454)
256 PF08477 Miro: Miro-like prote 99.3 9.3E-13 2E-17 119.2 5.8 106 299-423 1-119 (119)
257 cd01896 DRG The developmentall 99.3 5.2E-12 1.1E-16 129.1 12.0 81 299-395 2-89 (233)
258 PLN00023 GTP-binding protein; 99.3 2.6E-12 5.7E-17 135.7 9.4 128 295-426 19-165 (334)
259 cd04103 Centaurin_gamma Centau 99.3 6.8E-12 1.5E-16 120.4 11.0 104 299-425 2-112 (158)
260 cd04104 p47_IIGP_like p47 (47- 99.3 1E-11 2.2E-16 123.6 12.2 114 298-425 2-120 (197)
261 cd01873 RhoBTB RhoBTB subfamil 99.3 1.4E-11 3E-16 122.6 13.1 121 299-425 4-133 (195)
262 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 2.9E-11 6.2E-16 120.1 13.0 111 299-426 2-130 (196)
263 PF09439 SRPRB: Signal recogni 99.3 5.1E-12 1.1E-16 123.6 7.3 112 297-426 3-126 (181)
264 KOG0079 GTP-binding protein H- 99.3 3.8E-12 8.2E-17 117.6 4.7 109 300-426 11-126 (198)
265 COG2262 HflX GTPases [General 99.2 2.3E-11 5E-16 130.1 9.8 115 296-426 191-318 (411)
266 KOG0070 GTP-binding ADP-ribosy 99.2 2.8E-11 6E-16 116.6 8.7 147 299-501 19-172 (181)
267 COG1100 GTPase SAR1 and relate 99.2 2.1E-11 4.6E-16 122.2 8.3 115 298-426 6-125 (219)
268 cd03702 IF2_mtIF2_II This fami 99.2 6.1E-11 1.3E-15 104.1 8.9 89 506-607 2-93 (95)
269 KOG0093 GTPase Rab3, small G p 99.2 5.7E-11 1.2E-15 109.8 9.0 114 299-426 23-140 (193)
270 KOG0075 GTP-binding ADP-ribosy 99.2 6.2E-11 1.3E-15 109.6 9.0 148 300-500 23-175 (186)
271 COG3596 Predicted GTPase [Gene 99.2 7.2E-11 1.6E-15 120.4 9.5 124 295-433 37-172 (296)
272 KOG1489 Predicted GTP-binding 99.2 8.3E-11 1.8E-15 121.6 10.0 109 300-425 199-325 (366)
273 KOG0095 GTPase Rab30, small G 99.2 1.1E-10 2.3E-15 108.0 9.6 114 299-426 9-126 (213)
274 COG5192 BMS1 GTP-binding prote 99.2 3.4E-11 7.4E-16 130.9 6.2 141 282-456 53-198 (1077)
275 KOG0052 Translation elongation 99.1 5.7E-11 1.2E-15 126.4 7.3 67 360-426 82-156 (391)
276 PF03029 ATP_bind_1: Conserved 99.1 8.1E-12 1.8E-16 128.0 0.7 66 361-426 92-170 (238)
277 PRK13768 GTPase; Provisional 99.1 7.2E-11 1.6E-15 122.2 7.1 67 360-426 97-176 (253)
278 smart00053 DYNc Dynamin, GTPas 99.1 2.5E-10 5.4E-15 116.9 10.5 132 295-426 24-206 (240)
279 KOG0091 GTPase Rab39, small G 99.1 1.8E-10 3.9E-15 108.3 8.5 113 298-426 9-130 (213)
280 KOG0097 GTPase Rab14, small G 99.1 2.6E-10 5.7E-15 104.5 9.0 145 300-499 14-165 (215)
281 KOG0395 Ras-related GTPase [Ge 99.1 1.8E-10 3.8E-15 114.8 7.7 115 297-426 3-122 (196)
282 cd03701 IF2_IF5B_II IF2_IF5B_I 99.1 7E-10 1.5E-14 97.6 8.9 88 506-606 2-92 (95)
283 KOG0076 GTP-binding ADP-ribosy 99.0 1.4E-10 3E-15 110.3 4.6 153 300-500 20-180 (197)
284 PF00350 Dynamin_N: Dynamin fa 99.0 5.1E-10 1.1E-14 107.6 7.8 64 359-422 100-168 (168)
285 cd01899 Ygr210 Ygr210 subfamil 99.0 1.3E-09 2.8E-14 116.3 11.3 95 300-395 1-111 (318)
286 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 3.1E-09 6.6E-14 108.3 13.4 149 299-491 1-161 (232)
287 KOG1191 Mitochondrial GTPase [ 99.0 1.1E-09 2.5E-14 118.9 9.6 115 296-426 267-403 (531)
288 KOG1490 GTP-binding protein CR 99.0 4.7E-10 1E-14 121.7 6.6 151 293-496 166-330 (620)
289 COG1163 DRG Predicted GTPase [ 99.0 3.3E-09 7.1E-14 110.4 11.6 83 299-397 65-154 (365)
290 KOG0090 Signal recognition par 99.0 3.4E-09 7.4E-14 104.3 10.7 111 297-426 38-159 (238)
291 KOG0088 GTPase Rab21, small G 99.0 4E-10 8.6E-15 105.4 3.8 117 296-426 12-132 (218)
292 KOG0081 GTPase Rab27, small G 99.0 5.9E-10 1.3E-14 104.3 4.9 122 300-426 12-138 (219)
293 PF05049 IIGP: Interferon-indu 99.0 3.2E-09 6.9E-14 114.6 11.2 156 298-491 36-200 (376)
294 cd01853 Toc34_like Toc34-like 99.0 6.1E-09 1.3E-13 107.5 12.9 115 296-426 30-163 (249)
295 KOG0410 Predicted GTP binding 98.9 1.5E-09 3.1E-14 112.6 7.4 176 294-538 175-370 (410)
296 KOG2486 Predicted GTPase [Gene 98.9 9.8E-10 2.1E-14 112.0 5.9 114 294-426 133-262 (320)
297 KOG0074 GTP-binding ADP-ribosy 98.9 1.4E-09 3.1E-14 100.0 6.4 113 296-426 16-133 (185)
298 KOG0393 Ras-related small GTPa 98.9 3.3E-09 7.1E-14 104.6 9.4 112 297-425 4-122 (198)
299 KOG0072 GTP-binding ADP-ribosy 98.9 2.8E-09 6E-14 98.5 7.4 152 296-501 17-173 (182)
300 COG0536 Obg Predicted GTPase [ 98.9 5.1E-09 1.1E-13 109.7 10.3 109 300-425 162-288 (369)
301 COG4917 EutP Ethanolamine util 98.9 1.5E-09 3.2E-14 98.2 5.2 135 299-502 3-141 (148)
302 PRK09435 membrane ATPase/prote 98.9 2.9E-09 6.3E-14 113.9 8.4 109 358-502 147-255 (332)
303 KOG0071 GTP-binding ADP-ribosy 98.9 5.7E-09 1.2E-13 96.0 8.6 146 300-501 20-172 (180)
304 PRK09602 translation-associate 98.9 1.1E-08 2.5E-13 112.2 12.1 97 298-394 2-113 (396)
305 PTZ00099 rab6; Provisional 98.8 1.2E-08 2.5E-13 100.0 9.9 65 361-425 30-98 (176)
306 PF00735 Septin: Septin; Inte 98.8 2.1E-08 4.6E-13 105.3 11.9 137 298-468 5-177 (281)
307 TIGR00991 3a0901s02IAP34 GTP-b 98.8 4.5E-08 9.7E-13 103.3 12.6 115 295-425 36-166 (313)
308 KOG0083 GTPase Rab26/Rab37, sm 98.8 4.7E-09 1E-13 95.6 4.3 111 302-425 2-116 (192)
309 PF04548 AIG1: AIG1 family; I 98.8 5.6E-08 1.2E-12 98.0 11.9 111 299-426 2-130 (212)
310 TIGR02836 spore_IV_A stage IV 98.8 1.8E-08 4E-13 108.6 8.7 121 298-424 18-192 (492)
311 cd03693 EF1_alpha_II EF1_alpha 98.8 4.9E-08 1.1E-12 85.3 9.7 79 503-593 3-87 (91)
312 KOG1707 Predicted Ras related/ 98.7 2.1E-08 4.5E-13 111.1 8.7 114 295-427 7-130 (625)
313 cd03694 GTPBP_II Domain II of 98.7 4.8E-08 1E-12 84.6 9.1 80 505-592 1-86 (87)
314 TIGR00073 hypB hydrogenase acc 98.7 2.3E-08 4.9E-13 100.4 8.0 100 359-501 102-201 (207)
315 TIGR00750 lao LAO/AO transport 98.7 2.7E-08 5.8E-13 105.7 8.5 62 358-426 125-186 (300)
316 cd03698 eRF3_II_like eRF3_II_l 98.7 1.2E-07 2.7E-12 81.2 9.4 76 504-592 1-82 (83)
317 KOG0077 Vesicle coat complex C 98.6 2.6E-08 5.6E-13 94.3 5.0 110 298-426 21-135 (193)
318 COG5019 CDC3 Septin family pro 98.6 4.4E-07 9.5E-12 96.4 13.3 118 296-426 22-176 (373)
319 cd03697 EFTU_II EFTU_II: Elong 98.6 1.7E-07 3.8E-12 81.0 8.1 78 505-592 1-84 (87)
320 PTZ00258 GTP-binding protein; 98.6 7.5E-08 1.6E-12 105.0 6.5 100 295-394 19-126 (390)
321 KOG4252 GTP-binding protein [S 98.6 2.6E-08 5.6E-13 95.2 2.2 117 296-426 19-138 (246)
322 cd03696 selB_II selB_II: this 98.5 3.5E-07 7.7E-12 78.3 8.8 76 505-592 1-82 (83)
323 KOG3883 Ras family small GTPas 98.5 2.8E-07 6.1E-12 86.2 8.7 114 296-425 8-131 (198)
324 KOG1954 Endocytosis/signaling 98.5 3.6E-07 7.8E-12 96.3 10.2 131 295-426 56-225 (532)
325 TIGR00101 ureG urease accessor 98.5 2E-07 4.3E-12 93.2 8.0 99 359-502 91-191 (199)
326 cd04089 eRF3_II eRF3_II: domai 98.5 6.6E-07 1.4E-11 76.5 9.5 75 504-592 1-81 (82)
327 PF03308 ArgK: ArgK protein; 98.5 8.4E-08 1.8E-12 98.1 4.0 103 359-500 121-223 (266)
328 cd01900 YchF YchF subfamily. 98.5 9.6E-08 2.1E-12 99.8 4.0 96 300-395 1-104 (274)
329 cd03695 CysN_NodQ_II CysN_NodQ 98.5 1.1E-06 2.3E-11 75.1 9.5 76 505-592 1-80 (81)
330 PRK09601 GTP-binding protein Y 98.5 2.3E-07 5E-12 100.2 6.7 97 298-394 3-107 (364)
331 KOG2655 Septin family protein 98.5 1.5E-06 3.2E-11 93.1 12.7 117 297-426 21-172 (366)
332 KOG1424 Predicted GTP-binding 98.4 5.6E-08 1.2E-12 106.4 1.7 55 298-371 315-370 (562)
333 PRK10463 hydrogenase nickel in 98.4 2.9E-07 6.4E-12 96.4 6.5 101 360-503 185-285 (290)
334 KOG0096 GTPase Ran/TC4/GSP1 (n 98.4 5.9E-07 1.3E-11 87.0 6.8 114 298-425 11-127 (216)
335 COG1703 ArgK Putative periplas 98.4 9.3E-07 2E-11 91.7 7.9 169 295-501 49-248 (323)
336 TIGR00993 3a0901s04IAP86 chlor 98.3 2.5E-06 5.5E-11 97.1 11.7 112 298-426 119-250 (763)
337 cd01858 NGP_1 NGP-1. Autoanti 98.3 5.5E-07 1.2E-11 86.2 5.3 55 297-370 102-157 (157)
338 cd04178 Nucleostemin_like Nucl 98.3 6.9E-07 1.5E-11 87.3 5.5 55 297-370 117-172 (172)
339 KOG1547 Septin CDC10 and relat 98.3 3.6E-06 7.9E-11 84.4 10.5 118 298-426 47-198 (336)
340 PF03193 DUF258: Protein of un 98.2 8.7E-07 1.9E-11 85.3 2.5 27 295-321 33-59 (161)
341 cd01849 YlqF_related_GTPase Yl 98.2 2.3E-06 5.1E-11 81.7 5.3 56 296-370 99-155 (155)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 2.3E-06 4.9E-11 80.5 4.9 54 299-371 85-139 (141)
343 cd03112 CobW_like The function 98.1 4.5E-06 9.8E-11 80.3 6.8 23 298-320 1-23 (158)
344 COG0012 Predicted GTPase, prob 98.1 1.2E-05 2.6E-10 86.2 10.1 98 298-395 3-109 (372)
345 cd01855 YqeH YqeH. YqeH is an 98.1 3E-06 6.6E-11 83.6 4.4 54 298-370 128-190 (190)
346 KOG3905 Dynein light intermedi 98.0 4.6E-05 1E-09 79.5 12.3 86 298-396 53-140 (473)
347 KOG3886 GTP-binding protein [S 98.0 6.7E-06 1.5E-10 82.2 5.9 113 299-426 6-130 (295)
348 KOG1534 Putative transcription 98.0 5.2E-06 1.1E-10 81.9 5.0 66 361-426 99-178 (273)
349 PRK09563 rbgA GTPase YlqF; Rev 98.0 5.5E-06 1.2E-10 87.5 5.5 57 296-371 120-177 (287)
350 COG0378 HypB Ni2+-binding GTPa 98.0 9.5E-06 2.1E-10 79.7 6.7 99 361-503 98-197 (202)
351 PRK14722 flhF flagellar biosyn 98.0 7.9E-06 1.7E-10 88.9 6.4 130 296-426 136-295 (374)
352 cd00066 G-alpha G protein alph 98.0 1.2E-05 2.6E-10 86.1 7.7 68 359-426 160-242 (317)
353 cd01851 GBP Guanylate-binding 98.0 8.5E-06 1.8E-10 83.0 6.0 85 298-395 8-103 (224)
354 TIGR01425 SRP54_euk signal rec 98.0 8.8E-06 1.9E-10 89.9 6.2 66 359-426 182-253 (429)
355 TIGR03596 GTPase_YlqF ribosome 98.0 7.8E-06 1.7E-10 85.8 5.4 56 296-370 117-173 (276)
356 cd01859 MJ1464 MJ1464. This f 98.0 1.6E-05 3.4E-10 75.8 6.6 51 375-425 4-54 (156)
357 cd01856 YlqF YlqF. Proteins o 97.9 1.2E-05 2.5E-10 78.2 5.6 56 296-370 114-170 (171)
358 COG1161 Predicted GTPases [Gen 97.9 8.7E-06 1.9E-10 87.4 4.9 56 297-371 132-188 (322)
359 COG1162 Predicted GTPases [Gen 97.9 1E-05 2.2E-10 84.8 4.9 28 294-321 161-188 (301)
360 TIGR00157 ribosome small subun 97.9 1.1E-05 2.3E-10 83.3 4.7 55 371-425 24-80 (245)
361 PRK12288 GTPase RsgA; Reviewed 97.9 1.1E-05 2.4E-10 87.4 4.8 26 296-321 204-229 (347)
362 PRK12289 GTPase RsgA; Reviewed 97.9 1.1E-05 2.4E-10 87.4 4.9 26 296-321 171-196 (352)
363 TIGR00092 GTP-binding protein 97.9 1.8E-05 3.8E-10 85.8 6.2 98 298-395 3-109 (368)
364 KOG4423 GTP-binding protein-li 97.9 2.7E-06 5.8E-11 82.2 -0.2 113 300-425 28-148 (229)
365 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.8E-05 6E-10 73.1 6.5 50 377-426 5-56 (141)
366 TIGR03597 GTPase_YqeH ribosome 97.9 7E-06 1.5E-10 89.5 2.8 109 299-426 156-280 (360)
367 PF03144 GTP_EFTU_D2: Elongati 97.9 4.1E-05 8.8E-10 63.7 6.7 67 519-592 1-74 (74)
368 TIGR03348 VI_IcmF type VI secr 97.8 2.2E-05 4.7E-10 97.6 6.7 117 295-427 109-258 (1169)
369 KOG0448 Mitofusin 1 GTPase, in 97.8 7.2E-05 1.6E-09 84.9 10.0 131 295-426 107-275 (749)
370 PRK14974 cell division protein 97.8 2.7E-05 5.9E-10 83.8 6.5 65 359-426 222-293 (336)
371 cd03114 ArgK-like The function 97.8 2.7E-05 5.8E-10 74.2 5.6 58 359-423 91-148 (148)
372 PF00448 SRP54: SRP54-type pro 97.8 2.7E-05 5.9E-10 77.7 5.2 66 359-426 83-154 (196)
373 PF05783 DLIC: Dynein light in 97.8 0.00026 5.6E-09 79.5 13.4 23 298-320 26-48 (472)
374 cd01858 NGP_1 NGP-1. Autoanti 97.8 5.5E-05 1.2E-09 72.3 7.0 48 379-426 4-53 (157)
375 TIGR00157 ribosome small subun 97.8 2.7E-05 5.9E-10 80.4 4.9 27 295-321 118-144 (245)
376 TIGR00064 ftsY signal recognit 97.8 3.8E-05 8.2E-10 80.5 6.0 66 358-426 153-231 (272)
377 PRK00771 signal recognition pa 97.8 3.8E-05 8.3E-10 85.4 6.3 61 360-425 176-245 (437)
378 KOG1144 Translation initiation 97.7 0.00014 3E-09 82.8 10.6 49 518-575 950-999 (1064)
379 PRK10416 signal recognition pa 97.7 4.7E-05 1E-09 81.6 6.5 67 358-426 195-273 (318)
380 cd03690 Tet_II Tet_II: This su 97.7 0.00011 2.3E-09 63.4 7.5 77 503-591 2-83 (85)
381 cd03115 SRP The signal recogni 97.7 6.5E-05 1.4E-09 72.9 6.9 65 359-426 82-153 (173)
382 cd03692 mtIF2_IVc mtIF2_IVc: t 97.7 0.00025 5.4E-09 61.0 9.6 77 507-592 3-83 (84)
383 PRK12289 GTPase RsgA; Reviewed 97.7 4E-05 8.7E-10 83.1 5.6 47 380-426 86-134 (352)
384 cd04092 mtEFG2_II_like mtEFG2_ 97.7 0.00021 4.5E-09 61.1 8.9 77 505-592 1-82 (83)
385 PRK11889 flhF flagellar biosyn 97.7 5.1E-05 1.1E-09 82.6 6.2 65 360-426 321-391 (436)
386 cd01859 MJ1464 MJ1464. This f 97.7 5.8E-05 1.3E-09 71.9 5.4 55 297-370 101-156 (156)
387 KOG1491 Predicted GTP-binding 97.7 6.3E-05 1.4E-09 79.3 5.8 100 296-395 19-126 (391)
388 PRK12727 flagellar biosynthesi 97.6 6.4E-05 1.4E-09 84.7 6.0 65 358-425 427-497 (559)
389 PRK12724 flagellar biosynthesi 97.6 8.2E-05 1.8E-09 81.8 6.7 125 296-426 222-373 (432)
390 cd01849 YlqF_related_GTPase Yl 97.6 0.00013 2.8E-09 69.7 7.2 42 385-426 1-43 (155)
391 cd01854 YjeQ_engC YjeQ/EngC. 97.6 5.3E-05 1.2E-09 80.0 4.9 28 295-322 159-186 (287)
392 cd01856 YlqF YlqF. Proteins o 97.6 7.8E-05 1.7E-09 72.4 5.6 57 367-425 2-59 (171)
393 PF02492 cobW: CobW/HypB/UreG, 97.6 3.2E-05 6.9E-10 75.8 2.7 127 298-426 1-155 (178)
394 PRK12726 flagellar biosynthesi 97.6 0.00011 2.3E-09 79.8 6.9 24 296-319 205-228 (407)
395 cd01855 YqeH YqeH. YqeH is an 97.6 0.00012 2.6E-09 72.2 6.0 57 368-426 19-75 (190)
396 cd04088 EFG_mtEFG_II EFG_mtEFG 97.6 0.00049 1.1E-08 58.7 9.0 77 505-592 1-82 (83)
397 KOG1673 Ras GTPases [General f 97.5 0.0001 2.2E-09 69.4 4.8 118 294-425 17-137 (205)
398 cd03691 BipA_TypA_II BipA_TypA 97.5 0.0004 8.7E-09 59.6 8.0 78 505-592 1-85 (86)
399 PRK00098 GTPase RsgA; Reviewed 97.5 8.9E-05 1.9E-09 78.8 4.7 27 295-321 162-188 (298)
400 cd01342 Translation_Factor_II_ 97.5 0.00073 1.6E-08 55.6 9.3 78 505-592 1-82 (83)
401 COG0523 Putative GTPases (G3E 97.5 0.00062 1.4E-08 73.0 11.0 125 298-426 2-159 (323)
402 PRK10867 signal recognition pa 97.5 0.00013 2.9E-09 81.0 5.8 64 359-425 183-253 (433)
403 cd03689 RF3_II RF3_II: this su 97.5 0.00032 6.9E-09 60.5 6.9 75 508-592 2-83 (85)
404 TIGR03596 GTPase_YlqF ribosome 97.5 0.00016 3.4E-09 76.0 6.0 56 368-425 5-61 (276)
405 PRK13796 GTPase YqeH; Provisio 97.5 9.3E-05 2E-09 80.9 4.2 54 299-371 162-221 (365)
406 KOG1533 Predicted GTPase [Gene 97.5 0.00017 3.7E-09 72.5 5.7 68 359-426 96-177 (290)
407 KOG3887 Predicted small GTPase 97.5 0.00047 1E-08 69.6 8.6 109 297-426 27-149 (347)
408 PRK00098 GTPase RsgA; Reviewed 97.5 0.00065 1.4E-08 72.2 10.4 45 381-425 78-124 (298)
409 cd03688 eIF2_gamma_II eIF2_gam 97.5 0.00062 1.3E-08 61.2 8.5 89 502-591 3-109 (113)
410 PRK06731 flhF flagellar biosyn 97.4 0.0003 6.4E-09 73.7 7.4 129 296-426 74-225 (270)
411 PRK12723 flagellar biosynthesi 97.4 0.00023 5E-09 78.1 6.9 67 358-426 253-326 (388)
412 KOG1487 GTP-binding protein DR 97.4 0.00034 7.3E-09 71.3 7.2 83 299-397 61-150 (358)
413 PRK05703 flhF flagellar biosyn 97.4 0.0004 8.7E-09 77.3 8.4 67 358-426 298-371 (424)
414 TIGR00959 ffh signal recogniti 97.4 0.00019 4.2E-09 79.7 5.7 65 358-425 181-252 (428)
415 cd02038 FleN-like FleN is a me 97.4 0.00063 1.4E-08 63.9 8.0 105 300-424 3-109 (139)
416 PRK14721 flhF flagellar biosyn 97.3 0.00048 1E-08 76.2 8.0 128 296-426 190-340 (420)
417 TIGR02475 CobW cobalamin biosy 97.3 0.00059 1.3E-08 73.9 8.4 25 296-320 3-27 (341)
418 PRK01889 GTPase RsgA; Reviewed 97.3 0.00072 1.6E-08 73.7 9.0 46 381-426 110-156 (356)
419 cd03699 lepA_II lepA_II: This 97.3 0.0016 3.5E-08 56.1 9.2 77 505-592 1-85 (86)
420 KOG3859 Septins (P-loop GTPase 97.3 0.00088 1.9E-08 68.9 8.7 145 291-468 36-211 (406)
421 PRK09563 rbgA GTPase YlqF; Rev 97.3 0.0003 6.4E-09 74.4 5.6 57 367-425 7-64 (287)
422 cd04091 mtEFG1_II_like mtEFG1_ 97.3 0.0014 3.1E-08 55.7 8.8 75 505-592 1-80 (81)
423 KOG2485 Conserved ATP/GTP bind 97.3 0.00032 6.9E-09 73.4 5.4 58 298-371 144-207 (335)
424 cd02036 MinD Bacterial cell di 97.3 0.00049 1.1E-08 66.5 6.4 63 361-425 64-127 (179)
425 KOG1486 GTP-binding protein DR 97.3 0.00035 7.7E-09 70.8 5.4 82 299-396 64-152 (364)
426 PRK14723 flhF flagellar biosyn 97.2 0.00061 1.3E-08 80.1 7.7 128 297-426 185-337 (767)
427 COG3523 IcmF Type VI protein s 97.2 0.00049 1.1E-08 84.0 6.9 118 296-429 124-273 (1188)
428 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.0011 2.3E-08 70.2 8.7 46 381-426 76-123 (287)
429 PF14578 GTP_EFTU_D4: Elongati 97.2 0.0031 6.6E-08 53.7 9.6 75 504-593 4-81 (81)
430 COG1419 FlhF Flagellar GTP-bin 97.2 0.00085 1.8E-08 73.1 7.5 128 297-426 203-352 (407)
431 KOG2484 GTPase [General functi 97.2 0.00023 4.9E-09 76.6 2.8 57 296-371 251-308 (435)
432 PRK12288 GTPase RsgA; Reviewed 97.1 0.00042 9.1E-09 75.2 4.7 46 381-426 118-164 (347)
433 PRK06995 flhF flagellar biosyn 97.1 0.00094 2E-08 75.1 7.6 25 297-321 256-280 (484)
434 PRK11537 putative GTP-binding 97.1 0.00073 1.6E-08 72.5 6.4 129 296-426 3-164 (318)
435 smart00010 small_GTPase Small 97.1 0.001 2.2E-08 59.8 6.2 84 299-425 2-90 (124)
436 COG0552 FtsY Signal recognitio 97.1 0.00047 1E-08 73.2 4.1 25 295-319 137-161 (340)
437 KOG0447 Dynamin-like GTP bindi 97.1 0.0013 2.9E-08 72.8 7.5 65 360-426 412-493 (980)
438 cd03110 Fer4_NifH_child This p 97.0 0.0024 5.1E-08 62.2 8.1 66 358-425 91-156 (179)
439 PF09547 Spore_IV_A: Stage IV 97.0 0.0065 1.4E-07 66.5 11.6 23 298-320 18-40 (492)
440 PRK13695 putative NTPase; Prov 97.0 0.0015 3.3E-08 63.5 6.3 42 380-423 93-137 (174)
441 COG3640 CooC CO dehydrogenase 96.9 0.0015 3.3E-08 66.1 6.2 64 358-424 132-197 (255)
442 smart00275 G_alpha G protein a 96.9 0.0012 2.6E-08 71.5 5.9 67 360-426 184-265 (342)
443 KOG1707 Predicted Ras related/ 96.9 0.0025 5.5E-08 71.6 8.4 107 300-425 428-539 (625)
444 KOG0446 Vacuolar sorting prote 96.8 0.00038 8.2E-09 81.1 0.8 131 295-426 27-213 (657)
445 cd02042 ParA ParA and ParB of 96.8 0.0024 5.3E-08 56.3 5.7 72 299-395 1-73 (104)
446 cd02037 MRP-like MRP (Multiple 96.8 0.0043 9.4E-08 59.9 7.8 68 358-425 66-134 (169)
447 cd01983 Fer4_NifH The Fer4_Nif 96.8 0.0034 7.4E-08 53.4 6.3 94 299-420 1-99 (99)
448 cd04090 eEF2_II_snRNP Loc2 eEF 96.8 0.0045 9.7E-08 54.3 7.0 83 506-592 2-92 (94)
449 TIGR03597 GTPase_YqeH ribosome 96.7 0.0031 6.7E-08 68.9 7.3 55 370-426 50-104 (360)
450 PF11987 IF-2: Translation-ini 96.7 0.00057 1.2E-08 61.7 1.1 35 622-656 2-39 (108)
451 cd03111 CpaE_like This protein 96.7 0.0025 5.4E-08 57.1 5.1 59 361-421 44-106 (106)
452 KOG2423 Nucleolar GTPase [Gene 96.7 0.00073 1.6E-08 72.4 1.9 27 297-323 307-333 (572)
453 COG0541 Ffh Signal recognition 96.7 0.0024 5.3E-08 69.8 5.9 100 296-396 99-225 (451)
454 PF03205 MobB: Molybdopterin g 96.6 0.0012 2.6E-08 62.4 2.2 25 298-322 1-25 (140)
455 KOG2743 Cobalamin synthesis pr 96.6 0.0049 1.1E-07 64.3 6.7 29 292-320 52-80 (391)
456 cd03700 eEF2_snRNP_like_II EF2 96.4 0.015 3.3E-07 50.8 8.3 82 506-591 2-91 (93)
457 PRK01889 GTPase RsgA; Reviewed 96.4 0.0019 4.1E-08 70.4 3.1 24 298-321 196-219 (356)
458 PHA02518 ParA-like protein; Pr 96.4 0.0059 1.3E-07 60.7 6.0 64 359-424 76-145 (211)
459 PRK13849 putative crown gall t 96.2 0.0038 8.2E-08 64.0 3.5 64 358-423 82-151 (231)
460 PF06858 NOG1: Nucleolar GTP-b 96.2 0.0081 1.8E-07 47.7 4.4 43 381-423 11-58 (58)
461 PRK10751 molybdopterin-guanine 96.2 0.011 2.4E-07 57.8 6.5 26 295-320 4-29 (173)
462 cd04178 Nucleostemin_like Nucl 96.1 0.01 2.2E-07 58.0 6.0 42 385-426 1-44 (172)
463 TIGR03499 FlhF flagellar biosy 96.1 0.0039 8.4E-08 65.8 3.1 26 296-321 193-218 (282)
464 KOG0780 Signal recognition par 96.1 0.012 2.6E-07 63.4 6.6 25 294-318 98-122 (483)
465 KOG4181 Uncharacterized conser 96.1 0.006 1.3E-07 64.7 4.2 25 297-321 188-212 (491)
466 cd02032 Bchl_like This family 95.9 0.027 5.8E-07 58.6 8.4 65 359-424 115-184 (267)
467 KOG4364 Chromatin assembly fac 95.7 0.17 3.6E-06 57.7 13.8 15 115-129 322-336 (811)
468 COG1116 TauB ABC-type nitrate/ 95.7 0.0055 1.2E-07 62.8 2.2 26 296-321 28-53 (248)
469 PF05621 TniB: Bacterial TniB 95.5 0.017 3.6E-07 61.1 4.9 30 292-321 56-85 (302)
470 PF13671 AAA_33: AAA domain; P 95.5 0.0065 1.4E-07 56.4 1.6 21 299-319 1-21 (143)
471 PF13555 AAA_29: P-loop contai 95.4 0.0093 2E-07 48.3 2.1 22 299-320 25-46 (62)
472 PF13401 AAA_22: AAA domain; P 95.4 0.0026 5.6E-08 58.1 -1.3 24 298-321 5-28 (131)
473 cd02117 NifH_like This family 95.4 0.062 1.3E-06 54.0 8.4 65 359-424 116-187 (212)
474 PRK14493 putative bifunctional 95.3 0.03 6.5E-07 58.9 6.1 22 298-319 2-23 (274)
475 PRK13796 GTPase YqeH; Provisio 95.2 0.05 1.1E-06 59.6 7.6 52 372-426 58-110 (365)
476 cd01120 RecA-like_NTPases RecA 95.2 0.028 6E-07 52.6 4.9 23 299-321 1-23 (165)
477 COG1135 AbcC ABC-type metal io 95.1 0.021 4.5E-07 60.3 4.2 25 296-320 31-55 (339)
478 TIGR01281 DPOR_bchL light-inde 95.1 0.076 1.6E-06 55.2 8.5 65 359-424 115-184 (268)
479 COG1126 GlnQ ABC-type polar am 95.1 0.012 2.5E-07 59.2 2.2 26 296-321 27-52 (240)
480 PF00503 G-alpha: G-protein al 95.1 0.039 8.4E-07 60.9 6.4 69 358-426 234-317 (389)
481 KOG0781 Signal recognition par 95.0 0.061 1.3E-06 59.6 7.4 133 293-426 374-544 (587)
482 COG1136 SalX ABC-type antimicr 94.9 0.014 3E-07 59.4 2.2 27 296-322 30-56 (226)
483 PF05879 RHD3: Root hair defec 94.9 0.034 7.4E-07 66.2 5.8 76 303-391 1-88 (742)
484 COG1763 MobB Molybdopterin-gua 94.9 0.038 8.3E-07 53.4 5.0 23 298-320 3-25 (161)
485 PF03266 NTPase_1: NTPase; In 94.7 0.01 2.2E-07 57.8 0.4 21 300-320 2-22 (168)
486 PF00005 ABC_tran: ABC transpo 94.6 0.022 4.7E-07 52.6 2.5 26 297-322 11-36 (137)
487 KOG0082 G-protein alpha subuni 94.6 0.056 1.2E-06 58.4 5.8 71 355-425 190-275 (354)
488 KOG2412 Nuclear-export-signal 94.6 0.19 4.2E-06 56.2 10.0 68 100-167 210-278 (591)
489 KOG1029 Endocytic adaptor prot 94.6 0.22 4.8E-06 57.6 10.6 10 415-424 837-846 (1118)
490 cd03116 MobB Molybdenum is an 94.6 0.052 1.1E-06 52.4 5.0 23 298-320 2-24 (159)
491 COG3840 ThiQ ABC-type thiamine 94.6 0.025 5.4E-07 55.5 2.8 28 296-323 24-51 (231)
492 COG0194 Gmk Guanylate kinase [ 94.5 0.09 1.9E-06 51.8 6.4 26 296-321 3-28 (191)
493 COG4088 Predicted nucleotide k 94.5 0.021 4.6E-07 56.9 2.1 116 298-437 2-127 (261)
494 COG1120 FepC ABC-type cobalami 94.4 0.022 4.7E-07 59.2 2.2 26 296-321 27-52 (258)
495 PF13207 AAA_17: AAA domain; P 94.4 0.025 5.4E-07 51.0 2.4 21 299-319 1-21 (121)
496 KOG1029 Endocytic adaptor prot 94.4 0.47 1E-05 55.0 12.7 8 531-538 925-932 (1118)
497 PRK11519 tyrosine kinase; Prov 94.4 0.08 1.7E-06 63.2 7.1 66 359-425 635-701 (719)
498 COG0532 InfB Translation initi 94.0 0.15 3.2E-06 57.5 7.8 89 505-601 414-505 (509)
499 TIGR01007 eps_fam capsular exo 94.0 0.088 1.9E-06 52.4 5.6 63 360-423 128-191 (204)
500 KOG3022 Predicted ATPase, nucl 94.0 0.17 3.7E-06 52.7 7.6 125 295-419 46-217 (300)
No 1
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-104 Score=862.89 Aligned_cols=620 Identities=54% Similarity=0.809 Sum_probs=469.6
Q ss_pred CCcccccccccccHhHHHHhhccCCCCCCCCccccccCCCCCCCcchhh---------hhhhhhhhhhHHHHHHHHHHHH
Q 036359 2 GQKKRTVFQEEDDIDKILAEFSKMEVSATPPLEEKVEVRPQPSPKEESA---------RTNRNRNRKRKEKQKEKKAAAA 72 (657)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~k~~~kke~~k~~k~~~~ 72 (657)
+.++++++++++|+|+||+++|.++.+.+ ..++..++|.+++|++.| .+ +|+++|+++++.+..+.+
T Consensus 99 K~~kk~~~eE~~d~dkllas~~ek~~~~s--~~e~~~~qpe~va~~eaa~~~ekkek~~a--kKkkeKkek~~~~~~~~~ 174 (1064)
T KOG1144|consen 99 KKKKKGKAEEEDDLDKLLASLGEKDEPAS--EKEKKEAQPENVAPVEAAGEKEKKEKAAA--KKKKEKKEKEKKKEDSAA 174 (1064)
T ss_pred ccccccccccccchHHHhhhcCCCCCccc--hhhhhhcCccccCCccCCCchhhHHHHHH--hhhhhhhhhhhhhhhhhh
Confidence 45678899999999999999999985555 344445677777764433 33 334444444443332222
Q ss_pred HH--H----Hhhhhhc---------cccccccCCCccHH----HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Q 036359 73 AE--K----QEMETEA---------EEPQKIKAPNKRLE----FIRAEIDRRNHAIQKRLREKGEQKR--------QEEL 125 (657)
Q Consensus 73 ~~--~----~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~eee~~~--------~ee~ 125 (657)
++ + ++..+++ +..++.|+.+++.+ .||++|+++++++|+++|++||+.| ++|+
T Consensus 175 a~~~~~~e~ke~~~ek~~~~p~e~ekk~ak~Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~ 254 (1064)
T KOG1144|consen 175 AAAEKSVEAKEEKKEKSVTEPAEPEKKEAKGKKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEE 254 (1064)
T ss_pred ccchhhhhHHHHhhhhcccCcccccccchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 1111110 11111233333333 9999999999999988873333333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhhh--------------ccchhhccc-----
Q 036359 126 DRQAEEAKLRKKEKEKEKKQKA---------KQREQQRQLESRRNQLQANAV--------------KQYAEVEES----- 177 (657)
Q Consensus 126 ~~~~e~~~~~~~~~~~~~~~~~---------k~~~e~~~~e~~~~~~~~~~~--------------~~~~~~~~~----- 177 (657)
+++++|.++++++++++++++. +|+++++.++++++++|++++ |+|.+.+.+
T Consensus 255 E~~~eEak~kkKekekek~er~KaeGklLTakQK~~~a~aea~l~~ll~sg~~~~va~kdg~~kKrpiY~nKKk~~rq~~ 334 (1064)
T KOG1144|consen 255 EAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDGDSKKRPIYANKKKKARQKG 334 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHHHHHHHHHHHHHHhcCCCCCCCcccCCcccCcccccccccccccc
Confidence 3333333344444444444444 566688999999999998863 799974421
Q ss_pred ---------------c-----C------CCCCcccccchhhhh----------c---cCCC-cccCCCCCCCccccchH-
Q 036359 178 ---------------E-----I------GPEEEEEDTNEEWDA----------K---TMDD-FTFTFNDTFDDEEVDSV- 216 (657)
Q Consensus 178 ---------------~-----~------~~~~ee~~~~~~wd~----------~---~~dd-~~~~~~~~~~~~~~~~~- 216 (657)
+ . .....++-.-++|+. . .||. ++....+++||.+....
T Consensus 335 ~~~~s~~~~~~~~~~e~~~~~~~~~d~~~~~~~e~~~~~e~e~~~~dv~~e~g~~e~~~~~k~~~~~~~d~dd~ee~~~e 414 (1064)
T KOG1144|consen 335 NDRTSVEKLGEVEAKENHAGDVGSVDTEEVDLEEDSNTDEKEGTPEDVDQEEGEEEDDWDAKVDLAIDGDDDDDEEELQE 414 (1064)
T ss_pred cchhhhhhcccCchhhhccCCCCCCcchhhccccccCCcccccCCCChhhhhcccchhhhccccccccccccchhhhhch
Confidence 0 0 000111112223332 1 1332 44445555555443322
Q ss_pred HHHhhhhccCCCCCCCCCCCCCchhhhhhcCCCCCCCCCCccccCCCCccch-hhhhhhhhhhccCCCccccchhhhccC
Q 036359 217 QVKKKIKSSVLSPNDAGPAVANPKFAIKKAIPLQPENSQDTETKNSQPEVAD-KTRKKDATAKNKTPSADATFKQAEENL 295 (657)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (657)
+..++.++...+.++.+.. . ........+.+.+ .++..+. +...+.........+.++
T Consensus 415 ~~~~e~~e~~~~~e~s~~~--~-----------------~~a~~k~~~~~~d~~t~~~~~--~~~~~~~~~~~~~~~~~l 473 (1064)
T KOG1144|consen 415 EVDKELKEAEEEEEDSEKP--T-----------------EDAAVKAISKVEDAATRTKRA--KIAKRATNESANESTENL 473 (1064)
T ss_pred hhhhcccccccchhhcccc--c-----------------cccccccccccchhhhhhhhc--chhccCchhhccccchhc
Confidence 2333333322211111000 0 0000111122222 1222222 233333444445667889
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccc--cCCCcEEEEeCCCCCcc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAK--LKVPGLLVVDTPGHESF 373 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~--~~~~~l~iIDTPGh~~f 373 (657)
|+|+||||||||+|||.|+++|++++|+.+++|||||+||++||+..+++.++..+..... ++.+++++||||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 9999999999999999999999999999999999999999999999999999988865544 88899999999999999
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHH
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKM 453 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~ 453 (657)
++++.||.++||++|||||++||+.+||+++|++|+..++||||++||+|++|+|..+++++|..+|.+|..+++++|..
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~ 633 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKE 633 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh---------------hhccccccceeEEEEEeecCc
Q 036359 454 RLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK---------------KLAFRNEVQCTILEVKVCEGY 518 (657)
Q Consensus 454 ~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e---------------~l~~~~~~~~~Vlev~~~~g~ 518 (657)
++..|+.+|.++|+|..+||.|.+++.+|++||+||++|.+|-+ .|.|...+.|+|++|+.++|+
T Consensus 634 R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~ 713 (1064)
T KOG1144|consen 634 RLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGH 713 (1064)
T ss_pred HHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCC
Confidence 99999999999999999999999999999999999999766543 456788899999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEE-----eccccchhhccCCCCCceeEEeeeeecccccccccccEEEecCCCCCCCCCeEEE
Q 036359 519 GTTIDVVLINGVLHEGDKIV-----EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQGIKITAQGLQDAIAGTSLYV 593 (657)
Q Consensus 519 GtVv~g~v~~G~Lk~Gd~I~-----gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~gv~i~~~gl~~~~aG~~l~v 593 (657)
||+|++++.||.|+.||.|+ ||++|.||+||+|+|++++||++-|+||++|.+|+||+|++.||+++++|+.|+|
T Consensus 714 GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~V 793 (1064)
T KOG1144|consen 714 GTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLV 793 (1064)
T ss_pred CceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEE
Confidence 99999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHHhhhhhhhcHHHHhhhhccccccEEEEcCccchHHHHHHhcccCC
Q 036359 594 VGPNDDLEDVKKAAMEEMKSVTEAASEGMKSVMSKVDKTCEGVCMQASTWGSLEALLAFSYPQK 657 (657)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vkad~~gslea~~~~l~~~~ 657 (657)
+.|+|+++.++..+|.++ +++|++|+.++.||||+|+||||||||++||++.|
T Consensus 794 vgpeDd~e~lk~~~m~dl-----------~~~l~~Id~sgeGv~vqastlgslealleflk~~k 846 (1064)
T KOG1144|consen 794 VGPEDDIEELKEEAMEDL-----------ESVLSRIDKSGEGVYVQASTLGSLEALLEFLKTVK 846 (1064)
T ss_pred eCCcccHHHHHHHHHHHH-----------HHHHHHhhccCCceEEEecccchHHHHHHHHhhcC
Confidence 999999999999999999 99999999999999999999999999999998754
No 2
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-56 Score=485.29 Aligned_cols=305 Identities=35% Similarity=0.524 Sum_probs=260.8
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
..|+|+|+||||+||||||||+.|+.+++..++++|||||||+|+++++.. +.+.|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 469999999999999999999999999999999999999999999998632 2246999999999999
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHH
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKM 453 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~ 453 (657)
++|+.||++.||++|||||+++|++|||.+++.+++.+++||||++||||++. ++
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~-------~n------------------ 123 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE-------AN------------------ 123 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC-------CC------------------
Confidence 99999999999999999999999999999999999999999999999999973 32
Q ss_pred HHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc--------------cccccceeEEEEEeecCce
Q 036359 454 RLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA--------------FRNEVQCTILEVKVCEGYG 519 (657)
Q Consensus 454 ~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~--------------~~~~~~~~Vlev~~~~g~G 519 (657)
+..+..+|.++||+++.| ++.+.|||+||++|.++.++|. ...+..++|+++..++|+|
T Consensus 124 -p~~v~~el~~~gl~~E~~------gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G 196 (509)
T COG0532 124 -PDKVKQELQEYGLVPEEW------GGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLG 196 (509)
T ss_pred -HHHHHHHHHHcCCCHhhc------CCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCC
Confidence 346778899999999875 4569999999999998877653 2356899999999999999
Q ss_pred eEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cccEEEecCCCCC-CCCCeEEEcCC
Q 036359 520 TTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQGLQDA-IAGTSLYVVGP 596 (657)
Q Consensus 520 tVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~gl~~~-~aG~~l~v~~~ 596 (657)
++++++|++|+|++||.|+ |..+++||+|++... .++..+ ++..+.+.|++.+ .+|+.++++++
T Consensus 197 ~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~-------------~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~ 263 (509)
T COG0532 197 PVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLG-------------KPIKEAGPSKPVEILGLSEVPAAGDVFIVVKD 263 (509)
T ss_pred ceEEEEEecCeEecCCEEEEccCCCceEEeehhcC-------------CCccccCCCCCeEEeccccccccCceEEecCC
Confidence 9999999999999999999 999999998887652 333433 6788888899997 89999999999
Q ss_pred CccHHHHHHHHHHH--HHHhhhhhhhcHHHHhhhhc----cccccEEEEcCccchHHHHHHhcccC
Q 036359 597 NDDLEDVKKAAMEE--MKSVTEAASEGMKSVMSKVD----KTCEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 597 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~v~vkad~~gslea~~~~l~~~ 656 (657)
++.++.+...+... ..........+++++++.+. ....||||||||+||||||..+|++.
T Consensus 264 e~~A~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~ 329 (509)
T COG0532 264 EKKARAIAELRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKL 329 (509)
T ss_pred hHHHhhhhhHhhhhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhc
Confidence 99988887765433 11112234566777777775 23479999999999999999999864
No 3
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=1.8e-54 Score=490.13 Aligned_cols=349 Identities=42% Similarity=0.704 Sum_probs=300.5
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccc--cccccCCCcEEEEeCCCCC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLN--ADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~--~~~~~~~~~l~iIDTPGh~ 371 (657)
++|+|+|+|+||+|||||||+++|++..+..+..+|+|+++|+++++++.....+.... ....++.++++|||||||.
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 37999999999999999999999999998888889999999999988764432111110 0112333469999999999
Q ss_pred cchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 372 SFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 372 ~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
.|..++.++++.+|++|||||+++|+++||++++.+++..++|+|+|+||+|+..+|....+.+|..++..+...+...|
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989998889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc-----------------cccccceeEEEEEe
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-----------------FRNEVQCTILEVKV 514 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-----------------~~~~~~~~Vlev~~ 514 (657)
...+..++.+|.++|+..+.|+...+|+..+++||+||+||.+|.+++. ...+++|+|++++.
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEE
Confidence 9999999999999999999999988999999999999999887765431 23468999999999
Q ss_pred ecCceeEEEEEEEeeeecCCCEEE-e----ccccchhhccCCCCCceeEEeee-eecccccccccccEEEecCCCCCCCC
Q 036359 515 CEGYGTTIDVVLINGVLHEGDKIV-E----PIDTKIQALLTPHPMKELRVKGA-YQHHKEIKAAQGIKITAQGLQDAIAG 588 (657)
Q Consensus 515 ~~g~GtVv~g~v~~G~Lk~Gd~I~-g----p~~~~Vr~ll~p~~~~e~rVksi-~~~~~~v~~a~gv~i~~~gl~~~~aG 588 (657)
++|+|+|++|+|++|+|++||+|+ | |+.++||+|++|.|++++|+.+. +.++..+.+++|++|.+.||+.+.+|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 999999999999999999999999 4 45679999999999999998754 67888888999999999999999999
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhhhhhhhcHHHHhhhhccccccEEEEcCccchHHHHHHhcccC
Q 036359 589 TSLYVVGPNDDLEDVKKAAMEEMKSVTEAASEGMKSVMSKVDKTCEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 589 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vkad~~gslea~~~~l~~~ 656 (657)
+.|++++ ++.+..+++.++.++ ..+ .+.....||||||||+||||||+++|++.
T Consensus 321 ~~~~~~~-~e~~~~~~~~~~~~~-----------~~~--~~~~~~~~vivkad~~Gs~EAl~~~l~~~ 374 (590)
T TIGR00491 321 SPIRVVT-DEEIEKVKEEILKEV-----------EEI--KIDTDEEGVVVKADTLGSLEALVNELRDM 374 (590)
T ss_pred CEEEEcC-cHHHHHHHHHHHHHh-----------hhc--ccccccccEEEEecCcchHHHHHHHHHhC
Confidence 9998774 455566666665544 222 24566789999999999999999999865
No 4
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.1e-53 Score=483.16 Aligned_cols=350 Identities=46% Similarity=0.730 Sum_probs=300.9
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhcccc--ccccCCCcEEEEeCCCC
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNA--DAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~--~~~~~~~~l~iIDTPGh 370 (657)
.++|+|+|+||||+|||||||+++|++..+..+..+|+|+++|++++++............ ...+..++++|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 4589999999999999999999999999988888999999999988876543211110000 12233346899999999
Q ss_pred CcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 371 ESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 371 ~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
.+|..++.+++..+|++|||||+++|+.+||++++.++...++|+|+|+||+|+..+|....+..|..++..+...+...
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899888899999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc-----------------cccccceeEEEEE
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-----------------FRNEVQCTILEVK 513 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-----------------~~~~~~~~Vlev~ 513 (657)
|...+..+..+|...||+...||....|+..+++||+||++|.++.+++. ...+++++|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 99999999999999999999999988999999999999999887744221 2346899999999
Q ss_pred eecCceeEEEEEEEeeeecCCCEEE-ecc----ccchhhccCCCCCceeE-EeeeeecccccccccccEEEecCCCCCCC
Q 036359 514 VCEGYGTTIDVVLINGVLHEGDKIV-EPI----DTKIQALLTPHPMKELR-VKGAYQHHKEIKAAQGIKITAQGLQDAIA 587 (657)
Q Consensus 514 ~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~----~~~Vr~ll~p~~~~e~r-Vksi~~~~~~v~~a~gv~i~~~gl~~~~a 587 (657)
.++|.|+|++++|++|+|++||.|+ ||. .++||+|++|.|++++| +++-+.+++.+.++++|.|.+.||+++.+
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 9999999999999999999999999 554 45999999999999999 88888899999999999999999999999
Q ss_pred CCeEEEcCCCccHHHHHHHHHHHHHHhhhhhhhcHHHHhhhhccccccEEEEcCccchHHHHHHhcccC
Q 036359 588 GTSLYVVGPNDDLEDVKKAAMEEMKSVTEAASEGMKSVMSKVDKTCEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 588 G~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vkad~~gslea~~~~l~~~ 656 (657)
|+.|+++.+ ++...+...++.++ .++ .+.....||||||||+||||||+++|++.
T Consensus 322 g~~~~v~~~-~~~~~~~~~~~~~~-----------~~~--~~~~~~~~vivkad~~Gs~EAi~~~l~~~ 376 (586)
T PRK04004 322 GSPLRVVRD-EDVEEVKEEVEEEI-----------EEI--RIETDEEGVVVKADTLGSLEALVNELREE 376 (586)
T ss_pred CCeEEEeCc-HHHHHHHHHHHHHH-----------Hhc--cccccccCEEEEeCCccHHHHHHHHHHhC
Confidence 999999977 45555555544443 222 24566789999999999999999999864
No 5
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=5.7e-53 Score=497.32 Aligned_cols=339 Identities=40% Similarity=0.645 Sum_probs=302.6
Q ss_pred EEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccc--cccccCCCcEEEEeCCCCCcchhhhh
Q 036359 301 CILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLN--ADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 301 ~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~--~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
+|++| |||||++|+++++..+++||||||||+++++++.+...|..+. ....++.++++|||||||..|..++.
T Consensus 469 ~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~ 544 (1049)
T PRK14845 469 GILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRK 544 (1049)
T ss_pred eeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHH
Confidence 45555 9999999999999999999999999999999987665544332 12335567899999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHH
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNI 458 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~i 458 (657)
++++.+|++|||||+++|+++||.+++.++...++|+|+|+||+|++++|...++.+|..++..|...+..++..++..+
T Consensus 545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred hhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc-----------------cccccceeEEEEEeecCceeE
Q 036359 459 ITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-----------------FRNEVQCTILEVKVCEGYGTT 521 (657)
Q Consensus 459 i~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-----------------~~~~~~~~Vlev~~~~g~GtV 521 (657)
+.+|.+.|++++.||.+.+|+..++||||||+||.+|.+++. ...+++|+|++++.++|.|+|
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~v 704 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTT 704 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeE
Confidence 999999999999999999999999999999999888766432 124688999999999999999
Q ss_pred EEEEEEeeeecCCCEEE-ec----cccchhhccCCCCCceeEEee-eeecccccccccccEEEecCCCCCCCCCeEEEcC
Q 036359 522 IDVVLINGVLHEGDKIV-EP----IDTKIQALLTPHPMKELRVKG-AYQHHKEIKAAQGIKITAQGLQDAIAGTSLYVVG 595 (657)
Q Consensus 522 v~g~v~~G~Lk~Gd~I~-gp----~~~~Vr~ll~p~~~~e~rVks-i~~~~~~v~~a~gv~i~~~gl~~~~aG~~l~v~~ 595 (657)
++|+|++|+|++||+|+ || ++++||+|++|.|++++|+.+ -|.+++.+.+++||.|++.||+.+.+|+.|++++
T Consensus 705 vt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v~~ 784 (1049)
T PRK14845 705 IDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRIVP 784 (1049)
T ss_pred EEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEEeC
Confidence 99999999999999999 54 599999999999999999765 6788999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhhcHHHHhhhhccccccEEEEcCccchHHHHHHhcccC
Q 036359 596 PNDDLEDVKKAAMEEMKSVTEAASEGMKSVMSKVDKTCEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vkad~~gslea~~~~l~~~ 656 (657)
++++++.+++.++.++ +++ .+.....||||||||+||||||+++|++.
T Consensus 785 ~e~~~~~~~~~~~~~~-----------~~~--~~~~~~~~vivKaDt~GSlEAl~~~L~~~ 832 (1049)
T PRK14845 785 TKEKIEKAKEEVMKEV-----------EEA--KIETDKEGILIKADTLGSLEALANELRKA 832 (1049)
T ss_pred CHHHHHHHHHHHHHHH-----------hhh--ccCcceeeEEEEecccchHHHHHHHHHhC
Confidence 9988888877777666 332 24566789999999999999999999865
No 6
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-49 Score=426.04 Aligned_cols=303 Identities=30% Similarity=0.464 Sum_probs=252.6
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
..|+|+|.||||+||||||||++|+.+.+..+++||||||||++.++...- ..++|+|||||..|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G---------------~~iTFLDTPGHaAF 214 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG---------------KSITFLDTPGHAAF 214 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC---------------CEEEEecCCcHHHH
Confidence 359999999999999999999999999999999999999999999887632 34999999999999
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHH
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKM 453 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~ 453 (657)
..|+.||+..+|++||||.+++|++|||.++|.+++..++|+||++||||++ ++++
T Consensus 215 ~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp-------~a~p----------------- 270 (683)
T KOG1145|consen 215 SAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP-------GANP----------------- 270 (683)
T ss_pred HHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC-------CCCH-----------------
Confidence 9999999999999999999999999999999999999999999999999984 6664
Q ss_pred HHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhh--------------ccccccceeEEEEEeecCce
Q 036359 454 RLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKL--------------AFRNEVQCTILEVKVCEGYG 519 (657)
Q Consensus 454 ~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l--------------~~~~~~~~~Vlev~~~~g~G 519 (657)
..++.+|..+|+..+ ++|+++++||+||++|.+|..+. ....++.+.|.|++.++|+|
T Consensus 271 --ekv~~eL~~~gi~~E------~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G 342 (683)
T KOG1145|consen 271 --EKVKRELLSQGIVVE------DLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRG 342 (683)
T ss_pred --HHHHHHHHHcCccHH------HcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCcc
Confidence 567778889998875 57899999999999998876532 23557999999999999999
Q ss_pred eEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cccEEEecCCCCC-CCCCeEEEcCC
Q 036359 520 TTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQGLQDA-IAGTSLYVVGP 596 (657)
Q Consensus 520 tVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~gl~~~-~aG~~l~v~~~ 596 (657)
.+.+++|..|||+.|+.++ |-.+++||+|++.. .+++..| ++..+-+.|+.++ .+||-++.|.+
T Consensus 343 ~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~n-------------Gk~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeS 409 (683)
T KOG1145|consen 343 PVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHN-------------GKPIDEATPSQPVEVLGWKDLPIAGDEVLEVES 409 (683)
T ss_pred ceeEEEEeccccccccEEEEechhhhhhhhhhcC-------------CCCccccCCCCceEeecccCCCCCCceEEEEec
Confidence 9999999999999999999 99999999999875 3556656 5788888899987 89999999999
Q ss_pred CccHHHHHHHHHHHHHHhh--------hh----hhhcH----HHHhh-----hhcccc----ccEEEEcCccchHHHHHH
Q 036359 597 NDDLEDVKKAAMEEMKSVT--------EA----ASEGM----KSVMS-----KVDKTC----EGVCMQASTWGSLEALLA 651 (657)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~--------~~----~~~~~----~~~~~-----~~~~~~----~~v~vkad~~gslea~~~ 651 (657)
++.++.+.+.+..++.... +. ....+ ++-+. +++... .+||||+|++||+|||++
T Consensus 410 e~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d 489 (683)
T KOG1145|consen 410 EDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLD 489 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHH
Confidence 9998887664333321000 00 00000 00111 233332 579999999999999999
Q ss_pred hcccC
Q 036359 652 FSYPQ 656 (657)
Q Consensus 652 ~l~~~ 656 (657)
+|+..
T Consensus 490 ~L~tl 494 (683)
T KOG1145|consen 490 ALSTL 494 (683)
T ss_pred HHhhc
Confidence 99754
No 7
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.7e-45 Score=417.73 Aligned_cols=304 Identities=32% Similarity=0.465 Sum_probs=247.8
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
...|+|+|+||||+|||||||+++|+++++..+..+|+|++++.+.+.+... ..++|||||||.+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEA 147 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcc
Confidence 3468999999999999999999999999998888899999999887776421 1489999999999
Q ss_pred chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHH
Q 036359 373 FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFK 452 (657)
Q Consensus 373 f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~ 452 (657)
|..++.+++..+|++|||||+++|+++||.++|.++...++|+|||+||+|+.. +++
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~-------~~~---------------- 204 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE-------ANP---------------- 204 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc-------CCH----------------
Confidence 999999999999999999999999999999999999999999999999999952 221
Q ss_pred HHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc--------------cccccceeEEEEEeecCc
Q 036359 453 MRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA--------------FRNEVQCTILEVKVCEGY 518 (657)
Q Consensus 453 ~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~--------------~~~~~~~~Vlev~~~~g~ 518 (657)
..+...|...|+... .|+..+++||+||++|.++.+++. +..+++++|++++.++|.
T Consensus 205 ---e~v~~~L~~~g~~~~------~~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~ 275 (587)
T TIGR00487 205 ---DRVKQELSEYGLVPE------DWGGDTIFVPVSALTGDGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGR 275 (587)
T ss_pred ---HHHHHHHHHhhhhHH------hcCCCceEEEEECCCCCChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCC
Confidence 233444555555443 234568999999999888766432 235789999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cccEEEecCCCCC-CCCCeEEEcC
Q 036359 519 GTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQGLQDA-IAGTSLYVVG 595 (657)
Q Consensus 519 GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~gl~~~-~aG~~l~v~~ 595 (657)
|+|++++|++|+|++||.|+ ||.+++||+|++++. ..+..| +|..+.+.||+.+ .+|+.|+++.
T Consensus 276 G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l~~~~g-------------~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~ 342 (587)
T TIGR00487 276 GPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENG-------------KSVKEAGPSKPVEILGLSDVPAAGDEFIVFK 342 (587)
T ss_pred cEEEEEEEEeCEEeCCCEEEECCCccEEEEEECCCC-------------CCCCEECCCCEEEEeCCCCCCCCCCEEEEcC
Confidence 99999999999999999999 998888887777542 344444 5777777799987 9999999999
Q ss_pred CCccHHHHHHHHHHHHHHh--hhhhhhcHHHHhhhhcc---ccccEEEEcCccchHHHHHHhcccC
Q 036359 596 PNDDLEDVKKAAMEEMKSV--TEAASEGMKSVMSKVDK---TCEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~v~vkad~~gslea~~~~l~~~ 656 (657)
+++.++.+.+.+.+..+.. ......+|++++..+.. ...+|||||||+||||||.++|.+.
T Consensus 343 ~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~ 408 (587)
T TIGR00487 343 DEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKL 408 (587)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhh
Confidence 9988888877655433322 11224678888877765 4579999999999999999999864
No 8
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.3e-45 Score=423.20 Aligned_cols=303 Identities=33% Similarity=0.473 Sum_probs=248.8
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
...|+|+|+||||+|||||||+++|+++.+..+..+|||++++.+.+.+.. +.|+|||||||.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~----------------~~ItfiDTPGhe~ 349 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG----------------GKITFLDTPGHEA 349 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC----------------EEEEEEECCCCcc
Confidence 357999999999999999999999999999888899999999988877643 2489999999999
Q ss_pred chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHH
Q 036359 373 FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFK 452 (657)
Q Consensus 373 f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~ 452 (657)
|..++.+++..+|++|||||+++|+++||.++|.++...++|+|||+||||+.. .++
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~-------a~~---------------- 406 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG-------ANP---------------- 406 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc-------cCH----------------
Confidence 999999999999999999999999999999999999999999999999999952 221
Q ss_pred HHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc--------------ccccceeEEEEEeecCc
Q 036359 453 MRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF--------------RNEVQCTILEVKVCEGY 518 (657)
Q Consensus 453 ~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~--------------~~~~~~~Vlev~~~~g~ 518 (657)
..+...|...|+.+. .|+..++|||+||++|.+|.+++.. ..++.++|++++.++|.
T Consensus 407 ---e~V~~eL~~~~~~~e------~~g~~vp~vpvSAktG~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~ 477 (787)
T PRK05306 407 ---DRVKQELSEYGLVPE------EWGGDTIFVPVSAKTGEGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGR 477 (787)
T ss_pred ---HHHHHHHHHhcccHH------HhCCCceEEEEeCCCCCCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCC
Confidence 223333444444332 2456789999999998887665432 23588999999999999
Q ss_pred eeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cccEEEecCCCCC-CCCCeEEEcC
Q 036359 519 GTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQGLQDA-IAGTSLYVVG 595 (657)
Q Consensus 519 GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~gl~~~-~aG~~l~v~~ 595 (657)
|+|++++|++|+|+.||.|+ ||.+++|++|++.+ +..+..| +|..+.+.||+++ .+|+.|+++.
T Consensus 478 G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~m~~~~-------------~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~ 544 (787)
T PRK05306 478 GPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDN-------------GKRVKEAGPSTPVEILGLSGVPQAGDEFVVVE 544 (787)
T ss_pred eEEEEEEEecCeEecCCEEEECCcEEEEEEEECCC-------------CCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcC
Confidence 99999999999999999999 88877777776543 3455555 6888888899998 9999999999
Q ss_pred CCccHHHHHHHHHHHHHH--hhhhhhhcHHHHhhhhccc---cccEEEEcCccchHHHHHHhcccC
Q 036359 596 PNDDLEDVKKAAMEEMKS--VTEAASEGMKSVMSKVDKT---CEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~v~vkad~~gslea~~~~l~~~ 656 (657)
++..++.+...+....+. .......+|++++..+..+ ..+|||||||+||+|||..+|.+.
T Consensus 545 ~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l 610 (787)
T PRK05306 545 DEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKL 610 (787)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhh
Confidence 988888887765443322 1222357889998888665 479999999999999999998753
No 9
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.3e-42 Score=399.30 Aligned_cols=304 Identities=32% Similarity=0.448 Sum_probs=240.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.|+|+|+||||+|||||||+++|+...+..++.+|+|++++++.+.+.... ....|+|||||||..|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~------------~~~kItfiDTPGhe~F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKD------------ENQKIVFLDTPGHEAFS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecC------------CceEEEEEECCcHHHHH
Confidence 588899999999999999999999998888888999999998776653210 12359999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.++.+++..+|++|||||+++|+++||+++|.++...++|+|||+||||+.. .++
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~-------~~~------------------ 364 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN-------ANT------------------ 364 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc-------cCH------------------
Confidence 9999999999999999999999999999999999999999999999999963 111
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc--------------ccccceeEEEEEeecCcee
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF--------------RNEVQCTILEVKVCEGYGT 520 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~--------------~~~~~~~Vlev~~~~g~Gt 520 (657)
..+...|...++.+. .++..+++||+||++|.++.+++.. ..++.++|++++.+++.|+
T Consensus 365 -e~v~~eL~~~~ll~e------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~ 437 (742)
T CHL00189 365 -ERIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGP 437 (742)
T ss_pred -HHHHHHHHHhccchH------hhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCce
Confidence 223333433333322 2345789999999999888665432 2357789999999999999
Q ss_pred EEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cccEEEecCCCC-CCCCCeEEEcCCC
Q 036359 521 TIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQGLQD-AIAGTSLYVVGPN 597 (657)
Q Consensus 521 Vv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~gl~~-~~aG~~l~v~~~~ 597 (657)
|++++|++|+|+.||.|+ ||.+++||+|+... +..+..| +|..+.+.||.. ..+|+.|+++.++
T Consensus 438 V~~~~V~sGtLr~GD~vv~g~~~gkVr~m~~~~-------------~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e 504 (742)
T CHL00189 438 VATILVQNGTLHIGDIIVIGTSYAKIRGMINSL-------------GNKINLATPSSVVEIWGLSSVPATGEHFQVFNSE 504 (742)
T ss_pred EEEEEEEcCEEecCCEEEECCcceEEEEEEcCC-------------CcCccEEcCCCceEecCcccCCCCCCEEEEeCCH
Confidence 999999999999999999 99888888887664 2344444 688888899965 5789999999988
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhcHHHHhhhhcc---ccccEEEEcCccchHHHHHHhcccC
Q 036359 598 DDLEDVKKAAMEEMKSVTEAASEGMKSVMSKVDK---TCEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~vkad~~gslea~~~~l~~~ 656 (657)
..++.+........+. ......++++++..+.. ...+|||||||+||||||+++|.+.
T Consensus 505 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~ 565 (742)
T CHL00189 505 KEAKLKIIKNKENNKK-DTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQI 565 (742)
T ss_pred HHHHHHHHHHHHHHHH-hhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhc
Confidence 8887776654333211 11224566666655544 3579999999999999999999754
No 10
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-37 Score=322.96 Aligned_cols=243 Identities=26% Similarity=0.410 Sum_probs=203.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc-------------------------------ccccccCceeeeccceeeeccccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPVENIQ 345 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~-------------------------------v~~~~~~GiT~~ig~~~~~~~~~~ 345 (657)
+..++|+||+|||||||+++|+... ...++.+|+|..++...|..+.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k-- 84 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK-- 84 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC--
Confidence 3459999999999999999997321 2334567888888777777654
Q ss_pred chhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-------CchhHHHHHHHHHhcCCc-eEE
Q 036359 346 KRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------IKPQTIESLDLLKERSVD-FII 417 (657)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-------~~~qt~e~l~~l~~~~vP-iIv 417 (657)
+.|+|||||||.+|..++..|+++||++|||||++.| +.+||++|+.+++.+|+. +||
T Consensus 85 --------------~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIV 150 (428)
T COG5256 85 --------------YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIV 150 (428)
T ss_pred --------------ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEE
Confidence 3499999999999999999999999999999999998 899999999999999998 999
Q ss_pred EecccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh
Q 036359 418 ALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK 497 (657)
Q Consensus 418 vlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e 497 (657)
++||||.++ |.. ++|++....+...+...||+. .+++|||+||++|.+|.+
T Consensus 151 avNKMD~v~-wde------------------~rf~ei~~~v~~l~k~~G~~~----------~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVS-WDE------------------ERFEEIVSEVSKLLKMVGYNP----------KDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccc-cCH------------------HHHHHHHHHHHHHHHHcCCCc----------cCCeEEecccccCCcccc
Confidence 999999986 774 456666777777777888875 468999999999766544
Q ss_pred ---------------hhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCC
Q 036359 498 ---------------KLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHP 553 (657)
Q Consensus 498 ---------------~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~ 553 (657)
.|+ ...||+++|.+++.+.|.|+|..|+|.+|.|++||.|+ +|..
T Consensus 202 ~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~----------- 270 (428)
T COG5256 202 KSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG----------- 270 (428)
T ss_pred cCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc-----------
Confidence 332 24579999999999999999999999999999999999 7765
Q ss_pred CceeEEeeeeeccccccccc---ccEEEecCCCC--CCCCCeEEEcCC
Q 036359 554 MKELRVKGAYQHHKEIKAAQ---GIKITAQGLQD--AIAGTSLYVVGP 596 (657)
Q Consensus 554 ~~e~rVksi~~~~~~v~~a~---gv~i~~~gl~~--~~aG~~l~v~~~ 596 (657)
...+|+|+++||.++..|. .|++.++|+.. +.+|+.+.-..+
T Consensus 271 -~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 271 -VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred -ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 4588999999999999884 48899999865 889998764433
No 11
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.3e-33 Score=312.59 Aligned_cols=240 Identities=23% Similarity=0.291 Sum_probs=192.3
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc-------------------------------ccccccCceeeeccceeeecccccc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPVENIQK 346 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~-------------------------------v~~~~~~GiT~~ig~~~~~~~~~~~ 346 (657)
..|+++||+|||||||+++|+... ...++.+|+|.+++..++.+.
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~---- 83 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT---- 83 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC----
Confidence 349999999999999999997321 012335667766665555543
Q ss_pred hhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCC-------chhHHHHHHHHHhcCCc-eEEE
Q 036359 347 RTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-------KPQTIESLDLLKERSVD-FIIA 418 (657)
Q Consensus 347 ~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~qt~e~l~~l~~~~vP-iIvv 418 (657)
.+.++|||||||.+|..++..+++.+|++|||||+..|. .+||.+|+.++..+|+| +|||
T Consensus 84 ------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~ 151 (447)
T PLN00043 84 ------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICC 151 (447)
T ss_pred ------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEE
Confidence 245999999999999999999999999999999999973 28999999999999997 7899
Q ss_pred eccccccc-CcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhh-
Q 036359 419 LSKADKLY-GWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV- 496 (657)
Q Consensus 419 lNKiDl~~-~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~- 496 (657)
+||||+.. .|. ...|...+.++...|...||+. ..++|||+||++|.+|.
T Consensus 152 vNKmD~~~~~~~------------------~~~~~~i~~ei~~~l~~~g~~~----------~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKYS------------------KARYDEIVKEVSSYLKKVGYNP----------DKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhhh------------------HHHHHHHHHHHHHHHHHcCCCc----------ccceEEEEeccccccccc
Confidence 99999852 221 3456666677777888888764 35799999999988753
Q ss_pred --------------hhhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCC
Q 036359 497 --------------KKLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHP 553 (657)
Q Consensus 497 --------------e~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~ 553 (657)
+.|. ...||+++|.++|.++|.|+|+.|+|.+|+|++||.|+ +|..
T Consensus 204 ~~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~----------- 272 (447)
T PLN00043 204 RSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG----------- 272 (447)
T ss_pred cccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC-----------
Confidence 3222 13479999999999999999999999999999999999 7753
Q ss_pred CceeEEeeeeeccccccccc---ccEEEecCCC--CCCCCCeEEE
Q 036359 554 MKELRVKGAYQHHKEIKAAQ---GIKITAQGLQ--DAIAGTSLYV 593 (657)
Q Consensus 554 ~~e~rVksi~~~~~~v~~a~---gv~i~~~gl~--~~~aG~~l~v 593 (657)
...+|+||++|+..+..|. .+.|.+.|++ ++..|+.|+-
T Consensus 273 -~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 273 -LTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred -CEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 3579999999999998774 4899999985 4788888764
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.8e-33 Score=311.65 Aligned_cols=241 Identities=22% Similarity=0.300 Sum_probs=193.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc-------------------------------ccccccCceeeeccceeeecccccc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPVENIQK 346 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~-------------------------------v~~~~~~GiT~~ig~~~~~~~~~~~ 346 (657)
.+|+++||+|||||||+++|+... ...++.+|+|.+++..++.+.
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~---- 83 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence 449999999999999999997411 122345677777766555543
Q ss_pred hhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCC-------chhHHHHHHHHHhcCCc-eEEE
Q 036359 347 RTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-------KPQTIESLDLLKERSVD-FIIA 418 (657)
Q Consensus 347 ~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~qt~e~l~~l~~~~vP-iIvv 418 (657)
.+.++|||||||.+|...+.++++.+|++|||||+..|+ .+||.+||.++..+|+| +|||
T Consensus 84 ------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~ 151 (446)
T PTZ00141 84 ------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVC 151 (446)
T ss_pred ------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEE
Confidence 245999999999999999999999999999999999997 48999999999999998 7899
Q ss_pred eccccccc-CcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhh-
Q 036359 419 LSKADKLY-GWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV- 496 (657)
Q Consensus 419 lNKiDl~~-~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~- 496 (657)
+||||+.. +|. ...|......+...|...|++. ..++|||+||++|.+|.
T Consensus 152 vNKmD~~~~~~~------------------~~~~~~i~~~i~~~l~~~g~~~----------~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYS------------------QERYDEIKKEVSAYLKKVGYNP----------EKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhh------------------HHHHHHHHHHHHHHHHhcCCCc----------ccceEEEeecccCCCccc
Confidence 99999632 333 2345555667777777777753 35899999999988764
Q ss_pred --------------hhhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCC
Q 036359 497 --------------KKLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHP 553 (657)
Q Consensus 497 --------------e~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~ 553 (657)
+.|. ...||+++|.++|.++|.|+|++|+|.+|+|++||.|+ +|..
T Consensus 204 ~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~----------- 272 (446)
T PTZ00141 204 KSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG----------- 272 (446)
T ss_pred CCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCC-----------
Confidence 2222 23479999999999999999999999999999999999 6643
Q ss_pred CceeEEeeeeeccccccccc---ccEEEecCCCC--CCCCCeEEEc
Q 036359 554 MKELRVKGAYQHHKEIKAAQ---GIKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 554 ~~e~rVksi~~~~~~v~~a~---gv~i~~~gl~~--~~aG~~l~v~ 594 (657)
...+|++|++|+..+..|. .|.|.+.|++. +..|+.|+-.
T Consensus 273 -~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 273 -VTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred -cEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 3589999999999998773 48899999864 6889888753
No 13
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-33 Score=282.62 Aligned_cols=240 Identities=24% Similarity=0.321 Sum_probs=189.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCc----------------ccccccCceeeeccceeeecccccchhhccccccccCCCcE
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN----------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGL 362 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~----------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l 362 (657)
+|+.|||+|||||||..+|+... .+..+++|||++.....+... ..++
T Consensus 14 NigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~----------------~rhy 77 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA----------------NRHY 77 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC----------------CceE
Confidence 49999999999999999997422 344567888865544333332 2469
Q ss_pred EEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHHH
Q 036359 363 LVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKALE 441 (657)
Q Consensus 363 ~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L~ 441 (657)
.++|||||.+|..+++.|+.++|++||||++.+|.+|||++|+.+.+..|+| +|+++||+|+++ ...+...
T Consensus 78 ahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd------d~ellel-- 149 (394)
T COG0050 78 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD------DEELLEL-- 149 (394)
T ss_pred EeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC------cHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999999 899999999984 2222211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchh--------hhhhhhhh---c---------c
Q 036359 442 QQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIR--------HKTMVKKL---A---------F 501 (657)
Q Consensus 442 ~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t--------~~~L~e~l---~---------~ 501 (657)
--.++...|..+||. +.++||+-.||+. ...+.+++ + .
T Consensus 150 ------------VemEvreLLs~y~f~----------gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~ 207 (394)
T COG0050 150 ------------VEMEVRELLSEYGFP----------GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDI 207 (394)
T ss_pred ------------HHHHHHHHHHHcCCC----------CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcc
Confidence 124677888888886 4679999999997 11222222 1 2
Q ss_pred ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE--eccccchhhccCCCCCceeEEeeeeeccccccccc---ccE
Q 036359 502 RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV--EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIK 576 (657)
Q Consensus 502 ~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~--gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~ 576 (657)
..||.++|.++|.+.|+|||++|+|.+|+|++||.+. |-- +.+...|.+++|+++.+..+. |++
T Consensus 208 dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~-----------~~~kttvtgvemfrk~ld~~~AGdnvg 276 (394)
T COG0050 208 DKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIK-----------ETQKTTVTGVEMFRKLLDEGQAGDNVG 276 (394)
T ss_pred cccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEeccc-----------ccceeEEEhHHHHHHHHhccccCCCcc
Confidence 4579999999999999999999999999999999987 311 224577999999999888664 799
Q ss_pred EEecCCCC--CCCCCeEEEcCCC
Q 036359 577 ITAQGLQD--AIAGTSLYVVGPN 597 (657)
Q Consensus 577 i~~~gl~~--~~aG~~l~v~~~~ 597 (657)
+.++|+.. +..|+.|. .|+
T Consensus 277 ~llRg~~r~~veRGqvLa--kpg 297 (394)
T COG0050 277 VLLRGVKREDVERGQVLA--KPG 297 (394)
T ss_pred eEEEeccccceecceEee--cCC
Confidence 99999965 56666554 554
No 14
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=6.4e-33 Score=317.27 Aligned_cols=237 Identities=28% Similarity=0.396 Sum_probs=188.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+|+++||+|||||||+++|++.+ +..+..+|+|+.+++.++.... ...++|||||||++|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 379999999999999999999744 4455668999998877665421 1238999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKM 453 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~ 453 (657)
.++..++..+|++|||||+++|+++||.+|+.++..+++| +|||+||||+.. . ..+..
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~------~---------------~~~~~ 124 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD------E---------------ARIAE 124 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC------H---------------HHHHH
Confidence 9899999999999999999999999999999999999999 579999999963 0 11112
Q ss_pred HHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc-----------cccccceeEEEEEeecCceeEE
Q 036359 454 RLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-----------FRNEVQCTILEVKVCEGYGTTI 522 (657)
Q Consensus 454 ~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-----------~~~~~~~~Vlev~~~~g~GtVv 522 (657)
....+...|...|+ ..++|||+||++|.++.+++. ...+|+++|.++|.++|.|||+
T Consensus 125 v~~ei~~~l~~~~~------------~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~~~~~~~~rl~Id~vf~v~G~GtVv 192 (614)
T PRK10512 125 VRRQVKAVLREYGF------------AEAKLFVTAATEGRGIDALREHLLQLPEREHAAQHRFRLAIDRAFTVKGAGLVV 192 (614)
T ss_pred HHHHHHHHHHhcCC------------CCCcEEEEeCCCCCCCHHHHHHHHHhhccccCcCCCceEEEEEEeccCCCeEEE
Confidence 22334444444443 246899999999988765432 2357999999999999999999
Q ss_pred EEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cc--cEEEecC-CC--CCCCCCeEEEc
Q 036359 523 DVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QG--IKITAQG-LQ--DAIAGTSLYVV 594 (657)
Q Consensus 523 ~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~g--v~i~~~g-l~--~~~aG~~l~v~ 594 (657)
+|+|.+|+|++||.|. .|.. ..++|+||++|+..+..| +| +.|.+.| ++ .+..|+.|+..
T Consensus 193 tGtv~sG~l~~Gd~v~i~p~~------------~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~ 259 (614)
T PRK10512 193 TGTALSGEVKVGDTLWLTGVN------------KPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLAD 259 (614)
T ss_pred EEEEecceEecCCEEEEcCCC------------CcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCC
Confidence 9999999999999998 5532 357999999999999877 34 7777787 65 47889988743
No 15
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=9.7e-33 Score=314.76 Aligned_cols=237 Identities=29% Similarity=0.413 Sum_probs=189.1
Q ss_pred eEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+|+++||+|||||||+++|++.. +.....+|+|+++++.++.+.. ..++|||||||..|..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~~ 65 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFIS 65 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHHH
Confidence 69999999999999999999743 4445568999999887776543 2489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
++..++..+|++|||||+++|+++||.+|+.++..+++| +|||+||||+.. .. .+...
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~------~~---------------~~~~~ 124 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN------EE---------------EIKRT 124 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC------HH---------------HHHHH
Confidence 999999999999999999999999999999999999999 999999999963 10 11111
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc-------------cccccceeEEEEEeecCceeE
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-------------FRNEVQCTILEVKVCEGYGTT 521 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-------------~~~~~~~~Vlev~~~~g~GtV 521 (657)
...+...+...++. ..++|||+||++|.++.+.+. ...+|+++|.++|.++|.|+|
T Consensus 125 ~~ei~~~l~~~~~~-----------~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtV 193 (581)
T TIGR00475 125 EMFMKQILNSYIFL-----------KNAKIFKTSAKTGQGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTV 193 (581)
T ss_pred HHHHHHHHHHhCCC-----------CCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEE
Confidence 12233334433332 247899999999888755321 145799999999999999999
Q ss_pred EEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEecCCCC--CCCCCeEEEcC
Q 036359 522 IDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQGLQD--AIAGTSLYVVG 595 (657)
Q Consensus 522 v~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~gl~~--~~aG~~l~v~~ 595 (657)
++|+|.+|+|++||.|. +|.. ..++|++|++|+..+..|. .|.|.+.|++. +..| +++..
T Consensus 194 v~G~v~~G~i~~Gd~l~i~P~~------------~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG--~~~~~ 259 (581)
T TIGR00475 194 VTGTAFSGEVKVGDNLRLLPIN------------HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRG--LLILT 259 (581)
T ss_pred EEEEEecceEecCCEEEECCCC------------ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCc--eEEcC
Confidence 99999999999999999 7753 4589999999999998773 48888889875 5677 44444
Q ss_pred CC
Q 036359 596 PN 597 (657)
Q Consensus 596 ~~ 597 (657)
+.
T Consensus 260 ~~ 261 (581)
T TIGR00475 260 PE 261 (581)
T ss_pred CC
Confidence 43
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.5e-32 Score=300.67 Aligned_cols=242 Identities=23% Similarity=0.303 Sum_probs=185.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc----------------cccccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV----------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v----------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
+.+|+|+||+|||||||+++|++... ..+..+|+|.+++...+... ..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------~~ 75 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------KR 75 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC----------------Cc
Confidence 34499999999999999999986321 12335777776654444322 23
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
.++|||||||.+|...+.+++..+|++|||||+.+|+.+||.+||.++..+|+| +|||+||||++. ...
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~---- 145 (394)
T PRK12736 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DEE---- 145 (394)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHH----
Confidence 589999999999999999999999999999999999999999999999999999 789999999962 111
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhh-----------hhhhhhh----c----
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRH-----------KTMVKKL----A---- 500 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~-----------~~L~e~l----~---- 500 (657)
.+......+...|...|+.. ..++|||+||+++ ..|++.| +
T Consensus 146 ----------~~~~i~~~i~~~l~~~~~~~----------~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~ 205 (394)
T PRK12736 146 ----------LLELVEMEVRELLSEYDFPG----------DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER 205 (394)
T ss_pred ----------HHHHHHHHHHHHHHHhCCCc----------CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCC
Confidence 11111234555566666542 3579999999996 2333332 1
Q ss_pred -cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc-c--c
Q 036359 501 -FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G--I 575 (657)
Q Consensus 501 -~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g--v 575 (657)
...||+++|.++|.++|.|+|++|+|.+|+|++||.|+ .|.. +....+|++|++|+..+..|. | +
T Consensus 206 ~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~----------~~~~~~V~sI~~~~~~~~~a~aGd~v 275 (394)
T PRK12736 206 DTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIK----------ETQKTVVTGVEMFRKLLDEGQAGDNV 275 (394)
T ss_pred CCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCC----------CCeEEEEEEEEECCEEccEECCCCEE
Confidence 13579999999999999999999999999999999998 4431 235689999999999998774 4 7
Q ss_pred EEEecCCC--CCCCCCeEEEc
Q 036359 576 KITAQGLQ--DAIAGTSLYVV 594 (657)
Q Consensus 576 ~i~~~gl~--~~~aG~~l~v~ 594 (657)
.|++.|++ .+..|+.|+..
T Consensus 276 ~l~l~~i~~~~i~~G~vl~~~ 296 (394)
T PRK12736 276 GVLLRGVDRDEVERGQVLAKP 296 (394)
T ss_pred EEEECCCcHHhCCcceEEecC
Confidence 77889986 46889988653
No 17
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-33 Score=287.28 Aligned_cols=244 Identities=27% Similarity=0.335 Sum_probs=191.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC----------------cccccccCceeeeccceeeecccccchhhccccccccCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT----------------NVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKV 359 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~----------------~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 359 (657)
.+.+|+.|||+|||||||..+|+.. +.+.+.++|||++ ..++.++.- .
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn--~aHveYeTa--------------~ 116 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITIN--AAHVEYETA--------------K 116 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEe--eeeeeeecc--------------c
Confidence 3445999999999999999999732 1234567899854 455655432 2
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHH
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
.+|--+|||||.+|..+++.|..+.|++||||.+++|.+|||++||.+++..|++ +||++||.|++. .....+
T Consensus 117 RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~------d~e~le 190 (449)
T KOG0460|consen 117 RHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD------DPEMLE 190 (449)
T ss_pred cccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC------CHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999 899999999984 222111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchh---------h-hhhhhhh---c-----
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIR---------H-KTMVKKL---A----- 500 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t---------~-~~L~e~l---~----- 500 (657)
.+ --++...|.++||+ |.++|+|..||++ | +.+..+| +
T Consensus 191 LV--------------EmE~RElLse~gf~----------Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 191 LV--------------EMEIRELLSEFGFD----------GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred HH--------------HHHHHHHHHHcCCC----------CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 11 13567788889987 4789999999998 1 1122222 1
Q ss_pred ----cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE--eccccchhhccCCCCCceeEEeeeeeccccccccc-
Q 036359 501 ----FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV--EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ- 573 (657)
Q Consensus 501 ----~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~--gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~- 573 (657)
...||.++|.++|.++|+|||++|+|.+|+|+.||.+- |-.. .....|.+|+|+++.+..|+
T Consensus 247 P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~-----------~lkttvtgiemF~K~ld~a~A 315 (449)
T KOG0460|consen 247 PERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNK-----------TLKTTVTGIEMFRKSLDEAQA 315 (449)
T ss_pred cccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCc-----------ceeeEeehHHHHHHHHHhccc
Confidence 24579999999999999999999999999999999987 4322 23467999999999999885
Q ss_pred --ccEEEecCCCC--CCCCCeEEEcCCCc
Q 036359 574 --GIKITAQGLQD--AIAGTSLYVVGPND 598 (657)
Q Consensus 574 --gv~i~~~gl~~--~~aG~~l~v~~~~~ 598 (657)
++++.++||.. +..|+.| +.|+.
T Consensus 316 GDn~G~LlRGik~~dvkRGmvl--~~pGs 342 (449)
T KOG0460|consen 316 GDNLGALLRGIKREDVKRGMVL--AKPGS 342 (449)
T ss_pred ccceehhhhcCCHHHHhcccEE--ecCCc
Confidence 58999999975 4566554 45654
No 18
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.9e-32 Score=304.70 Aligned_cols=242 Identities=23% Similarity=0.274 Sum_probs=190.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc----------------ccccccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN----------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~----------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
+.+|+++||+|||||||+++|++.. ...++.+|+|.+.+..++.+.. .
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~----------------~ 144 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN----------------R 144 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC----------------c
Confidence 3449999999999999999998521 1234567888877766665432 3
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
.++|||||||.+|...+.+++..+|++|||||+..|+.+||.+||.++..+|+| +|||+||||++. ..
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~----- 213 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DE----- 213 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------HH-----
Confidence 489999999999999999999999999999999999999999999999999999 789999999963 11
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhh---------------------hhhh
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKT---------------------MVKK 498 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~---------------------L~e~ 498 (657)
+.++....++...|...||+. .+++|||+||+++.+ |++.
T Consensus 214 ---------~~~~~i~~~i~~~l~~~g~~~----------~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~ 274 (478)
T PLN03126 214 ---------ELLELVELEVRELLSSYEFPG----------DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDA 274 (478)
T ss_pred ---------HHHHHHHHHHHHHHHhcCCCc----------CcceEEEEEccccccccccccccccCCCchhhhHHHHHHH
Confidence 112222335666677777642 468999999988632 2332
Q ss_pred hc---------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccc
Q 036359 499 LA---------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKE 568 (657)
Q Consensus 499 l~---------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~ 568 (657)
|. ...||+++|.++|.++|.|+|++|+|.+|+|++||.|+ +|.. .+...+|++|++|+..
T Consensus 275 l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~----------~~~~~~VksI~~~~~~ 344 (478)
T PLN03126 275 VDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLR----------ETRSTTVTGVEMFQKI 344 (478)
T ss_pred HHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCC----------CceEEEEEEEEECCeE
Confidence 21 13479999999999999999999999999999999999 6642 1246899999999999
Q ss_pred ccccc---ccEEEecCCCC--CCCCCeEEEc
Q 036359 569 IKAAQ---GIKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 569 v~~a~---gv~i~~~gl~~--~~aG~~l~v~ 594 (657)
+..|. .+.|++.|++. +..|+.|+-.
T Consensus 345 v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 345 LDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred CCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 98774 48888899865 6889888754
No 19
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.8e-32 Score=300.80 Aligned_cols=245 Identities=22% Similarity=0.300 Sum_probs=184.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC----------------cccccccCceeeeccceeeecccccchhhccccccccCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT----------------NVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKV 359 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~----------------~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 359 (657)
.+.+|+++||+|||||||+++|++. ....++.+|+|.+.+...+.+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~---------------- 123 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK---------------- 123 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC----------------
Confidence 3455999999999999999999732 11234458888887665555432
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHH
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
..++|||||||.+|...+.+++..+|++|||||+..|+.+||.+|+.++..+++| +|||+||||++. ...+
T Consensus 124 ~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~~~-- 195 (447)
T PLN03127 124 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------DEEL-- 195 (447)
T ss_pred eEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------HHHH--
Confidence 3489999999999998888899999999999999999999999999999999999 578999999963 0000
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchh---hh----------hhhhhh----c-
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIR---HK----------TMVKKL----A- 500 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t---~~----------~L~e~l----~- 500 (657)
+......+...|...+++ +..++|||+||++ +. .|++.| +
T Consensus 196 ------------~~~i~~~i~~~l~~~~~~----------~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 196 ------------LELVEMELRELLSFYKFP----------GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred ------------HHHHHHHHHHHHHHhCCC----------CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 111112333444444443 2468999999975 22 233322 2
Q ss_pred ----cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc--
Q 036359 501 ----FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-- 573 (657)
Q Consensus 501 ----~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-- 573 (657)
...+|+++|.++|.++|.|+|++|+|.+|+|++||.|+ .|.. |..+...+|+||++|+..+..|.
T Consensus 254 p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~--------~~g~~~~~VksI~~~~~~v~~a~aG 325 (447)
T PLN03127 254 PVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLR--------PGGPLKTTVTGVEMFKKILDQGQAG 325 (447)
T ss_pred CCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccC--------CCCcEEEEEEEEEEECcEeCEEcCC
Confidence 13479999999999999999999999999999999997 3321 11135689999999999988774
Q ss_pred -ccEEEecCCCC--CCCCCeEEEc
Q 036359 574 -GIKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 574 -gv~i~~~gl~~--~~aG~~l~v~ 594 (657)
.+.|.+.|++. +..|+.|+-.
T Consensus 326 d~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 326 DNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred CEEEEEeCCCCHHHCCCccEEecC
Confidence 48888999864 7889988754
No 20
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=7.5e-32 Score=295.32 Aligned_cols=242 Identities=24% Similarity=0.305 Sum_probs=185.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc----------------ccccccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN----------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~----------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
+..|+++||+|||||||+++|++.. ...+..+|+|.+++...+.+. ..
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----------------~~ 75 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----------------NR 75 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------Cc
Confidence 3449999999999999999998621 122345778877655444332 23
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceE-EEecccccccCcccCCCccHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFI-IALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiI-vvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
.++|||||||.+|...+.+++..+|++|||||+..|+.+||.+++.++...++|.| ||+||||++. ...
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~~---- 145 (396)
T PRK12735 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEE---- 145 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hHH----
Confidence 48999999999999888899999999999999999999999999999999999955 6899999962 000
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhh-------------hhhhhhc------
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHK-------------TMVKKLA------ 500 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~-------------~L~e~l~------ 500 (657)
.+.....++...|...|+.. ..++|+|+||+++. .|++.|.
T Consensus 146 ----------~~~~~~~ei~~~l~~~~~~~----------~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p 205 (396)
T PRK12735 146 ----------LLELVEMEVRELLSKYDFPG----------DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP 205 (396)
T ss_pred ----------HHHHHHHHHHHHHHHcCCCc----------CceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC
Confidence 11111234445555555431 35899999999962 3333332
Q ss_pred ---cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc-c-
Q 036359 501 ---FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G- 574 (657)
Q Consensus 501 ---~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g- 574 (657)
...+|+++|.++|.++|.|+|++|+|.+|+|++||.|+ +|.. .+..++|++|++|+..+..|. |
T Consensus 206 ~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~----------~~~~~~VksI~~~~~~v~~a~aGd 275 (396)
T PRK12735 206 ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIK----------ETQKTTVTGVEMFRKLLDEGQAGD 275 (396)
T ss_pred CccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCC----------CCeEEEEEEEEECCeEeCEECCCC
Confidence 12469999999999999999999999999999999998 5532 235689999999999998773 4
Q ss_pred -cEEEecCCCC--CCCCCeEEEc
Q 036359 575 -IKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 575 -v~i~~~gl~~--~~aG~~l~v~ 594 (657)
+.|++.|++. +..|+.|+-.
T Consensus 276 ~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 276 NVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred EEEEEeCCCcHHHCCcceEEEcC
Confidence 7888899854 7889988754
No 21
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.1e-31 Score=295.10 Aligned_cols=242 Identities=26% Similarity=0.306 Sum_probs=186.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc----------------ccccccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN----------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~----------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
+..|+|+||+|||||||+++|++.. ...++.+|+|.+.....+.+. ..
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------~~ 75 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------NR 75 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------------Ce
Confidence 3449999999999999999998642 123345788877765555432 23
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
.++|||||||.+|...+.+++..+|++|||||+..|+.+||.+++.++..+++| +|+|+||||++. ..
T Consensus 76 ~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~------~~----- 144 (409)
T CHL00071 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD------DE----- 144 (409)
T ss_pred EEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC------HH-----
Confidence 489999999999998889999999999999999999999999999999999999 789999999963 00
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhh---------------------hhhh
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKT---------------------MVKK 498 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~---------------------L~e~ 498 (657)
..+......+...|...|++. ..++|+|+||++|.+ |++.
T Consensus 145 ---------~~~~~~~~~l~~~l~~~~~~~----------~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~ 205 (409)
T CHL00071 145 ---------ELLELVELEVRELLSKYDFPG----------DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDA 205 (409)
T ss_pred ---------HHHHHHHHHHHHHHHHhCCCC----------CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHH
Confidence 011222235556666666542 358999999998742 2222
Q ss_pred hc---------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccc
Q 036359 499 LA---------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKE 568 (657)
Q Consensus 499 l~---------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~ 568 (657)
|. ...||+++|.++|.++|.|+|++|+|.+|+|++||.|+ .|.. ....++|++|++|+..
T Consensus 206 l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~----------~~~~~~VksI~~~~~~ 275 (409)
T CHL00071 206 VDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLR----------ETKTTTVTGLEMFQKT 275 (409)
T ss_pred HHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCC----------CCcEEEEEEEEEcCcC
Confidence 21 13469999999999999999999999999999999997 3321 1245899999999999
Q ss_pred cccc-cc--cEEEecCCC--CCCCCCeEEEc
Q 036359 569 IKAA-QG--IKITAQGLQ--DAIAGTSLYVV 594 (657)
Q Consensus 569 v~~a-~g--v~i~~~gl~--~~~aG~~l~v~ 594 (657)
+..| +| |.|++.|++ ++..|+.|+-.
T Consensus 276 v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 276 LDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred CCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 8877 35 788888886 46888888644
No 22
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.98 E-value=9e-32 Score=294.68 Aligned_cols=242 Identities=24% Similarity=0.319 Sum_probs=183.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc----------------ccccccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN----------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~----------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
+.+|+|+||+|||||||+++|++.. ...+..+|+|.++....+... ..
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------~~ 75 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------NR 75 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----------------CE
Confidence 4459999999999999999997431 123345788877654443322 23
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceE-EEecccccccCcccCCCccHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFI-IALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiI-vvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
.++|||||||.+|...+.+++..+|++|||||+.+|+.+||.+++.++..+++|.| +|+||||+.. ..
T Consensus 76 ~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~------~~----- 144 (394)
T TIGR00485 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DE----- 144 (394)
T ss_pred EEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC------HH-----
Confidence 48999999999999888999999999999999999999999999999999999955 7899999963 00
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhh-----------hhhhhhc--------
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHK-----------TMVKKLA-------- 500 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~-----------~L~e~l~-------- 500 (657)
..+.....++...|...|+.. .++++||+||+++. .|++.|.
T Consensus 145 ---------~~~~~~~~~i~~~l~~~~~~~----------~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~ 205 (394)
T TIGR00485 145 ---------ELLELVEMEVRELLSEYDFPG----------DDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER 205 (394)
T ss_pred ---------HHHHHHHHHHHHHHHhcCCCc----------cCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC
Confidence 011111234555566555432 35899999999753 2333322
Q ss_pred -cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc-c--c
Q 036359 501 -FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G--I 575 (657)
Q Consensus 501 -~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g--v 575 (657)
...||+++|.++|.++|.|+|++|+|.+|+|++||.|+ .|.. .+...+|++|++|+.++..|. | +
T Consensus 206 ~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~----------~~~~~~VksI~~~~~~~~~a~aGd~v 275 (394)
T TIGR00485 206 ETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK----------DTRKTTVTGVEMFRKELDEGRAGDNV 275 (394)
T ss_pred CCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCC----------CCcEEEEEEEEECCeEEEEECCCCEE
Confidence 13469999999999999999999999999999999998 4421 235689999999999988774 4 7
Q ss_pred EEEecCCCC--CCCCCeEEEc
Q 036359 576 KITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 576 ~i~~~gl~~--~~aG~~l~v~ 594 (657)
.|++.|++. +..|+.|+-.
T Consensus 276 ~l~l~~i~~~~i~rG~vl~~~ 296 (394)
T TIGR00485 276 GLLLRGIKREEIERGMVLAKP 296 (394)
T ss_pred EEEeCCccHHHCCccEEEecC
Confidence 778889854 7889988643
No 23
>PRK00049 elongation factor Tu; Reviewed
Probab=99.98 E-value=1.7e-31 Score=292.35 Aligned_cols=242 Identities=24% Similarity=0.313 Sum_probs=186.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc----------------cccccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV----------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v----------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
+.+|+|+||+|||||||+++|++... ..+..+|+|.+.+...+.+. ..
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~ 75 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------KR 75 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------Ce
Confidence 34499999999999999999986321 22346788877665444332 23
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceE-EEecccccccCcccCCCccHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFI-IALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiI-vvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
.++|||||||.+|...+.+++..+|++|||||+..|+.+||.+++.++..+++|+| ||+||+|++. ..
T Consensus 76 ~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~----- 144 (396)
T PRK00049 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DE----- 144 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hH-----
Confidence 48999999999999888899999999999999999999999999999999999965 6899999962 00
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhh-------------hhhhhhc------
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHK-------------TMVKKLA------ 500 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~-------------~L~e~l~------ 500 (657)
..+......+...|...|+.. ..++|+|+||+++. .|++.|.
T Consensus 145 ---------~~~~~~~~~i~~~l~~~~~~~----------~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p 205 (396)
T PRK00049 145 ---------ELLELVEMEVRELLSKYDFPG----------DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP 205 (396)
T ss_pred ---------HHHHHHHHHHHHHHHhcCCCc----------cCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC
Confidence 011222234555666666532 45899999999853 3444332
Q ss_pred ---cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc-c-
Q 036359 501 ---FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G- 574 (657)
Q Consensus 501 ---~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g- 574 (657)
...||+++|.++|.++|.|+|++|+|.+|+|++||.|+ .|.. ++...+|+||++|+..+..|. |
T Consensus 206 ~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~----------~~~~~~VksI~~~~~~~~~a~~Gd 275 (396)
T PRK00049 206 ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIR----------DTQKTTVTGVEMFRKLLDEGQAGD 275 (396)
T ss_pred CCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecC----------CCceEEEEEEEECCcEeCEEcCCC
Confidence 13479999999999999999999999999999999998 5431 245689999999999998773 4
Q ss_pred -cEEEecCCCC--CCCCCeEEEc
Q 036359 575 -IKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 575 -v~i~~~gl~~--~~aG~~l~v~ 594 (657)
+.++++|++. +..|+.|+-.
T Consensus 276 ~v~l~l~~i~~~~i~~G~vl~~~ 298 (396)
T PRK00049 276 NVGALLRGIKREDVERGQVLAKP 298 (396)
T ss_pred EEEEEeCCCCHHHCCcceEEecC
Confidence 7888899854 6889888753
No 24
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=2.6e-31 Score=293.91 Aligned_cols=241 Identities=27% Similarity=0.384 Sum_probs=186.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc--c-----------------------------cccccCceeeeccceeeeccccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPVENIQ 345 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~--v-----------------------------~~~~~~GiT~~ig~~~~~~~~~~ 345 (657)
+..|+|+||+|||||||+++|+... + ..++.+|+|.+++...+.+.
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~--- 82 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD--- 82 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC---
Confidence 3459999999999999999998432 1 11234677776666555543
Q ss_pred chhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccC--CCchhHHHHHHHHHhcCCc-eEEEeccc
Q 036359 346 KRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD--GIKPQTIESLDLLKERSVD-FIIALSKA 422 (657)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~--g~~~qt~e~l~~l~~~~vP-iIvvlNKi 422 (657)
.+.++|||||||.+|...+..++..+|++|||||+++ ++.+++.+++.++..+++| +|||+||+
T Consensus 83 -------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 83 -------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred -------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 2459999999999998888888999999999999999 9999999999999999975 99999999
Q ss_pred ccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh-----
Q 036359 423 DKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK----- 497 (657)
Q Consensus 423 Dl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e----- 497 (657)
|+.. |.. ..|......+...+...|+.. ..++|||+||++|.++.+
T Consensus 150 Dl~~-~~~------------------~~~~~~~~~i~~~l~~~g~~~----------~~~~ii~iSA~~g~gi~~~~~~~ 200 (425)
T PRK12317 150 DAVN-YDE------------------KRYEEVKEEVSKLLKMVGYKP----------DDIPFIPVSAFEGDNVVKKSENM 200 (425)
T ss_pred cccc-ccH------------------HHHHHHHHHHHHHHHhhCCCc----------CcceEEEeecccCCCccccccCC
Confidence 9963 211 112223344555555556542 247899999999777543
Q ss_pred ----------hhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeE
Q 036359 498 ----------KLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELR 558 (657)
Q Consensus 498 ----------~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~r 558 (657)
.|. ...||+++|.++|.++|.|+|++|+|.+|+|++||.|+ +|.. ...+
T Consensus 201 ~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~------------~~~~ 268 (425)
T PRK12317 201 PWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAG------------VVGE 268 (425)
T ss_pred CcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCC------------CeEE
Confidence 232 13579999999999999999999999999999999999 7753 3589
Q ss_pred Eeeeeeccccccccc---ccEEEecCCCC--CCCCCeEEEc
Q 036359 559 VKGAYQHHKEIKAAQ---GIKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 559 Vksi~~~~~~v~~a~---gv~i~~~gl~~--~~aG~~l~v~ 594 (657)
|++|++|+..+..|. .|.|.+.|++. +..|+.|+..
T Consensus 269 VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 269 VKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred EEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 999999999988773 48888899864 6889987643
No 25
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.97 E-value=4.6e-31 Score=291.90 Aligned_cols=265 Identities=20% Similarity=0.270 Sum_probs=188.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeeccc---ccchhh--ccccc-----------c
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVEN---IQKRTE--KLNAD-----------A 355 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~---~~~~~~--~~~~~-----------~ 355 (657)
..+.+|+++||+|||||||+.+|++.. +..+..+|||+.+|+.++.+.. .+.... .+..+ .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 345669999999999999999999865 4566789999999988663210 000000 00000 0
Q ss_pred -ccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-CchhHHHHHHHHHhcCCc-eEEEecccccccCcccCC
Q 036359 356 -KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-IKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCK 432 (657)
Q Consensus 356 -~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~ 432 (657)
......++|||||||.+|...+..++..+|++|||||+.+| +++||.+||..+..+++| +|||+||||++.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~------ 185 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK------ 185 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC------
Confidence 00123689999999999999999999999999999999996 799999999999999987 899999999963
Q ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc-----------
Q 036359 433 NAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF----------- 501 (657)
Q Consensus 433 ~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~----------- 501 (657)
.. .+...+..+...|... +...++|||+||++|.+|..++.+
T Consensus 186 ~~---------------~~~~~~~ei~~~l~~~------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~ 238 (460)
T PTZ00327 186 EA---------------QAQDQYEEIRNFVKGT------------IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRD 238 (460)
T ss_pred HH---------------HHHHHHHHHHHHHHhh------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCC
Confidence 11 1111223333333321 124579999999998877554321
Q ss_pred -ccccceeEEEEEeecC--------ceeEEEEEEEeeeecCCCEEE-eccccchh--hccCCCCCceeEEeeeeeccccc
Q 036359 502 -RNEVQCTILEVKVCEG--------YGTTIDVVLINGVLHEGDKIV-EPIDTKIQ--ALLTPHPMKELRVKGAYQHHKEI 569 (657)
Q Consensus 502 -~~~~~~~Vlev~~~~g--------~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr--~ll~p~~~~e~rVksi~~~~~~v 569 (657)
..+|+++|.++|.+.| .|+|++|+|.+|+|++||.|. +|...... .=+.+.+ ...+|+||++|+..+
T Consensus 239 ~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~-~~~~VksI~~~~~~v 317 (460)
T PTZ00327 239 LTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRP-IRTRIVSLFAENNEL 317 (460)
T ss_pred CCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCcccccc-ceEEEEEEEECCeEC
Confidence 3468899999998875 799999999999999999999 77531100 0011111 247899999999999
Q ss_pred cccc-c--cEEEec---CCCC--CCCCCeEEE
Q 036359 570 KAAQ-G--IKITAQ---GLQD--AIAGTSLYV 593 (657)
Q Consensus 570 ~~a~-g--v~i~~~---gl~~--~~aG~~l~v 593 (657)
..|. | +.|.+. |+.. +.+|+.|+-
T Consensus 318 ~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~ 349 (460)
T PTZ00327 318 QYAVPGGLIGVGTTIDPTLTRADRLVGQVLGY 349 (460)
T ss_pred CEEcCCCEEEEEeccCCCcchhhcccccEEEc
Confidence 8773 4 556555 5543 568887764
No 26
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=274.49 Aligned_cols=279 Identities=22% Similarity=0.327 Sum_probs=203.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccc--------------cCceeeeccceeeecccccchhhccccc-------
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGE--------------AGGITQQIGATYFPVENIQKRTEKLNAD------- 354 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~--------------~~GiT~~ig~~~~~~~~~~~~~~~~~~~------- 354 (657)
...+|+++||+|||||||+++|+....++|. .+|.|..+++..+-++.-. ...+.++
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk--~~rlknPld~aE~~ 193 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGK--VVRLKNPLDEAEKA 193 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCc--eEeecCcccHHHHh
Confidence 3456899999999999999999987776654 2566666665555544311 1111111
Q ss_pred --cccCCCcEEEEeCCCCCcchhhhhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCccc
Q 036359 355 --AKLKVPGLLVVDTPGHESFTNLRSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKS 430 (657)
Q Consensus 355 --~~~~~~~l~iIDTPGh~~f~~~~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~ 430 (657)
..-...-+.|+||-||+.|...+.+|+ +..|+.+|||.|++|++..|.+||.++..+++|+|||++|||+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~---- 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP---- 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc----
Confidence 001113488999999999998888887 779999999999999999999999999999999999999999974
Q ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhh---------ccccCc-ceeEEeccchhhhhhhhh--
Q 036359 431 CKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYK---------NKEMGK-TFSIVPTSAIRHKTMVKK-- 498 (657)
Q Consensus 431 ~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~---------~~~~~~-~v~iVpvSA~t~~~L~e~-- 498 (657)
...|+..+ .+|...|+..|=.+-..-+ ....+. .+|||.+|++||++|.-+
T Consensus 270 --ddr~~~v~---------------~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 270 --DDRFQGVV---------------EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred --HHHHHHHH---------------HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 33343333 3333333332211100000 001233 789999999998876332
Q ss_pred ----hc------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccc
Q 036359 499 ----LA------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHK 567 (657)
Q Consensus 499 ----l~------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~ 567 (657)
|+ +..+|.++|.++|.+.|+|+|+.|.|.+|+|+.||+++ ||...+ .|++++|+||+|||.
T Consensus 333 ~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G--------~fr~v~vkSIemh~~ 404 (527)
T COG5258 333 FFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDG--------KFREVVVKSIEMHHY 404 (527)
T ss_pred HHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCC--------cEEEEEEEEEEEeeE
Confidence 22 34579999999999999999999999999999999999 997644 889999999999999
Q ss_pred cccccc-c--cEEEecCCCC--CCCCCeEEEcCCCccHHHHHH
Q 036359 568 EIKAAQ-G--IKITAQGLQD--AIAGTSLYVVGPNDDLEDVKK 605 (657)
Q Consensus 568 ~v~~a~-g--v~i~~~gl~~--~~aG~~l~v~~~~~~~~~~~~ 605 (657)
.|.+|. | ++|+++|++. +..|+.|.--.+....+++..
T Consensus 405 rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~~~pkaVref~A 447 (527)
T COG5258 405 RVDSAKAGSIIGIALKGVEKEELERGMVLSAGADPKAVREFDA 447 (527)
T ss_pred EeccccCCcEEEEEecccCHHHHhcceEecCCCCchhhheecc
Confidence 999885 4 8899999987 688887763223344444433
No 27
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.8e-31 Score=279.51 Aligned_cols=230 Identities=30% Similarity=0.434 Sum_probs=189.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+|+.+||++||||||+..+.+.. ......+|+|+++|+++++.... .+.|||+|||++|..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~----------------~~~fIDvpgh~~~i~ 65 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG----------------VMGFIDVPGHPDFIS 65 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC----------------ceEEeeCCCcHHHHH
Confidence 68999999999999999999865 44556789999999999987653 489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.+..++...|+++||||+++|+++||.|||..+..+|++ .|||+||+|++. .+ +....
T Consensus 66 ~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d------~~---------------r~e~~ 124 (447)
T COG3276 66 NLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVD------EA---------------RIEQK 124 (447)
T ss_pred HHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccccc------HH---------------HHHHH
Confidence 999999999999999999999999999999999999999 699999999974 11 11222
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhh-------h-----ccccccceeEEEEEeecCceeEE
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKK-------L-----AFRNEVQCTILEVKVCEGYGTTI 522 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~-------l-----~~~~~~~~~Vlev~~~~g~GtVv 522 (657)
+..|+..+. + .+.++|++|+.+|+++.++ + ....+|+..|..+|.++|.|||+
T Consensus 125 i~~Il~~l~---l------------~~~~i~~~s~~~g~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVV 189 (447)
T COG3276 125 IKQILADLS---L------------ANAKIFKTSAKTGRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVV 189 (447)
T ss_pred HHHHHhhcc---c------------ccccccccccccCCCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEE
Confidence 233333332 1 3578899999998876553 1 23457999999999999999999
Q ss_pred EEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEecCCCC--CCCCCeEE
Q 036359 523 DVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQGLQD--AIAGTSLY 592 (657)
Q Consensus 523 ~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~gl~~--~~aG~~l~ 592 (657)
+|.+.+|++++||.++ .|+. ++++|+|||.|..+++.|. .|.++++|.+. +..|+.|.
T Consensus 190 tGtv~sG~V~v~D~L~l~p~~------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~ 253 (447)
T COG3276 190 TGTVLSGEVKVGDKLYLSPIN------------KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLL 253 (447)
T ss_pred EeEEeeeeEEECCEEEEecCC------------CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEec
Confidence 9999999999999999 7764 6799999999999988773 58888889854 46665544
No 28
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.97 E-value=1e-30 Score=289.27 Aligned_cols=240 Identities=28% Similarity=0.409 Sum_probs=184.3
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc--c-----------------------------cccccCceeeeccceeeecccccc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPVENIQK 346 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~--v-----------------------------~~~~~~GiT~~ig~~~~~~~~~~~ 346 (657)
..|+|+||+|||||||+++|+... + ..++.+|+|.+++...+.+.
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~---- 83 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD---- 83 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC----
Confidence 349999999999999999997421 1 11234566666665555543
Q ss_pred hhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC---CchhHHHHHHHHHhcCC-ceEEEeccc
Q 036359 347 RTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG---IKPQTIESLDLLKERSV-DFIIALSKA 422 (657)
Q Consensus 347 ~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g---~~~qt~e~l~~l~~~~v-PiIvvlNKi 422 (657)
...++|||||||.+|...+..++..+|++|||||++++ ..+++.+++.++..+++ |+|||+||+
T Consensus 84 ------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 84 ------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred ------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 23589999999999998888899999999999999999 88999999988888886 489999999
Q ss_pred ccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhh------
Q 036359 423 DKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV------ 496 (657)
Q Consensus 423 Dl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~------ 496 (657)
|+.. |.. ..|......+...+...|+.. ..++|||+||+++.++.
T Consensus 152 Dl~~-~~~------------------~~~~~~~~ei~~~~~~~g~~~----------~~~~~i~iSA~~g~ni~~~~~~~ 202 (426)
T TIGR00483 152 DSVN-YDE------------------EEFEAIKKEVSNLIKKVGYNP----------DTVPFIPISAWNGDNVIKKSENT 202 (426)
T ss_pred hccC-ccH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEeeccccccccccccCC
Confidence 9962 321 112223344555566556542 35799999999987654
Q ss_pred ---------hhhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeE
Q 036359 497 ---------KKLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELR 558 (657)
Q Consensus 497 ---------e~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~r 558 (657)
+.|. ...||+++|.++|.++|.|+|++|+|.+|+|++||.|+ +|.. ...+
T Consensus 203 ~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~------------~~~~ 270 (426)
T TIGR00483 203 PWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG------------VSGE 270 (426)
T ss_pred ccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCC------------cEEE
Confidence 3332 13479999999999999999999999999999999999 6643 3578
Q ss_pred Eeeeeeccccccccc---ccEEEecCCCC--CCCCCeEEEc
Q 036359 559 VKGAYQHHKEIKAAQ---GIKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 559 Vksi~~~~~~v~~a~---gv~i~~~gl~~--~~aG~~l~v~ 594 (657)
|+||++|+..+..|. .+.|+++|++. +..|+.|+-.
T Consensus 271 VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 271 VKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred EEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 999999999998773 37888899854 6788887643
No 29
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.97 E-value=2e-30 Score=295.41 Aligned_cols=244 Identities=25% Similarity=0.309 Sum_probs=186.7
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCc--cc--------------ccccCceeeeccceeeecccccchhhccccccccC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTN--VQ--------------EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLK 358 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~--v~--------------~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~ 358 (657)
+|| |+|+||+|||||||+++|+... +. .++.+|||.......+.|..
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--------------- 63 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--------------- 63 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC---------------
Confidence 477 9999999999999999998521 11 12346777766666665543
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
+.|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+.. +.+..
T Consensus 64 -~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-------a~~~~ 135 (594)
T TIGR01394 64 -TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-------ARPDE 135 (594)
T ss_pred -EEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-------cCHHH
Confidence 3599999999999999999999999999999999999999999999999999999999999999852 22222
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhh----------hhhhhh-------c-
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHK----------TMVKKL-------A- 500 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~----------~L~e~l-------~- 500 (657)
. +..+...|...|.+.+ .-.+|++++||++|. +|..++ +
T Consensus 136 v---------------~~ei~~l~~~~g~~~e--------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 136 V---------------VDEVFDLFAELGADDE--------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred H---------------HHHHHHHHHhhccccc--------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 2 2334444444443211 124789999999984 343322 2
Q ss_pred ----cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeec----cccccc
Q 036359 501 ----FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKA 571 (657)
Q Consensus 501 ----~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~ 571 (657)
...||++.|+.++.+++.|+++.|+|++|+|+.||.|+ +|..+ .....+|++++.+ +.++..
T Consensus 193 P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~---------~~~~~kV~~i~~~~g~~~~~v~~ 263 (594)
T TIGR01394 193 PKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDG---------TIENGRISKLLGFEGLERVEIDE 263 (594)
T ss_pred CCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCC---------ceeEEEEEEEEEccCCCceECCE
Confidence 13579999999999999999999999999999999998 55321 1234678888864 567776
Q ss_pred c-cccEEEecCCCCCCCCCeEEEcC
Q 036359 572 A-QGIKITAQGLQDAIAGTSLYVVG 595 (657)
Q Consensus 572 a-~gv~i~~~gl~~~~aG~~l~v~~ 595 (657)
| +|-.+++.|++++..|++|+...
T Consensus 264 a~aGDiv~i~gl~~i~~Gdtl~~~~ 288 (594)
T TIGR01394 264 AGAGDIVAVAGLEDINIGETIADPE 288 (594)
T ss_pred ECCCCEEEEeCCcccCCCCEEeCCC
Confidence 6 58778888999999999997543
No 30
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.97 E-value=1.5e-29 Score=277.89 Aligned_cols=237 Identities=23% Similarity=0.346 Sum_probs=175.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCc--c-------------------------------cccccCceeeeccceeeeccccc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN--V-------------------------------QEGEAGGITQQIGATYFPVENIQ 345 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~--v-------------------------------~~~~~~GiT~~ig~~~~~~~~~~ 345 (657)
.|+|+||+|||||||+++|+... + ..++.+|+|.+++..++.+.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 48999999999999999997332 0 11223455555555554443
Q ss_pred chhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEeccccc
Q 036359 346 KRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADK 424 (657)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl 424 (657)
...++|||||||.+|...+..++..+|++|||||+..|+++||.+|+.++..+++| +|||+||||+
T Consensus 79 -------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 -------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred -------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 34599999999999998888899999999999999999999999999999999987 8899999999
Q ss_pred ccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh-------
Q 036359 425 LYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK------- 497 (657)
Q Consensus 425 ~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e------- 497 (657)
+. |.. ..|......+...+...|+ ..++|||+||++|.+|.+
T Consensus 146 ~~-~~~------------------~~~~~i~~~~~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~w 194 (406)
T TIGR02034 146 VD-YDE------------------EVFENIKKDYLAFAEQLGF------------RDVTFIPLSALKGDNVVSRSESMPW 194 (406)
T ss_pred cc-chH------------------HHHHHHHHHHHHHHHHcCC------------CCccEEEeecccCCCCcccccCCCc
Confidence 63 211 0111112233333344443 247899999999877643
Q ss_pred --------hhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEe
Q 036359 498 --------KLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVK 560 (657)
Q Consensus 498 --------~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVk 560 (657)
.|. ...+|+++|..++.....+..+.|+|.+|+|++||.|. +|.. ...+|+
T Consensus 195 y~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~------------~~~~Vk 262 (406)
T TIGR02034 195 YSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSG------------RSSRVA 262 (406)
T ss_pred cchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCC------------cEEEEE
Confidence 222 23468899999876543333368999999999999999 7742 458999
Q ss_pred eeeeccccccccc-c--cEEEecCCCCCCCCCeEEEc
Q 036359 561 GAYQHHKEIKAAQ-G--IKITAQGLQDAIAGTSLYVV 594 (657)
Q Consensus 561 si~~~~~~v~~a~-g--v~i~~~gl~~~~aG~~l~v~ 594 (657)
+|++|+..+..|. | +.+++.+..++..|+.|+..
T Consensus 263 sI~~~~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~ 299 (406)
T TIGR02034 263 RIVTFDGDLEQARAGQAVTLTLDDEIDISRGDLLAAA 299 (406)
T ss_pred EEEECCcccCEeCCCCEEEEEECCccccCCccEEEcC
Confidence 9999999988763 4 77777776678899988744
No 31
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.3e-29 Score=272.07 Aligned_cols=246 Identities=24% Similarity=0.390 Sum_probs=200.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc-------------------------------ccccccCceeeeccceeeecccc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPVENI 344 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~-------------------------------v~~~~~~GiT~~ig~~~~~~~~~ 344 (657)
-+..++|+||+|+|||||+++|+... -..++.+|+|..++.++|....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~- 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS- 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc-
Confidence 45568999999999999999997321 1234568888888888777443
Q ss_pred cchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-------CchhHHHHHHHHHhcCCc-eE
Q 036359 345 QKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------IKPQTIESLDLLKERSVD-FI 416 (657)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-------~~~qt~e~l~~l~~~~vP-iI 416 (657)
+.++|||+|||.+|..+++.|+..+|.+|||||++.| ...||++|..+++.+|+- +|
T Consensus 255 ---------------~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 255 ---------------KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred ---------------eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 3499999999999999999999999999999999975 358999999999999997 99
Q ss_pred EEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhhccccCcceeEEeccchhhhhh
Q 036359 417 IALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQF-KEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTM 495 (657)
Q Consensus 417 vvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L-~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L 495 (657)
|++||||++ +|.. ++|.+....+..+| ...||.. ..+.|||+|+++|.+|
T Consensus 320 vaiNKmD~V-~Wsq------------------~RF~eIk~~l~~fL~~~~gf~e----------s~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 320 VAINKMDLV-SWSQ------------------DRFEEIKNKLSSFLKESCGFKE----------SSVKFIPISGLSGENL 370 (603)
T ss_pred EEeeccccc-CccH------------------HHHHHHHHHHHHHHHHhcCccc----------CCcceEecccccCCcc
Confidence 999999998 5874 56777777888888 6778764 5789999999998776
Q ss_pred hhh------------------h--------ccccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhc
Q 036359 496 VKK------------------L--------AFRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQAL 548 (657)
Q Consensus 496 ~e~------------------l--------~~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~l 548 (657)
... | ++..||+++|.+++..++.|..++|+|.+|.|..||.|+ ||..
T Consensus 371 ~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~------ 444 (603)
T KOG0458|consen 371 IKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR------ 444 (603)
T ss_pred cccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc------
Confidence 442 1 124479999999999999999999999999999999999 7765
Q ss_pred cCCCCCceeEEeeeeecccccccc-cc--cEEEecCCC--CCCCCCeEEEcCCCcc
Q 036359 549 LTPHPMKELRVKGAYQHHKEIKAA-QG--IKITAQGLQ--DAIAGTSLYVVGPNDD 599 (657)
Q Consensus 549 l~p~~~~e~rVksi~~~~~~v~~a-~g--v~i~~~gl~--~~~aG~~l~v~~~~~~ 599 (657)
....|+++.+++.+...| .| |.+.++|+. .+..|++++. .+.-.
T Consensus 445 ------e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~-~~~~~ 493 (603)
T KOG0458|consen 445 ------EDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADS-GPQFP 493 (603)
T ss_pred ------ceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeec-CCCcc
Confidence 457899999998888876 34 777777864 3678888774 34333
No 32
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.96 E-value=5.3e-29 Score=263.94 Aligned_cols=246 Identities=24% Similarity=0.306 Sum_probs=188.4
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCc--cc--------------ccccCceeeeccceeeecccccchhhccccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTN--VQ--------------EGEAGGITQQIGATYFPVENIQKRTEKLNADAK 356 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~--v~--------------~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~ 356 (657)
.++|| |+||.|+|||||||++.|+... |. .++.+|||+-.-.+.+.|.
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~-------------- 66 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN-------------- 66 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC--------------
Confidence 45899 9999999999999999998543 11 1234677765444444443
Q ss_pred cCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccH
Q 036359 357 LKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 357 ~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~ 436 (657)
.+.|+|+|||||.+|.....|.++..|+|||+|||.+|++|||+-.+.-+..+|++.|||+||+|++ ++.+
T Consensus 67 --~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp-------~Arp 137 (603)
T COG1217 67 --GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP-------DARP 137 (603)
T ss_pred --CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC-------CCCH
Confidence 3559999999999999999999999999999999999999999999999999999999999999995 4444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhh----------h-------hhhh
Q 036359 437 KKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKT----------M-------VKKL 499 (657)
Q Consensus 437 ~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~----------L-------~e~l 499 (657)
.. -++.+.+.|.+.|-+.+ .-+||+|..||+.|.. | ++.+
T Consensus 138 ~~---------------Vvd~vfDLf~~L~A~de--------QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 DE---------------VVDEVFDLFVELGATDE--------QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HH---------------HHHHHHHHHHHhCCChh--------hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 33 34567777777776543 2468999999998421 1 2222
Q ss_pred c-----cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-----ec-cccchhhccCCCCCceeEEeeeeecccc
Q 036359 500 A-----FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-----EP-IDTKIQALLTPHPMKELRVKGAYQHHKE 568 (657)
Q Consensus 500 ~-----~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-----gp-~~~~Vr~ll~p~~~~e~rVksi~~~~~~ 568 (657)
+ ...||++.|.-.-....+|.+..|+|.+|++++|+.+. |. ..++|..||....+ .+.+
T Consensus 195 p~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL----------~R~e 264 (603)
T COG1217 195 PAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGL----------ERIE 264 (603)
T ss_pred CCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccce----------eeee
Confidence 2 25579999999989999999999999999999999987 21 12333333333322 2445
Q ss_pred cccc-cccEEEecCCCCCCCCCeEEEcCC
Q 036359 569 IKAA-QGIKITAQGLQDAIAGTSLYVVGP 596 (657)
Q Consensus 569 v~~a-~gv~i~~~gl~~~~aG~~l~v~~~ 596 (657)
+..| .|..+++.||+++..|++|+-...
T Consensus 265 i~eA~AGDIVaiaG~~~~~igdTi~d~~~ 293 (603)
T COG1217 265 IEEAEAGDIVAIAGLEDINIGDTICDPDN 293 (603)
T ss_pred cccccccCEEEEcCcccccccccccCCCC
Confidence 5666 699999999999999998875543
No 33
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.96 E-value=1.4e-28 Score=274.70 Aligned_cols=240 Identities=23% Similarity=0.301 Sum_probs=173.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc--cc-------------------------------ccccCceeeeccceeeeccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN--VQ-------------------------------EGEAGGITQQIGATYFPVEN 343 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~--v~-------------------------------~~~~~GiT~~ig~~~~~~~~ 343 (657)
++.|+|+||+|+|||||+++|+... +. .++.+|+|.+++..++.+
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~-- 104 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST-- 104 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc--
Confidence 4559999999999999999997542 11 111244555544444433
Q ss_pred ccchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEeccc
Q 036359 344 IQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKA 422 (657)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKi 422 (657)
+...++|||||||.+|...+..++..+|++|||||+..|+.+||.+++.++..+++| +|||+|||
T Consensus 105 --------------~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKi 170 (474)
T PRK05124 105 --------------EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKM 170 (474)
T ss_pred --------------CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEee
Confidence 234699999999999988888899999999999999999999999999999999875 88999999
Q ss_pred ccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhh------
Q 036359 423 DKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV------ 496 (657)
Q Consensus 423 Dl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~------ 496 (657)
|++. |.. ..+......+...+...|+. ..++|||+||++|.++.
T Consensus 171 D~~~-~~~------------------~~~~~i~~~l~~~~~~~~~~-----------~~~~iipvSA~~g~ni~~~~~~~ 220 (474)
T PRK05124 171 DLVD-YSE------------------EVFERIREDYLTFAEQLPGN-----------LDIRFVPLSALEGDNVVSQSESM 220 (474)
T ss_pred cccc-chh------------------HHHHHHHHHHHHHHHhcCCC-----------CCceEEEEEeecCCCcccccccc
Confidence 9962 221 01111122232333333321 24789999999977653
Q ss_pred ---------hhhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeE
Q 036359 497 ---------KKLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELR 558 (657)
Q Consensus 497 ---------e~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~r 558 (657)
+.|. ...+|+++|..++........+.|+|.+|+|++||.|+ +|.. ...+
T Consensus 221 ~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~------------~~~~ 288 (474)
T PRK05124 221 PWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSG------------KESN 288 (474)
T ss_pred cccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCC------------ceEE
Confidence 3222 12468999999876433222367999999999999998 7753 3589
Q ss_pred Eeeeeeccccccccc---ccEEEecCCCCCCCCCeEEEc
Q 036359 559 VKGAYQHHKEIKAAQ---GIKITAQGLQDAIAGTSLYVV 594 (657)
Q Consensus 559 Vksi~~~~~~v~~a~---gv~i~~~gl~~~~aG~~l~v~ 594 (657)
|++|++|+..+..|. .|.|++.+..++..|+.|+..
T Consensus 289 VksI~~~~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~ 327 (474)
T PRK05124 289 VARIVTFDGDLEEAFAGEAITLVLEDEIDISRGDLLVAA 327 (474)
T ss_pred EEEEEEcCccccCcCCCCEEEEEeCCccccCCccEEECC
Confidence 999999999988663 477888776678899988754
No 34
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.8e-29 Score=255.72 Aligned_cols=241 Identities=23% Similarity=0.322 Sum_probs=187.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc---------------------------------ccccccCceeeeccceeeeccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN---------------------------------VQEGEAGGITQQIGATYFPVEN 343 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~---------------------------------v~~~~~~GiT~~ig~~~~~~~~ 343 (657)
...++.||+||.||||||++|+... +..++..|||+++.+.||..+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 4458999999999999999998432 1123457899999888888764
Q ss_pred ccchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEeccc
Q 036359 344 IQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKA 422 (657)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKi 422 (657)
..|.|.|||||+.|+.+|..|++-||++||+||+..|+..||+.|.-++..+|++ +|+++|||
T Consensus 86 ----------------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKm 149 (431)
T COG2895 86 ----------------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKM 149 (431)
T ss_pred ----------------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeee
Confidence 3499999999999999999999999999999999999999999999999999999 89999999
Q ss_pred ccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh-----
Q 036359 423 DKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK----- 497 (657)
Q Consensus 423 Dl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e----- 497 (657)
||+. |. +..|+........+....|+. .+.+||+||+.|+|+..
T Consensus 150 DLvd-y~------------------e~~F~~I~~dy~~fa~~L~~~------------~~~~IPiSAl~GDNV~~~s~~m 198 (431)
T COG2895 150 DLVD-YS------------------EEVFEAIVADYLAFAAQLGLK------------DVRFIPISALLGDNVVSKSENM 198 (431)
T ss_pred cccc-cC------------------HHHHHHHHHHHHHHHHHcCCC------------cceEEechhccCCcccccccCC
Confidence 9983 43 345555666666666777764 35899999999666543
Q ss_pred ----------hhcc--------ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeE
Q 036359 498 ----------KLAF--------RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELR 558 (657)
Q Consensus 498 ----------~l~~--------~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~r 558 (657)
.|.. ..+|+++|..|..-..-=.-..|+|.+|++++||.|+ -|.. ++.+
T Consensus 199 pWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG------------~~s~ 266 (431)
T COG2895 199 PWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSG------------KTSR 266 (431)
T ss_pred CcccCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCC------------Ceee
Confidence 3321 2358999988866443334467899999999999988 5543 5678
Q ss_pred Eeeeeecccccccc-cc--cEEEecCCCCCCCCCeEEEcCC
Q 036359 559 VKGAYQHHKEIKAA-QG--IKITAQGLQDAIAGTSLYVVGP 596 (657)
Q Consensus 559 Vksi~~~~~~v~~a-~g--v~i~~~gl~~~~aG~~l~v~~~ 596 (657)
|+.|..+...+..| .| |.+.+..==++..|+.|+..+.
T Consensus 267 V~~Ivt~dg~~~~A~aG~aVtl~L~deidisRGd~i~~~~~ 307 (431)
T COG2895 267 VKRIVTFDGELAQASAGEAVTLVLADEIDISRGDLIVAADA 307 (431)
T ss_pred EEEEeccCCchhhccCCceEEEEEcceeecccCcEEEccCC
Confidence 99998887777766 34 6666555445789998886544
No 35
>PRK10218 GTP-binding protein; Provisional
Probab=99.96 E-value=1.6e-28 Score=279.70 Aligned_cols=245 Identities=22% Similarity=0.247 Sum_probs=183.7
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCc--cc--------------ccccCceeeeccceeeecccccchhhccccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTN--VQ--------------EGEAGGITQQIGATYFPVENIQKRTEKLNADAK 356 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~--v~--------------~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~ 356 (657)
.++|| |+|+||+|||||||+++|+... +. ....+|+|.......+.+..
T Consensus 3 ~~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~------------- 67 (607)
T PRK10218 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND------------- 67 (607)
T ss_pred CCceE--EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC-------------
Confidence 35788 9999999999999999998621 21 12345666655555555432
Q ss_pred cCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccH
Q 036359 357 LKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 357 ~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~ 436 (657)
+.|+|||||||.+|...+.+++..+|++|||||+.+|+++||..+|..+...++|+|||+||||+. ++.+
T Consensus 68 ---~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~-------~a~~ 137 (607)
T PRK10218 68 ---YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP-------GARP 137 (607)
T ss_pred ---EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC-------CCch
Confidence 359999999999999999999999999999999999999999999999999999999999999985 3444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhh----------hhh-------hh
Q 036359 437 KKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKT----------MVK-------KL 499 (657)
Q Consensus 437 ~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~----------L~e-------~l 499 (657)
...+ ..+...|...++.. ....+|++++||++|.+ +.. .+
T Consensus 138 ~~vl---------------~ei~~l~~~l~~~~--------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 138 DWVV---------------DQVFDLFVNLDATD--------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hHHH---------------HHHHHHHhccCccc--------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 3333 23333333223221 12358999999999862 222 22
Q ss_pred cc-----ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeec----cccc
Q 036359 500 AF-----RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQH----HKEI 569 (657)
Q Consensus 500 ~~-----~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v 569 (657)
+. ..||++.|+.++.+++.|++++|+|++|+|+.||.|+ .+..+ .....+|.++|.+ +.++
T Consensus 195 P~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~---------~~~~~rv~~l~~~~g~~~~~v 265 (607)
T PRK10218 195 PAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEG---------KTRNAKVGKVLGHLGLERIET 265 (607)
T ss_pred CCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCC---------cEeeEEEEEEEEEecCCceEC
Confidence 21 3469999999999999999999999999999999998 33211 1124567777644 5566
Q ss_pred ccc-cccEEEecCCCCCCCCCeEEEc
Q 036359 570 KAA-QGIKITAQGLQDAIAGTSLYVV 594 (657)
Q Consensus 570 ~~a-~gv~i~~~gl~~~~aG~~l~v~ 594 (657)
..| +|-.+++.||+++..|++|+..
T Consensus 266 ~~a~AGdIvai~gl~~~~~GdTl~~~ 291 (607)
T PRK10218 266 DLAEAGDIVAITGLGELNISDTVCDT 291 (607)
T ss_pred CEEcCCCEEEEECccccccCcEEecC
Confidence 665 5888889999999999999743
No 36
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.96 E-value=1.5e-28 Score=270.05 Aligned_cols=262 Identities=23% Similarity=0.267 Sum_probs=182.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc---cccccCceeeeccceeeecccccc------hhhc-c-cc-c-cccCCCcEE
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV---QEGEAGGITQQIGATYFPVENIQK------RTEK-L-NA-D-AKLKVPGLL 363 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v---~~~~~~GiT~~ig~~~~~~~~~~~------~~~~-~-~~-~-~~~~~~~l~ 363 (657)
+..|+++||+|||||||+++|.+... .....+|+|..+++.++.+..... .+.. . .. + .......++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 45599999999999999999986532 234568899988876655321000 0000 0 00 0 001134699
Q ss_pred EEeCCCCCcchhhhhcCCCCCceeeEeecccCCC-chhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHHH
Q 036359 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKALE 441 (657)
Q Consensus 364 iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L~ 441 (657)
|||||||.+|...+.++++.+|++|||||+++|+ .+||.+|+..+..++++ +|||+||+|++. ....
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~------~~~~----- 152 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS------KEKA----- 152 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC------HHHH-----
Confidence 9999999999999999999999999999999998 89999999999988875 899999999963 0000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhh-------c-----cccccceeE
Q 036359 442 QQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKL-------A-----FRNEVQCTI 509 (657)
Q Consensus 442 ~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l-------~-----~~~~~~~~V 509 (657)
...+..+...+... +...+++||+||+++.++..++ + ...+|+++|
T Consensus 153 ----------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I 210 (406)
T TIGR03680 153 ----------LENYEEIKEFVKGT------------VAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYV 210 (406)
T ss_pred ----------HHHHHHHHhhhhhc------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEE
Confidence 01112222222221 1135789999999988875532 1 134689999
Q ss_pred EEEEeecC--------ceeEEEEEEEeeeecCCCEEE-eccccchh-h--ccCCCCCceeEEeeeeeccccccccc-c--
Q 036359 510 LEVKVCEG--------YGTTIDVVLINGVLHEGDKIV-EPIDTKIQ-A--LLTPHPMKELRVKGAYQHHKEIKAAQ-G-- 574 (657)
Q Consensus 510 lev~~~~g--------~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr-~--ll~p~~~~e~rVksi~~~~~~v~~a~-g-- 574 (657)
.++|.+.| +|+|+.|+|.+|+|++||.|. +|...... . .+.| ...+|+||++|+.++..|. |
T Consensus 211 ~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~---~~~~V~sI~~~~~~~~~a~~G~~ 287 (406)
T TIGR03680 211 ARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEP---IYTEITSLRAGGYKVEEARPGGL 287 (406)
T ss_pred EEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccc---cceEEeEEEECCEECCEEcCCCE
Confidence 99998876 567999999999999999999 77531000 0 0111 1368999999999988773 4
Q ss_pred cEEEec---CCCC--CCCCCeEEEc
Q 036359 575 IKITAQ---GLQD--AIAGTSLYVV 594 (657)
Q Consensus 575 v~i~~~---gl~~--~~aG~~l~v~ 594 (657)
|.|++. +++. +..|+.|+-.
T Consensus 288 v~i~l~~~~~i~~~dv~~G~vl~~~ 312 (406)
T TIGR03680 288 VGVGTKLDPALTKADALAGQVVGKP 312 (406)
T ss_pred EEEeeccCCCCCHHHcccccEEEcC
Confidence 666653 5543 5788887644
No 37
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.2e-29 Score=267.56 Aligned_cols=240 Identities=26% Similarity=0.334 Sum_probs=178.9
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCC---------------cccccccCceeeeccceeeecccccchhhcccccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGT---------------NVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL 357 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~---------------~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~ 357 (657)
+++|| ++|+.|+|||||||.++|+.. +++.++.+|||.....+.+.|.. -
T Consensus 58 ~~iRN--fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-------------~ 122 (650)
T KOG0462|consen 58 ENIRN--FSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-------------G 122 (650)
T ss_pred hhccc--eEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-------------C
Confidence 67899 999999999999999999732 13445678999876665555543 0
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHH
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIK 437 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~ 437 (657)
..+-+++||||||.+|...+.|.+..||++||||||++|++.||...+.++..+|+-+|.|+||||++ +++..
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp-------~adpe 195 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP-------SADPE 195 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC-------CCCHH
Confidence 12458999999999999999999999999999999999999999999999999999999999999995 56543
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHc-CCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------cccc
Q 036359 438 KALEQQSKDVEDEFKMRLRNIITQFKEQ-GLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRNE 504 (657)
Q Consensus 438 ~~L~~q~~~~~~~~~~~~~~ii~~L~~~-G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~~ 504 (657)
. +..++.+. ++. .-.++.+||++|.++.+.|+ ...|
T Consensus 196 ~-------------------V~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~p 244 (650)
T KOG0462|consen 196 R-------------------VENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAP 244 (650)
T ss_pred H-------------------HHHHHHHHhcCC------------ccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcc
Confidence 3 33333221 221 23789999999988777653 2567
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccc-----hhhccCCCCCceeEEeeeeeccccccccc-ccEEE
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTK-----IQALLTPHPMKELRVKGAYQHHKEIKAAQ-GIKIT 578 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~-----Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-gv~i~ 578 (657)
|++.+++++.+...|.++.++|.+|.|++||.|.+-..++ +-.++.|... ....+.+++ |..|+
T Consensus 245 lr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~----------~~~~l~agqvGyIi~ 314 (650)
T KOG0462|consen 245 LRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMT----------PVVELDAGQVGYIIC 314 (650)
T ss_pred hHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCce----------eeeeecccccceeEe
Confidence 9999999999999999999999999999999998222221 1223333211 122334443 54444
Q ss_pred ecC-CCCCCCCCeEEEcC
Q 036359 579 AQG-LQDAIAGTSLYVVG 595 (657)
Q Consensus 579 ~~g-l~~~~aG~~l~v~~ 595 (657)
.-+ +..+..|++++...
T Consensus 315 ~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 315 NMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred cccccccccccceeeecc
Confidence 333 66777788777554
No 38
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.95 E-value=9.1e-28 Score=264.04 Aligned_cols=261 Identities=24% Similarity=0.295 Sum_probs=181.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccc-------hhhc-ccc-ccc-cCCCcEE
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQK-------RTEK-LNA-DAK-LKVPGLL 363 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~-------~~~~-~~~-~~~-~~~~~l~ 363 (657)
+..|+|+||+|||||||+++|.+.. ...+..+|+|..+++..+.+..... .+.. +.. +.. ...+.++
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 4559999999999999999997643 2344568999988876655421100 0000 000 000 0024689
Q ss_pred EEeCCCCCcchhhhhcCCCCCceeeEeecccCCC-chhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHHH
Q 036359 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKALE 441 (657)
Q Consensus 364 iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L~ 441 (657)
|||||||.+|...+.+++..+|++|||||+++|+ .+++.+++..+...+++ +|+|+||+|++. ...+
T Consensus 89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~------~~~~----- 157 (411)
T PRK04000 89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS------KERA----- 157 (411)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc------chhH-----
Confidence 9999999999988888999999999999999998 89999999999888874 899999999963 0000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------cccccceeE
Q 036359 442 QQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRNEVQCTI 509 (657)
Q Consensus 442 ~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~~~~~~V 509 (657)
...+..+...+... +...+++||+||+++.++..++. ...+|+++|
T Consensus 158 ----------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I 215 (411)
T PRK04000 158 ----------LENYEQIKEFVKGT------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYV 215 (411)
T ss_pred ----------HHHHHHHHHHhccc------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEE
Confidence 00112222222211 01347899999999887755332 134689999
Q ss_pred EEEEeecC--------ceeEEEEEEEeeeecCCCEEE-ecccc----chhhccCCCCCceeEEeeeeeccccccccc-c-
Q 036359 510 LEVKVCEG--------YGTTIDVVLINGVLHEGDKIV-EPIDT----KIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G- 574 (657)
Q Consensus 510 lev~~~~g--------~GtVv~g~v~~G~Lk~Gd~I~-gp~~~----~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g- 574 (657)
.++|.+.| .|+|++|+|.+|+|++||.|. +|... .+ .-+.| ...+|+||++|+..+..|. |
T Consensus 216 ~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~-~~~~~---~~~~VksI~~~~~~~~~a~~G~ 291 (411)
T PRK04000 216 ARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGK-TKWEP---ITTKIVSLRAGGEKVEEARPGG 291 (411)
T ss_pred EeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccc-ccccc---ceEEEeEEEECCEECCEEcCCC
Confidence 99998876 467999999999999999999 77531 00 00111 1368999999999998773 4
Q ss_pred -cEEEec---CCC--CCCCCCeEEEc
Q 036359 575 -IKITAQ---GLQ--DAIAGTSLYVV 594 (657)
Q Consensus 575 -v~i~~~---gl~--~~~aG~~l~v~ 594 (657)
+.|++. +++ ++..|+.|+-.
T Consensus 292 ~v~i~l~~~~~i~~~~i~~G~vl~~~ 317 (411)
T PRK04000 292 LVGVGTKLDPSLTKADALAGSVAGKP 317 (411)
T ss_pred EEEEEeccCCCCCHHHccCccEEEcC
Confidence 667765 554 36788887744
No 39
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.95 E-value=9.5e-28 Score=277.51 Aligned_cols=238 Identities=23% Similarity=0.300 Sum_probs=173.3
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc--c-------------------------------ccccCceeeeccceeeecccc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV--Q-------------------------------EGEAGGITQQIGATYFPVENI 344 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v--~-------------------------------~~~~~GiT~~ig~~~~~~~~~ 344 (657)
..|+|+||+|||||||+++|+...- . .++.+|+|.+.+..++.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~---- 100 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA---- 100 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc----
Confidence 4489999999999999999985431 1 01123333333333332
Q ss_pred cchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccc
Q 036359 345 QKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKAD 423 (657)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiD 423 (657)
.+...++|||||||.+|...+..++..+|++|||||+..|+.+||.+|+.++..+++| +|||+||||
T Consensus 101 ------------~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 101 ------------TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred ------------cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecc
Confidence 3345699999999999988888899999999999999999999999999999999875 889999999
Q ss_pred cccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhh-------
Q 036359 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV------- 496 (657)
Q Consensus 424 l~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~------- 496 (657)
++. |.. ..+......+...+...|+ ..+++||+||++|.++.
T Consensus 169 ~~~-~~~------------------~~~~~i~~~i~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~ 217 (632)
T PRK05506 169 LVD-YDQ------------------EVFDEIVADYRAFAAKLGL------------HDVTFIPISALKGDNVVTRSARMP 217 (632)
T ss_pred ccc-chh------------------HHHHHHHHHHHHHHHHcCC------------CCccEEEEecccCCCccccccCCC
Confidence 963 221 1122222334344444454 24789999999987754
Q ss_pred --------hhhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEE
Q 036359 497 --------KKLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRV 559 (657)
Q Consensus 497 --------e~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rV 559 (657)
+.|. ...||+++|..++.....+..+.|+|.+|+|++||.|+ +|.. ..++|
T Consensus 218 wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~------------~~~~V 285 (632)
T PRK05506 218 WYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSG------------KTSRV 285 (632)
T ss_pred cccHhHHHHHHhcCCCCCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCC------------ceEEE
Confidence 2222 23468899999876432223367999999999999999 7743 35899
Q ss_pred eeeeeccccccccc---ccEEEecCCCCCCCCCeEEEc
Q 036359 560 KGAYQHHKEIKAAQ---GIKITAQGLQDAIAGTSLYVV 594 (657)
Q Consensus 560 ksi~~~~~~v~~a~---gv~i~~~gl~~~~aG~~l~v~ 594 (657)
+||++|+..+..|. .|.|++.+-.++..|+.|+-.
T Consensus 286 ksI~~~~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~ 323 (632)
T PRK05506 286 KRIVTPDGDLDEAFAGQAVTLTLADEIDISRGDMLARA 323 (632)
T ss_pred EEEEECCceeCEEcCCCeEEEEecCccccCCccEEecC
Confidence 99999999988763 477888776667889988754
No 40
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.95 E-value=3e-27 Score=270.01 Aligned_cols=240 Identities=24% Similarity=0.309 Sum_probs=173.4
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc--c-------------cccccCceeeeccceeeecccccchhhccccccccC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN--V-------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLK 358 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~--v-------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~ 358 (657)
++|| |+|+||+|||||||+++|+... + ..++.+|+|.......+.|.... -.
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~-----------g~ 68 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKD-----------GE 68 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCC-----------CC
Confidence 4688 9999999999999999998532 1 11234567665554444442100 01
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
.+.++|||||||.+|...+.+++..||++|||||+++|++.||..+|..+...++|+|+|+||+|+.. .+...
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~-------~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS-------ADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc-------cCHHH
Confidence 13489999999999999999999999999999999999999999999888888999999999999852 11111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc------------ccccc
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF------------RNEVQ 506 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~------------~~~~~ 506 (657)
.+ ..+... .|+. ...++++||++|.++.+++.. ..||+
T Consensus 142 ~~---------------~el~~~---lg~~------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~ 191 (595)
T TIGR01393 142 VK---------------KEIEEV---IGLD------------ASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLK 191 (595)
T ss_pred HH---------------HHHHHH---hCCC------------cceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeE
Confidence 10 111111 1221 125799999999887665421 35689
Q ss_pred eeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecc---cccccc-cc-cEEEec
Q 036359 507 CTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHH---KEIKAA-QG-IKITAQ 580 (657)
Q Consensus 507 ~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~---~~v~~a-~g-v~i~~~ 580 (657)
+.|++++.+++.|+|++++|.+|+|+.||.|. .|.. ...+|.++++++ .++..+ +| |++.+.
T Consensus 192 ~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~------------~~~~v~~i~~~~~~~~~v~~~~aGdIg~i~~ 259 (595)
T TIGR01393 192 ALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG------------KEYEVDEVGVFTPKLTKTDELSAGEVGYIIA 259 (595)
T ss_pred EEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCC------------CeeEEeEEEEecCCceECCEEcCCCEEEEec
Confidence 99999999999999999999999999999998 4432 235677777665 333433 34 555556
Q ss_pred CC---CCCCCCCeEEEcC
Q 036359 581 GL---QDAIAGTSLYVVG 595 (657)
Q Consensus 581 gl---~~~~aG~~l~v~~ 595 (657)
|+ .++..|++|+...
T Consensus 260 ~~~~~~~~~~Gdtl~~~~ 277 (595)
T TIGR01393 260 GIKDVSDVRVGDTITHVK 277 (595)
T ss_pred cccccCccCCCCEEECCC
Confidence 65 5578999997554
No 41
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.95 E-value=3.7e-27 Score=269.57 Aligned_cols=240 Identities=25% Similarity=0.331 Sum_probs=174.2
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCc--c-------------cccccCceeeeccceeeecccccchhhcccccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTN--V-------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL 357 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~--v-------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~ 357 (657)
.++|| |+|+||+|||||||+++|+... + ..++.+|+|.......+.|.... -
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~d-----------g 71 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKD-----------G 71 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccC-----------C
Confidence 45788 9999999999999999997521 1 12345677766655555443100 0
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHH
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIK 437 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~ 437 (657)
..+.++|||||||.+|...+.+++..||++|||||+++|+..||..+|..+...++|+|+|+||+|+.. +++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~-------a~~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA-------ADPE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc-------ccHH
Confidence 123589999999999999999999999999999999999999999999988888999999999999852 2211
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc------------ccc
Q 036359 438 KALEQQSKDVEDEFKMRLRNIITQFKE-QGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF------------RNE 504 (657)
Q Consensus 438 ~~L~~q~~~~~~~~~~~~~~ii~~L~~-~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~------------~~~ 504 (657)
. +...+.. .|+. ...++++||++|.++.+++.. ..|
T Consensus 145 ~-------------------v~~ei~~~lg~~------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~p 193 (600)
T PRK05433 145 R-------------------VKQEIEDVIGID------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAP 193 (600)
T ss_pred H-------------------HHHHHHHHhCCC------------cceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCC
Confidence 1 1111111 1221 125899999999887654421 346
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecc---cccccc-cc-cEEE
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHH---KEIKAA-QG-IKIT 578 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~---~~v~~a-~g-v~i~ 578 (657)
+++.|++++.+++.|+|++++|++|+|+.||.|. .|.. ...+|.++++++ .++..+ +| +++.
T Consensus 194 l~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~------------~~~~V~~i~~~~~~~~~v~~~~aGdIg~i 261 (600)
T PRK05433 194 LKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTG------------KEYEVDEVGVFTPKMVPVDELSAGEVGYI 261 (600)
T ss_pred ceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCC------------ceEEEEEeeccCCCceECcEEcCCCEEEE
Confidence 8999999999999999999999999999999998 4432 235666766543 344444 34 4444
Q ss_pred ecCC---CCCCCCCeEEEcC
Q 036359 579 AQGL---QDAIAGTSLYVVG 595 (657)
Q Consensus 579 ~~gl---~~~~aG~~l~v~~ 595 (657)
+.|+ .++..|++|+...
T Consensus 262 ~~~ik~~~~~~~Gdtl~~~~ 281 (600)
T PRK05433 262 IAGIKDVRDARVGDTITLAK 281 (600)
T ss_pred ecccccccccCCCCEEECCC
Confidence 4554 5678999997544
No 42
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3.2e-27 Score=251.13 Aligned_cols=196 Identities=26% Similarity=0.358 Sum_probs=160.7
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCc---------------ccccccCceeeeccceeeecccccchhhccccccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTN---------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAK 356 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~---------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~ 356 (657)
..++|| ++|+.|.|||||||.++|+... ...++.+|||+...+..+.+....+
T Consensus 6 ~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g---------- 73 (603)
T COG0481 6 QKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDG---------- 73 (603)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCC----------
Confidence 356899 9999999999999999997321 2345679999887777766653221
Q ss_pred cCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccH
Q 036359 357 LKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 357 ~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~ 436 (657)
+.|.++|||||||.+|+..+.|.+..|.++||||||+.|+..||+....++...++-+|.|+||||++ .++.
T Consensus 74 -~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP-------~Adp 145 (603)
T COG0481 74 -ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------AADP 145 (603)
T ss_pred -CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC-------CCCH
Confidence 23568999999999999999999999999999999999999999999999999999999999999995 5664
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------ccc
Q 036359 437 KKALEQQSKDVEDEFKMRLRNIITQFKE-QGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRN 503 (657)
Q Consensus 437 ~~~L~~q~~~~~~~~~~~~~~ii~~L~~-~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~ 503 (657)
.+ +..++.. .|+.. -..|-+||+||.++.+.|. ...
T Consensus 146 er-------------------vk~eIe~~iGid~------------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~ 194 (603)
T COG0481 146 ER-------------------VKQEIEDIIGIDA------------SDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDA 194 (603)
T ss_pred HH-------------------HHHHHHHHhCCCc------------chheeEecccCCCHHHHHHHHHhhCCCCCCCCCC
Confidence 33 3333322 24432 3568899999988776553 245
Q ss_pred ccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE
Q 036359 504 EVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV 538 (657)
Q Consensus 504 ~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~ 538 (657)
|+++.+++++.+...|.|+.++|.+|+|+.||.|.
T Consensus 195 pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~ 229 (603)
T COG0481 195 PLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIR 229 (603)
T ss_pred cceEEEEeccccccceEEEEEEEeeceecCCCEEE
Confidence 79999999999999999999999999999999998
No 43
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.8e-26 Score=235.18 Aligned_cols=241 Identities=22% Similarity=0.306 Sum_probs=181.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc-------ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN-------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG 369 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~-------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG 369 (657)
|..|+|+||+|+|||||..+|.... -+....+|||-++|+..+....-.. +..+.. -.++||||||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par----Lpq~e~---lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR----LPQGEQ---LQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc----cCcccc---ceeEEEeCCC
Confidence 4559999999999999999997432 2345679999999998877643211 111111 2489999999
Q ss_pred CCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHH
Q 036359 370 HESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVED 449 (657)
Q Consensus 370 h~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~ 449 (657)
|.........|+...|+.|||||+..|.++||-++|.+...+....|||+||+|.+.+.++ . .
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr--------------~---s 142 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQR--------------A---S 142 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhh--------------h---h
Confidence 9999999999999999999999999999999999999888887789999999999752211 1 1
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhh----hhhh---hhh---------ccccccceeEEEEE
Q 036359 450 EFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRH----KTMV---KKL---------AFRNEVQCTILEVK 513 (657)
Q Consensus 450 ~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~----~~L~---e~l---------~~~~~~~~~Vlev~ 513 (657)
.+...-..+..-|...|| +++.||+++||..| +.+- +.| +...||.+.|..+|
T Consensus 143 ki~k~~kk~~KtLe~t~f-----------~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF 211 (522)
T KOG0461|consen 143 KIEKSAKKVRKTLESTGF-----------DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCF 211 (522)
T ss_pred HHHHHHHHHHHHHHhcCc-----------CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeE
Confidence 112222344455555554 47899999999997 3332 222 23567999999999
Q ss_pred eecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeecccccccc-cc--cEEEecCCC
Q 036359 514 VCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QG--IKITAQGLQ 583 (657)
Q Consensus 514 ~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~g--v~i~~~gl~ 583 (657)
.++|.|||.+|.|.+|.|+.|+.|.-|.-+ ..-+|+|++|++.+|..| +| +++.+.-++
T Consensus 212 ~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~-----------e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd 273 (522)
T KOG0461|consen 212 AIKGQGTVLTGTVLRGVLRLNTEIEFPALN-----------EKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFD 273 (522)
T ss_pred EeccCceEEeeeEEEeEEecCcEEeecccc-----------hhhhhhhHHHHhhhhhhhhcccceeeeeeccC
Confidence 999999999999999999999999855431 224699999999999876 34 455555443
No 44
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1e-25 Score=258.33 Aligned_cols=269 Identities=26% Similarity=0.325 Sum_probs=186.2
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCc--------c----------cccccCceeeeccceeeecccccchhhcccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTN--------V----------QEGEAGGITQQIGATYFPVENIQKRTEKLNA 353 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~--------v----------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~ 353 (657)
..++|| |+|+||+|||||||+.+|+... + ..+..+|||++..++.+.|..
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~---------- 74 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG---------- 74 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC----------
Confidence 456888 9999999999999999997321 1 122357788777777777653
Q ss_pred ccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCC
Q 036359 354 DAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKN 433 (657)
Q Consensus 354 ~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~ 433 (657)
.+.|+|||||||.+|+..+.+.+..+|++|+|||+..|+++||...|+++...++|.|+++||||++ +
T Consensus 75 -----~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~-------~ 142 (697)
T COG0480 75 -----DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL-------G 142 (697)
T ss_pred -----ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc-------c
Confidence 1359999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred ccHHHHHHhhhHHHHH-------------H--------------HH-------------------HHHHHHHHHHHHcCC
Q 036359 434 APIKKALEQQSKDVED-------------E--------------FK-------------------MRLRNIITQFKEQGL 467 (657)
Q Consensus 434 ~~~~~~L~~q~~~~~~-------------~--------------~~-------------------~~~~~ii~~L~~~G~ 467 (657)
++|...+.+....+.. . |. .....++..+.+...
T Consensus 143 a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de 222 (697)
T COG0480 143 ADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDE 222 (697)
T ss_pred cChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCH
Confidence 5555544432221100 0 00 000011111111100
Q ss_pred c-hhhhhhccc---------------cCcceeEEeccchhhhhh---hh----hhcc-----------------------
Q 036359 468 N-TELYYKNKE---------------MGKTFSIVPTSAIRHKTM---VK----KLAF----------------------- 501 (657)
Q Consensus 468 ~-~~~~~~~~~---------------~~~~v~iVpvSA~t~~~L---~e----~l~~----------------------- 501 (657)
. .+.|..+.+ -+..+|++..||..+.++ ++ .|+.
T Consensus 223 ~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~ 302 (697)
T COG0480 223 ELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKA 302 (697)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccC
Confidence 0 011111100 024678888999764322 22 2221
Q ss_pred --ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-cc
Q 036359 502 --RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QG 574 (657)
Q Consensus 502 --~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~g 574 (657)
..|+.+.|+.+..++..|.+.+++|++|+|+.|+.|+... +.+..||..++.. +.++..+ .|
T Consensus 303 ~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~-----------~~~~erv~~l~~~~~~~~~~v~~~~AG 371 (697)
T COG0480 303 SDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNST-----------KGKKERVGRLLLMHGNEREEVDEVPAG 371 (697)
T ss_pred CCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCC-----------CCccEEEEEEEEccCCceeecccccCc
Confidence 3468899999999999999999999999999999888111 1134556555543 2344444 48
Q ss_pred cEEEecCCCCCCCCCeEEEcC
Q 036359 575 IKITAQGLQDAIAGTSLYVVG 595 (657)
Q Consensus 575 v~i~~~gl~~~~aG~~l~v~~ 595 (657)
-.+++.||.++..|++|+..+
T Consensus 372 ~I~a~~Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 372 DIVALVGLKDATTGDTLCDEN 392 (697)
T ss_pred cEEEEEcccccccCCeeecCC
Confidence 888899999999999999765
No 45
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.7e-25 Score=234.06 Aligned_cols=242 Identities=25% Similarity=0.423 Sum_probs=190.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc--c-----------------------------cccccCceeeeccceeeecccc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPVENI 344 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~--v-----------------------------~~~~~~GiT~~ig~~~~~~~~~ 344 (657)
.+..++|+||+++||||+-+.|+... + ...+..|.|...|..+|....
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~- 156 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN- 156 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc-
Confidence 44459999999999999999987422 1 122335566666666665543
Q ss_pred cchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-----C--chhHHHHHHHHHhcCCc-eE
Q 036359 345 QKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-----I--KPQTIESLDLLKERSVD-FI 416 (657)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-----~--~~qt~e~l~~l~~~~vP-iI 416 (657)
.+++|+|+|||..|..++..|++++|+++||+++.-| + ..||++|..+++..++. +|
T Consensus 157 ---------------~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV 221 (501)
T KOG0459|consen 157 ---------------KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 221 (501)
T ss_pred ---------------eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence 3599999999999999999999999999999999764 2 46999999999999998 89
Q ss_pred EEeccccccc-CcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhh
Q 036359 417 IALSKADKLY-GWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTM 495 (657)
Q Consensus 417 vvlNKiDl~~-~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L 495 (657)
+++||||-+. +|.. ++|+.....+..+|...|||.. .++.|+|+|+++|.++
T Consensus 222 v~vNKMddPtvnWs~------------------eRy~E~~~k~~~fLr~~g~n~~---------~d~~f~p~sg~tG~~~ 274 (501)
T KOG0459|consen 222 VLINKMDDPTVNWSN------------------ERYEECKEKLQPFLRKLGFNPK---------PDKHFVPVSGLTGANV 274 (501)
T ss_pred EEEEeccCCccCcch------------------hhHHHHHHHHHHHHHHhcccCC---------CCceeeecccccccch
Confidence 9999999876 7764 4667777888889998999863 5788999999998887
Q ss_pred hhhhc------------------------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccC
Q 036359 496 VKKLA------------------------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLT 550 (657)
Q Consensus 496 ~e~l~------------------------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~ 550 (657)
.+... .+.|++|+|.+-+. ..|||+.|.|.+|.++.||.++ .|..+
T Consensus 275 k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Kyk--dmGTvv~GKvEsGsi~kg~~lvvMPnk~------- 345 (501)
T KOG0459|consen 275 KDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKYK--DMGTVVGGKVESGSIKKGQQLVVMPNKT------- 345 (501)
T ss_pred hhcccccCCcccCCccceehhccCcccccCCCCEEeehhhhcc--ccceEEEEEecccceecCCeEEEccCCc-------
Confidence 66432 13468889888776 4889999999999999999999 77653
Q ss_pred CCCCceeEEeeeeecccccccc-c--ccEEEecCCCC--CCCCCeEEEc
Q 036359 551 PHPMKELRVKGAYQHHKEIKAA-Q--GIKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 551 p~~~~e~rVksi~~~~~~v~~a-~--gv~i~~~gl~~--~~aG~~l~v~ 594 (657)
.+.|-+||....++..+ + +++|.++|++. +.+|-+|+..
T Consensus 346 -----~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~ 389 (501)
T KOG0459|consen 346 -----NVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSP 389 (501)
T ss_pred -----ceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecC
Confidence 46788888877666644 3 59999999865 6888555543
No 46
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.92 E-value=8.7e-25 Score=256.36 Aligned_cols=261 Identities=23% Similarity=0.300 Sum_probs=171.7
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCc-c---------------cccccCceeeeccceeeecccccchhhcccccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTN-V---------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~-v---------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~ 355 (657)
..++|| |+|+||+|||||||+++|+... . ..+..+|||...+...+.|..
T Consensus 17 ~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~------------ 82 (731)
T PRK07560 17 PEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY------------ 82 (731)
T ss_pred hhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe------------
Confidence 456888 9999999999999999997432 1 112234555554444443311
Q ss_pred ccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCcc
Q 036359 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAP 435 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~ 435 (657)
....+.++|||||||.+|...+.++++.+|++|+|||+..|+..||..+|.++...++|+|||+||||+.. ++
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~-------~~ 155 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI-------KE 155 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc-------cc
Confidence 01134589999999999999999999999999999999999999999999998888999999999999862 33
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhh---hhhccccCcceeEEeccchhhh-------------------
Q 036359 436 IKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTEL---YYKNKEMGKTFSIVPTSAIRHK------------------- 493 (657)
Q Consensus 436 ~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~---~~~~~~~~~~v~iVpvSA~t~~------------------- 493 (657)
+...+. .++..|...+.++...+..+.- ..+ |.... ..-.++..|++.+-
T Consensus 156 ~~~~~~----~~~~~~~~~~~e~~~~l~~~~~-~~~~~~~~~~~---~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e 227 (731)
T PRK07560 156 LKLTPQ----EMQQRLLKIIKDVNKLIKGMAP-EEFKEKWKVDV---EDGTVAFGSALYNWAISVPMMQKTGIKFKDIID 227 (731)
T ss_pred ccCCHH----HHHHHHHHHHHHHHHHHHHhhh-hhhhcceeecC---CCCcEeeeecccccceeHHHHHHhCCCHHHHHH
Confidence 322221 2233333333332222222110 000 00000 01123445665421
Q ss_pred ------------------hhhhh----hc------------------------------cccccceeEEEEEeecCceeE
Q 036359 494 ------------------TMVKK----LA------------------------------FRNEVQCTILEVKVCEGYGTT 521 (657)
Q Consensus 494 ------------------~L~e~----l~------------------------------~~~~~~~~Vlev~~~~g~GtV 521 (657)
.|++. ++ ...++.+.|+.+..+++.|.+
T Consensus 228 ~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~v 307 (731)
T PRK07560 228 YYEKGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEV 307 (731)
T ss_pred HHhcCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeE
Confidence 12221 11 122578899999999999999
Q ss_pred EEEEEEeeeecCCCEEE--eccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEecCCCCCCCCCeEEEc
Q 036359 522 IDVVLINGVLHEGDKIV--EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITAQGLQDAIAGTSLYVV 594 (657)
Q Consensus 522 v~g~v~~G~Lk~Gd~I~--gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~~gl~~~~aG~~l~v~ 594 (657)
++++|++|+|+.||.|. ++. ...+|..++.. ..++..+ +|-.+++.||+++..|++|...
T Consensus 308 a~~RV~sGtL~~Gd~v~~~~~~-------------~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~ 374 (731)
T PRK07560 308 ATGRVFSGTLRKGQEVYLVGAK-------------KKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSV 374 (731)
T ss_pred EEEEEEEeEEcCCCEEEEcCCC-------------CceEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCC
Confidence 99999999999999997 221 12456666543 3455555 4877788899988899999743
No 47
>PRK00007 elongation factor G; Reviewed
Probab=99.92 E-value=2.2e-24 Score=251.53 Aligned_cols=266 Identities=24% Similarity=0.254 Sum_probs=179.2
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCc--------c----------cccccCceeeeccceeeecccccchhhcccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTN--------V----------QEGEAGGITQQIGATYFPVENIQKRTEKLNA 353 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~--------v----------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~ 353 (657)
..++|| |+|+||+|||||||+++|+... + ..+..+|+|.+.....+.|.
T Consensus 7 ~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----------- 73 (693)
T PRK00007 7 LERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 73 (693)
T ss_pred ccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-----------
Confidence 456788 9999999999999999997311 1 11134666666655555543
Q ss_pred ccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCC
Q 036359 354 DAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKN 433 (657)
Q Consensus 354 ~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~ 433 (657)
.+.++|||||||.+|...+.+++..+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 74 -----~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~------- 141 (693)
T PRK00007 74 -----DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG------- 141 (693)
T ss_pred -----CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 34599999999999998889999999999999999999999999999999999999999999999962
Q ss_pred ccHHHHHHhhhHHH-------------------------------------------------HHHHHHHHHHHHHHHHH
Q 036359 434 APIKKALEQQSKDV-------------------------------------------------EDEFKMRLRNIITQFKE 464 (657)
Q Consensus 434 ~~~~~~L~~q~~~~-------------------------------------------------~~~~~~~~~~ii~~L~~ 464 (657)
+++...+......+ ..........++..+.+
T Consensus 142 ~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 221 (693)
T PRK00007 142 ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAE 221 (693)
T ss_pred CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHc
Confidence 22333322221110 00001111122222211
Q ss_pred cC------------Cchhhhhhc----cccCcceeEEeccchhhhhhhhhh-------cc--------------------
Q 036359 465 QG------------LNTELYYKN----KEMGKTFSIVPTSAIRHKTMVKKL-------AF-------------------- 501 (657)
Q Consensus 465 ~G------------~~~~~~~~~----~~~~~~v~iVpvSA~t~~~L~e~l-------~~-------------------- 501 (657)
.. +..+.+... -..+..+|++..||+++.++..+| +.
T Consensus 222 ~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 301 (693)
T PRK00007 222 ADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVE 301 (693)
T ss_pred cCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCcccccee
Confidence 10 000000000 001356888889999875543332 11
Q ss_pred -----ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc
Q 036359 502 -----RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA 572 (657)
Q Consensus 502 -----~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a 572 (657)
..++.+.|+.+..++..|.+.+++|++|+|+.||.|.... ..+..+|..++.. ..++..+
T Consensus 302 ~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~-----------~~~~eki~~l~~~~g~~~~~v~~~ 370 (693)
T PRK00007 302 RKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNST-----------KGKKERIGRILQMHANKREEIKEV 370 (693)
T ss_pred ecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCC-----------CCceeEeceeEEeccCCccccccc
Confidence 1247789999999999999999999999999999998221 1123345555442 3455555
Q ss_pred -cccEEEecCCCCCCCCCeEEE
Q 036359 573 -QGIKITAQGLQDAIAGTSLYV 593 (657)
Q Consensus 573 -~gv~i~~~gl~~~~aG~~l~v 593 (657)
+|-.+.+.||.++..|++|+.
T Consensus 371 ~aGdI~~i~gl~~~~~GdtL~~ 392 (693)
T PRK00007 371 RAGDIAAAVGLKDTTTGDTLCD 392 (693)
T ss_pred CCCcEEEEeCCccCCcCCEeeC
Confidence 588888899999999999963
No 48
>PRK12739 elongation factor G; Reviewed
Probab=99.92 E-value=2.6e-24 Score=251.06 Aligned_cols=265 Identities=24% Similarity=0.277 Sum_probs=178.1
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCc--------c----------cccccCceeeeccceeeecccccchhhccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTN--------V----------QEGEAGGITQQIGATYFPVENIQKRTEKLNAD 354 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~--------v----------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~ 354 (657)
.++|| |+|+||+|||||||+++|+... + ..+..+|+|.+....++.|.
T Consensus 6 ~~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------ 71 (691)
T PRK12739 6 EKTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------ 71 (691)
T ss_pred cCeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC------------
Confidence 45777 9999999999999999997421 0 11135667766666666553
Q ss_pred cccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCc
Q 036359 355 AKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNA 434 (657)
Q Consensus 355 ~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~ 434 (657)
.+.++|||||||.+|...+.+++..+|++|||||+..|+..||..+|.++...++|+|||+||||+.. +
T Consensus 72 ----~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~-------~ 140 (691)
T PRK12739 72 ----GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG-------A 140 (691)
T ss_pred ----CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------C
Confidence 24599999999999999999999999999999999999999999999999999999999999999963 2
Q ss_pred cHHHHHHhhhHHH-------------------------------------------------HHHHHHHHHHHHHHHHH-
Q 036359 435 PIKKALEQQSKDV-------------------------------------------------EDEFKMRLRNIITQFKE- 464 (657)
Q Consensus 435 ~~~~~L~~q~~~~-------------------------------------------------~~~~~~~~~~ii~~L~~- 464 (657)
++...+......+ ..........++..+.+
T Consensus 141 ~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~ 220 (691)
T PRK12739 141 DFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEV 220 (691)
T ss_pred CHHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 2322222211110 00000011111111111
Q ss_pred -----------cCCchhhhhh----ccccCcceeEEeccchhhhhh---hhh----hcc---------------------
Q 036359 465 -----------QGLNTELYYK----NKEMGKTFSIVPTSAIRHKTM---VKK----LAF--------------------- 501 (657)
Q Consensus 465 -----------~G~~~~~~~~----~~~~~~~v~iVpvSA~t~~~L---~e~----l~~--------------------- 501 (657)
.++..+.... .-..+..+|++..||+++.++ ++. ++.
T Consensus 221 dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~ 300 (691)
T PRK12739 221 DEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERP 300 (691)
T ss_pred CHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeec
Confidence 1111100000 000135678899999997553 332 221
Q ss_pred ---ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-c
Q 036359 502 ---RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-Q 573 (657)
Q Consensus 502 ---~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~ 573 (657)
..++.+.|+.+..+++.|.+++++|++|+|+.||.|..+.. .+..+|..+|.. ..++..+ +
T Consensus 301 ~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~-----------~~~~~v~~l~~~~g~~~~~v~~~~a 369 (691)
T PRK12739 301 ASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTK-----------GKKERIGRLLQMHANKREEIKEVYA 369 (691)
T ss_pred cCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCC-----------CceEEecceEEEecCCcccccccCC
Confidence 22577899999999999999999999999999999972221 123445555432 3445555 5
Q ss_pred ccEEEecCCCCCCCCCeEEE
Q 036359 574 GIKITAQGLQDAIAGTSLYV 593 (657)
Q Consensus 574 gv~i~~~gl~~~~aG~~l~v 593 (657)
|-.+.+.|++++..|++|+.
T Consensus 370 GdI~~i~gl~~~~~gdtl~~ 389 (691)
T PRK12739 370 GDIAAAVGLKDTTTGDTLCD 389 (691)
T ss_pred CCEEEEeCCCcccCCCEEeC
Confidence 87788889999999999964
No 49
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.92 E-value=4.5e-24 Score=249.13 Aligned_cols=266 Identities=24% Similarity=0.234 Sum_probs=178.1
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCcc------------------cccccCceeeeccceeeecccccchhhcccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTNV------------------QEGEAGGITQQIGATYFPVENIQKRTEKLNA 353 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~v------------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~ 353 (657)
..++|| |+|+||+|||||||+++|+...- ...+.+|+|.+.....+.|.
T Consensus 7 ~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~----------- 73 (689)
T TIGR00484 7 LNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK----------- 73 (689)
T ss_pred cccccE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC-----------
Confidence 456888 99999999999999999974210 01123566666655555553
Q ss_pred ccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCC
Q 036359 354 DAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKN 433 (657)
Q Consensus 354 ~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~ 433 (657)
.+.++|||||||.+|...+.++++.+|++|||||+..|+..++..+|.++...++|+|+|+||||+..
T Consensus 74 -----~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~------- 141 (689)
T TIGR00484 74 -----GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG------- 141 (689)
T ss_pred -----CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 34599999999999998888899999999999999999999999999999999999999999999963
Q ss_pred ccHHHHHHhhhHH------------------------------------------------HHHHHHHHHHHHHHHHHHc
Q 036359 434 APIKKALEQQSKD------------------------------------------------VEDEFKMRLRNIITQFKEQ 465 (657)
Q Consensus 434 ~~~~~~L~~q~~~------------------------------------------------~~~~~~~~~~~ii~~L~~~ 465 (657)
+++...+...... +...+......++..+.+.
T Consensus 142 ~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~ 221 (689)
T TIGR00484 142 ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEF 221 (689)
T ss_pred CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3333332222111 0000011111111111111
Q ss_pred ------------CCchhhhhh----ccccCcceeEEeccchhhhhhhhhh-------cc---------------------
Q 036359 466 ------------GLNTELYYK----NKEMGKTFSIVPTSAIRHKTMVKKL-------AF--------------------- 501 (657)
Q Consensus 466 ------------G~~~~~~~~----~~~~~~~v~iVpvSA~t~~~L~e~l-------~~--------------------- 501 (657)
.+..+..+. .-..+..+|++..||+++.++..+| +.
T Consensus 222 dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~ 301 (689)
T TIGR00484 222 DEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERK 301 (689)
T ss_pred CHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeec
Confidence 111111110 0012467889999999975544332 11
Q ss_pred ---ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-c
Q 036359 502 ---RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-Q 573 (657)
Q Consensus 502 ---~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~ 573 (657)
..++.+.|+.+..+++.|.+++++|++|+|+.||.|..... ....+|..++.. ..++..+ +
T Consensus 302 ~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~-----------~~~~~i~~l~~~~g~~~~~v~~~~a 370 (689)
T TIGR00484 302 ASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRK-----------NKKERVGRLVKMHANNREEIKEVRA 370 (689)
T ss_pred CCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCC-----------CceEEecceEEeecCCcccccccCC
Confidence 12478899999999999999999999999999999982111 112234344332 2345544 5
Q ss_pred ccEEEecCCCCCCCCCeEEE
Q 036359 574 GIKITAQGLQDAIAGTSLYV 593 (657)
Q Consensus 574 gv~i~~~gl~~~~aG~~l~v 593 (657)
|-.+++.|+.++..|++|+.
T Consensus 371 GdI~~i~gl~~~~~gdtl~~ 390 (689)
T TIGR00484 371 GDICAAIGLKDTTTGDTLCD 390 (689)
T ss_pred CCEEEEcCCCCCCCCCEEeC
Confidence 88888889999999999963
No 50
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.2e-24 Score=222.18 Aligned_cols=239 Identities=25% Similarity=0.300 Sum_probs=173.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccchhh-----c----cc-cccc-cCCCcEE
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQKRTE-----K----LN-ADAK-LKVPGLL 363 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~~~~-----~----~~-~~~~-~~~~~l~ 363 (657)
.+|+++||+|||||||+.+|+|.. ++.+-.+|||+.+|+....+..-.. |. . +. ++.. --...+.
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~-c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPE-CYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCC-CCCCcccccCCCCCCCCCCccEEEEEE
Confidence 349999999999999999999866 3444568999999986554421100 10 0 00 1111 1124589
Q ss_pred EEeCCCCCcchhhhhcCCCCCceeeEeecccCCC-chhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHHH
Q 036359 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKALE 441 (657)
Q Consensus 364 iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L~ 441 (657)
|+|+|||+-+...+.+|+...|++||||+++..+ +|||.+||..+...|+. +|+|-||+|+++ -.++++
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~---------~E~AlE 160 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS---------RERALE 160 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec---------HHHHHH
Confidence 9999999999999999999999999999999864 89999999999999997 999999999985 122222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------cccccceeE
Q 036359 442 QQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRNEVQCTI 509 (657)
Q Consensus 442 ~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~~~~~~V 509 (657)
.+.+|..+++. .+..+.||||+||..+.|+.-++. ...+.+++|
T Consensus 161 ------------~y~qIk~FvkG------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v 216 (415)
T COG5257 161 ------------NYEQIKEFVKG------------TVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYV 216 (415)
T ss_pred ------------HHHHHHHHhcc------------cccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEE
Confidence 24455555542 134678999999999776654432 245689999
Q ss_pred EEEEeecC--------ceeEEEEEEEeeeecCCCEEE-ecc--ccch-hhccCCCCCceeEEeeeeeccccccccc
Q 036359 510 LEVKVCEG--------YGTTIDVVLINGVLHEGDKIV-EPI--DTKI-QALLTPHPMKELRVKGAYQHHKEIKAAQ 573 (657)
Q Consensus 510 lev~~~~g--------~GtVv~g~v~~G~Lk~Gd~I~-gp~--~~~V-r~ll~p~~~~e~rVksi~~~~~~v~~a~ 573 (657)
..+|.+.- .|-|+.|.+.+|.|++||.|- -|. +.+= |.-+. |+ ...|.|++-.+..++.|.
T Consensus 217 ~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~--pi-~T~i~Sl~ag~~~~~ea~ 289 (415)
T COG5257 217 ARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWE--PI-TTEIVSLQAGGEDVEEAR 289 (415)
T ss_pred EeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEE--Ee-eEEEEEEEeCCeeeeecc
Confidence 99999976 455999999999999999988 222 1110 11111 22 367889988888888874
No 51
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.92 E-value=5.6e-25 Score=227.48 Aligned_cols=269 Identities=17% Similarity=0.274 Sum_probs=191.8
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccc--------------cCceeeeccceeeecccccchhhccc-cccccCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGE--------------AGGITQQIGATYFPVENIQKRTEKLN-ADAKLKV 359 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~--------------~~GiT~~ig~~~~~~~~~~~~~~~~~-~~~~~~~ 359 (657)
.--..|+|+|.+|+|||||++.|++..+++++ ..|-|..+|...+-++.......... .+..+.+
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 33445999999999999999999988777664 24556556655554443221111110 0111111
Q ss_pred --------CcEEEEeCCCCCcchhhhhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcc
Q 036359 360 --------PGLLVVDTPGHESFTNLRSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWK 429 (657)
Q Consensus 360 --------~~l~iIDTPGh~~f~~~~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~ 429 (657)
.-++|||..||+.|...+..|+ +..|+++|+|-++.|+...|.+||.++..+.+|++||++|||+|+
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP--- 287 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP--- 287 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc---
Confidence 2389999999999987766555 789999999999999999999999999999999999999999984
Q ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhh-hc--------ccc--CcceeEEeccchhhhhhhhh
Q 036359 430 SCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYY-KN--------KEM--GKTFSIVPTSAIRHKTMVKK 498 (657)
Q Consensus 430 ~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~-~~--------~~~--~~~v~iVpvSA~t~~~L~e~ 498 (657)
+ |.+++.+.-+...|...|+...... ++ ..| ...+|||.+|.++|.+|.-+
T Consensus 288 ----A--------------NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 288 ----A--------------NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred ----H--------------HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 2 2233334445556666664321111 00 111 35689999999999876332
Q ss_pred ------h------ccccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeec
Q 036359 499 ------L------AFRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQH 565 (657)
Q Consensus 499 ------l------~~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~ 565 (657)
| ....|..+.|.++|.++|+|||+.|.+.+|+|+.+|.++ ||...+ .|..+.|+||+..
T Consensus 350 kmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G--------~F~pI~iKSIHRK 421 (641)
T KOG0463|consen 350 KMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNG--------DFMPIPIKSIHRK 421 (641)
T ss_pred HHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCC--------Ceeeeehhhhhhc
Confidence 2 235578899999999999999999999999999999999 997643 5667889999776
Q ss_pred ccccc---cccccEEEecCCCC--CCCCCeEE
Q 036359 566 HKEIK---AAQGIKITAQGLQD--AIAGTSLY 592 (657)
Q Consensus 566 ~~~v~---~a~gv~i~~~gl~~--~~aG~~l~ 592 (657)
+.+|. .++...++++-+.. +..|++|+
T Consensus 422 RMpV~~VrcGQtASFALKKIkr~~vRKGMVmV 453 (641)
T KOG0463|consen 422 RMPVGIVRCGQTASFALKKIKRKDVRKGMVMV 453 (641)
T ss_pred cccceEEeccchhhhHhhhcchhhhhcceEEe
Confidence 65554 44567788877765 35565554
No 52
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.92 E-value=4.3e-24 Score=240.79 Aligned_cols=279 Identities=17% Similarity=0.201 Sum_probs=174.3
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCcee----eecc-ceeeecccccchhhccc-cccccCCCcEEEEe
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGIT----QQIG-ATYFPVENIQKRTEKLN-ADAKLKVPGLLVVD 366 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT----~~ig-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~iID 366 (657)
.+.|| |+|+||+|||||||+++|+...-.....+.+. .... ..+.+.+..++.+.... ....++.+.++|||
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 45788 99999999999999999974211000000000 0000 01111111111111111 11223445699999
Q ss_pred CCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHH
Q 036359 367 TPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKD 446 (657)
Q Consensus 367 TPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~ 446 (657)
||||.+|...+.+++..+|++|+|||+..|+..+|...|.++...++|+|+|+||||+. ++++...+......
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~-------~a~~~~~l~~i~~~ 158 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD-------GREPLELLDEIEEV 158 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc-------ccCHHHHHHHHHHH
Confidence 99999999888889999999999999999999999999999999999999999999985 34443333322111
Q ss_pred HHH-------------------------------------------------HHHH-----HHHHHHHHH---HHcCCch
Q 036359 447 VED-------------------------------------------------EFKM-----RLRNIITQF---KEQGLNT 469 (657)
Q Consensus 447 ~~~-------------------------------------------------~~~~-----~~~~ii~~L---~~~G~~~ 469 (657)
+.. .+.. .+.++...| ...+..
T Consensus 159 l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~- 237 (526)
T PRK00741 159 LGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE- 237 (526)
T ss_pred hCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc-
Confidence 000 0000 000111111 000000
Q ss_pred hhhhhccccCcceeEEeccchhhhhhhhhhc-------c--------------ccccceeEEEEE---eecCceeEEEEE
Q 036359 470 ELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-------F--------------RNEVQCTILEVK---VCEGYGTTIDVV 525 (657)
Q Consensus 470 ~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-------~--------------~~~~~~~Vlev~---~~~g~GtVv~g~ 525 (657)
.....-.-+..+|++..||+++.++..+|. . ..+|.+.|+.+. ..+..|.+++++
T Consensus 238 -~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 238 -FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred -hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 000000125678999999999777655442 1 124778888887 456889999999
Q ss_pred EEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEecCCCCCCCCCeEEE
Q 036359 526 LINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITAQGLQDAIAGTSLYV 593 (657)
Q Consensus 526 v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~~gl~~~~aG~~l~v 593 (657)
|++|+|+.|+.|.-+. ..+..+|..++.. ...+..| +|..+.+.|+.....|++|+.
T Consensus 317 V~sG~l~~g~~v~~~~-----------~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~ 378 (526)
T PRK00741 317 VCSGKFEKGMKVRHVR-----------TGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQ 378 (526)
T ss_pred EeccEECCCCEEEecc-----------CCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccC
Confidence 9999999999998221 1234556555432 3455555 688899999999999999963
No 53
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=1.9e-25 Score=220.11 Aligned_cols=158 Identities=36% Similarity=0.513 Sum_probs=118.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCccc------------------ccccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQ------------------EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~------------------~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
+|+|+||+|||||||+++|++.... .+..+|+|..++...+.. ....+
T Consensus 5 ~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~--------------~~~~~ 70 (188)
T PF00009_consen 5 NIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK--------------NENNR 70 (188)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB--------------TESSE
T ss_pred EEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc--------------ccccc
Confidence 3999999999999999999854421 112356665555544440 12234
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKAL 440 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L 440 (657)
.++|||||||.+|...+.+++..+|++|||||+.+|+.+||.++|..+..+++|+|||+||||++.
T Consensus 71 ~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-------------- 136 (188)
T PF00009_consen 71 KITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-------------- 136 (188)
T ss_dssp EEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH--------------
T ss_pred ceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh--------------
Confidence 599999999999999999999999999999999999999999999999999999999999999962
Q ss_pred HhhhHHHHHHHHHHHHHHHHH-HHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 441 EQQSKDVEDEFKMRLRNIITQ-FKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 441 ~~q~~~~~~~~~~~~~~ii~~-L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..|...+..+... +...++... ..+++||+||++|.++..++..
T Consensus 137 --------~~~~~~~~~~~~~l~~~~~~~~~---------~~~~vi~~Sa~~g~gi~~Ll~~ 181 (188)
T PF00009_consen 137 --------KELEEIIEEIKEKLLKEYGENGE---------EIVPVIPISALTGDGIDELLEA 181 (188)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTSTTT---------STEEEEEEBTTTTBTHHHHHHH
T ss_pred --------hhHHHHHHHHHHHhccccccCcc---------ccceEEEEecCCCCCHHHHHHH
Confidence 1223333444422 344443310 3689999999999998876653
No 54
>PRK13351 elongation factor G; Reviewed
Probab=99.91 E-value=9.4e-24 Score=246.70 Aligned_cols=265 Identities=23% Similarity=0.292 Sum_probs=179.1
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCccc---c---------------cccCceeeeccceeeecccccchhhccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQ---E---------------GEAGGITQQIGATYFPVENIQKRTEKLNAD 354 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~---~---------------~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~ 354 (657)
.+.|| |+|+||+|||||||+++|+...-. . +..+|+|.......+.+
T Consensus 6 ~~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~------------- 70 (687)
T PRK13351 6 MQIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW------------- 70 (687)
T ss_pred ccccE--EEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-------------
Confidence 45677 999999999999999999743210 0 11233443333333333
Q ss_pred cccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCc
Q 036359 355 AKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNA 434 (657)
Q Consensus 355 ~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~ 434 (657)
+...++|||||||.+|...+.+++..+|++|||||++.++..++..+|..+...++|+|+|+||+|+. ++
T Consensus 71 ---~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~-------~~ 140 (687)
T PRK13351 71 ---DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV-------GA 140 (687)
T ss_pred ---CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC-------CC
Confidence 23469999999999999999999999999999999999999999999999999999999999999986 45
Q ss_pred cHHHHHHhhhHHH-------------------------------------------------HHHHHHHHHHHHHHHHHc
Q 036359 435 PIKKALEQQSKDV-------------------------------------------------EDEFKMRLRNIITQFKEQ 465 (657)
Q Consensus 435 ~~~~~L~~q~~~~-------------------------------------------------~~~~~~~~~~ii~~L~~~ 465 (657)
++..++......+ ..........++..+.+.
T Consensus 141 ~~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 220 (687)
T PRK13351 141 DLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEF 220 (687)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555422110 000011112222222221
Q ss_pred CC-chhhhhhcc---------------ccCcceeEEeccchhhhhhhhhhc-------c---------------------
Q 036359 466 GL-NTELYYKNK---------------EMGKTFSIVPTSAIRHKTMVKKLA-------F--------------------- 501 (657)
Q Consensus 466 G~-~~~~~~~~~---------------~~~~~v~iVpvSA~t~~~L~e~l~-------~--------------------- 501 (657)
.- -.+.|+.+. ..+..+|++..||+++.++..+|. .
T Consensus 221 d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~ 300 (687)
T PRK13351 221 DDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDP 300 (687)
T ss_pred CHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecC
Confidence 10 001111110 014578899999999766554331 1
Q ss_pred --ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeec----ccccccc-c
Q 036359 502 --RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-Q 573 (657)
Q Consensus 502 --~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~ 573 (657)
..++.+.|+.+..+++.|.+++++|++|+|+.||.|. .+.. ...+|..++.. ..++..+ +
T Consensus 301 ~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~------------~~~~i~~i~~~~g~~~~~v~~~~a 368 (687)
T PRK13351 301 DPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG------------KREKVGRLFRLQGNKREEVDRAKA 368 (687)
T ss_pred CCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCC------------CceEeeeEEEEccCCeeECCccCC
Confidence 1357889999999999999999999999999999998 2211 12344444432 3455555 5
Q ss_pred ccEEEecCCCCCCCCCeEEEc
Q 036359 574 GIKITAQGLQDAIAGTSLYVV 594 (657)
Q Consensus 574 gv~i~~~gl~~~~aG~~l~v~ 594 (657)
|-.+++.||+++..|++|+..
T Consensus 369 GdI~~i~gl~~~~~gdtl~~~ 389 (687)
T PRK13351 369 GDIVAVAGLKELETGDTLHDS 389 (687)
T ss_pred CCEEEEECcccCccCCEEeCC
Confidence 877889999999999999743
No 55
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.8e-24 Score=231.86 Aligned_cols=302 Identities=22% Similarity=0.301 Sum_probs=211.2
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCc------------------ccccccCceeeeccceeeecccccchhhccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTN------------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNAD 354 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~------------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~ 354 (657)
..+|| |+|+.|.|+|||||..+++.-. ....+.+|||++.+++++.|.+
T Consensus 37 ~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~----------- 103 (721)
T KOG0465|consen 37 NKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD----------- 103 (721)
T ss_pred hhhcc--cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc-----------
Confidence 35788 9999999999999999987321 1223468899999999988864
Q ss_pred cccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCc
Q 036359 355 AKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNA 434 (657)
Q Consensus 355 ~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~ 434 (657)
+.++|||||||.+|+..+.|.+...|++|+|+|+..|++.||...|++++.+|+|.|.++||||++ ++
T Consensus 104 -----~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm-------Ga 171 (721)
T KOG0465|consen 104 -----YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM-------GA 171 (721)
T ss_pred -----ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc-------CC
Confidence 349999999999999999999999999999999999999999999999999999999999999997 66
Q ss_pred cHHHHHHhhhH------------------------------------------------HHHHHHHHHHHHHHHHHHHcC
Q 036359 435 PIKKALEQQSK------------------------------------------------DVEDEFKMRLRNIITQFKEQG 466 (657)
Q Consensus 435 ~~~~~L~~q~~------------------------------------------------~~~~~~~~~~~~ii~~L~~~G 466 (657)
++..++.+... ++...+...-..++..|....
T Consensus 172 ~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~D 251 (721)
T KOG0465|consen 172 SPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVD 251 (721)
T ss_pred ChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 77777765543 122222222233333332211
Q ss_pred Cc-hhhhhhccc---------------cCcceeEEeccchhhhhh-------hhhhcc----------------------
Q 036359 467 LN-TELYYKNKE---------------MGKTFSIVPTSAIRHKTM-------VKKLAF---------------------- 501 (657)
Q Consensus 467 ~~-~~~~~~~~~---------------~~~~v~iVpvSA~t~~~L-------~e~l~~---------------------- 501 (657)
-. .+.|....+ -+..+|++..||+...++ .+.|+.
T Consensus 252 E~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~ 331 (721)
T KOG0465|consen 252 ETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLS 331 (721)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEec
Confidence 00 011221111 156689999999984332 222210
Q ss_pred ----ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEecccc---chhhccCCCCCceeEEeeeeecccccccc-c
Q 036359 502 ----RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDT---KIQALLTPHPMKELRVKGAYQHHKEIKAA-Q 573 (657)
Q Consensus 502 ----~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~---~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~ 573 (657)
.+||.+..+.+...+. |...+++||+|+|+.||+|+-+..+ +|-.|+.+|... ..+|..+ .
T Consensus 332 ~~~d~~Pfv~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~----------medV~~v~A 400 (721)
T KOG0465|consen 332 PSRDKDPFVALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHAND----------MEDVNEVLA 400 (721)
T ss_pred cCCCCCceeeeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccc----------cchhhhhhc
Confidence 1268888888887776 9999999999999999999922221 122333333211 2344444 5
Q ss_pred ccEEEecCCCCCCCCCeEEEcCCCccHHHHHHHHHHHHHHhhhhhhhcHHHHhhhhccccccEEEEcCccchHHHHHHhc
Q 036359 574 GIKITAQGLQDAIAGTSLYVVGPNDDLEDVKKAAMEEMKSVTEAASEGMKSVMSKVDKTCEGVCMQASTWGSLEALLAFS 653 (657)
Q Consensus 574 gv~i~~~gl~~~~aG~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vkad~~gslea~~~~l 653 (657)
|-.+++-|+ +...|++|.-- .. ...+|+++ .|...-.++-||+.+.-+.+++...|
T Consensus 401 G~I~alfGi-dcasGDTftd~---~~------------------~~~~m~si--~vPePVis~aikP~~k~d~~~fskaL 456 (721)
T KOG0465|consen 401 GDICALFGI-DCASGDTFTDK---QN------------------LALSMESI--HIPEPVISVAIKPVNKKDADNFSKAL 456 (721)
T ss_pred cceeeeecc-ccccCceeccC---cc------------------ccceeeee--ecCCCeeEEEecccccccHHHHHHHH
Confidence 778888899 67789998621 10 12344655 66666678889998888888777766
Q ss_pred c
Q 036359 654 Y 654 (657)
Q Consensus 654 ~ 654 (657)
.
T Consensus 457 ~ 457 (721)
T KOG0465|consen 457 N 457 (721)
T ss_pred H
Confidence 4
No 56
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.91 E-value=3.9e-23 Score=233.08 Aligned_cols=277 Identities=14% Similarity=0.206 Sum_probs=172.1
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCc--cc-cccc--Cceeeeccceeeecccccchhhccc-cccccCCCcEEEEe
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTN--VQ-EGEA--GGITQQIGATYFPVENIQKRTEKLN-ADAKLKVPGLLVVD 366 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~--v~-~~~~--~GiT~~ig~~~~~~~~~~~~~~~~~-~~~~~~~~~l~iID 366 (657)
.+.|| |+|+||+|+|||||+++|+... +. .+.. +|...+.-..+.+.+..++.+.... ....++.+.++|||
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 45777 9999999999999999986321 11 0100 0000000001111111111111111 11223445699999
Q ss_pred CCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHH
Q 036359 367 TPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKD 446 (657)
Q Consensus 367 TPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~ 446 (657)
||||.+|...+.+++..+|++|+|||+..|+..+|..+|..+...++|+|+|+||+|+. ++++...+......
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~-------~~~~~~ll~~i~~~ 159 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD-------IRDPLELLDEVENE 159 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc-------CCCHHHHHHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999999985 22333222211110
Q ss_pred HHHH---------------------------H---------------------------HHHHHHHH---HHHHHc--CC
Q 036359 447 VEDE---------------------------F---------------------------KMRLRNII---TQFKEQ--GL 467 (657)
Q Consensus 447 ~~~~---------------------------~---------------------------~~~~~~ii---~~L~~~--G~ 467 (657)
+... | ...+.... ..+.+. .+
T Consensus 160 l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~ 239 (527)
T TIGR00503 160 LKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEF 239 (527)
T ss_pred hCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence 0000 0 00000000 111110 01
Q ss_pred chhhhhhccccCcceeEEeccchhhhhhhhhhc-------c--------------ccccceeEEEEEe--e-cCceeEEE
Q 036359 468 NTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-------F--------------RNEVQCTILEVKV--C-EGYGTTID 523 (657)
Q Consensus 468 ~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-------~--------------~~~~~~~Vlev~~--~-~g~GtVv~ 523 (657)
....+ .-+..+|++..||+++.++..+|. . ..+|.+.|+.+.. + +..|.+++
T Consensus 240 ~~~~~----~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 240 DLAAF----HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CHHHH----hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 11111 125678999999999776655442 1 1357889999976 6 48999999
Q ss_pred EEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeee----cccccccc-cccEEEecCCCCCCCCCeEEE
Q 036359 524 VVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQ----HHKEIKAA-QGIKITAQGLQDAIAGTSLYV 593 (657)
Q Consensus 524 g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~----~~~~v~~a-~gv~i~~~gl~~~~aG~~l~v 593 (657)
++|++|+|+.|+.|..... .+..++..++. ....+..| +|..+.+.|+.....|++|+.
T Consensus 316 ~RV~sG~l~~g~~v~~~~~-----------~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~ 379 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRT-----------GKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQ 379 (527)
T ss_pred EEEeeeEEcCCCEEEecCC-----------CCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecC
Confidence 9999999999999982111 12345544432 23455555 588889999999999999963
No 57
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.90 E-value=2.6e-23 Score=243.47 Aligned_cols=264 Identities=21% Similarity=0.282 Sum_probs=165.9
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCc----------------ccccccCceeeeccceeeecccccchhhccccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTN----------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAK 356 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~----------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~ 356 (657)
..+|| |+|+||+|||||||+++|+... ......+|+|.......+.+. ..
T Consensus 17 ~~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~------------~~ 82 (720)
T TIGR00490 17 KFIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE------------YE 82 (720)
T ss_pred ccccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe------------ec
Confidence 45788 9999999999999999997421 111122445544333221110 11
Q ss_pred cCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccH
Q 036359 357 LKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 357 ~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~ 436 (657)
.+.+.++|||||||.+|...+.+++..+|++|||||+..|+..+|..+|..+...++|+|+|+||||+.. +++
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-------~~~ 155 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI-------NEL 155 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc-------chh
Confidence 2345699999999999998888999999999999999999999999999999889999999999999963 222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHc-------------------------------------CCchhhhh---hcc
Q 036359 437 KKALEQQSKDVEDEFKMRLRNIITQFKEQ-------------------------------------GLNTELYY---KNK 476 (657)
Q Consensus 437 ~~~L~~q~~~~~~~~~~~~~~ii~~L~~~-------------------------------------G~~~~~~~---~~~ 476 (657)
...+. .+++.|...+..+...+... ++.....+ ...
T Consensus 156 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 231 (720)
T TIGR00490 156 KLTPQ----ELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKED 231 (720)
T ss_pred cCCHH----HHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhc
Confidence 22211 22222322222222222110 00000000 000
Q ss_pred ccCcceeEEeccchhhhhhhhhh------------------------------ccccccceeEEEEEeecCceeEEEEEE
Q 036359 477 EMGKTFSIVPTSAIRHKTMVKKL------------------------------AFRNEVQCTILEVKVCEGYGTTIDVVL 526 (657)
Q Consensus 477 ~~~~~v~iVpvSA~t~~~L~e~l------------------------------~~~~~~~~~Vlev~~~~g~GtVv~g~v 526 (657)
.......++|+..--.+.|...+ ....++.+.|+++..+++.|++++++|
T Consensus 232 ~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV 311 (720)
T TIGR00490 232 KQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRL 311 (720)
T ss_pred cHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEE
Confidence 00000012222110011111111 112357889999999999999999999
Q ss_pred EeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEecCCCCCCCCCeEEE
Q 036359 527 INGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITAQGLQDAIAGTSLYV 593 (657)
Q Consensus 527 ~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~~gl~~~~aG~~l~v 593 (657)
++|+|+.||.|+ .+. ....+|..++.+ ..++..+ +|..+++.|++++..|++|+.
T Consensus 312 ~sGtL~~G~~l~~~~~------------~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~ 372 (720)
T TIGR00490 312 YSGTIRPGMEVYIVDR------------KAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICT 372 (720)
T ss_pred EeCEEcCCCEEEEcCC------------CCeeEeeEEEEeccCCccCccEECCCCEEEEECccccccCceeec
Confidence 999999999997 221 123567777654 3456665 588888889999889999973
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.90 E-value=6.8e-24 Score=210.79 Aligned_cols=154 Identities=29% Similarity=0.329 Sum_probs=119.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc----------------cccccCceeeeccceeeecccccchhhccccccccCCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV----------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPG 361 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v----------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (657)
..|+|+||+|||||||+++|++... ..+..+|+|.+.....+.+. ...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----------------NRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC----------------CeE
Confidence 3599999999999999999985421 12235667666554444332 235
Q ss_pred EEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHH
Q 036359 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKAL 440 (657)
Q Consensus 362 l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L 440 (657)
++|||||||.+|...+.+++..+|++|||||+..|+.+||.+++.++...++| +|+|+||||++. ..
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~------~~------ 134 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD------DE------ 134 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC------cH------
Confidence 89999999999999889999999999999999999999999999999999998 889999999962 11
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh
Q 036359 441 EQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK 497 (657)
Q Consensus 441 ~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e 497 (657)
..+......+...|...|++. ..++|||+||++|.++.+
T Consensus 135 --------~~~~~~~~~i~~~l~~~g~~~----------~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 135 --------ELLELVEMEVRELLSKYGFDG----------DNTPIVRGSALKALEGDD 173 (195)
T ss_pred --------HHHHHHHHHHHHHHHHhcccc----------cCCeEEEeeCccccCCCC
Confidence 111222345667777777763 468999999999887543
No 59
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.89 E-value=7.9e-23 Score=242.68 Aligned_cols=150 Identities=20% Similarity=0.306 Sum_probs=106.8
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCcc----------------cccccCceeeeccceeeecccccchhhcccccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTNV----------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~v----------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~ 355 (657)
+.++|| |+|+||+|||||||+++|+...- ..+..+|+|...+...+.|..............
T Consensus 16 ~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 16 KHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred ccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 556888 99999999999999999974331 222345666655554454431100000000000
Q ss_pred ccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc-CcccCC--
Q 036359 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY-GWKSCK-- 432 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~-~w~~~~-- 432 (657)
..+.+.++|||||||.+|...+.++++.+|++|+|||+..|+..||..+|+++...++|+|||+||||++. +|+-.+
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~ 173 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHH
Confidence 11234589999999999999999999999999999999999999999999999999999999999999974 232111
Q ss_pred -CccHHHHHHhh
Q 036359 433 -NAPIKKALEQQ 443 (657)
Q Consensus 433 -~~~~~~~L~~q 443 (657)
+++|...+.+.
T Consensus 174 ~~~~~~~vi~~i 185 (843)
T PLN00116 174 AYQTFSRVIENA 185 (843)
T ss_pred HHHHHHHHHHHH
Confidence 25555555544
No 60
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=9.4e-23 Score=211.11 Aligned_cols=268 Identities=18% Similarity=0.258 Sum_probs=187.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhcc--------------cccc--------
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKL--------------NADA-------- 355 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~--------------~~~~-------- 355 (657)
..|+|+|..|+|||||++.|+...+++|+.+. .++...++++...+++..+ .|..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrA---Rln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRA---RLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCee---eeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 34899999999999999999988877664321 1222222222222222211 1100
Q ss_pred ccCCCcEEEEeCCCCCcchhhhhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCC
Q 036359 356 KLKVPGLLVVDTPGHESFTNLRSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKN 433 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~ 433 (657)
.-....++|||..||..|...+..|+ .-+++++|||+++.|+...|++||.++.++++||+|+++|||++. .
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~------~ 318 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD------R 318 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc------c
Confidence 01123489999999999998887776 448999999999999999999999999999999999999999985 1
Q ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhh-----------hccccCcceeEEeccchhhhhhhhh----
Q 036359 434 APIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYY-----------KNKEMGKTFSIVPTSAIRHKTMVKK---- 498 (657)
Q Consensus 434 ~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~-----------~~~~~~~~v~iVpvSA~t~~~L~e~---- 498 (657)
..+ ...+..+.+.|...|+....+. .+-..+..+||+.+|.++|+++.-+
T Consensus 319 ~~~---------------~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 319 QGL---------------KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred hhH---------------HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 122 2234445555666665321111 0112257889999999998876432
Q ss_pred --hcc-----------ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeee
Q 036359 499 --LAF-----------RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQ 564 (657)
Q Consensus 499 --l~~-----------~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~ 564 (657)
|+. ..+..+.|.++|.++.+|+|+.|.+.+|.|+.|+.++ ||... ..|.+++|.||+.
T Consensus 384 n~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~D--------G~F~~itV~sI~R 455 (591)
T KOG1143|consen 384 NCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKD--------GTFEKITVGSIRR 455 (591)
T ss_pred hhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCC--------CceeEEEeeeeec
Confidence 111 1246789999999999999999999999999999988 99754 4788999999999
Q ss_pred cccccc---cccccEEEecCCCCCCCCCeEEEcCCC
Q 036359 565 HHKEIK---AAQGIKITAQGLQDAIAGTSLYVVGPN 597 (657)
Q Consensus 565 ~~~~v~---~a~gv~i~~~gl~~~~aG~~l~v~~~~ 597 (657)
++..+. +++...+++...+.+.-..+|+++.++
T Consensus 456 nr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 456 NRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred cccceeeecCccceeeeccCCCccchhcceEEeecC
Confidence 887665 445677777666665433344444443
No 61
>PRK12740 elongation factor G; Reviewed
Probab=99.89 E-value=6.1e-22 Score=231.00 Aligned_cols=256 Identities=25% Similarity=0.280 Sum_probs=169.4
Q ss_pred EecCCCChhhhhhhhcCCcc---c---------------ccccCceeeeccceeeecccccchhhccccccccCCCcEEE
Q 036359 303 LGHVDAGKTRLLDCIRGTNV---Q---------------EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLV 364 (657)
Q Consensus 303 iG~vdsGKSTLl~~L~~~~v---~---------------~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 364 (657)
+||+|||||||+++|+...- . ..+.+|+|.......+.+. .+.++|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEEEE
Confidence 69999999999999953221 0 1123455554444444432 345999
Q ss_pred EeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhh
Q 036359 365 VDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQS 444 (657)
Q Consensus 365 IDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~ 444 (657)
||||||.+|...+.+++..+|++|+|||++.+...++..+|..+...++|+|+|+||+|+.. +.+...+....
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~~~~~~~l~ 137 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG-------ADFFRVLAQLQ 137 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHHHHHHHH
Confidence 99999999988888899999999999999999999999999999999999999999999863 23332222211
Q ss_pred HHH----------------------------------------------HHHHHHHHHHHHHHHHHc------------C
Q 036359 445 KDV----------------------------------------------EDEFKMRLRNIITQFKEQ------------G 466 (657)
Q Consensus 445 ~~~----------------------------------------------~~~~~~~~~~ii~~L~~~------------G 466 (657)
..+ ..........++..+.+. .
T Consensus 138 ~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~ 217 (668)
T PRK12740 138 EKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEE 217 (668)
T ss_pred HHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCC
Confidence 110 000001111222222111 0
Q ss_pred Cchhhhhhc----cccCcceeEEeccchhhhhhhhhhc-------c----------------------ccccceeEEEEE
Q 036359 467 LNTELYYKN----KEMGKTFSIVPTSAIRHKTMVKKLA-------F----------------------RNEVQCTILEVK 513 (657)
Q Consensus 467 ~~~~~~~~~----~~~~~~v~iVpvSA~t~~~L~e~l~-------~----------------------~~~~~~~Vlev~ 513 (657)
+..+..+.. -..+..+|++.+||+++.++..+|. . ..++.+.|+.++
T Consensus 218 l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~ 297 (668)
T PRK12740 218 LSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTM 297 (668)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEee
Confidence 111110000 0114568999999999777655331 1 124778999999
Q ss_pred eecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeee----cccccccc-cccEEEecCCCCCCC
Q 036359 514 VCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQ----HHKEIKAA-QGIKITAQGLQDAIA 587 (657)
Q Consensus 514 ~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~----~~~~v~~a-~gv~i~~~gl~~~~a 587 (657)
.+++.|.+++++|++|+|+.||.|. ++.. +..+|..++. +..++..+ +|-.+++.|++.+..
T Consensus 298 ~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~------------~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~ 365 (668)
T PRK12740 298 DDPFVGKLSLVRVYSGTLKKGDTLYNSGTG------------KKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAAT 365 (668)
T ss_pred ecCCCCcEEEEEEeeeEEcCCCEEEeCCCC------------CcEEecceeeecCCCccccCccCCCCEEEEeccCccCC
Confidence 9999999999999999999999998 4321 1233333332 24555555 587777789998999
Q ss_pred CCeEEE
Q 036359 588 GTSLYV 593 (657)
Q Consensus 588 G~~l~v 593 (657)
|++|+.
T Consensus 366 Gdtl~~ 371 (668)
T PRK12740 366 GDTLCD 371 (668)
T ss_pred CCEEeC
Confidence 999974
No 62
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.2e-23 Score=217.77 Aligned_cols=271 Identities=23% Similarity=0.300 Sum_probs=191.2
Q ss_pred hhhhccCCCCeEEEEecCCCChhhhhhhhcCC--------ccc----------ccccCceeeeccceeeecccccchhhc
Q 036359 289 KQAEENLRSPICCILGHVDAGKTRLLDCIRGT--------NVQ----------EGEAGGITQQIGATYFPVENIQKRTEK 350 (657)
Q Consensus 289 ~~~~~~~r~p~V~viG~vdsGKSTLl~~L~~~--------~v~----------~~~~~GiT~~ig~~~~~~~~~~~~~~~ 350 (657)
......+|| |+||.|+|+||||...+|+.- .+. ..+.+|||.+..+..|.|..
T Consensus 31 ~p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg------- 101 (753)
T KOG0464|consen 31 NPAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG------- 101 (753)
T ss_pred CCchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc-------
Confidence 334456899 999999999999999998731 122 23568899888887777764
Q ss_pred cccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCccc
Q 036359 351 LNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKS 430 (657)
Q Consensus 351 ~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~ 430 (657)
+.+++||||||.+|.-.+.|.+++.|++|.|+|++.|+.+||+..|++...+++|-++++||||.+
T Consensus 102 ---------~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~----- 167 (753)
T KOG0464|consen 102 ---------HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL----- 167 (753)
T ss_pred ---------ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh-----
Confidence 459999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccHHHHHHhhhHH-------------------------------------------------------HHHHHHHHH
Q 036359 431 CKNAPIKKALEQQSKD-------------------------------------------------------VEDEFKMRL 455 (657)
Q Consensus 431 ~~~~~~~~~L~~q~~~-------------------------------------------------------~~~~~~~~~ 455 (657)
.++|..++...... +...+....
T Consensus 168 --~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~k 245 (753)
T KOG0464|consen 168 --AANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAK 245 (753)
T ss_pred --hhhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHH
Confidence 45555544433221 111111111
Q ss_pred HHHHHHHHHcC--Cch---hhhhhccc----------------cCcceeEEeccchhhhhhhhhhc--------------
Q 036359 456 RNIITQFKEQG--LNT---ELYYKNKE----------------MGKTFSIVPTSAIRHKTMVKKLA-------------- 500 (657)
Q Consensus 456 ~~ii~~L~~~G--~~~---~~~~~~~~----------------~~~~v~iVpvSA~t~~~L~e~l~-------------- 500 (657)
..++.++.... |.. +.|..|-+ ....++|...||++..++.-+|+
T Consensus 246 nal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeerny 325 (753)
T KOG0464|consen 246 NALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNY 325 (753)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcch
Confidence 12222221110 000 00111100 02446778888888655543321
Q ss_pred -----cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE---eccccchhhccCCCCCceeEEeeeeecccccccc
Q 036359 501 -----FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV---EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA 572 (657)
Q Consensus 501 -----~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~---gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a 572 (657)
|.+.+....+.|..++.+|.+++.++|+|+|+.+-.|. |.+..+|-.||.|.... |..|...
T Consensus 326 eflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade----------~~~i~ql 395 (753)
T KOG0464|consen 326 EFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADE----------HREIEQL 395 (753)
T ss_pred HHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhh----------hhhhhhc
Confidence 23456677788889999999999999999999999988 88888998999887543 3333322
Q ss_pred --cccEEEecCCCCCCCCCeEEEcC
Q 036359 573 --QGIKITAQGLQDAIAGTSLYVVG 595 (657)
Q Consensus 573 --~gv~i~~~gl~~~~aG~~l~v~~ 595 (657)
-++.+. .||.+...|++++..+
T Consensus 396 sagnialt-~glk~tatgdtivask 419 (753)
T KOG0464|consen 396 SAGNIALT-AGLKHTATGDTIVASK 419 (753)
T ss_pred ccccEEEE-ecceeeccCCeEEecc
Confidence 234443 4999999999987553
No 63
>PTZ00416 elongation factor 2; Provisional
Probab=99.87 E-value=2e-21 Score=230.41 Aligned_cols=126 Identities=22% Similarity=0.316 Sum_probs=98.6
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCc----------------ccccccCceeeeccceeeecccccchhhcccccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTN----------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~----------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~ 355 (657)
+..+|| |+|+||+|||||||+++|+... ...+..+|||.+.+...+.|..... ...
T Consensus 16 ~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~------~~~ 87 (836)
T PTZ00416 16 PDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLE------DGD 87 (836)
T ss_pred ccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccc------ccc
Confidence 456788 9999999999999999998532 1123346666665555554432100 000
Q ss_pred ccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
....+.|+|||||||.+|...+.+++..+|++|||||+..|+.+||..+|.++...++|+|+|+||||+.
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 0113458999999999999999999999999999999999999999999999999999999999999996
No 64
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=2e-21 Score=196.46 Aligned_cols=154 Identities=26% Similarity=0.424 Sum_probs=110.5
Q ss_pred EEEEecCCCChhhhhhhhcCCcc-------------------------------cccccCceeeeccceeeecccccchh
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPVENIQKRT 348 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v-------------------------------~~~~~~GiT~~ig~~~~~~~~~~~~~ 348 (657)
|+|+||+|||||||+++|+...- ..++.+|+|.++....+.+
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~------- 74 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET------- 74 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-------
Confidence 89999999999999999973210 1112344554444444433
Q ss_pred hccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccC-------CCchhHHHHHHHHHhcCC-ceEEEec
Q 036359 349 EKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD-------GIKPQTIESLDLLKERSV-DFIIALS 420 (657)
Q Consensus 349 ~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~-------g~~~qt~e~l~~l~~~~v-PiIvvlN 420 (657)
+.+.++|||||||.+|...+..+++.+|++|||||+.+ +...++.+++.++..+++ |+|||+|
T Consensus 75 ---------~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvN 145 (219)
T cd01883 75 ---------EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVN 145 (219)
T ss_pred ---------CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEE
Confidence 34569999999999999888889999999999999998 567899999988888884 6999999
Q ss_pred cccccc-CcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh
Q 036359 421 KADKLY-GWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK 497 (657)
Q Consensus 421 KiDl~~-~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e 497 (657)
|+|+.. .|.. ..|......+...|...|+.. ..++|||+||++|.+|.+
T Consensus 146 K~Dl~~~~~~~------------------~~~~~i~~~l~~~l~~~~~~~----------~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 146 KMDDVTVNWSE------------------ERYDEIKKELSPFLKKVGYNP----------KDVPFIPISGLTGDNLIE 195 (219)
T ss_pred ccccccccccH------------------HHHHHHHHHHHHHHHHcCCCc----------CCceEEEeecCcCCCCCc
Confidence 999963 1211 112222233333455544432 358999999999998875
No 65
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=6.8e-21 Score=182.13 Aligned_cols=160 Identities=52% Similarity=0.761 Sum_probs=120.3
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
|+|+|+|++|+|||||+++|....+.....+++|++++.+.+.+.. .....++|||||||..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 6799999999999999999998887766667788887766665431 012358999999999999888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHH
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRN 457 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ 457 (657)
..++..+|++|+|+|++++...++...+..+...++|+|+|+||+|+.. ... ..
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-------~~~-------------------~~ 121 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPN-------ANP-------------------ER 121 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccc-------ccH-------------------HH
Confidence 8899999999999999999889999999988889999999999999862 110 01
Q ss_pred HHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 458 IITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 458 ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
+...+...+.... ..++..++++|+|+.++.++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 122 VKNELSELGLQGE-----DEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred HHHHHHHhhcccc-----ccccCcCcEEEeecccCCCHHHHHHH
Confidence 1111111111000 01234578999999999998876554
No 66
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=5.6e-21 Score=193.90 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=120.9
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccc--------------cCceeeeccceeeecccccc-------hhhcc-cccccc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGE--------------AGGITQQIGATYFPVENIQK-------RTEKL-NADAKL 357 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~--------------~~GiT~~ig~~~~~~~~~~~-------~~~~~-~~~~~~ 357 (657)
|+|+||+++|||||+++|....+..+. .+|+|..+....+.++.... .+... ......
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 789999999999999999976554332 24555433332222221000 00000 001112
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCC--CCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCcc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPG--LCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAP 435 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~--~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~ 435 (657)
..+.++|||||||.+|...+.+++. .+|++|+|||+.+|+.+++.+++.++...++|+|+|+||+|+.. .
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~------~-- 153 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP------A-- 153 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC------H--
Confidence 3456999999999999888877775 79999999999999999999999999999999999999999863 1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhh-----------hhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 436 IKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELY-----------YKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 436 ~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~-----------~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+..+...|...|+....+ ..+..++..+|||++|+++|.++.++..+
T Consensus 154 -------------~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 154 -------------NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred -------------HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 112223334444454444332111 12223456789999999999988776543
No 67
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=1.1e-20 Score=179.39 Aligned_cols=155 Identities=30% Similarity=0.429 Sum_probs=112.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+|+|+|++|+|||||+++|++.. +.....+++|..++...+.+.. ...+.|||||||..|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---------------GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---------------CcEEEEEECCChHHHHH
Confidence 58999999999999999998643 3333345677666655544321 13489999999999987
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCC-ceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSV-DFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~v-PiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.+..++..+|++|+|+|+++++.+++.+++..+...++ |+|+|+||+|+.. .. .+...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-------~~--------------~~~~~ 125 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD-------ED--------------WLELV 125 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC-------HH--------------HHHHH
Confidence 77778899999999999999888999998887777777 8999999999963 10 00111
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+...++ ..++++|+||+++.++.+.+..
T Consensus 126 ~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~l~~~ 160 (164)
T cd04171 126 EEEIRELLAGTFL------------ADAPIFPVSAVTGEGIEELKEY 160 (164)
T ss_pred HHHHHHHHHhcCc------------CCCcEEEEeCCCCcCHHHHHHH
Confidence 1233333332211 2368999999999998876543
No 68
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=1.3e-20 Score=189.01 Aligned_cols=153 Identities=25% Similarity=0.401 Sum_probs=108.6
Q ss_pred EEEEecCCCChhhhhhhhcCCcc--c-----------------------------ccccCceeeeccceeeecccccchh
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNV--Q-----------------------------EGEAGGITQQIGATYFPVENIQKRT 348 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v--~-----------------------------~~~~~GiT~~ig~~~~~~~~~~~~~ 348 (657)
|+|+||+|||||||+++|++..- . .++.+|+|.+....++.+
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~------- 74 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST------- 74 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-------
Confidence 89999999999999999975321 1 011244454444433333
Q ss_pred hccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccC
Q 036359 349 EKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYG 427 (657)
Q Consensus 349 ~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~ 427 (657)
+...++|||||||.+|...+..++..+|++|||||++.|+..++..++.++...++| +|+|+||+|+..
T Consensus 75 ---------~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~- 144 (208)
T cd04166 75 ---------PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD- 144 (208)
T ss_pred ---------CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc-
Confidence 334699999999999987777888999999999999999999999888888888876 788999999863
Q ss_pred cccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhh
Q 036359 428 WKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKL 499 (657)
Q Consensus 428 w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l 499 (657)
|.. ..+......+...+...|+. .+++||+||+++.++.+..
T Consensus 145 ~~~------------------~~~~~i~~~~~~~~~~~~~~------------~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 145 YSE------------------EVFEEIVADYLAFAAKLGIE------------DITFIPISALDGDNVVSRS 186 (208)
T ss_pred CCH------------------HHHHHHHHHHHHHHHHcCCC------------CceEEEEeCCCCCCCccCC
Confidence 210 01111222333334444432 3679999999998887643
No 69
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=2.6e-20 Score=183.98 Aligned_cols=173 Identities=25% Similarity=0.341 Sum_probs=117.0
Q ss_pred eEEEEecCCCChhhhhhhhcCC-------cccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGT-------NVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~-------~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
.|+|+||+|||||||+++|++. .......+|+|..++...+.+........ ........+.++|||||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRE--LINPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccc--cccccccCceEEEEECCCcH
Confidence 4999999999999999999862 22234457888887776666542110000 00011123569999999998
Q ss_pred cchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 372 SFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 372 ~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
.|......++..+|++|+|+|+.++...++.+++..+...++|+|+|+||+|+.. ...+...+.. +.
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~------~~~~~~~~~~----~~--- 146 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP------EEERERKIEK----MK--- 146 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC------HHHHHHHHHH----HH---
Confidence 8877777788899999999999999999998888877778999999999999963 1111111110 11
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
..+...+...++ ..++++|+||+++.++.+++.+.
T Consensus 147 ----~~l~~~~~~~~~------------~~~~vi~iSa~~g~gi~~L~~~l 181 (192)
T cd01889 147 ----KKLQKTLEKTRF------------KNSPIIPVSAKPGGGEAELGKDL 181 (192)
T ss_pred ----HHHHHHHHhcCc------------CCCCEEEEeccCCCCHHHHHHHH
Confidence 111111222221 24789999999999998876653
No 70
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=99.82 E-value=1.9e-20 Score=166.59 Aligned_cols=104 Identities=59% Similarity=0.905 Sum_probs=98.9
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-----eccccchhhccCCCCCceeEEeeeeecccccccccccEEEe
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-----EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQGIKITA 579 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-----gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~gv~i~~ 579 (657)
+.|+|+|++.++|.|++++++|++|+|++||+|+ ||+.|+||+||+|+|++++|+++-|.+++.+.+|+|++|.+
T Consensus 1 ~~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CcEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 3689999999999999999999999999999999 88889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCeEEEcCCCccHHHHHHHHH
Q 036359 580 QGLQDAIAGTSLYVVGPNDDLEDVKKAAM 608 (657)
Q Consensus 580 ~gl~~~~aG~~l~v~~~~~~~~~~~~~~~ 608 (657)
.||+++.+|+.|+++.++++++.+.++++
T Consensus 81 ~gL~~v~aG~~~~vv~~e~~a~~~~~~~~ 109 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELKEEVM 109 (110)
T ss_pred CCCccccCCCEEEEECCHHHHHHHHHHHh
Confidence 99999999999999999989888887654
No 71
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=3.1e-20 Score=185.56 Aligned_cols=170 Identities=23% Similarity=0.257 Sum_probs=117.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccc-hhh------------cccc----ccccC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQK-RTE------------KLNA----DAKLK 358 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~-~~~------------~~~~----~~~~~ 358 (657)
+|+|+||+|||||||+.+|.+.. ......+|+|...++..+.+..... ++. ...+ .....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 49999999999999999998763 2344567888877777665531100 000 0000 00011
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-CchhHHHHHHHHHhcCC-ceEEEecccccccCcccCCCccH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-IKPQTIESLDLLKERSV-DFIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-~~~qt~e~l~~l~~~~v-PiIvvlNKiDl~~~w~~~~~~~~ 436 (657)
...++|||||||.+|...+.+++..+|++|||||+.++ ..+++.++|..+...++ |+|||+||+|+.. ...+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~------~~~~ 155 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK------EEQA 155 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC------HHHH
Confidence 25699999999999999999999999999999999984 67899999988887787 5899999999963 1111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 437 KKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 437 ~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+..+...+.... ...+++||+||+++.++.+++.+
T Consensus 156 ---------------~~~~~~i~~~~~~~~------------~~~~~i~~vSA~~g~gi~~L~~~ 193 (203)
T cd01888 156 ---------------LENYEQIKKFVKGTI------------AENAPIIPISAQLKYNIDVLLEY 193 (203)
T ss_pred ---------------HHHHHHHHHHHhccc------------cCCCcEEEEeCCCCCCHHHHHHH
Confidence 111122222222211 12468999999999998876654
No 72
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.5e-19 Score=191.70 Aligned_cols=258 Identities=19% Similarity=0.287 Sum_probs=164.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC--Ccc--------------------cccccCceeeeccceeeecccccchhhccc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG--TNV--------------------QEGEAGGITQQIGATYFPVENIQKRTEKLN 352 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~--~~v--------------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~ 352 (657)
-|+ ++||-|+|+|||||...|+- ..+ ..+..+||+...+.-.|++.
T Consensus 12 RRT--FAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~---------- 79 (528)
T COG4108 12 RRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA---------- 79 (528)
T ss_pred hcc--eeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC----------
Confidence 455 99999999999999999862 111 11123555554444444443
Q ss_pred cccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCC
Q 036359 353 ADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCK 432 (657)
Q Consensus 353 ~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~ 432 (657)
.+.++|+|||||++|+.-+-|-+..+|.+|+|||+..|+.+||+..+..|+..++|||-++||+|+..
T Consensus 80 ------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~------ 147 (528)
T COG4108 80 ------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG------ 147 (528)
T ss_pred ------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc------
Confidence 34599999999999998888889999999999999999999999999999999999999999999963
Q ss_pred CccHHHHHHhhhHH-----------------------------------------------------HH----HHHHHHH
Q 036359 433 NAPIKKALEQQSKD-----------------------------------------------------VE----DEFKMRL 455 (657)
Q Consensus 433 ~~~~~~~L~~q~~~-----------------------------------------------------~~----~~~~~~~ 455 (657)
.+..+.|...-.. +. +.+...+
T Consensus 148 -rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 226 (528)
T COG4108 148 -RDPLELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQL 226 (528)
T ss_pred -CChHHHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHH
Confidence 2222222221110 00 0010111
Q ss_pred HHHHHHHHHcC--CchhhhhhccccCcceeEEeccchhhhhhhhhhc----c-----------------ccccceeEEEE
Q 036359 456 RNIITQFKEQG--LNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA----F-----------------RNEVQCTILEV 512 (657)
Q Consensus 456 ~~ii~~L~~~G--~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~----~-----------------~~~~~~~Vlev 512 (657)
.+=+..+...| |+.+.+.. |...|++..||++.-++...|. + ...|.+.|+.+
T Consensus 227 ~ee~EL~~~a~~~Fd~~~fl~----G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKI 302 (528)
T COG4108 227 REELELVQGAGNEFDLEAFLA----GELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKI 302 (528)
T ss_pred HHHHHHHHhhccccCHHHHhc----CCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEE
Confidence 11111111111 22232222 5778999999999655544332 1 22366777776
Q ss_pred E---eecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeee----cccccccc-cccEEEecCCCC
Q 036359 513 K---VCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQ----HHKEIKAA-QGIKITAQGLQD 584 (657)
Q Consensus 513 ~---~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~----~~~~v~~a-~gv~i~~~gl~~ 584 (657)
. .-+.+-.+++.+|.||.+..|..+.-+..+ +.+++...+. .+..+..| +|..|-+.+-..
T Consensus 303 QANMDp~HRDRIAFmRv~SGkferGMkv~h~rtG-----------K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~ 371 (528)
T COG4108 303 QANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTG-----------KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGT 371 (528)
T ss_pred EcCCCcccccceeEEEeccccccCCceeeeeecC-----------CceEecchHhhhhhhhhhhhhccCCCeEeccCCCc
Confidence 3 334688999999999999999988722222 2233322211 23445555 576664444444
Q ss_pred CCCCCeEE
Q 036359 585 AIAGTSLY 592 (657)
Q Consensus 585 ~~aG~~l~ 592 (657)
...||+|.
T Consensus 372 ~~IGDT~t 379 (528)
T COG4108 372 IQIGDTFT 379 (528)
T ss_pred eeecceee
Confidence 67888876
No 73
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.82 E-value=3e-20 Score=188.14 Aligned_cols=122 Identities=30% Similarity=0.437 Sum_probs=92.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc----------------cccccCceeeeccceeeecccccchhhccccccccCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV----------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKV 359 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v----------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 359 (657)
|| |+|+||+|||||||+++|+...- ..++.+|+|.......+.+...... ...-..
T Consensus 1 RN--vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~ 72 (222)
T cd01885 1 RN--ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNE 72 (222)
T ss_pred Ce--EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCc
Confidence 56 99999999999999999974321 1123455665544433333211000 000113
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
+.++|||||||.+|...+..++..+|++|||||+..|+..||..++..+...++|+|+|+||||+.
T Consensus 73 ~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 73 YLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred eEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 458999999999999999999999999999999999999999999999998999999999999986
No 74
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.81 E-value=6.9e-20 Score=181.25 Aligned_cols=155 Identities=28% Similarity=0.350 Sum_probs=107.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC--Cccccc--------------ccCceeeeccceeeecccccchhhccccccccC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG--TNVQEG--------------EAGGITQQIGATYFPVENIQKRTEKLNADAKLK 358 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~--~~v~~~--------------~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~ 358 (657)
+|+ |+|+|++++|||||+++|++ ..+... ...|+|.......+. .+
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~----------------~~ 63 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT----------------YK 63 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE----------------EC
Confidence 566 99999999999999999986 223211 112333222211121 12
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
...++|||||||.+|..++..++..+|++|+|||++++..+++..++..+...++|+|+|+||+|+.. ..+..
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~-------~~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD-------ARPEE 136 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHH
Confidence 34589999999999999999999999999999999998888888878877778999999999999963 11111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK 497 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e 497 (657)
.+..+...+...+.... ...++++++||++|.++.+
T Consensus 137 ---------------~~~~~~~~~~~~~~~~~--------~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 137 ---------------VVDEVFDLFIELGATEE--------QLDFPVLYASAKNGWASLN 172 (194)
T ss_pred ---------------HHHHHHHHHHHhCCccc--------cCccCEEEeehhccccccc
Confidence 12233333333332211 1246899999999877644
No 75
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=1e-19 Score=186.21 Aligned_cols=121 Identities=31% Similarity=0.381 Sum_probs=94.1
Q ss_pred EEEEecCCCChhhhhhhhcCCcccc------------------cccCceeeeccceeeecccccchhhccccccccCCCc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQE------------------GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPG 361 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~------------------~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (657)
|+|+||+|+|||||+++|+...-.. ...+|+|.......+. ++...
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~----------------~~~~~ 65 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ----------------WEDTK 65 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE----------------ECCEE
Confidence 8999999999999999998642110 1122333332222222 23346
Q ss_pred EEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHH
Q 036359 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALE 441 (657)
Q Consensus 362 l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~ 441 (657)
++|||||||.+|...+.++++.+|++|||||+.+|+..++..+|..+...++|+|+|+||+|+. ++++...+.
T Consensus 66 i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~-------~a~~~~~~~ 138 (237)
T cd04168 66 VNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA-------GADLEKVYQ 138 (237)
T ss_pred EEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc-------CCCHHHHHH
Confidence 9999999999999998999999999999999999999999999999999999999999999985 455555555
Q ss_pred hh
Q 036359 442 QQ 443 (657)
Q Consensus 442 ~q 443 (657)
..
T Consensus 139 ~i 140 (237)
T cd04168 139 EI 140 (237)
T ss_pred HH
Confidence 43
No 76
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.79 E-value=2e-19 Score=187.45 Aligned_cols=110 Identities=30% Similarity=0.322 Sum_probs=92.4
Q ss_pred EEEEecCCCChhhhhhhhcCCc------------------ccccccCceeeeccceeeecccccchhhccccccccCCCc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTN------------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPG 361 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~------------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (657)
|+|+||+|||||||+++|+... ....+.+|+|.+....++.|. .+.
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----------------~~~ 65 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK----------------DHR 65 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC----------------CEE
Confidence 8999999999999999997321 112234566666555555553 345
Q ss_pred EEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 362 l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
++|||||||.+|...+.++++.+|++|||||+..|+..+|..+|..+...++|+|+|+||+|+.
T Consensus 66 i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 66 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 77
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.79 E-value=2.3e-19 Score=173.92 Aligned_cols=117 Identities=28% Similarity=0.398 Sum_probs=86.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc--ccc-------------cccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~--v~~-------------~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
|| |+++|+++||||||+++|++.. +.. ...+|+|.......+.+... .....
T Consensus 1 rn--i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-----------~~~~~ 67 (179)
T cd01890 1 RN--FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-----------DGQEY 67 (179)
T ss_pred Cc--EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-----------CCCcE
Confidence 56 9999999999999999998642 110 11223333222222211100 01123
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.++|||||||.+|..++.+++..+|++|||+|++++...++..+|..+...++|+|+|+||+|+.
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 48899999999999998889999999999999999888888888887777899999999999985
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=9e-19 Score=170.26 Aligned_cols=164 Identities=31% Similarity=0.397 Sum_probs=112.0
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccc----------------cCceeeeccceeeecccccchhhccccccccCCCcEE
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGE----------------AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLL 363 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~----------------~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 363 (657)
|+|+|++|+|||||+++|++....... .+|+|.......+. +....++
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 65 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE----------------WPDRRVN 65 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe----------------eCCEEEE
Confidence 899999999999999999877654322 12223222222221 1224589
Q ss_pred EEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhh
Q 036359 364 VVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQ 443 (657)
Q Consensus 364 iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q 443 (657)
||||||+.+|...+..++..+|++|+|+|+.++...+..+.+..+...++|+++|+||+|+.. ...+
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~------~~~~------- 132 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG------EEDL------- 132 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc------hhcH-------
Confidence 999999999988888888999999999999999988888888888888999999999999963 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 444 SKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 444 ~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
......+...+...++.... -........++++|+||+++.++.+.+..
T Consensus 133 --------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~ 181 (189)
T cd00881 133 --------EEVLREIKELLGLIGFISTK-EEGTRNGLLVPIVPGSALTGIGVEELLEA 181 (189)
T ss_pred --------HHHHHHHHHHHccccccchh-hhhcccCCcceEEEEecccCcCHHHHHHH
Confidence 11122333334333321000 00000124688999999999988876543
No 79
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.75 E-value=4e-18 Score=171.45 Aligned_cols=117 Identities=26% Similarity=0.390 Sum_probs=88.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccccc-------------------ccCceeeeccceeeecccccchhhccccccc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEG-------------------EAGGITQQIGATYFPVENIQKRTEKLNADAK 356 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~-------------------~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~ 356 (657)
|| |+|+||+|||||||+++|+....... ..+|+|.......+.+... .
T Consensus 1 rn--v~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-----------~ 67 (213)
T cd04167 1 RN--VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-----------K 67 (213)
T ss_pred Cc--EEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-----------C
Confidence 56 99999999999999999986443211 1233333332222222110 0
Q ss_pred cCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 357 LKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 357 ~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
-..+.++|||||||.+|...+..++..+|++|+|||+.++...++..++..+...++|+|+|+||+|++
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 112358999999999999888889999999999999999998888888888877889999999999986
No 80
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=2.5e-18 Score=178.98 Aligned_cols=129 Identities=24% Similarity=0.296 Sum_probs=89.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCcee--eeccceeeecc---cccchhhccc-cccccCCCcEEEEeCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGIT--QQIGATYFPVE---NIQKRTEKLN-ADAKLKVPGLLVVDTP 368 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT--~~ig~~~~~~~---~~~~~~~~~~-~~~~~~~~~l~iIDTP 368 (657)
.|| |+|+||+|+|||||+++|+...-...+.+.+. ...+.+...+. ..++.+.... ....++...++|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 577 99999999999999999985321111111000 00111111111 1111111110 1123344569999999
Q ss_pred CCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 369 GHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 369 Gh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
||.+|...+..++..+|++|+|||++.|+..++..+|.++...++|+|+|+||+|+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 999999888888999999999999999999999999998888999999999999985
No 81
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=4.8e-18 Score=162.26 Aligned_cols=110 Identities=22% Similarity=0.284 Sum_probs=83.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh--
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL-- 376 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~-- 376 (657)
.|+++|.+|+|||||+|+|++.+...+..+|+|.......+.+.. ..+.||||||..++...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~----------------~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD----------------QQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT----------------EEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC----------------ceEEEEECCCcccCCCCCc
Confidence 589999999999999999999998888889999877665555433 24899999997554321
Q ss_pred ----hhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 377 ----RSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ----~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
...++ ..+|++|+|+|+++ .......+.++..+|+|+|+|+||+|...
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 12222 57999999999998 34556666778899999999999999863
No 82
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=1e-17 Score=163.60 Aligned_cols=149 Identities=24% Similarity=0.355 Sum_probs=101.5
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcc-c-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNV-Q-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v-~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
..+.+.|+|+|++|+|||||+++|++..+ . .....|.|+++..+.+ + ..+.||||||+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~~~liDtpG~~ 75 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-----------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-----------------CcEEEEeCCCCc
Confidence 35667799999999999999999998752 1 2233444544332211 1 148999999963
Q ss_pred ----------cchhhhh---cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHH
Q 036359 372 ----------SFTNLRS---WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 372 ----------~f~~~~~---~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
.|..+.. +....+|++|+|+|++.++..++...+..+...++|+|+|+||+|+.. ..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~------~~~--- 146 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK------KSE--- 146 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC------HHH---
Confidence 2322222 223457899999999999999998888888889999999999999963 111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhh
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTM 495 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L 495 (657)
+...+..+...|...| ..+++|++||++|.++
T Consensus 147 ------------~~~~~~~i~~~l~~~~-------------~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 147 ------------LNKQLKKIKKALKKDA-------------DDPSVQLFSSLKKTGI 178 (179)
T ss_pred ------------HHHHHHHHHHHHhhcc-------------CCCceEEEECCCCCCC
Confidence 1112233434443321 3468999999999875
No 83
>COG1159 Era GTPase [General function prediction only]
Probab=99.72 E-value=2.1e-17 Score=169.79 Aligned_cols=117 Identities=23% Similarity=0.317 Sum_probs=88.0
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
.+++.+|+|+|.+|+|||||+|+|+|.++.- +.-...|.+.-...+. ...+++.|+||||...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t----------------~~~~QiIfvDTPGih~ 66 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT----------------TDNAQIIFVDTPGIHK 66 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE----------------cCCceEEEEeCCCCCC
Confidence 4688899999999999999999999998651 2222233322111222 2235699999999543
Q ss_pred ch--------hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 373 FT--------NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 373 f~--------~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
-. ......+..+|+++||||+++++.+.....+..++..+.|+|+++||+|+..
T Consensus 67 pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 67 PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred cchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 21 2234567889999999999999999888888888888899999999999974
No 84
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=7.2e-18 Score=171.30 Aligned_cols=209 Identities=23% Similarity=0.327 Sum_probs=149.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccc------hhhc-c--------c-----c
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQK------RTEK-L--------N-----A 353 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~------~~~~-~--------~-----~ 353 (657)
...|+.+||+-|||||++.+|.+-. |..+-.+.||+.+|+....+..-.. .|.. . . .
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 3449999999999999999999865 5566678899998875443321110 0100 0 0 0
Q ss_pred ccccC-CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-CchhHHHHHHHHHhcCCc-eEEEecccccccCccc
Q 036359 354 DAKLK-VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-IKPQTIESLDLLKERSVD-FIIALSKADKLYGWKS 430 (657)
Q Consensus 354 ~~~~~-~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~ 430 (657)
...++ ..++.|+|||||.-+...+..|+...|.++|+|.+++. .+|||-+||.....+.+. +|++-||+|++.+
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e--- 194 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE--- 194 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH---
Confidence 00111 24689999999998888899999999999999999985 589999999988888877 8899999999841
Q ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhh-------hhhhc---
Q 036359 431 CKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTM-------VKKLA--- 500 (657)
Q Consensus 431 ~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L-------~e~l~--- 500 (657)
. .+++ ....|..++... + ....||||+||.-..++ ..+++
T Consensus 195 --~----~A~e------------q~e~I~kFi~~t--~----------ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 195 --S----QALE------------QHEQIQKFIQGT--V----------AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred --H----HHHH------------HHHHHHHHHhcc--c----------cCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 0 1111 123343333321 1 24679999999875444 33332
Q ss_pred --cccccceeEEEEEeecC--------ceeEEEEEEEeeeecCCCEEE
Q 036359 501 --FRNEVQCTILEVKVCEG--------YGTTIDVVLINGVLHEGDKIV 538 (657)
Q Consensus 501 --~~~~~~~~Vlev~~~~g--------~GtVv~g~v~~G~Lk~Gd~I~ 538 (657)
+..+.++.|+.+|.+.- .|-|+.|.+..|.|++||.|.
T Consensus 245 Rdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IE 292 (466)
T KOG0466|consen 245 RDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIE 292 (466)
T ss_pred cccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEE
Confidence 35567889999998864 566899999999999999987
No 85
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=4.6e-17 Score=169.54 Aligned_cols=124 Identities=23% Similarity=0.275 Sum_probs=87.1
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecc---cccchhhccc-cccccCCCcEEEEeCCCCCcchh
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVE---NIQKRTEKLN-ADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~---~~~~~~~~~~-~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
|+|+||+|+|||||+++|++......+.+.+. .|.+...+. ..+..+.... ....++.+.++|||||||.+|..
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVG 79 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHH
Confidence 89999999999999999975321111111110 111111111 0011111000 01123345689999999999988
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.+..++..+|++|+|+|++.|...++...|..+...++|+|+|+||+|+.
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 88889999999999999999999999999999999999999999999986
No 86
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=3.9e-17 Score=153.72 Aligned_cols=109 Identities=21% Similarity=0.309 Sum_probs=81.7
Q ss_pred EEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh----
Q 036359 301 CILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN---- 375 (657)
Q Consensus 301 ~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~---- 375 (657)
+++|++|+|||||+++|.+.+.. .....++|.......+.+ ....+.|||||||..+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW----------------GGREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE----------------CCeEEEEEECCCCCCchhHHHH
Confidence 48999999999999999987532 222344444332222222 123589999999988643
Q ss_pred ----hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 376 ----LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ----~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.....+..+|++|+|+|+.++........+.+++..++|+|+|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccC
Confidence 33456678999999999999887777777888888899999999999996
No 87
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.70 E-value=7.6e-17 Score=154.45 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=92.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh--
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN-- 375 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~-- 375 (657)
|.|+|+|++|+|||||+++|++..+......+.|..+....+.+ ....++||||||+.++..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY----------------KYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc----------------CceEEEEEECCCcCCccccC
Confidence 56999999999999999999988764333334343332222221 123599999999853211
Q ss_pred -------hhhcCCCCCceeeEeecccCCCc---hhHHHHHHHHHhc--CCceEEEecccccccCcccCCCccHHHHHHhh
Q 036359 376 -------LRSWGPGLCDIAILVVDIMDGIK---PQTIESLDLLKER--SVDFIIALSKADKLYGWKSCKNAPIKKALEQQ 443 (657)
Q Consensus 376 -------~~~~g~~~aD~aIlVVDa~~g~~---~qt~e~l~~l~~~--~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q 443 (657)
......+.+|++|||+|+++... ......+..+... ++|+|+|+||+|+.. ...
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~------~~~-------- 130 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT------FED-------- 130 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc------hhh--------
Confidence 01111234789999999987432 1222344445444 799999999999963 100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 444 SKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 444 ~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
+.. ...+... ..++++++||+++.++.+.+.+
T Consensus 131 -----------~~~-~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~ 162 (168)
T cd01897 131 -----------LSE-IEEEEEL--------------EGEEVLKISTLTEEGVDEVKNK 162 (168)
T ss_pred -----------HHH-HHHhhhh--------------ccCceEEEEecccCCHHHHHHH
Confidence 001 1111111 2367999999999999887654
No 88
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.3e-17 Score=175.17 Aligned_cols=132 Identities=23% Similarity=0.323 Sum_probs=100.4
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCc------------c----cccccCceeeeccceeeecccccchhhcccccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTN------------V----QEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~------------v----~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~ 355 (657)
..|+|| +.||.|+|||||||.++|.... + .++..+|||+...+..+.++-...-...+....
T Consensus 16 ~~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 16 KKNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred cccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 356899 8999999999999999997321 1 223357888765554443332211111122222
Q ss_pred ccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.-+.+-+++||.|||.+|++.....++.+|++++|||+.+|+.-||...|+++..-.+.-++++||+|+.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 2334568999999999999999999999999999999999999999999999998888889999999984
No 89
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=6.7e-16 Score=169.82 Aligned_cols=121 Identities=24% Similarity=0.379 Sum_probs=95.6
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCcccccc-----------------cCceeeeccceeeecccccchhhccccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGE-----------------AGGITQQIGATYFPVENIQKRTEKLNAD 354 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~-----------------~~GiT~~ig~~~~~~~~~~~~~~~~~~~ 354 (657)
+..+|| |+++||-.||||+|+++|.....+... .+|+++......+-....
T Consensus 125 p~~irn--V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~---------- 192 (971)
T KOG0468|consen 125 PERIRN--VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS---------- 192 (971)
T ss_pred cceEEE--EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC----------
Confidence 345677 999999999999999999876543321 233333333222222221
Q ss_pred cccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 355 AKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 355 ~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.-+.+-++|+|||||.+|...+...+..+|++|||||+.+|++-+|...|.++...++|++||+||+|++
T Consensus 193 -~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 193 -KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred -cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 1223558999999999999999999999999999999999999999999999999999999999999986
No 90
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=9.7e-17 Score=152.97 Aligned_cols=114 Identities=21% Similarity=0.290 Sum_probs=81.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
++.|+++|++|+|||||+++|++.... .+..++.|.......+... ...++||||||+..+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD----------------GKKYTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC----------------CeeEEEEECCCCccccc
Confidence 456999999999999999999986532 2223344433322222221 23489999999754411
Q ss_pred -----------hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 376 -----------LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 -----------~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.....+..+|++|+|+|++++...+....+..+...+.|+|+++||+|+..
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 112355789999999999998887777777777778999999999999964
No 91
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=7.1e-17 Score=178.88 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=109.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
..+.|+|+|++|+|||||+++|++... ......|+|.+.....+.+. ...++||||||+..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN----------------GKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC----------------CcEEEEEECCCccccc
Confidence 345699999999999999999998753 23445666655433333322 1248999999986543
Q ss_pred hh-----------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhh
Q 036359 375 NL-----------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQ 443 (657)
Q Consensus 375 ~~-----------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q 443 (657)
.. ...++..+|++|||||+.+|+..++...+.++...++|+|||+||+|+.. ....
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-----~~~~-------- 301 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-----DEKT-------- 301 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-----CHHH--------
Confidence 21 13467889999999999999999999999988888999999999999962 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 444 SKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 444 ~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
+..+...+... +. ....++++++||++|.++.+.+..
T Consensus 302 -----------~~~~~~~~~~~-~~---------~~~~~~vi~~SA~~g~~v~~l~~~ 338 (429)
T TIGR03594 302 -----------REEFKKELRRK-LP---------FLDFAPIVFISALTGQGVDKLLDA 338 (429)
T ss_pred -----------HHHHHHHHHHh-cc---------cCCCCceEEEeCCCCCCHHHHHHH
Confidence 11222222211 00 013478999999999998887654
No 92
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=6.2e-17 Score=154.91 Aligned_cols=153 Identities=21% Similarity=0.234 Sum_probs=94.4
Q ss_pred EEEEecCCCChhhhhhhhcCCcccc-cc---cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQE-GE---AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~-~~---~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
|+|+|++|+|||||+++|.+..... +. ....|..+....+.+ ....+.|||||||..|..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~l~Dt~G~~~~~~ 65 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV----------------GNARLKFWDLGGQESLRS 65 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE----------------CCEEEEEEECCCChhhHH
Confidence 8999999999999999998643210 00 001111111111222 123589999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCc-hhHHHHHHHH----HhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIK-PQTIESLDLL----KERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~-~qt~e~l~~l----~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++...+..+|++|+|||+++... ......+..+ ...++|+|+|+||+|+... ...
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------~~~-------------- 125 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA------LSV-------------- 125 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC------CCH--------------
Confidence 88888999999999999987321 1122222222 1347999999999998531 110
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+....-. .....++++++||++|.++.+.+.+
T Consensus 126 -----~~~~~~~~~~~~~--------~~~~~~~~~~~Sa~~g~gv~e~~~~ 163 (167)
T cd04160 126 -----EEIKEVFQDKAEE--------IGRRDCLVLPVSALEGTGVREGIEW 163 (167)
T ss_pred -----HHHHHHhcccccc--------ccCCceEEEEeeCCCCcCHHHHHHH
Confidence 1111111111000 0013478999999999999886654
No 93
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=1e-16 Score=173.10 Aligned_cols=145 Identities=22% Similarity=0.331 Sum_probs=115.5
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch--
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT-- 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~-- 374 (657)
|+|+|+|.+|+|||||+|+|++.... ....+|+|.+.-+....|.. ..|.+|||+|.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~----------------~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG----------------REFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC----------------ceEEEEECCCCCcCCch
Confidence 78999999999999999999998854 45678889887666666543 349999999987432
Q ss_pred ---h----hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHH
Q 036359 375 ---N----LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDV 447 (657)
Q Consensus 375 ---~----~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~ 447 (657)
. .....+..||++|||||+..|++++..+...+|+..+.|+|+|+||+|-..
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~--------------------- 126 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK--------------------- 126 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch---------------------
Confidence 1 133456889999999999999999999999999988899999999999752
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 448 EDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 448 ~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
.......|..+||. .++|+||.+|.+|.+++.
T Consensus 127 -------~e~~~~efyslG~g--------------~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 127 -------AEELAYEFYSLGFG--------------EPVPISAEHGRGIGDLLD 158 (444)
T ss_pred -------hhhhHHHHHhcCCC--------------CceEeehhhccCHHHHHH
Confidence 12334455666653 569999999998877664
No 94
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.68 E-value=8.1e-17 Score=155.93 Aligned_cols=152 Identities=21% Similarity=0.255 Sum_probs=98.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+.. +++++|.....+. +....+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~~--------------~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTLE--------------YEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEE--------------ECCEEEEEEECCCCHHHHH
Confidence 45669999999999999999999764421 2233332221111 1123489999999999888
Q ss_pred hhhcCCCCCceeeEeecccCCCch-hHHHHHHHH----HhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKP-QTIESLDLL----KERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~-qt~e~l~~l----~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|||+|+++.... .....+..+ ...++|+|+|+||+|+... ..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~--------------- 132 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA------LS--------------- 132 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC------CC---------------
Confidence 888888999999999999884211 112222222 2257899999999998531 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+...++. ...++++++||++|.++.+.+.+
T Consensus 133 ----~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 133 ----EEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred ----HHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHH
Confidence 01122222111111 13578999999999999886654
No 95
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.68 E-value=2.1e-16 Score=164.83 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=78.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch---
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT--- 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~--- 374 (657)
.|+|+|++|+|||||+|+|++.++. ....+++|.+.-..... .....+.||||||+....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~----------------~~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT----------------TGASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE----------------cCCcEEEEEECcCCCCCcchH
Confidence 5899999999999999999998754 23334445432111111 112348999999975431
Q ss_pred -----hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 375 -----NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 375 -----~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.....++..+|++|+|+|++.+.... ...+..+...++|+|+|+||+|+.
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 11335678899999999999865544 445566777899999999999985
No 96
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=1.7e-16 Score=152.03 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=78.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||+++|.+..+.......++..+....+.+... ...+.||||||+..|..++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGK--------------RVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHH
Confidence 45999999999999999999887654332222211111112222110 0238999999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH-HHHH---hcCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
...+..+|++|||+|+++....+....| ..+. ..++|+|+|+||+|+..
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 8888999999999999984333332222 2222 34789999999999963
No 97
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.68 E-value=2.7e-16 Score=150.57 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=78.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|++..+.......+...+....+.... ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEG--------------KTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECC--------------EEEEEEEEeCCCchhhhhhhH
Confidence 489999999999999999998776533222111111111111110 112388999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHH-HHHHHHhc--CCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKER--SVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~~--~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|++++...+... ++..+... ++|+|+|+||+|+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 9999999999999998854433333 23334333 78999999999984
No 98
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=1.6e-16 Score=176.44 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=108.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc-ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN-VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
..+.|+|+|++|+|||||+++|++.. +..+..+|+|.+.....+.+. ...+.||||||+....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD----------------GQKYTLIDTAGIRRKG 235 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC----------------CeeEEEEECCCCCCCc
Confidence 34669999999999999999999865 334455666655433333322 2348999999975432
Q ss_pred ----------hh-hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhh
Q 036359 375 ----------NL-RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQ 443 (657)
Q Consensus 375 ----------~~-~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q 443 (657)
.+ ..+++..+|++|||||++.|...|+...+.++...++|+|||+||+|+.. .. .+
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~------~~----~~--- 302 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD------EK----TM--- 302 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC------HH----HH---
Confidence 11 23467889999999999999999999999999889999999999999862 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 444 SKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 444 ~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
......+...|.. ...++++++||+++.++.+.+..
T Consensus 303 --------~~~~~~~~~~l~~--------------~~~~~i~~~SA~~~~gv~~l~~~ 338 (435)
T PRK00093 303 --------EEFKKELRRRLPF--------------LDYAPIVFISALTGQGVDKLLEA 338 (435)
T ss_pred --------HHHHHHHHHhccc--------------ccCCCEEEEeCCCCCCHHHHHHH
Confidence 0001111111111 13479999999999998887654
No 99
>PRK00089 era GTPase Era; Reviewed
Probab=99.67 E-value=2.8e-16 Score=165.51 Aligned_cols=116 Identities=23% Similarity=0.289 Sum_probs=83.0
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
++|+.+|+|+|++|+|||||+|+|++..+.. ....+.|.+.....+. .....++||||||+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~----------------~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT----------------EDDAQIIFVDTPGIHK 65 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE----------------cCCceEEEEECCCCCC
Confidence 3578889999999999999999999877532 1122222211111111 1123599999999754
Q ss_pred ch--------hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 373 FT--------NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 373 f~--------~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.. ......+..+|++|||+|+++++.......+..+...++|+|+|+||+|+.
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 66 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 32 223346688999999999999777777777777777789999999999996
No 100
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=1.2e-16 Score=150.99 Aligned_cols=107 Identities=22% Similarity=0.278 Sum_probs=78.8
Q ss_pred EEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh-----
Q 036359 302 ILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL----- 376 (657)
Q Consensus 302 viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~----- 376 (657)
|+|++|+|||||+++|++..+..+..+|+|.+.....+.+.. ..+.||||||+..|..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG----------------KEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC----------------eEEEEEECCCccccCCCChhHH
Confidence 589999999999999998765555566677665544444332 24899999999877642
Q ss_pred -hhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 377 -RSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 -~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+...+ ..+|++|+|+|+... .+....+..+...++|+|+|+||+|+..
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 33334 489999999999873 2233444556678999999999999963
No 101
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.7e-16 Score=175.70 Aligned_cols=116 Identities=31% Similarity=0.469 Sum_probs=94.8
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCcc----------------cccccCceeeeccceeeecccccchhhcccccc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTNV----------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~v----------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~ 355 (657)
...+|| ||++.|+|||||||.+.|+.++- .++..+|||...+....-
T Consensus 6 ~~~irn--~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~--------------- 68 (887)
T KOG0467|consen 6 SEGIRN--ICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL--------------- 68 (887)
T ss_pred CCceeE--EEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc---------------
Confidence 345788 99999999999999999986541 112234555443332211
Q ss_pred ccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
...+.++|||+|||.+|.......+..||+++++||+..|+..||...|+++..-+...|+|+||||++
T Consensus 69 -~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 69 -HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred -cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 234569999999999999999999999999999999999999999999999999999999999999975
No 102
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.67 E-value=1.4e-16 Score=151.23 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=75.6
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|++++|||||+++|.+..+.. ..+++++|.....+. .....+.||||||+..|..++..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~---~~~~~t~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQS---QIIVPTVGFNVESFE--------------KGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCc---ceecCccccceEEEE--------------ECCEEEEEEECCCCHhhHHHHHH
Confidence 8999999999999999999864321 112333333221111 11124899999999999988888
Q ss_pred CCCCCceeeEeecccCCCchh-HHHHHHHH------HhcCCceEEEecccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQ-TIESLDLL------KERSVDFIIALSKADKL 425 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~q-t~e~l~~l------~~~~vPiIvvlNKiDl~ 425 (657)
++..+|++|||+|++++.... ....+..+ ...++|+|+|+||+|+.
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 899999999999999854221 11222222 12479999999999985
No 103
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.66 E-value=4.4e-16 Score=149.36 Aligned_cols=113 Identities=23% Similarity=0.269 Sum_probs=75.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|++..+.......++.++....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD--------------KLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhHHH
Confidence 489999999999999999998776433222211111111111111 011378999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH--HHHh------cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD--LLKE------RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~--~l~~------~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|+|+|++++...+....|. ++.. .++|+|+|+||+|+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 8999999999999998843222222221 1111 278999999999996
No 104
>PRK15494 era GTPase Era; Provisional
Probab=99.66 E-value=2.5e-16 Score=169.41 Aligned_cols=115 Identities=24% Similarity=0.307 Sum_probs=81.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES- 372 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~- 372 (657)
.+...|+|+|++|+|||||+|+|++..+.. ....+.|.+.....+.+ +...+.||||||+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~----------------~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL----------------KDTQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe----------------CCeEEEEEECCCcCCC
Confidence 355679999999999999999999887642 22233343322222222 223589999999743
Q ss_pred chhh-------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 373 FTNL-------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 373 f~~~-------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
+..+ ....+..+|++|||||+..++...+...+..+...+.|+|+|+||+|+.
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 2211 1234678999999999998887776667777777888999999999985
No 105
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=3.4e-16 Score=149.06 Aligned_cols=114 Identities=23% Similarity=0.239 Sum_probs=80.4
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++++|||||+++|++..+.....+.++..+....+.+.. ....+.|||||||..|..++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG--------------KRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--------------EEEEEEEEECcchHHHHHhHH
Confidence 489999999999999999998876544333333222222222211 012388999999999988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-H---HHHhcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-D---LLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~---~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+..+|++|+|+|++++...+....| . .+...++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 888999999999999985443333333 2 23335789999999999863
No 106
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.66 E-value=3.7e-16 Score=148.77 Aligned_cols=148 Identities=26% Similarity=0.258 Sum_probs=94.6
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|++++|||||+++|....+... ..+++.....+. +....+.||||||+..|..++..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVT--------------YKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEE--------------ECCEEEEEEECCCCHHHHHHHHH
Confidence 89999999999999999976554321 112222111111 11124899999999999988888
Q ss_pred CCCCCceeeEeecccCCCch-hHHHHHH-HHHh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 380 GPGLCDIAILVVDIMDGIKP-QTIESLD-LLKE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~-qt~e~l~-~l~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
++..+|++|+|+|+++.... ...+.|. ++.. .++|+|+|+||+|+...+ .
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------~------------------- 117 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------S------------------- 117 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------C-------------------
Confidence 89999999999999873221 1223332 2222 378999999999985311 0
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+ +... .....++++|+||+++.++.+.+.+
T Consensus 118 ~~~i~~~~---~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 118 EAEISEKL---GLSE-------LKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred HHHHHHHh---Cccc-------cCCCcEEEEEeeccCCCCHHHHHHH
Confidence 01121222 1110 0012468999999999999886654
No 107
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.66 E-value=6.7e-16 Score=146.93 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=77.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++++|||||+++|++..+.....+.++.+++...+..... ...+.||||||+..|..++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNK--------------EVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCe--------------EEEEEEEECCccHHHHHHHH
Confidence 4899999999999999999988765433332222222222222110 12388999999999988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHHHh--------cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE--------RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~--------~~vPiIvvlNKiDl~ 425 (657)
..+..+|++|||+|+++....+....| ..+.. .++|+|+|+||+|+.
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 888999999999999884322222222 22211 358899999999986
No 108
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.66 E-value=6.4e-16 Score=146.81 Aligned_cols=113 Identities=21% Similarity=0.207 Sum_probs=82.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++++|||||+++|++..+.....++++.++....+.+... ...+.||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK--------------TVRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999998876655555554443333333211 01388999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHH-Hhc--CCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLL-KER--SVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l-~~~--~vPiIvvlNKiDl~ 425 (657)
..+..+|++|+|+|++++...+....| ..+ ... ++|+|+|+||+|+.
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 889999999999999884433333322 222 233 48999999999995
No 109
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=1e-15 Score=152.25 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=77.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|.+|+|||||+++|++..+.....+.+..++....+.+.. + ....+.||||||+..|..++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~----------~---~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP----------N---TVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC----------C---CEEEEEEEECCCchhhhhhHH
Confidence 489999999999999999998776543222222222112222210 0 012388999999999999888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH----HHH-------hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD----LLK-------ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~-------~~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|+++ +.+++.+. .+. ..++|+|+|+||+|+.
T Consensus 69 ~~~~~a~~~ilv~D~t~---~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 69 VYYRGAVGAIIVFDVTR---PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 89999999999999988 44444332 111 2468999999999996
No 110
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.65 E-value=5.5e-16 Score=147.40 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=78.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++++|||||+++|++..+.....+.++..+....+.+.. ......+.||||||+..|..++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ------------SDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcC------------CCCEEEEEEeeCCchHHHHHhHH
Confidence 489999999999999999998766543333222222111111110 00112489999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH-HHH--hcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD-LLK--ERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l~--~~~vPiIvvlNKiDl~~ 426 (657)
.+++.+|++|+|+|+++....+....|. .+. ..++|+|+|+||+|+..
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 8899999999999998733222222222 121 23799999999999963
No 111
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.65 E-value=8.6e-16 Score=145.99 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=80.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|++..+.....+.++.++....+.+... ...+.||||||+..|..++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK--------------RVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHHH
Confidence 4899999999999999999988765443333333332222322210 01378999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHHHh---cCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
..+..+|++|+|+|+++....+....| ..+.. .++|+|+|+||+|+..
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 889999999999999884333332222 22222 4689999999999863
No 112
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.65 E-value=9.7e-16 Score=146.78 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=77.1
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|.+..+......+++.++....+.+... ...+.||||||+..|..++.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~~~ 69 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK--------------TIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHhHHHHHH
Confidence 4899999999999999999987765433233222221111211110 12378999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH----HHHHh---cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL----DLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~---~~vPiIvvlNKiDl~ 425 (657)
..+..+|++|||+|+++ +.++..+ ..+.. .++|+|+|+||+|+.
T Consensus 70 ~~~~~~~~ii~v~d~~~---~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 70 SYYRGAHGIIIVYDVTD---QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred HHhCcCCEEEEEEECcC---HHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 88899999999999988 3344332 22222 368999999999985
No 113
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.65 E-value=1.1e-15 Score=152.85 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=79.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|..|+|||||+.++....+.......++..+....+.+... ...+.||||+|++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~--------------~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGK--------------KIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCE--------------EEEEEEEeCCCchhhHHHHH
Confidence 5899999999999999999988776443332322222222222110 12489999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHHHh---cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~---~~vPiIvvlNKiDl~ 425 (657)
.+++.+|++|||+|+++...-+....| ..+.. .++|+|+|+||+|+.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999999999999999984333333222 22222 368999999999985
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=8.1e-16 Score=147.44 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=78.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|++|+|||||+++|++..+..+....++..+....+.+... ...+.|||||||..|...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE--------------KIKLQIWDTAGQERFRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHH
Confidence 355999999999999999999976655433222222221112222110 013789999999999888
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHH----HHHHhcCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~~~vPiIvvlNKiDl~ 425 (657)
+...+..+|++|+|+|++++...+....| ..+...++|+|+|+||+|+.
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88889999999999999875433222222 22333478999999999985
No 115
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.64 E-value=7.4e-16 Score=147.68 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=71.1
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc------
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF------ 373 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f------ 373 (657)
|+|+|++|||||||+++|.+.....+...+.|.......+.+.. ...+.||||||+...
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~---------------~~~~~l~DtpG~~~~~~~~~~ 67 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD---------------GRSFVVADIPGLIEGASEGKG 67 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC---------------CCeEEEEecCcccCcccccCC
Confidence 89999999999999999997654333333333322222222111 125899999997421
Q ss_pred -hhhhhcCCCCCceeeEeecccCC-CchhHHHHH-HHHHh-----cCCceEEEeccccccc
Q 036359 374 -TNLRSWGPGLCDIAILVVDIMDG-IKPQTIESL-DLLKE-----RSVDFIIALSKADKLY 426 (657)
Q Consensus 374 -~~~~~~g~~~aD~aIlVVDa~~g-~~~qt~e~l-~~l~~-----~~vPiIvvlNKiDl~~ 426 (657)
...+.+.+..+|++|+|+|++++ -..+....| ..+.. .++|+|+|+||+|+..
T Consensus 68 ~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 68 LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 22223345569999999999985 222333322 22322 3689999999999863
No 116
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.64 E-value=1e-15 Score=147.46 Aligned_cols=114 Identities=22% Similarity=0.192 Sum_probs=77.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||+++|++..+.......++..+....+.+... ...+.||||||+..|..++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK--------------QIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 35999999999999999999987654332222222222222222110 1138999999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH-HHHHh---cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~---~~vPiIvvlNKiDl~ 425 (657)
...+..+|++|||+|+++....+....| ..++. .++|+|||+||+|+.
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 8889999999999999873322222222 22222 368999999999986
No 117
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.64 E-value=1.2e-15 Score=145.52 Aligned_cols=110 Identities=21% Similarity=0.215 Sum_probs=75.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|.+..+.....+.++ +.....+.... ....+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDG--------------EVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECC--------------EEEEEEEEECCCcccchHHHH
Confidence 489999999999999999998766433222111 11001111110 012378999999999999988
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH----HH----HhcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD----LL----KERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l----~~~~vPiIvvlNKiDl~~ 426 (657)
.++..+|++|+|+|+++ +++++.+. .+ ...++|+|+|+||+|+..
T Consensus 67 ~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 67 QYMRTGEGFLLVYSITD---RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHhhCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 88999999999999988 34433321 11 123689999999999863
No 118
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.64 E-value=1.4e-15 Score=144.64 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=75.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||++++++..+.....+ .++..+....... .....+.||||||+..|..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~----t~~~~~~~~~~~~-----------~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDP----TIEDSYTKQCEID-----------GQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCC----CccceEEEEEEEC-----------CEEEEEEEEECCCCcchhHHH
Confidence 3599999999999999999987665322111 1111111100000 001237899999999999998
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHH-HHHH----HhcCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIES-LDLL----KERSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l----~~~~vPiIvvlNKiDl~~ 426 (657)
..++..+|++|+|+|+++....+.... +..+ ...++|+|+|+||+|+..
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 888999999999999988332222211 1112 224789999999999863
No 119
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.64 E-value=5.8e-16 Score=143.97 Aligned_cols=114 Identities=22% Similarity=0.259 Sum_probs=75.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
+.|+++|++|+|||||+++|++..+......+++.+.....+..... .+.+.+||||||..|..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK--------------TYKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE--------------EEEEEEEECCCcccchHHH
Confidence 35999999999999999999998866555556665554433333210 0248899999999886655
Q ss_pred hcCCCCCceeeEeeccc-------CCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIM-------DGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~-------~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
......++.+++++|.. ++........+..+.. ++|+|||+||+|+..
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCc
Confidence 54444555555555544 3332333333333333 899999999999963
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.64 E-value=4.6e-16 Score=147.67 Aligned_cols=147 Identities=25% Similarity=0.263 Sum_probs=95.6
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|++|+|||||+++|++...... +..++.....+. +....+.||||||+..|..++..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~-----~~t~~~~~~~~~--------------~~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTT-----IPTIGFNVETVE--------------YKNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCcCcceEEEE--------------ECCEEEEEEECCCChhhHHHHHH
Confidence 89999999999999999998763211 112222211111 11234899999999999888888
Q ss_pred CCCCCceeeEeecccCCC-chhHHHHHHHH----HhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 380 GPGLCDIAILVVDIMDGI-KPQTIESLDLL----KERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l----~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.+..+|++|+|+|++.+- .......+..+ ...+.|+|+|+||+|+... ..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~------------------- 117 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA------LS------------------- 117 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc------cC-------------------
Confidence 889999999999999842 11222333222 2347899999999998631 00
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
...+...+..... ....++++++||++|.++.+.+.
T Consensus 118 ~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 118 VSELIEKLGLEKI----------LGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred HHHHHHhhChhhc----------cCCcEEEEEeeCCCCCCHHHHHH
Confidence 1122222211100 12457999999999999887654
No 121
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.64 E-value=5e-16 Score=172.16 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=88.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-----
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES----- 372 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~----- 372 (657)
+|+|+|++|+|||||+|+|++.... ....+|+|.+.....+.+.. ..+.||||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~----------------~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG----------------REFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC----------------eEEEEEECCCCCCcchhH
Confidence 3899999999999999999987632 33456777665544444432 2489999999843
Q ss_pred ---chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 373 ---FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 373 ---f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+...+..++..+|++|+|||+..|+.......+..++..++|+|+|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 334455677889999999999999999998888899999999999999999863
No 122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=1.7e-15 Score=145.33 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=76.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|+.++|||||+++|....+.....+.+...+....+.... ....+.||||||+..|..++.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 69 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNG--------------QKIKLQIWDTAGQERFRAVTR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999998766433221111111111111111 012388999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH----HHH---hcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD----LLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~---~~~vPiIvvlNKiDl~~ 426 (657)
..+..+|++|||+|+++ +.+++.+. .+. ..++|+|+|+||+|+..
T Consensus 70 ~~~~~~~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 70 SYYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88999999999999998 44443332 121 23578999999999963
No 123
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=7.5e-16 Score=172.91 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=86.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC---
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE--- 371 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~--- 371 (657)
..+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+.+. ...+.||||||+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~----------------~~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG----------------GKTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC----------------CEEEEEEECCCccccc
Confidence 4567999999999999999999987642 3445666655443333332 1247899999952
Q ss_pred -------cchhhh-hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 372 -------SFTNLR-SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 372 -------~f~~~~-~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.|..++ ...+..+|++|||+|++++...+....+..+...++|+|||+||+|+.
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 233332 235678999999999999999988888888888899999999999996
No 124
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.64 E-value=1.5e-15 Score=145.99 Aligned_cols=115 Identities=20% Similarity=0.154 Sum_probs=77.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||+++|.+..+.....+.++.+.....+.+.. ....+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG--------------KKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 4599999999999999999998876543222222111111111111 01248899999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH-HHHH---hcCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
...+..+|++|+|+|++++..-+....| ..+. ..++|+|+|+||+|+..
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 8888999999999999874322222222 2222 23689999999999963
No 125
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=6.4e-16 Score=173.49 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=86.3
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc----
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES---- 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~---- 372 (657)
|.|+|+|.+|+|||||+|+|++.... .....|+|.+.....+.+. ...+.||||||+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~----------------~~~~~l~DT~G~~~~~~~ 102 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN----------------GRRFTVVDTGGWEPDAKG 102 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC----------------CcEEEEEeCCCcCCcchh
Confidence 66999999999999999999987642 3445677765443333332 23488999999863
Q ss_pred ----chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 373 ----FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 373 ----f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
|...+..++..||++|||||++++........+..++..++|+|+|+||+|+.
T Consensus 103 ~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 103 LQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 22334456788999999999999987777777778888899999999999985
No 126
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=9e-16 Score=170.51 Aligned_cols=112 Identities=22% Similarity=0.358 Sum_probs=87.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc----
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES---- 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~---- 372 (657)
|.|+|+|++|+|||||+++|++.... .....|+|.+.....+.+.. ..+.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~----------------~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG----------------REFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC----------------cEEEEEECCCCCCcchh
Confidence 56999999999999999999987642 34456666655444443322 3489999999987
Q ss_pred c----hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 373 F----TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 373 f----~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
+ ......++..+|++|||||+.+++.......+.+++..++|+|+|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 2 2223456788999999999999988887777888888899999999999974
No 127
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.63 E-value=1.9e-15 Score=142.96 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=75.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|++..+.....+. ++..+...-.+. + ....+.||||||+..|..++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t----~~~~~~~~~~~~--------~---~~~~~~i~Dt~G~~~~~~l~~ 67 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----IEDSYRKQVVID--------G---ETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCc----chheEEEEEEEC--------C---EEEEEEEEECCCCcchHHHHH
Confidence 4899999999999999999987654332221 121111100000 0 012377999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHHH----hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~----~~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|+|+|.++....+....| ..+. ..++|+|+|+||+|+.
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999999873322222211 1222 2478999999999986
No 128
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.63 E-value=2.4e-15 Score=143.12 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=75.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++++|||||+++|++..+.......+...+....+.+.. ....+.||||||+..|..++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------------~~~~~~i~D~~G~~~~~~~~~ 68 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------------TTVKFEIWDTAGQERYRSLAP 68 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHHH
Confidence 589999999999999999998876542211111111111122211 012388999999999988887
Q ss_pred cCCCCCceeeEeecccCCCch-hHHHHHHHHHh---cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKP-QTIESLDLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~-qt~e~l~~l~~---~~vPiIvvlNKiDl~ 425 (657)
..++.+|++|||+|+++...- .....+..+.. .++|+||++||+|+.
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 788899999999999873211 11222233322 358899999999986
No 129
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.63 E-value=2.4e-15 Score=144.60 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=76.5
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++++|||||+++|++..+.......++..+....+.+.. ....+.||||||+..|..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 71 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG--------------HFVTLQIWDTAGQERFRSLR 71 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC--------------eEEEEEEEeCCChHHHHHhH
Confidence 3499999999999999999998776543222221111111111111 01237899999999999998
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHH-HH-H------hcCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLD-LL-K------ERSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l-~------~~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|+|+|+++....+....|. .+ . ..++|+|+|+||+|+.
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 88999999999999998843333222221 11 1 1358999999999985
No 130
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.63 E-value=1.5e-15 Score=147.62 Aligned_cols=150 Identities=23% Similarity=0.200 Sum_probs=96.3
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+++|++++|||||+++|.+..+.. ..+.++..+..+. +....+.||||||+..|...+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~~~~--------------~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-----TSPTIGSNVEEIV--------------YKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEE--------------ECCeEEEEEECCCCHHHHHHH
Confidence 459999999999999999998765532 1222222221111 112348999999999998888
Q ss_pred hcCCCCCceeeEeecccCCCch-hHHHHHH-HHHh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHH
Q 036359 378 SWGPGLCDIAILVVDIMDGIKP-QTIESLD-LLKE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFK 452 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~-qt~e~l~-~l~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~ 452 (657)
..++..+|++|||+|++++... .....|. ++.. .++|++|++||+|+...+ +
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~----------------- 133 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------T----------------- 133 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------C-----------------
Confidence 8888999999999999874221 1122222 2222 358999999999985210 1
Q ss_pred HHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 453 MRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 453 ~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...|....+. ...++++|+||+++.++.+.+.+
T Consensus 134 --~~~i~~~l~~~~~~----------~~~~~~~~~SA~~g~gi~e~~~~ 170 (174)
T cd04153 134 --PAEISESLGLTSIR----------DHTWHIQGCCALTGEGLPEGLDW 170 (174)
T ss_pred --HHHHHHHhCccccc----------CCceEEEecccCCCCCHHHHHHH
Confidence 11222222111011 12468999999999999887654
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=7.9e-16 Score=144.25 Aligned_cols=108 Identities=21% Similarity=0.220 Sum_probs=76.1
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|++|+|||||+++|.+..+.....+ .++..+..+. .....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~----t~~~~~~~~~--------------~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP----TVGFNMRKVT--------------KGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC----CCCcceEEEE--------------ECCEEEEEEECCCCHhHHHHHHH
Confidence 79999999999999999998866533222 2222211111 01123899999999999988888
Q ss_pred CCCCCceeeEeecccCCCc-hhHHHHHHHHH----hcCCceEEEecccccc
Q 036359 380 GPGLCDIAILVVDIMDGIK-PQTIESLDLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~-~qt~e~l~~l~----~~~vPiIvvlNKiDl~ 425 (657)
++..+|++|+|+|+++... .+....+..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 8999999999999987322 22223333332 2478999999999985
No 132
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.62 E-value=2.5e-15 Score=142.90 Aligned_cols=110 Identities=21% Similarity=0.173 Sum_probs=74.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|.+|+|||||+++|....+.....+.+. ..-...+.... ....+.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECC--------------EEEEEEEEECCCccccchHH
Confidence 3589999999999999999997765432111111 00000111110 01237899999999999998
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH----HHHH----hcCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL----DLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~----~~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|||+|+++ +.+++.+ ..+. ..++|+|+|+||+|+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 67 DLYIKNGQGFVLVYSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred HHHhhcCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 888999999999999987 3333322 2222 2368999999999985
No 133
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.62 E-value=2e-15 Score=143.45 Aligned_cols=150 Identities=21% Similarity=0.221 Sum_probs=94.4
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|++|+|||||+++|.+..+... . .+++..+..... .....+.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQL-------------EKHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEe-------------CCceEEEEEECCCCHhHHHHHHH
Confidence 89999999999999999998765421 1 112211111100 01134899999999998888888
Q ss_pred CCCCCceeeEeecccCCCc-hhHHHHHHH-HH---hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 380 GPGLCDIAILVVDIMDGIK-PQTIESLDL-LK---ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~-~qt~e~l~~-l~---~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
++..+|++|||+|++++.. ......+.. +. ..++|+++|+||+|+...+ +
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~------------------- 118 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------T------------------- 118 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------C-------------------
Confidence 8899999999999988431 111112221 22 2578999999999985311 0
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+....+. ....++++++||+++.++.+.+..
T Consensus 119 ~~~i~~~~~~~~~~---------~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 119 AEEITRRFKLKKYC---------SDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred HHHHHHHcCCcccC---------CCCcEEEEecccccCCChHHHHHH
Confidence 01222121111111 013468999999999999886643
No 134
>PRK04213 GTP-binding protein; Provisional
Probab=99.62 E-value=1.8e-15 Score=150.04 Aligned_cols=110 Identities=26% Similarity=0.396 Sum_probs=78.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC----
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE---- 371 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~---- 371 (657)
+.+.|+|+|++|+|||||+++|++..+..+..+|+|.... .+.+ ..++||||||+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~--~~~~------------------~~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN--HYDW------------------GDFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCce--EEee------------------cceEEEeCCccccccc
Confidence 4567999999999999999999988766555556554321 1111 138999999953
Q ss_pred -------cchhhh----hcCCCCCceeeEeecccCC-----------CchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 372 -------SFTNLR----SWGPGLCDIAILVVDIMDG-----------IKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 372 -------~f~~~~----~~g~~~aD~aIlVVDa~~g-----------~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.|..++ ..++..+|++|+|+|++.. ..+.+.+.+..+...++|+|+|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKI 143 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECcccc
Confidence 232222 2245668899999998652 22345566677777899999999999985
No 135
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.62 E-value=1.1e-15 Score=149.93 Aligned_cols=115 Identities=21% Similarity=0.159 Sum_probs=75.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
+..|+++|+.|+|||||+++|.+..+... .+ |..+....+..... ......+.||||||+..|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~--t~~~~~~~~~~~~~-----------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VP--TKGFNTEKIKVSLG-----------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CC--ccccceeEEEeecc-----------CCCceEEEEEECCCcHhHHHH
Confidence 34599999999999999999987665422 11 11111111111000 001124899999999999888
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HH----HHHHhcCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SL----DLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l----~~l~~~~vPiIvvlNKiDl~ 425 (657)
+..++..+|++|+|||++++....... .+ ......++|+|+|+||+|+.
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 888889999999999998732111111 11 22233579999999999985
No 136
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.62 E-value=1.7e-15 Score=146.64 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=95.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|+.++|||||+++|....+.. ...++|..+..+. .....+.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-----~~~t~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVT--------------YKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-----ccCCcccceEEEE--------------ECCEEEEEEECCCCHHHHHH
Confidence 3459999999999999999998655431 1112222221111 01124899999999999888
Q ss_pred hhcCCCCCceeeEeecccCCCc-hhHHHHHH-HHH---hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 377 RSWGPGLCDIAILVVDIMDGIK-PQTIESLD-LLK---ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~-~qt~e~l~-~l~---~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
+..++..+|++|||||+++... ......|. .+. ..++|+|+|+||+|+...+ +
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 127 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------K---------------- 127 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------C----------------
Confidence 8888899999999999988321 11222232 222 2368999999999985310 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..++...+. +.. .....+.++++||++|.++.+.+.+
T Consensus 128 ---~~~i~~~~~---~~~-------~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 128 ---PHEIQEKLG---LTR-------IRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred ---HHHHHHHcC---CCc-------cCCCcEEEEEeeCCCCCChHHHHHH
Confidence 112222221 110 0113457899999999999886654
No 137
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.62 E-value=3.1e-15 Score=141.01 Aligned_cols=114 Identities=24% Similarity=0.291 Sum_probs=78.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccc-cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGE-AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~-~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
+...|+++|++|+|||||+++|++..+.... ....+.......+. .....+.||||||+..+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT----------------DDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEE----------------cCCeEEEEEECCCCCcch
Confidence 3567999999999999999999987643211 11111111000110 112348999999986543
Q ss_pred h--------hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 375 N--------LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~--------~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
. .....+..+|++++|+|+.++........+..+...+.|++||+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 2 23445788999999999999766566666677777789999999999996
No 138
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.62 E-value=2.3e-15 Score=145.31 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=78.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch-hh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT-NL 376 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~-~~ 376 (657)
..|+|+|++|+|||||+++|++..+.......+...+....+.+.. ....+.||||||+..|. .+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~ 68 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG--------------ERIKVQLWDTAGQERFRKSM 68 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC--------------eEEEEEEEeCCChHHHHHhh
Confidence 4599999999999999999998776543322222111111111111 01248999999999886 46
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHHH-HHHh----cCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESLD-LLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l~~----~~vPiIvvlNKiDl~ 425 (657)
+..++..+|++|+|+|++++...+....|. .+.. .++|+|+|+||+|+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 777788999999999999855544444433 2322 358999999999985
No 139
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.61 E-value=2.4e-15 Score=142.99 Aligned_cols=113 Identities=23% Similarity=0.217 Sum_probs=75.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++++|||||+++|++..+.....+.++.++....+.+.. ....+.||||||+..|..+..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------------KKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhH
Confidence 489999999999999999998765432222111111111111110 012389999999999988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHH----HhcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLL----KERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l----~~~~vPiIvvlNKiDl~ 425 (657)
..++.+|++|+|+|+++....+....| ..+ ...++|+++|+||+|+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 888999999999999873322222222 222 23478999999999996
No 140
>PTZ00369 Ras-like protein; Provisional
Probab=99.61 E-value=3.6e-15 Score=146.93 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=76.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|+.|+|||||++++.+..+..... .+++..+...-. +. .....+.||||||+.+|..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~----~t~~~~~~~~~~-------~~----~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYD----PTIEDSYRKQCV-------ID----EETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CchhhEEEEEEE-------EC----CEEEEEEEEeCCCCccchhh
Confidence 3569999999999999999999876643211 112221110000 00 00123789999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHH-HHHHH----hcCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~----~~~vPiIvvlNKiDl~ 425 (657)
+..++..+|++|+|+|+++...-..... +..+. ..++|+|+|+||+|+.
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999988332122221 12222 2378999999999985
No 141
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.61 E-value=3.3e-15 Score=143.39 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=76.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|..|+|||||+++|.+..+.......++..+....+.... ....+.||||||+..|..++.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND--------------KRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCChHHHHHHHH
Confidence 489999999999999999998776432212111111111111100 012388999999999999888
Q ss_pred cCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
..+..+|++|+|+|+++....+... ++..+.. .++|+|||+||+|+..
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 8999999999999998732222222 2223322 3578999999999963
No 142
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.61 E-value=3.8e-15 Score=144.63 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=79.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|.+++|||||+++|.+..+.....+.++.++....+.+.... .. .....-....+.||||||+..|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSG--PG--GTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcc--cc--ccccCCCEEEEEEEeCCChHHHHHHH
Confidence 458999999999999999999877654332222222211112211100 00 00000011248899999999999888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHH----HHHh----cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLD----LLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~~----~~vPiIvvlNKiDl~ 425 (657)
...+..+|++|+|+|+++ ++++..+. .+.. .+.|+|+|+||+|+.
T Consensus 81 ~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTN---EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred HHHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 889999999999999987 45544442 2222 267899999999986
No 143
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.61 E-value=1.8e-15 Score=145.98 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=75.4
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|.+|+|||||+++|+...+.....+.+...+ ....+... .....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLDFHTN------------RGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEE--EEEEEEEC------------CEEEEEEEEECCCChhhccccH
Confidence 489999999999999999987655432222111111 11111100 0112388999999999988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHHHh-c-CCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE-R-SVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~-~-~vPiIvvlNKiDl~ 425 (657)
..+..+|++|+|+|++++..-+....| ..+.. . ++|+|+|+||+|+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 888999999999999984333333222 22222 1 69999999999985
No 144
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=3.9e-15 Score=145.71 Aligned_cols=114 Identities=25% Similarity=0.284 Sum_probs=92.3
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc--ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN--VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~--v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
....|-|+++|.+|+|||||||+|++.. ...+..+|.|+.+.++.+.. .+.|+|.||+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-------------------~~~lVDlPGYG 81 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-------------------ELRLVDLPGYG 81 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-------------------cEEEEeCCCcc
Confidence 3456779999999999999999999966 55778899999887554432 27899999964
Q ss_pred ----------cchhhhhcCC---CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 372 ----------SFTNLRSWGP---GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 372 ----------~f~~~~~~g~---~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+..+...++ ....++|++||+.+++.....+.+.++...++|++|++||+|.+.
T Consensus 82 yAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 82 YAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK 149 (200)
T ss_pred cccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence 1223333333 236689999999999999999999999999999999999999985
No 145
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.61 E-value=3.9e-15 Score=148.37 Aligned_cols=110 Identities=19% Similarity=0.267 Sum_probs=72.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh---
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN--- 375 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~--- 375 (657)
.|+|+|.+|+|||||+++|++..+.....+.++..+....+.+.. ....+.||||||+..|..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSG--------------RVYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECC--------------EEEEEEEEeCCCcccCCccch
Confidence 489999999999999999998776543222222221111111111 012378999999876531
Q ss_pred -----hhhcCCCCCceeeEeecccCCCchhHHHHHHH----HH------hcCCceEEEecccccc
Q 036359 376 -----LRSWGPGLCDIAILVVDIMDGIKPQTIESLDL----LK------ERSVDFIIALSKADKL 425 (657)
Q Consensus 376 -----~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~----l~------~~~vPiIvvlNKiDl~ 425 (657)
.....+..+|++|||+|+++ +.+++++.. +. ..++|+|+|+||+|+.
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~---~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICS---PDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 13345688999999999998 444443321 11 2468999999999995
No 146
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.61 E-value=1.5e-15 Score=146.36 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=77.5
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|+.|+|||||+++|.+..+... ..+++|..+..+. .....+.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~----~~pt~g~~~~~i~--------------~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES----VVPTTGFNSVAIP--------------TQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc----ccccCCcceEEEe--------------eCCeEEEEEECCCCcchhHHHHH
Confidence 79999999999999999998765432 2233343222221 11234899999999999999888
Q ss_pred CCCCCceeeEeecccCCCchh-HHHHHHHHH--hcCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQ-TIESLDLLK--ERSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~q-t~e~l~~l~--~~~vPiIvvlNKiDl~~ 426 (657)
++..+|++|||||+++..... ....+..+. ..++|+|+|+||+|+..
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 999999999999998843211 222233232 25799999999999853
No 147
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.61 E-value=2.9e-15 Score=143.15 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=77.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|.+++|||||+++|.+..+.....+.++..+....+..... ...+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK--------------TIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCChHHHHHHH
Confidence 35999999999999999999987765433333322222222222110 0138899999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHH----HHHh---cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLD----LLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~~---~~vPiIvvlNKiDl~ 425 (657)
...+..+|++|+|+|+++ +.+...+. .+.. .++|+++|+||+|+.
T Consensus 70 ~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 70 SAYYRGAVGALLVYDITK---KQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred HHHHCCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 888899999999999987 44444332 2222 258999999999985
No 148
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=2.7e-15 Score=162.13 Aligned_cols=157 Identities=22% Similarity=0.289 Sum_probs=114.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc-ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC---
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN-VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE--- 371 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~--- 371 (657)
.+..|+|+|.+|+|||||+|+|++.. +-.+...|+|.+.-...+.++. ..|.||||.|..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~----------------~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG----------------RKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC----------------eEEEEEECCCCCccc
Confidence 45669999999999999999999876 3355667888776555555433 359999999943
Q ss_pred -------cchhh-hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhh
Q 036359 372 -------SFTNL-RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQ 443 (657)
Q Consensus 372 -------~f~~~-~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q 443 (657)
.|... ....+..+|+|+||+|++.|+..|....+.++...|.++|||+||+|++..+. .+
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~--------~~---- 308 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDE--------AT---- 308 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchh--------hH----
Confidence 34333 23456789999999999999999999999999999999999999999975210 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 444 SKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 444 ~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+.. .+...|... +..+++++||+++.++...+..
T Consensus 309 ----~~~~k~---~i~~~l~~l--------------~~a~i~~iSA~~~~~i~~l~~~ 345 (444)
T COG1160 309 ----MEEFKK---KLRRKLPFL--------------DFAPIVFISALTGQGLDKLFEA 345 (444)
T ss_pred ----HHHHHH---HHHHHhccc--------------cCCeEEEEEecCCCChHHHHHH
Confidence 111111 222222221 4579999999999988776653
No 149
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.61 E-value=1.8e-15 Score=150.59 Aligned_cols=114 Identities=23% Similarity=0.254 Sum_probs=72.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc---
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF--- 373 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f--- 373 (657)
.+.|+|+|++|||||||+++|++..+......+.|.......+.+. +...++||||||+.+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP---------------DGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec---------------CCceEEEeCCCccccCCCH
Confidence 3569999999999999999999876433222222322211111111 1125899999998432
Q ss_pred ------hhhhhcCCCCCceeeEeecccCCCchhHHH-HHHHH---HhcCCceEEEeccccccc
Q 036359 374 ------TNLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLL---KERSVDFIIALSKADKLY 426 (657)
Q Consensus 374 ------~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l---~~~~vPiIvvlNKiDl~~ 426 (657)
... ...+..+|++|+|+|++++....... +...+ ...++|+|+|+||+|+..
T Consensus 106 ~~~~~~~~~-~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 106 QLVEAFRST-LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred HHHHHHHHH-HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 111 12356799999999999865443332 22333 334689999999999964
No 150
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.60 E-value=2.3e-15 Score=144.20 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=94.4
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|+.++|||||+++|....+.. ..+++|....... .....+.||||||+..|..++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-----~~pt~g~~~~~~~--------------~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVE--------------YKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-----cCCCCCcceEEEE--------------ECCEEEEEEECCCCHhHHHHHH
Confidence 48999999999999999997655432 1122232111110 1112489999999999998888
Q ss_pred cCCCCCceeeEeecccCCCc-hhHHHHHHHH-Hh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHH
Q 036359 379 WGPGLCDIAILVVDIMDGIK-PQTIESLDLL-KE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKM 453 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~-~qt~e~l~~l-~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~ 453 (657)
.++..+|++|||+|+++... .+..+.|..+ .. .++|+|+|+||+|+... ..
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------~~------------------ 118 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------MS------------------ 118 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------CC------------------
Confidence 88999999999999987321 1222223222 21 25899999999998520 00
Q ss_pred HHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 454 RLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 454 ~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..++...+ +++.. ....+.++++||++|.++.+.+..
T Consensus 119 -~~~i~~~~---~~~~~-------~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 119 -AAEVTDKL---GLHSL-------RNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred -HHHHHHHh---Ccccc-------CCCCEEEEEeeCCCCCCHHHHHHH
Confidence 01222222 22110 113457889999999999886653
No 151
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=4.7e-15 Score=141.47 Aligned_cols=109 Identities=22% Similarity=0.234 Sum_probs=74.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|.+|+|||||++++....+.....+.+ ..+....+.... ....+.||||||+..|..++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDS--------------SPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-hheEEEEEEECC--------------EEEEEEEEECCCcccccchHH
Confidence 58999999999999999999876643221111 001001111110 001378999999999999988
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH----HHHHh----cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL----DLLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~----~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|+|+|+++ +.++..+ ..+.. .++|+|+|+||+|+.
T Consensus 68 ~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 68 LYIKNGQGFIVVYSLVN---QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred HHHhhCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 88999999999999988 3333322 22222 478999999999985
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.60 E-value=3.3e-15 Score=140.34 Aligned_cols=110 Identities=22% Similarity=0.348 Sum_probs=76.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh-
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL- 376 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~- 376 (657)
.|+++|++|+|||||+++|.+.... .+...++|..+....+.+. ...++||||||+.++...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG----------------GIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC----------------CEEEEEEECCCcCCCcchH
Confidence 5899999999999999999987642 2333455544333233222 234899999998776422
Q ss_pred -------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 377 -------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 -------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
....+..+|++|+|+|+++.........+.. ..+.|+|+|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 2345678999999999998554443333332 56799999999999964
No 153
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.60 E-value=3e-15 Score=146.83 Aligned_cols=151 Identities=21% Similarity=0.192 Sum_probs=96.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+++|..++|||||+++|....+.. . .+++|..+..+. +....+.||||||+..|..+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~----~pt~g~~~~~~~--------------~~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-T----IPTIGFNVETVE--------------YKNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc-c----cCCcceeEEEEE--------------ECCEEEEEEECCCCHHHHHH
Confidence 4569999999999999999998655432 1 122232221111 11224899999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCch-hHHHHHHHH-H---hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKP-QTIESLDLL-K---ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~-qt~e~l~~l-~---~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
+..++..+|++|+|+|+++...- .....|..+ . ..++|++||+||+|+... .+
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------~~---------------- 135 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MN---------------- 135 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------CC----------------
Confidence 88899999999999999873211 111222222 1 136899999999998531 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...| |+... ....+.++++||++|.++.+.+.+
T Consensus 136 ---~~~~~~~l---~l~~~-------~~~~~~~~~~Sa~~g~gv~e~~~~ 172 (181)
T PLN00223 136 ---AAEITDKL---GLHSL-------RQRHWYIQSTCATSGEGLYEGLDW 172 (181)
T ss_pred ---HHHHHHHh---Ccccc-------CCCceEEEeccCCCCCCHHHHHHH
Confidence 11222222 33210 013456789999999999887654
No 154
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.60 E-value=4.4e-15 Score=146.18 Aligned_cols=112 Identities=25% Similarity=0.348 Sum_probs=77.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc--ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC--
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ--EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE-- 371 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~--~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~-- 371 (657)
.-+.|+|+|++|+|||||+++|++..+. .....|.|..+..+.+ . ..+.||||||+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--N-----------------DKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--C-----------------CeEEEeCCCCCCCc
Confidence 3456999999999999999999986421 1223344443322111 1 248999999963
Q ss_pred --------cchhhhh---cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 372 --------SFTNLRS---WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 372 --------~f~~~~~---~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.|..+.. +....++++++|+|+..+........+..+...++|+++++||+|+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 2222222 233445788999999888777666666777778999999999999974
No 155
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.60 E-value=4.7e-15 Score=147.45 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=76.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
+.|+|+|+.|+|||||+++|.+..+.......++..+....+.+.. ....+.||||||+..|..++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING--------------ERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC--------------EEEEEEEEeCCCchhHHHHH
Confidence 4599999999999999999998766432222221111111111111 00137899999999999888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHH-HHHHHHh--cCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
..++..+|++|||+|+++...-+... ++..+.. ..+|+|||+||+|+..
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 88899999999999998833222222 2222222 2578999999999863
No 156
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.60 E-value=5.3e-15 Score=144.21 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=76.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|..|+|||||+.+|....+.....+.+...+.. .+.+.. ....+.||||||+..|..++.
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGG--------------EPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECC--------------EEEEEEEEECCCccchhhhhh
Confidence 48999999999999999999877753322222111110 111110 012488999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHH-HH-HHHH--hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE-SL-DLLK--ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e-~l-~~l~--~~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|+++....+... .| ..+. ..++|+|+|+||+|+.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 8889999999999998843333221 22 2222 2368999999999985
No 157
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=4.7e-15 Score=144.06 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=78.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|..|+|||||+.++.+..+.....+ .++..+...-... +. ...+.||||||...|..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~----t~~~~~~~~~~~~--------~~---~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDP----TIEDAYKQQARID--------NE---PALLDILDTAGQAEFTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCC----cccceEEEEEEEC--------CE---EEEEEEEeCCCchhhHHHh
Confidence 4589999999999999999998776532211 1222111000000 00 1238899999999999999
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH-HHHH----hcCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~----~~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|||+|+++....++...| ..+. ..++|+|+|+||+|+.
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 8899999999999999985544443322 2222 2468999999999985
No 158
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.60 E-value=3.5e-15 Score=146.55 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=98.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|.+|+|||||+++|.+..+... .+ |.+.....+.+ ....+.++||||+..|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~--t~~~~~~~~~~----------------~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QP--TQHPTSEELAI----------------GNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-CC--ccccceEEEEE----------------CCEEEEEEECCCCHHHHH
Confidence 446699999999999999999998654321 11 11111111111 123489999999999988
Q ss_pred hhhcCCCCCceeeEeecccCCCc-hhHHHHHHHHH----hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIK-PQTIESLDLLK----ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~-~qt~e~l~~l~----~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|+|||+++... ......+..+. ..++|+|+|+||+|+... .+
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------~~--------------- 135 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------AS--------------- 135 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------CC---------------
Confidence 88888999999999999987321 12222332221 257899999999998531 11
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...| |+..............+.++|+||+++.++.+.+.+
T Consensus 136 ----~~~i~~~l---~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~w 179 (184)
T smart00178 136 ----EDELRYAL---GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKW 179 (184)
T ss_pred ----HHHHHHHc---CCCcccccccccCCceeEEEEeecccCCChHHHHHH
Confidence 11222222 211100000000124567999999999998886654
No 159
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.60 E-value=4.4e-15 Score=146.78 Aligned_cols=111 Identities=22% Similarity=0.315 Sum_probs=78.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|..++|||||+.++....+..... .+++..+...-.+. + ....+.||||||++.|..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~----~t~~~~~~~~~~~~--------~---~~~~l~i~Dt~G~e~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYI----PTVFDNYSAQTAVD--------G---RTVSLNLWDTAGQEEYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCC----CceEeeeEEEEEEC--------C---EEEEEEEEECCCchhhhhh
Confidence 3569999999999999999999887754322 22232221100000 0 0124889999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHHH-----HHH--hcCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESLD-----LLK--ERSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-----~l~--~~~vPiIvvlNKiDl~ 425 (657)
+..++..+|++|+|+|+++ +.+++.+. .+. ..++|+|+|+||+|+.
T Consensus 68 ~~~~~~~a~~~ilvydit~---~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 68 RTLSYPQTNVFIICFSIAS---PSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred hhhhccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 9889999999999999998 44444442 121 2378999999999985
No 160
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.60 E-value=7.7e-15 Score=148.62 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=77.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|.+++|||||+++|+...+... ...++..+.... +..+.+.||||||+..|..++.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEE--------------eeEEEEEEEeCCCcccchhhHH
Confidence 489999999999999999998876421 122332222111 1112489999999999999988
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH----HHH---hcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD----LLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~---~~~vPiIvvlNKiDl~~ 426 (657)
.++..+|++|||+|+++ .++++.+. .+. ..++|+|+|+||+|+..
T Consensus 63 ~~~~~ad~~IlV~Dvt~---~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 63 MYCRGAAAVILTYDVSN---VQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 89999999999999998 44544432 222 23589999999999975
No 161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.60 E-value=2.9e-15 Score=144.65 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=75.5
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|..++|||||+++|.+. +... ...++|.....+. +....+.||||||+..|..++..
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~~----~~~t~g~~~~~~~--------------~~~~~~~i~D~~G~~~~~~~~~~ 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPKK----VAPTVGFTPTKLR--------------LDKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCcc----ccCcccceEEEEE--------------ECCEEEEEEECCCcHHHHHHHHH
Confidence 899999999999999999875 2211 2223333221111 11234899999999999999888
Q ss_pred CCCCCceeeEeecccCCCch-hHHHHHHHHHh----cCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKP-QTIESLDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~-qt~e~l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
++..+|++|||||+++.... .....+..+.. .++|+++|+||+|+..
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 99999999999999884321 12223333322 4789999999999863
No 162
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.59 E-value=3.9e-15 Score=139.29 Aligned_cols=113 Identities=25% Similarity=0.251 Sum_probs=78.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|++++|||||+++|++..+.......++.+.....+.... ....+.||||||+..|..+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG--------------KTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC--------------EEEEEEEEecCChHHHHHHHH
Confidence 589999999999999999998876644322222222222222211 112488999999999988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHH-HHHHHHhc---CCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKER---SVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~~---~vPiIvvlNKiDl~ 425 (657)
..+..+|++|+|+|+++........ ++..+... ++|+++++||+|+.
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 8889999999999998833222222 23333333 58999999999995
No 163
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.59 E-value=5.4e-15 Score=141.34 Aligned_cols=112 Identities=21% Similarity=0.156 Sum_probs=74.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|.+|+|||||++++....+.....+.+...+ ...+.+.. ....+.||||||+..|..++.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDG--------------QQCMLEILDTAGTEQFTAMRD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECC--------------EEEEEEEEECCCcccchhHHH
Confidence 589999999999999999987655332111111110 00111110 012378999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHH-HHHHH----HhcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE-SLDLL----KERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l----~~~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|.++....+... .+..+ ...++|+|+|+||+|+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 9999999999999988733222221 22222 22468999999999996
No 164
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.59 E-value=4.4e-15 Score=146.41 Aligned_cols=112 Identities=26% Similarity=0.260 Sum_probs=75.1
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|.+|+|||||+++|+...+.....+ +++..+....... + ....+.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~----t~~~~~~~~~~~~--------~---~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDP----TIEDSYRKQVVVD--------G---QPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCC----chHhhEEEEEEEC--------C---EEEEEEEEECCCchhhHHHHHH
Confidence 89999999999999999997766432111 1121111100000 0 0113889999999999999988
Q ss_pred CCCCCceeeEeecccCCCchhHHHHH-HHHHh------cCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESL-DLLKE------RSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~------~~vPiIvvlNKiDl~~ 426 (657)
++..+|++|||+|+++.........| ..+.. .++|+|+|+||+|+..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 99999999999999884322222222 22221 3689999999999963
No 165
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=4.1e-15 Score=150.43 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=79.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.....|+|+|..|+|||||+++++...+.....+ ++|..+..+.... ......+.||||||+..|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~----tig~~~~~~~~~~----------~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----TIGVEVHPLDFFT----------NCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCC----ccceeEEEEEEEE----------CCeEEEEEEEECCCchhhh
Confidence 4556799999999999999999987766533222 2222222111000 0001248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH-HHHH--hcCCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK--ERSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~--~~~vPiIvvlNKiDl~ 425 (657)
.++..++..+|++|||+|+++....+....| ..+. ..++|+|+|+||+|+.
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 9888889999999999999984433333222 2222 2468999999999985
No 166
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.59 E-value=2.5e-15 Score=144.83 Aligned_cols=153 Identities=23% Similarity=0.196 Sum_probs=97.3
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|.+..+... ..+.|....... +....+.+|||||+..|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~--------------~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQ--------------SDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEE--------------ECCEEEEEEECCCCHHHH
Confidence 3456699999999999999999998654211 111221111111 112348899999999888
Q ss_pred hhhhcCCCCCceeeEeecccCCCc-hhHHHHHHHH----HhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIK-PQTIESLDLL----KERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVED 449 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~-~qt~e~l~~l----~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~ 449 (657)
.++...+..+|++|+|+|+.+... ..+...+..+ ...++|+++++||+|+.. ...+
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------~~~~------------- 133 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT------AAPA------------- 133 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc------CCCH-------------
Confidence 888888899999999999987221 1122222222 234789999999999853 1111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 450 EFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 450 ~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+... .++... ....++++++||+++.++.+.+.+
T Consensus 134 ------~~i~~~---l~~~~~-------~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 134 ------EEIAEA---LNLHDL-------RDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred ------HHHHHH---cCCccc-------CCCeEEEEEeECCCCCCHHHHHHH
Confidence 112222 222210 113457899999999999887654
No 167
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=1.3e-14 Score=141.92 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=76.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|+.|+|||||+++|.+..+.....+.+..++.. .+.... + ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~----------~---~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPN----------G---KIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecC----------C---cEEEEEEEECCCchhHHHHHH
Confidence 48999999999999999999877654322222111110 011100 0 012388999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHH--HHHHHH--hcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE--SLDLLK--ERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~--~~~vPiIvvlNKiDl~~ 426 (657)
.++..+|++|||+|+++....+... ++..+. ..++|+|+|+||+|+..
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 8899999999999998833222221 111222 23689999999999863
No 168
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.59 E-value=2.7e-15 Score=147.19 Aligned_cols=112 Identities=24% Similarity=0.213 Sum_probs=76.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|+.|+|||||+++|.+..+.. .. .|..+....+.+. ...+.+|||||+..|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~--~T~~~~~~~i~~~----------------~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HV--PTLHPTSEELTIG----------------NIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cC--CccCcceEEEEEC----------------CEEEEEEECCCCHHHH
Confidence 356779999999999999999999866421 11 1211111112211 1248899999999998
Q ss_pred hhhhcCCCCCceeeEeecccCCCc-hhHHHHHHHHH----hcCCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIK-PQTIESLDLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~-~qt~e~l~~l~----~~~vPiIvvlNKiDl~ 425 (657)
.++..++..+|++|+|+|+++... ......+..+. ..++|+|||+||+|+.
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 887778889999999999987321 11222332222 3468999999999985
No 169
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.59 E-value=1.1e-14 Score=139.71 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=76.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||++++++..+.... +..++..+...-. .......+.||||||+..|..++.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~----~~t~~~~~~~~~~-----------~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESY----IPTIEDTYRQVIS-----------CSKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc----CCcchheEEEEEE-----------ECCEEEEEEEEECCCCCcchHHHH
Confidence 4899999999999999999987764321 1122221111000 001112488999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHH-HHHHHHh------cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE------RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~------~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|+++........ ++..+.. .++|+|+|+||+|+.
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 7888999999999998843322222 2222322 468999999999985
No 170
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.58 E-value=7.3e-15 Score=141.65 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=76.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++++|||||+++|.+..+.....+.+.... ...+.+.. ..+.+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGG--------------KQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECC--------------EEEEEEEEeCCCccccccccc
Confidence 489999999999999999998776533222211111 11111111 012378999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHH--HHHHHH--hcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE--SLDLLK--ERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~--~~~vPiIvvlNKiDl~~ 426 (657)
..+..+|++|||+|+++.-..+... .+..+. ..++|+|+|+||+|+..
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 8889999999999998843322221 122232 35789999999999853
No 171
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=6.3e-15 Score=145.27 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=76.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|..|+|||||+++|++..+.....+ +++..+...-... + ....+.||||||+..|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~----t~~~~~~~~i~~~--------~---~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEP----TVFENYVHDIFVD--------G---LHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCC----cceeeeEEEEEEC--------C---EEEEEEEEECCCChhcccccc
Confidence 489999999999999999998776533222 1222211100000 0 012489999999999988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHH--HHHHHHh--cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE--SLDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|+++....+... ++..+.. .++|+|+|+||+|+.
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 8889999999999999843333322 2223332 378999999999996
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.58 E-value=2.7e-15 Score=144.13 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=87.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC----cch
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE----SFT 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~----~f~ 374 (657)
.|+|+|++|+|||||+++|.+..... ...+. +.+.. ..+|||||.. .+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-------~~~~~--v~~~~------------------~~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-------RKTQA--VEFND------------------KGDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-------ccceE--EEECC------------------CCcccCCccccCCHHHH
Confidence 39999999999999999998653211 11111 11110 1269999963 233
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
..+..++..+|++|+|+|++.+....+...+.. ..++|+|+++||+|+.. .+.
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~-------~~~------------------ 108 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD-------ADV------------------ 108 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc-------ccH------------------
Confidence 333445788999999999998765444322221 24689999999999852 111
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
..+...+...|+ ..|++++||+++.++.+.+.+.
T Consensus 109 -~~~~~~~~~~~~-------------~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 109 -AATRKLLLETGF-------------EEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred -HHHHHHHHHcCC-------------CCCEEEEECCCccCHHHHHHHH
Confidence 122233333332 2589999999999998877653
No 173
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.58 E-value=3.5e-15 Score=144.12 Aligned_cols=107 Identities=23% Similarity=0.196 Sum_probs=73.0
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|+.++|||||+++|.+..+.. ...+++..+..+. +....+.||||||+..|..++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~-----~~~T~~~~~~~~~--------------~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ-----PIPTIGFNVETVE--------------YKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCceeEEEEE--------------ECCEEEEEEECCCChhcchHHHH
Confidence 7899999999999999999865431 1112222221111 11234899999999999888888
Q ss_pred CCCCCceeeEeecccCCCc-hhHHHHHHHHH-h---cCCceEEEecccccc
Q 036359 380 GPGLCDIAILVVDIMDGIK-PQTIESLDLLK-E---RSVDFIIALSKADKL 425 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~-~qt~e~l~~l~-~---~~vPiIvvlNKiDl~ 425 (657)
++..+|++|||+|+++... ......+..+. . .++|+|+|+||+|+.
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 8899999999999987321 11122222222 1 247999999999985
No 174
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.58 E-value=8.7e-15 Score=142.50 Aligned_cols=151 Identities=22% Similarity=0.184 Sum_probs=97.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+++|+.++|||||+++|....+.. ..++++..+..+. .....+.||||||+..|..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~--------------~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVT--------------YKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEE--------------ECCEEEEEEECCCChhhHHH
Confidence 4569999999999999999997554421 1222332221111 11124899999999999998
Q ss_pred hhcCCCCCceeeEeecccCCC-chhHHHHHHHHH-h---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 377 RSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLK-E---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~-~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
+..++..+|++|||+|+++.. .....+.|..+. . .++|++||+||+|+...+ +
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 131 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------K---------------- 131 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------C----------------
Confidence 888899999999999998732 112233333322 1 358999999999985311 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+... .|+.. .....+.++|+||++|.++.+.+.+
T Consensus 132 ---~~~i~~~---~~~~~-------~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 132 ---AAEITEK---LGLHS-------IRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ---HHHHHHH---hCccc-------cCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 0112221 12211 0123467889999999999887654
No 175
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.58 E-value=1.1e-14 Score=139.92 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=74.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|+.|+|||||+++|.+..+... ...+.. .+.+.... ......+.||||||+..|...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~---~~~~~~~~------------~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLP---EITIPADV------------TPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCccc---ceEeeeee------------cCCeEEEEEEeCCCchhhhHHHh
Confidence 489999999999999999998776432 111111 11111000 00112488999999988877777
Q ss_pred cCCCCCceeeEeecccCCCchhHHH-HH-HHHH--hcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE-SL-DLLK--ERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e-~l-~~l~--~~~vPiIvvlNKiDl~~ 426 (657)
..+..+|++|||+|++++...+... .| ..+. ..++|+|+|+||+|+..
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 7788999999999998844333321 12 2233 23789999999999964
No 176
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.58 E-value=8.3e-15 Score=136.19 Aligned_cols=110 Identities=25% Similarity=0.369 Sum_probs=79.9
Q ss_pred EEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh----
Q 036359 302 ILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL---- 376 (657)
Q Consensus 302 viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~---- 376 (657)
|+|++|+|||||+++|.+..+. .+...+.|.......+.+.. ...+.||||||+..+...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP---------------LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC---------------CCcEEEEECCCCCccccchhhH
Confidence 5899999999999999987654 33334444333322222210 235999999998876532
Q ss_pred ---hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 377 ---RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ---~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
....+..+|++|||+|+..+........+..+...++|+|+|+||+|+..
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 33466889999999999998776666656667778999999999999974
No 177
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.58 E-value=4.3e-15 Score=160.44 Aligned_cols=112 Identities=23% Similarity=0.302 Sum_probs=75.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC-c----
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE-S---- 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~-~---- 372 (657)
+.|+|+|++|+|||||+|+|++..+......|.|.++....+.+. +...++||||||+. .
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---------------~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---------------DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---------------CCceEEEEecCcccccCCHH
Confidence 679999999999999999999876543333444543322222221 12358999999972 2
Q ss_pred ----chhhhhcCCCCCceeeEeecccCCCchhHHH----HHHHHHhcCCceEEEecccccc
Q 036359 373 ----FTNLRSWGPGLCDIAILVVDIMDGIKPQTIE----SLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 373 ----f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e----~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
|... ...+..+|++|+|||++++....... .+..+...++|+|+|+||+|+.
T Consensus 255 lie~f~~t-le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 255 LVAAFRAT-LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred HHHHHHHH-HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 2222 22467899999999999865433322 2222333378999999999996
No 178
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=5.4e-15 Score=173.64 Aligned_cols=113 Identities=21% Similarity=0.299 Sum_probs=87.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc---
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES--- 372 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~--- 372 (657)
.+.|+|+|++|+|||||+|+|++.... .....|+|.+.-.....+. ...+.||||||+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~----------------~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA----------------GTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC----------------CEEEEEEeCCCcCCCCc
Confidence 345999999999999999999987532 3345677765433222222 23489999999763
Q ss_pred -----chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 373 -----FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 373 -----f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
|......++..+|++|||||+++++.......+..++..++|+|+|+||+|+.
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 23344556788999999999999998888878888888999999999999985
No 179
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.58 E-value=1.3e-14 Score=143.54 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=78.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|..++|||||+.+|....+.......++..+....+.++. ....+.||||||+..|..++
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDG--------------RRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4599999999999999999998766433222222222111111111 01248899999999999998
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHH----HHHh--cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLD----LLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~~--~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|||+|+++ +.+++.+. .+.. .++|+|||+||+|+.
T Consensus 73 ~~~~~~ad~illVfD~t~---~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 73 RSYSRGAQGIILVYDITN---RWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred HHHhcCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 888899999999999998 44444332 2322 368999999999985
No 180
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=9e-15 Score=144.31 Aligned_cols=113 Identities=23% Similarity=0.252 Sum_probs=75.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccc-cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGE-AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~-~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
.|+|+|.+|+|||||+++|.+..+..+. ...+...+....+.+... ...+.||||||+..|..++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGV--------------KVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCE--------------EEEEEEEeCCCcHHHHHhh
Confidence 4899999999999999999987764322 111111111111111110 1238899999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~ 425 (657)
...+..+|++|+|+|+++....+... .+..+.. .++|+|+|+||+|+.
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 88889999999999998843222112 2222322 368999999999985
No 181
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.58 E-value=1.3e-14 Score=140.00 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=76.1
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|+.|+|||||+++|.+..+.....+.+..... ..+.... ....+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDG--------------KPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECC--------------EEEEEEEEECCCCcccchhchh
Confidence 589999999999999999987765332222211110 0111110 0124889999999999888888
Q ss_pred CCCCCceeeEeecccCCCchhHHHHH-----HHHHh--cCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESL-----DLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
.+..+|++|||+|+++ +++++.+ ..+.. .++|+|+|+||+|+..
T Consensus 66 ~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 66 SYPDTDVFLICFSVDS---PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred hcCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 8899999999999987 4454433 22222 3789999999999963
No 182
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.57 E-value=7.1e-15 Score=172.62 Aligned_cols=114 Identities=17% Similarity=0.299 Sum_probs=86.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc---
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES--- 372 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~--- 372 (657)
.+.|+|+|++|+|||||+|+|++.... .....|+|.+.....+.+. ...++||||||+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~----------------~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID----------------GEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC----------------CCEEEEEECCCcccCcc
Confidence 466999999999999999999988642 3345566654433333332 23488999999642
Q ss_pred -------chhhh-hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 373 -------FTNLR-SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 373 -------f~~~~-~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
|..++ ...+..+|++|||+|+++++..+....+..+...++|+|+|+||+|+..
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 22222 2346889999999999999999998888888888999999999999963
No 183
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.57 E-value=1.1e-14 Score=137.76 Aligned_cols=113 Identities=24% Similarity=0.216 Sum_probs=76.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|++..+.....+.++..+....+.+.. ....+.+|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG--------------KRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC--------------EEEEEEEEECCchHHHHHhhH
Confidence 489999999999999999998776533222222222111111110 012388999999998988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHH---HhcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLL---KERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l---~~~~vPiIvvlNKiDl~ 425 (657)
.+++.+|++|+|+|++++...+....| ..+ ...++|+|+|+||+|+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 888999999999999885433322222 122 22368999999999986
No 184
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.57 E-value=9.9e-15 Score=146.98 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=76.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++++|||||+++|.+..+.....+.++.++....+.+... ....+.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-------------~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-------------LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999987765433222222221111221110 012488999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH----HHHHh------cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL----DLLKE------RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~------~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|+++ +.+++.+ ..+.. .++|+|+|+||+|+.
T Consensus 69 ~~~~~ad~iilV~D~t~---~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 69 KYIYGAHAVFLVYDVTN---SQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHhhcCCEEEEEEECCC---HHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 88999999999999988 4444433 22222 235799999999995
No 185
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.57 E-value=1.7e-14 Score=136.83 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=74.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|.+|+|||||+++|+...+.....+.+. ........+.. ....+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDG--------------EDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECC--------------EEEEEEEEECCChhhhhHHHH
Confidence 489999999999999999998765433222111 11000011110 112388999999999999998
Q ss_pred cCCCCCceeeEeecccCCCchhHHH----HHHH-HH---hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE----SLDL-LK---ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e----~l~~-l~---~~~vPiIvvlNKiDl~ 425 (657)
..++.+|++|+|+|+++ +.+.. .+.. +. ..++|+|+|+||+|+.
T Consensus 67 ~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 67 NYHRSGEGFLLVFSITD---MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred HHhhcCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 89999999999999887 33322 2222 22 2579999999999986
No 186
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.57 E-value=1.8e-14 Score=138.11 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=75.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|++..+.....+.+.... ...+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDG--------------KQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECC--------------EEEEEEEEeCCCcccccccch
Confidence 489999999999999999998876432222111111 11111110 012388999999998877777
Q ss_pred cCCCCCceeeEeecccCCCchhHH--HHHHHHHh--cCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTI--ESLDLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~--e~l~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
..+..+|++|+|+|+++....+.. .++..+.. .++|+|+|+||+|+..
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRD 118 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhh
Confidence 778899999999999873322221 12333332 3599999999999974
No 187
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.57 E-value=1e-14 Score=139.07 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=75.1
Q ss_pred eEEEEecCCCChhhhhhhhcCC--cccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGT--NVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~--~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.|+|+|.+++|||||+++|... .+.......+..++....+.... + ....+.||||||+..|..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------~---~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT----------D---NTVELFIFDSAGQELYSDM 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC----------C---CEEEEEEEECCCHHHHHHH
Confidence 4899999999999999999864 33322222221111111121110 0 0123899999999999888
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHH-HHHHh--cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
+...+..+|++|+|+|+++.........| ..+.. .++|+|+|+||+|+..
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 88889999999999999873222222222 22222 3689999999999853
No 188
>PLN03110 Rab GTPase; Provisional
Probab=99.56 E-value=1.6e-14 Score=145.72 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=78.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|+.++|||||+++|.+..+.....+.+...+....+.+... ...+.||||||+..|..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~--------------~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK--------------TVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 35999999999999999999987765332222222221122222110 1238899999999999888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH-HHHHh---cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~---~~vPiIvvlNKiDl~ 425 (657)
...+..+|++|||+|+++....+....| ..+.. .++|+|+|+||+|+.
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 8889999999999999874333333222 22322 478999999999985
No 189
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=1.5e-14 Score=143.74 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=74.9
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|+.|+|||||+++|++..+...... .+..+....+.+.. . ...+.||||||+..|..++..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~-t~~~~~~~~~~~~~-----------~---~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRR-TVEEMHRKEYEVGG-----------V---SLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCC-chhhheeEEEEECC-----------E---EEEEEEEECCCchhhhHHHHH
Confidence 89999999999999999998765432111 11111111111111 0 023889999999999988888
Q ss_pred CCCCCceeeEeecccCCCchhHHHHH-HHHH----hcCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESL-DLLK----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~----~~~vPiIvvlNKiDl~~ 426 (657)
++..+|++|||+|++++...+....| ..+. ..++|+|||+||+|+..
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 89999999999999883322222221 1121 24799999999999863
No 190
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.56 E-value=2.9e-14 Score=140.34 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=75.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeecccee----eecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATY----FPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~----~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.|+|+|++++|||||+++|++..+..+.. ..+++..+ +.+.. . ...+.||||||+..|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~-----------~---~~~l~i~D~~G~~~~~ 64 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVVGE-----------R---VVTLGIWDTAGSERYE 64 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEECC-----------E---EEEEEEEECCCchhhh
Confidence 48999999999999999999877653221 11222222 11111 0 0137899999999998
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHhc--CCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKER--SVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~~--~vPiIvvlNKiDl~ 425 (657)
.++..++..+|++|||+|+++....+... ++..+... ++|+|+|+||+|+.
T Consensus 65 ~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 65 AMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 88887888999999999998742222212 22333333 68999999999985
No 191
>PLN03118 Rab family protein; Provisional
Probab=99.56 E-value=2.3e-14 Score=143.77 Aligned_cols=114 Identities=22% Similarity=0.194 Sum_probs=75.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+... .+.++..+....+.+.. ....+.||||||+..|..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~--------------~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGG--------------KRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECC--------------EEEEEEEEECCCchhhHHH
Confidence 45699999999999999999998765321 11111111111111111 0124889999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHH-HH-HHH----hcCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIES-LD-LLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~-~l~----~~~vPiIvvlNKiDl~ 425 (657)
+..++..+|++|||+|+++....+.... |. .+. ..++|+|+|+||+|+.
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 8889999999999999988433222221 21 122 2357899999999986
No 192
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.56 E-value=2.4e-14 Score=139.43 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=75.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|..++|||||+.++++..+.....+.+..... ..+.... ....+.||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDG--------------KPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 35899999999999999999987765332221111000 0111110 01238899999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHH--HHHHHHh--cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIE--SLDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|||+|+++.-..+... ++..+.. .++|+|+|+||+|+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 88889999999999999833322221 2222222 268999999999985
No 193
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.56 E-value=1.4e-14 Score=139.75 Aligned_cols=110 Identities=23% Similarity=0.249 Sum_probs=74.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|+.++|||||+++|.+..+.....+.+...+. ..+.+.. ....+.||||||+..|..++.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDG--------------KQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECC--------------EEEEEEEEeCCCchhhhhccc
Confidence 4899999999999999999987765332221111110 1111111 012388999999999988877
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-----HHHHh--cCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-----DLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
.++..+|++++|+|+++. .+++.+ ..+.. .++|+|+|+||+|+..
T Consensus 68 ~~~~~~d~~i~v~~~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 68 LSYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred cccCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 788999999999999873 333222 22222 3789999999999864
No 194
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.56 E-value=1.9e-14 Score=148.36 Aligned_cols=109 Identities=22% Similarity=0.328 Sum_probs=75.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|..|+|||||+++|++..+.....+.+. ++....+.+.. ..+.+.||||+|+..|..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~--------------~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRG--------------EVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECC--------------EEEEEEEEECCCChhhhHHHH
Confidence 489999999999999999998776543222111 11111111110 013488999999999988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH----HHH------------hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD----LLK------------ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~------------~~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|+++. .+++.+. .+. ..++|+|+|+||+|+.
T Consensus 67 ~~~~~ad~iIlVfdv~~~---~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 67 LSILTGDVFILVFSLDNR---ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred HHhccCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 788899999999999983 3433322 221 1368999999999985
No 195
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2e-14 Score=139.04 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=85.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|.+|+|||.|+.++.+..+.......|..++....+.++... + .+.||||.|++.|..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~-----------i---KlQIWDTAGQERFrt 73 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT-----------I---KLQIWDTAGQERFRT 73 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE-----------E---EEEeeeccccHHHhh
Confidence 44569999999999999999999998876544434333333333333211 1 489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHHH----HH---hcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLDL----LK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~----l~---~~~vPiIvvlNKiDl~~ 426 (657)
++..+++.|+++|+|+|++. ..++..+.. +. ..++|.++|+||+|+..
T Consensus 74 it~syYR~ahGii~vyDiT~---~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITK---QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred hhHhhccCCCeEEEEEEccc---HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 99999999999999999998 444444432 22 23689999999999975
No 196
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=3.5e-14 Score=136.27 Aligned_cols=155 Identities=20% Similarity=0.278 Sum_probs=109.4
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCccc-------ccccCc---eeeeccceeeecccccchhhccccccccCCCcE
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQ-------EGEAGG---ITQQIGATYFPVENIQKRTEKLNADAKLKVPGL 362 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~-------~~~~~G---iT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l 362 (657)
..++...|+|+|+.++||||++..+...... .....+ +|..+.+..+.+. ..+++
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---------------~~~~v 70 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---------------EDTGV 70 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---------------CcceE
Confidence 3466778999999999999999999865421 111222 2222211111111 12469
Q ss_pred EEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcC-CceEEEecccccccCcccCCCccHHHHHH
Q 036359 363 LVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS-VDFIIALSKADKLYGWKSCKNAPIKKALE 441 (657)
Q Consensus 363 ~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~-vPiIvvlNKiDl~~~w~~~~~~~~~~~L~ 441 (657)
.|+|||||.+|..|+.-.++.++++|++||++.+......+.+..+...+ +|++|++||.|+...|.+
T Consensus 71 ~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp----------- 139 (187)
T COG2229 71 HLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP----------- 139 (187)
T ss_pred EEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH-----------
Confidence 99999999999999999999999999999999966655566677777777 999999999999865542
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 442 QQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 442 ~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
..|...|... + -.+++|+++|..+.++.+.|.
T Consensus 140 --------------e~i~e~l~~~-~------------~~~~vi~~~a~e~~~~~~~L~ 171 (187)
T COG2229 140 --------------EKIREALKLE-L------------LSVPVIEIDATEGEGARDQLD 171 (187)
T ss_pred --------------HHHHHHHHhc-c------------CCCceeeeecccchhHHHHHH
Confidence 2233333321 0 247899999998887776554
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.55 E-value=1.5e-14 Score=169.78 Aligned_cols=111 Identities=25% Similarity=0.306 Sum_probs=82.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+++|++|+|||||+|+|++.+...+...|+|.......+.+. ...++||||||+.+|...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~----------------~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT----------------DHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC----------------ceEEEEEECCCccccccc
Confidence 4569999999999999999999987766777888875443333322 234899999999887532
Q ss_pred h----------hcC--CCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 377 R----------SWG--PGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~----------~~g--~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
. ..+ ...+|++|+|+|+++... ....+..+...++|+|+|+||+|+.
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 1 112 246899999999988432 2334556778899999999999985
No 198
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.55 E-value=3.1e-14 Score=139.73 Aligned_cols=147 Identities=22% Similarity=0.234 Sum_probs=94.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|+.++|||||++++....+.. . ..+++..+..+. +....+.||||||+..|..++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~-~----~~T~~~~~~~~~--------------~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT-T----IPTIGFNVETVE--------------YKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c----CCccccceEEEE--------------ECCEEEEEEECCCCHhHHHHH
Confidence 459999999999999999997654431 1 112222221111 111348999999999999888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHH----HHH-HHHh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHH
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIE----SLD-LLKE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVED 449 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e----~l~-~l~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~ 449 (657)
..++..+|++|||+|+++ +.++. .+. .+.. .++|+|||+||+|+...+ +
T Consensus 79 ~~~~~~ad~iI~v~D~t~---~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~-------------- 135 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSND---RERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------S-------------- 135 (182)
T ss_pred HHHhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------C--------------
Confidence 888999999999999986 33232 222 2222 357999999999985310 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 450 EFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 450 ~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+... .|+. +.. ...+.++++||++|.++.+.+.+
T Consensus 136 -----~~~i~~~---l~~~---~~~----~~~~~~~~~Sa~tg~gv~e~~~~ 172 (182)
T PTZ00133 136 -----TTEVTEK---LGLH---SVR----QRNWYIQGCCATTAQGLYEGLDW 172 (182)
T ss_pred -----HHHHHHH---hCCC---ccc----CCcEEEEeeeCCCCCCHHHHHHH
Confidence 0112111 2221 000 13467889999999999887654
No 199
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.55 E-value=2e-14 Score=139.44 Aligned_cols=111 Identities=21% Similarity=0.214 Sum_probs=76.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|+.++|||||++++++..+.....+.+...+....+.+... ...+.||||||+..|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV--------------PFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCChHHHHhhHH
Confidence 4899999999999999999988775433222222211111111110 12489999999999999988
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH----HHHHhc----CCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL----DLLKER----SVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~~----~vPiIvvlNKiDl~~ 426 (657)
..++.+|++|||+|+++ ++++..+ ..+... .+|+|+|+||+|+..
T Consensus 68 ~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 68 TYYRGAQAIIIVFDLTD---VASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHhcCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 88999999999999987 3444332 222222 256899999999853
No 200
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.54 E-value=2.9e-14 Score=140.11 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=74.1
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeecccee----eecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATY----FPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~----~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.|+++|..++|||||+.+|++..+.... .+++|..+ +.... ....+.||||+|+..|.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~----~~T~g~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~ 63 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDY----IQTLGVNFMEKTISIRG--------------TEITFSIWDLGGQREFI 63 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEEECC--------------EEEEEEEEeCCCchhHH
Confidence 4899999999999999999987765432 22233222 11111 01248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH----HHHHh---cCCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~---~~vPiIvvlNKiDl~ 425 (657)
.++..++..+|++|+|+|+++ +.++..+ ..+.. ..+| |+|+||+|+.
T Consensus 64 ~~~~~~~~~a~~iilv~D~t~---~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 64 NMLPLVCNDAVAILFMFDLTR---KSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred HhhHHHCcCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 988888999999999999988 4443332 22322 2356 6789999996
No 201
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.54 E-value=2.3e-14 Score=137.80 Aligned_cols=110 Identities=20% Similarity=0.111 Sum_probs=70.6
Q ss_pred EEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch----h--
Q 036359 302 ILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT----N-- 375 (657)
Q Consensus 302 viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~----~-- 375 (657)
|+|++|+|||||+++|.+..+..+...+.|.......+.+.. ...+.||||||+.... .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~~~~~ 65 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD---------------GARIQVADIPGLIEGASEGRGLG 65 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC---------------CCeEEEEeccccchhhhcCCCcc
Confidence 589999999999999998765333444555444333332220 2358999999984321 1
Q ss_pred -hhhcCCCCCceeeEeecccCCC------chhHHH-HHHHHH----------hcCCceEEEeccccccc
Q 036359 376 -LRSWGPGLCDIAILVVDIMDGI------KPQTIE-SLDLLK----------ERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 -~~~~g~~~aD~aIlVVDa~~g~------~~qt~e-~l~~l~----------~~~vPiIvvlNKiDl~~ 426 (657)
.....+..+|++++|+|+.+.. ...... ++..+. ..++|+|+|+||+|+..
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 1233567799999999998863 111111 111121 14789999999999963
No 202
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.54 E-value=4.9e-14 Score=137.90 Aligned_cols=112 Identities=18% Similarity=0.276 Sum_probs=78.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|+.++|||||+.++....+.....+ +++..+...-... + ....+.||||+|++.|..++.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~----Ti~~~~~~~~~~~--------~---~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVSVD--------G---NTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCC----cceeeeEEEEEEC--------C---EEEEEEEEECCCCccccccch
Confidence 489999999999999999998877543222 2222221100000 0 012489999999999999998
Q ss_pred cCCCCCceeeEeecccCCCchhHH-H-HHHHHHh--cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTI-E-SLDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~-e-~l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
.+++.+|++|||+|.++...-+.. . ++..+.. .++|+|+|+||+|+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 899999999999999984333322 1 2233332 368999999999995
No 203
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.54 E-value=2.2e-14 Score=139.34 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=76.4
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ..+.+.||||||+..|..++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKG--------------QDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECC--------------EEEEEEEEECCChHhhHHHHH
Confidence 489999999999999999998765432222211110 11111110 012378999999999988888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHH-H---hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLL-K---ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l-~---~~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|+|+|++++...+....+ ..+ . ..++|+|+|+||+|+.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 888999999999999985443333322 222 2 2467999999999985
No 204
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=4.2e-14 Score=142.26 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=76.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|.+|+|||||+++|++..+.....+.++.++....+.+. .+. ...+.||||||+..|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~----------~~~---~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE----------PGV---RIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC----------CCC---EEEEEEEeCCcchhHHHHH
Confidence 359999999999999999999877643322222111111111110 000 1238899999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHH----HHH----hcCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLD----LLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~----~~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|||+|+++ +++++.+. .+. ..++|+|||+||+|+.
T Consensus 70 ~~~~~~~d~iilv~D~~~---~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 70 RSYYRNSVGVLLVFDITN---RESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred HHHhcCCcEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 888999999999999988 44544432 121 1246789999999986
No 205
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.54 E-value=4.7e-14 Score=135.16 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=76.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|+.++|||||+.+|++..+.....+.+..++....+..... ...+.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI--------------KVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCCcHhHHhhHH
Confidence 4899999999999999999987765332222222221112221110 12378999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH----HHHh---cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD----LLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~~---~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|+|+|+++ +.+++.+. .+.. .++|+|+|.||+|+.
T Consensus 68 ~~~~~~~~~i~v~d~~~---~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 68 QYYRRAQGIFLVYDISS---ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred HHhcCCcEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88999999999999988 34444332 1211 258999999999985
No 206
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.54 E-value=5.6e-14 Score=138.21 Aligned_cols=110 Identities=21% Similarity=0.263 Sum_probs=77.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+++|+.++|||||+.++....+.....+ +++..+...-.+. + ....+.||||+|.+.|..++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~p----T~~~~~~~~~~~~--------~---~~~~l~iwDtaG~e~~~~~~ 70 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP----TVFENYTASFEID--------T---QRIELSLWDTSGSPYYDNVR 70 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCC----ceeeeeEEEEEEC--------C---EEEEEEEEECCCchhhHhhh
Confidence 4599999999999999999998776543222 2222211100000 0 01238999999999999998
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH-----HHHHh--cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL-----DLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~--~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|||+|+++. .+++.+ ..+.. .++|+|+|+||+|+.
T Consensus 71 ~~~~~~ad~~ilvyDit~~---~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 71 PLSYPDSDAVLICFDISRP---ETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hhhcCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 8899999999999999884 444432 22222 268999999999985
No 207
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=5.5e-14 Score=138.03 Aligned_cols=110 Identities=25% Similarity=0.295 Sum_probs=76.4
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|..|+|||||+++|.+..+.......++.+.....+.+... ...+.||||||+..|..++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK--------------IIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHhhHH
Confidence 5899999999999999999988765322121211111111111110 12378999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH----HHH---hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD----LLK---ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~---~~~vPiIvvlNKiDl~ 425 (657)
..+..+|++|||+|+++ +.++..+. .+. ..++|+|+|+||+|+.
T Consensus 68 ~~~~~~d~iilv~d~~~---~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 68 SYYRGAHGYLLVYDVTD---QESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHccCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 89999999999999988 44444332 222 2357899999999986
No 208
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.54 E-value=1.5e-14 Score=135.01 Aligned_cols=95 Identities=21% Similarity=0.157 Sum_probs=66.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC-----cc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE-----SF 373 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~-----~f 373 (657)
.|+|+|++|+|||||+++|++..+... .| ++ +.+ ...+|||||+. .|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~~----~t--~~---~~~-------------------~~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILYK----KT--QA---VEY-------------------NDGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccccc----cc--ee---EEE-------------------cCeeecCchhhhhhHHHH
Confidence 389999999999999999997654210 01 11 111 02589999973 23
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+. ..+..+|++|+|+|++++...+....+. ..+.|+|+|+||+|+.
T Consensus 54 ~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~---~~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 54 SALI-VTAADADVIALVQSATDPESRFPPGFAS---IFVKPVIGLVTKIDLA 101 (142)
T ss_pred HHHH-HHhhcCCEEEEEecCCCCCcCCChhHHH---hccCCeEEEEEeeccC
Confidence 3333 3578999999999999877655533332 2345999999999985
No 209
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.54 E-value=1.4e-14 Score=161.36 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=80.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
.+.|+|+|++|+|||||+|+|++.... .....|.|.++....+.+. ...++||||||+.++..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~----------------g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD----------------GIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC----------------CeEEEEEeCCCCCCCcc
Confidence 356999999999999999999987642 3444566654433333322 23489999999976643
Q ss_pred h--------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 376 L--------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~--------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
. ....+..+|++|+|||++++...+....|.. ..++|+|+|+||+|+..
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 2 2235688999999999998776555444443 45789999999999963
No 210
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.54 E-value=2.2e-14 Score=143.24 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=74.4
Q ss_pred EecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCC
Q 036359 303 LGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPG 382 (657)
Q Consensus 303 iG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~ 382 (657)
+|+.++|||||+.+|+...+...... ++|..+...... + .+ ....+.||||||+..|..++..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~----Tig~~~~~~~~~------~-~~---~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVA----TLGVEVHPLVFH------T-NR---GPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCC----ceeEEEEEEEEE------E-CC---EEEEEEEEECCCchhhhhhhHHHhc
Confidence 69999999999999997766432222 222222111100 0 00 0124899999999999999999999
Q ss_pred CCceeeEeecccCCCchhHHHHH-HHHHh--cCCceEEEecccccc
Q 036359 383 LCDIAILVVDIMDGIKPQTIESL-DLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 383 ~aD~aIlVVDa~~g~~~qt~e~l-~~l~~--~~vPiIvvlNKiDl~ 425 (657)
.+|++|||+|+++....+....| ..+.. .++|+|+|+||+|+.
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999999985443333322 22333 478999999999985
No 211
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.53 E-value=7.7e-14 Score=131.99 Aligned_cols=108 Identities=28% Similarity=0.402 Sum_probs=74.9
Q ss_pred EEEEecCCCChhhhhhhhcCCccc--ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc----
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQ--EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF---- 373 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~--~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f---- 373 (657)
|+++|++|+|||||++.|.+.... .....|.|..+. ++... ..++||||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~--~~~~~-----------------~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN--FFNVN-----------------DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE--EEEcc-----------------CeEEEecCCCccccccCH
Confidence 799999999999999999954322 122222332221 11111 14899999997542
Q ss_pred ------hhhhh---cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 374 ------TNLRS---WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 374 ------~~~~~---~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+.. .....++++++|+|............+..+...++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 22222 233456889999999987777777778888888999999999999964
No 212
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.53 E-value=2.4e-14 Score=135.17 Aligned_cols=112 Identities=19% Similarity=0.147 Sum_probs=73.7
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|++|+|||||+++|++..+.....+ .+.+.....+.+.. ....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDP-TIEDSYRKTIVVDG--------------ETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcCcCC-ChhHeEEEEEEECC--------------EEEEEEEEECCChHHHHHHHHH
Confidence 89999999999999999997764332211 11111011111110 0124889999999999888888
Q ss_pred CCCCCceeeEeecccCCCchh-HHHHHHHHHh----cCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQ-TIESLDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~q-t~e~l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
.+..+|++|+|+|.++...-. ....+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 889999999999988732111 1122222221 3689999999999863
No 213
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.53 E-value=5e-14 Score=135.58 Aligned_cols=109 Identities=22% Similarity=0.217 Sum_probs=74.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|.+|+|||||+++|.+..+.....+ .++..+...-... .....+.+|||||+..|..++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~----t~~~~~~~~~~~~-----------~~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDP----TIEDSYRKQVEID-----------GRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCC----cchheEEEEEEEC-----------CEEEEEEEEeCCCcccchhhhH
Confidence 489999999999999999987665322111 1111111100000 0012378999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH----HH----HhcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD----LL----KERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l----~~~~vPiIvvlNKiDl~ 425 (657)
..+..+|++|||+|+++ +++++.+. .+ ...++|+|+|+||+|+.
T Consensus 68 ~~~~~~~~~vlv~~~~~---~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 68 LYIKSGQGFLLVYSVTS---EASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred HHHhhCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 99999999999999987 33333222 11 23478999999999985
No 214
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=3.7e-14 Score=137.26 Aligned_cols=110 Identities=22% Similarity=0.270 Sum_probs=76.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
.|+|+|..|+|||||+++|++..+. ....+.+...+....+.+... ...+.||||+|...|..++
T Consensus 6 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~--------------~~~l~~~d~~g~~~~~~~~ 71 (169)
T cd01892 6 LCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ--------------EKYLILREVGEDEVAILLN 71 (169)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe--------------EEEEEEEecCCcccccccc
Confidence 4999999999999999999987765 332221111111111111110 0237899999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH----HHHH-hcCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL----DLLK-ERSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~-~~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|||+|+++ +.+++.+ ..+. ..++|+|+|+||+|+.
T Consensus 72 ~~~~~~~d~~llv~d~~~---~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 72 DAELAACDVACLVYDSSD---PKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred hhhhhcCCEEEEEEeCCC---HHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 888899999999999987 3444433 2221 2378999999999985
No 215
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.53 E-value=3.5e-14 Score=136.00 Aligned_cols=111 Identities=22% Similarity=0.257 Sum_probs=70.7
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-chhhhh
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES-FTNLRS 378 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~-f~~~~~ 378 (657)
|+|+|++|+|||||++++++..+.....+. +.......+.+.. ....+.||||||+.. +...+.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--------------~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPN-LESLYSRQVTIDG--------------EQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCC-hHHhceEEEEECC--------------EEEEEEEEECCCCcccccchHH
Confidence 899999999999999999875543221111 1111111111110 011378999999985 345566
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHHH-----hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLLK-----ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~-----~~~vPiIvvlNKiDl~ 425 (657)
+.+..+|++|+|+|++++...+....| ..+. ..++|+|+|+||+|+.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 678899999999999984332222222 2222 2378999999999985
No 216
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.53 E-value=3.2e-14 Score=152.36 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=72.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc------
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES------ 372 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~------ 372 (657)
-|+|+|.+|+|||||+++|+.........++.|.+.....+.+.. ...|+|+||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~---------------~~~~~i~D~PGli~~a~~~~ 223 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD---------------GRSFVIADIPGLIEGASEGA 223 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC---------------ceEEEEEeCCCcccCCcccc
Confidence 389999999999999999998764333333444332222222211 13489999999742
Q ss_pred -chhhhhcCCCCCceeeEeecccCC---CchhHHHHH-HHHHh-----cCCceEEEeccccccc
Q 036359 373 -FTNLRSWGPGLCDIAILVVDIMDG---IKPQTIESL-DLLKE-----RSVDFIIALSKADKLY 426 (657)
Q Consensus 373 -f~~~~~~g~~~aD~aIlVVDa~~g---~~~qt~e~l-~~l~~-----~~vPiIvvlNKiDl~~ 426 (657)
+.....+.+..||++|+|||+++. ...+....| ..+.. .+.|+|||+||+|+..
T Consensus 224 gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 224 GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 223344556779999999999864 111222222 22222 3689999999999963
No 217
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.53 E-value=2.3e-14 Score=136.91 Aligned_cols=153 Identities=22% Similarity=0.210 Sum_probs=103.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
+.|.|+|.+|+|||||++++....+..... ..||+.++.-+.. + .-....+.||||.|++.|..+.
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qyk----aTIgadFltKev~------V----d~~~vtlQiWDTAGQERFqsLg 75 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYK----ATIGADFLTKEVQ------V----DDRSVTLQIWDTAGQERFQSLG 75 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhc----cccchhheeeEEE------E----cCeEEEEEEEecccHHHhhhcc
Confidence 458999999999999999999888764422 2244444332210 0 0011238899999999999999
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHH--HHHhc------CCceEEEecccccccCcccCCCccHHHHHHhhhHHHHH
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLD--LLKER------SVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVED 449 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~--~l~~~------~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~ 449 (657)
...++.+||++||+|.++.-...+++.|+ .+... ..||||++||+|+..+-..+ .+
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~--VS-------------- 139 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQ--VS-------------- 139 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccce--ee--------------
Confidence 99999999999999999955555555554 23333 36899999999985311000 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhh
Q 036359 450 EFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKL 499 (657)
Q Consensus 450 ~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l 499 (657)
.......... .+++|++.+||+...++...+
T Consensus 140 -----~~~Aq~WC~s--------------~gnipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 140 -----EKKAQTWCKS--------------KGNIPYFETSAKEATNVDEAF 170 (210)
T ss_pred -----HHHHHHHHHh--------------cCCceeEEecccccccHHHHH
Confidence 0111112222 257999999999988877654
No 218
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=3.3e-14 Score=152.48 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=76.0
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-------
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES------- 372 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~------- 372 (657)
|+|+|.+|+||||||++|+..........+.|.......+.+. ....|+|+||||...
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~---------------~~~~~~i~D~PGli~ga~~~~g 225 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD---------------DYKSFVIADIPGLIEGASEGAG 225 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC---------------CCcEEEEEeCCCccCCCCcccc
Confidence 8999999999999999999876544444555554433333321 112489999999742
Q ss_pred chhhhhcCCCCCceeeEeecccCCCchhHHHHH-HHHHh-----cCCceEEEeccccccc
Q 036359 373 FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE-----RSVDFIIALSKADKLY 426 (657)
Q Consensus 373 f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~-----~~vPiIvvlNKiDl~~ 426 (657)
+...+.+.+..||++|+|||+++....+....| ..+.. .+.|+|||+||+|+..
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 233445667789999999999864323333333 22332 3689999999999863
No 219
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.53 E-value=7.9e-14 Score=136.53 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=76.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|..++|||||+.+|.+..+.....+. ++..+...-. +. + ....+.||||||++.|..++.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t----~~~~~~~~~~-------~~-~---~~~~l~iwDt~G~~~~~~~~~ 67 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPT----VFENYTASFE-------ID-E---QRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCc----eEEEEEEEEE-------EC-C---EEEEEEEEECCCchhhhhcch
Confidence 4899999999999999999987765432222 2221110000 00 0 012488999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHH-H-HHHHHHh--cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTI-E-SLDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~-e-~l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|+++...-+.. . ++..+.. .++|+|+|+||+|+.
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 899999999999999883332221 1 2222222 368999999999985
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.52 E-value=1.4e-14 Score=135.80 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=96.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC----CCcch
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG----HESFT 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG----h~~f~ 374 (657)
.|.|||.+++|||||+++|.+...... .||.+.+. =.+||||| +..|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~~~------------------------~~~IDTPGEyiE~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIEYY------------------------DNTIDTPGEYIENPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC----ccceeEec------------------------ccEEECChhheeCHHHH
Confidence 389999999999999999998765422 34443211 24799999 33444
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
+.....+..||+++||+|++.+.. ...-..+..++.|+|-|+||+|+.. ..+ .
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~-----~~~-------------------~ 107 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKPVIGVITKIDLPS-----DDA-------------------N 107 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCCEEEEEECccCcc-----chh-------------------h
Confidence 445556678999999999998432 1112345667899999999999962 112 2
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
+......|...|+. .++++|++++.++.++..|.
T Consensus 108 i~~a~~~L~~aG~~--------------~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 108 IERAKKWLKNAGVK--------------EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred HHHHHHHHHHcCCC--------------CeEEEECCCCcCHHHHHHHH
Confidence 45566777777763 35999999999999877664
No 221
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.52 E-value=3.9e-14 Score=143.64 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=77.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeecccee---eecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATY---FPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~---~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
.|+|+|..++|||||+.+|.+..+.....+. ++..+ +.++. ....|.||||+|+..|..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pT----i~~~~~~~~~~~~--------------~~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPT----VFENYTASFEIDK--------------RRIELNMWDTSGSSYYDN 64 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCc----cccceEEEEEECC--------------EEEEEEEEeCCCcHHHHH
Confidence 4899999999999999999987765432222 22211 11111 012488999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHH-H----HH--hcCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLD-L----LK--ERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~----l~--~~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|||+|+++ +++++.+. . +. ..++|+|+|+||+|+.
T Consensus 65 l~~~~~~~~d~illvfdis~---~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISR---PETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred HhHHhccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 99889999999999999998 45555442 1 11 2468999999999985
No 222
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.6e-14 Score=135.52 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=105.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+++|..++|||||+-++....|... +-++||+.++...... . .. ...+.||||.|++.|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----~e~TIGaaF~tktv~~------~-~~---~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHEN----IEPTIGAAFLTKTVTV------D-DN---TIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccc----cccccccEEEEEEEEe------C-Cc---EEEEEEEEcCCccccc
Confidence 4556799999999999999999999988754 3445676666532110 0 00 1248899999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH-HHHHhcCCc---eEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKERSVD---FIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~~~vP---iIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
.+...+++.++.+|+|+|+++--.-+....| ..|....-| |.+|+||+|+.. .+..+
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~----~R~V~--------------- 129 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE----RREVE--------------- 129 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh----ccccc---------------
Confidence 9999999999999999999994333333333 344444335 556999999963 01111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
..+....... ....|+.+||+|+.++.+.+.
T Consensus 130 ----~~ea~~yAe~---------------~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 130 ----FEEAQAYAES---------------QGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred ----HHHHHHHHHh---------------cCCEEEEEecccccCHHHHHH
Confidence 1222222222 246899999999988877543
No 223
>PRK11058 GTPase HflX; Provisional
Probab=99.52 E-value=3.7e-14 Score=156.67 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=76.9
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-----
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES----- 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~----- 372 (657)
|.|+|+|++|+|||||+|+|++..+......|.|.+.....+.+.. ...++||||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~---------------~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD---------------VGETVLADTVGFIRHLPHD 262 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC---------------CCeEEEEecCcccccCCHH
Confidence 6799999999999999999998776544444555443322222211 12488999999843
Q ss_pred ----chhhhhcCCCCCceeeEeecccCCCchhHH----HHHHHHHhcCCceEEEeccccccc
Q 036359 373 ----FTNLRSWGPGLCDIAILVVDIMDGIKPQTI----ESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 373 ----f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~----e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
|.. +...+..+|++|+|+|++++...... ..+..+...++|+|+|+||+|+..
T Consensus 263 lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 263 LVAAFKA-TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 222 23356789999999999986433332 223334445789999999999963
No 224
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.52 E-value=5.1e-14 Score=153.94 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=75.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc------
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES------ 372 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~------ 372 (657)
-|+|+|.+|+|||||||+|++.+......++.|.......+.+.. ...|+|+||||+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~---------------~~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD---------------ERSFVVADIPGLIEGASEGA 225 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC---------------CcEEEEEeCCCccccccchh
Confidence 389999999999999999998775555556666554444443321 12389999999643
Q ss_pred -chhhhhcCCCCCceeeEeecccCC----CchhHHHHHHHHHh-----cCCceEEEecccccc
Q 036359 373 -FTNLRSWGPGLCDIAILVVDIMDG----IKPQTIESLDLLKE-----RSVDFIIALSKADKL 425 (657)
Q Consensus 373 -f~~~~~~g~~~aD~aIlVVDa~~g----~~~qt~e~l~~l~~-----~~vPiIvvlNKiDl~ 425 (657)
+...+.+.+..+|++|+|||++.. ...+....+..+.. .+.|+|+|+||+|+.
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 222334567889999999998721 11222222333333 368999999999986
No 225
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.51 E-value=1.3e-13 Score=133.54 Aligned_cols=112 Identities=20% Similarity=0.235 Sum_probs=75.1
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|+.|+|||||+.++.+..+.....+ .+.+.-...+.... ....+.||||||+..|..++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVP-TAFDNFSVVVLVDG--------------KPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECC--------------EEEEEEEEECCCChhhccccc
Confidence 489999999999999999987665432211 11111000111110 012378999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhHH--HHHHHHHh--cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTI--ESLDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~--e~l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|+|+|+++....+.. ..+..+.. .++|+|+|+||+|+.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 888999999999999884332222 22333333 368999999999985
No 226
>PLN03108 Rab family protein; Provisional
Probab=99.51 E-value=1e-13 Score=139.21 Aligned_cols=114 Identities=24% Similarity=0.216 Sum_probs=76.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++++|||||+++|++..+.......+..++....+.+... ...+.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~--------------~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------------PIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE--------------EEEEEEEeCCCcHHHHHHH
Confidence 45999999999999999999987664332222211111111111110 0137899999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHH-HHHHH---hcCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIES-LDLLK---ERSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~---~~~vPiIvvlNKiDl~ 425 (657)
...+..+|++|||+|+++....+.... +..+. ..++|+|+|+||+|+.
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 888889999999999987332222211 22222 2368999999999985
No 227
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.51 E-value=4.1e-14 Score=138.14 Aligned_cols=153 Identities=24% Similarity=0.224 Sum_probs=104.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|..|+|||||+++|....+.. +.++.|+....+. +....++|+|.+|+..|..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~--------------~~~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK--------------YKGYSLTIWDLGGQESFRP 73 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE--------------ETTEEEEEEEESSSGGGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee--------------eCcEEEEEEeccccccccc
Confidence 44559999999999999999998765432 3333443332221 1223489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCC-chhHHHHHHHHH----hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLK----ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~----~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
.+..++..+|++|||||+++.- .....+.|..+. ..++|++|++||+|+.. ..+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~------~~~--------------- 132 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD------AMS--------------- 132 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT------SST---------------
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC------cch---------------
Confidence 9999999999999999998732 344555554332 23689999999999863 111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...|.-..+. ....+.++++||.+|.++.+-+.+
T Consensus 133 ----~~~i~~~l~l~~l~---------~~~~~~v~~~sa~~g~Gv~e~l~W 170 (175)
T PF00025_consen 133 ----EEEIKEYLGLEKLK---------NKRPWSVFSCSAKTGEGVDEGLEW 170 (175)
T ss_dssp ----HHHHHHHTTGGGTT---------SSSCEEEEEEBTTTTBTHHHHHHH
T ss_pred ----hhHHHhhhhhhhcc---------cCCceEEEeeeccCCcCHHHHHHH
Confidence 12232222211111 135788999999999999887654
No 228
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.51 E-value=7.8e-14 Score=139.51 Aligned_cols=114 Identities=22% Similarity=0.219 Sum_probs=77.5
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
|.|+|+|++|+|||||+++|....+.... ..++..+...++... .....+.|||||||..|..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~--------------~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSE--------------GKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecC--------------CCCceEEEEECCCCHHHHHHH
Confidence 46999999999999999999987653221 112222222121110 012348999999999998888
Q ss_pred hcCCCCC-ceeeEeecccCCC--chhHHHHHHHH----H--hcCCceEEEeccccccc
Q 036359 378 SWGPGLC-DIAILVVDIMDGI--KPQTIESLDLL----K--ERSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~a-D~aIlVVDa~~g~--~~qt~e~l~~l----~--~~~vPiIvvlNKiDl~~ 426 (657)
..++..+ +++|||||+.+.. ...+.+.|..+ . ..++|++||+||+|+..
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 8888888 9999999998852 22233333211 1 24799999999999863
No 229
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=1.8e-13 Score=139.58 Aligned_cols=111 Identities=22% Similarity=0.256 Sum_probs=78.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|..++|||||+.+|....+.....+. ++..+...-... +. ...+.||||+|++.|..+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pT----i~~~~~~~i~~~--------~~---~v~l~iwDTaG~e~~~~~ 77 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPT----VFENYTAGLETE--------EQ---RVELSLWDTSGSPYYDNV 77 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCc----eeeeeEEEEEEC--------CE---EEEEEEEeCCCchhhHHH
Confidence 345899999999999999999988765432222 222221100000 00 124899999999999998
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHH-----HHHHHh--cCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIES-----LDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~-----l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
+..++..+|++|||+|+++ +.++++ +..+.. .++|+|+|+||+|+.
T Consensus 78 ~~~~~~~ad~vIlVyDit~---~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISR---PETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred HHHHcCCCcEEEEEEECCC---hHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 8889999999999999998 444443 222332 368999999999985
No 230
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.9e-14 Score=137.68 Aligned_cols=147 Identities=21% Similarity=0.211 Sum_probs=106.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.+.+||..|+|||.||-++....|..-....|...+|+..+.++... ..+.||||.||+.|...+.
T Consensus 8 KyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~--------------IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ--------------IKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce--------------EEEEEEecCCcHHHHHHHH
Confidence 37899999999999999999888765544445556676666655321 2389999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHHH----HHh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLDL----LKE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~~----l~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
.+++.+-++|||+|++. ..|+.||.. ++. .|+-|+++.||+|+..- + . +.
T Consensus 74 syYr~a~GalLVydit~---r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r----R--~----Vs---------- 130 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITR---RESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR----R--E----VS---------- 130 (216)
T ss_pred HHhccCcceEEEEEccc---hhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc----c--c----cc----------
Confidence 99999999999999998 555555532 333 35568999999999640 0 0 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
-.+.-....+.| +.+..+||.|+.++.+.+.
T Consensus 131 ---~EEGeaFA~ehg---------------LifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 131 ---KEEGEAFAREHG---------------LIFMETSAKTAENVEEAFI 161 (216)
T ss_pred ---HHHHHHHHHHcC---------------ceeehhhhhhhhhHHHHHH
Confidence 112222233333 4667999999999988654
No 231
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=1e-13 Score=154.58 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=73.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc-----
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF----- 373 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f----- 373 (657)
.|+|+|.+|+||||||++|++........++.|..+....+.+.. ..|+|+||||+...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~----------------~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD----------------TRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC----------------eEEEEEECCCCccccchhh
Confidence 399999999999999999998765544455556544333333321 24899999996421
Q ss_pred --hhhhhcCCCCCceeeEeecccCC---Cch-hHHHHHH-----HH----------HhcCCceEEEecccccc
Q 036359 374 --TNLRSWGPGLCDIAILVVDIMDG---IKP-QTIESLD-----LL----------KERSVDFIIALSKADKL 425 (657)
Q Consensus 374 --~~~~~~g~~~aD~aIlVVDa~~g---~~~-qt~e~l~-----~l----------~~~~vPiIvvlNKiDl~ 425 (657)
.....+.+..||++|+|||+++. ..+ ..+..|. +. ...+.|+|||+||+|++
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 12234566789999999999752 111 1122221 11 22468999999999985
No 232
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.4e-13 Score=135.05 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=82.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+-..|+++|.+++|||+|+.++....+.......|.+++-...+..+.. ...+.+|||.|++.|..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~--------------~i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGK--------------KIKLQIWDTAGQERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCe--------------EEEEEEEEcccchhHHH
Confidence 3455999999999999999999987765443222222222222222221 12389999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHHHH----H---hcCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLL----K---ERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l----~---~~~vPiIvvlNKiDl~ 425 (657)
+...+++.|++++||||.++ .++++++..+ . ..++|+|+|+||+|+.
T Consensus 77 i~~sYyrgA~gi~LvyDitn---e~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITN---EKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred HHHHHHhhcCeeEEEEEccc---hHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 99999999999999999998 5666655432 2 2278999999999985
No 233
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=1.3e-13 Score=151.85 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=73.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc------
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES------ 372 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~------ 372 (657)
-|+|+|.+|+||||||++|++........++.|.......+.+.. ...++|+||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~---------------~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD---------------GRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC---------------CceEEEEECCCCcccccccc
Confidence 499999999999999999998764434445555544333333220 13489999999742
Q ss_pred -chhhhhcCCCCCceeeEeecccCC--Cch-hHHHHH-HHHHh-----cCCceEEEecccccc
Q 036359 373 -FTNLRSWGPGLCDIAILVVDIMDG--IKP-QTIESL-DLLKE-----RSVDFIIALSKADKL 425 (657)
Q Consensus 373 -f~~~~~~g~~~aD~aIlVVDa~~g--~~~-qt~e~l-~~l~~-----~~vPiIvvlNKiDl~ 425 (657)
+.....+.+..||++|+|||+++. ..+ +....| ..+.. .+.|+|||+||+|+.
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 123344556779999999999753 111 222222 23332 478999999999974
No 234
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.8e-13 Score=132.10 Aligned_cols=118 Identities=22% Similarity=0.194 Sum_probs=86.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
++...|+++|..++||||||++++...++......|..++-...+.+... ...+.+|||.|++.|.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~--------------~vrLQlWDTAGQERFr 85 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--------------TVRLQLWDTAGQERFR 85 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc--------------EEEEEEEecccHHHHh
Confidence 45566999999999999999999999887654443433333333322221 1248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCC-chhHHHHHHHHHh-cC---CceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKE-RS---VDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~~-~~---vPiIvvlNKiDl~~ 426 (657)
.+...+++.+.++|+|+|.++.- ..+|..+|.-++. .+ +-|++|+||.||..
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 99999999999999999999832 2344444444433 33 44788999999975
No 235
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.48 E-value=8.7e-14 Score=126.05 Aligned_cols=106 Identities=25% Similarity=0.311 Sum_probs=74.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc----
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF---- 373 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f---- 373 (657)
.|+|+|.+|+|||||+|+|++.+. ..+...+.|.+.....+.+. ...+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~----------------~~~~~~vDtpG~~~~~~~~ 64 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN----------------NKKFILVDTPGINDGESQD 64 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET----------------TEEEEEEESSSCSSSSHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec----------------eeeEEEEeCCCCcccchhh
Confidence 389999999999999999998643 33444556655532223322 223789999997542
Q ss_pred -----hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecc
Q 036359 374 -----TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSK 421 (657)
Q Consensus 374 -----~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNK 421 (657)
.....+.+..+|++|||||+.++...+....+..+. .+.|+|+|+||
T Consensus 65 ~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 65 NDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 122344458899999999988844444555666676 88999999998
No 236
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.46 E-value=4.3e-13 Score=135.92 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=68.4
Q ss_pred eEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
.|+|+|.+|+|||||+++|++..+. ......+..++....+.+.. ....+.||||||+..+. .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~--~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG--------------EESTLVVIDHWEQEMWT--E 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC--------------EEEEEEEEeCCCcchHH--H
Confidence 4899999999999999999876553 11111110011111112111 11248899999998332 2
Q ss_pred hcCCC-CCceeeEeecccCCCchhHH-HHHHHHHh----cCCceEEEeccccccc
Q 036359 378 SWGPG-LCDIAILVVDIMDGIKPQTI-ESLDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~-~aD~aIlVVDa~~g~~~qt~-e~l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
...+. .+|++|||+|+++....... ..+..+.. .++|+|+|+||+|+..
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 23445 89999999999984322211 12222322 3689999999999853
No 237
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.46 E-value=1e-13 Score=126.91 Aligned_cols=111 Identities=26% Similarity=0.209 Sum_probs=76.0
Q ss_pred EEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhcCC
Q 036359 302 ILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGP 381 (657)
Q Consensus 302 viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~ 381 (657)
|+|++|+|||||+++|.+....... ...|. +.......... .....++||||||+..+.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-~~~t~-~~~~~~~~~~~------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-YETTI-IDFYSKTIEVD------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-cccch-hheeeEEEEEC------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 5899999999999999987652111 11111 22222221100 0112489999999998887777788
Q ss_pred CCCceeeEeecccCCCchhHHHHH-----HHHHhcCCceEEEeccccccc
Q 036359 382 GLCDIAILVVDIMDGIKPQTIESL-----DLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 382 ~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+|++|+|+|++++........+ ......++|+|+|+||+|+..
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 999999999999986655544433 234456899999999999863
No 238
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.46 E-value=3.9e-13 Score=127.90 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=77.0
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+|+|+.++|||||+++|.+..+.......+..+.....+.... ....+.||||+|+..|..++..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~D~~g~~~~~~~~~~ 67 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDG--------------KPVNLEIWDTSGQERFDSLRDI 67 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETT--------------EEEEEEEEEETTSGGGHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccc--------------cccccccccccccccccccccc
Confidence 89999999999999999998776543222111111111111111 0124899999999999888888
Q ss_pred CCCCCceeeEeecccCCCchhHHHHHHHHH-------hcCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESLDLLK-------ERSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-------~~~vPiIvvlNKiDl~~ 426 (657)
.+..+|++|+|+|.++ .++++++..+. ..++|+||++||.|+..
T Consensus 68 ~~~~~~~~ii~fd~~~---~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTD---EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHTTESEEEEEEETTB---HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccccccc---cccccccccccccccccccccccceeeeccccccc
Confidence 8899999999999988 55555443221 12588999999999864
No 239
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.45 E-value=9.2e-13 Score=135.06 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=79.7
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
.++.|+..|+|||.+|+|||||+|.+++..+.. .+....|.+-....+... ..++.|+||||.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~----------------eTQlvf~DTPGl 130 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG----------------ETQLVFYDTPGL 130 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC----------------ceEEEEecCCcc
Confidence 456788889999999999999999999988652 222223333222222211 235999999994
Q ss_pred Ccc------h------hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc-CCceEEEeccccccc
Q 036359 371 ESF------T------NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER-SVDFIIALSKADKLY 426 (657)
Q Consensus 371 ~~f------~------~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~-~vPiIvvlNKiDl~~ 426 (657)
..- . ......+..||++|+|+|+++.-.+.....|..+..+ ++|-|+|+||+|.+.
T Consensus 131 vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 131 VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 321 1 1223456789999999999964333333445444443 689999999999863
No 240
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.44 E-value=1.3e-13 Score=139.12 Aligned_cols=183 Identities=19% Similarity=0.306 Sum_probs=105.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccc---------------------------------------ccccCceeeecc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQ---------------------------------------EGEAGGITQQIG 335 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~---------------------------------------~~~~~GiT~~ig 335 (657)
.++++|+|+|..|+||||++.+|...... -|..|||+..+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 46778999999999999999999642211 122333333222
Q ss_pred ceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhcCC--------CCCceeeEeecccCCCchhHHHH---
Q 036359 336 ATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGP--------GLCDIAILVVDIMDGIKPQTIES--- 404 (657)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~--------~~aD~aIlVVDa~~g~~~qt~e~--- 404 (657)
.....++..-.. +. .......+.||||||+.....+...|. ...-++++|||....-.|.|+-+
T Consensus 97 LF~tk~dqv~~~---ie--k~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl 171 (366)
T KOG1532|consen 97 LFATKFDQVIEL---IE--KRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML 171 (366)
T ss_pred HHHHHHHHHHHH---HH--HhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH
Confidence 211111100000 00 001123589999999865433333333 33558899999887777777643
Q ss_pred --HHHHHhcCCceEEEeccccccc-----CcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccc
Q 036359 405 --LDLLKERSVDFIIALSKADKLY-----GWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKE 477 (657)
Q Consensus 405 --l~~l~~~~vPiIvvlNKiDl~~-----~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~ 477 (657)
..++....+|+|||.||+|+.. .|... +..|+.+++.+.......+.. ...+..+.||
T Consensus 172 YAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~D-fE~FqeAl~~~~~~y~s~l~~----------SmSL~leeFY---- 236 (366)
T KOG1532|consen 172 YACSILYKTKLPFIVVFNKTDVSDSEFALEWMTD-FEAFQEALNEAESSYMSNLTR----------SMSLMLEEFY---- 236 (366)
T ss_pred HHHHHHHhccCCeEEEEecccccccHHHHHHHHH-HHHHHHHHHhhccchhHHhhh----------hHHHHHHHHH----
Confidence 2356677899999999999975 45542 444444444322222111111 1112223344
Q ss_pred cCcceeEEeccchhhhhhhhhh
Q 036359 478 MGKTFSIVPTSAIRHKTMVKKL 499 (657)
Q Consensus 478 ~~~~v~iVpvSA~t~~~L~e~l 499 (657)
..+..|-+|++||.++.+.+
T Consensus 237 --~~lrtv~VSs~tG~G~ddf~ 256 (366)
T KOG1532|consen 237 --RSLRTVGVSSVTGEGFDDFF 256 (366)
T ss_pred --hhCceEEEecccCCcHHHHH
Confidence 34788999999998887755
No 241
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.44 E-value=1.7e-13 Score=157.36 Aligned_cols=104 Identities=24% Similarity=0.297 Sum_probs=77.7
Q ss_pred ecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh------h
Q 036359 304 GHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL------R 377 (657)
Q Consensus 304 G~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~------~ 377 (657)
|.+|+|||||+|+|++.++..+..+|+|.+.....+.+.. ..+.||||||+.+|... .
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~----------------~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG----------------EDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC----------------eEEEEEECCCccccCccchHHHHH
Confidence 8899999999999999887777778888776554444322 24899999999887543 1
Q ss_pred hcC--CCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 378 SWG--PGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g--~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+ ...+|++|+|+|+++. ......+..+...++|+|+|+||+|+.
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 112 2468999999999872 223444455667899999999999985
No 242
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.42 E-value=4e-13 Score=149.29 Aligned_cols=112 Identities=20% Similarity=0.247 Sum_probs=81.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
.+.|+|+|++|+|||||+|+|++... .....+|+|.++....+.+. ...+.||||||+..+..
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~----------------g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN----------------GILIKLLDTAGIREHAD 266 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC----------------CEEEEEeeCCCcccchh
Confidence 34599999999999999999998653 23344666665433333332 23489999999866542
Q ss_pred h--------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 376 L--------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~--------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
. ...++..+|++|+|+|++++...+.. .+..+...++|+|+|+||+|+.
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 2 23467889999999999987665554 5555555689999999999985
No 243
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.42 E-value=9.7e-13 Score=133.78 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=77.8
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
..+.+|+|+|++|+|||||++.|++..... .+....|..++.. .....++|+||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----~~~~~~g~i~i~~---------------~~~~~i~~vDtPg~~--- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----NISDIKGPITVVT---------------GKKRRLTFIECPNDI--- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----ccccccccEEEEe---------------cCCceEEEEeCCchH---
Confidence 345669999999999999999998642110 0111111111100 012348999999974
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCce-EEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDF-IIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPi-IvvlNKiDl~ 425 (657)
..+...+..+|++|||+|++.++..++...+..+...++|. |+|+||+|++
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 23334568899999999999999999999999998899995 5599999986
No 244
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.3e-13 Score=125.04 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=103.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.++|+|+.|+|||.|+.+++...+.+.....|...+|...+..... ...+.||||.|++.|.....
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK--------------~vKLQIWDTAGQErFRSVtR 76 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGK--------------TVKLQIWDTAGQERFRSVTR 76 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCc--------------EEEEEEeecccHHHHHHHHH
Confidence 3899999999999999999998887665555556666655554321 12489999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHHHhc---CCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLLKER---SVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~~---~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.+++.+-+++||+|++..-....+..| .-++.+ ++-+|+|.||-|+-. .+
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~----~R---------------------- 130 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP----ER---------------------- 130 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh----hh----------------------
Confidence 999999999999999983332222222 223333 455889999999952 01
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhh
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKL 499 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l 499 (657)
-+..|...-|.. ...+.+..+|++||.++.+.+
T Consensus 131 ---~VtflEAs~Faq---------Enel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 131 ---EVTFLEASRFAQ---------ENELMFLETSALTGENVEEAF 163 (214)
T ss_pred ---hhhHHHHHhhhc---------ccceeeeeecccccccHHHHH
Confidence 111111111111 145688999999999998854
No 245
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.42 E-value=1.7e-13 Score=128.09 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
....|+|||.+|+|||||+-+++...|.......|..++-..++.++..+ ..+.||||+|++.|..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~--------------~KlaiWDTAGqErFRt 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR--------------LKLAIWDTAGQERFRT 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce--------------EEEEEEeccchHhhhc
Confidence 34569999999999999999999988876655445545444445444322 3489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHH-HHHh----cCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLD-LLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l~~----~~vPiIvvlNKiDl~ 425 (657)
++..+++.+.++|+|+|++..-....+++|. .+.. .++-.++|.||+|..
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 9999999999999999999843333333332 1222 234478899999985
No 246
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.42 E-value=7.8e-13 Score=132.94 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
....|+|+|++|+|||||+++++...+...... +++..+...... ..-....+.+|||||+..|..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~----t~~~~~~~~~~~----------~~~~~i~i~~~Dt~g~~~~~~ 73 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIP----TLGVEVHPLKFY----------TNCGPICFNVWDTAGQEKFGG 73 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCC----ccceEEEEEEEE----------ECCeEEEEEEEECCCchhhhh
Confidence 345699999999999999988776555432211 122221111000 000112388999999999988
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHH-HHH--hcCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLD-LLK--ERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l~--~~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|+|+|+++....++...|. .+. ..++|+++|+||+|+.
T Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 74 LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 8887888999999999999844433333221 111 2368999999999985
No 247
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.40 E-value=1.9e-12 Score=127.34 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=72.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|+.|+|||||+++|....+....... ++..+...-... +. ...+.+|||||+..|..+..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t----~~~~~~~~~~~~--------~~---~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPT----VFENYVTDCRVD--------GK---PVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCc----ccceEEEEEEEC--------CE---EEEEEEEECCCChhccccch
Confidence 4899999999999999999866554321111 111111100000 00 11378999999988877666
Q ss_pred cCCCCCceeeEeecccCCCchhHHH--HHHHHHh--cCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIE--SLDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
..+..+|++|+|+|+++.-..+... ++..+.. .++|+|+|+||+|+.
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 6778899999999998733222221 2222322 368999999999985
No 248
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=8.9e-13 Score=128.94 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=83.3
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|+++|.+++|||-|+-++....+.......|...++...+.++.. .....||||.|++.|......
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k--------------~vkaqIWDTAGQERyrAitSa 82 (222)
T KOG0087|consen 17 IVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGK--------------TVKAQIWDTAGQERYRAITSA 82 (222)
T ss_pred EEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCc--------------EEEEeeecccchhhhccccch
Confidence 899999999999999999988876554443444444333333221 113789999999999999999
Q ss_pred CCCCCceeeEeecccCCCchhHHHHHH----HHHhc---CCceEEEecccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESLD----LLKER---SVDFIIALSKADKL 425 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~~~---~vPiIvvlNKiDl~ 425 (657)
+++.+-+++||+|++. .+|++++. .|+.+ ++++++|.||+||.
T Consensus 83 YYrgAvGAllVYDITr---~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITR---RQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred hhcccceeEEEEechh---HHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 9999999999999988 66666542 33332 68899999999995
No 249
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.38 E-value=9.9e-13 Score=131.56 Aligned_cols=119 Identities=16% Similarity=0.132 Sum_probs=79.1
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|..++|||||+++|.+..+.......+..++....+.+.... ..+ ....+.||||+|++.|..++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~------~~~---~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT------PEE---KTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC------CCC---cEEEEEEEecCCchhHHHHHH
Confidence 48999999999999999999887754432222211111112211000 000 112488999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHH-HHHHh----------------------cCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE----------------------RSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~----------------------~~vPiIvvlNKiDl~~ 426 (657)
.++..+|++|||+|.++....+.+..| ..+.. .++|+|+|+||+|+..
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 899999999999999994333333322 12211 2589999999999863
No 250
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.2e-12 Score=147.56 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=84.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh-
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL- 376 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~- 376 (657)
..|+++|++|+|||||+|+|+|.+...++.+|+|...--.++.+.. +.+.|+|.||..++...
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~----------------~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG----------------HEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC----------------ceEEEEeCCCcCCCCCCC
Confidence 3499999999999999999999999999999999876655555432 34999999998766422
Q ss_pred -----hhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 377 -----RSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 377 -----~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+++ ..+|++|-|||+++ .........++..+|+|+|+++|.+|..
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 11222 55899999999987 1112222246778899999999999985
No 251
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=1.3e-12 Score=135.85 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=83.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch--
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT-- 374 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~-- 374 (657)
.|+|+|+|++|+|||||+++|++........+.+|..+...|+.....+ +.+|||||.-+-.
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R----------------~QvIDTPGlLDRPl~ 231 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLR----------------IQVIDTPGLLDRPLE 231 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCce----------------EEEecCCcccCCChH
Confidence 4559999999999999999999999877778888888777777766543 9999999975421
Q ss_pred --hh-----hhcCCCCCceeeEeecccC--CCchhHHHHHH-H-HHhcCCceEEEeccccccc
Q 036359 375 --NL-----RSWGPGLCDIAILVVDIMD--GIKPQTIESLD-L-LKERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 --~~-----~~~g~~~aD~aIlVVDa~~--g~~~qt~e~l~-~-l~~~~vPiIvvlNKiDl~~ 426 (657)
|. ...--+..+++||++|.+. |.......+|. . -..++.|+|+|+||+|..+
T Consensus 232 ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 232 ERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred HhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 11 1112267899999999986 44433333332 2 2234679999999999975
No 252
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.37 E-value=1.3e-12 Score=122.71 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=85.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
|..+|.|+|..|+|||||+++|.+.... +|...+|+...+.. ++.+.+++||..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Iktl~--------------~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKTLE--------------YKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEEEE--------------ecceEEEEEEcCCcchhHH
Confidence 4566999999999999999999986532 34455554433322 3445699999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCC-chhHHHHHHHH----HhcCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLL----KERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l----~~~~vPiIvvlNKiDl~ 425 (657)
.+..|+..+|+.|+|||+++.. +.++...|..+ +..|.|++|+.||.|+.
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 9999999999999999998854 44555555433 34588999999999996
No 253
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.35 E-value=1.9e-11 Score=128.07 Aligned_cols=116 Identities=24% Similarity=0.319 Sum_probs=75.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccC--------ceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAG--------GITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG 369 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~--------GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG 369 (657)
..|+|+|++|+|||||+|+|++..+...... ..|..+......+.. .+.. ..++||||||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~---------~g~~---~~l~iiDTpG 72 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE---------NGVK---LKLTVIDTPG 72 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE---------CCEE---EEEEEEecCC
Confidence 4599999999999999999998876432110 111111111111110 0111 1389999999
Q ss_pred CCcchhh--------------------------hhcCC--CCCceeeEeeccc-CCCchhHHHHHHHHHhcCCceEEEec
Q 036359 370 HESFTNL--------------------------RSWGP--GLCDIAILVVDIM-DGIKPQTIESLDLLKERSVDFIIALS 420 (657)
Q Consensus 370 h~~f~~~--------------------------~~~g~--~~aD~aIlVVDa~-~g~~~qt~e~l~~l~~~~vPiIvvlN 420 (657)
+.++.+. +...+ ..+|++||+++.+ +++.+...+.+..+.. ++|+|+|+|
T Consensus 73 fgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~Vin 151 (276)
T cd01850 73 FGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIA 151 (276)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEE
Confidence 7665321 10122 2478899999877 4777777888888875 899999999
Q ss_pred cccccc
Q 036359 421 KADKLY 426 (657)
Q Consensus 421 KiDl~~ 426 (657)
|+|++.
T Consensus 152 K~D~l~ 157 (276)
T cd01850 152 KADTLT 157 (276)
T ss_pred CCCcCC
Confidence 999963
No 254
>PRK09866 hypothetical protein; Provisional
Probab=99.35 E-value=6.3e-12 Score=141.17 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=54.9
Q ss_pred CcEEEEeCCCCCc-----chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcC--CceEEEeccccccc
Q 036359 360 PGLLVVDTPGHES-----FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS--VDFIIALSKADKLY 426 (657)
Q Consensus 360 ~~l~iIDTPGh~~-----f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~--vPiIvvlNKiDl~~ 426 (657)
..++||||||... +..++...+..+|++|||||++.++.......+..+...+ .|+|+|+||+|+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 4689999999643 2334556788999999999999988888888888888877 59999999999863
No 255
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.35 E-value=1.9e-12 Score=140.53 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=83.5
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
..|+|+|.||+|||||+|+|++.... ...-+|.|.++--.++. ++++.+.++||.|.......
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~----------------i~G~pv~l~DTAGiRet~d~ 281 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN----------------LNGIPVRLVDTAGIRETDDV 281 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE----------------ECCEEEEEEecCCcccCccH
Confidence 34999999999999999999987633 33446666665444444 34456999999997644322
Q ss_pred h--------hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 377 R--------SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~--------~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
. ...+..||+++||+|++.+...+....+. +...+.|+|+|+||+|+..
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVS 338 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccc
Confidence 1 22457899999999999986666666666 5566789999999999975
No 256
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.35 E-value=9.3e-13 Score=119.16 Aligned_cols=106 Identities=25% Similarity=0.381 Sum_probs=68.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCccc----ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQ----EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~----~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.|+|+|+.|+|||||+++|.+.... .....+.+.......+.... ..+.|+|++|+..|.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~d~~g~~~~~ 64 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR----------------QSLQFWDFGGQEEFY 64 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE----------------EEEEEEEESSSHCHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc----------------eEEEEEecCccceec
Confidence 3899999999999999999987654 11111222111111111111 128899999998877
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHH-------HHH--hcCCceEEEecccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLD-------LLK--ERSVDFIIALSKAD 423 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-------~l~--~~~vPiIvvlNKiD 423 (657)
......+..+|++|||+|+++ +.+++.+. .+. ..++|+|||+||.|
T Consensus 65 ~~~~~~~~~~d~~ilv~D~s~---~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 65 SQHQFFLKKADAVILVYDLSD---PESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp CTSHHHHHHSCEEEEEEECCG---HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccccchhhcCcEEEEEEcCCC---hHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 655545788999999999998 55555432 122 13599999999998
No 257
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.35 E-value=5.2e-12 Score=129.11 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=55.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch----
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT---- 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~---- 374 (657)
.|+|+|++|+|||||+++|++.....+...+.|.......+.+ +...+++|||||+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~----------------~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY----------------KGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE----------------CCeEEEEEECCCcccccccch
Confidence 4899999999999999999987644333344443222222222 22348999999985432
Q ss_pred ---hhhhcCCCCCceeeEeecccC
Q 036359 375 ---NLRSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 375 ---~~~~~g~~~aD~aIlVVDa~~ 395 (657)
......+..+|++|+|+|+++
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCc
Confidence 234457889999999999876
No 258
>PLN00023 GTP-binding protein; Provisional
Probab=99.34 E-value=2.6e-12 Score=135.70 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=81.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.....|+|+|+.++|||||+++|.+..+.......|...+....+.+.........+..+ .-....+.||||+|++.|.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVSGHERYK 97 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECCCChhhh
Confidence 455669999999999999999999877653322222211111122221100000000000 0011248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHH----HHHhc---------------CCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLD----LLKER---------------SVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~~~---------------~vPiIvvlNKiDl~~ 426 (657)
.++..+++.+|++|||+|+++ ..+++.|. .+... ++|+|||+||+|+..
T Consensus 98 sL~~~yyr~AdgiILVyDITd---r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQ---RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 999999999999999999998 44554332 23221 489999999999953
No 259
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.33 E-value=6.8e-12 Score=120.37 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=67.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeecccee--eecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATY--FPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~--~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.|+|+|+.|+|||||+.+++...+..... ...+.+. +.+.. . ...+.||||+|...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~----~~~~~~~~~i~~~~-----------~---~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLES----PEGGRFKKEVLVDG-----------Q---SHLLLIRDEGGAPDA--- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCC----CCccceEEEEEECC-----------E---EEEEEEEECCCCCch---
Confidence 48999999999999999998766543211 1112111 11110 0 123889999999753
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh----cCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~----~~vPiIvvlNKiDl~ 425 (657)
.++..+|++|||+|+++.-.-+... ++..+.. .++|+|+|+||+|+.
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 2346789999999999844444422 2222322 357999999999984
No 260
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.32 E-value=1e-11 Score=123.60 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=72.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch---
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT--- 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~--- 374 (657)
+.|+|+|.+|+|||||+|+|++...... +.++ .+........ ..+.. -....+++|||||...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~--~~~~~~t~~~-----~~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAP--TGVVETTMKR-----TPYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Cccc--cCccccccCc-----eeeec---CCCCCceEEeCCCCCcccCCH
Confidence 4589999999999999999998654321 0011 1100000000 00000 012358999999976432
Q ss_pred --hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 375 --NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 375 --~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.+...++..+|++|+|.+ .++.......+..+...+.|+++|+||+|+.
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 123344677899888854 4566666677778888899999999999995
No 261
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.32 E-value=1.4e-11 Score=122.56 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=68.1
Q ss_pred eEEEEecCCCChhhhhh-hhcCCcccccc-cCceeeeccc---eeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 299 ICCILGHVDAGKTRLLD-CIRGTNVQEGE-AGGITQQIGA---TYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~-~L~~~~v~~~~-~~GiT~~ig~---~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
.|+|+|+.++|||||+. ++.+..+..+. .....++++. +.............+ .+ ....+.||||+|+..+
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~---~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DG---VSVSLRLWDTFGDHDK 79 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CC---EEEEEEEEeCCCChhh
Confidence 49999999999999996 55443332111 0111222221 110000000000000 01 1124899999998753
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHH--HHHHHHh--cCCceEEEecccccc
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIE--SLDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|||+|+++...-+... ++..+.. .++|+|+|+||+|+.
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4455778999999999998843322221 2222322 368999999999985
No 262
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.29 E-value=2.9e-11 Score=120.06 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=79.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccc--cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh-
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGE--AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN- 375 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~--~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~- 375 (657)
.|+|+|.+|+|||||+|+|++....... ..|.|..+......+. ...++||||||..++..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~----------------~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD----------------GRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC----------------CeEEEEEECcCCCCccCC
Confidence 4999999999999999999988643222 3456666555444432 23599999999766521
Q ss_pred ------h----hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc-C----CceEEEeccccccc
Q 036359 376 ------L----RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER-S----VDFIIALSKADKLY 426 (657)
Q Consensus 376 ------~----~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~-~----vPiIvvlNKiDl~~ 426 (657)
. .......+|++|||+++.+ +.......+..+... | .++||++|++|.+.
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 1 1123466899999999988 777777777766553 3 46899999999874
No 263
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.28 E-value=5.1e-12 Score=123.56 Aligned_cols=112 Identities=23% Similarity=0.226 Sum_probs=64.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|+.|+|||+|+..|.......- +|..-....+.+. .-....+.+||+|||..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----~tS~e~n~~~~~~-------------~~~~~~~~lvD~PGH~rlr~~ 65 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT----VTSMENNIAYNVN-------------NSKGKKLRLVDIPGHPRLRSK 65 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B-------SSEEEECCGS-------------STCGTCECEEEETT-HCCCHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe----eccccCCceEEee-------------cCCCCEEEEEECCCcHHHHHH
Confidence 45699999999999999999997643211 1111000000000 012235899999999988754
Q ss_pred hhcC---CCCCceeeEeecccCCCc---hhHHHHHHH-H---H--hcCCceEEEeccccccc
Q 036359 377 RSWG---PGLCDIAILVVDIMDGIK---PQTIESLDL-L---K--ERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g---~~~aD~aIlVVDa~~g~~---~qt~e~l~~-l---~--~~~vPiIvvlNKiDl~~ 426 (657)
.... +..+-++|||||+.. +. ..+-++|.. + . ..++|++|++||.|+..
T Consensus 66 ~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 66 LLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred HHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 4443 678999999999874 22 223333321 1 1 34688999999999963
No 264
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.26 E-value=3.8e-12 Score=117.56 Aligned_cols=109 Identities=21% Similarity=0.269 Sum_probs=79.7
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeecccee----eecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATY----FPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~----~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
.+|||.+++|||+|+-++....++.. .+.++|..+ +++... . ..+.||||.|++.|..
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~s----YitTiGvDfkirTv~i~G~-----------~---VkLqIwDtAGqErFrt 72 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGS----YITTIGVDFKIRTVDINGD-----------R---VKLQIWDTAGQERFRT 72 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccc----eEEEeeeeEEEEEeecCCc-----------E---EEEEEeecccHHHHHH
Confidence 68999999999999999998877644 333444322 222211 1 1389999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHH-HHHHhc--CCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
+...++..++++|+|+|.++|-......-| ..++.. .+|-|+|.||.|...
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 999999999999999999997654433333 222221 467899999999863
No 265
>COG2262 HflX GTPases [General function prediction only]
Probab=99.24 E-value=2.3e-11 Score=130.08 Aligned_cols=115 Identities=23% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc---
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES--- 372 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~--- 372 (657)
.-|.|+++|+.|+|||||+|+|++..+.....-.-|-+.....+.+. .+..+++-||-|+.+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~---------------~g~~vlLtDTVGFI~~LP 255 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG---------------DGRKVLLTDTVGFIRDLP 255 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC---------------CCceEEEecCccCcccCC
Confidence 45679999999999999999999876543322222222211122211 134589999999643
Q ss_pred ------chhhhhcCCCCCceeeEeecccCCCch-hHHHHHHHHHh---cCCceEEEeccccccc
Q 036359 373 ------FTNLRSWGPGLCDIAILVVDIMDGIKP-QTIESLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 373 ------f~~~~~~g~~~aD~aIlVVDa~~g~~~-qt~e~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
|.. +..-...+|++|+|||++++... +-......+.. ..+|+|+|+||+|++.
T Consensus 256 ~~LV~AFks-TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 256 HPLVEAFKS-TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred hHHHHHHHH-HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 222 33456779999999999995322 22223334444 4579999999999874
No 266
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.8e-11 Score=116.61 Aligned_cols=147 Identities=22% Similarity=0.223 Sum_probs=103.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccc--eeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGA--TYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~--~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.|+++|--++||||++..|-...+... .+++|+ -.+.+. +..+++||..|+..+..+
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~yk----------------n~~f~vWDvGGq~k~R~l 77 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEYK----------------NISFTVWDVGGQEKLRPL 77 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEEc----------------ceEEEEEecCCCcccccc
Confidence 489999999999999999987664422 223333 223332 335999999999999999
Q ss_pred hhcCCCCCceeeEeecccCCC-chhHHHHHH-HHHh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 377 RSWGPGLCDIAILVVDIMDGI-KPQTIESLD-LLKE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~-~l~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
+..++..++++|||||+++.. .+.+.+.|. ++.. .++|++|+.||.|+.. +-
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~-------al---------------- 134 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG-------AL---------------- 134 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc-------cC----------------
Confidence 999999999999999999832 233444433 2222 3689999999999963 21
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+|...|.-..+.. ....|-+++|.+|.+|.+-+.+
T Consensus 135 --s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~w 172 (181)
T KOG0070|consen 135 --SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDW 172 (181)
T ss_pred --CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHH
Confidence 1234555555444432 4567789999999999886654
No 267
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.22 E-value=2.1e-11 Score=122.17 Aligned_cols=115 Identities=25% Similarity=0.194 Sum_probs=82.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|..|+|||||+++|.+..+..+....++..+....+..... ...+.+|||+|+..|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 45999999999999999999998887654444333222222111100 1238899999999999999
Q ss_pred hcCCCCCceeeEeecccC-CCchh-HHHHHHHHHhc---CCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMD-GIKPQ-TIESLDLLKER---SVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~-g~~~q-t~e~l~~l~~~---~vPiIvvlNKiDl~~ 426 (657)
..+...++++++|+|... -.... +...+..+... ++|+|+|.||+|+..
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 999999999999999986 22233 33333344443 589999999999975
No 268
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.20 E-value=6.1e-11 Score=104.08 Aligned_cols=89 Identities=25% Similarity=0.422 Sum_probs=75.2
Q ss_pred ceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cccEEEecCCC
Q 036359 506 QCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQGLQ 583 (657)
Q Consensus 506 ~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~gl~ 583 (657)
.+.|+|+..++|.|++++++|++|+|++||.|+ |..+++||+|+++.+ ..++.| ++..+.+.||+
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g-------------~~v~~a~Ps~~V~I~G~~ 68 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENG-------------KRVKEAGPSTPVEILGLK 68 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCC-------------CCCCEECCCCcEEEcCCC
Confidence 578999999999999999999999999999999 999999999999986 234444 45555556999
Q ss_pred CC-CCCCeEEEcCCCccHHHHHHHH
Q 036359 584 DA-IAGTSLYVVGPNDDLEDVKKAA 607 (657)
Q Consensus 584 ~~-~aG~~l~v~~~~~~~~~~~~~~ 607 (657)
.+ .+|+.|+++.++..++.+...+
T Consensus 69 ~~P~aGd~~~~~~se~~Ak~~~~~r 93 (95)
T cd03702 69 GVPQAGDKFLVVESEKEAKEIAEYR 93 (95)
T ss_pred CCCCCCCEEEEeCCHHHHHHHHHHh
Confidence 87 8999999999987777766543
No 269
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.7e-11 Score=109.78 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=79.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.++|||...+|||||+-+..+..+...- ..++|.. |....+...+ +...+.||||.|++.|...+.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~af----vsTvGid-FKvKTvyr~~---------kRiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAF----VSTVGID-FKVKTVYRSD---------KRIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccce----eeeeeee-EEEeEeeecc---------cEEEEEEEecccchhhhHHHH
Confidence 4899999999999999999988775321 1122221 1111111110 112489999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHH-H---HHhcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLD-L---LKERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~---l~~~~vPiIvvlNKiDl~~ 426 (657)
.+++.++++||++|+++.-.-...+.|. + ....+.|+|+|.||||+-+
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 9999999999999999843333333222 2 2345899999999999954
No 270
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.19 E-value=6.2e-11 Score=109.59 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=101.4
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
+.++|--++|||||+|.+..+.+... ..++.|+....+.. ....+.+||.||+..|..++.+
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk--------------gnvtiklwD~gGq~rfrsmWer 84 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK--------------GNVTIKLWDLGGQPRFRSMWER 84 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc--------------CceEEEEEecCCCccHHHHHHH
Confidence 78999999999999999987654422 23345554443321 1123789999999999999999
Q ss_pred CCCCCceeeEeecccCCC-chhHHHHHHHH----HhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 380 GPGLCDIAILVVDIMDGI-KPQTIESLDLL----KERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l----~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
+.+.++.+|||||+.+.- ..-.++-|..+ .-.++|++|..||+|+.. +-
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~-------AL------------------- 138 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG-------AL------------------- 138 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc-------cc-------------------
Confidence 999999999999998832 23344444322 234899999999999963 21
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
.-+..+...|+... ....+.++.+|++...+|.-.+.
T Consensus 139 --~~~~li~rmgL~si-------tdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 139 --SKIALIERMGLSSI-------TDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred --cHHHHHHHhCcccc-------ccceEEEEEEEEcCCccHHHHHH
Confidence 11122334455432 12578899999998777655443
No 271
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.18 E-value=7.2e-11 Score=120.40 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=85.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc--
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES-- 372 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~-- 372 (657)
..+.+|+++|.+|+|||||||+|+.+++..-..-|++..+..++... +....++||||||..+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~---------------~~~~~l~lwDtPG~gdg~ 101 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS---------------YDGENLVLWDTPGLGDGK 101 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh---------------ccccceEEecCCCcccch
Confidence 35555789999999999999999976644211112222221111111 1123599999999876
Q ss_pred -----chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc--CCceEEEeccccccc---CcccCCC
Q 036359 373 -----FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER--SVDFIIALSKADKLY---GWKSCKN 433 (657)
Q Consensus 373 -----f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~--~vPiIvvlNKiDl~~---~w~~~~~ 433 (657)
+.......+...|++++++++.+.........++..... +.|+|+++|.+|+.. +|....+
T Consensus 102 ~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~ 172 (296)
T COG3596 102 DKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGH 172 (296)
T ss_pred hhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccC
Confidence 556666788899999999999998777677777655444 468999999999853 6765433
No 272
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.18 E-value=8.3e-11 Score=121.58 Aligned_cols=109 Identities=21% Similarity=0.186 Sum_probs=72.3
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceee--eccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc----
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQ--QIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF---- 373 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~--~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f---- 373 (657)
|+++|.+|+||||||++|+...-..+....+|. ++| ++.++.. ..+++-|.||...=
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yddf---------------~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDDF---------------SQITVADIPGIIEGAHMN 261 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceeeeccccc--eeecccc---------------ceeEeccCcccccccccc
Confidence 789999999999999999988755555444443 444 3333221 13899999995421
Q ss_pred ---hhhhhcCCCCCceeeEeecccCCCc---hhHHHHHH-HHHh-----cCCceEEEecccccc
Q 036359 374 ---TNLRSWGPGLCDIAILVVDIMDGIK---PQTIESLD-LLKE-----RSVDFIIALSKADKL 425 (657)
Q Consensus 374 ---~~~~~~g~~~aD~aIlVVDa~~g~~---~qt~e~l~-~l~~-----~~vPiIvvlNKiDl~ 425 (657)
.....+.+..|++.+||||++.+.. -+++..|. -+.. ...|.+||+||||+.
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 1234456677999999999998622 22222221 1222 245899999999995
No 273
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.1e-10 Score=108.04 Aligned_cols=114 Identities=22% Similarity=0.207 Sum_probs=80.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|..|+|||.|+.+++...++.|....|..++-...+.... .. ..+.||||.|++.|...+.
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~g-----------ek---iklqiwdtagqerfrsitq 74 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNG-----------EK---IKLQIWDTAGQERFRSITQ 74 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECC-----------eE---EEEEEeeccchHHHHHHHH
Confidence 389999999999999999999888866433222222222222211 11 1389999999999999999
Q ss_pred cCCCCCceeeEeecccCCCc----hhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIK----PQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~----~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
++++.++.+|||+|++.... |..+..+..-....+--|+|.||+|+-.
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 99999999999999987443 3333333333333455799999999864
No 274
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.4e-11 Score=130.90 Aligned_cols=141 Identities=17% Similarity=0.274 Sum_probs=96.4
Q ss_pred CCccccchhhhccCCCCeE-EEEecCCCChhhhhhhhcCCcc---cccccCceeeeccceeeecccccchhhcccccccc
Q 036359 282 PSADATFKQAEENLRSPIC-CILGHVDAGKTRLLDCIRGTNV---QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL 357 (657)
Q Consensus 282 ~~~~~~~~~~~~~~r~p~V-~viG~vdsGKSTLl~~L~~~~v---~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~ 357 (657)
.++....+..+....+|+| +|+|++|+||||||..|+.--. ...-.|-||.-.| .
T Consensus 53 klhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg-------K-------------- 111 (1077)
T COG5192 53 KLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG-------K-------------- 111 (1077)
T ss_pred ccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec-------c--------------
Confidence 4444455555555556655 5999999999999999874211 1111122322111 1
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccH
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~ 436 (657)
...|+|+.|| .+...| ...+..+|+++|+||++-|+...|.++|+++..+|.| ++.|++..|+.. +
T Consensus 112 -~RRiTflEcp--~Dl~~m-iDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk------~--- 178 (1077)
T COG5192 112 -TRRITFLECP--SDLHQM-IDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK------N--- 178 (1077)
T ss_pred -eeEEEEEeCh--HHHHHH-HhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc------C---
Confidence 1249999999 344444 4467889999999999999999999999999999999 777999999964 1
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 036359 437 KKALEQQSKDVEDEFKMRLR 456 (657)
Q Consensus 437 ~~~L~~q~~~~~~~~~~~~~ 456 (657)
..+|....+.++.+|...++
T Consensus 179 ~stLr~~KKrlkhRfWtEiy 198 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIY 198 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHc
Confidence 23455555555555555443
No 275
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.7e-11 Score=126.40 Aligned_cols=67 Identities=28% Similarity=0.330 Sum_probs=59.9
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-------CchhHHHHHHHHHhcCCc-eEEEeccccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------IKPQTIESLDLLKERSVD-FIIALSKADKLY 426 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-------~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~ 426 (657)
+.+++||.|||.+|...+..+.+.+|++||+|.+..| ..+||.+|..+...+++. +|+.+||||...
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 5699999999999999999999999999999999443 368999999999999875 899999999864
No 276
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.14 E-value=8.1e-12 Score=128.02 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=38.5
Q ss_pred cEEEEeCCCCCcchhhhhcC------C--CCCceeeEeecccCCCchhHHHH-----HHHHHhcCCceEEEeccccccc
Q 036359 361 GLLVVDTPGHESFTNLRSWG------P--GLCDIAILVVDIMDGIKPQTIES-----LDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g------~--~~aD~aIlVVDa~~g~~~qt~e~-----l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+.|+||||+..|..++..+ + ...=++|+++|+..-..+...-. +..+..+++|+|.|+||+|++.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 69999999998765443322 2 33457899999987554444432 2234457999999999999974
No 277
>PRK13768 GTPase; Provisional
Probab=99.13 E-value=7.2e-11 Score=122.24 Aligned_cols=67 Identities=25% Similarity=0.261 Sum_probs=48.6
Q ss_pred CcEEEEeCCCCCcchh---h---hhcCCCC--CceeeEeecccCCCchhHHHHHHHHH-----hcCCceEEEeccccccc
Q 036359 360 PGLLVVDTPGHESFTN---L---RSWGPGL--CDIAILVVDIMDGIKPQTIESLDLLK-----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~---~---~~~g~~~--aD~aIlVVDa~~g~~~qt~e~l~~l~-----~~~vPiIvvlNKiDl~~ 426 (657)
..+.||||||+..+.. . ..+.+.. ++++|+|+|+.++..+.+.....++. ..++|+|+|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3699999999765432 1 1112222 89999999999887777766554443 57899999999999974
No 278
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.12 E-value=2.5e-10 Score=116.90 Aligned_cols=132 Identities=15% Similarity=0.230 Sum_probs=82.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeee---ccc--------eeeecc--------cccc----hhhcc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQ---IGA--------TYFPVE--------NIQK----RTEKL 351 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~---ig~--------~~~~~~--------~~~~----~~~~~ 351 (657)
+..|.|+|+|+.++|||||+++|.+..+.....+.+|.. +.. .++.+. .+.. .+..+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 566789999999999999999999875322112223311 100 011000 0000 00000
Q ss_pred c---ccc----------ccCCCcEEEEeCCCCCcc-------------hhhhhcCCC-CCceeeEeecccCCCchhH-HH
Q 036359 352 N---ADA----------KLKVPGLLVVDTPGHESF-------------TNLRSWGPG-LCDIAILVVDIMDGIKPQT-IE 403 (657)
Q Consensus 352 ~---~~~----------~~~~~~l~iIDTPGh~~f-------------~~~~~~g~~-~aD~aIlVVDa~~g~~~qt-~e 403 (657)
. .++ ....+.++||||||.... ..+...++. ..+++++|+|++.++..+. .+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0 000 012357999999998532 123445666 4569999999999888776 57
Q ss_pred HHHHHHhcCCceEEEeccccccc
Q 036359 404 SLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 404 ~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+.+...+.|+|+|+||+|...
T Consensus 184 ia~~ld~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 184 LAKEVDPQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHcCCcEEEEEECCCCCC
Confidence 77788888999999999999974
No 279
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.12 E-value=1.8e-10 Score=108.25 Aligned_cols=113 Identities=21% Similarity=0.272 Sum_probs=80.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..+.|||.+-+|||+||..++...+..-..+ ++|..++. +.+.+..+..+ .+.+|||.|++.|...+
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdp----tvgvdffa------rlie~~pg~ri---klqlwdtagqerfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDP----TVGVDFFA------RLIELRPGYRI---KLQLWDTAGQERFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCC----ccchHHHH------HHHhcCCCcEE---EEEEeeccchHHHHHHH
Confidence 3478999999999999999998887643322 23333322 22223333333 38999999999999999
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHHHH-----HhcCCc----eEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLDLL-----KERSVD----FIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l-----~~~~vP----iIvvlNKiDl~~ 426 (657)
.++++++-++++|+|+++ ...++|+... ...+-| |.+|..|+|+.+
T Consensus 76 ksyyrnsvgvllvyditn---r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITN---RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHhhcccceEEEEeccc---hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 999999999999999998 5556655421 122324 778999999964
No 280
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.6e-10 Score=104.52 Aligned_cols=145 Identities=19% Similarity=0.181 Sum_probs=103.7
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
..|||..|+|||.|+..++...+.......|...+|...+...... ..+.||||.|++.|.....+
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqk--------------iklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK--------------IKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 5799999999999999999888766555556666676666554211 13899999999999999999
Q ss_pred CCCCCceeeEeecccCCCchhHHHHHHH----HHhcCCc---eEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHH
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESLDL----LKERSVD---FIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFK 452 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l~~----l~~~~vP---iIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~ 452 (657)
+++.+-++++|+|++. ..|..||.. ++.+--| ++++.||.|+.. ++...
T Consensus 80 yyrgaagalmvyditr---rstynhlsswl~dar~ltnpnt~i~lignkadle~----qrdv~----------------- 135 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES----QRDVT----------------- 135 (215)
T ss_pred HhccccceeEEEEehh---hhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh----cccCc-----------------
Confidence 9999999999999988 556666642 2333334 788999999963 11211
Q ss_pred HHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhh
Q 036359 453 MRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKL 499 (657)
Q Consensus 453 ~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l 499 (657)
..+...+..+ ..+.|+..||+||.++.+.+
T Consensus 136 --yeeak~faee---------------ngl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 136 --YEEAKEFAEE---------------NGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred --HHHHHHHHhh---------------cCeEEEEecccccCcHHHHH
Confidence 1222222222 23678999999999987754
No 281
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.09 E-value=1.8e-10 Score=114.78 Aligned_cols=115 Identities=23% Similarity=0.176 Sum_probs=79.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+++|..|+|||+|+-++++..+.....+. +...+...-.+. -....+.|+||+|...|..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~pt----ied~y~k~~~v~-----------~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPT----IEDSYRKELTVD-----------GEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCC----ccccceEEEEEC-----------CEEEEEEEEcCCCcccChHH
Confidence 345999999999999999999998876543222 221111111110 01124789999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHHH-HH----HhcCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESLD-LL----KERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l----~~~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|+.|+|+++++...-+....|. .+ ....+|+|+|+||+|+..
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 999999999999999999843332222221 11 123579999999999964
No 282
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.05 E-value=7e-10 Score=97.64 Aligned_cols=88 Identities=27% Similarity=0.442 Sum_probs=75.1
Q ss_pred ceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cccEEEecCCC
Q 036359 506 QCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQGLQ 583 (657)
Q Consensus 506 ~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~gl~ 583 (657)
.+.|+|+..++|.|++++++|++|+|++||+|+ |..+++||+|++... +.+..| ++..+.+.|+.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g-------------~~v~~a~Ps~~v~i~g~~ 68 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENG-------------KALLEAGPSTPVEILGLK 68 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCC-------------CCccccCCCCCEEEeeec
Confidence 589999999999999999999999999999999 999999999998763 344444 57777788998
Q ss_pred CC-CCCCeEEEcCCCccHHHHHHH
Q 036359 584 DA-IAGTSLYVVGPNDDLEDVKKA 606 (657)
Q Consensus 584 ~~-~aG~~l~v~~~~~~~~~~~~~ 606 (657)
.. .+|+.|+++.++..+..+...
T Consensus 69 ~~p~aGd~~~~~~~e~~a~~~~~~ 92 (95)
T cd03701 69 DVPKAGDGVLVVASEKEAKEIGSY 92 (95)
T ss_pred CCccCCCEEEEeCCCHHHHHhhHh
Confidence 75 899999999998887766554
No 283
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.4e-10 Score=110.32 Aligned_cols=153 Identities=22% Similarity=0.225 Sum_probs=99.3
Q ss_pred EEEEecCCCChhhhhhhhcCCcccc-c--ccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQE-G--EAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~-~--~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
|+|+|.-++|||||+.++-...... + ...-||...|...-.. .+.+..+.|||..|+.....+
T Consensus 20 vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i--------------~v~~~~l~fwdlgGQe~lrSl 85 (197)
T KOG0076|consen 20 VLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI--------------EVCNAPLSFWDLGGQESLRSL 85 (197)
T ss_pred heeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce--------------eeccceeEEEEcCChHHHHHH
Confidence 8999999999999998875432211 0 0112444444322111 122235899999999999999
Q ss_pred hhcCCCCCceeeEeecccCCC----chhHHH-HHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 377 RSWGPGLCDIAILVVDIMDGI----KPQTIE-SLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~----~~qt~e-~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
+..++..|+++|+|||+++.- ..++++ .+..-...|+|+++.+||-|+.. + +.
T Consensus 86 w~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~-------~-----~~---------- 143 (197)
T KOG0076|consen 86 WKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN-------A-----ME---------- 143 (197)
T ss_pred HHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh-------h-----hh----------
Confidence 999999999999999999832 122222 33344556999999999999953 1 11
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
..+|...|.....+ ...+.+|.|+||++|.++.+.+.
T Consensus 144 ---~~El~~~~~~~e~~---------~~rd~~~~pvSal~gegv~egi~ 180 (197)
T KOG0076|consen 144 ---AAELDGVFGLAELI---------PRRDNPFQPVSALTGEGVKEGIE 180 (197)
T ss_pred ---HHHHHHHhhhhhhc---------CCccCccccchhhhcccHHHHHH
Confidence 11222222111111 23678999999999998877554
No 284
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.03 E-value=5.1e-10 Score=107.57 Aligned_cols=64 Identities=30% Similarity=0.363 Sum_probs=46.9
Q ss_pred CCcEEEEeCCCCCcc----hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHh-cCCceEEEeccc
Q 036359 359 VPGLLVVDTPGHESF----TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKE-RSVDFIIALSKA 422 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f----~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~-~~vPiIvvlNKi 422 (657)
..+++||||||..+. ..++..++..+|++|+|+++++.+..+....|..... ..-.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 356999999997542 2445667799999999999999777666666655444 444589999985
No 285
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.02 E-value=1.3e-09 Score=116.28 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=59.7
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCcee--eeccceeeecc----cccchhhcccccccc---CCCcEEEEeCCCC
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGIT--QQIGATYFPVE----NIQKRTEKLNADAKL---KVPGLLVVDTPGH 370 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT--~~ig~~~~~~~----~~~~~~~~~~~~~~~---~~~~l~iIDTPGh 370 (657)
|+|+|.+++|||||+++|++..+.....++.| +++|..++... .....+ ...++..+ ....+.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSC-NPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhh-cccccccccCcCcceEEEEECCCC
Confidence 58999999999999999998876555555554 44555554321 111111 11111111 1235999999997
Q ss_pred ----Ccchhh---hhcCCCCCceeeEeecccC
Q 036359 371 ----ESFTNL---RSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 371 ----~~f~~~---~~~g~~~aD~aIlVVDa~~ 395 (657)
..+..+ ....++.||++|+|||+..
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 334333 3345788999999999973
No 286
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.02 E-value=3.1e-09 Score=108.33 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=85.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCccccc-ccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh-
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEG-EAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL- 376 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~-~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~- 376 (657)
.|++||+.++||||+...+.....+.. ..-|.|.++...++... ..-.+.|||+||+..|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~---------------~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL---------------SFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT---------------TSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC---------------CCcEEEEEEcCCcccccccc
Confidence 389999999999999999987654322 11233443333333211 1225899999999887654
Q ss_pred ----hhcCCCCCceeeEeecccCCCchhHHHHH----HHHHhc--CCceEEEecccccccCcccCCCccHHHHHHhhhHH
Q 036359 377 ----RSWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKER--SVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKD 446 (657)
Q Consensus 377 ----~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~~--~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~ 446 (657)
....++.++++|||+|+...-....+..+ ..+... ++.+.|+++|||++. .+.
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-------~~~---------- 128 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-------EDE---------- 128 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS--------HHH----------
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC-------HHH----------
Confidence 33456889999999999843333333333 233333 567999999999974 111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchh
Q 036359 447 VEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIR 491 (657)
Q Consensus 447 ~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t 491 (657)
-...|......+...+...+++ .+.++.||-+.
T Consensus 129 r~~~~~~~~~~i~~~~~~~~~~------------~~~~~~TSI~D 161 (232)
T PF04670_consen 129 REEIFRDIQQRIRDELEDLGIE------------DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-T------------SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHhhhcccc------------ceEEEeccCcC
Confidence 1223344445566666655443 47888999887
No 287
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.1e-09 Score=118.95 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=81.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
..+.|+|+|.+|+|||||+|+|...... .+...|.|.+.--..+. ++++.++|+||.|...-.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~----------------~~G~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT----------------VNGVPVRLSDTAGIREES 330 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee----------------cCCeEEEEEecccccccc
Confidence 4466999999999999999999987643 45667777765444444 344569999999976511
Q ss_pred --------hh-hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcC------------CceEEEeccccccc
Q 036359 375 --------NL-RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS------------VDFIIALSKADKLY 426 (657)
Q Consensus 375 --------~~-~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~------------vPiIvvlNKiDl~~ 426 (657)
-+ ....+..+|++++|||++.+...+.....+.+...+ -|+|++.||+|+..
T Consensus 331 ~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s 403 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVS 403 (531)
T ss_pred CChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccC
Confidence 11 223467799999999998866665555444443321 46899999999875
No 288
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.99 E-value=4.7e-10 Score=121.69 Aligned_cols=151 Identities=15% Similarity=0.185 Sum_probs=94.3
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
+++|. ++|||.+|+|||||++.++...+........|..+-..++.+... .+.+|||||.-+
T Consensus 166 p~trT--lllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYl----------------rwQViDTPGILD 227 (620)
T KOG1490|consen 166 PNTRT--LLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYL----------------RWQVIDTPGILD 227 (620)
T ss_pred CCcCe--EEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhee----------------eeeecCCccccC
Confidence 34455 999999999999999999988877665565565554444444332 389999999644
Q ss_pred ch----hh--h---hcCCCCCceeeEeecccCCCchhHHHHHHHHH-----hcCCceEEEecccccccCcccCCCccHHH
Q 036359 373 FT----NL--R---SWGPGLCDIAILVVDIMDGIKPQTIESLDLLK-----ERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 373 f~----~~--~---~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-----~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
-. +. + ..-++.--+|+|++|.+.-+...-.+.+.+.. -.|.|+|+|+||||.+. ..++..
T Consensus 228 ~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~------~edL~~ 301 (620)
T KOG1490|consen 228 RPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR------PEDLDQ 301 (620)
T ss_pred cchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC------ccccCH
Confidence 21 11 1 11235556789999988633222222222222 23789999999999974 333211
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhh
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV 496 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~ 496 (657)
.-..+++.+... .+++++.+|+++..++.
T Consensus 302 ---------------~~~~ll~~~~~~--------------~~v~v~~tS~~~eegVm 330 (620)
T KOG1490|consen 302 ---------------KNQELLQTIIDD--------------GNVKVVQTSCVQEEGVM 330 (620)
T ss_pred ---------------HHHHHHHHHHhc--------------cCceEEEecccchhcee
Confidence 112444444443 34788999999855443
No 289
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.97 E-value=3.3e-09 Score=110.36 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=58.2
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC-cchh--
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE-SFTN-- 375 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~-~f~~-- 375 (657)
.|+++|++++||||||++|+++....+.....|-..-...+. ++.-.|.|+|+||.. ....
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~----------------Y~ga~IQild~Pgii~gas~g~ 128 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLE----------------YKGAQIQLLDLPGIIEGASSGR 128 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEe----------------ecCceEEEEcCcccccCcccCC
Confidence 499999999999999999999876555444444333333333 334459999999963 2222
Q ss_pred ----hhhcCCCCCceeeEeecccCCC
Q 036359 376 ----LRSWGPGLCDIAILVVDIMDGI 397 (657)
Q Consensus 376 ----~~~~g~~~aD~aIlVVDa~~g~ 397 (657)
.....++.||.+|+|+|+..+.
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecCCCh
Confidence 2344568899999999998643
No 290
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.4e-09 Score=104.27 Aligned_cols=111 Identities=21% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
++.|.++|..|||||+|+-.|+...+..- ...+....+.++ ++...+++||.|||......
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn~a~~r------------------~gs~~~~LVD~PGH~rlR~k 98 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPNEATYR------------------LGSENVTLVDLPGHSRLRRK 98 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCe-eeeeccceeeEe------------------ecCcceEEEeCCCcHHHHHH
Confidence 34599999999999999999987643210 111122222221 11223799999999987654
Q ss_pred hhcCCC---CCceeeEeecccCCC--chhHHHHHH-H---H--HhcCCceEEEeccccccc
Q 036359 377 RSWGPG---LCDIAILVVDIMDGI--KPQTIESLD-L---L--KERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~---~aD~aIlVVDa~~g~--~~qt~e~l~-~---l--~~~~vPiIvvlNKiDl~~ 426 (657)
...++. .+-.+|+|||+..-. ...+-+.|. . . ...++|+.+++||.|+..
T Consensus 99 l~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 99 LLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred HHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 444443 788999999987522 122223332 1 1 234578999999999963
No 291
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.96 E-value=4e-10 Score=105.36 Aligned_cols=117 Identities=23% Similarity=0.172 Sum_probs=80.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
-+..|+++|.--+|||||+-++....|....-. | +.+.+..... .+. + ....+.||||.|++.|..
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHls--T--lQASF~~kk~------n~e-d---~ra~L~IWDTAGQErfHA 77 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLS--T--LQASFQNKKV------NVE-D---CRADLHIWDTAGQERFHA 77 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHH--H--HHHHHhhccc------ccc-c---ceeeeeeeeccchHhhhc
Confidence 456699999999999999999987776532211 1 1222211100 000 0 012489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHH-HHH-hcC--CceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLD-LLK-ERS--VDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l~-~~~--vPiIvvlNKiDl~~ 426 (657)
+-.-+++.+|++|||+|+++.-..|-...|. .++ .+| +-+++|.||+|+..
T Consensus 78 LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 78 LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred cCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 9888999999999999999966666655553 232 233 56899999999953
No 292
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=5.9e-10 Score=104.26 Aligned_cols=122 Identities=18% Similarity=0.136 Sum_probs=75.0
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
++.+|.+|+||||++.+.+...+... .|+ ++|..+.+-........ ...+..-...++.+|||.|++.|..++..
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~q---FIs-TVGIDFreKrvvY~s~g-p~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQ---FIS-TVGIDFREKRVVYNSSG-PGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccce---eEE-EeecccccceEEEeccC-CCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 57899999999999999987766421 111 12221111100000000 00000111125899999999999999998
Q ss_pred CCCCCceeeEeecccCCCc-hhHHHHHHHHHhc---CCc-eEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIK-PQTIESLDLLKER---SVD-FIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~-~qt~e~l~~l~~~---~vP-iIvvlNKiDl~~ 426 (657)
.++.+-+.+|++|.+..-. -.++.+|.+++.. .-| ||++.||+|+..
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 8899999999999987211 1233344444433 235 999999999963
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.96 E-value=3.2e-09 Score=114.57 Aligned_cols=156 Identities=17% Similarity=0.315 Sum_probs=80.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccccc-c-cCceee-eccceeeecccccchhhccccccccCCCcEEEEeCCCCC--c
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEG-E-AGGITQ-QIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE--S 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~-~-~~GiT~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~--~ 372 (657)
..|+|+|.+|+|||||||+|+|-.-.+. . ..|++. +...+.+++ .+.+.++|||.||.. .
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~---------------p~~pnv~lWDlPG~gt~~ 100 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH---------------PKFPNVTLWDLPGIGTPN 100 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE----------------SS-TTEEEEEE--GGGSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC---------------CCCCCCeEEeCCCCCCCC
Confidence 4599999999999999999998543211 1 123221 111111111 123469999999964 2
Q ss_pred ch---hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccc-ccCcccCCCccHHHHHHhhhHHHH
Q 036359 373 FT---NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADK-LYGWKSCKNAPIKKALEQQSKDVE 448 (657)
Q Consensus 373 f~---~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl-~~~w~~~~~~~~~~~L~~q~~~~~ 448 (657)
|. .+-...+...|++|+|.+ ..+.......+..+..+|.|+++|-+|+|. +++-+......|.+ .
T Consensus 101 f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~---------e 169 (376)
T PF05049_consen 101 FPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNE---------E 169 (376)
T ss_dssp --HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--H---------H
T ss_pred CCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCH---------H
Confidence 32 223346778998888765 334445555567788899999999999997 32111111222221 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchh
Q 036359 449 DEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIR 491 (657)
Q Consensus 449 ~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t 491 (657)
..++..-..+...|...|+. ..+++-+|...
T Consensus 170 ~~L~~IR~~c~~~L~k~gv~------------~P~VFLVS~~d 200 (376)
T PF05049_consen 170 KLLQEIRENCLENLQKAGVS------------EPQVFLVSSFD 200 (376)
T ss_dssp THHHHHHHHHHHHHHCTT-S------------S--EEEB-TTT
T ss_pred HHHHHHHHHHHHHHHHcCCC------------cCceEEEeCCC
Confidence 11223334566667766654 35778888877
No 294
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.96 E-value=6.1e-09 Score=107.54 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=71.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
..+.|+|+|.+|+|||||+|+|++..+. .+...+.|.....+...+ ....++||||||..++.
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~----------------~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV----------------DGFKLNIIDTPGLLESV 93 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE----------------CCeEEEEEECCCcCcch
Confidence 4566999999999999999999997643 222223343333222222 22358999999987652
Q ss_pred h---h-------hhcCC--CCCceeeEeecccC-CCchhHHHHHHHHHh-cC----CceEEEeccccccc
Q 036359 375 N---L-------RSWGP--GLCDIAILVVDIMD-GIKPQTIESLDLLKE-RS----VDFIIALSKADKLY 426 (657)
Q Consensus 375 ~---~-------~~~g~--~~aD~aIlVVDa~~-g~~~qt~e~l~~l~~-~~----vPiIvvlNKiDl~~ 426 (657)
. . ..+++ ...|++++|..++. .+.......+..+.. +| .++|||+|++|...
T Consensus 94 ~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 94 MDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 1 0 11222 24678888865554 333444445544433 34 36999999999864
No 295
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.94 E-value=1.5e-09 Score=112.56 Aligned_cols=176 Identities=22% Similarity=0.163 Sum_probs=107.1
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES- 372 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~- 372 (657)
+.-.|+|+|+|+.|+||||||++|++..+.....-.-|-+..... ..+ .++..++|.||-|+-+
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~----------a~L-----psg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHS----------AHL-----PSGNFVLLTDTVGFISD 239 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhh----------ccC-----CCCcEEEEeechhhhhh
Confidence 345788999999999999999999977654332111111111000 001 1223488999999643
Q ss_pred --------chhhhhcCCCCCceeeEeecccCCCch-hHHHHHHHHHhcCCc-------eEEEecccccccCcccCCCccH
Q 036359 373 --------FTNLRSWGPGLCDIAILVVDIMDGIKP-QTIESLDLLKERSVD-------FIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 373 --------f~~~~~~g~~~aD~aIlVVDa~~g~~~-qt~e~l~~l~~~~vP-------iIvvlNKiDl~~~w~~~~~~~~ 436 (657)
|... ......+|++|.|+|++++... |-...+..++..|+| +|=|=||+|...++.+.
T Consensus 240 LP~~LvaAF~AT-LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~----- 313 (410)
T KOG0410|consen 240 LPIQLVAAFQAT-LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE----- 313 (410)
T ss_pred CcHHHHHHHHHH-HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-----
Confidence 2222 2244568999999999997644 444466788888886 66677888875321110
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccccc---cceeEEEEE
Q 036359 437 KKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFRNE---VQCTILEVK 513 (657)
Q Consensus 437 ~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~~~---~~~~Vlev~ 513 (657)
.....|++||++|.+|.+.+..... -.+.+.+..
T Consensus 314 -------------------------------------------E~n~~v~isaltgdgl~el~~a~~~kv~~~t~~~e~~ 350 (410)
T KOG0410|consen 314 -------------------------------------------EKNLDVGISALTGDGLEELLKAEETKVASETTVDEDQ 350 (410)
T ss_pred -------------------------------------------ccCCccccccccCccHHHHHHHHHHHhhhhheeeeEE
Confidence 1112589999999999987765433 122333333
Q ss_pred eecCceeEEEEEEEeeeecCCCEEE
Q 036359 514 VCEGYGTTIDVVLINGVLHEGDKIV 538 (657)
Q Consensus 514 ~~~g~GtVv~g~v~~G~Lk~Gd~I~ 538 (657)
.-.+.|-- ..|.|..+|.++
T Consensus 351 Lr~d~gd~-----~~~wly~e~~vv 370 (410)
T KOG0410|consen 351 LRNDDGDD-----ADGWLYSEDEVV 370 (410)
T ss_pred eecCCCcc-----chhheeecceEE
Confidence 33344443 345556666666
No 296
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.94 E-value=9.8e-10 Score=111.95 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=86.5
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCccc--ccc-cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQ--EGE-AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~--~~~-~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
.-+.|.++++|.+|+|||||||.++..... .+. ..|.|+.|..+++. ..++++|.||+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~-------------------~~~~~vDlPG~ 193 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG-------------------KSWYEVDLPGY 193 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc-------------------ceEEEEecCCc
Confidence 345678999999999999999999976632 122 56777777654443 24899999992
Q ss_pred ----------CcchhhhhcCC---CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 371 ----------ESFTNLRSWGP---GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 371 ----------~~f~~~~~~g~---~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+|..+...++ ..--.+.|.||++-++.+.....+.++...++|+.+|+||||+..
T Consensus 194 ~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 194 GRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred ccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 12334444343 233467888999999999999999999999999999999999964
No 297
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=100.02 Aligned_cols=113 Identities=27% Similarity=0.179 Sum_probs=83.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
|-..|+++|--++|||||+..|.+..+. .+|++-|+....... . ..+++++||..|+.....
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~-----hltpT~GFn~k~v~~----------~---g~f~LnvwDiGGqr~IRp 77 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPR-----HLTPTNGFNTKKVEY----------D---GTFHLNVWDIGGQRGIRP 77 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChh-----hccccCCcceEEEee----------c---CcEEEEEEecCCccccch
Confidence 4455999999999999999999886653 356555655444321 1 124699999999999999
Q ss_pred hhhcCCCCCceeeEeecccCC-CchhHHHHHHH----HHhcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDG-IKPQTIESLDL----LKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g-~~~qt~e~l~~----l~~~~vPiIvvlNKiDl~~ 426 (657)
.+..++...|++|||||+++. ....+-+++.. -+...+|+.++.||.|++.
T Consensus 78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 999999999999999998762 22233333332 2345689999999999974
No 298
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.93 E-value=3.3e-09 Score=104.63 Aligned_cols=112 Identities=24% Similarity=0.330 Sum_probs=79.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|...+|||+|+-.+....++....+.+.-+... .+..+ . +. ...+.+|||.|+++|..+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~-~v~V~--d--------g~---~v~L~LwDTAGqedYDrl 69 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSA-NVTVD--D--------GK---PVELGLWDTAGQEDYDRL 69 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceE-EEEec--C--------CC---EEEEeeeecCCCcccccc
Confidence 3458999999999999999999887775543333211111 11111 0 00 113889999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHHH-----HHHh--cCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESLD-----LLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-----~l~~--~~vPiIvvlNKiDl~ 425 (657)
+...+..+|++|++++..+ +++++.+. -++. .++|+|+|++|.|+.
T Consensus 70 RplsY~~tdvfl~cfsv~~---p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 70 RPLSYPQTDVFLLCFSVVS---PESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred cccCCCCCCEEEEEEEcCC---hhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 8778899999999999887 55555432 2222 379999999999995
No 299
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.8e-09 Score=98.47 Aligned_cols=152 Identities=24% Similarity=0.242 Sum_probs=98.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
|-..|.++|-.|+||||++-++--.++.... -|+.+....+++. +-.+.+||..|+.+...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk---Ptigfnve~v~yK----------------NLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK---PTIGFNVETVPYK----------------NLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC---CCCCcCccccccc----------------cccceeeEccCcccccH
Confidence 3445899999999999999887655543211 1222222333332 23489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCC--chhHHHHHHHHHh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGI--KPQTIESLDLLKE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~--~~qt~e~l~~l~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
.+..++..+|.+|+|||.++.. .....+...++.. .+..++|++||+|..+ +-.
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~-------~~t-------------- 136 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG-------ALT-------------- 136 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh-------hhh--------------
Confidence 9999999999999999998733 2222233333332 2456899999999853 211
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..++... .|+.. + . ...+.||.+||.+|.+|...+++
T Consensus 137 ----~~E~~~~---L~l~~-L--k----~r~~~Iv~tSA~kg~Gld~~~DW 173 (182)
T KOG0072|consen 137 ----RSEVLKM---LGLQK-L--K----DRIWQIVKTSAVKGEGLDPAMDW 173 (182)
T ss_pred ----HHHHHHH---hChHH-H--h----hheeEEEeeccccccCCcHHHHH
Confidence 1222222 22221 0 0 14589999999999999877665
No 300
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.91 E-value=5.1e-09 Score=109.74 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=72.6
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceee--eccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-----
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQ--QIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES----- 372 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~--~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~----- 372 (657)
|+++|.+++||||||++++..+......+.+|. .+|...+.. ...|+|-|.||...
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-----------------~~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-----------------GESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-----------------CCcEEEecCcccccccccC
Confidence 789999999999999999988755444444443 444443311 12499999999532
Q ss_pred --chhhhhcCCCCCceeeEeecccCCCc---hhHHHHHH-HHHh-----cCCceEEEecccccc
Q 036359 373 --FTNLRSWGPGLCDIAILVVDIMDGIK---PQTIESLD-LLKE-----RSVDFIIALSKADKL 425 (657)
Q Consensus 373 --f~~~~~~g~~~aD~aIlVVDa~~g~~---~qt~e~l~-~l~~-----~~vPiIvvlNKiDl~ 425 (657)
...-..+.+..|-+.++|||++.--. -+....|. -|.. .+.|.|||+||||++
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 12234456677999999999985321 23333332 2333 367999999999965
No 301
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.90 E-value=1.5e-09 Score=98.25 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=91.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC----Ccch
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH----ESFT 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh----~~f~ 374 (657)
.+++||.+|+|||||++.|.|....-. .||.+ .+.. =..|||||- ..+.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAv-----e~~d------------------~~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAV-----EFND------------------KGDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc----cccee-----eccC------------------ccccCCchhhhhhhHHH
Confidence 389999999999999999998764322 23322 1211 237999994 3332
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.-....+..+|++++|-.++++.++ -.-..+.....|+|-+++|+|+.. .+ .
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLae------d~-------------------d 107 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAE------DA-------------------D 107 (148)
T ss_pred HHHHHHhhccceeeeeecccCcccc---CCcccccccccceEEEEecccccc------hH-------------------h
Confidence 3334456779999999999985322 112334445567999999999963 22 2
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
+..+...|.+.| --+|+-+|+....++.+++.|.
T Consensus 108 I~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 108 ISLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred HHHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHH
Confidence 455666777766 2478999999988888776654
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.90 E-value=2.9e-09 Score=113.91 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=60.6
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHH
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIK 437 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~ 437 (657)
..+.++||||+|...-... ....+|++|+|++...|..-|... . -.+.+..|||+||+|+.. ....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~-gi~E~aDIiVVNKaDl~~------~~~a- 212 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---K-GIMELADLIVINKADGDN------KTAA- 212 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---h-hhhhhhheEEeehhcccc------hhHH-
Confidence 4567999999998632211 356799999997643332222211 0 112233589999999963 0000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 438 KALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 438 ~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
......+...|... .+. ......|++++||+++.++.+++...
T Consensus 213 --------------~~~~~el~~~L~l~--~~~------~~~w~~pVi~vSA~~g~GIdeL~~~I 255 (332)
T PRK09435 213 --------------RRAAAEYRSALRLL--RPK------DPGWQPPVLTCSALEGEGIDEIWQAI 255 (332)
T ss_pred --------------HHHHHHHHHHHhcc--ccc------ccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 01112222222211 000 00123689999999999988876543
No 303
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=5.7e-09 Score=96.03 Aligned_cols=146 Identities=19% Similarity=0.181 Sum_probs=98.8
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccc--eeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGA--TYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~--~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
|+.+|-.++||||++..|....... .+.+.|+ -.+++.+ ..+++||..|+.....++
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~-----~ipTvGFnvetVtykN----------------~kfNvwdvGGqd~iRplW 78 (180)
T KOG0071|consen 20 ILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVTYKN----------------VKFNVWDVGGQDKIRPLW 78 (180)
T ss_pred EEEEecccCCceehhhHHhcCCCcc-----cccccceeEEEEEeee----------------eEEeeeeccCchhhhHHH
Confidence 8999999999999999987544221 2223333 2333333 348999999999999999
Q ss_pred hcCCCCCceeeEeecccCCC-chhHHHHHH----HHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHH
Q 036359 378 SWGPGLCDIAILVVDIMDGI-KPQTIESLD----LLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFK 452 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~----~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~ 452 (657)
.+++..+.++|+|+|+.+.- ....++-|. .-....+|++|..||-|+...-
T Consensus 79 rhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------------------ 134 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------------------ 134 (180)
T ss_pred HhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------------------
Confidence 99999999999999987631 122222222 2233468899999999996411
Q ss_pred HHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 453 MRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 453 ~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
.+.+|.+.|. +.. .-+....+.|+||.+|++|.+-|.+
T Consensus 135 -~pqei~d~le---Le~-------~r~~~W~vqp~~a~~gdgL~eglsw 172 (180)
T KOG0071|consen 135 -KPQEIQDKLE---LER-------IRDRNWYVQPSCALSGDGLKEGLSW 172 (180)
T ss_pred -CHHHHHHHhc---ccc-------ccCCccEeeccccccchhHHHHHHH
Confidence 1233444332 111 1134567899999999999887654
No 304
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.88 E-value=1.1e-08 Score=112.20 Aligned_cols=97 Identities=19% Similarity=0.125 Sum_probs=59.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCcee--eeccceeeecccccchhhccc---cc---cccCCCcEEEEeCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGIT--QQIGATYFPVENIQKRTEKLN---AD---AKLKVPGLLVVDTPG 369 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT--~~ig~~~~~~~~~~~~~~~~~---~~---~~~~~~~l~iIDTPG 369 (657)
+.|+|+|.+++|||||+++|++..+.....++.| +.+|..+++......+...+. .+ .......+.|+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 3599999999999999999998877655555555 455554443210000000000 00 001123488999999
Q ss_pred CCc----ch---hhhhcCCCCCceeeEeeccc
Q 036359 370 HES----FT---NLRSWGPGLCDIAILVVDIM 394 (657)
Q Consensus 370 h~~----f~---~~~~~g~~~aD~aIlVVDa~ 394 (657)
... +. +.....+..||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 532 22 23334478899999999997
No 305
>PTZ00099 rab6; Provisional
Probab=98.85 E-value=1.2e-08 Score=100.02 Aligned_cols=65 Identities=25% Similarity=0.191 Sum_probs=49.6
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHH-HHHHH-Hh--cCCceEEEecccccc
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLL-KE--RSVDFIIALSKADKL 425 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l-~~--~~vPiIvvlNKiDl~ 425 (657)
.+.||||||++.|..++..+++.+|++|||+|+++...-+... ++..+ .. .++|+|+|+||+|+.
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 4899999999999999999999999999999999843222222 22222 22 357899999999985
No 306
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.83 E-value=2.1e-08 Score=105.30 Aligned_cols=137 Identities=23% Similarity=0.354 Sum_probs=79.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccccccc--C----ce--eeeccceeeecccccchhhccccccccCCCcEEEEeCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEA--G----GI--TQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG 369 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~--~----Gi--T~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG 369 (657)
..|.|+|.+|+|||||||.|++..+..... . .. +..+....+... ..+..+ .++||||||
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~---------e~~~~l---~LtiiDTpG 72 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELE---------ENGVKL---NLTIIDTPG 72 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEE---------ETCEEE---EEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEec---------cCCcce---EEEEEeCCC
Confidence 359999999999999999999876443210 0 00 001111111111 011222 389999999
Q ss_pred CCcchhh------------------------hhc---CCCCCceeeEeeccc-CCCchhHHHHHHHHHhcCCceEEEecc
Q 036359 370 HESFTNL------------------------RSW---GPGLCDIAILVVDIM-DGIKPQTIESLDLLKERSVDFIIALSK 421 (657)
Q Consensus 370 h~~f~~~------------------------~~~---g~~~aD~aIlVVDa~-~g~~~qt~e~l~~l~~~~vPiIvvlNK 421 (657)
+.+..+. ..| .-...|+|||+|+.+ +|+.+..++.+..+... +++|.|+.|
T Consensus 73 fGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaK 151 (281)
T PF00735_consen 73 FGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAK 151 (281)
T ss_dssp CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEEST
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEec
Confidence 7653211 001 113478999999986 68889898888877765 889999999
Q ss_pred cccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCc
Q 036359 422 ADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLN 468 (657)
Q Consensus 422 iDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~ 468 (657)
.|.+. ..++......|...|...++.
T Consensus 152 aD~lt---------------------~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 152 ADTLT---------------------PEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp GGGS----------------------HHHHHHHHHHHHHHHHHTT--
T ss_pred ccccC---------------------HHHHHHHHHHHHHHHHHcCce
Confidence 99974 223333345677777777654
No 307
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.79 E-value=4.5e-08 Score=103.26 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=67.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
...++|+|+|.+|+|||||+|+|++..+.. +...+.+.+.. ... .......++||||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~--~~~--------------~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPM--MVS--------------RTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--EEE--------------EEECCeEEEEEECCCCCch
Confidence 445669999999999999999999877531 11111111100 000 0112345999999998754
Q ss_pred hhh-------hhcCC--CCCceeeEeecccC-CCchhHHHHHHHHHh-cC----CceEEEecccccc
Q 036359 374 TNL-------RSWGP--GLCDIAILVVDIMD-GIKPQTIESLDLLKE-RS----VDFIIALSKADKL 425 (657)
Q Consensus 374 ~~~-------~~~g~--~~aD~aIlVVDa~~-g~~~qt~e~l~~l~~-~~----vPiIvvlNKiDl~ 425 (657)
... ...++ ...|++|||+..+. .+.......+..+.. +| .++||++|+.|..
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 211 11111 25899999965443 243333444443332 23 4699999999976
No 308
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.78 E-value=4.7e-09 Score=95.60 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=74.3
Q ss_pred EEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhcCC
Q 036359 302 ILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGP 381 (657)
Q Consensus 302 viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~ 381 (657)
++|.+++|||.|+-++-...+..+. ...++|..+.. ..+.+ .+.. ..+.+|||.|++.|.+.+..++
T Consensus 2 llgds~~gktcllir~kdgafl~~~---fistvgid~rn------kli~~-~~~k---vklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN---FISTVGIDFRN------KLIDM-DDKK---VKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc---eeeeeeecccc------ceecc-CCcE---EEEEEeeccchHHHhhhhHhhh
Confidence 6899999999999887766554332 11112211110 00000 0111 2489999999999999999999
Q ss_pred CCCceeeEeecccCCCchhHHHHH-HHHHhc---CCceEEEecccccc
Q 036359 382 GLCDIAILVVDIMDGIKPQTIESL-DLLKER---SVDFIIALSKADKL 425 (657)
Q Consensus 382 ~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~~---~vPiIvvlNKiDl~ 425 (657)
+.+|..+|++|+.+.........| ..+..+ .+.+.++.||||+.
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 999999999999885554444433 344444 36688999999995
No 309
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.76 E-value=5.6e-08 Score=97.97 Aligned_cols=111 Identities=26% Similarity=0.253 Sum_probs=68.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccc--cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch--
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGE--AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT-- 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~--~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~-- 374 (657)
.|+|+|..|+||||++|.|++..+.... ..++|.........+ ....|+||||||..+..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~----------------~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV----------------DGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE----------------TTEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee----------------cceEEEEEeCCCCCCCccc
Confidence 4899999999999999999998754322 233454443333322 22459999999964421
Q ss_pred -----hhh----hcCCCCCceeeEeecccCCCchhHHHHHHHHHh-cCC----ceEEEeccccccc
Q 036359 375 -----NLR----SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKE-RSV----DFIIALSKADKLY 426 (657)
Q Consensus 375 -----~~~----~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~-~~v----PiIvvlNKiDl~~ 426 (657)
... .......+++|||+... .+.......+..+.. +|- -+||+++..|.+.
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 111 12345688999999988 677666666665443 342 3888999999764
No 310
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.76 E-value=1.8e-08 Score=108.61 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=75.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCC----cccc------------cccCceeeec-cceeeecccccchhhccccccccCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT----NVQE------------GEAGGITQQI-GATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~----~v~~------------~~~~GiT~~i-g~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
..|+|+|++++|||||+++|.+. ++.+ ....|.|+.. ...++|-... ...+..+.. .
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAv---EI~~~~~~~---~ 91 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAV---EININEGTK---F 91 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcce---EEeccCCCc---c
Confidence 34899999999999999999988 3331 1223422111 0111111100 000011111 3
Q ss_pred cEEEEeCCCCCcch---hh--------------------------hhcCCC-CCceeeEee-ccc------CCCchhHHH
Q 036359 361 GLLVVDTPGHESFT---NL--------------------------RSWGPG-LCDIAILVV-DIM------DGIKPQTIE 403 (657)
Q Consensus 361 ~l~iIDTPGh~~f~---~~--------------------------~~~g~~-~aD~aIlVV-Da~------~g~~~qt~e 403 (657)
.+.||||+|+.+-. .+ +...+. .+|++|+|. |++ ++.......
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 58999999964321 11 112234 689999999 875 445666777
Q ss_pred HHHHHHhcCCceEEEeccccc
Q 036359 404 SLDLLKERSVDFIIALSKADK 424 (657)
Q Consensus 404 ~l~~l~~~~vPiIvvlNKiDl 424 (657)
.+..|+..++|||+++|++|-
T Consensus 172 ~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 172 VIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHhcCCCEEEEEECcCC
Confidence 888999999999999999994
No 311
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.76 E-value=4.9e-08 Score=85.26 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=68.4
Q ss_pred cccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEE
Q 036359 503 NEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKIT 578 (657)
Q Consensus 503 ~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~ 578 (657)
.||+++|.++|.+.|.|++++|+|.+|+|+.||.|+ +|.. ....|+||++|+..+..|. .+.|.
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~------------~~~~V~sI~~~~~~~~~a~aG~~v~i~ 70 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG------------VTGEVKSVEMHHEPLEEALPGDNVGFN 70 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC------------cEEEEEEEEECCcCcCEECCCCEEEEE
Confidence 478999999999999999999999999999999999 6643 4588999999999998774 48899
Q ss_pred ecCCCC--CCCCCeEEE
Q 036359 579 AQGLQD--AIAGTSLYV 593 (657)
Q Consensus 579 ~~gl~~--~~aG~~l~v 593 (657)
+.|++. +.+|+.|+-
T Consensus 71 l~~i~~~~v~~G~vl~~ 87 (91)
T cd03693 71 VKNVSKKDIKRGDVAGD 87 (91)
T ss_pred ECCCCHHHcCCcCEEcc
Confidence 999854 688998764
No 312
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.75 E-value=2.1e-08 Score=111.06 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=77.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
+...+|+|+|.-|+||||||-+|+...+... |...+-...++.+. +......+|+||+-..+-.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPadv------------tPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPADV------------TPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCcc------------CcCcCceEEEecccccchh
Confidence 4556699999999999999999998876543 11112222222111 1111237899998655544
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH-----HHHHh-----cCCceEEEecccccccC
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL-----DLLKE-----RSVDFIIALSKADKLYG 427 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~-----~~vPiIvvlNKiDl~~~ 427 (657)
.....-++.||++++|++.++ +.|.+.+ -+++. .++|||+|.||+|...+
T Consensus 71 ~~l~~EirkA~vi~lvyavd~---~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDD---ESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCC---hHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 444567789999999999888 5555543 34444 35899999999999764
No 313
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.74 E-value=4.8e-08 Score=84.60 Aligned_cols=80 Identities=18% Similarity=0.329 Sum_probs=66.4
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEec
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQ 580 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~ 580 (657)
|+++|.++|.++|.|+|++|+|.+|+|++||.+. +|.... .+...+|++|++|+..+..|. .+.+.++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g--------~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~ 72 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDG--------SFRPVTVKSIHRNRSPVRVVRAGQSASLALK 72 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCC--------CEeEEEEEEEEECCeECCEECCCCEEEEEEc
Confidence 5689999999999999999999999999999999 775310 134689999999999998773 4888888
Q ss_pred CCCC--CCCCCeEE
Q 036359 581 GLQD--AIAGTSLY 592 (657)
Q Consensus 581 gl~~--~~aG~~l~ 592 (657)
|++. +.+|+.|+
T Consensus 73 ~i~~~~i~~G~vl~ 86 (87)
T cd03694 73 KIDRSLLRKGMVLV 86 (87)
T ss_pred CCCHHHcCCccEEe
Confidence 8864 67888775
No 314
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.74 E-value=2.3e-08 Score=100.36 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=59.0
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
.+.+.||+|.|..... ..+....+..++|+|+.++..... ......+.|.|+++||+|+... ....
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~----~~~~--- 167 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEA----VGFD--- 167 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcccc----chhh---
Confidence 3579999999932111 111223566678999887543221 2223356789999999999630 0000
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
+..+...+...+ ...+++++||+++.++...+.+
T Consensus 168 ----------------~~~~~~~l~~~~-------------~~~~i~~~Sa~~g~gv~~l~~~ 201 (207)
T TIGR00073 168 ----------------VEKMKADAKKIN-------------PEAEIILMSLKTGEGLDEWLEF 201 (207)
T ss_pred ----------------HHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHH
Confidence 112222232211 2368999999999998887654
No 315
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.72 E-value=2.7e-08 Score=105.66 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=39.8
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+.++||||||..... ...+..+|++++|.+...+ ..+..+.. ...++|.+||+||+|+..
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~-~l~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKA-GLMEIADIYVVNKADGEG 186 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHH-HHhhhccEEEEEcccccc
Confidence 45779999999965322 1245678998888654332 22222221 124788999999999963
No 316
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.67 E-value=1.2e-07 Score=81.19 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=65.7
Q ss_pred ccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc-c--cEEEe
Q 036359 504 EVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G--IKITA 579 (657)
Q Consensus 504 ~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g--v~i~~ 579 (657)
||+++|.++|.++ .|++++|+|.+|+|++||.|. +|.. ...+|++|++|+..+..|. | +.+.+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~------------~~~~V~si~~~~~~~~~a~aGd~v~~~l 67 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK------------ESVEVKSIYVDDEEVDYAVAGENVRLKL 67 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC------------cEEEEEEEEECCeECCEECCCCEEEEEE
Confidence 5789999999998 999999999999999999999 6653 3579999999999998774 4 88889
Q ss_pred cCCC--CCCCCCeEE
Q 036359 580 QGLQ--DAIAGTSLY 592 (657)
Q Consensus 580 ~gl~--~~~aG~~l~ 592 (657)
.|++ ++..|+.|+
T Consensus 68 ~~~~~~~v~~G~vl~ 82 (83)
T cd03698 68 KGIDEEDISPGDVLC 82 (83)
T ss_pred CCCCHHHCCCCCEEe
Confidence 9987 478898875
No 317
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.6e-08 Score=94.35 Aligned_cols=110 Identities=23% Similarity=0.189 Sum_probs=78.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
-.++++|--|+|||||++.|-......-- -|.|.....+.+. +-.++.+|..||..-...+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~Ig----------------~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELSIG----------------GMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHheec----------------CceEEEEccccHHHHHHHH
Confidence 34899999999999999999876543210 1333332222222 2348999999999888888
Q ss_pred hcCCCCCceeeEeecccCC-CchhHHHHHHHHH----hcCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDG-IKPQTIESLDLLK----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g-~~~qt~e~l~~l~----~~~vPiIvvlNKiDl~~ 426 (657)
..++..+|.+|++||+.+. .....+.++..+. ..++|+++..||||+++
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 8899999999999999873 2333444444332 35799999999999974
No 318
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.60 E-value=4.4e-07 Score=96.42 Aligned_cols=118 Identities=28% Similarity=0.430 Sum_probs=76.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccc------cCceeee--ccceeeecccccchhhccccccccCCCcEEEEeC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGE------AGGITQQ--IGATYFPVENIQKRTEKLNADAKLKVPGLLVVDT 367 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~------~~GiT~~--ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDT 367 (657)
....|.++|.+|+|||||+|.|+++.+..+. +.++.+. +-.+...+. ..++.+ .|++|||
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~---------e~~~~~---~l~vIDt 89 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELE---------EDGFHL---NLTVIDT 89 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeee---------cCCeEE---EEEEecc
Confidence 4566999999999999999999988654331 1111111 111111111 012222 3899999
Q ss_pred CCCCcchhhh------------------------hcCC----CCCceeeEeecc-cCCCchhHHHHHHHHHhcCCceEEE
Q 036359 368 PGHESFTNLR------------------------SWGP----GLCDIAILVVDI-MDGIKPQTIESLDLLKERSVDFIIA 418 (657)
Q Consensus 368 PGh~~f~~~~------------------------~~g~----~~aD~aIlVVDa-~~g~~~qt~e~l~~l~~~~vPiIvv 418 (657)
||+.+|..+. .|.. ...++|+|.+.. .+|+.+..++.+..+... +.+|-|
T Consensus 90 pGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPV 168 (373)
T COG5019 90 PGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPV 168 (373)
T ss_pred CCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeee
Confidence 9988764320 0111 225688888875 468999998888776653 778999
Q ss_pred eccccccc
Q 036359 419 LSKADKLY 426 (657)
Q Consensus 419 lNKiDl~~ 426 (657)
+-|.|.+.
T Consensus 169 I~KaD~lT 176 (373)
T COG5019 169 IAKADTLT 176 (373)
T ss_pred eeccccCC
Confidence 99999974
No 319
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.59 E-value=1.7e-07 Score=81.04 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=65.4
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEec
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQ 580 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~ 580 (657)
|+++|.++|.+.|.|+|+.|+|.+|+|++||.|. .|.. ......|+||++|+..+..|. .+.+.++
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~----------~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~ 70 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFG----------ETLKTTVTGIEMFRKTLDEAEAGDNVGVLLR 70 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCC----------CCceEEEEEEEECCcCCCEECCCCEEEEEEC
Confidence 5789999999999999999999999999999998 4421 134688999999999998774 4889999
Q ss_pred CCCC--CCCCCeEE
Q 036359 581 GLQD--AIAGTSLY 592 (657)
Q Consensus 581 gl~~--~~aG~~l~ 592 (657)
|++. +.+|+.|+
T Consensus 71 ~~~~~~v~rG~vl~ 84 (87)
T cd03697 71 GVKREDVERGMVLA 84 (87)
T ss_pred CCCHHHcCCccEEe
Confidence 9854 67888875
No 320
>PTZ00258 GTP-binding protein; Provisional
Probab=98.57 E-value=7.5e-08 Score=105.02 Aligned_cols=100 Identities=15% Similarity=-0.002 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchh-hccccccccCCCcEEEEeCCCCCc-
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRT-EKLNADAKLKVPGLLVVDTPGHES- 372 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~l~iIDTPGh~~- 372 (657)
..+..|+|+|.+|+|||||+|+|++..+..+..++.|.......+.+...+-.. ..+..+.......+.|+||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 355669999999999999999999888777777887765554444443322100 011112222233589999999642
Q ss_pred ------chhhhhcCCCCCceeeEeeccc
Q 036359 373 ------FTNLRSWGPGLCDIAILVVDIM 394 (657)
Q Consensus 373 ------f~~~~~~g~~~aD~aIlVVDa~ 394 (657)
..+.....++.||++|+|||+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1223344567899999999984
No 321
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.56 E-value=2.6e-08 Score=95.15 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=81.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...++|+|.-++||||+|.++..+-|..+. ...||..++..... + ......+.+|||.|++.|..
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdy----kktIgvdflerqi~------v----~~Edvr~mlWdtagqeEfDa 84 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDY----KKTIGVDFLERQIK------V----LIEDVRSMLWDTAGQEEFDA 84 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccccccc----ccccchhhhhHHHH------h----hHHHHHHHHHHhccchhHHH
Confidence 5566899999999999999999977665432 33344443332100 0 00001267999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHH-H--HHhcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLD-L--LKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~--l~~~~vPiIvvlNKiDl~~ 426 (657)
.+..+++.+..+|||++.++.......-.|. - .....||.|+|-||||++.
T Consensus 85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH
Confidence 9888999999999999998844333222222 1 2234699999999999984
No 322
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.55 E-value=3.5e-07 Score=78.30 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=65.0
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEec
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQ 580 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~ 580 (657)
|+++|.++|.++|.|+++.|+|.+|+|++||.|. +|.. ....|++|++++..+..|. .+.|++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~------------~~~~V~sI~~~~~~~~~a~aGd~v~i~l~ 68 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG------------EETRVRSIQVHGKDVEEAKAGDRVALNLT 68 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC------------ceEEEEEEEECCcCcCEEcCCCEEEEEEc
Confidence 5789999999999999999999999999999999 6642 3588999999999988663 4889999
Q ss_pred CCC--CCCCCCeEE
Q 036359 581 GLQ--DAIAGTSLY 592 (657)
Q Consensus 581 gl~--~~~aG~~l~ 592 (657)
+++ ++..|+.|+
T Consensus 69 ~~~~~~i~~G~vl~ 82 (83)
T cd03696 69 GVDAKDLERGDVLS 82 (83)
T ss_pred CCCHHHcCCccEEc
Confidence 885 578898775
No 323
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.55 E-value=2.8e-07 Score=86.19 Aligned_cols=114 Identities=24% Similarity=0.272 Sum_probs=76.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccc-eeeecccccchhhccccccccCCCcEEEEeCCCCCcc-
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGA-TYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF- 373 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~-~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f- 373 (657)
+...|+|||.-++|||.||..|+..+...+..- ..++.. +....+.-++. ...+.|.||.|...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~--~pTiEDiY~~svet~rga-----------rE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL--HPTIEDIYVASVETDRGA-----------REQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcc--ccchhhheeEeeecCCCh-----------hheEEEeecccccCch
Confidence 445689999999999999999997765433211 111211 12222221110 123889999999888
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHh--------cCCceEEEecccccc
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKE--------RSVDFIIALSKADKL 425 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~--------~~vPiIvvlNKiDl~ 425 (657)
..+-..+++.+|+.|||++.++ +.++..+.+++. -.+||||..||+|+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hhhhHhHhccCceEEEEecCCC---HHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 4555567899999999999998 444444444332 248999999999994
No 324
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=3.6e-07 Score=96.31 Aligned_cols=131 Identities=22% Similarity=0.284 Sum_probs=82.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCc-eeeeccceeeecc----cccchhhccc--c--------------
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGG-ITQQIGATYFPVE----NIQKRTEKLN--A-------------- 353 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~G-iT~~ig~~~~~~~----~~~~~~~~~~--~-------------- 353 (657)
.-.|.|+++|+-..||||+|+.|+...+..-+.|- -|.+. +..+-+. .+.+.+..+. +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~-Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR-FIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce-eEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 45688999999999999999999987765222110 00000 0000000 0000000000 0
Q ss_pred ---ccccC---CCcEEEEeCCCCC-----------cchhhhhcCCCCCceeeEeecccC-CCchhHHHHHHHHHhcCCce
Q 036359 354 ---DAKLK---VPGLLVVDTPGHE-----------SFTNLRSWGPGLCDIAILVVDIMD-GIKPQTIESLDLLKERSVDF 415 (657)
Q Consensus 354 ---~~~~~---~~~l~iIDTPGh~-----------~f~~~~~~g~~~aD~aIlVVDa~~-g~~~qt~e~l~~l~~~~vPi 415 (657)
...++ ...++||||||.- +|.....-.+..||.+||++|+.. .+.+.+.+.|..++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 00011 1249999999953 344444444577999999999976 67888999999999888889
Q ss_pred EEEeccccccc
Q 036359 416 IIALSKADKLY 426 (657)
Q Consensus 416 IvvlNKiDl~~ 426 (657)
-||+||.|.+.
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 99999999874
No 325
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.53 E-value=2e-07 Score=93.21 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=59.7
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCce--EEEecccccccCcccCCCccH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDF--IIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPi--IvvlNKiDl~~~w~~~~~~~~ 436 (657)
...++||+|.|.. ..... ....+|.+|+|||+.++...+.. ...++.+ ++++||+|+... ...+
T Consensus 91 ~~D~iiIEt~G~~-l~~~~--~~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~~~----~~~~- 156 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATF--SPELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLAPM----VGAD- 156 (199)
T ss_pred CCCEEEEECCCCC-ccccc--chhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhcccc----cccc-
Confidence 4568999999932 11111 12336889999999886542211 1123444 899999999630 0111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 437 KKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 437 ~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
+..+...+... + ...+++++||++|.++.+.+.+.
T Consensus 157 ------------------~~~~~~~~~~~--~-----------~~~~i~~~Sa~~g~gi~el~~~i 191 (199)
T TIGR00101 157 ------------------LGVMERDAKKM--R-----------GEKPFIFTNLKTKEGLDTVIDWI 191 (199)
T ss_pred ------------------HHHHHHHHHHh--C-----------CCCCEEEEECCCCCCHHHHHHHH
Confidence 12233333332 1 24789999999999998877654
No 326
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.51 E-value=6.6e-07 Score=76.53 Aligned_cols=75 Identities=20% Similarity=0.401 Sum_probs=63.1
Q ss_pred ccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEe
Q 036359 504 EVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITA 579 (657)
Q Consensus 504 ~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~ 579 (657)
||+++|.++|.. .|++++|+|.+|+|++||.|. +|.. ....|++|++|+..+..|. .+.+.+
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~------------~~~~V~si~~~~~~~~~a~aGd~v~l~l 66 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNK------------TQVEVLSIYNEDVEVRYARPGENVRLRL 66 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCC------------cEEEEEEEEECCEECCEECCCCEEEEEe
Confidence 578999999976 389999999999999999999 6653 3588999999999988774 488889
Q ss_pred cCCCC--CCCCCeEE
Q 036359 580 QGLQD--AIAGTSLY 592 (657)
Q Consensus 580 ~gl~~--~~aG~~l~ 592 (657)
.|++. +.+|+.|+
T Consensus 67 ~~i~~~~v~~G~vl~ 81 (82)
T cd04089 67 KGIEEEDISPGFVLC 81 (82)
T ss_pred cCCCHHHCCCCCEEe
Confidence 88864 68888875
No 327
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.49 E-value=8.4e-08 Score=98.11 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=57.6
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
.+.+.||.|-|...--. .....+|++|||+-...|-.-|.... -.+.+.=|||+||+|+. ++.
T Consensus 121 G~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~Ka----GimEiaDi~vVNKaD~~-------gA~--- 183 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKA----GIMEIADIFVVNKADRP-------GAD--- 183 (266)
T ss_dssp T-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-T----THHHH-SEEEEE--SHH-------HHH---
T ss_pred CCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhh----hhhhhccEEEEeCCChH-------HHH---
Confidence 46699999998653221 13477999999998877766555331 11124668999999974 221
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
.....+...|....-. .-+...|++.+||.++.++.++..
T Consensus 184 --------------~~~~~l~~~l~l~~~~--------~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 184 --------------RTVRDLRSMLHLLRER--------EDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp --------------HHHHHHHHHHHHCSTS--------CTSB--EEEEEBTTTTBSHHHHHH
T ss_pred --------------HHHHHHHHHHhhcccc--------ccCCCCCEEEEEeCCCCCHHHHHH
Confidence 1112233333211100 112357999999999988877654
No 328
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.47 E-value=9.6e-08 Score=99.84 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=60.8
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchh-hccccccccCCCcEEEEeCCCCCc------
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRT-EKLNADAKLKVPGLLVVDTPGHES------ 372 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~l~iIDTPGh~~------ 372 (657)
|+|+|.+|+|||||+|+|++.++..+..++.|.......+.+...+-.. ..+..+.......|.|+||||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999998776666777755444344433221000 011111111122489999999642
Q ss_pred -chhhhhcCCCCCceeeEeecccC
Q 036359 373 -FTNLRSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 373 -f~~~~~~g~~~aD~aIlVVDa~~ 395 (657)
+.+.....+..+|++|+|||+..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 12223344578999999999853
No 329
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.46 E-value=1.1e-06 Score=75.13 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=64.5
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEec
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQ 580 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~ 580 (657)
|+++|.++|...+.|++++|+|.+|.|++||+|. .|.. ....|++|++|+.++..|. .+.|.+.
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~------------~~~~V~si~~~~~~~~~a~aGd~v~l~l~ 68 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG------------KTSRVKSIETFDGELDEAGAGESVTLTLE 68 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC------------CeEEEEEEEECCcEeCEEcCCCEEEEEEC
Confidence 5789999999888888999999999999999999 5532 4588999999999998774 3888888
Q ss_pred CCCCCCCCCeEE
Q 036359 581 GLQDAIAGTSLY 592 (657)
Q Consensus 581 gl~~~~aG~~l~ 592 (657)
+-+.+.+|+.|+
T Consensus 69 ~~~~i~~G~vl~ 80 (81)
T cd03695 69 DEIDVSRGDVIV 80 (81)
T ss_pred CccccCCCCEEe
Confidence 766788999875
No 330
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.46 E-value=2.3e-07 Score=100.22 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=61.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccch-hhccccccccCCCcEEEEeCCCCCc----
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKR-TEKLNADAKLKVPGLLVVDTPGHES---- 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~-~~~~~~~~~~~~~~l~iIDTPGh~~---- 372 (657)
+.|+|+|.+|+|||||+|+|++........++.|.+.....+.+...+-. ...+..+.......+.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 46999999999999999999998866666677775544333333321100 0001111111123589999999643
Q ss_pred ---chhhhhcCCCCCceeeEeeccc
Q 036359 373 ---FTNLRSWGPGLCDIAILVVDIM 394 (657)
Q Consensus 373 ---f~~~~~~g~~~aD~aIlVVDa~ 394 (657)
..+.....+..||++|+|||+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1223344568899999999985
No 331
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=1.5e-06 Score=93.05 Aligned_cols=117 Identities=26% Similarity=0.385 Sum_probs=75.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccccccc-Cc----e--eeeccceeeecccccchhhccccccccCCCcEEEEeCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEA-GG----I--TQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG 369 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~-~G----i--T~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG 369 (657)
...+.++|.+|.|||||+|.|+.+.+..... .+ + |..+..+...+. ..+..++ |++|||||
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie---------e~g~~l~---LtvidtPG 88 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE---------ENGVKLN---LTVIDTPG 88 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec---------CCCeEEe---eEEeccCC
Confidence 3679999999999999999999876543210 00 0 111111111111 1123333 89999999
Q ss_pred CCcchhhh------------------------hc-CC--CCCceeeEeeccc-CCCchhHHHHHHHHHhcCCceEEEecc
Q 036359 370 HESFTNLR------------------------SW-GP--GLCDIAILVVDIM-DGIKPQTIESLDLLKERSVDFIIALSK 421 (657)
Q Consensus 370 h~~f~~~~------------------------~~-g~--~~aD~aIlVVDa~-~g~~~qt~e~l~~l~~~~vPiIvvlNK 421 (657)
+.++.... .| .. ...+||+|.|..+ +|+.+..++.+..+.. .+.+|-|+-|
T Consensus 89 fGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~K 167 (366)
T KOG2655|consen 89 FGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAK 167 (366)
T ss_pred CcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeec
Confidence 87653210 01 11 2467899999864 6899999888776654 5889999999
Q ss_pred ccccc
Q 036359 422 ADKLY 426 (657)
Q Consensus 422 iDl~~ 426 (657)
.|.+.
T Consensus 168 aD~lT 172 (366)
T KOG2655|consen 168 ADTLT 172 (366)
T ss_pred cccCC
Confidence 99874
No 332
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.45 E-value=5.6e-08 Score=106.37 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=48.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc-ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN-VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
.+|+++|++|+||||+||+|.|.+ +....++|.|.||...+++. .+.++||||..
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~-------------------~v~LCDCPGLV 370 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP-------------------SVCLCDCPGLV 370 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC-------------------CceecCCCCcc
Confidence 569999999999999999999987 67788999999998887764 38999999976
No 333
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.43 E-value=2.9e-07 Score=96.43 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=57.4
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHH
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
..++||++-|.-...... -+ ..+.-|.|+++..|.. .. +.+-..+..+-|+++||+|+.. ...
T Consensus 185 ~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~d-kp---lKyp~~f~~ADIVVLNKiDLl~------~~~---- 247 (290)
T PRK10463 185 NGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGED-KP---LKYPHMFAAASLMLLNKVDLLP------YLN---- 247 (290)
T ss_pred CcEEEEECCCCccCCCcc--ch-hhceeEEEEECccccc-cc---hhccchhhcCcEEEEEhHHcCc------ccH----
Confidence 358899998852111110 01 1123356677776642 11 1222334567899999999963 111
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcccc
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFRN 503 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~~ 503 (657)
..+..++..+.... ...+||++||++|.++...+.+..
T Consensus 248 -------------~dle~~~~~lr~ln-------------p~a~I~~vSA~tGeGld~L~~~L~ 285 (290)
T PRK10463 248 -------------FDVEKCIACAREVN-------------PEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred -------------HHHHHHHHHHHhhC-------------CCCcEEEEECCCCCCHHHHHHHHH
Confidence 11233444443321 347899999999999988776643
No 334
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=5.9e-07 Score=87.01 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=79.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..++++|..+.||||++.+.+...+.... ...+|....+.... .+.+...|..|||.|++.|..++
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe~~y----~at~Gv~~~pl~f~----------tn~g~irf~~wdtagqEk~gglr 76 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKTY----PATLGVEVHPLLFD----------TNRGQIRFNVWDTAGQEKKGGLR 76 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccceecc----cCcceeEEeeeeee----------cccCcEEEEeeecccceeecccc
Confidence 34899999999999999999987765321 11233332222110 01112348999999999999888
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHHH--HHH-hcCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESLD--LLK-ERSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l~--~l~-~~~vPiIvvlNKiDl~ 425 (657)
.-++-...|+|+++|....+.-+....|. +++ ..|+|||+|.||.|.-
T Consensus 77 dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 77 DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred cccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 87777788999999998866555554443 222 3368999999999974
No 335
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.36 E-value=9.3e-07 Score=91.71 Aligned_cols=169 Identities=20% Similarity=0.188 Sum_probs=90.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccc-------------cCc-----------eeeeccceeeecccccchhhc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGE-------------AGG-----------ITQQIGATYFPVENIQKRTEK 350 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~-------------~~G-----------iT~~ig~~~~~~~~~~~~~~~ 350 (657)
-+.++|+|.|.+|+|||||++.|...-...+. .+| ++.+.+.+..+... ++....
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s-rG~lGG 127 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS-RGTLGG 127 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC-Cccchh
Confidence 46778999999999999999999632211110 111 12222222222211 111111
Q ss_pred ccc-------ccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccc
Q 036359 351 LNA-------DAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKAD 423 (657)
Q Consensus 351 ~~~-------~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiD 423 (657)
+.. -..--.|.+.||.|-|...-- ......+|++|+|.-..-|-.-|.+.. -.+.+-=|||+||.|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD 200 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKAD 200 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccC
Confidence 100 011124568999999864321 123467999999987666655555432 112234589999999
Q ss_pred cccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 424 l~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
+. ++.. .. ..+...|... .. +|. ..+...+++-+||.+++++.+++..
T Consensus 201 ~~-------~A~~----------a~-------r~l~~al~~~---~~-~~~--~~~W~ppv~~t~A~~g~Gi~~L~~a 248 (323)
T COG1703 201 RK-------GAEK----------AA-------RELRSALDLL---RE-VWR--ENGWRPPVVTTSALEGEGIDELWDA 248 (323)
T ss_pred hh-------hHHH----------HH-------HHHHHHHHhh---cc-ccc--ccCCCCceeEeeeccCCCHHHHHHH
Confidence 74 2211 11 1122222211 00 111 1245679999999999998887654
No 336
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.35 E-value=2.5e-06 Score=97.08 Aligned_cols=112 Identities=20% Similarity=0.133 Sum_probs=66.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccc-cc-cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch-
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQE-GE-AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT- 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~-~~-~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~- 374 (657)
..|+|+|.+|+|||||+|.|++..+.. .. ..++|. +......+ ....|.||||||..+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~i----------------dG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLV----------------QGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEE----------------CCceEEEEECCCCCcccc
Confidence 469999999999999999999976432 21 123332 21111111 12358999999987542
Q ss_pred -----hh----hhcCC--CCCceeeEeecccCC-CchhHHHHHHHHH-hcCC----ceEEEeccccccc
Q 036359 375 -----NL----RSWGP--GLCDIAILVVDIMDG-IKPQTIESLDLLK-ERSV----DFIIALSKADKLY 426 (657)
Q Consensus 375 -----~~----~~~g~--~~aD~aIlVVDa~~g-~~~qt~e~l~~l~-~~~v----PiIvvlNKiDl~~ 426 (657)
.. ....+ ..+|++|||+..+.. ........+..+. .+|- -+|||+|..|.+.
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 01 11122 247888888766532 2123333444332 2342 3899999999874
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.34 E-value=5.5e-07 Score=86.17 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=40.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
...|+|+|.+|+|||||+|+|++... ..+..+|.|.+.... ... .++.||||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~--~~~-----------------~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI--TLM-----------------KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE--EcC-----------------CCEEEEECcCC
Confidence 34588999999999999999998663 456667777654322 211 23889999994
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.31 E-value=6.9e-07 Score=87.27 Aligned_cols=55 Identities=20% Similarity=0.451 Sum_probs=42.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
...|+|+|.+|+|||||+|+|++... ..+..+|+|.+.....+. .++.|+||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-------------------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-------------------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-------------------CCEEEEECcCC
Confidence 45699999999999999999998664 566778888765443321 13899999994
No 339
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=3.6e-06 Score=84.37 Aligned_cols=118 Identities=25% Similarity=0.321 Sum_probs=72.5
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccc-----cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGE-----AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~-----~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
..|.|+|.+|.|||||+|.|+.+.+.... +--+++++....+... +. ..+..+ .+++|||||+.+
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thv-ie------E~gVkl---kltviDTPGfGD 116 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHV-IE------EKGVKL---KLTVIDTPGFGD 116 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeee-ee------ecceEE---EEEEecCCCccc
Confidence 34999999999999999999977654321 1112221111111110 00 011122 389999999877
Q ss_pred chhh--------------------------hhcCC--CCCceeeEeeccc-CCCchhHHHHHHHHHhcCCceEEEecccc
Q 036359 373 FTNL--------------------------RSWGP--GLCDIAILVVDIM-DGIKPQTIESLDLLKERSVDFIIALSKAD 423 (657)
Q Consensus 373 f~~~--------------------------~~~g~--~~aD~aIlVVDa~-~g~~~qt~e~l~~l~~~~vPiIvvlNKiD 423 (657)
+.++ +.+.+ ....||+|.|..+ +.+.|-.++.|..|... +.+|-|+-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecc
Confidence 6532 11112 2256888888765 46678888888766553 56888999999
Q ss_pred ccc
Q 036359 424 KLY 426 (657)
Q Consensus 424 l~~ 426 (657)
.+.
T Consensus 196 tlT 198 (336)
T KOG1547|consen 196 TLT 198 (336)
T ss_pred ccc
Confidence 864
No 340
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.16 E-value=8.7e-07 Score=85.29 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+++.+++++|++|+|||||||.|++..
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456779999999999999999999863
No 341
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.16 E-value=2.3e-06 Score=81.68 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=41.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc-ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN-VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
+.+.|+|+|++|+|||||+|+|++.. ...+..+|+|.+.....+. ..+.||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-------------------CCEEEEECCCC
Confidence 45669999999999999999999876 3445556777665433221 24899999994
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.15 E-value=2.3e-06 Score=80.50 Aligned_cols=54 Identities=20% Similarity=0.444 Sum_probs=37.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
.|+|+|.+|+|||||+|+|++... ......|.|.+.....+ + ..+.||||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T-----------------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C-----------------CCEEEEECCCcC
Confidence 599999999999999999998764 23334555554322111 1 148999999974
No 343
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.13 E-value=4.5e-06 Score=80.31 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
|+++|+|..|+|||||+++++..
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999998864
No 344
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.2e-05 Score=86.18 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=66.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeee--ccceeeecccccchhhccccccccCCCcEEEEeCCCCCc---
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQ--IGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES--- 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~--ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~--- 372 (657)
+.|+|+|-+|+|||||+|+|+...+.....+..|+. .|..+++.......+....++..+-...+.|+|.+|...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 569999999999999999999988666666776665 444555442222111111222223334589999999532
Q ss_pred ----chhhhhcCCCCCceeeEeecccC
Q 036359 373 ----FTNLRSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 373 ----f~~~~~~g~~~aD~aIlVVDa~~ 395 (657)
..|-....++.+|.++.|||+..
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 34555566788999999999974
No 345
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.07 E-value=3e-06 Score=83.57 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=37.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc---------cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV---------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTP 368 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v---------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTP 368 (657)
..|+|+|.+|+|||||+|+|++... ..+..+|+|.+.....+. ..+.|||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------------~~~~~~DtP 188 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-------------------NGKKLYDTP 188 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-------------------CCCEEEeCc
Confidence 4599999999999999999997543 223344555544322221 137899999
Q ss_pred CC
Q 036359 369 GH 370 (657)
Q Consensus 369 Gh 370 (657)
|.
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 94
No 346
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.04 E-value=4.6e-05 Score=79.55 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=48.5
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeC-CCCCcchhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDT-PGHESFTNL 376 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDT-PGh~~f~~~ 376 (657)
..|+|+|..++||||||.+|-+..-. ...+| +++.++...+...- .+...++-++|- ++|..+...
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~-Kkgsg----LeY~yl~V~de~RD--------d~tr~~VWiLDGd~~h~~LLk~ 119 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETV-KKGSG----LEYLYLHVHDEDRD--------DLTRCNVWILDGDLYHKGLLKF 119 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccccc-CCCCC----cceEEEecccccch--------hhhhcceEEecCchhhhhHHhh
Confidence 34999999999999999999886521 11122 44445444321100 011122555653 355554444
Q ss_pred hhcCCCCCc-eeeEeecccCC
Q 036359 377 RSWGPGLCD-IAILVVDIMDG 396 (657)
Q Consensus 377 ~~~g~~~aD-~aIlVVDa~~g 396 (657)
.....+.++ ++||++|.+.+
T Consensus 120 al~ats~aetlviltasms~P 140 (473)
T KOG3905|consen 120 ALPATSLAETLVILTASMSNP 140 (473)
T ss_pred cccccCccceEEEEEEecCCc
Confidence 444444444 57788888775
No 347
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.04 E-value=6.7e-06 Score=82.17 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=71.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
.|++||.+|+||||+=..+...... +....|-|+++...++.+- .+-.+.+|||.|++.|..+.
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl---------------Gnl~LnlwDcGgqe~fmen~ 70 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL---------------GNLVLNLWDCGGQEEFMENY 70 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh---------------hhheeehhccCCcHHHHHHH
Confidence 3899999999999987777644322 1222333444433333221 11237899999999876443
Q ss_pred -----hcCCCCCceeeEeecccCCCchhHHHHH----HHHHhc--CCceEEEeccccccc
Q 036359 378 -----SWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 378 -----~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
...++..+.+|+|+|+...-..-.+.+. ..+... ...+++.++|+|++.
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 3356889999999999875443333333 333322 223889999999975
No 348
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.03 E-value=5.2e-06 Score=81.93 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=41.5
Q ss_pred cEEEEeCCCCCcc-h-----hhhhcCC---CCCceeeEeecccCCC-----chhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 361 GLLVVDTPGHESF-T-----NLRSWGP---GLCDIAILVVDIMDGI-----KPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 361 ~l~iIDTPGh~~f-~-----~~~~~g~---~~aD~aIlVVDa~~g~-----~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.++|+||||+... + ....+.+ ..--|+|+++|+.--+ -.-.+.+|..+..+.+|.|=|++|||++.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 4899999996542 2 1122222 2233678888865422 12233445556677899999999999985
No 349
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.03 E-value=5.5e-06 Score=87.50 Aligned_cols=57 Identities=28% Similarity=0.480 Sum_probs=43.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
+...|+|+|.+|+|||||+|+|++... ..+..+|+|.++.... .. .++.||||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~~-----------------~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK--LG-----------------KGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE--eC-----------------CcEEEEECCCcC
Confidence 345699999999999999999998774 5566788887764322 21 248899999974
No 350
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.03 E-value=9.5e-06 Score=79.68 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=57.6
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCc-eeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCD-IAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD-~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
.++||...| ...... .....| .-|+|||...|..---.-+ --... -=++|+||+|+.+ .-++++
T Consensus 98 Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~g---P~i~~-aDllVInK~DLa~----~v~~dl--- 162 (202)
T COG0378 98 DLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGG---PGIFK-ADLLVINKTDLAP----YVGADL--- 162 (202)
T ss_pred CEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCC---CceeE-eeEEEEehHHhHH----HhCccH---
Confidence 588999888 222211 224456 8899999998763211000 00000 2478999999974 112221
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcccc
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFRN 503 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~~ 503 (657)
..+...... +....+||.+|++||+++.+.+.+..
T Consensus 163 ----------------evm~~da~~-------------~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 163 ----------------EVMARDAKE-------------VNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred ----------------HHHHHHHHH-------------hCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 111111111 23568999999999999998776644
No 351
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=7.9e-06 Score=88.91 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=65.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-ccc--cCceeeec---cce----------eeecccccchhhcc-ccccccC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EGE--AGGITQQI---GAT----------YFPVENIQKRTEKL-NADAKLK 358 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~--~~GiT~~i---g~~----------~~~~~~~~~~~~~~-~~~~~~~ 358 (657)
+..+|+|+|++|+||||++..|...... .+. ..-+|.+. +.. .+++...... ..+ ..-..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~-~~l~~~l~~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG-GDLQLALAELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCc-ccHHHHHHHhc
Confidence 3456999999999999999999764321 111 01111110 000 0000000000 000 0001234
Q ss_pred CCcEEEEeCCCCCcchhh---hh---cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-------eEEEecccccc
Q 036359 359 VPGLLVVDTPGHESFTNL---RS---WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-------FIIALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~---~~---~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-------iIvvlNKiDl~ 425 (657)
.+.++||||||...+... .. .+...++-.+||++++.+....+.-...+....++| -=++++|+|-.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 567999999997643221 11 233345567999999886544332222222222332 24677999976
Q ss_pred c
Q 036359 426 Y 426 (657)
Q Consensus 426 ~ 426 (657)
.
T Consensus 295 ~ 295 (374)
T PRK14722 295 S 295 (374)
T ss_pred C
Confidence 4
No 352
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.00 E-value=1.2e-05 Score=86.10 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=51.3
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-----------CchhHHHHHHHHHh----cCCceEEEecccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-----------IKPQTIESLDLLKE----RSVDFIIALSKAD 423 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-----------~~~qt~e~l~~l~~----~~vPiIvvlNKiD 423 (657)
...+.+||++|+..+...|..++..++++|+|||.++- ....++..+..+.. .++|+|+++||+|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 34588999999999999999999999999999999862 12233333332222 3789999999999
Q ss_pred ccc
Q 036359 424 KLY 426 (657)
Q Consensus 424 l~~ 426 (657)
+..
T Consensus 240 ~f~ 242 (317)
T cd00066 240 LFE 242 (317)
T ss_pred HHH
Confidence 753
No 353
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.00 E-value=8.5e-06 Score=82.98 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=52.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCC--ccccccc-CceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT--NVQEGEA-GGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~--~v~~~~~-~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+|+|+|+.++|||||+|.|++. .+..+.. ...|..+-.+..++.. .....++||||||..+..
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCccc
Confidence 35899999999999999999998 5543322 2233333333333211 012349999999975432
Q ss_pred h------hhhcCCC--CCceeeEeecccC
Q 036359 375 N------LRSWGPG--LCDIAILVVDIMD 395 (657)
Q Consensus 375 ~------~~~~g~~--~aD~aIlVVDa~~ 395 (657)
. +....+. .+|++||.++.+.
T Consensus 75 ~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 75 RGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 1 1222333 4888888888654
No 354
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.98 E-value=8.8e-06 Score=89.91 Aligned_cols=66 Identities=18% Similarity=0.058 Sum_probs=40.8
Q ss_pred CCcEEEEeCCCCCcchhh----hh--cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 359 VPGLLVVDTPGHESFTNL----RS--WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~----~~--~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+.++||||||....... +. .....+|.++||+|++.|-.. ......+...--+--+++||+|-..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCCC
Confidence 467999999996544211 11 123457889999999875332 2223333332234678899999753
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.97 E-value=7.8e-06 Score=85.84 Aligned_cols=56 Identities=29% Similarity=0.469 Sum_probs=41.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc-ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN-VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
+...|+|+|.+|+|||||+|+|++.. ...+..+|+|.......+ . .++.||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S-----------------DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C-----------------CCEEEEECCCc
Confidence 34569999999999999999999876 345566777766542222 1 13899999997
No 356
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.95 E-value=1.6e-05 Score=75.79 Aligned_cols=51 Identities=22% Similarity=0.159 Sum_probs=40.1
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.+..+.+..+|++|+|+|++++...+....+..+...+.|+|+|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 444555667999999999998776666555555666789999999999985
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.94 E-value=1.2e-05 Score=78.23 Aligned_cols=56 Identities=32% Similarity=0.605 Sum_probs=39.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
+.+.|+++|.+++|||||+|+|++..+ ..+...|.|.+.....+. ..+.||||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-------------------CCEEEEECCCC
Confidence 345699999999999999999998765 333345566544332221 24899999996
No 358
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.93 E-value=8.7e-06 Score=87.36 Aligned_cols=56 Identities=25% Similarity=0.410 Sum_probs=43.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
...++|+|.+|+|||||||+|++... ..+..+|+|.++....+. .++.|+||||..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-------------------~~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-------------------DGIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-------------------CCeEEecCCCcC
Confidence 35599999999999999999998874 567778888766543332 238999999964
No 359
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.91 E-value=1e-05 Score=84.81 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.9
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.+...+.+++|++|+|||||+|+|....
T Consensus 161 ~l~~~~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 161 LLAGKITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred HhcCCeEEEECCCCCcHHHHHHhhCchh
Confidence 3566679999999999999999999743
No 360
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.89 E-value=1.1e-05 Score=83.34 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=41.3
Q ss_pred CcchhhhhcCCCCCceeeEeecccCCC-chhHHH-HHHHHHhcCCceEEEecccccc
Q 036359 371 ESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIE-SLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 371 ~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e-~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
+.|..++..++..+|++|+|+|+.++. ...... ++..+...++|+|+|+||+|+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 556666667889999999999998743 333333 3445556789999999999996
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=97.89 E-value=1.1e-05 Score=87.35 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
...+++|+|++|+|||||||+|++..
T Consensus 204 ~~ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 204 TGRISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred hhCCEEEECCCCCCHHHHHHHhcccc
Confidence 34468999999999999999999764
No 362
>PRK12289 GTPase RsgA; Reviewed
Probab=97.89 E-value=1.1e-05 Score=87.40 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
...+++|+|++|+|||||||+|++..
T Consensus 171 ~~ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 171 RNKITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred ccceEEEEeCCCCCHHHHHHHHcCcc
Confidence 44568999999999999999999754
No 363
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.88 E-value=1.8e-05 Score=85.81 Aligned_cols=98 Identities=16% Similarity=0.030 Sum_probs=62.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchh-hccccccccCCCcEEEEeCCCCCc---
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRT-EKLNADAKLKVPGLLVVDTPGHES--- 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~l~iIDTPGh~~--- 372 (657)
..++|+|.+++|||||+++|++... .....+..|.......+.+...+-.. ..+..........+.|+|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 3489999999999999999999887 55555555544433334333322100 011112222333589999999643
Q ss_pred ----chhhhhcCCCCCceeeEeecccC
Q 036359 373 ----FTNLRSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 373 ----f~~~~~~g~~~aD~aIlVVDa~~ 395 (657)
+.+.....++.+|++++||++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 33445556788999999999854
No 364
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.87 E-value=2.7e-06 Score=82.23 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=77.5
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
+.|+|.-++|||+++.+.+..+++......|...+....+.|+... .-.+.+||..|++.|.+|..-
T Consensus 28 ~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t-------------~vRlqLwdIagQerfg~mtrV 94 (229)
T KOG4423|consen 28 VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKT-------------IVRLQLWDIAGQERFGNMTRV 94 (229)
T ss_pred hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHH-------------HHHHHHhcchhhhhhcceEEE
Confidence 8899999999999999998877653222222222333333333211 013789999999999999999
Q ss_pred CCCCCceeeEeecccCCCchhHHHHHHH-H-----HhcC--CceEEEecccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESLDL-L-----KERS--VDFIIALSKADKL 425 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l~~-l-----~~~~--vPiIvvlNKiDl~ 425 (657)
++..+.++.+|+|.+..........|.. + ...| +|+|+..||||.-
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 9999999999999998554333333321 1 1124 4589999999985
No 365
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.86 E-value=2.8e-05 Score=73.10 Aligned_cols=50 Identities=24% Similarity=0.141 Sum_probs=40.3
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc--CCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
..+.+..+|++|+|+|+.++...+.......+... +.|+|+|+||+|+..
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 34567889999999999998777766666666655 899999999999963
No 366
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.86 E-value=7e-06 Score=89.47 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=63.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCcc------cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNV------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
.|.|+|.+|+|||||+|+|++... ..+..+|.|..+. .++.. .++.|+||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~-----------------~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLD-----------------DGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeC-----------------CCCEEEECCCCCC
Confidence 499999999999999999997532 3344566665433 22221 2378999999753
Q ss_pred chhh---hh-------cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 373 FTNL---RS-------WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 373 f~~~---~~-------~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
...+ .. .-.......+++++..+.+.-.-+..+..+...+..+++++++.+.+.
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 3211 10 111234556677776553322222222233334556788888877753
No 367
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.86 E-value=4.1e-05 Score=63.71 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=51.1
Q ss_pred eeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-----cccEEEecCCCC-CCCCCeE
Q 036359 519 GTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-----QGIKITAQGLQD-AIAGTSL 591 (657)
Q Consensus 519 GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-----~gv~i~~~gl~~-~~aG~~l 591 (657)
|+|++++|++|+|+.||.|. .|..+ +......+|+++++++.....+ .|+.+.+.|+++ +.+||+|
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~-------~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl 73 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGT-------GKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTL 73 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTT-------TEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCC-------cceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEE
Confidence 89999999999999999999 55221 1111348899999987755433 378888889999 7999998
Q ss_pred E
Q 036359 592 Y 592 (657)
Q Consensus 592 ~ 592 (657)
+
T Consensus 74 ~ 74 (74)
T PF03144_consen 74 T 74 (74)
T ss_dssp E
T ss_pred C
Confidence 5
No 368
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.83 E-value=2.2e-05 Score=97.63 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=66.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccccccc--Cceeeeccc-eeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEA--GGITQQIGA-TYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~--~GiT~~ig~-~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
..-|..+|||++|+||||||.+. |..+..... ..-+..++. .++.|- -....+||||+|..
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww---------------f~~~avliDtaG~y 172 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW---------------FTDEAVLIDTAGRY 172 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE---------------ecCCEEEEcCCCcc
Confidence 35588999999999999999986 434432210 001111111 111110 01236899999932
Q ss_pred c---------------chhhh--hcCCCCCceeeEeecccCCCc--hhHH-HH-------HHH---HHhcCCceEEEecc
Q 036359 372 S---------------FTNLR--SWGPGLCDIAILVVDIMDGIK--PQTI-ES-------LDL---LKERSVDFIIALSK 421 (657)
Q Consensus 372 ~---------------f~~~~--~~g~~~aD~aIlVVDa~~g~~--~qt~-e~-------l~~---l~~~~vPiIvvlNK 421 (657)
- |..+. .|--...|+||++||+.+=+. ++.+ .+ |.. .....+||.|++||
T Consensus 173 ~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk 252 (1169)
T TIGR03348 173 TTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTK 252 (1169)
T ss_pred ccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 1 11211 223456899999999987332 2111 11 111 12236799999999
Q ss_pred cccccC
Q 036359 422 ADKLYG 427 (657)
Q Consensus 422 iDl~~~ 427 (657)
||++.|
T Consensus 253 ~Dll~G 258 (1169)
T TIGR03348 253 ADLLAG 258 (1169)
T ss_pred chhhcC
Confidence 999864
No 369
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.2e-05 Score=84.87 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=75.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeec-------cc-eeeecc----cccchhhc-----c------
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI-------GA-TYFPVE----NIQKRTEK-----L------ 351 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~i-------g~-~~~~~~----~~~~~~~~-----~------ 351 (657)
-++..|+|.|.+++||||++|+++...+-.+..+-+|-.+ |. .+.-++ .+...+.. +
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4677799999999999999999997664332221111100 00 000000 00000000 0
Q ss_pred ---------c-cc-cccCCCcEEEEeCCCCCc---chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eE
Q 036359 352 ---------N-AD-AKLKVPGLLVVDTPGHES---FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FI 416 (657)
Q Consensus 352 ---------~-~~-~~~~~~~l~iIDTPGh~~---f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iI 416 (657)
+ .+ ..+-...+.+||.||..- +........-.+|++|||+.+..-++....+.+.....- .| |+
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 0 00 011112589999999742 344444555679999999999885555444455444443 66 77
Q ss_pred EEeccccccc
Q 036359 417 IALSKADKLY 426 (657)
Q Consensus 417 vvlNKiDl~~ 426 (657)
|+.||+|...
T Consensus 266 IlnnkwDasa 275 (749)
T KOG0448|consen 266 ILNNKWDASA 275 (749)
T ss_pred EEechhhhhc
Confidence 7888999863
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=97.82 E-value=2.7e-05 Score=83.78 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=38.9
Q ss_pred CCcEEEEeCCCCCcchhhhh------cCCCCCceeeEeecccCCCchhHHHHHHHHH-hcCCceEEEeccccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRS------WGPGLCDIAILVVDIMDGIKPQTIESLDLLK-ERSVDFIIALSKADKLY 426 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~------~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-~~~vPiIvvlNKiDl~~ 426 (657)
.+.++||||||......... .....+|.++||+|+..|- ...+...... ..++ --+++||+|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~-~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGI-DGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCC-CEEEEeeecCCC
Confidence 35699999999764321111 1123578999999997642 2233233222 2233 567789999853
No 371
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.82 E-value=2.7e-05 Score=74.21 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKAD 423 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiD 423 (657)
.+.+.||||||..... ...+..+|.+|+|+...- ......+. ...+..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k-~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIK-AGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhh-hhHhhhcCEEEEeCCC
Confidence 5679999999965322 336678999999987652 12222111 1223334688999998
No 372
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.78 E-value=2.7e-05 Score=77.67 Aligned_cols=66 Identities=20% Similarity=0.136 Sum_probs=38.3
Q ss_pred CCcEEEEeCCCCCcchhh----hhc--CCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 359 VPGLLVVDTPGHESFTNL----RSW--GPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~----~~~--g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+.+.||||||...+... +.. .....+-++||+|++.+... ...........++. =++++|+|-..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~~~-~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED-LEQALAFYEAFGID-GLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH-HHHHHHHHHHSSTC-EEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH-HHHHHHHhhcccCc-eEEEEeecCCC
Confidence 356999999997654321 111 11257789999999875322 11233333444444 44589999864
No 373
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.77 E-value=0.00026 Score=79.48 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..|+|+|..++||||||.+|.+.
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~ 48 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGI 48 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhcc
Confidence 34999999999999999998764
No 374
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.77 E-value=5.5e-05 Score=72.32 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=36.9
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHHHHHh--cCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLDLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
+.+..+|++|+|+|+.++...........+.. .++|+|+|+||+|+..
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 35678999999999998766555555555544 3489999999999963
No 375
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.76 E-value=2.7e-05 Score=80.39 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+...+++|+|++|+|||||||+|++..
T Consensus 118 l~~~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 118 LQNRISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 344579999999999999999999754
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.75 E-value=3.8e-05 Score=80.55 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=41.1
Q ss_pred CCCcEEEEeCCCCCcchhhhh-------c-----CCCCCceeeEeecccCCCchhHHHHHHHHH-hcCCceEEEeccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRS-------W-----GPGLCDIAILVVDIMDGIKPQTIESLDLLK-ERSVDFIIALSKADK 424 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~-------~-----g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-~~~vPiIvvlNKiDl 424 (657)
..+.+.||||||...+..... + ....+|.++||+|++.| ..+......+. ..+ +.-+++||+|-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCC
Confidence 446799999999765422211 1 12358999999999753 33333333222 233 36788999998
Q ss_pred cc
Q 036359 425 LY 426 (657)
Q Consensus 425 ~~ 426 (657)
..
T Consensus 230 ~~ 231 (272)
T TIGR00064 230 TA 231 (272)
T ss_pred CC
Confidence 54
No 377
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.75 E-value=3.8e-05 Score=85.45 Aligned_cols=61 Identities=25% Similarity=0.220 Sum_probs=39.5
Q ss_pred CcEEEEeCCCCCcchhh------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcC--Cc-eEEEecccccc
Q 036359 360 PGLLVVDTPGHESFTNL------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS--VD-FIIALSKADKL 425 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~--vP-iIvvlNKiDl~ 425 (657)
+.++||||||...+... ....+..+|.++||+|++.| ..+ +..+..++ ++ .-+++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~a---v~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQA---KNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHH---HHHHHHHHhcCCCCEEEEecccCC
Confidence 46999999997654321 12234568999999999885 223 33333332 44 35788999964
No 378
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00014 Score=82.85 Aligned_cols=49 Identities=24% Similarity=0.277 Sum_probs=35.5
Q ss_pred ceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeeccccccccc-cc
Q 036359 518 YGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-GI 575 (657)
Q Consensus 518 ~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-gv 575 (657)
...|+.+.|..|+|+.|.-|+-|.. . -+.-.+|.||+++|.+|..|- |-
T Consensus 950 dPiv~GV~V~~GilkiGTPiCv~~r----~-----~~~lG~v~Sie~Nh~~vd~akkGq 999 (1064)
T KOG1144|consen 950 DPIVLGVDVEEGILKIGTPICVPKR----E-----FIDLGRVASIENNHKPVDYAKKGQ 999 (1064)
T ss_pred CCeEEEEEeecCeeecCCceEEecc----c-----eeeeeeeeeecccCcccchhhcCC
Confidence 3456677899999999998883321 1 112357999999999999883 53
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.74 E-value=4.7e-05 Score=81.58 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=39.5
Q ss_pred CCCcEEEEeCCCCCcchhh-------hhc-----CCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNL-------RSW-----GPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~-------~~~-----g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+.++||||||...+... ..+ ....++.++||+|++.|.. ...........--+.-+++||+|..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~~~giIlTKlD~t 272 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVGLTGIILTKLDGT 272 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCCCCEEEEECCCCC
Confidence 4467999999997643221 111 1245788999999997532 2222222221112357889999975
Q ss_pred c
Q 036359 426 Y 426 (657)
Q Consensus 426 ~ 426 (657)
.
T Consensus 273 ~ 273 (318)
T PRK10416 273 A 273 (318)
T ss_pred C
Confidence 3
No 380
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=97.73 E-value=0.00011 Score=63.38 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=58.2
Q ss_pred cccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEE
Q 036359 503 NEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKI 577 (657)
Q Consensus 503 ~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i 577 (657)
.||.+.|+.+..++..|.+++++|++|+|+.||.|..... ...+|..++.. ..++..+ +|-.+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~~------------~~~~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNRE------------EKIKITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCCC------------cEEEeceeEEEeCCCeEECcEECCCCEE
Confidence 4788999999999999999999999999999999972111 11334444332 2344444 58888
Q ss_pred EecCCCCCCCCCeE
Q 036359 578 TAQGLQDAIAGTSL 591 (657)
Q Consensus 578 ~~~gl~~~~aG~~l 591 (657)
++.||+++..|++|
T Consensus 70 ai~gl~~~~~Gdtl 83 (85)
T cd03690 70 ILTGLKGLRVGDVL 83 (85)
T ss_pred EEECCCCCcCcccc
Confidence 99999999999987
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.73 E-value=6.5e-05 Score=72.86 Aligned_cols=65 Identities=22% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCcchhh----hh--cCCCCCceeeEeecccCCCchhHHHHHH-HHHhcCCceEEEeccccccc
Q 036359 359 VPGLLVVDTPGHESFTNL----RS--WGPGLCDIAILVVDIMDGIKPQTIESLD-LLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~----~~--~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+.++||||||...+... .. ......|.++||+|+..+. ...+.+. .....++ .-+++||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 456899999998643211 11 1123489999999986532 3333333 3344453 567889999864
No 382
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.73 E-value=0.00025 Score=60.99 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=63.1
Q ss_pred eeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEecCC
Q 036359 507 CTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQGL 582 (657)
Q Consensus 507 ~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~gl 582 (657)
..|..+|.+++.|+++.++|.+|+|++|+.|. -|... .+.+.+|+|++.|+..+..+. .+.|.+.|+
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~---------~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~ 73 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGE---------VIYEGKISSLKRFKDDVKEVKKGYECGITLENF 73 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCC---------EEEEEEEEEEEEcCcccCEECCCCEEEEEEeCc
Confidence 56888998888899999999999999999988 44321 113468999999999988663 588999999
Q ss_pred CCCCCCCeEE
Q 036359 583 QDAIAGTSLY 592 (657)
Q Consensus 583 ~~~~aG~~l~ 592 (657)
+++.+||.|.
T Consensus 74 ~d~~~Gdvi~ 83 (84)
T cd03692 74 NDIKVGDIIE 83 (84)
T ss_pred ccCCCCCEEE
Confidence 9999999875
No 383
>PRK12289 GTPase RsgA; Reviewed
Probab=97.71 E-value=4e-05 Score=83.12 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCCCCceeeEeecccCCC-ch-hHHHHHHHHHhcCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGI-KP-QTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~-~~-qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+..+|.++||+|+.++. .+ .....|..+...++|+|+|+||+|++.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS 134 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC
Confidence 568899999999998643 33 223455556667999999999999963
No 384
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=97.71 E-value=0.00021 Score=61.10 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=57.3
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEe
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITA 579 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~ 579 (657)
|.+.|+.+..++..|.+..++|++|+|+.||.|..+.. ....+|..++.. ..++..+ +|..+++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~-----------~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i 69 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNT-----------GKKERISRLLQPFADQYQEIPSLSAGNIGVI 69 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCC-----------CCEEEeeEEEEEECCCceECCeeCCCCEEEE
Confidence 35789999999999999999999999999999971111 123445555432 3445555 5877888
Q ss_pred cCCCCCCCCCeEE
Q 036359 580 QGLQDAIAGTSLY 592 (657)
Q Consensus 580 ~gl~~~~aG~~l~ 592 (657)
.|++++..|++|+
T Consensus 70 ~gl~~~~~Gdtl~ 82 (83)
T cd04092 70 TGLKQTRTGDTLV 82 (83)
T ss_pred ECCCCcccCCEEe
Confidence 9999999999986
No 385
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=5.1e-05 Score=82.60 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=38.4
Q ss_pred CcEEEEeCCCCCcchhh----hhc--CCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 360 PGLLVVDTPGHESFTNL----RSW--GPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~----~~~--g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+.++||||||....... ... .....+.++||+|++.+. ....+.+..+...++ -=++++|+|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCCC
Confidence 57999999997543221 111 123467889999986422 122344444444333 346679999864
No 386
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.66 E-value=5.8e-05 Score=71.86 Aligned_cols=55 Identities=18% Similarity=0.404 Sum_probs=36.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
...|+++|.+++|||||+++|.+.... .+...|.|.++.. +... ..+.||||||.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~~~~-----------------~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--VKIT-----------------SKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--EEcC-----------------CCEEEEECcCC
Confidence 345899999999999999999975432 2333444433221 1111 24899999994
No 387
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.65 E-value=6.3e-05 Score=79.26 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=68.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchh-hccccccccCCCcEEEEeCCCCCc--
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRT-EKLNADAKLKVPGLLVVDTPGHES-- 372 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~l~iIDTPGh~~-- 372 (657)
.|+.++|+|-+++|||||+|+|+......+..+..|++..-..+.....|-.. ..+......-.-.++|+|+.|...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 46679999999999999999999998877777777777665555544333211 111111111112489999998532
Q ss_pred -----chhhhhcCCCCCceeeEeecccC
Q 036359 373 -----FTNLRSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 373 -----f~~~~~~g~~~aD~aIlVVDa~~ 395 (657)
..+.....++.+|.++.||++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 34556667788999999998864
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=6.4e-05 Score=84.66 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=37.0
Q ss_pred CCCcEEEEeCCCCCcchhhh------hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLR------SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~------~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+.++||||||...+.... .... .....+|||+++.+.. +..+.+..+... .+.-+++||+|..
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~-Dl~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFS-DLDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChh-HHHHHHHHHHhh-CCeEEEEecCcCc
Confidence 45679999999975432111 1111 1234677888765322 122333333333 3577899999985
No 389
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=8.2e-05 Score=81.84 Aligned_cols=125 Identities=19% Similarity=0.234 Sum_probs=62.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc-ccccccC-ceeee---c-------------cceeeecccccchhhcccccccc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN-VQEGEAG-GITQQ---I-------------GATYFPVENIQKRTEKLNADAKL 357 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~-GiT~~---i-------------g~~~~~~~~~~~~~~~~~~~~~~ 357 (657)
+..+|+|+|++|+||||++..|.... ...+..- -++.+ + +...+...... .+.....-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~----~l~~~l~~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIK----KFKETLAR 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHH----HHHHHHHh
Confidence 45579999999999999999997532 1111100 00000 0 00000000000 00000011
Q ss_pred CCCcEEEEeCCCCCcchh----hhh---cCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 358 KVPGLLVVDTPGHESFTN----LRS---WGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~----~~~---~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+.++||||||+..... .+. ... ....-.+||+|++.+.. +..+.+......++ -=++++|+|-..
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~-~glIlTKLDEt~ 373 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNY-RRILLTKLDEAD 373 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCC-CEEEEEcccCCC
Confidence 345799999999754321 111 111 22446889999987532 22333333333333 356679999764
No 390
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.63 E-value=0.00013 Score=69.68 Aligned_cols=42 Identities=29% Similarity=0.407 Sum_probs=32.5
Q ss_pred ceeeEeecccCCCchhHHHHH-HHHHhcCCceEEEeccccccc
Q 036359 385 DIAILVVDIMDGIKPQTIESL-DLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 385 D~aIlVVDa~~g~~~qt~e~l-~~l~~~~vPiIvvlNKiDl~~ 426 (657)
|++|+|+|+.++......... ..+...++|+|+|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC
Confidence 789999999886655444333 356677899999999999963
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.63 E-value=5.3e-05 Score=80.04 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNV 322 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v 322 (657)
+.+.+++++|++|+|||||+|.|++...
T Consensus 159 L~~k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 159 LKGKTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred hccceEEEECCCCCCHHHHHHHHhchhh
Confidence 4556799999999999999999998653
No 392
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.62 E-value=7.8e-05 Score=72.40 Aligned_cols=57 Identities=26% Similarity=0.170 Sum_probs=41.9
Q ss_pred CCCCCc-chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 367 TPGHES-FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 367 TPGh~~-f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
-|||.. ..+.....+..+|++|+|+|++.+........+..+ .+.|+|+|+||+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 478753 345556678899999999999887655444443333 368999999999996
No 393
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.61 E-value=3.2e-05 Score=75.80 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=62.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccc-cCceeeeccc-------------eeeecccccchhh-------ccccccc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGE-AGGITQQIGA-------------TYFPVENIQKRTE-------KLNADAK 356 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~-~~GiT~~ig~-------------~~~~~~~~~~~~~-------~~~~~~~ 356 (657)
|+++|.|.-||||||||++|+. ....+. ..-|..++|. .........-.|. .+..-..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~ 79 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLR 79 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHH
Confidence 7899999999999999999994 111111 1111111221 1111111100000 0000011
Q ss_pred cC--CCcEEEEeCCCCCcchhhhh-----cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 357 LK--VPGLLVVDTPGHESFTNLRS-----WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 357 ~~--~~~l~iIDTPGh~~f~~~~~-----~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.. .+.+.||-|.|..+...+.. ...-..+.+|.|||+..-........+ +......-=+|++||+|+++
T Consensus 80 ~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~-~~~Qi~~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 80 EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL-LREQIAFADVIVLNKIDLVS 155 (178)
T ss_dssp CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH-HHHHHCT-SEEEEE-GGGHH
T ss_pred hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh-hhhcchhcCEEEEeccccCC
Confidence 12 45799999999766554411 112335789999999652111111111 12222334588999999974
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00011 Score=79.83 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|+|+.|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 395
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.56 E-value=0.00012 Score=72.23 Aligned_cols=57 Identities=26% Similarity=0.142 Sum_probs=40.9
Q ss_pred CCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 368 PGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 368 PGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
|.+..|..++..++..+|++|+|||+.+...... ..+ .....+.|+|+|+||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~-~~l-~~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLI-PRL-RLFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccc-hhH-HHhcCCCcEEEEEEchhcCC
Confidence 4444467888888999999999999987442222 222 22335789999999999964
No 396
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=97.56 E-value=0.00049 Score=58.65 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=56.1
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEe
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITA 579 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~ 579 (657)
|.+.|+.+..++..|.+++++|++|+|+.||.|.... .....+|..++.. ..++..+ +|-.+++
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~-----------~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i 69 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNST-----------KGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV 69 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECC-----------CCcEEEeeEEEEEcCCCceECCEeCCCCEEEE
Confidence 3567899999999999999999999999999997111 1122345455432 2344444 5888888
Q ss_pred cCCCCCCCCCeEE
Q 036359 580 QGLQDAIAGTSLY 592 (657)
Q Consensus 580 ~gl~~~~aG~~l~ 592 (657)
.|++++..|++|.
T Consensus 70 ~g~~~~~~Gdtl~ 82 (83)
T cd04088 70 AGLKDTATGDTLC 82 (83)
T ss_pred ECCCCCccCCEee
Confidence 9999999999874
No 397
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.53 E-value=0.0001 Score=69.44 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=79.0
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
++-...|+++|+...|||||+-...+...... .|+..|..+..-.- .+ .+..+ .+.|||..|++.|
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~----~~q~~GvN~mdkt~------~i-~~t~I---sfSIwdlgG~~~~ 82 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE----YTQTLGVNFMDKTV------SI-RGTDI---SFSIWDLGGQREF 82 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHH----HHHHhCccceeeEE------Ee-cceEE---EEEEEecCCcHhh
Confidence 44556699999999999999999988766432 34444443332110 00 00011 2789999999999
Q ss_pred hhhhhcCCCCCceeeEeecccCCCch-hHHHHHHHHHhcCCc--eEEEecccccc
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKP-QTIESLDLLKERSVD--FIIALSKADKL 425 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~-qt~e~l~~l~~~~vP--iIvvlNKiDl~ 425 (657)
.++..-....+-.+++++|.+....- .-.++.++++..|.- -|+|++|.|..
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 99988777778889999999873322 222344566666532 47789999975
No 398
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=97.51 E-value=0.0004 Score=59.64 Aligned_cols=78 Identities=13% Similarity=0.269 Sum_probs=56.3
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEE--eccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEE
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV--EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKI 577 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~--gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i 577 (657)
|++.|+.+..++..|.+++++|++|+|+.||.|. .+.. .....+|.+++.. ..++..+ +|-.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~----------~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~ 70 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDG----------KIEKAKITKLFGFEGLKRVEVEEAEAGDIV 70 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCC----------CEEEEEEeeEeeeeCCCeeECcEECCCCEE
Confidence 4688999999999999999999999999999997 2210 0112344454322 1334444 47777
Q ss_pred EecCCCCCCCCCeEE
Q 036359 578 TAQGLQDAIAGTSLY 592 (657)
Q Consensus 578 ~~~gl~~~~aG~~l~ 592 (657)
.+.||+++..|++|.
T Consensus 71 ~i~gl~~~~~Gdtl~ 85 (86)
T cd03691 71 AIAGIEDITIGDTIC 85 (86)
T ss_pred EEECCCCCcccceec
Confidence 888999999999874
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=97.51 E-value=8.9e-05 Score=78.77 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+...+++|+|++|+|||||+|+|++..
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 455679999999999999999999764
No 400
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.51 E-value=0.00073 Score=55.64 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=55.9
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cc--cEEEec
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QG--IKITAQ 580 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~g--v~i~~~ 580 (657)
+.+.|..++.+++.|.+++++|.+|+|++||.|. .|.. .....+|.+++.++..+..+ +| +.+.+.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~----------~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~ 70 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGG----------GGVKGKVKSLKRFKGEVDEAVAGDIVGIVLK 70 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCC----------ceeEEEEeEeEecCceeceecCCCEEEEEEc
Confidence 3578999999999999999999999999999998 4421 22456788888777666654 34 333333
Q ss_pred CCCCCCCCCeEE
Q 036359 581 GLQDAIAGTSLY 592 (657)
Q Consensus 581 gl~~~~aG~~l~ 592 (657)
....+..|+.|.
T Consensus 71 ~~~~~~~g~~l~ 82 (83)
T cd01342 71 DKDDIKIGDTLT 82 (83)
T ss_pred cccccCCCCEec
Confidence 333467787763
No 401
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.50 E-value=0.00062 Score=72.98 Aligned_cols=125 Identities=22% Similarity=0.183 Sum_probs=67.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc------cccccCceeeec-cc------eeeecccccchhhccccc---------c
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV------QEGEAGGITQQI-GA------TYFPVENIQKRTEKLNAD---------A 355 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v------~~~~~~GiT~~i-g~------~~~~~~~~~~~~~~~~~~---------~ 355 (657)
|+.+|-|.-|+||||||++|+...- -.++.|-+.++- +. ..+...+-. .|.++... .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGC-ICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGC-ICCTVRDDLLPALERLLR 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCce-EEEeccchhHHHHHHHHh
Confidence 6788999999999999999986542 122233233221 10 111111100 01111000 0
Q ss_pred ccCCCcEEEEeCCCCCcchhhh--------hcCCCCCceeeEeecccCCCchhHH---HHHHHHHhcCCceEEEeccccc
Q 036359 356 KLKVPGLLVVDTPGHESFTNLR--------SWGPGLCDIAILVVDIMDGIKPQTI---ESLDLLKERSVDFIIALSKADK 424 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~--------~~g~~~aD~aIlVVDa~~g~~~qt~---e~l~~l~~~~vPiIvvlNKiDl 424 (657)
....+..+||-|-|........ ....-..|.+|-|||+.+....... ....++. .-=++++||+|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVLNKTDL 157 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEEecccC
Confidence 1223679999999976542221 1122336789999999985543321 1112222 234889999999
Q ss_pred cc
Q 036359 425 LY 426 (657)
Q Consensus 425 ~~ 426 (657)
+.
T Consensus 158 v~ 159 (323)
T COG0523 158 VD 159 (323)
T ss_pred CC
Confidence 85
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=97.49 E-value=0.00013 Score=81.05 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=36.8
Q ss_pred CCcEEEEeCCCCCcchhh-h-----hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 359 VPGLLVVDTPGHESFTNL-R-----SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~-~-----~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
.+.++||||||...+... + ......++.++||+|++.| .........+.. .++ .-+++||+|-.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence 467999999996543211 1 1112357788999998653 222233332222 344 35677999953
No 403
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.48 E-value=0.00032 Score=60.47 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=52.7
Q ss_pred eEEEEEe---ecCceeEEEEEEEeeeecCCCEEEecc---ccchhhccCCCCCceeEEeeeeecccccccc-cccEEEec
Q 036359 508 TILEVKV---CEGYGTTIDVVLINGVLHEGDKIVEPI---DTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQ 580 (657)
Q Consensus 508 ~Vlev~~---~~g~GtVv~g~v~~G~Lk~Gd~I~gp~---~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~ 580 (657)
.|+.+.. ++..|.+++++|++|+|+.||.|..+. ..+|..|+.++... +.++..+ +|-.+++.
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~----------~~~v~~a~aGdIv~v~ 71 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQD----------RETVDEAYPGDIIGLV 71 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCC----------eeEcCEECCCCEEEEE
Confidence 5677777 888999999999999999999997111 11222333222221 2344444 58888889
Q ss_pred CCCCCCCCCeEE
Q 036359 581 GLQDAIAGTSLY 592 (657)
Q Consensus 581 gl~~~~aG~~l~ 592 (657)
||+++..|++|+
T Consensus 72 gl~~~~~Gdtl~ 83 (85)
T cd03689 72 NPGNFQIGDTLT 83 (85)
T ss_pred CCCCccccCEee
Confidence 999999999986
No 404
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.48 E-value=0.00016 Score=76.00 Aligned_cols=56 Identities=23% Similarity=0.172 Sum_probs=41.1
Q ss_pred CCCCcc-hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 368 PGHESF-TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 368 PGh~~f-~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
|||..- .......+..+|++|+|+|+..+...........+ .+.|+|+|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 888642 34455678899999999999886655444333433 378999999999996
No 405
>PRK13796 GTPase YqeH; Provisional
Probab=97.46 E-value=9.3e-05 Score=80.86 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=36.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCc------ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
.+.|+|.+|+|||||||+|+... ...+..+|+|.++. .+++. .+..|+||||..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~-----------------~~~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLD-----------------DGSFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcC-----------------CCcEEEECCCcc
Confidence 48999999999999999998542 22344556554432 22221 136899999974
No 406
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.46 E-value=0.00017 Score=72.54 Aligned_cols=68 Identities=24% Similarity=0.227 Sum_probs=39.4
Q ss_pred CCcEEEEeCCCCCcch------hhhhcCCCCCc---eeeEeecccCCCchhHH-----HHHHHHHhcCCceEEEeccccc
Q 036359 359 VPGLLVVDTPGHESFT------NLRSWGPGLCD---IAILVVDIMDGIKPQTI-----ESLDLLKERSVDFIIALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~------~~~~~g~~~aD---~aIlVVDa~~g~~~qt~-----e~l~~l~~~~vPiIvvlNKiDl 424 (657)
..++.++||||+..+. ....+.+...| ++|-++|+.--..|... -.|.-+..+..|-|=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 3569999999976542 11222222233 45555665432223222 2333455668899999999999
Q ss_pred cc
Q 036359 425 LY 426 (657)
Q Consensus 425 ~~ 426 (657)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 65
No 407
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00047 Score=69.61 Aligned_cols=109 Identities=18% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccccc-----ccCceee-eccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEG-----EAGGITQ-QIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~-----~~~GiT~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
.|.|.+||+--+||||+.........+.. .+..+|+ ++..+ ...+.+||.||+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~s---------------------finf~v~dfPGQ 85 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNS---------------------FINFQVWDFPGQ 85 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhh---------------------hcceEEeecCCc
Confidence 35699999999999999887765432211 0111111 11111 113889999999
Q ss_pred Ccchhh---hhcCCCCCceeeEeecccCCC-chhHHHHHHHHHhcC----CceEEEeccccccc
Q 036359 371 ESFTNL---RSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKERS----VDFIIALSKADKLY 426 (657)
Q Consensus 371 ~~f~~~---~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~~~~----vPiIvvlNKiDl~~ 426 (657)
.+|..- ..+....+-..|+|||+.+.. .+-+.-|+...+.+. +.+=|++.|.|-++
T Consensus 86 ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 86 MDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred cccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 877422 233456788899999998754 344555555666654 44889999999775
No 408
>PRK00098 GTPase RsgA; Reviewed
Probab=97.45 E-value=0.00065 Score=72.20 Aligned_cols=45 Identities=27% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCCCceeeEeecccCCC-chhH-HHHHHHHHhcCCceEEEecccccc
Q 036359 381 PGLCDIAILVVDIMDGI-KPQT-IESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 381 ~~~aD~aIlVVDa~~g~-~~qt-~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
+..+|++|+|+|+.+.. .... ...+..+...++|+|+|+||+|+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 47899999999997643 2222 234455677899999999999995
No 409
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.45 E-value=0.00062 Score=61.16 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=62.3
Q ss_pred ccccceeEEEEEeec--------CceeEEEEEEEeeeecCCCEEE-eccccchh-hccCCCCCceeEEeeeeeccccccc
Q 036359 502 RNEVQCTILEVKVCE--------GYGTTIDVVLINGVLHEGDKIV-EPIDTKIQ-ALLTPHPMKELRVKGAYQHHKEIKA 571 (657)
Q Consensus 502 ~~~~~~~Vlev~~~~--------g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr-~ll~p~~~~e~rVksi~~~~~~v~~ 571 (657)
..++.|+|.++|.+. +.|+|+.|.|.+|.|++||.|- -|...... .=+...| ...+|.|+++.++.+..
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~p-i~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRP-IFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEE-EEEEEEEEEecCccccE
Confidence 467899999999999 9999999999999999999997 33211110 0011223 24689999999999998
Q ss_pred cc-c--cEE---EecCCCC--CCCCCeE
Q 036359 572 AQ-G--IKI---TAQGLQD--AIAGTSL 591 (657)
Q Consensus 572 a~-g--v~i---~~~gl~~--~~aG~~l 591 (657)
|. | +.| ..++|.. ..+|+++
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~ 109 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVV 109 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEe
Confidence 84 3 444 3345543 3555544
No 410
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0003 Score=73.66 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=64.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccc-cCceeee----------------ccceeeecccccchhhccccccccC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGE-AGGITQQ----------------IGATYFPVENIQKRTEKLNADAKLK 358 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~-~~GiT~~----------------ig~~~~~~~~~~~~~~~~~~~~~~~ 358 (657)
+..+++|+|++|+|||||+..|.......+. .+-++.+ +++.++...........+..-....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3467999999999999999988654221111 1111110 0000000000000000000000112
Q ss_pred CCcEEEEeCCCCCcchhh----hh--cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 359 VPGLLVVDTPGHESFTNL----RS--WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~----~~--~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+.+.||||||...+... +. ......|.++||+|++.+. .+..+.+......++ -=++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~-~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCC-CEEEEEeecCCC
Confidence 457999999997643211 11 1233567889999987422 122333444444333 356779999864
No 411
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00023 Score=78.11 Aligned_cols=67 Identities=19% Similarity=0.019 Sum_probs=38.1
Q ss_pred CCCcEEEEeCCCCCcchhh----hhcC---CCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 358 KVPGLLVVDTPGHESFTNL----RSWG---PGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~----~~~g---~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+.++||||||......+ .... .....-++||+|++.+.... .+.+......+ +-=++++|+|-..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCCC
Confidence 4567999999997543221 1111 12123588999998863222 23333333222 2356779999764
No 412
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.42 E-value=0.00034 Score=71.30 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=53.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch----
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT---- 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~---- 374 (657)
.|+++|.+.+|||||+..|.+........-+.| ... +.....++...+.+.|.||...-.
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyeftt------l~~----------vpG~~~y~gaKiqlldlpgiiegakdgk 124 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTT------LTT----------VPGVIRYKGAKIQLLDLPGIIEGAKDGK 124 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCcccccccee------EEE----------ecceEeccccceeeecCcchhcccccCC
Confidence 489999999999999999998653221111111 111 111223555679999999964321
Q ss_pred ---hhhhcCCCCCceeeEeecccCCC
Q 036359 375 ---NLRSWGPGLCDIAILVVDIMDGI 397 (657)
Q Consensus 375 ---~~~~~g~~~aD~aIlVVDa~~g~ 397 (657)
..+...++-|+++++|+|+..++
T Consensus 125 grg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 125 GRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCccEEEEEeecccEEEEEeeccCcc
Confidence 23344567799999999997654
No 413
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.0004 Score=77.33 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCCCCcch----hh---hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 358 KVPGLLVVDTPGHESFT----NL---RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~----~~---~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+.++||||||+..+. .. +........-++||++++.+. ....+.+..+...++ --|++||+|-..
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet~ 371 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDETS 371 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEecccccc
Confidence 34679999999986542 11 111122345678888886532 122223344443332 357899999853
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.39 E-value=0.00019 Score=79.67 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=37.7
Q ss_pred CCCcEEEEeCCCCCcchhhhh------cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRS------WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~------~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
..+.+.||||||...+..... .....+|.++||+|++.| .........+. ..++ .=+++||+|-.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCc
Confidence 345699999999654321111 123357889999998753 23333333332 1234 35668999953
No 415
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.36 E-value=0.00063 Score=63.92 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=62.0
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
...-|..|+||||+.-.|....... |.+.- .+..+.. ...+. +.+.|||||++.. .....
T Consensus 3 ~~~~~kgg~gkt~~~~~~a~~~~~~----~~~~~----~vd~D~~---------~~~~~-yd~VIiD~p~~~~--~~~~~ 62 (139)
T cd02038 3 AVTSGKGGVGKTNISANLALALAKL----GKRVL----LLDADLG---------LANLD-YDYIIIDTGAGIS--DNVLD 62 (139)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHHC----CCcEE----EEECCCC---------CCCCC-CCEEEEECCCCCC--HHHHH
Confidence 3455688999999977765432211 11111 1111100 00011 5699999998643 33345
Q ss_pred CCCCCceeeEeecccCCCchhHHHHHHHHHhc--CCceEEEeccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESLDLLKER--SVDFIIALSKADK 424 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~--~vPiIvvlNKiDl 424 (657)
.+..+|.+|+|++.+..-...+...+..+... ..++.+++|+++.
T Consensus 63 ~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 63 FFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 67889999999998764444455555555433 3468899999975
No 416
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.00048 Score=76.24 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=63.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-cc-ccCc-eeee---cccee----------eecccccchhhccccccccCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EG-EAGG-ITQQ---IGATY----------FPVENIQKRTEKLNADAKLKV 359 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~-~~~G-iT~~---ig~~~----------~~~~~~~~~~~~~~~~~~~~~ 359 (657)
...+|+|+|+.|+|||||+..|.+..+. .+ ...| ++.+ +|+.. ++.............-..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 3456999999999999999988753211 11 1111 1111 11100 000000000000000112445
Q ss_pred CcEEEEeCCCCCcchhh------hhcCCCCCceeeEeecccCCCchhHHHH-HHHHHhcCCceEEEeccccccc
Q 036359 360 PGLLVVDTPGHESFTNL------RSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~------~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+.+.||||+|....... .........-.+||+|++.+ .++... +......++ -=++++|+|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~~-~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHGI-HGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCCC-CEEEEEeeeCCC
Confidence 67999999996643211 11222334567899998852 333333 223333332 356779999864
No 417
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.34 E-value=0.00059 Score=73.92 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+-|+.+|.|.-|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4578999999999999999999853
No 418
>PRK01889 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.00072 Score=73.69 Aligned_cols=46 Identities=26% Similarity=0.290 Sum_probs=38.1
Q ss_pred CCCCceeeEeecccCCCchhHHH-HHHHHHhcCCceEEEeccccccc
Q 036359 381 PGLCDIAILVVDIMDGIKPQTIE-SLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 381 ~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+.++|.+++|+++..++.+..++ .|..+...|+|.|||+||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 47799999999998778775554 55677888999999999999963
No 419
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=97.31 E-value=0.0016 Score=56.08 Aligned_cols=77 Identities=22% Similarity=0.203 Sum_probs=52.2
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeecc---cccccc-cccEEEe-
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHH---KEIKAA-QGIKITA- 579 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~---~~v~~a-~gv~i~~- 579 (657)
|.+.|+.+..++..|.++.++|++|+|+.||.|.-+... +..+|..++.++ .++..+ +|-.+++
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~-----------~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTG-----------KEYEVEEVGIFRPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCC-----------CeEEEEEEEEECCCccCCceECCCCEEEEE
Confidence 468899999999999999999999999999999711110 123444444332 233444 4655444
Q ss_pred cC---CCCCCCCCeEE
Q 036359 580 QG---LQDAIAGTSLY 592 (657)
Q Consensus 580 ~g---l~~~~aG~~l~ 592 (657)
.| ++++..|++|+
T Consensus 70 ~g~~~l~~~~~Gdtl~ 85 (86)
T cd03699 70 AGIKTVKDARVGDTIT 85 (86)
T ss_pred ccccccCccccccEee
Confidence 34 66688999885
No 420
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.00088 Score=68.87 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=80.0
Q ss_pred hhccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhcccc-ccccCCCcEEEEeCCC
Q 036359 291 AEENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNA-DAKLKVPGLLVVDTPG 369 (657)
Q Consensus 291 ~~~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~-~~~~~~~~l~iIDTPG 369 (657)
+..+--+..|..+|..|.|||||++.|+.+++......-.-..+.. +..+..+.. +..+ .++|+||.|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L--------~~~TyelqEsnvrl---KLtiv~tvG 104 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKL--------QANTYELQESNVRL---KLTIVDTVG 104 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCcee--------ecchhhhhhcCeeE---EEEEEeecc
Confidence 3344455669999999999999999999998765432211111111 111111111 1122 389999999
Q ss_pred CCcchh------------------h------hhcC-----CCCCceeeEeecccC-CCchhHHHHHHHHHhcCCceEEEe
Q 036359 370 HESFTN------------------L------RSWG-----PGLCDIAILVVDIMD-GIKPQTIESLDLLKERSVDFIIAL 419 (657)
Q Consensus 370 h~~f~~------------------~------~~~g-----~~~aD~aIlVVDa~~-g~~~qt~e~l~~l~~~~vPiIvvl 419 (657)
+.+-.+ . ..|. -+...+|+|.|..+. |+....+-.+..+. ..+.||-++
T Consensus 105 fGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvI 183 (406)
T KOG3859|consen 105 FGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVI 183 (406)
T ss_pred cccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHH
Confidence 654111 0 0111 134567788877542 33222221222121 246688899
Q ss_pred cccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCc
Q 036359 420 SKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLN 468 (657)
Q Consensus 420 NKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~ 468 (657)
-|.|.++ ++++..-...|+..|...|+.
T Consensus 184 AKaDtis---------------------K~eL~~FK~kimsEL~sngv~ 211 (406)
T KOG3859|consen 184 AKADTIS---------------------KEELKRFKIKIMSELVSNGVQ 211 (406)
T ss_pred HHhhhhh---------------------HHHHHHHHHHHHHHHHhcCce
Confidence 9999874 334444445777888777653
No 421
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.30 E-value=0.0003 Score=74.39 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=42.0
Q ss_pred CCCCCcc-hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 367 TPGHESF-TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 367 TPGh~~f-~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
-|||..- .......+..+|++|+|+|+..+...........+. +.|+|+|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 4898643 344556788999999999998876655444333333 78999999999986
No 422
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=97.30 E-value=0.0014 Score=55.69 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=52.7
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEe
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITA 579 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~ 579 (657)
|.+.|+.+..++. |.++.++|++|+|+.||.|..... .+..+|..++.. ..++..+ +|-.+++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~-----------~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i 68 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRT-----------GKKVRVPRLVRMHSNEMEEVEEAGAGDICAI 68 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCC-----------CCEEEEeEEEEEeCCCceEccEECCCCEEEE
Confidence 3578888888866 999999999999999999971111 123445555432 2234444 4767778
Q ss_pred cCCCCCCCCCeEE
Q 036359 580 QGLQDAIAGTSLY 592 (657)
Q Consensus 580 ~gl~~~~aG~~l~ 592 (657)
.|++ +..|++|.
T Consensus 69 ~g~~-~~~Gdtl~ 80 (81)
T cd04091 69 FGID-CASGDTFT 80 (81)
T ss_pred ECCC-cccCCEec
Confidence 8997 88999874
No 423
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.29 E-value=0.00032 Score=73.44 Aligned_cols=58 Identities=22% Similarity=0.438 Sum_probs=42.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc------ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
+.|.|+|-+|+|||||+|+++... ...|..+|+|+.++..+.-.. .+.+.+|||||.-
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~----------------rp~vy~iDTPGil 207 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH----------------RPPVYLIDTPGIL 207 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc----------------CCceEEecCCCcC
Confidence 458999999999999999997543 345667889988765332211 1348999999964
No 424
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.28 E-value=0.00049 Score=66.46 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=46.4
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
.+.||||||..... ....+..+|.+|+|++........+...+..+...+.+ +.+++|++|..
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 59999999864432 33456789999999998875555565666666666666 67899999863
No 425
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.28 E-value=0.00035 Score=70.83 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=52.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc-h---
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF-T--- 374 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f-~--- 374 (657)
.|+++|.+.+|||||+..|+.+....-..-..|-..- .....++...+.++|.||...- .
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcI----------------pGvi~y~ga~IQllDLPGIieGAsqgk 127 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCI----------------PGVIHYNGANIQLLDLPGIIEGASQGK 127 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEee----------------cceEEecCceEEEecCcccccccccCC
Confidence 4899999999999999999987643221111111111 1112334455999999996422 1
Q ss_pred ---hhhhcCCCCCceeeEeecccCC
Q 036359 375 ---NLRSWGPGLCDIAILVVDIMDG 396 (657)
Q Consensus 375 ---~~~~~g~~~aD~aIlVVDa~~g 396 (657)
......++-+|++++|+|++.+
T Consensus 128 GRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 128 GRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CCCceEEEEeecccEEEEEecCCcc
Confidence 1223345779999999999874
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.00061 Score=80.11 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=62.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc-cccc-c-Cce---eeecccee-ee-cccccchhh-------ccc-cccccCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV-QEGE-A-GGI---TQQIGATY-FP-VENIQKRTE-------KLN-ADAKLKVP 360 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~-~-~Gi---T~~ig~~~-~~-~~~~~~~~~-------~~~-~~~~~~~~ 360 (657)
.-+|+|+|+.|+||||++..|.+... ..+. . .-+ |..+|+.. +. +..+.+... .+. .-..+..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 34799999999999999999986542 1111 0 001 11111100 00 000000000 000 00123456
Q ss_pred cEEEEeCCCCCcchhh----h--hcCCCCCceeeEeecccCCCchhHHH-HHHHHHhc-CCc-eEEEeccccccc
Q 036359 361 GLLVVDTPGHESFTNL----R--SWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKER-SVD-FIIALSKADKLY 426 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~----~--~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~~-~vP-iIvvlNKiDl~~ 426 (657)
.++||||||....... . .......+-++||+|++.+ .+.+. .+..+... +++ -=++++|+|-..
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCC
Confidence 7999999994432111 1 1123446678999998852 22332 22223222 122 346689999753
No 427
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.00049 Score=83.98 Aligned_cols=118 Identities=22% Similarity=0.248 Sum_probs=67.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCcee--eeccceeeecccccchhhccccccccCCCcEEEEeCCCC---
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGIT--QQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH--- 370 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT--~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh--- 370 (657)
.-|.-+|||++|+||||++.. .+.++.-....|-. ...|..++.|- -...-++|||.|-
T Consensus 124 eLPWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdww---------------f~deaVlIDtaGry~~ 187 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWW---------------FTDEAVLIDTAGRYIT 187 (1188)
T ss_pred cCCceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcc---------------cccceEEEcCCcceec
Confidence 457789999999999998865 33333322111111 11121112110 0113689999992
Q ss_pred -C--cch---------hh--hhcCCCCCceeeEeecccCCC--chhHHH-HHHHHH----------hcCCceEEEecccc
Q 036359 371 -E--SFT---------NL--RSWGPGLCDIAILVVDIMDGI--KPQTIE-SLDLLK----------ERSVDFIIALSKAD 423 (657)
Q Consensus 371 -~--~f~---------~~--~~~g~~~aD~aIlVVDa~~g~--~~qt~e-~l~~l~----------~~~vPiIvvlNKiD 423 (657)
. ++. .+ ..|...-.|+|||.+|+.+-. .++..+ +...++ ...+|++|++||+|
T Consensus 188 q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~D 267 (1188)
T COG3523 188 QDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKAD 267 (1188)
T ss_pred ccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccc
Confidence 1 111 11 234556789999999998733 333332 222121 23679999999999
Q ss_pred cccCcc
Q 036359 424 KLYGWK 429 (657)
Q Consensus 424 l~~~w~ 429 (657)
+++|+.
T Consensus 268 ll~GF~ 273 (1188)
T COG3523 268 LLPGFE 273 (1188)
T ss_pred ccccHH
Confidence 998644
No 428
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.22 E-value=0.0011 Score=70.15 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=36.2
Q ss_pred CCCCceeeEeecccCCC-chhHHH-HHHHHHhcCCceEEEeccccccc
Q 036359 381 PGLCDIAILVVDIMDGI-KPQTIE-SLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 381 ~~~aD~aIlVVDa~~g~-~~qt~e-~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+..+|++|+|+|+.++. .....+ +|..+...++|+|+|+||+|+..
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 67899999999998865 444433 44556778999999999999963
No 429
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=97.21 E-value=0.0031 Score=53.73 Aligned_cols=75 Identities=25% Similarity=0.331 Sum_probs=57.3
Q ss_pred ccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeeccccccccc-c--cEEEec
Q 036359 504 EVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G--IKITAQ 580 (657)
Q Consensus 504 ~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g--v~i~~~ 580 (657)
|..+.|+..+...+.. ++.|.|..|+|++|..|-| ..--+|+||+.+++++..|. | |.|++.
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l~G--------------~~iG~I~sIe~~~k~v~~A~~G~eVai~Ie 68 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPLDG--------------RKIGRIKSIEDNGKNVDEAKKGDEVAISIE 68 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EECS--------------SCEEEEEEEEETTEEESEEETT-EEEEEEE
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCccCC--------------EEEEEEEEeEECCcCccccCCCCEEEEEEe
Confidence 5667888888888999 7777999999999987732 13367999999999999884 4 778888
Q ss_pred CCCCCCCCCeEEE
Q 036359 581 GLQDAIAGTSLYV 593 (657)
Q Consensus 581 gl~~~~aG~~l~v 593 (657)
|.-++..||.|||
T Consensus 69 g~~~i~eGDiLyV 81 (81)
T PF14578_consen 69 GPTQIKEGDILYV 81 (81)
T ss_dssp T--TB-TT-EEEE
T ss_pred CCccCCCCCEEeC
Confidence 8778899999986
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.18 E-value=0.00085 Score=73.09 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=63.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc-ccc--ccCceeee---cccee-e-ecccccchhhccc--------cccccCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV-QEG--EAGGITQQ---IGATY-F-PVENIQKRTEKLN--------ADAKLKVP 360 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v-~~~--~~~GiT~~---ig~~~-~-~~~~~~~~~~~~~--------~~~~~~~~ 360 (657)
+.+|+++|+.|+||||.|-.|....+ ..+ ..+-||.+ ||+.. + .+..+-+....+. .-..+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45599999999999999988864333 111 11112221 22210 0 0000000000000 01224556
Q ss_pred cEEEEeCCCCCcchhhhh----cCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 361 GLLVVDTPGHESFTNLRS----WGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~----~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+.||||.|+..+..+.. ..+ ....-+.||++++.-. ..-.+.+..+..+++. -+.++|+|-+.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhccCCcc-eeEEEcccccC
Confidence 799999999876543211 111 2334566777776411 1222333444444443 34569999864
No 431
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.16 E-value=0.00023 Score=76.59 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
++..|+|+|.+|+||||+||+|....+ ..|..+|+|..+.-.++. ..|.|+|+||..
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-------------------k~i~llDsPgiv 308 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-------------------KKIRLLDSPGIV 308 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-------------------CCceeccCCcee
Confidence 566799999999999999999987764 567778888766544332 248999999975
No 432
>PRK12288 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.00042 Score=75.15 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=35.5
Q ss_pred CCCCceeeEeecccCCCchhHHHHH-HHHHhcCCceEEEeccccccc
Q 036359 381 PGLCDIAILVVDIMDGIKPQTIESL-DLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 381 ~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+.++|.+++|++....+....++.| ..+...++|+|+|+||+|+..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 4679999999998776666555543 455667899999999999964
No 433
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.00094 Score=75.12 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..+|+|+|+.|+||||++..|.+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4579999999999999999998644
No 434
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.13 E-value=0.00073 Score=72.46 Aligned_cols=129 Identities=22% Similarity=0.145 Sum_probs=65.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc------ccccccCceeee---cc---ceeeecccccchhhccccc--------c
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN------VQEGEAGGITQQ---IG---ATYFPVENIQKRTEKLNAD--------A 355 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~------v~~~~~~GiT~~---ig---~~~~~~~~~~~~~~~~~~~--------~ 355 (657)
+-|+.+|.|.-|+||||||++|+... +-.++.|.+..+ ++ ...+...+.. .|..+..+ .
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GC-iCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGC-ICCSRSNELEDALLDLL 81 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCE-EEEccCchHHHHHHHHH
Confidence 45889999999999999999998542 111111211110 00 0011111100 00011000 0
Q ss_pred -cc----CCCcEEEEeCCCCCcchhhhhcC--------CCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccc
Q 036359 356 -KL----KVPGLLVVDTPGHESFTNLRSWG--------PGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKA 422 (657)
Q Consensus 356 -~~----~~~~l~iIDTPGh~~f~~~~~~g--------~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKi 422 (657)
.. ..+...||.|.|..+........ .-..|.+|.|||+.+.........+ .......-=+|++||+
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~-~~~Qi~~AD~IvlnK~ 160 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI-AQSQVGYADRILLTKT 160 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHH-HHHHHHhCCEEEEecc
Confidence 00 13668999999987654332211 1235889999999874321110011 1112222357899999
Q ss_pred cccc
Q 036359 423 DKLY 426 (657)
Q Consensus 423 Dl~~ 426 (657)
|+..
T Consensus 161 Dl~~ 164 (318)
T PRK11537 161 DVAG 164 (318)
T ss_pred ccCC
Confidence 9974
No 435
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.11 E-value=0.001 Score=59.81 Aligned_cols=84 Identities=8% Similarity=0.008 Sum_probs=50.4
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+++|+.|+|||+|+.++....+... ..+ .+++ |..+..
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~--~~~-~t~~-------------------------------------~~~~~~ 41 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYV--PTV-FTIG-------------------------------------IDVYDP 41 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcccc--Cce-ehhh-------------------------------------hhhccc
Confidence 489999999999999999865443211 000 0111 222333
Q ss_pred cCCCCCceeeEeecccCCCchhHHHH-H-HHHH---hcCCceEEEecccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIES-L-DLLK---ERSVDFIIALSKADKL 425 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~-l-~~l~---~~~vPiIvvlNKiDl~ 425 (657)
.....++.+++|++... .++... | ..+. ...+|++++.||+|+.
T Consensus 42 ~~~~s~~~~~~v~~~~~---~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYESFDVVLQCWRVDD---RDSADNKNVPEVLVGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred cccCCCCEEEEEEEccC---HHHHHHHhHHHHHhcCCCCCcEEEEeechhhH
Confidence 44566788888787766 333332 1 2222 2346788899999984
No 436
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.07 E-value=0.00047 Score=73.16 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.++.+|+|+|-.|+||||.|..|..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHH
Confidence 4677899999999999999999864
No 437
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.05 E-value=0.0013 Score=72.77 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=43.0
Q ss_pred CcEEEEeCCCCCc-------------chhhhhcCCCCCceeeEeecccCCCchhHH----HHHHHHHhcCCceEEEeccc
Q 036359 360 PGLLVVDTPGHES-------------FTNLRSWGPGLCDIAILVVDIMDGIKPQTI----ESLDLLKERSVDFIIALSKA 422 (657)
Q Consensus 360 ~~l~iIDTPGh~~-------------f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~----e~l~~l~~~~vPiIvvlNKi 422 (657)
+.++++|.||... ...|...++.+++.+||||- +|.....+ .....+.-+|...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 3478999999543 23455667889999999984 22211111 22234555677899999999
Q ss_pred cccc
Q 036359 423 DKLY 426 (657)
Q Consensus 423 Dl~~ 426 (657)
|+..
T Consensus 490 DlAE 493 (980)
T KOG0447|consen 490 DLAE 493 (980)
T ss_pred chhh
Confidence 9863
No 438
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.99 E-value=0.0024 Score=62.20 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=51.1
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+.++|||||+.... .....+..+|.+|+|+..+......+...+..+...++|+.+|+|++|..
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 4578999999965432 33345678999999999887555566677778888899999999999974
No 439
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.97 E-value=0.0065 Score=66.46 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..|+|+|+|-+|||||+.+|...
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHH
Confidence 34999999999999999999743
No 440
>PRK13695 putative NTPase; Provisional
Probab=96.95 E-value=0.0015 Score=63.47 Aligned_cols=42 Identities=14% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCCCCceeeEeec---ccCCCchhHHHHHHHHHhcCCceEEEecccc
Q 036359 380 GPGLCDIAILVVD---IMDGIKPQTIESLDLLKERSVDFIIALSKAD 423 (657)
Q Consensus 380 g~~~aD~aIlVVD---a~~g~~~qt~e~l~~l~~~~vPiIvvlNKiD 423 (657)
.+..+|+ +++| ..+...++..+.+..+...+.|+|+++||..
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred ccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 3445665 6888 5555667777888877788999999999854
No 441
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.95 E-value=0.0015 Score=66.11 Aligned_cols=64 Identities=25% Similarity=0.235 Sum_probs=45.9
Q ss_pred CCCcEEEEeCC-CCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcC-CceEEEeccccc
Q 036359 358 KVPGLLVVDTP-GHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS-VDFIIALSKADK 424 (657)
Q Consensus 358 ~~~~l~iIDTP-Gh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~-vPiIvvlNKiDl 424 (657)
+.+.+.++||- |.+.|..- ....+|++|+|+|.+..-.......-.+...++ .++.||+||+|-
T Consensus 132 ~~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 33668999995 77777532 347799999999987633333333445677788 579999999996
No 442
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.93 E-value=0.0012 Score=71.52 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=51.7
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-----------CchhHHHHHHHHHh----cCCceEEEeccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-----------IKPQTIESLDLLKE----RSVDFIIALSKADK 424 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-----------~~~qt~e~l~~l~~----~~vPiIvvlNKiDl 424 (657)
..+.+||++|+..+...|..++..++++|+|||.++- ....++..+..+.. .++|+|+++||+|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4589999999999999999999999999999999862 12334444433332 36899999999998
Q ss_pred cc
Q 036359 425 LY 426 (657)
Q Consensus 425 ~~ 426 (657)
..
T Consensus 264 ~~ 265 (342)
T smart00275 264 FE 265 (342)
T ss_pred HH
Confidence 63
No 443
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.92 E-value=0.0025 Score=71.56 Aligned_cols=107 Identities=22% Similarity=0.362 Sum_probs=64.2
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhc
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSW 379 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~ 379 (657)
|.|+|+-++|||.|++++++..+..+..+..........+.... ....+.+.|.+-. ....+..
T Consensus 428 C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g--------------~~k~LiL~ei~~~-~~~~l~~- 491 (625)
T KOG1707|consen 428 CFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKG--------------QQKYLILREIGED-DQDFLTS- 491 (625)
T ss_pred EEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecc--------------ccceEEEeecCcc-ccccccC-
Confidence 78999999999999999999776652212111111111111000 0122555555432 2222222
Q ss_pred CCCCCceeeEeecccCCCchhHHHHHHHHH-----hcCCceEEEecccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIESLDLLK-----ERSVDFIIALSKADKL 425 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-----~~~vPiIvvlNKiDl~ 425 (657)
.-..||++++|+|.++ +..+.++.... ...+|+++|..|+|+-
T Consensus 492 ke~~cDv~~~~YDsS~---p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 492 KEAACDVACLVYDSSN---PRSFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred ccceeeeEEEecccCC---chHHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 2277999999999996 55555443222 2579999999999985
No 444
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.81 E-value=0.00038 Score=81.14 Aligned_cols=131 Identities=20% Similarity=0.235 Sum_probs=80.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeec---cceee--------------------ecccccc----h
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI---GATYF--------------------PVENIQK----R 347 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~i---g~~~~--------------------~~~~~~~----~ 347 (657)
+.-|.|+|+|...+||||.+..|+|-.|.....+.+|... ..... ++..++. .
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 5567799999999999999999998654422222222211 00000 0100000 0
Q ss_pred hhcc---cc-----ccc-----cCCCcEEEEeCCCCCc-------------chhhhhcCCCCCceeeEeecccCCCchhH
Q 036359 348 TEKL---NA-----DAK-----LKVPGLLVVDTPGHES-------------FTNLRSWGPGLCDIAILVVDIMDGIKPQT 401 (657)
Q Consensus 348 ~~~~---~~-----~~~-----~~~~~l~iIDTPGh~~-------------f~~~~~~g~~~aD~aIlVVDa~~g~~~qt 401 (657)
+..+ .. ..+ .....+++||.||... ...|...++...+++|+.|...+ ..--|
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~at 185 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDIAT 185 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhhhc
Confidence 0000 00 011 1224589999999643 34677888999999999988765 44456
Q ss_pred HHHHHHHHhc---CCceEEEeccccccc
Q 036359 402 IESLDLLKER---SVDFIIALSKADKLY 426 (657)
Q Consensus 402 ~e~l~~l~~~---~vPiIvvlNKiDl~~ 426 (657)
.++|.+++.. |...|.|++|.|+..
T Consensus 186 s~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 186 SPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred CHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 6777777765 456899999999975
No 445
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.79 E-value=0.0024 Score=56.32 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=44.9
Q ss_pred eEEEEe-cCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 299 ICCILG-HVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 299 ~V~viG-~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
+|+|+| ..|+||||+.-.|.......+ . ....+..+. .+.+.|||||+.... ..
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~----~----~vl~~d~d~---------------~~d~viiD~p~~~~~--~~ 55 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRG----K----RVLLIDLDP---------------QYDYIIIDTPPSLGL--LT 55 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCC----C----cEEEEeCCC---------------CCCEEEEeCcCCCCH--HH
Confidence 367777 679999999887764332211 1 111111111 045899999987533 23
Q ss_pred hcCCCCCceeeEeecccC
Q 036359 378 SWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~ 395 (657)
...+..+|.+|++++.+.
T Consensus 56 ~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 56 RNALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHHHCCEEEEeccCCH
Confidence 356677999999998765
No 446
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.77 E-value=0.0043 Score=59.95 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=49.2
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCce-EEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDF-IIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPi-IvvlNKiDl~ 425 (657)
..+.+.|||||+...-.......+..+|.+|+|+.....-...+...+..+...++++ -+++|+++..
T Consensus 66 ~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 3567999999986421111111136789999999887766677778888899999985 5789999864
No 447
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.76 E-value=0.0034 Score=53.42 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=56.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh-h
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL-R 377 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~-~ 377 (657)
++++.|..|+||||++..|....... |......+ .+.|+|+||....... .
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~----------g~~v~~~~------------------d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKR----------GKRVLLID------------------DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC----------CCeEEEEC------------------CEEEEeCCCCccchhhhh
Confidence 37888999999999999887543221 11111111 2899999987543321 1
Q ss_pred hcCCCCCceeeEeecccCCCchhHHHHH----HHHHhcCCceEEEec
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKERSVDFIIALS 420 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~~~vPiIvvlN 420 (657)
......+|.++++++............+ ........++.+++|
T Consensus 53 ~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 53 LLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3456789999999988764433333321 122223345666665
No 448
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=96.75 E-value=0.0045 Score=54.27 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=53.1
Q ss_pred ceeEEEEEeecCc-eeEEEEEEEeeeecCCCEEE--eccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEE
Q 036359 506 QCTILEVKVCEGY-GTTIDVVLINGVLHEGDKIV--EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKI 577 (657)
Q Consensus 506 ~~~Vlev~~~~g~-GtVv~g~v~~G~Lk~Gd~I~--gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i 577 (657)
.+.|+.+..++.. |.+..++|++|+|+.||.|. +|.... -++......+|..++.. ..++..+ +|-.+
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~----~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv 77 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSL----DDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWV 77 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCC----ccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEE
Confidence 4678888888877 77999999999999999997 432100 00111223455565532 2344444 47777
Q ss_pred EecCCCCCCCCCeEE
Q 036359 578 TAQGLQDAIAGTSLY 592 (657)
Q Consensus 578 ~~~gl~~~~aG~~l~ 592 (657)
++.||++...|...+
T Consensus 78 ~v~gl~~~~~~~~t~ 92 (94)
T cd04090 78 LIKGIDSSIVKTATI 92 (94)
T ss_pred EEECcchheeceEEe
Confidence 778888776666543
No 449
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.74 E-value=0.0031 Score=68.89 Aligned_cols=55 Identities=24% Similarity=0.186 Sum_probs=38.4
Q ss_pred CCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 370 HESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 370 h~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.++|..+.......++++|+|||+.+.... ....+.... .+.|+|+|+||+|++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s-~~~~l~~~~-~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS-LIPELKRFV-GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC-ccHHHHHHh-CCCCEEEEEEchhhCC
Confidence 346888888788889999999999764322 112222111 2679999999999974
No 450
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=96.72 E-value=0.00057 Score=61.66 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=27.1
Q ss_pred HHHHhhhhcc---ccccEEEEcCccchHHHHHHhcccC
Q 036359 622 MKSVMSKVDK---TCEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 622 ~~~~~~~~~~---~~~~v~vkad~~gslea~~~~l~~~ 656 (657)
|++++..+.. ...|||||||++||||||..+|.+.
T Consensus 2 le~~~~~~~~~~~~~~~iIiKaD~~GslEAi~~~l~~~ 39 (108)
T PF11987_consen 2 LEELFQEIEEEEIKELNIIIKADVQGSLEAIKNSLEKL 39 (108)
T ss_dssp HSCCCCCHCC-CSSCCEEEEEESSHHHHHHHHHHHCCT
T ss_pred HHHHHHHHhccCCceeeEEEEECchhhHHHHHHHHHhc
Confidence 3444555543 3579999999999999999999865
No 451
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.70 E-value=0.0025 Score=57.06 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=41.7
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCC----ceEEEecc
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSV----DFIIALSK 421 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~v----PiIvvlNK 421 (657)
.+.|||||+.... .....+..+|.+|+|++.+..-...+...+..+...+. .+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4899999987543 33345678999999998877555556666666666554 36688885
No 452
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.70 E-value=0.00073 Score=72.44 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ 323 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~ 323 (657)
..-|++||++|+||||+||.|+..++-
T Consensus 307 qISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 307 QISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred ceeeeeecCCCCchHHHHHHHhhcccc
Confidence 445999999999999999999987754
No 453
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.69 E-value=0.0024 Score=69.85 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=55.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccccc-----------cc------Cceeeeccceeeecccccchhhcc-cc---c
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEG-----------EA------GGITQQIGATYFPVENIQKRTEKL-NA---D 354 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~-----------~~------~GiT~~ig~~~~~~~~~~~~~~~~-~~---~ 354 (657)
++.+|.++|--|+||||.+..|.......+ +. ..+..+++..+|...... ....+ .. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~-~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK-DPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC-CHHHHHHHHHHH
Confidence 455689999999999999988853211111 11 112223444444432111 11111 11 1
Q ss_pred cccCCCcEEEEeCCCCCcch----hh--hhcCCCCCceeeEeecccCC
Q 036359 355 AKLKVPGLLVVDTPGHESFT----NL--RSWGPGLCDIAILVVDIMDG 396 (657)
Q Consensus 355 ~~~~~~~l~iIDTPGh~~f~----~~--~~~g~~~aD~aIlVVDa~~g 396 (657)
.....+.+.||||.|-...- .. .....-.+|-++||||++-|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 12234579999999943321 11 12345678999999999875
No 454
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.56 E-value=0.0012 Score=62.36 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV 322 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v 322 (657)
|+|+|+|+.|+|||||+..|+..-.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999986543
No 455
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.55 E-value=0.0049 Score=64.27 Aligned_cols=29 Identities=38% Similarity=0.477 Sum_probs=24.5
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCC
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
...-|-|+-.|.|+-|+|||||+|.|+..
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHcc
Confidence 34467788899999999999999999854
No 456
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=96.45 E-value=0.015 Score=50.76 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=51.8
Q ss_pred ceeEEEEEeec-CceeEEEEEEEeeeecCCCEEE--eccccchhhccCCCCCceeEEeeeeecc----cccccc-cccEE
Q 036359 506 QCTILEVKVCE-GYGTTIDVVLINGVLHEGDKIV--EPIDTKIQALLTPHPMKELRVKGAYQHH----KEIKAA-QGIKI 577 (657)
Q Consensus 506 ~~~Vlev~~~~-g~GtVv~g~v~~G~Lk~Gd~I~--gp~~~~Vr~ll~p~~~~e~rVksi~~~~----~~v~~a-~gv~i 577 (657)
.+.|+.+..++ +.|.+.+++|++|+|+.||.|. ++... + -+.......+|..++..+ .++..+ +|-.+
T Consensus 2 v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~-~---~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv 77 (93)
T cd03700 2 VMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYS-P---EDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIV 77 (93)
T ss_pred eEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCC-C---CccCcEEEEEEeEEEEEcCCCEEEccccCCCCEE
Confidence 35677777888 8999999999999999999996 32110 0 000012234555665432 344444 47777
Q ss_pred EecCCCCCCCCCeE
Q 036359 578 TAQGLQDAIAGTSL 591 (657)
Q Consensus 578 ~~~gl~~~~aG~~l 591 (657)
.+.|++.+..|++.
T Consensus 78 ~i~g~~~~~~g~~~ 91 (93)
T cd03700 78 LIVGLDQLKSGTTA 91 (93)
T ss_pred EEECCccCceEeEe
Confidence 77788777777653
No 457
>PRK01889 GTPase RsgA; Reviewed
Probab=96.45 E-value=0.0019 Score=70.43 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
-+++|+|.+|+|||||+|.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 469999999999999999999754
No 458
>PHA02518 ParA-like protein; Provisional
Probab=96.38 E-value=0.0059 Score=60.66 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCch---hHHHHHHHHHhc--CCc-eEEEeccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKP---QTIESLDLLKER--SVD-FIIALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~---qt~e~l~~l~~~--~vP-iIvvlNKiDl 424 (657)
.+.++||||||.. .......+..+|.+|+++..+.--.. ++...+..+... +.| +.++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 4679999999873 34455677899999999987753222 233333332222 455 4566677654
No 459
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.19 E-value=0.0038 Score=63.97 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHH------hcCCceEEEecccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLK------ERSVDFIIALSKAD 423 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~------~~~vPiIvvlNKiD 423 (657)
..+.++||||||+.. ......+..+|++|+.+..+.-....+...+..+. ..++|+.+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 347799999999864 33444667899999988776533333333333222 23678889999987
No 460
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.17 E-value=0.0081 Score=47.70 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCCceeeEeecccCCCchhHHHHHHH---HHh-c-CCceEEEecccc
Q 036359 381 PGLCDIAILVVDIMDGIKPQTIESLDL---LKE-R-SVDFIIALSKAD 423 (657)
Q Consensus 381 ~~~aD~aIlVVDa~~g~~~qt~e~l~~---l~~-~-~vPiIvvlNKiD 423 (657)
.+..++++|++|.+........+.+.+ ++. + +.|+|+|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 367889999999987443322233322 332 3 799999999998
No 461
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.17 E-value=0.011 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.3
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
++.|+|+|+|++|||||||+.+|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 46788999999999999999999864
No 462
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.11 E-value=0.01 Score=57.96 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=33.3
Q ss_pred ceeeEeecccCCCchhHHHHHHH--HHhcCCceEEEeccccccc
Q 036359 385 DIAILVVDIMDGIKPQTIESLDL--LKERSVDFIIALSKADKLY 426 (657)
Q Consensus 385 D~aIlVVDa~~g~~~qt~e~l~~--l~~~~vPiIvvlNKiDl~~ 426 (657)
|++++|+|+..++.......+.. +...+.|+|+|+||+|++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998776655555555 4456789999999999974
No 463
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.09 E-value=0.0039 Score=65.79 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+..+|+|+|++|+||||++..|....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34479999999999999999987543
No 464
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.012 Score=63.40 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.6
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
..++-+|.++|-.|+||||.|..|.
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA 122 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLA 122 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHH
Confidence 3467789999999999999998885
No 465
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.006 Score=64.67 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
-.+|+++|.-|+|||||++.|.+.+
T Consensus 188 f~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccC
Confidence 3458999999999999999998764
No 466
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.92 E-value=0.027 Score=58.62 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=39.5
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCch---hHHHHHHHH-HhcCCce-EEEeccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKP---QTIESLDLL-KERSVDF-IIALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~---qt~e~l~~l-~~~~vPi-IvvlNKiDl 424 (657)
.|.+.||||||...... +...+..+|.+|+++..+..-.. .+...+..+ ...++++ .+++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 46799999998643221 22246789999999887643222 233333322 2345664 478899884
No 467
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=95.72 E-value=0.17 Score=57.75 Aligned_cols=15 Identities=40% Similarity=0.559 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 036359 115 EKGEQKRQEELDRQA 129 (657)
Q Consensus 115 ~eee~~~~ee~~~~~ 129 (657)
++|.-.++++.+.|+
T Consensus 322 E~Ek~kKqeek~KR~ 336 (811)
T KOG4364|consen 322 EQEKLKKQEEKQKRA 336 (811)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444434444433333
No 468
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.0055 Score=62.78 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..=+|+|+||+|||||||++.|.|-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998754
No 469
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.49 E-value=0.017 Score=61.11 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=25.4
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+...|.|.++|+|++|-||||++.++....
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 345677779999999999999999998654
No 470
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.46 E-value=0.0065 Score=56.42 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.0
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+++|++|||||||+..|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999873
No 471
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.43 E-value=0.0093 Score=48.29 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhhhhhhhcCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.+|.|+.|+|||||+++|...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 472
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.41 E-value=0.0026 Score=58.13 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=19.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..+.|.|.+|+|||+++..+....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 348999999999999999998754
No 473
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.37 E-value=0.062 Score=53.96 Aligned_cols=65 Identities=9% Similarity=-0.034 Sum_probs=38.4
Q ss_pred CCcEEEEeCCCCCcchhhhhcCC--CCCceeeEeecccCCCc---hhHHHHHHHHHhc-CCc-eEEEeccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGP--GLCDIAILVVDIMDGIK---PQTIESLDLLKER-SVD-FIIALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~--~~aD~aIlVVDa~~g~~---~qt~e~l~~l~~~-~vP-iIvvlNKiDl 424 (657)
.|.+.||||||........ ..+ ..+|.+|+|+..+.--. ....+.+..++.. +++ ..+++|+++.
T Consensus 116 ~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccc-cccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 4779999999875322221 122 47999999997654111 1222333333322 555 4589999985
No 474
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.33 E-value=0.03 Score=58.90 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.7
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++|+|+|+.|||||||+..|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999974
No 475
>PRK13796 GTPase YqeH; Provisional
Probab=95.19 E-value=0.05 Score=59.60 Aligned_cols=52 Identities=31% Similarity=0.279 Sum_probs=32.9
Q ss_pred cchhhhhcCCCCCc-eeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 372 SFTNLRSWGPGLCD-IAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 372 ~f~~~~~~g~~~aD-~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+|.... ..+...| ++++|||+.+.. ......|..+. .+.|+|+|+||+|+..
T Consensus 58 ~~~~~l-~~i~~~~~lIv~VVD~~D~~-~s~~~~L~~~~-~~kpviLViNK~DLl~ 110 (365)
T PRK13796 58 DFLKLL-NGIGDSDALVVNVVDIFDFN-GSWIPGLHRFV-GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHHHHH-HhhcccCcEEEEEEECccCC-CchhHHHHHHh-CCCCEEEEEEchhhCC
Confidence 465543 3444455 999999998733 22222232222 2789999999999963
No 476
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.19 E-value=0.028 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+++|+|++|+|||||+..|....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999997644
No 477
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.021 Score=60.30 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+--+++|+|++|+|||||+.+|-+-
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~L 55 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLL 55 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhcc
Confidence 4556899999999999999998643
No 478
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.14 E-value=0.076 Score=55.21 Aligned_cols=65 Identities=12% Similarity=-0.060 Sum_probs=38.0
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHH----hcCCc-eEEEeccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLK----ERSVD-FIIALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~----~~~vP-iIvvlNKiDl 424 (657)
.|.++||||||..... .+...+..+|.+|+++..+......+...+..+. ..+++ +.||+|+++.
T Consensus 115 ~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 4789999999864211 1123467899999987654321122222333222 23566 4578899875
No 479
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.12 E-value=0.012 Score=59.24 Aligned_cols=26 Identities=31% Similarity=0.741 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+--+|+|||++||||||||.+|.+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44568999999999999999998754
No 480
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.08 E-value=0.039 Score=60.88 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC--------CchhHHHHHHHHHh-------cCCceEEEeccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG--------IKPQTIESLDLLKE-------RSVDFIIALSKA 422 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g--------~~~qt~e~l~~l~~-------~~vPiIvvlNKi 422 (657)
....+.|+|+.|+..-..-|...+..++++|+||+.++- ......+.|.+... .++|+|+++||+
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 445689999999988888888888999999999998641 12223344443322 268999999999
Q ss_pred cccc
Q 036359 423 DKLY 426 (657)
Q Consensus 423 Dl~~ 426 (657)
|+..
T Consensus 314 D~f~ 317 (389)
T PF00503_consen 314 DLFE 317 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 481
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=0.061 Score=59.56 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=68.8
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCccccc-----------ccCceeeeccceeeecccccchhhcc---ccc----
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEG-----------EAGGITQQIGATYFPVENIQKRTEKL---NAD---- 354 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~-----------~~~GiT~~ig~~~~~~~~~~~~~~~~---~~~---- 354 (657)
.+-|+.+|+|||-.|+||||-|..|.....++. +.|.|-| +....-.+....+..+.+ .|+
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQ-LrtHv~rl~~l~~~~v~lfekGYgkd~a 452 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQ-LRTHVERLSALHGTMVELFEKGYGKDAA 452 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHH-HHHHHHHHHHhccchhHHHhhhcCCChH
Confidence 334888899999999999999988864322211 1111100 000000000000000001 011
Q ss_pred ---------cccCCCcEEEEeCCC--CCcchhhhh----cCCCCCceeeEeecccCCCc--hhHHHHHHHHHhcCCc---
Q 036359 355 ---------AKLKVPGLLVVDTPG--HESFTNLRS----WGPGLCDIAILVVDIMDGIK--PQTIESLDLLKERSVD--- 414 (657)
Q Consensus 355 ---------~~~~~~~l~iIDTPG--h~~f~~~~~----~g~~~aD~aIlVVDa~~g~~--~qt~e~l~~l~~~~vP--- 414 (657)
...+++.+.+|||.| |.+-.-|+. .-+..+|.+|+|=.|--|-. .|....-..+.....|
T Consensus 453 ~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~i 532 (587)
T KOG0781|consen 453 GVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLI 532 (587)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCcccc
Confidence 123456799999999 444332221 23467899999976655432 2222222334444445
Q ss_pred eEEEeccccccc
Q 036359 415 FIIALSKADKLY 426 (657)
Q Consensus 415 iIvvlNKiDl~~ 426 (657)
=-|+++|+|.+.
T Consensus 533 d~~~ltk~dtv~ 544 (587)
T KOG0781|consen 533 DGILLTKFDTVD 544 (587)
T ss_pred ceEEEEeccchh
Confidence 247889999863
No 482
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.93 E-value=0.014 Score=59.41 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV 322 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v 322 (657)
+.-+|+|+|++|||||||++.|-+-..
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 444699999999999999999987543
No 483
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=94.92 E-value=0.034 Score=66.24 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=44.4
Q ss_pred EecCCCChhhhhhhhcCCcccccccCc---eeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-------
Q 036359 303 LGHVDAGKTRLLDCIRGTNVQEGEAGG---ITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES------- 372 (657)
Q Consensus 303 iG~vdsGKSTLl~~L~~~~v~~~~~~G---iT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~------- 372 (657)
+|.-.+|||||||+|+|+++..-...| .|..+-....... ......++++|+-|...
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~-------------~~~~~~~~v~d~eg~d~~er~~~~ 67 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEV-------------ESSESNILVLDVEGTDGRERGEDQ 67 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhcccc-------------ccCCCceEEEeCCCCCchhhcccc
Confidence 589999999999999999987543322 2322211111110 01123589999988532
Q ss_pred -ch-hhhhcCCCCCceeeEee
Q 036359 373 -FT-NLRSWGPGLCDIAILVV 391 (657)
Q Consensus 373 -f~-~~~~~g~~~aD~aIlVV 391 (657)
|- ....-.+..+|++|+=+
T Consensus 68 ~fe~~~alf~la~s~~~iiN~ 88 (742)
T PF05879_consen 68 DFERKSALFALAVSDVLIINM 88 (742)
T ss_pred chHHHHHHHHHHhhhheeeeh
Confidence 32 12233456678777655
No 484
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.88 E-value=0.038 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
++++|+|..||||||||.+|+..
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHH
Confidence 67999999999999999999753
No 485
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.66 E-value=0.01 Score=57.80 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=17.9
Q ss_pred EEEEecCCCChhhhhhhhcCC
Q 036359 300 CCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~ 320 (657)
|.|.|.+|+|||||+..++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999998744
No 486
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.63 E-value=0.022 Score=52.62 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV 322 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v 322 (657)
.-+++|+|+.|+|||||++.|.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 34689999999999999999998653
No 487
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=94.59 E-value=0.056 Score=58.42 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=51.9
Q ss_pred cccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCC--------chhHHHHHHHHH---h----cCCceEEEe
Q 036359 355 AKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI--------KPQTIESLDLLK---E----RSVDFIIAL 419 (657)
Q Consensus 355 ~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~--------~~qt~e~l~~l~---~----~~vPiIvvl 419 (657)
+.++...+.++|++|+..-..-|......++++|+||+.++-- ...-.+++.++. . .+++||+++
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 4456667999999999887788888889999999999987621 112223333322 2 257899999
Q ss_pred cccccc
Q 036359 420 SKADKL 425 (657)
Q Consensus 420 NKiDl~ 425 (657)
||+|+.
T Consensus 270 NK~DLF 275 (354)
T KOG0082|consen 270 NKKDLF 275 (354)
T ss_pred ecHHHH
Confidence 999986
No 488
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=94.58 E-value=0.19 Score=56.18 Aligned_cols=68 Identities=19% Similarity=0.329 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 036359 100 AEIDRRNHAIQKRLR-EKGEQKRQEELDRQAEEAKLRKKEKEKEKKQKAKQREQQRQLESRRNQLQANA 167 (657)
Q Consensus 100 ~~~~~~~~~e~~~~~-~eee~~~~ee~~~~~e~~~~~~~~~~~~~~~~~k~~~e~~~~e~~~~~~~~~~ 167 (657)
+..+.+++++++++. +|+.|++.+|+.|+.+.++.++.+.++.|.+++|++.+++..|..+....+.+
T Consensus 210 eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ke~e~~~~k~~q~~ 278 (591)
T KOG2412|consen 210 EQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEVQDP 278 (591)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344444444443333 45555555555555555555666666666666666666666665554444443
No 489
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=0.22 Score=57.63 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=6.2
Q ss_pred eEEEeccccc
Q 036359 415 FIIALSKADK 424 (657)
Q Consensus 415 iIvvlNKiDl 424 (657)
+|.|+-|-+.
T Consensus 837 ~I~Vlekqem 846 (1118)
T KOG1029|consen 837 TITVLEKQEM 846 (1118)
T ss_pred eeeeehhccc
Confidence 5666666665
No 490
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.56 E-value=0.052 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
++|+|+|++|+|||||+.+|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 491
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.55 E-value=0.025 Score=55.53 Aligned_cols=28 Identities=39% Similarity=0.561 Sum_probs=23.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ 323 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~ 323 (657)
.--+|+|+|++|+|||||+|.|.|-..+
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCC
Confidence 3445999999999999999999886544
No 492
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.09 Score=51.82 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+-..++|.|++|+|||||+.+|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999998654
No 493
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.021 Score=56.92 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=67.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCC-C--CCcch
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTP-G--HESFT 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTP-G--h~~f~ 374 (657)
|.|.+.|++||||||+.+.|...--+... -+.+.+..+. .+.++|-. | |+.|.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~---~vi~l~kdy~---------------------~~i~~DEslpi~ke~yr 57 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW---RVIHLEKDYL---------------------RGILWDESLPILKEVYR 57 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh---hccccchhhh---------------------hheecccccchHHHHHH
Confidence 56889999999999999988643211110 1122222110 02333422 1 22222
Q ss_pred ----hhhhcC-CCCCceeeEeecccCCCchhHHHHHHHHHhcCCc--eEEEecccccccCcccCCCccHH
Q 036359 375 ----NLRSWG-PGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD--FIIALSKADKLYGWKSCKNAPIK 437 (657)
Q Consensus 375 ----~~~~~g-~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP--iIvvlNKiDl~~~w~~~~~~~~~ 437 (657)
....+. .+..+.-++++|..+-....-.+....++.++++ +|-+..-.|.+-.|...++.++.
T Consensus 58 es~~ks~~rlldSalkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip 127 (261)
T COG4088 58 ESFLKSVERLLDSALKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIP 127 (261)
T ss_pred HHHHHHHHHHHHHHhcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCC
Confidence 111111 1334455677888876666677777788888888 56666777888788877777764
No 494
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.43 E-value=0.022 Score=59.19 Aligned_cols=26 Identities=38% Similarity=0.670 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|+.|||||||+.+|.+..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45679999999999999999999854
No 495
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.43 E-value=0.025 Score=51.03 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|.|.+|||||||+..|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 496
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=0.47 Score=55.04 Aligned_cols=8 Identities=63% Similarity=1.244 Sum_probs=4.0
Q ss_pred ecCCCEEE
Q 036359 531 LHEGDKIV 538 (657)
Q Consensus 531 Lk~Gd~I~ 538 (657)
++.||.|+
T Consensus 925 ~~egd~iL 932 (1118)
T KOG1029|consen 925 FHEGDEIL 932 (1118)
T ss_pred ccccceEE
Confidence 45555544
No 497
>PRK11519 tyrosine kinase; Provisional
Probab=94.37 E-value=0.08 Score=63.15 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=49.6
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceE-EEecccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFI-IALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiI-vvlNKiDl~ 425 (657)
.|.++|||||......... .....+|++|+|+-...-...+....+..+...+++++ +|+|+++..
T Consensus 635 ~yD~ViiDtpP~~~v~Da~-~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 635 NYDLVLIDTPPILAVTDAA-IVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred cCCEEEEeCCCcccchHHH-HHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4679999999765433222 23477899999998776566667777888888999965 899999753
No 498
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.15 Score=57.48 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=70.0
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEecC
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQG 581 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~g 581 (657)
-...+..+|..++.|.++.+.|.+|+++.|..+.- +| ++.-..+-+|.|+..++.++..+. -+.|.+.|
T Consensus 414 g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~-----~r---d~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~ 485 (509)
T COG0532 414 GLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRV-----VR---DGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN 485 (509)
T ss_pred cceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEE-----Ee---CCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC
Confidence 35678899999999999999999999999998871 00 122223568999999988887653 48899999
Q ss_pred CCCCCCCCeEEEcCCCccHH
Q 036359 582 LQDAIAGTSLYVVGPNDDLE 601 (657)
Q Consensus 582 l~~~~aG~~l~v~~~~~~~~ 601 (657)
.+++..||.|+++.+.+..+
T Consensus 486 ~~di~~gD~le~~~~~~~~r 505 (509)
T COG0532 486 YRDIKEGDILEVFEPVEVKR 505 (509)
T ss_pred cccCCCCCEEEEEEEEeech
Confidence 99999999999987755433
No 499
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.03 E-value=0.088 Score=52.38 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=0.0
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKAD 423 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiD 423 (657)
+.++|||||. ..........+..+|.+|+|++....-.......+..+...+++ +-+|+|++|
T Consensus 128 yD~ViiD~pp-~~~~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~ 191 (204)
T TIGR01007 128 FDYIIIDTPP-IGTVTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVD 191 (204)
T ss_pred CCEEEEeCCC-ccccchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcc
No 500
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=94.02 E-value=0.17 Score=52.70 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhc---------------------------------------------CCcccccccCc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIR---------------------------------------------GTNVQEGEAGG 329 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~---------------------------------------------~~~v~~~~~~G 329 (657)
..+.++++-|--|+||||+.-.|. ..++..-.-+.
T Consensus 46 vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gf 125 (300)
T KOG3022|consen 46 VKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGF 125 (300)
T ss_pred cceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeee
Q ss_pred eeee-ccceeeecccccchhhccccccccCCCcEEEEeCC-CCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHH
Q 036359 330 ITQQ-IGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTP-GHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDL 407 (657)
Q Consensus 330 iT~~-ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTP-Gh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~ 407 (657)
+... -....+.-.........+-.+..+....|++|||| |..+-.-.....+...|++|+|--...--.......+..
T Consensus 126 Ll~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~f 205 (300)
T KOG3022|consen 126 LLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDF 205 (300)
T ss_pred ecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhh
Q ss_pred HHhcCCceEEEe
Q 036359 408 LKERSVDFIIAL 419 (657)
Q Consensus 408 l~~~~vPiIvvl 419 (657)
++..++|++=++
T Consensus 206 c~K~~I~ilGvV 217 (300)
T KOG3022|consen 206 CRKAGIPILGVV 217 (300)
T ss_pred hhhcCCceEEEE
Done!