Query 036359
Match_columns 657
No_of_seqs 582 out of 3685
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g7s_A Translation initiation 100.0 2.5E-49 8.5E-54 451.1 29.1 347 294-656 2-373 (594)
2 1zo1_I IF2, translation initia 100.0 8.6E-45 2.9E-49 405.0 7.4 301 295-656 2-324 (501)
3 3izy_P Translation initiation 100.0 2E-42 6.7E-47 388.9 3.6 300 295-655 2-361 (537)
4 3j2k_7 ERF3, eukaryotic polype 100.0 3.3E-33 1.1E-37 308.6 22.7 240 297-593 17-325 (439)
5 1d2e_A Elongation factor TU (E 100.0 3.5E-32 1.2E-36 296.7 22.4 240 298-593 4-288 (397)
6 3mca_A HBS1, elongation factor 100.0 9.7E-33 3.3E-37 315.1 18.6 240 297-594 177-488 (592)
7 2c78_A Elongation factor TU-A; 100.0 7.4E-32 2.5E-36 294.8 21.7 242 297-593 11-306 (405)
8 1f60_A Elongation factor EEF1A 100.0 8.3E-32 2.9E-36 299.0 20.2 241 297-594 7-327 (458)
9 1r5b_A Eukaryotic peptide chai 100.0 7E-32 2.4E-36 300.3 19.1 240 298-594 44-355 (467)
10 1wb1_A Translation elongation 100.0 2.8E-32 9.7E-37 304.4 13.6 237 295-592 17-281 (482)
11 1jny_A EF-1-alpha, elongation 100.0 7E-31 2.4E-35 289.8 21.9 241 298-594 7-316 (435)
12 3izq_1 HBS1P, elongation facto 100.0 1.2E-30 4E-35 298.8 22.2 242 296-594 166-495 (611)
13 3p26_A Elongation factor 1 alp 100.0 1.7E-30 5.7E-35 290.4 21.6 241 297-594 33-361 (483)
14 2elf_A Protein translation elo 100.0 2.8E-30 9.5E-35 279.1 21.9 224 299-593 23-275 (370)
15 3avx_A Elongation factor TS, e 100.0 2.1E-30 7.1E-35 307.3 22.4 242 296-593 295-579 (1289)
16 3vqt_A RF-3, peptide chain rel 100.0 6E-30 2.1E-34 289.5 22.3 263 292-594 28-399 (548)
17 1kk1_A EIF2gamma; initiation o 100.0 6.4E-30 2.2E-34 279.9 21.3 260 298-593 11-314 (410)
18 1s0u_A EIF-2-gamma, translatio 100.0 3E-30 1E-34 282.4 18.2 262 297-592 8-311 (408)
19 1zun_B Sulfate adenylate trans 100.0 7.7E-30 2.6E-34 281.3 19.8 242 298-596 25-327 (434)
20 3sjy_A Translation initiation 100.0 9.3E-29 3.2E-33 270.1 22.9 261 295-594 6-307 (403)
21 4fn5_A EF-G 1, elongation fact 100.0 2.1E-28 7.2E-33 285.2 20.4 274 293-595 11-404 (709)
22 2ywe_A GTP-binding protein LEP 100.0 9.3E-28 3.2E-32 273.1 20.8 240 294-596 5-281 (600)
23 3j25_A Tetracycline resistance 100.0 3.2E-29 1.1E-33 288.7 6.2 220 294-538 1-281 (638)
24 3tr5_A RF-3, peptide chain rel 99.9 2.7E-27 9.3E-32 266.6 20.1 259 294-593 12-380 (528)
25 2rdo_7 EF-G, elongation factor 99.9 3.7E-26 1.3E-30 265.6 26.4 270 294-593 9-399 (704)
26 3cb4_D GTP-binding protein LEP 99.9 5.4E-27 1.8E-31 267.1 18.7 240 294-596 3-279 (599)
27 1dar_A EF-G, elongation factor 99.9 1.1E-25 3.6E-30 261.5 23.5 265 295-595 12-393 (691)
28 2dy1_A Elongation factor G; tr 99.9 1.6E-25 5.5E-30 259.0 24.4 259 298-594 10-365 (665)
29 2h5e_A Peptide chain release f 99.9 1.3E-25 4.3E-30 253.1 22.9 256 299-593 15-381 (529)
30 2xex_A Elongation factor G; GT 99.9 3E-24 1E-28 249.4 22.1 263 299-595 12-393 (693)
31 1n0u_A EF-2, elongation factor 99.9 8.5E-22 2.9E-26 233.2 20.5 130 294-425 18-163 (842)
32 2lkc_A Translation initiation 99.8 7.7E-21 2.6E-25 180.9 11.9 159 295-501 6-164 (178)
33 4dhe_A Probable GTP-binding pr 99.8 1.6E-18 5.5E-23 171.7 13.7 163 295-501 27-204 (223)
34 3iev_A GTP-binding protein ERA 99.8 6.9E-19 2.4E-23 185.3 10.5 156 295-501 8-175 (308)
35 1wf3_A GTP-binding protein; GT 99.8 2E-18 6.8E-23 181.3 13.9 115 295-425 5-130 (301)
36 4bas_A ADP-ribosylation factor 99.7 5.9E-18 2E-22 164.0 12.6 117 292-426 12-141 (199)
37 3iby_A Ferrous iron transport 99.7 3.8E-18 1.3E-22 175.1 10.3 111 298-426 2-124 (256)
38 2efe_B Small GTP-binding prote 99.7 6.5E-18 2.2E-22 161.0 10.8 117 296-426 11-131 (181)
39 3clv_A RAB5 protein, putative; 99.7 1E-17 3.6E-22 161.7 11.5 167 296-501 6-197 (208)
40 3i8s_A Ferrous iron transport 99.7 6.1E-18 2.1E-22 175.1 10.4 113 296-426 2-126 (274)
41 2bme_A RAB4A, RAS-related prot 99.7 1.4E-17 4.6E-22 159.7 11.9 117 296-426 9-129 (186)
42 1svi_A GTP-binding protein YSX 99.7 9E-18 3.1E-22 162.4 10.6 153 295-501 21-188 (195)
43 1ega_A Protein (GTP-binding pr 99.7 1.2E-17 4.2E-22 175.2 12.2 114 295-425 6-129 (301)
44 3tw8_B RAS-related protein RAB 99.7 1.1E-17 3.8E-22 158.9 10.7 116 297-426 9-127 (181)
45 1upt_A ARL1, ADP-ribosylation 99.7 9.9E-18 3.4E-22 158.0 10.2 152 296-501 6-162 (171)
46 3pqc_A Probable GTP-binding pr 99.7 1.2E-17 4.2E-22 160.8 10.9 153 295-501 21-187 (195)
47 1z08_A RAS-related protein RAB 99.7 2E-17 6.7E-22 155.8 11.8 116 297-426 6-125 (170)
48 1r2q_A RAS-related protein RAB 99.7 1.5E-17 5.1E-22 156.2 10.5 117 296-426 5-125 (170)
49 2h17_A ADP-ribosylation factor 99.7 1.3E-17 4.4E-22 160.2 10.1 155 293-501 17-176 (181)
50 3k53_A Ferrous iron transport 99.7 5.7E-18 1.9E-22 174.7 8.1 112 296-425 2-122 (271)
51 2dyk_A GTP-binding protein; GT 99.7 5.1E-18 1.7E-22 158.4 6.9 113 298-426 2-122 (161)
52 1ek0_A Protein (GTP-binding pr 99.7 2E-17 6.9E-22 155.2 11.0 116 297-426 3-122 (170)
53 2h57_A ADP-ribosylation factor 99.7 1.4E-17 5E-22 160.9 10.2 154 295-501 19-180 (190)
54 1z0f_A RAB14, member RAS oncog 99.7 1.3E-17 4.6E-22 158.0 9.6 116 297-426 15-134 (179)
55 2y8e_A RAB-protein 6, GH09086P 99.7 1.6E-17 5.6E-22 157.4 10.0 118 295-426 12-133 (179)
56 1wms_A RAB-9, RAB9, RAS-relate 99.7 3.2E-17 1.1E-21 155.6 11.7 115 297-425 7-129 (177)
57 2hxs_A RAB-26, RAS-related pro 99.7 1.5E-17 5E-22 158.1 9.1 118 296-426 5-129 (178)
58 2gf9_A RAS-related protein RAB 99.7 3E-17 1E-21 158.5 11.5 116 297-426 22-141 (189)
59 2fu5_C RAS-related protein RAB 99.7 1.5E-17 5.1E-22 159.2 9.2 115 298-426 9-127 (183)
60 1z2a_A RAS-related protein RAB 99.7 1.8E-17 6.3E-22 155.4 9.5 116 297-426 5-123 (168)
61 1kao_A RAP2A; GTP-binding prot 99.7 2.3E-17 7.8E-22 154.1 10.0 116 296-426 2-122 (167)
62 1r8s_A ADP-ribosylation factor 99.7 2.2E-17 7.5E-22 154.8 9.8 149 299-501 2-155 (164)
63 3bc1_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 156.6 11.9 126 296-426 10-141 (195)
64 3tkl_A RAS-related protein RAB 99.7 2.4E-17 8.3E-22 159.3 10.2 116 297-426 16-135 (196)
65 2oil_A CATX-8, RAS-related pro 99.7 2.9E-17 9.8E-22 159.0 10.6 117 296-426 24-144 (193)
66 2bcg_Y Protein YP2, GTP-bindin 99.7 3.3E-17 1.1E-21 160.4 11.1 116 297-426 8-127 (206)
67 1zbd_A Rabphilin-3A; G protein 99.7 4.4E-17 1.5E-21 159.0 11.9 115 298-426 9-127 (203)
68 3t5g_A GTP-binding protein RHE 99.7 4.4E-17 1.5E-21 155.6 11.6 113 296-426 5-125 (181)
69 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.3E-17 7.8E-22 157.7 9.6 116 296-426 4-123 (186)
70 2il1_A RAB12; G-protein, GDP, 99.7 1.6E-17 5.6E-22 161.4 8.5 116 297-426 26-145 (192)
71 1vg8_A RAS-related protein RAB 99.7 3.6E-17 1.2E-21 159.7 10.9 116 296-425 7-130 (207)
72 3llu_A RAS-related GTP-binding 99.7 1.8E-16 6.3E-21 154.4 15.8 164 294-500 17-189 (196)
73 1moz_A ARL1, ADP-ribosylation 99.7 2.8E-17 9.5E-22 157.1 9.7 152 296-501 17-173 (183)
74 1g16_A RAS-related protein SEC 99.7 1.8E-17 6.2E-22 155.8 8.3 114 298-425 4-121 (170)
75 2fg5_A RAB-22B, RAS-related pr 99.7 4.2E-17 1.4E-21 158.2 11.1 115 296-426 22-142 (192)
76 2hjg_A GTP-binding protein ENG 99.7 1.1E-17 3.8E-22 184.3 7.8 157 296-501 174-342 (436)
77 1c1y_A RAS-related protein RAP 99.7 3.4E-17 1.2E-21 153.5 10.0 116 296-426 2-122 (167)
78 1ky3_A GTP-binding protein YPT 99.7 2.8E-17 9.6E-22 156.2 9.5 117 296-425 7-131 (182)
79 2g6b_A RAS-related protein RAB 99.7 5.3E-17 1.8E-21 154.5 11.3 117 296-426 9-130 (180)
80 3a1s_A Iron(II) transport prot 99.7 2.9E-17 9.9E-22 168.7 10.1 112 296-425 4-123 (258)
81 2wji_A Ferrous iron transport 99.7 3.8E-17 1.3E-21 154.8 10.2 111 297-425 3-121 (165)
82 2ew1_A RAS-related protein RAB 99.7 5.8E-17 2E-21 159.6 11.6 117 296-426 25-145 (201)
83 1z06_A RAS-related protein RAB 99.7 3.2E-17 1.1E-21 158.3 9.4 120 293-426 16-141 (189)
84 2fh5_B SR-beta, signal recogni 99.7 5.6E-17 1.9E-21 159.7 11.3 114 296-426 6-129 (214)
85 3kkq_A RAS-related protein M-R 99.7 3.9E-17 1.3E-21 156.3 9.7 118 294-426 15-137 (183)
86 3t1o_A Gliding protein MGLA; G 99.7 2.9E-17 9.8E-22 158.3 8.8 158 296-501 13-185 (198)
87 2fn4_A P23, RAS-related protei 99.7 5.2E-17 1.8E-21 154.3 10.4 117 295-426 7-128 (181)
88 1z0j_A RAB-22, RAS-related pro 99.7 5.6E-17 1.9E-21 152.4 10.5 117 296-426 5-125 (170)
89 1zj6_A ADP-ribosylation factor 99.7 5.7E-17 2E-21 156.3 10.7 152 296-501 15-171 (187)
90 2x77_A ADP-ribosylation factor 99.7 5.1E-17 1.7E-21 156.7 10.3 112 296-426 21-137 (189)
91 3cph_A RAS-related protein SEC 99.7 3.9E-17 1.3E-21 160.1 9.4 116 296-425 19-138 (213)
92 2qu8_A Putative nucleolar GTP- 99.7 8.5E-17 2.9E-21 160.8 12.0 115 295-426 27-156 (228)
93 2a5j_A RAS-related protein RAB 99.7 3.1E-17 1.1E-21 158.9 8.5 117 296-426 20-140 (191)
94 1ksh_A ARF-like protein 2; sma 99.7 4.5E-17 1.6E-21 156.5 9.5 152 296-501 17-173 (186)
95 1u8z_A RAS-related protein RAL 99.7 6.8E-17 2.3E-21 151.1 10.4 115 297-426 4-123 (168)
96 1x3s_A RAS-related protein RAB 99.7 4.9E-17 1.7E-21 156.8 9.6 116 296-425 14-134 (195)
97 2hup_A RAS-related protein RAB 99.7 5.5E-17 1.9E-21 159.1 10.0 117 296-426 28-148 (201)
98 2gco_A H9, RHO-related GTP-bin 99.7 5.2E-17 1.8E-21 158.9 9.8 116 296-426 24-143 (201)
99 3oes_A GTPase rhebl1; small GT 99.7 2.1E-16 7.3E-21 154.4 13.6 117 295-426 22-143 (201)
100 1fzq_A ADP-ribosylation factor 99.7 8.3E-17 2.8E-21 155.0 10.4 152 296-501 15-171 (181)
101 2nzj_A GTP-binding protein REM 99.7 1.5E-16 5.1E-21 150.4 11.9 114 297-426 4-125 (175)
102 2a9k_A RAS-related protein RAL 99.7 9.9E-17 3.4E-21 153.1 10.7 117 295-426 16-137 (187)
103 2o52_A RAS-related protein RAB 99.7 4.6E-17 1.6E-21 159.4 8.4 116 297-426 25-144 (200)
104 1zd9_A ADP-ribosylation factor 99.7 4.4E-17 1.5E-21 157.6 8.1 153 296-501 21-178 (188)
105 4gzl_A RAS-related C3 botulinu 99.7 6.5E-17 2.2E-21 158.9 9.3 117 295-426 28-148 (204)
106 2f7s_A C25KG, RAS-related prot 99.7 3.2E-17 1.1E-21 161.8 7.1 124 296-426 24-155 (217)
107 2bov_A RAla, RAS-related prote 99.7 1.1E-16 3.6E-21 156.0 10.6 117 295-426 12-133 (206)
108 3cpj_B GTP-binding protein YPT 99.7 1.1E-16 3.6E-21 159.5 10.7 116 297-426 13-132 (223)
109 2p5s_A RAS and EF-hand domain 99.7 6.4E-17 2.2E-21 157.9 8.9 117 295-425 26-146 (199)
110 3qq5_A Small GTP-binding prote 99.7 5.2E-17 1.8E-21 178.0 9.0 113 297-426 34-154 (423)
111 2fv8_A H6, RHO-related GTP-bin 99.7 9.3E-17 3.2E-21 157.8 9.6 117 295-426 23-143 (207)
112 2erx_A GTP-binding protein DI- 99.7 1.4E-16 4.7E-21 149.8 10.3 114 298-426 4-123 (172)
113 2wjg_A FEOB, ferrous iron tran 99.7 3.3E-17 1.1E-21 157.5 6.1 114 295-426 5-126 (188)
114 2yc2_C IFT27, small RAB-relate 99.7 8.5E-17 2.9E-21 156.7 9.1 118 296-425 19-145 (208)
115 3bwd_D RAC-like GTP-binding pr 99.7 1.3E-16 4.3E-21 152.2 10.0 117 295-426 6-126 (182)
116 3b1v_A Ferrous iron uptake tra 99.7 1.1E-16 3.6E-21 165.8 10.1 110 298-426 4-121 (272)
117 2b6h_A ADP-ribosylation factor 99.7 6.9E-17 2.3E-21 157.2 8.2 153 295-501 27-184 (192)
118 4dcu_A GTP-binding protein ENG 99.7 8.3E-17 2.9E-21 178.3 9.8 157 296-501 194-362 (456)
119 3l0i_B RAS-related protein RAB 99.7 4.8E-17 1.6E-21 158.8 6.9 116 297-426 33-152 (199)
120 3q72_A GTP-binding protein RAD 99.7 3.5E-16 1.2E-20 146.8 12.4 109 298-426 3-120 (166)
121 3reg_A RHO-like small GTPase; 99.7 2.4E-16 8.3E-21 152.8 11.5 113 296-426 22-141 (194)
122 1f6b_A SAR1; gtpases, N-termin 99.7 3E-16 1E-20 153.6 12.2 112 295-425 23-139 (198)
123 3con_A GTPase NRAS; structural 99.7 2.3E-16 7.7E-21 152.1 11.2 119 293-426 17-140 (190)
124 4dkx_A RAS-related protein RAB 99.7 2.6E-16 8.7E-21 157.5 11.7 152 295-501 11-169 (216)
125 1mky_A Probable GTP-binding pr 99.7 2E-16 6.8E-21 174.4 11.7 112 298-425 2-123 (439)
126 1m2o_B GTP-binding protein SAR 99.7 2.2E-16 7.5E-21 153.4 10.6 111 296-425 22-137 (190)
127 4djt_A GTP-binding nuclear pro 99.7 8E-17 2.7E-21 159.1 7.6 118 296-426 10-131 (218)
128 2ce2_X GTPase HRAS; signaling 99.7 2.2E-16 7.6E-21 147.0 10.2 115 297-426 3-122 (166)
129 2atx_A Small GTP binding prote 99.7 3.2E-16 1.1E-20 151.8 11.5 115 297-426 18-136 (194)
130 3q85_A GTP-binding protein REM 99.7 1.8E-16 6.3E-21 149.2 9.5 114 299-426 4-123 (169)
131 4dsu_A GTPase KRAS, isoform 2B 99.7 1.8E-16 6.1E-21 151.8 9.4 114 297-425 4-122 (189)
132 2q3h_A RAS homolog gene family 99.7 5.2E-16 1.8E-20 151.1 12.8 117 295-426 18-138 (201)
133 3dz8_A RAS-related protein RAB 99.7 5.3E-17 1.8E-21 157.2 5.6 116 297-426 23-142 (191)
134 2j1l_A RHO-related GTP-binding 99.6 2.1E-16 7E-21 156.5 9.5 114 295-426 32-152 (214)
135 2j0v_A RAC-like GTP-binding pr 99.6 2.3E-16 7.9E-21 155.1 9.8 113 296-426 8-127 (212)
136 2xtp_A GTPase IMAP family memb 99.6 2.9E-16 9.8E-21 160.3 10.6 114 295-425 20-152 (260)
137 3gj0_A GTP-binding nuclear pro 99.6 1.1E-16 3.6E-21 158.9 7.0 116 295-426 13-133 (221)
138 3o47_A ADP-ribosylation factor 99.6 1.3E-16 4.4E-21 169.5 7.7 152 296-501 164-320 (329)
139 2gf0_A GTP-binding protein DI- 99.6 2.7E-16 9.2E-21 152.3 9.3 116 296-426 7-128 (199)
140 3q3j_B RHO-related GTP-binding 99.6 7.8E-16 2.7E-20 152.6 12.7 117 295-426 25-145 (214)
141 2gj8_A MNME, tRNA modification 99.6 3.4E-16 1.1E-20 149.8 9.2 112 298-425 5-128 (172)
142 2hjg_A GTP-binding protein ENG 99.6 5.5E-17 1.9E-21 178.7 4.3 114 297-426 3-125 (436)
143 1m7b_A RND3/RHOE small GTP-bin 99.6 1.1E-15 3.9E-20 146.9 12.5 113 296-426 6-125 (184)
144 3c5c_A RAS-like protein 12; GD 99.6 1.9E-15 6.5E-20 146.2 12.6 116 295-426 19-141 (187)
145 4dcu_A GTP-binding protein ENG 99.6 1.5E-16 5.3E-21 176.1 5.4 117 293-425 19-144 (456)
146 3ihw_A Centg3; RAS, centaurin, 99.6 1.4E-15 4.7E-20 147.1 10.2 110 293-425 16-132 (184)
147 2cxx_A Probable GTP-binding pr 99.6 8.3E-16 2.8E-20 147.5 8.6 109 298-426 2-136 (190)
148 3cbq_A GTP-binding protein REM 99.6 1.3E-15 4.5E-20 148.8 10.0 114 296-426 22-144 (195)
149 3gee_A MNME, tRNA modification 99.6 8.4E-16 2.9E-20 170.9 9.7 146 298-502 234-392 (476)
150 1gwn_A RHO-related GTP-binding 99.6 3.1E-15 1.1E-19 147.5 11.9 113 296-426 27-146 (205)
151 2atv_A RERG, RAS-like estrogen 99.6 3E-15 1E-19 145.5 11.2 115 296-426 27-146 (196)
152 3t5d_A Septin-7; GTP-binding p 99.6 1.4E-15 4.6E-20 157.1 9.1 152 298-500 9-196 (274)
153 3r7w_A Gtpase1, GTP-binding pr 99.6 4.6E-15 1.6E-19 155.9 13.1 113 298-425 4-128 (307)
154 3th5_A RAS-related C3 botulinu 99.4 9.7E-17 3.3E-21 157.0 0.0 116 296-426 29-148 (204)
155 2iwr_A Centaurin gamma 1; ANK 99.6 3.8E-15 1.3E-19 141.8 10.5 110 295-425 5-121 (178)
156 3geh_A MNME, tRNA modification 99.6 2.5E-15 8.4E-20 166.6 9.1 111 298-426 225-344 (462)
157 2e87_A Hypothetical protein PH 99.6 1.4E-14 4.7E-19 155.4 14.5 116 295-426 165-294 (357)
158 1mky_A Probable GTP-binding pr 99.6 6.3E-15 2.2E-19 162.4 11.5 115 296-426 179-306 (439)
159 1nrj_B SR-beta, signal recogni 99.6 3.8E-15 1.3E-19 147.0 8.7 112 295-426 10-134 (218)
160 2wkq_A NPH1-1, RAS-related C3 99.5 7.5E-15 2.6E-19 153.9 10.0 116 296-426 154-273 (332)
161 3lvq_E ARF-GAP with SH3 domain 99.5 6E-15 2E-19 164.8 9.7 152 296-501 321-477 (497)
162 3lxw_A GTPase IMAP family memb 99.5 2E-14 7E-19 146.3 12.7 113 296-425 20-152 (247)
163 1xzp_A Probable tRNA modificat 99.5 3.7E-15 1.3E-19 166.0 7.7 110 298-425 244-363 (482)
164 2aka_B Dynamin-1; fusion prote 99.5 1.5E-14 5.1E-19 150.0 10.8 132 295-426 24-206 (299)
165 1pui_A ENGB, probable GTP-bind 99.5 4.1E-14 1.4E-18 138.5 13.0 112 296-426 25-151 (210)
166 2zej_A Dardarin, leucine-rich 99.5 1.1E-14 3.7E-19 140.4 7.8 117 298-425 3-125 (184)
167 3lxx_A GTPase IMAP family memb 99.5 2.3E-14 7.8E-19 144.4 10.0 114 296-426 28-159 (239)
168 3def_A T7I23.11 protein; chlor 99.5 3.8E-14 1.3E-18 145.3 11.3 115 295-425 34-164 (262)
169 2g3y_A GTP-binding protein GEM 99.5 1.1E-13 3.9E-18 137.6 13.5 113 297-426 37-159 (211)
170 1lnz_A SPO0B-associated GTP-bi 99.5 1.1E-14 3.8E-19 155.4 5.7 113 298-425 159-287 (342)
171 2ged_A SR-beta, signal recogni 99.5 2E-14 6.8E-19 138.7 5.8 110 295-426 46-170 (193)
172 2qtf_A Protein HFLX, GTP-bindi 99.5 1E-13 3.5E-18 149.2 11.9 112 298-426 180-306 (364)
173 3dpu_A RAB family protein; roc 99.5 3.7E-14 1.3E-18 160.1 8.7 124 295-426 39-164 (535)
174 2f9l_A RAB11B, member RAS onco 99.5 1.6E-13 5.5E-18 133.8 11.3 115 298-426 6-124 (199)
175 2cjw_A GTP-binding protein GEM 99.5 2.1E-13 7.2E-18 132.7 11.2 110 298-425 7-127 (192)
176 1jwy_B Dynamin A GTPase domain 99.5 9.9E-14 3.4E-18 145.2 9.4 67 360-426 131-212 (315)
177 1h65_A Chloroplast outer envel 99.4 3E-13 1E-17 139.2 12.4 115 296-426 38-168 (270)
178 3r7w_B Gtpase2, GTP-binding pr 99.4 3.1E-13 1E-17 142.8 12.1 110 300-426 2-120 (331)
179 1wxq_A GTP-binding protein; st 99.4 5.9E-13 2E-17 144.9 13.6 97 299-396 2-114 (397)
180 2qpt_A EH domain-containing pr 99.4 1.6E-13 5.6E-18 155.2 9.5 132 295-426 63-232 (550)
181 3c5h_A Glucocorticoid receptor 99.4 3.2E-13 1.1E-17 137.9 10.4 129 295-425 17-211 (255)
182 3t34_A Dynamin-related protein 99.4 4E-13 1.4E-17 144.1 10.6 68 359-426 135-217 (360)
183 2j69_A Bacterial dynamin-like 99.4 5.3E-13 1.8E-17 155.1 12.0 67 360-426 174-244 (695)
184 1oix_A RAS-related protein RAB 99.4 1E-12 3.5E-17 127.6 12.0 116 297-426 29-148 (191)
185 2qag_A Septin-2, protein NEDD5 99.4 3.2E-13 1.1E-17 145.2 8.1 117 297-426 37-188 (361)
186 2x2e_A Dynamin-1; nitration, h 99.4 6.6E-13 2.3E-17 142.1 9.9 132 295-426 29-211 (353)
187 3p32_A Probable GTPase RV1496/ 99.3 9.3E-13 3.2E-17 141.1 8.6 108 358-501 170-277 (355)
188 2wsm_A Hydrogenase expression/ 99.3 1.1E-12 3.9E-17 129.5 6.9 163 296-501 29-207 (221)
189 3zvr_A Dynamin-1; hydrolase, D 99.3 2.9E-12 9.8E-17 148.8 10.0 131 295-426 49-231 (772)
190 2p67_A LAO/AO transport system 99.3 1.9E-12 6.7E-17 137.9 7.4 61 358-425 147-207 (341)
191 1udx_A The GTP-binding protein 99.2 1.9E-11 6.4E-16 133.6 11.4 112 298-425 158-282 (416)
192 2www_A Methylmalonic aciduria 99.2 1.5E-11 5.2E-16 131.5 10.1 61 358-425 165-225 (349)
193 1yrb_A ATP(GTP)binding protein 99.2 2.7E-11 9.1E-16 123.0 10.1 66 360-426 109-185 (262)
194 2qag_C Septin-7; cell cycle, c 99.2 6.7E-11 2.3E-15 129.3 12.7 123 297-426 31-181 (418)
195 1jal_A YCHF protein; nucleotid 99.1 1.7E-10 5.9E-15 123.6 10.0 98 298-395 3-108 (363)
196 2qnr_A Septin-2, protein NEDD5 99.1 2.1E-10 7.2E-15 120.1 9.6 116 297-426 18-169 (301)
197 2dby_A GTP-binding protein; GD 99.0 3.4E-10 1.2E-14 121.8 9.5 96 299-395 3-111 (368)
198 2hf9_A Probable hydrogenase ni 99.0 1.2E-09 3.9E-14 108.2 11.2 163 296-501 37-217 (226)
199 4a9a_A Ribosome-interacting GT 99.0 1.5E-10 5E-15 124.8 4.4 111 297-425 72-195 (376)
200 2qag_B Septin-6, protein NEDD5 98.9 1.7E-09 5.8E-14 118.1 10.0 111 300-426 45-190 (427)
201 3h2y_A GTPase family protein; 98.9 2.4E-10 8.1E-15 123.1 -0.1 110 298-426 161-287 (368)
202 2qm8_A GTPase/ATPase; G protei 98.9 2.4E-09 8.2E-14 113.9 7.5 61 358-425 146-206 (337)
203 3sop_A Neuronal-specific septi 98.8 2.4E-08 8.2E-13 102.9 12.2 123 298-426 3-154 (270)
204 2j37_W Signal recognition part 98.8 1.1E-09 3.7E-14 122.3 2.0 66 358-426 182-254 (504)
205 3ec1_A YQEH GTPase; atnos1, at 98.8 9.5E-10 3.3E-14 118.4 0.4 110 298-426 163-288 (369)
206 3ohm_A Guanine nucleotide-bind 98.6 1.5E-07 5.1E-12 99.6 12.0 67 360-426 167-248 (327)
207 1u0l_A Probable GTPase ENGC; p 98.6 1.2E-07 4.1E-12 99.1 10.5 95 312-426 32-129 (301)
208 2ohf_A Protein OLA1, GTP-bindi 98.6 2E-08 6.9E-13 108.7 4.6 99 297-395 22-128 (396)
209 4fid_A G protein alpha subunit 98.6 1.1E-07 3.9E-12 100.9 9.2 67 359-425 160-241 (340)
210 1cip_A Protein (guanine nucleo 98.5 5E-07 1.7E-11 96.6 11.3 65 361-425 194-273 (353)
211 2v3c_C SRP54, signal recogniti 98.5 1.6E-07 5.3E-12 103.2 7.4 65 358-425 179-251 (432)
212 1tq4_A IIGP1, interferon-induc 98.4 1.3E-06 4.4E-11 95.2 12.6 116 296-425 68-188 (413)
213 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 1.8E-07 6.1E-12 101.3 5.3 99 296-395 19-127 (392)
214 3l82_B F-box only protein 4; T 98.3 6.5E-07 2.2E-11 88.4 6.3 171 296-502 15-217 (227)
215 1zcb_A G alpha I/13; GTP-bindi 98.3 1E-06 3.5E-11 94.5 8.3 66 360-425 201-281 (362)
216 3e1y_E Eukaryotic peptide chai 98.3 1E-06 3.5E-11 87.0 7.6 78 502-593 4-87 (204)
217 3dm5_A SRP54, signal recogniti 98.3 9.2E-07 3.2E-11 97.0 7.2 66 359-426 182-253 (443)
218 1f5n_A Interferon-induced guan 98.2 4.9E-07 1.7E-11 102.6 4.2 99 296-408 37-145 (592)
219 1j8m_F SRP54, signal recogniti 98.1 1.7E-06 5.9E-11 90.3 6.0 65 358-425 179-252 (297)
220 1puj_A YLQF, conserved hypothe 98.1 2E-06 6.9E-11 89.0 4.9 58 296-372 119-177 (282)
221 2yv5_A YJEQ protein; hydrolase 98.1 8.8E-06 3E-10 85.0 9.8 96 370-502 66-163 (302)
222 3kl4_A SRP54, signal recogniti 98.1 2.1E-06 7.2E-11 94.0 4.8 65 359-425 179-251 (433)
223 3szr_A Interferon-induced GTP- 98.0 8E-06 2.7E-10 93.4 8.6 29 295-323 43-71 (608)
224 2xxa_A Signal recognition part 97.9 9.2E-06 3.2E-10 89.1 6.6 65 358-425 182-253 (433)
225 1azs_C GS-alpha; complex (lyas 97.9 1E-05 3.5E-10 87.8 6.7 65 361-425 218-297 (402)
226 3cnl_A YLQF, putative uncharac 97.9 4.8E-06 1.6E-10 85.3 3.4 57 298-373 100-157 (262)
227 3l2o_B F-box only protein 4; s 97.9 1.4E-05 4.7E-10 82.6 6.7 171 295-501 99-301 (312)
228 1puj_A YLQF, conserved hypothe 97.8 2.5E-05 8.6E-10 80.8 6.9 61 364-426 3-64 (282)
229 2xtz_A Guanine nucleotide-bind 97.7 2.3E-05 7.8E-10 83.7 5.3 67 360-426 183-264 (354)
230 3e70_C DPA, signal recognition 97.7 2.1E-05 7.2E-10 83.1 4.7 126 295-425 127-281 (328)
231 2yhs_A FTSY, cell division pro 97.7 3.1E-05 1E-09 85.9 5.6 24 297-320 293-316 (503)
232 2ffh_A Protein (FFH); SRP54, s 97.7 3.2E-05 1.1E-09 84.4 5.5 65 358-425 179-250 (425)
233 1xe1_A Hypothetical protein PF 97.6 0.00031 1.1E-08 62.4 10.6 78 503-594 33-114 (116)
234 1z9b_A Translation initiation 97.6 1E-05 3.5E-10 74.1 0.4 38 619-656 24-64 (135)
235 3cnl_A YLQF, putative uncharac 97.6 5.2E-05 1.8E-09 77.5 5.0 55 368-426 5-60 (262)
236 1zu4_A FTSY; GTPase, signal re 97.5 0.00012 4E-09 77.1 7.8 65 358-425 190-267 (320)
237 1vma_A Cell division protein F 97.5 0.00011 3.7E-09 76.9 7.4 24 297-320 104-127 (306)
238 4dzz_A Plasmid partitioning pr 97.5 7.6E-05 2.6E-09 72.0 4.9 63 359-424 75-142 (206)
239 2px0_A Flagellar biosynthesis 97.5 9.7E-05 3.3E-09 76.9 5.7 126 296-425 104-252 (296)
240 3q5d_A Atlastin-1; G protein, 97.4 0.0001 3.4E-09 81.0 4.4 26 295-320 65-90 (447)
241 1rj9_A FTSY, signal recognitio 97.3 0.00031 1.1E-08 73.3 7.1 63 360-425 185-260 (304)
242 3ec1_A YQEH GTPase; atnos1, at 97.2 0.00016 5.4E-09 77.6 4.1 62 362-426 51-112 (369)
243 1ls1_A Signal recognition part 97.2 0.00018 6.1E-09 74.8 4.3 65 358-425 179-250 (295)
244 3h2y_A GTPase family protein; 97.0 0.00028 9.6E-09 75.6 3.5 62 362-426 49-110 (368)
245 1t9h_A YLOQ, probable GTPase E 96.9 0.0019 6.4E-08 67.5 8.3 48 379-426 82-131 (307)
246 3cwq_A Para family chromosome 96.8 0.00069 2.4E-08 66.4 4.0 65 359-425 67-133 (209)
247 3kjh_A CO dehydrogenase/acetyl 96.8 0.00038 1.3E-08 69.0 1.7 65 358-424 130-195 (254)
248 3b9q_A Chloroplast SRP recepto 96.8 0.0021 7E-08 67.0 7.3 63 360-425 184-259 (302)
249 1t9h_A YLOQ, probable GTPase E 96.7 0.00047 1.6E-08 72.1 2.4 26 296-321 172-197 (307)
250 3end_A Light-independent proto 96.6 0.0021 7.2E-08 66.4 6.4 66 358-424 155-225 (307)
251 2og2_A Putative signal recogni 96.6 0.0032 1.1E-07 67.2 7.6 63 360-425 241-316 (359)
252 2oze_A ORF delta'; para, walke 96.4 0.0043 1.5E-07 63.6 6.9 65 359-425 154-225 (298)
253 2yv5_A YJEQ protein; hydrolase 96.4 0.0027 9.2E-08 66.0 5.1 24 295-318 163-186 (302)
254 2rcn_A Probable GTPase ENGC; Y 96.3 0.0011 3.7E-08 70.8 1.8 27 296-322 214-240 (358)
255 2rcn_A Probable GTPase ENGC; Y 96.2 0.011 3.9E-07 62.9 8.8 47 380-426 127-174 (358)
256 1np6_A Molybdopterin-guanine d 96.0 0.0069 2.4E-07 57.9 5.6 24 297-320 6-29 (174)
257 1u0l_A Probable GTPase ENGC; p 96.0 0.0048 1.6E-07 64.0 4.6 26 296-321 168-193 (301)
258 4ido_A Atlastin-1; GTPase, GTP 95.9 0.0059 2E-07 66.9 5.3 23 296-318 66-88 (457)
259 1nij_A Hypothetical protein YJ 95.7 0.0044 1.5E-07 64.8 3.1 26 296-321 3-28 (318)
260 3ec2_A DNA replication protein 95.6 0.0056 1.9E-07 57.8 3.1 25 297-321 38-62 (180)
261 2ph1_A Nucleotide-binding prot 95.6 0.014 4.9E-07 58.7 6.3 67 358-424 127-194 (262)
262 1kgd_A CASK, peripheral plasma 94.9 0.0089 3E-07 56.8 2.2 25 296-320 4-28 (180)
263 1znw_A Guanylate kinase, GMP k 94.9 0.0079 2.7E-07 58.4 1.7 24 297-320 20-43 (207)
264 1bif_A 6-phosphofructo-2-kinas 94.8 0.0064 2.2E-07 67.0 1.0 108 296-419 38-156 (469)
265 3a00_A Guanylate kinase, GMP k 94.8 0.0088 3E-07 57.0 1.7 22 299-320 3-24 (186)
266 3tr0_A Guanylate kinase, GMP k 94.7 0.0094 3.2E-07 57.1 1.7 24 297-320 7-30 (205)
267 3bfv_A CAPA1, CAPB2, membrane 94.7 0.024 8.2E-07 57.8 4.8 65 360-425 192-257 (271)
268 1d1n_A Initiation factor 2; be 94.7 0.047 1.6E-06 47.1 5.7 82 506-596 8-93 (99)
269 3tif_A Uncharacterized ABC tra 94.6 0.013 4.4E-07 58.6 2.4 26 296-321 30-55 (235)
270 1lvg_A Guanylate kinase, GMP k 94.6 0.0096 3.3E-07 57.6 1.4 22 299-320 6-27 (198)
271 2pcj_A ABC transporter, lipopr 94.6 0.014 4.7E-07 57.9 2.5 26 296-321 29-54 (224)
272 1ye8_A Protein THEP1, hypothet 94.5 0.011 3.9E-07 56.4 1.8 23 299-321 2-24 (178)
273 2kjq_A DNAA-related protein; s 94.5 0.081 2.8E-06 48.8 7.6 25 297-321 36-60 (149)
274 3bos_A Putative DNA replicatio 94.5 0.044 1.5E-06 53.2 6.1 24 297-320 52-75 (242)
275 2i3b_A HCR-ntpase, human cance 94.5 0.054 1.9E-06 52.2 6.6 23 299-321 3-25 (189)
276 4gp7_A Metallophosphoesterase; 94.4 0.015 5.1E-07 54.8 2.4 23 297-319 9-31 (171)
277 3cio_A ETK, tyrosine-protein k 94.4 0.05 1.7E-06 56.2 6.4 65 360-425 214-279 (299)
278 3c8u_A Fructokinase; YP_612366 94.4 0.013 4.3E-07 57.0 1.7 26 296-321 21-46 (208)
279 3la6_A Tyrosine-protein kinase 94.3 0.059 2E-06 55.4 6.7 65 360-425 202-267 (286)
280 1zp6_A Hypothetical protein AT 94.3 0.017 5.8E-07 54.7 2.4 23 298-320 10-32 (191)
281 2cvh_A DNA repair and recombin 94.3 0.045 1.5E-06 52.7 5.4 24 296-319 19-42 (220)
282 2b8t_A Thymidine kinase; deoxy 94.3 0.11 3.7E-06 51.5 8.3 42 384-425 88-129 (223)
283 1z6g_A Guanylate kinase; struc 94.2 0.013 4.3E-07 57.7 1.4 25 297-321 23-47 (218)
284 1b0u_A Histidine permease; ABC 94.2 0.017 5.8E-07 58.7 2.4 26 296-321 31-56 (262)
285 1g6h_A High-affinity branched- 94.2 0.017 5.9E-07 58.4 2.4 26 296-321 32-57 (257)
286 1s96_A Guanylate kinase, GMP k 94.2 0.014 4.8E-07 57.7 1.7 26 296-321 15-40 (219)
287 2onk_A Molybdate/tungstate ABC 94.2 0.017 5.9E-07 57.9 2.3 24 298-321 25-48 (240)
288 3gfo_A Cobalt import ATP-bindi 94.1 0.019 6.4E-07 58.9 2.4 26 296-321 33-58 (275)
289 2cbz_A Multidrug resistance-as 94.1 0.019 6.6E-07 57.4 2.4 26 296-321 30-55 (237)
290 3ney_A 55 kDa erythrocyte memb 94.1 0.022 7.6E-07 55.5 2.8 26 295-320 17-42 (197)
291 4g1u_C Hemin import ATP-bindin 94.1 0.019 6.6E-07 58.5 2.4 26 296-321 36-61 (266)
292 2pze_A Cystic fibrosis transme 94.0 0.02 6.8E-07 56.9 2.4 26 296-321 33-58 (229)
293 1ji0_A ABC transporter; ATP bi 94.0 0.02 6.9E-07 57.3 2.4 26 296-321 31-56 (240)
294 1htw_A HI0065; nucleotide-bind 94.0 0.017 5.8E-07 54.2 1.7 25 297-321 33-57 (158)
295 1mv5_A LMRA, multidrug resista 94.0 0.02 6.9E-07 57.4 2.4 25 297-321 28-52 (243)
296 3jvv_A Twitching mobility prot 94.0 0.09 3.1E-06 55.8 7.5 25 297-321 123-147 (356)
297 2ff7_A Alpha-hemolysin translo 94.0 0.021 7.2E-07 57.5 2.4 26 296-321 34-59 (247)
298 3b85_A Phosphate starvation-in 93.9 0.017 6E-07 56.6 1.8 24 297-320 22-45 (208)
299 3zvl_A Bifunctional polynucleo 93.9 0.036 1.2E-06 60.0 4.4 24 296-319 257-280 (416)
300 3asz_A Uridine kinase; cytidin 93.9 0.018 6.2E-07 55.6 1.8 24 297-320 6-29 (211)
301 1sgw_A Putative ABC transporte 93.9 0.02 6.8E-07 56.5 2.1 25 297-321 35-59 (214)
302 2olj_A Amino acid ABC transpor 93.9 0.022 7.6E-07 58.0 2.4 26 296-321 49-74 (263)
303 1vpl_A ABC transporter, ATP-bi 93.8 0.023 7.8E-07 57.6 2.4 26 296-321 40-65 (256)
304 2d2e_A SUFC protein; ABC-ATPas 93.8 0.022 7.6E-07 57.3 2.3 25 296-320 28-52 (250)
305 2ghi_A Transport protein; mult 93.8 0.023 7.9E-07 57.6 2.4 26 296-321 45-70 (260)
306 2qi9_C Vitamin B12 import ATP- 93.8 0.024 8.2E-07 57.2 2.4 26 296-321 25-50 (249)
307 3tau_A Guanylate kinase, GMP k 93.7 0.026 8.7E-07 54.9 2.5 25 296-320 7-31 (208)
308 2ixe_A Antigen peptide transpo 93.7 0.024 8.3E-07 57.8 2.4 26 296-321 44-69 (271)
309 2j41_A Guanylate kinase; GMP, 93.7 0.023 8E-07 54.3 2.2 24 297-320 6-29 (207)
310 2yz2_A Putative ABC transporte 93.7 0.025 8.5E-07 57.6 2.4 26 296-321 32-57 (266)
311 2ihy_A ABC transporter, ATP-bi 93.6 0.026 8.8E-07 58.0 2.4 26 296-321 46-71 (279)
312 3lw7_A Adenylate kinase relate 93.6 0.027 9.2E-07 51.8 2.4 20 298-317 2-21 (179)
313 2crv_A IF-2MT, translation ini 93.6 0.17 5.8E-06 45.1 7.3 79 506-596 12-101 (120)
314 2zu0_C Probable ATP-dependent 93.6 0.025 8.7E-07 57.5 2.3 25 296-320 45-69 (267)
315 2nq2_C Hypothetical ABC transp 93.6 0.027 9.3E-07 56.9 2.5 26 296-321 30-55 (253)
316 1ex7_A Guanylate kinase; subst 93.6 0.026 8.9E-07 54.5 2.2 22 296-319 2-23 (186)
317 3lnc_A Guanylate kinase, GMP k 93.4 0.024 8.1E-07 55.9 1.7 24 297-320 27-51 (231)
318 4a1f_A DNAB helicase, replicat 93.4 0.044 1.5E-06 57.9 3.8 24 297-320 46-69 (338)
319 2pt7_A CAG-ALFA; ATPase, prote 93.4 0.24 8.3E-06 51.8 9.5 23 299-321 173-195 (330)
320 2bbw_A Adenylate kinase 4, AK4 93.4 0.033 1.1E-06 55.4 2.7 23 296-318 26-48 (246)
321 1g3q_A MIND ATPase, cell divis 93.3 0.058 2E-06 52.8 4.3 65 359-425 111-176 (237)
322 2qor_A Guanylate kinase; phosp 93.3 0.031 1.1E-06 53.9 2.2 24 296-319 11-34 (204)
323 1knq_A Gluconate kinase; ALFA/ 93.2 0.036 1.2E-06 51.7 2.4 23 297-319 8-30 (175)
324 2bbs_A Cystic fibrosis transme 93.1 0.035 1.2E-06 57.3 2.5 26 296-321 63-88 (290)
325 3aez_A Pantothenate kinase; tr 93.1 0.028 9.5E-07 58.7 1.7 25 296-320 89-113 (312)
326 3fvq_A Fe(3+) IONS import ATP- 93.1 0.034 1.2E-06 59.2 2.4 25 297-321 30-54 (359)
327 1kag_A SKI, shikimate kinase I 93.1 0.033 1.1E-06 51.7 2.1 22 298-319 5-26 (173)
328 2bdt_A BH3686; alpha-beta prot 93.0 0.037 1.3E-06 52.5 2.3 21 299-319 4-24 (189)
329 2pjz_A Hypothetical protein ST 93.0 0.037 1.3E-06 56.3 2.4 25 297-321 30-54 (263)
330 3tui_C Methionine import ATP-b 92.9 0.037 1.3E-06 59.1 2.3 26 296-321 53-78 (366)
331 1fnn_A CDC6P, cell division co 92.9 0.15 5E-06 53.5 6.9 22 299-320 46-67 (389)
332 4eun_A Thermoresistant glucoki 92.9 0.043 1.5E-06 52.7 2.6 24 296-319 28-51 (200)
333 2eyu_A Twitching motility prot 92.9 0.032 1.1E-06 56.6 1.7 26 296-321 24-49 (261)
334 1qhx_A CPT, protein (chloramph 92.8 0.048 1.6E-06 50.9 2.7 23 297-319 3-25 (178)
335 3kb2_A SPBC2 prophage-derived 92.8 0.044 1.5E-06 50.5 2.4 21 299-319 3-23 (173)
336 4a74_A DNA repair and recombin 92.8 0.036 1.2E-06 53.8 1.8 24 297-320 25-48 (231)
337 1z47_A CYSA, putative ABC-tran 92.8 0.04 1.4E-06 58.6 2.3 26 296-321 40-65 (355)
338 1njg_A DNA polymerase III subu 92.8 0.14 4.9E-06 48.9 6.2 22 298-319 46-67 (250)
339 2yyz_A Sugar ABC transporter, 92.7 0.04 1.4E-06 58.7 2.3 26 296-321 28-53 (359)
340 2zr9_A Protein RECA, recombina 92.7 0.083 2.9E-06 55.9 4.7 25 296-320 60-84 (349)
341 1kht_A Adenylate kinase; phosp 92.7 0.046 1.6E-06 51.3 2.5 23 297-319 3-25 (192)
342 2it1_A 362AA long hypothetical 92.7 0.041 1.4E-06 58.6 2.3 26 296-321 28-53 (362)
343 2ehv_A Hypothetical protein PH 92.6 0.042 1.4E-06 54.0 2.2 24 296-319 29-52 (251)
344 1g29_1 MALK, maltose transport 92.6 0.043 1.5E-06 58.7 2.3 26 296-321 28-53 (372)
345 3rlf_A Maltose/maltodextrin im 92.6 0.043 1.5E-06 58.9 2.3 26 296-321 28-53 (381)
346 1v43_A Sugar-binding transport 92.5 0.044 1.5E-06 58.6 2.3 26 296-321 36-61 (372)
347 1g7s_A Translation initiation 92.5 0.25 8.4E-06 56.1 8.5 88 506-605 465-560 (594)
348 1hyq_A MIND, cell division inh 92.5 0.06 2E-06 53.8 3.1 65 359-425 110-175 (263)
349 3ea0_A ATPase, para family; al 92.5 0.069 2.4E-06 52.4 3.5 65 359-425 118-185 (245)
350 2jeo_A Uridine-cytidine kinase 92.5 0.04 1.4E-06 54.9 1.7 23 297-319 25-47 (245)
351 2v9p_A Replication protein E1; 92.5 0.04 1.4E-06 57.4 1.8 25 297-321 126-150 (305)
352 3q9l_A Septum site-determining 92.4 0.064 2.2E-06 53.2 3.2 64 359-424 113-185 (260)
353 3t61_A Gluconokinase; PSI-biol 92.4 0.053 1.8E-06 52.0 2.5 23 297-319 18-40 (202)
354 3tqc_A Pantothenate kinase; bi 92.4 0.046 1.6E-06 57.3 2.2 24 296-319 91-114 (321)
355 2f1r_A Molybdopterin-guanine d 92.4 0.025 8.5E-07 53.8 0.1 24 298-321 3-26 (171)
356 1tev_A UMP-CMP kinase; ploop, 92.3 0.049 1.7E-06 51.3 2.1 23 296-318 2-24 (196)
357 1cke_A CK, MSSA, protein (cyti 92.3 0.055 1.9E-06 52.6 2.5 23 297-319 5-27 (227)
358 1ly1_A Polynucleotide kinase; 92.3 0.051 1.7E-06 50.5 2.1 22 298-319 3-24 (181)
359 2chg_A Replication factor C sm 92.3 0.34 1.2E-05 45.7 8.0 21 299-319 40-60 (226)
360 3nh6_A ATP-binding cassette SU 92.2 0.037 1.3E-06 57.7 1.2 26 296-321 79-104 (306)
361 1sxj_A Activator 1 95 kDa subu 92.2 0.26 9E-06 54.7 8.1 22 298-319 78-99 (516)
362 1zo1_I IF2, translation initia 92.1 0.3 1E-05 54.2 8.4 84 505-596 409-495 (501)
363 2plr_A DTMP kinase, probable t 92.1 0.058 2E-06 51.5 2.4 24 296-319 3-26 (213)
364 3d31_A Sulfate/molybdate ABC t 92.0 0.039 1.3E-06 58.5 1.1 25 297-321 26-50 (348)
365 1sq5_A Pantothenate kinase; P- 92.0 0.05 1.7E-06 56.4 1.8 25 296-320 79-103 (308)
366 3gd7_A Fusion complex of cysti 91.9 0.059 2E-06 58.0 2.4 26 296-321 46-71 (390)
367 3pfi_A Holliday junction ATP-d 91.9 0.2 6.9E-06 51.8 6.4 21 299-319 57-77 (338)
368 3kta_A Chromosome segregation 91.9 0.073 2.5E-06 49.9 2.7 25 295-319 24-48 (182)
369 1jjv_A Dephospho-COA kinase; P 91.9 0.062 2.1E-06 51.6 2.3 22 298-319 3-24 (206)
370 1xjc_A MOBB protein homolog; s 91.8 0.066 2.3E-06 50.8 2.3 24 297-320 4-27 (169)
371 3bh0_A DNAB-like replicative h 91.8 0.11 3.9E-06 53.8 4.4 24 297-320 68-91 (315)
372 3k9g_A PF-32 protein; ssgcid, 91.8 0.15 5E-06 51.1 5.0 64 359-424 144-209 (267)
373 2orw_A Thymidine kinase; TMTK, 91.7 0.34 1.2E-05 46.2 7.3 39 385-423 76-114 (184)
374 3iij_A Coilin-interacting nucl 91.7 0.073 2.5E-06 49.9 2.5 23 296-318 10-32 (180)
375 2if2_A Dephospho-COA kinase; a 91.7 0.071 2.4E-06 51.0 2.5 21 299-319 3-23 (204)
376 2rhm_A Putative kinase; P-loop 91.7 0.069 2.4E-06 50.3 2.3 23 297-319 5-27 (193)
377 1wcv_1 SOJ, segregation protei 91.7 0.1 3.5E-06 52.1 3.7 65 358-424 110-181 (257)
378 1rz3_A Hypothetical protein rb 91.7 0.07 2.4E-06 51.4 2.4 24 296-319 21-44 (201)
379 2vp4_A Deoxynucleoside kinase; 91.7 0.067 2.3E-06 52.7 2.3 25 296-320 19-43 (230)
380 1oxx_K GLCV, glucose, ABC tran 91.7 0.038 1.3E-06 58.7 0.5 26 296-321 30-55 (353)
381 3uie_A Adenylyl-sulfate kinase 91.6 0.069 2.4E-06 51.3 2.3 26 295-320 23-48 (200)
382 2jaq_A Deoxyguanosine kinase; 91.5 0.074 2.5E-06 50.5 2.4 21 299-319 2-22 (205)
383 3n70_A Transport activator; si 91.5 0.17 5.7E-06 46.0 4.6 20 300-319 27-46 (145)
384 2c95_A Adenylate kinase 1; tra 91.5 0.088 3E-06 49.7 2.8 23 296-318 8-30 (196)
385 3lda_A DNA repair protein RAD5 91.4 0.083 2.9E-06 57.0 2.9 23 296-318 177-199 (400)
386 1ukz_A Uridylate kinase; trans 91.4 0.076 2.6E-06 50.8 2.3 23 296-318 14-36 (203)
387 1nks_A Adenylate kinase; therm 91.4 0.071 2.4E-06 50.0 2.1 21 299-319 3-23 (194)
388 2v54_A DTMP kinase, thymidylat 91.4 0.087 3E-06 50.2 2.7 24 296-319 3-26 (204)
389 1xp8_A RECA protein, recombina 91.4 0.17 6E-06 53.8 5.3 25 296-320 73-97 (366)
390 2qt1_A Nicotinamide riboside k 91.3 0.08 2.7E-06 50.9 2.4 24 297-320 21-44 (207)
391 1odf_A YGR205W, hypothetical 3 91.3 0.075 2.5E-06 54.8 2.3 26 295-320 29-54 (290)
392 2wwf_A Thymidilate kinase, put 91.3 0.092 3.2E-06 50.3 2.8 24 296-319 9-32 (212)
393 2gza_A Type IV secretion syste 91.2 0.073 2.5E-06 56.5 2.1 24 298-321 176-199 (361)
394 1y63_A LMAJ004144AAA protein; 91.1 0.1 3.5E-06 49.4 2.9 24 296-319 9-32 (184)
395 1uf9_A TT1252 protein; P-loop, 91.1 0.088 3E-06 50.0 2.4 24 296-319 7-30 (203)
396 1nn5_A Similar to deoxythymidy 91.1 0.095 3.3E-06 50.2 2.7 24 296-319 8-31 (215)
397 2vli_A Antibiotic resistance p 91.1 0.077 2.6E-06 49.6 1.9 23 296-318 4-26 (183)
398 2yvu_A Probable adenylyl-sulfa 91.0 0.093 3.2E-06 49.5 2.4 26 295-320 11-36 (186)
399 3cm0_A Adenylate kinase; ATP-b 90.8 0.081 2.8E-06 49.7 1.8 22 297-318 4-25 (186)
400 2cdn_A Adenylate kinase; phosp 90.8 0.11 3.8E-06 49.6 2.8 26 294-319 17-42 (201)
401 4e22_A Cytidylate kinase; P-lo 90.7 0.11 3.7E-06 52.1 2.7 23 296-318 26-48 (252)
402 1f2t_A RAD50 ABC-ATPase; DNA d 90.6 0.1 3.5E-06 48.1 2.3 25 295-319 21-45 (149)
403 3trf_A Shikimate kinase, SK; a 90.5 0.11 3.6E-06 48.9 2.4 22 297-318 5-26 (185)
404 4fcw_A Chaperone protein CLPB; 90.5 0.18 6.2E-06 51.3 4.3 22 299-320 49-70 (311)
405 3vaa_A Shikimate kinase, SK; s 90.5 0.1 3.6E-06 49.9 2.4 22 298-319 26-47 (199)
406 1vht_A Dephospho-COA kinase; s 90.5 0.1 3.4E-06 50.6 2.2 23 297-319 4-26 (218)
407 1gtv_A TMK, thymidylate kinase 90.4 0.066 2.3E-06 51.4 0.8 21 299-319 2-22 (214)
408 3bgw_A DNAB-like replicative h 90.4 0.18 6.3E-06 55.0 4.4 25 296-320 196-220 (444)
409 1hqc_A RUVB; extended AAA-ATPa 90.4 0.41 1.4E-05 48.9 6.9 20 300-319 41-60 (324)
410 2npi_A Protein CLP1; CLP1-PCF1 90.3 0.083 2.9E-06 58.1 1.7 26 296-321 137-162 (460)
411 1sxj_E Activator 1 40 kDa subu 90.3 0.3 1E-05 50.7 5.9 21 300-320 39-59 (354)
412 2bwj_A Adenylate kinase 5; pho 90.3 0.12 4.2E-06 48.8 2.6 23 297-319 12-34 (199)
413 1zd8_A GTP:AMP phosphotransfer 90.3 0.12 4.1E-06 50.5 2.6 23 296-318 6-28 (227)
414 2ewv_A Twitching motility prot 90.3 0.089 3E-06 56.2 1.8 25 297-321 136-160 (372)
415 3fgn_A Dethiobiotin synthetase 90.3 0.2 7E-06 50.5 4.3 64 359-423 126-197 (251)
416 3co5_A Putative two-component 90.2 0.22 7.6E-06 45.1 4.2 20 300-319 30-49 (143)
417 2oap_1 GSPE-2, type II secreti 90.0 0.1 3.6E-06 58.1 2.1 23 299-321 262-284 (511)
418 1p9r_A General secretion pathw 90.0 0.094 3.2E-06 56.9 1.7 25 296-320 166-190 (418)
419 3ozx_A RNAse L inhibitor; ATP 90.0 0.11 3.9E-06 58.1 2.4 24 298-321 26-49 (538)
420 1qf9_A UMP/CMP kinase, protein 90.0 0.13 4.6E-06 48.1 2.5 23 297-319 6-28 (194)
421 1zak_A Adenylate kinase; ATP:A 89.9 0.13 4.4E-06 50.1 2.4 23 297-319 5-27 (222)
422 2pez_A Bifunctional 3'-phospho 89.9 0.12 4.2E-06 48.3 2.2 24 296-319 4-27 (179)
423 1lw7_A Transcriptional regulat 89.9 0.082 2.8E-06 56.0 1.1 23 298-320 171-193 (365)
424 1aky_A Adenylate kinase; ATP:A 89.9 0.14 4.7E-06 49.8 2.6 24 296-319 3-26 (220)
425 3euj_A Chromosome partition pr 89.9 0.098 3.4E-06 57.8 1.7 23 298-320 30-52 (483)
426 3hr8_A Protein RECA; alpha and 89.8 0.43 1.5E-05 50.6 6.6 24 297-320 61-84 (356)
427 2iyv_A Shikimate kinase, SK; t 89.7 0.12 4.1E-06 48.5 2.0 21 298-318 3-23 (184)
428 3pxg_A Negative regulator of g 89.7 0.38 1.3E-05 52.7 6.3 24 297-320 201-224 (468)
429 3be4_A Adenylate kinase; malar 89.7 0.14 4.9E-06 49.7 2.6 25 295-319 3-27 (217)
430 2v1u_A Cell division control p 89.7 0.23 7.9E-06 51.8 4.4 23 298-320 45-67 (387)
431 2pbr_A DTMP kinase, thymidylat 89.7 0.14 4.7E-06 48.2 2.4 21 299-319 2-22 (195)
432 3fb4_A Adenylate kinase; psych 89.5 0.14 4.8E-06 49.4 2.4 21 299-319 2-22 (216)
433 1gvn_B Zeta; postsegregational 89.5 0.14 4.8E-06 52.5 2.4 24 296-319 32-55 (287)
434 1yqt_A RNAse L inhibitor; ATP- 89.5 0.13 4.4E-06 57.7 2.3 25 297-321 47-71 (538)
435 2z0h_A DTMP kinase, thymidylat 89.4 0.15 5E-06 48.2 2.4 21 299-319 2-22 (197)
436 1u94_A RECA protein, recombina 89.4 0.18 6.3E-06 53.4 3.3 25 296-320 62-86 (356)
437 2w0m_A SSO2452; RECA, SSPF, un 89.4 0.14 4.7E-06 49.4 2.2 25 297-321 23-47 (235)
438 2q6t_A DNAB replication FORK h 89.3 0.25 8.5E-06 53.8 4.4 24 297-320 200-223 (444)
439 1q57_A DNA primase/helicase; d 89.2 0.18 6.3E-06 55.7 3.3 25 296-320 241-265 (503)
440 3a4m_A L-seryl-tRNA(SEC) kinas 89.0 0.15 5.1E-06 51.2 2.2 23 297-319 4-26 (260)
441 1via_A Shikimate kinase; struc 89.0 0.15 5.2E-06 47.5 2.1 20 299-318 6-25 (175)
442 1e6c_A Shikimate kinase; phosp 88.9 0.15 5.2E-06 47.1 2.0 21 299-319 4-24 (173)
443 3j16_B RLI1P; ribosome recycli 88.9 0.15 5E-06 58.1 2.3 25 297-321 103-127 (608)
444 3ozx_A RNAse L inhibitor; ATP 88.9 0.15 5.3E-06 57.1 2.4 26 296-321 293-318 (538)
445 3dl0_A Adenylate kinase; phosp 88.8 0.17 5.8E-06 48.8 2.4 20 299-318 2-21 (216)
446 3tlx_A Adenylate kinase 2; str 88.7 0.16 5.6E-06 50.5 2.2 24 296-319 28-51 (243)
447 1xx6_A Thymidine kinase; NESG, 88.7 0.62 2.1E-05 44.9 6.3 39 386-424 82-120 (191)
448 3r20_A Cytidylate kinase; stru 88.7 0.18 6.1E-06 50.3 2.5 24 295-318 7-30 (233)
449 2r6a_A DNAB helicase, replicat 88.7 0.24 8.2E-06 54.1 3.7 26 296-321 202-227 (454)
450 1a7j_A Phosphoribulokinase; tr 88.6 0.16 5.5E-06 52.2 2.2 24 296-319 4-27 (290)
451 2pt5_A Shikimate kinase, SK; a 88.6 0.18 6.2E-06 46.3 2.3 21 299-319 2-22 (168)
452 1jr3_A DNA polymerase III subu 88.6 0.88 3E-05 47.3 7.9 22 298-319 39-60 (373)
453 1uj2_A Uridine-cytidine kinase 88.5 0.17 5.8E-06 50.4 2.2 24 296-319 21-44 (252)
454 4a82_A Cystic fibrosis transme 88.5 0.17 5.7E-06 57.2 2.4 26 296-321 366-391 (578)
455 3qf7_A RAD50; ABC-ATPase, ATPa 88.5 0.17 5.7E-06 53.8 2.3 24 296-319 22-45 (365)
456 1cr0_A DNA primase/helicase; R 88.5 0.15 5.1E-06 52.0 1.8 26 296-321 34-59 (296)
457 3io5_A Recombination and repai 88.5 0.67 2.3E-05 48.5 6.7 21 299-319 30-50 (333)
458 3b60_A Lipid A export ATP-bind 88.4 0.18 6E-06 57.0 2.5 25 297-321 369-393 (582)
459 2obl_A ESCN; ATPase, hydrolase 88.4 0.15 5.2E-06 53.9 1.8 26 296-321 70-95 (347)
460 2yl4_A ATP-binding cassette SU 88.3 0.17 6E-06 57.2 2.4 26 296-321 369-394 (595)
461 1byi_A Dethiobiotin synthase; 88.2 0.37 1.3E-05 46.5 4.4 66 359-424 108-179 (224)
462 1v5w_A DMC1, meiotic recombina 88.2 0.37 1.3E-05 50.6 4.6 25 296-320 121-145 (343)
463 3bk7_A ABC transporter ATP-bin 88.1 0.18 6.3E-06 57.3 2.4 25 297-321 117-141 (607)
464 2p5t_B PEZT; postsegregational 88.1 0.17 5.9E-06 50.6 1.9 24 296-319 31-54 (253)
465 1yqt_A RNAse L inhibitor; ATP- 88.1 0.18 6.3E-06 56.4 2.3 25 297-321 312-336 (538)
466 2x8a_A Nuclear valosin-contain 88.0 0.15 5.1E-06 51.9 1.4 20 300-319 47-66 (274)
467 1m7g_A Adenylylsulfate kinase; 88.0 0.2 6.9E-06 48.4 2.3 24 296-319 24-47 (211)
468 1p5z_B DCK, deoxycytidine kina 87.9 0.2 6.7E-06 50.3 2.2 25 295-319 22-46 (263)
469 2z43_A DNA repair and recombin 87.9 0.22 7.5E-06 51.8 2.7 25 296-320 106-130 (324)
470 3qf4_B Uncharacterized ABC tra 87.8 0.2 6.8E-06 56.8 2.5 25 297-321 381-405 (598)
471 2ze6_A Isopentenyl transferase 87.8 0.2 6.9E-06 50.2 2.3 21 299-319 3-23 (253)
472 2f6r_A COA synthase, bifunctio 87.8 0.21 7E-06 51.0 2.3 23 296-318 74-96 (281)
473 3b5x_A Lipid A export ATP-bind 87.8 0.19 6.4E-06 56.8 2.2 25 297-321 369-393 (582)
474 2bjv_A PSP operon transcriptio 87.7 0.72 2.4E-05 45.9 6.2 21 300-320 32-52 (265)
475 3ake_A Cytidylate kinase; CMP 87.6 0.23 7.8E-06 47.2 2.4 22 298-319 3-24 (208)
476 1ixz_A ATP-dependent metallopr 87.6 0.17 5.8E-06 50.2 1.5 20 300-319 52-71 (254)
477 3qf4_A ABC transporter, ATP-bi 87.5 0.21 7.3E-06 56.4 2.4 25 297-321 369-393 (587)
478 1e4v_A Adenylate kinase; trans 87.5 0.24 8.2E-06 47.9 2.5 21 299-319 2-22 (214)
479 3e2i_A Thymidine kinase; Zn-bi 87.5 0.57 1.9E-05 46.2 5.1 40 385-424 101-140 (219)
480 3qks_A DNA double-strand break 87.4 0.23 7.8E-06 48.1 2.3 25 295-319 21-45 (203)
481 2dpy_A FLII, flagellum-specifi 87.3 0.19 6.5E-06 54.9 1.8 26 296-321 156-181 (438)
482 3bk7_A ABC transporter ATP-bin 87.3 0.22 7.4E-06 56.7 2.3 26 297-322 382-407 (607)
483 3umf_A Adenylate kinase; rossm 87.3 0.23 7.9E-06 49.0 2.2 24 296-319 28-51 (217)
484 3j16_B RLI1P; ribosome recycli 87.2 0.22 7.5E-06 56.7 2.3 25 298-322 379-403 (608)
485 1ak2_A Adenylate kinase isoenz 87.1 0.27 9.4E-06 48.2 2.7 24 296-319 15-38 (233)
486 1in4_A RUVB, holliday junction 87.0 0.2 6.9E-06 52.3 1.7 23 298-320 52-74 (334)
487 2xb4_A Adenylate kinase; ATP-b 87.0 0.25 8.6E-06 48.3 2.4 21 299-319 2-22 (223)
488 3nwj_A ATSK2; P loop, shikimat 86.9 0.22 7.7E-06 50.1 2.0 23 297-319 48-70 (250)
489 1jbk_A CLPB protein; beta barr 86.9 0.29 1E-05 45.0 2.6 23 298-320 44-66 (195)
490 1n0w_A DNA repair protein RAD5 86.9 0.24 8.4E-06 48.2 2.2 25 296-320 23-47 (243)
491 1qhl_A Protein (cell division 86.6 0.039 1.3E-06 55.0 -3.8 23 299-321 29-51 (227)
492 4eaq_A DTMP kinase, thymidylat 86.5 0.27 9.1E-06 48.6 2.2 24 296-319 25-48 (229)
493 1zuh_A Shikimate kinase; alpha 86.5 0.28 9.5E-06 45.3 2.2 20 299-318 9-28 (168)
494 2h92_A Cytidylate kinase; ross 86.4 0.27 9.4E-06 47.4 2.2 23 297-319 3-25 (219)
495 1iy2_A ATP-dependent metallopr 86.2 0.22 7.6E-06 50.2 1.5 20 300-319 76-95 (278)
496 3sr0_A Adenylate kinase; phosp 86.2 0.3 1E-05 47.6 2.4 21 299-319 2-22 (206)
497 3exa_A TRNA delta(2)-isopenten 86.1 0.28 9.6E-06 51.2 2.2 24 296-319 2-25 (322)
498 1q3t_A Cytidylate kinase; nucl 85.9 0.35 1.2E-05 47.5 2.7 25 295-319 14-38 (236)
499 2grj_A Dephospho-COA kinase; T 85.8 0.31 1.1E-05 46.9 2.3 24 296-319 11-34 (192)
500 3qkt_A DNA double-strand break 85.5 0.31 1.1E-05 51.0 2.3 25 295-319 21-45 (339)
No 1
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=2.5e-49 Score=451.09 Aligned_cols=347 Identities=39% Similarity=0.663 Sum_probs=283.7
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccc--cccCCCcEEEEeCCCCC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNAD--AKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~--~~~~~~~l~iIDTPGh~ 371 (657)
++|+|+|+|+||+|||||||+++|++..+.....+|+|+++|.+++++......+..+... ..+..+.++|||||||.
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4688999999999999999999999988877777899999999988876432222111111 12334469999999999
Q ss_pred cchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHH
Q 036359 372 SFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEF 451 (657)
Q Consensus 372 ~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~ 451 (657)
+|..++.++++.+|++|||||+++|+++||+++|.++...++|+|+|+||||+...|....+.++...+..+...+...|
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~ 161 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988987778889999988888999999
Q ss_pred HHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc-----------------cccccceeEEEEEe
Q 036359 452 KMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-----------------FRNEVQCTILEVKV 514 (657)
Q Consensus 452 ~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-----------------~~~~~~~~Vlev~~ 514 (657)
...+..+...|.+.|++.+.|+....++..+++||+||++|.++.+++. ...++.++|++++.
T Consensus 162 ~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~ 241 (594)
T 1g7s_A 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKE 241 (594)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCceeEEEEEEE
Confidence 9999999999999999988887776778889999999999887755431 13468999999999
Q ss_pred ecCceeEEEEEEEeeeecCCCEEE-ecccc----chhhccCCCCCceeE-EeeeeecccccccccccEEEecCCCCCCCC
Q 036359 515 CEGYGTTIDVVLINGVLHEGDKIV-EPIDT----KIQALLTPHPMKELR-VKGAYQHHKEIKAAQGIKITAQGLQDAIAG 588 (657)
Q Consensus 515 ~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~----~Vr~ll~p~~~~e~r-Vksi~~~~~~v~~a~gv~i~~~gl~~~~aG 588 (657)
++|.|++++++|++|+|++||.|+ +|..+ +|++|++|.++.+++ ...-+.....+.+++|+.+++.||+++.+|
T Consensus 242 d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~G 321 (594)
T 1g7s_A 242 ETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAG 321 (594)
T ss_dssp ETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTT
T ss_pred eCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCCCCC
Confidence 999999999999999999999998 66544 999999998887776 333444556666668999999999999999
Q ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhhhhhhhcHHHHhhhhccccccEEEEcCccchHHHHHHhcccC
Q 036359 589 TSLYVVGPNDDLEDVKKAAMEEMKSVTEAASEGMKSVMSKVDKTCEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 589 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vkad~~gslea~~~~l~~~ 656 (657)
++|+++.++ +.+++.+++++ .++ ++.....||||||||+||||||+++|.+.
T Consensus 322 d~l~~~~~~---~~~~~~~~~~~-----------~~~--~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 322 SPLRVVTDP---EKVREEILSEI-----------EDI--KIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp CEEEECSSH---HHHHHHHHHHH-----------HTT--SCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred CEEEecCCH---HHHHHHHHHHH-----------Hhc--ccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 999999765 33444444333 333 45667889999999999999999999864
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=8.6e-45 Score=404.99 Aligned_cols=301 Identities=30% Similarity=0.434 Sum_probs=233.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.|+|+|+|+||+|||||||+++|++..+..+..+|+|++++.+++.+.. ..++|||||||.+|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~----------------~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN----------------GMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS----------------SCCCEECCCTTTCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC----------------EEEEEEECCCcHHHH
Confidence 4788899999999999999999999888888889999999987776542 348999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.++.++++.+|++|||||+++|+++||+++|.++...++|+|||+||||+.. |...
T Consensus 66 ~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~-~~~~----------------------- 121 (501)
T 1zo1_I 66 SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE-ADPD----------------------- 121 (501)
T ss_dssp TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST-TCCC-----------------------
T ss_pred HHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc-cCHH-----------------------
Confidence 9999999999999999999999999999999999999999999999999963 2110
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc--------------ccccceeEEEEEeecCcee
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF--------------RNEVQCTILEVKVCEGYGT 520 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~--------------~~~~~~~Vlev~~~~g~Gt 520 (657)
.+...|...++... .|+..+++||+||++|.++.+++.. ..++.++|++++.++|.|+
T Consensus 122 --~v~~~l~~~~~~~~------~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~ 193 (501)
T 1zo1_I 122 --RVKNELSQYGILPE------EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGP 193 (501)
T ss_dssp --CTTCCCCCCCCCTT------CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSE
T ss_pred --HHHHHHHHhhhhHH------HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEE
Confidence 11111222233221 3455689999999999887664421 3357899999999999999
Q ss_pred EEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cccEEEecCCCCC-CCCCeEEEcCCC
Q 036359 521 TIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QGIKITAQGLQDA-IAGTSLYVVGPN 597 (657)
Q Consensus 521 Vv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~gv~i~~~gl~~~-~aG~~l~v~~~~ 597 (657)
+++++|++|+|++||.|+ |+..++||+|++++. ..+..| +|..+.+.||+++ .+|+.|+++.++
T Consensus 194 v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g-------------~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~ 260 (501)
T 1zo1_I 194 VATVLVREGTLHKGDIVLCGFEYGRVRAMRNELG-------------QEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDE 260 (501)
T ss_dssp EEEEEEEESBCCTTCEEEEEBSSCEEEEECCTTT-------------TSEEEECCSSCSSSEEECSCCCTTEEEEEECSS
T ss_pred EEEEEEEeeEEecCCEEEEccceeEEEEEEecCC-------------CcCcEeccCCcEEEeCCCCCCCCCCEEEecCCH
Confidence 999999999999999998 888888888877653 223322 3444444588885 899999999887
Q ss_pred ccHHHHHHHHHHHHH--HhhhhhhhcHHHHhhhhccc---cccEEEEcCccchHHHHHHhcccC
Q 036359 598 DDLEDVKKAAMEEMK--SVTEAASEGMKSVMSKVDKT---CEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 598 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~v~vkad~~gslea~~~~l~~~ 656 (657)
+.++.+.+......+ ........+|+++++++..+ ..||||||||+||||||+++|.+.
T Consensus 261 ~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~ 324 (501)
T 1zo1_I 261 KKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKL 324 (501)
T ss_dssp CTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhh
Confidence 765554332111000 01112235678888888654 579999999999999999999863
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=2e-42 Score=388.94 Aligned_cols=300 Identities=28% Similarity=0.385 Sum_probs=227.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.|+|+|+||||+|||||||+++|++..+.....+|+|++++.+.+.+.. ...++|||||||.+|.
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~---------------g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS---------------GEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC---------------SSCCBCEECSSSCCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC---------------CCEEEEEECCChHHHH
Confidence 3788999999999999999999999988888889999999988776532 1248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.++.+++..+|++|||||+++|+++||.++|.++...++|+|||+||+|+.. +...
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~-~~~~----------------------- 122 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE-ADPE----------------------- 122 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT-TSCC-----------------------
T ss_pred HHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc-cchH-----------------------
Confidence 9999999999999999999999999999999999999999999999999963 1100
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc--------------cccccceeEEEEEeecCcee
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA--------------FRNEVQCTILEVKVCEGYGT 520 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~--------------~~~~~~~~Vlev~~~~g~Gt 520 (657)
.+...+...++.. ..|+..+++||+||++|.++.+++. ...++.++|++++.++|.|+
T Consensus 123 --~v~~~l~~~~~~~------e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~ 194 (537)
T 3izy_P 123 --KVKKELLAYDVVC------EDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGP 194 (537)
T ss_dssp --SSSSHHHHTTSCC------CCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCC
T ss_pred --HHHHHHHhhhhhH------HhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCce
Confidence 1111223333332 2345678999999999888766432 23468899999999999999
Q ss_pred EEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecc-cccccc-cccEEEecCCCCC-CCCCeEEEcCC
Q 036359 521 TIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHH-KEIKAA-QGIKITAQGLQDA-IAGTSLYVVGP 596 (657)
Q Consensus 521 Vv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~-~~v~~a-~gv~i~~~gl~~~-~aG~~l~v~~~ 596 (657)
|++++|.+|+|++||.|+ |+.+ .+|++++.|+ .++..| +|..+.+.|++++ .+|+.|+++.+
T Consensus 195 V~~g~V~~G~l~~Gd~v~~g~~~--------------~kVr~i~~~~g~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~ 260 (537)
T 3izy_P 195 VTTAIIQRGTLRKGSILVAGKSW--------------AKVRLMFDENGRAVNEAYPSMPVGIIGWRDLPSAGDEILEVES 260 (537)
T ss_dssp CEEEEEEEECCSSEEEECCSSCC--------------EEEEEEEECCCCCSCCSCCSTTCCCCSSEEEEEEESSCCSCCS
T ss_pred EEEEEEecCEEEcCCEEEeCCce--------------EEEEEEEcCCCCCCcEEcCCCEEEEECCCCCCCCCCEEEecCC
Confidence 999999999999999988 6544 4566666654 566666 5777777899886 89999999988
Q ss_pred CccHHHHHHHHHHHHHHh------------------------hhhhhhc----HHHHhh--------h------hccccc
Q 036359 597 NDDLEDVKKAAMEEMKSV------------------------TEAASEG----MKSVMS--------K------VDKTCE 634 (657)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~----~~~~~~--------~------~~~~~~ 634 (657)
+..++.+.+.+....+.. ......+ +..++. + ......
T Consensus 261 ~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (537)
T 3izy_P 261 EPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVL 340 (537)
T ss_dssp SCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHHHHHCTTTTCCCCCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhhhhccchhhhhhhhhhhhhhhhhhccchhhccccccee
Confidence 877665544221111000 0000000 111221 1 123467
Q ss_pred cEEEEcCccchHHHHHHhccc
Q 036359 635 GVCMQASTWGSLEALLAFSYP 655 (657)
Q Consensus 635 ~v~vkad~~gslea~~~~l~~ 655 (657)
+|||||||+||||||+++|.+
T Consensus 341 ~~iik~d~~Gs~ea~~~~l~~ 361 (537)
T 3izy_P 341 PVIVKGDVDGSVEAILNVMDT 361 (537)
T ss_dssp CBEEEBCCHHHHHHHHHHHHH
T ss_pred eEEEEeCCcchHHHHHHHHHh
Confidence 999999999999999999975
No 4
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=3.3e-33 Score=308.63 Aligned_cols=240 Identities=25% Similarity=0.404 Sum_probs=188.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc-------------------------------ccccccCceeeeccceeeeccccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPVENIQ 345 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~-------------------------------v~~~~~~GiT~~ig~~~~~~~~~~ 345 (657)
...|+|+||+|||||||+++|++.. ....+.+|+|.+++..++.+..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~-- 94 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK-- 94 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC--
Confidence 4459999999999999999995431 1223346788877776665543
Q ss_pred chhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCc-------hhHHHHHHHHHhcCCc-eEE
Q 036359 346 KRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIK-------PQTIESLDLLKERSVD-FII 417 (657)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~-------~qt~e~l~~l~~~~vP-iIv 417 (657)
+.|+|||||||.+|..++.++++.+|++|||||+++|.+ +||++|+.++..+++| +||
T Consensus 95 --------------~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 95 --------------KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160 (439)
T ss_pred --------------eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence 359999999999999999999999999999999999986 7999999999999999 999
Q ss_pred Eeccccccc-CcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhh
Q 036359 418 ALSKADKLY-GWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV 496 (657)
Q Consensus 418 vlNKiDl~~-~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~ 496 (657)
|+||||+.. +|.. ..+......+...+...|++.. ..++|||+||++|.++.
T Consensus 161 viNK~Dl~~~~~~~------------------~~~~~i~~~~~~~l~~~g~~~~---------~~~~~i~iSA~~G~ni~ 213 (439)
T 3j2k_7 161 LINKMDDPTVNWSN------------------ERYEECKEKLVPFLKKVGFNPK---------KDIHFMPCSGLTGANLK 213 (439)
T ss_pred EeecCCCcccchHH------------------HHHHHHHHHHHHHHHHhccccc---------CCeeEEEeeccCCcccc
Confidence 999999963 2321 2233334455556666666531 35899999999988876
Q ss_pred hhhc-----------------------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCC
Q 036359 497 KKLA-----------------------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPH 552 (657)
Q Consensus 497 e~l~-----------------------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~ 552 (657)
+++. ...+++++|.+++. |.|+|++|+|.+|+|++||.|+ +|..
T Consensus 214 ~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~---------- 281 (439)
T 3j2k_7 214 EQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNK---------- 281 (439)
T ss_pred cccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCC----------
Confidence 5211 13468999999975 8999999999999999999999 6653
Q ss_pred CCceeEEeeeeeccccccccc---ccEEEecCCCC--CCCCCeEEE
Q 036359 553 PMKELRVKGAYQHHKEIKAAQ---GIKITAQGLQD--AIAGTSLYV 593 (657)
Q Consensus 553 ~~~e~rVksi~~~~~~v~~a~---gv~i~~~gl~~--~~aG~~l~v 593 (657)
...+|++|++|+.++..|. .|.|.+.|++. +..|+.|+-
T Consensus 282 --~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~ 325 (439)
T 3j2k_7 282 --HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCD 325 (439)
T ss_pred --ceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecC
Confidence 4589999999999998773 58888999875 567777663
No 5
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=3.5e-32 Score=296.69 Aligned_cols=240 Identities=26% Similarity=0.305 Sum_probs=183.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc----------------ccccCceeeeccceeeecccccchhhccccccccCCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPG 361 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~----------------~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (657)
..|+|+||+|||||||+++|++.... ....+|+|..+....+... .+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------------~~~ 67 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----------------ARH 67 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----------------SCE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC----------------CeE
Confidence 35999999999999999999864211 1224677766544333322 245
Q ss_pred EEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHHHH
Q 036359 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKKAL 440 (657)
Q Consensus 362 l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~~L 440 (657)
++|||||||.+|..++.++++.+|++|||||+++|.++||.+||.++..+++| +|||+||||+.. ...
T Consensus 68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~------~~~----- 136 (397)
T 1d2e_A 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ------DSE----- 136 (397)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS------CHH-----
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC------CHH-----
Confidence 99999999999999999999999999999999999999999999999999999 689999999962 100
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhh----------hhhhhc----------
Q 036359 441 EQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKT----------MVKKLA---------- 500 (657)
Q Consensus 441 ~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~----------L~e~l~---------- 500 (657)
.+.....++...|...|+.. ..++|||+||+++.+ +.+++.
T Consensus 137 ---------~~~~~~~~~~~~l~~~~~~~----------~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 137 ---------MVELVELEIRELLTEFGYKG----------EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp ---------HHHHHHHHHHHHHHHTTSCT----------TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred ---------HHHHHHHHHHHHHHHcCCCc----------ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 11112234455566666542 357999999999653 333321
Q ss_pred --cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cc--
Q 036359 501 --FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QG-- 574 (657)
Q Consensus 501 --~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~g-- 574 (657)
...+++++|.++|.++|.|+|++|+|.+|+|++||.|+ .|... ....+|++|++|+.++..| +|
T Consensus 198 ~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~----------~~~~~V~~i~~~~~~~~~a~aG~~ 267 (397)
T 1d2e_A 198 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSK----------NIRTVVTGIEMFHKSLDRAEAGDN 267 (397)
T ss_dssp CCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTE----------EEEEEEEEEEETTEEESEEETTCE
T ss_pred CCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCC----------CeEEEEEEEEECCcccCEecCCCc
Confidence 13478999999999999999999999999999999998 44321 2467899999999999877 34
Q ss_pred cEEEecCC--CCCCCCCeEEE
Q 036359 575 IKITAQGL--QDAIAGTSLYV 593 (657)
Q Consensus 575 v~i~~~gl--~~~~aG~~l~v 593 (657)
+.+.++|+ .++..|+.|+-
T Consensus 268 v~~~l~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 268 LGALVRGLKREDLRRGLVMAK 288 (397)
T ss_dssp EEEEESSCCGGGCCTTCEEES
T ss_pred eEEEecccchhccCceeEEeC
Confidence 77888888 45789998874
No 6
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.7e-33 Score=315.14 Aligned_cols=240 Identities=23% Similarity=0.312 Sum_probs=165.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc-------------------------------ccccccCceeeeccceeeeccccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPVENIQ 345 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~-------------------------------v~~~~~~GiT~~ig~~~~~~~~~~ 345 (657)
.+.|+|+||+|||||||+++|++.. +...+.+|||++++...+.+.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~--- 253 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD--- 253 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC---
Confidence 3459999999999999999996421 111224566666655555443
Q ss_pred chhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCC-------chhHHHHHHHHHhcCCc-eEE
Q 036359 346 KRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-------KPQTIESLDLLKERSVD-FII 417 (657)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~qt~e~l~~l~~~~vP-iIv 417 (657)
.+.|+|||||||.+|..++.+++..+|++|||||+++|. ++||++|+.++..+++| +||
T Consensus 254 -------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 254 -------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp ------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred -------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence 245899999999999999999999999999999999864 89999999999999998 999
Q ss_pred EecccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhhccccCcceeEEeccchhhhhhh
Q 036359 418 ALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQF-KEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV 496 (657)
Q Consensus 418 vlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L-~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~ 496 (657)
|+||||++. |.. ..+......+...| ...|+.. ..++|||+||++|.++.
T Consensus 321 viNKiDl~~-~~~------------------~~~~~i~~el~~~l~~~~g~~~----------~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 321 SVNKLDLMS-WSE------------------DRFQEIKNIVSDFLIKMVGFKT----------SNVHFVPISAISGTNLI 371 (592)
T ss_dssp EEECGGGGT-TCH------------------HHHHHHHHHHHHHHTTTSCCCG----------GGEEEEEECSSSCSSSC
T ss_pred EEecccccc-ccH------------------HHHHHHHHHHHHHHHHhhCCCc----------cceEEEEEecccCcccc
Confidence 999999963 321 11222234444555 5556543 35799999999988765
Q ss_pred --------------hh---hc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccC
Q 036359 497 --------------KK---LA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLT 550 (657)
Q Consensus 497 --------------e~---l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~ 550 (657)
.+ |. ...+|+++|.++|.+ |.|+|++|+|.+|+|++||.|+ +|..
T Consensus 372 e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~-------- 442 (592)
T 3mca_A 372 QKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ-------- 442 (592)
T ss_dssp SCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT--------
T ss_pred cccccccccccchHHHHHHHHhhccccccccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCC--------
Confidence 22 21 134689999999999 9999999999999999999999 6543
Q ss_pred CCCCceeEEeeeeecccccc-cc-cc--cEEEecCCCC--CCCCCeEEEc
Q 036359 551 PHPMKELRVKGAYQHHKEIK-AA-QG--IKITAQGLQD--AIAGTSLYVV 594 (657)
Q Consensus 551 p~~~~e~rVksi~~~~~~v~-~a-~g--v~i~~~gl~~--~~aG~~l~v~ 594 (657)
...+|++|++|+..+. .| +| |.|.+.|++. +..|++|+-.
T Consensus 443 ----~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~ 488 (592)
T 3mca_A 443 ----EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNY 488 (592)
T ss_dssp ----EEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECS
T ss_pred ----ceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccC
Confidence 3579999999999998 66 34 7888899864 6889988743
No 7
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.98 E-value=7.4e-32 Score=294.76 Aligned_cols=242 Identities=22% Similarity=0.287 Sum_probs=183.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccc-----------------cccCceeeeccceeeecccccchhhccccccccCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQE-----------------GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKV 359 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~-----------------~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 359 (657)
...|+|+||+|||||||+++|++..... ...+|+|..+....+.+ ..
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----------------~~ 74 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET----------------AK 74 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC----------------SS
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc----------------CC
Confidence 3459999999999999999998742111 11345555443332322 22
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHH
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
..++|||||||.+|..++.+++..+|++|||||+++|..+||.++|.++..+++| +|+|+||||+.. ...
T Consensus 75 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~------~~~--- 145 (405)
T 2c78_A 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD------DPE--- 145 (405)
T ss_dssp CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC------CHH---
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC------cHH---
Confidence 4599999999999999999999999999999999999999999999999999999 899999999962 111
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhh------------------hhhhhc
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKT------------------MVKKLA 500 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~------------------L~e~l~ 500 (657)
.+......+...+...|+.. ..++++|+||+++.+ +.+++.
T Consensus 146 -----------~~~~~~~~~~~~l~~~~~~~----------~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~ 204 (405)
T 2c78_A 146 -----------LLDLVEMEVRDLLNQYEFPG----------DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLD 204 (405)
T ss_dssp -----------HHHHHHHHHHHHHHHTTSCT----------TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHhcccc----------cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHH
Confidence 11111223444555555432 357999999999876 433321
Q ss_pred ------------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccc
Q 036359 501 ------------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHK 567 (657)
Q Consensus 501 ------------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~ 567 (657)
...+++++|.++|.++|.|+|++|+|.+|+|++||.|+ .|.... ....+|++|++|+.
T Consensus 205 ~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~---------~~~~~V~~i~~~~~ 275 (405)
T 2c78_A 205 AIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPE---------TRKTVVTGVEMHRK 275 (405)
T ss_dssp HHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSS---------CEEEEEEEEEETTE
T ss_pred HHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCC---------eeeEEEEEEEECCc
Confidence 13468999999999999999999999999999999998 554311 14689999999999
Q ss_pred cccccc-c--cEEEecCC--CCCCCCCeEEE
Q 036359 568 EIKAAQ-G--IKITAQGL--QDAIAGTSLYV 593 (657)
Q Consensus 568 ~v~~a~-g--v~i~~~gl--~~~~aG~~l~v 593 (657)
++..|. | +.+.+.|+ .++..|+.|+-
T Consensus 276 ~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~ 306 (405)
T 2c78_A 276 TLQEGIAGDNVGVLLRGVSREEVERGQVLAK 306 (405)
T ss_dssp EESEEETTCEEEEEESSCCTTTCCTTCEEES
T ss_pred ccCEEcCCCEEEEEECCCcHhhcCceEEEEc
Confidence 988773 4 77888887 56789998874
No 8
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.98 E-value=8.3e-32 Score=298.95 Aligned_cols=241 Identities=24% Similarity=0.323 Sum_probs=186.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc--cc-----------------------------ccccCceeeeccceeeeccccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPVENIQ 345 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~--v~-----------------------------~~~~~GiT~~ig~~~~~~~~~~ 345 (657)
.+.|+|+||+|||||||+++|++.. +. ..+.+|+|.+++...+.+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-- 84 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-- 84 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC--
Confidence 3459999999999999999998541 11 11236777776665554432
Q ss_pred chhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCch-------hHHHHHHHHHhcCCc-eEE
Q 036359 346 KRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKP-------QTIESLDLLKERSVD-FII 417 (657)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~-------qt~e~l~~l~~~~vP-iIv 417 (657)
+.|+|||||||.+|..++.++++.+|++|||||+++|..+ ||.+|+.++..+++| +||
T Consensus 85 --------------~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iiv 150 (458)
T 1f60_A 85 --------------YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIV 150 (458)
T ss_dssp --------------EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred --------------ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEE
Confidence 3499999999999999999999999999999999998766 999999999999997 999
Q ss_pred EecccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh
Q 036359 418 ALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK 497 (657)
Q Consensus 418 vlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e 497 (657)
|+||||+. +|.. ..|......+...|...|+.. ..++|||+||++|.++.+
T Consensus 151 viNK~Dl~-~~~~------------------~~~~~i~~~~~~~l~~~g~~~----------~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 151 AVNKMDSV-KWDE------------------SRFQEIVKETSNFIKKVGYNP----------KTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp EEECGGGG-TTCH------------------HHHHHHHHHHHHHHHHHTCCG----------GGCCEEECCTTTCBTTTB
T ss_pred EEEccccc-cCCH------------------HHHHHHHHHHHHHHHHcCCCc----------cCceEEEeecccCcCccc
Confidence 99999997 2321 112222334555555566543 247899999999877643
Q ss_pred h---------------------------hc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-ecc
Q 036359 498 K---------------------------LA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPI 541 (657)
Q Consensus 498 ~---------------------------l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~ 541 (657)
. |. ...+++++|.++|.++|.|+|++|+|.+|+|++||.|+ +|.
T Consensus 202 ~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~ 281 (458)
T 1f60_A 202 ATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA 281 (458)
T ss_dssp CCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETT
T ss_pred ccccCchhhcccccccccccchHHHHHHhhccCCCcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCC
Confidence 2 11 13468999999999999999999999999999999998 665
Q ss_pred ccchhhccCCCCCceeEEeeeeeccccccccc-c--cEEEecCCC--CCCCCCeEEEc
Q 036359 542 DTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G--IKITAQGLQ--DAIAGTSLYVV 594 (657)
Q Consensus 542 ~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g--v~i~~~gl~--~~~aG~~l~v~ 594 (657)
. ..++|++|++|+..+..|. | +.|.+.|++ ++..|+.|.-.
T Consensus 282 ~------------~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~ 327 (458)
T 1f60_A 282 G------------VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDA 327 (458)
T ss_dssp T------------EEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTCEEEET
T ss_pred C------------ceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCceeEEecC
Confidence 3 4579999999998888763 4 888888984 57889988764
No 9
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.97 E-value=7e-32 Score=300.27 Aligned_cols=240 Identities=23% Similarity=0.402 Sum_probs=166.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc--c-----------------------------cccccCceeeeccceeeecccccc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPVENIQK 346 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~--v-----------------------------~~~~~~GiT~~ig~~~~~~~~~~~ 346 (657)
+.|+|+||+|||||||+++|+... + ...+.+|+|++++..++.+..
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~--- 120 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH--- 120 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS---
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC---
Confidence 459999999999999999996421 1 112346777777766555432
Q ss_pred hhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCc-------hhHHHHHHHHHhcCCc-eEEE
Q 036359 347 RTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIK-------PQTIESLDLLKERSVD-FIIA 418 (657)
Q Consensus 347 ~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~-------~qt~e~l~~l~~~~vP-iIvv 418 (657)
..|+|||||||.+|..++.++++.+|++|||||+++|++ +||++|+.++..+++| +|||
T Consensus 121 -------------~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivv 187 (467)
T 1r5b_A 121 -------------RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVV 187 (467)
T ss_dssp -------------EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEE
T ss_pred -------------eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 348999999999999999999999999999999999863 7999999999999998 9999
Q ss_pred eccccccc-CcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-CCchhhhhhccccCcceeEEeccchhhhhhh
Q 036359 419 LSKADKLY-GWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQ-GLNTELYYKNKEMGKTFSIVPTSAIRHKTMV 496 (657)
Q Consensus 419 lNKiDl~~-~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~-G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~ 496 (657)
+||||+.. +|.. +.|.....++...|... |+.. +..++|||+||++|.++.
T Consensus 188 iNK~Dl~~~~~~~------------------~~~~~i~~e~~~~l~~~~g~~~---------~~~~~~i~vSA~~g~~i~ 240 (467)
T 1r5b_A 188 INKMDEPSVQWSE------------------ERYKECVDKLSMFLRRVAGYNS---------KTDVKYMPVSAYTGQNVK 240 (467)
T ss_dssp EECTTSTTCSSCH------------------HHHHHHHHHHHHHHHHHHCCCH---------HHHEEEEECBTTTTBTTS
T ss_pred EECccCCCccccH------------------HHHHHHHHHHHHHHHHhcCCCc---------cCCceEEecccccccccc
Confidence 99999963 3421 12222334455556555 6642 125799999999988764
Q ss_pred hhh-----------------c--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccC
Q 036359 497 KKL-----------------A--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLT 550 (657)
Q Consensus 497 e~l-----------------~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~ 550 (657)
+.+ . ...+|+++|.+++. +.|+|++|+|.+|+|++||.|+ +|..
T Consensus 241 ~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~-------- 310 (467)
T 1r5b_A 241 DRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPIN-------- 310 (467)
T ss_dssp SCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTT--------
T ss_pred cccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCC--------
Confidence 422 1 14578999999976 6899999999999999999999 6653
Q ss_pred CCCCceeEEeeeeec-cccccccc-c--cEEEecC-CCCCCCCCeEEEc
Q 036359 551 PHPMKELRVKGAYQH-HKEIKAAQ-G--IKITAQG-LQDAIAGTSLYVV 594 (657)
Q Consensus 551 p~~~~e~rVksi~~~-~~~v~~a~-g--v~i~~~g-l~~~~aG~~l~v~ 594 (657)
...+|++|++| +.++..|. | |.|.+.| ..++..|+.|+..
T Consensus 311 ----~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g~~~~i~rG~vl~~~ 355 (467)
T 1r5b_A 311 ----QTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLTST 355 (467)
T ss_dssp ----EEEEEEEEECTTCCEESEEETTCEEEEEEESCCTTCCTTCEEECS
T ss_pred ----eeEEEEEEeccCCcEeeEEcCCCEEEEEEeccHhhCCceEEEeCC
Confidence 45789999998 88888763 4 7777787 5668899988743
No 10
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.97 E-value=2.8e-32 Score=304.44 Aligned_cols=237 Identities=24% Similarity=0.353 Sum_probs=182.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCc-------ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTN-------VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDT 367 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~-------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDT 367 (657)
++++.|+++||+|||||||+++|++.. +..+..+|+|+++++.++.+.. ..++||||
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------------~~i~iiDt 80 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN----------------YRITLVDA 80 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT----------------EEEEECCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC----------------EEEEEEEC
Confidence 566789999999999999999999876 3456678899988887776542 24999999
Q ss_pred CCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHH
Q 036359 368 PGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDV 447 (657)
Q Consensus 368 PGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~ 447 (657)
|||.+|..++.+++..+|++|||||+++|+++||++++.++..+++|+|||+||||+.. .
T Consensus 81 PGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~-------~------------- 140 (482)
T 1wb1_A 81 PGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------T------------- 140 (482)
T ss_dssp SSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------H-------------
T ss_pred CChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc-------c-------------
Confidence 99999999999999999999999999999999999999999999999999999999963 0
Q ss_pred HHHHHHHHHHHHHHHHHc-CCchhhhhhccccCcceeEEeccchhhhhhhhhhc--------------cccccceeEEEE
Q 036359 448 EDEFKMRLRNIITQFKEQ-GLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA--------------FRNEVQCTILEV 512 (657)
Q Consensus 448 ~~~~~~~~~~ii~~L~~~-G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~--------------~~~~~~~~Vlev 512 (657)
+.+......+...|... ++. .+++||+||++|.++.+++. ...+++++|.++
T Consensus 141 -~~~~~~~~~l~~~l~~~~~~~------------~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v 207 (482)
T 1wb1_A 141 -EEIKRTEMIMKSILQSTHNLK------------NSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHA 207 (482)
T ss_dssp -HHHHHHHHHHHHHHHHSSSGG------------GCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCE
T ss_pred -hhHHHHHHHHHHHHhhhcccc------------cceEEEEECcCCCCHHHHHHHHHHhhcCccccccccccccccceeE
Confidence 11112223344444443 332 47899999999888765431 123688999999
Q ss_pred EeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEecCCCC--CC
Q 036359 513 KVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQGLQD--AI 586 (657)
Q Consensus 513 ~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~gl~~--~~ 586 (657)
|.++|.|+|++|+|.+|+|++||.|+ +|.. ...+|++|++++..+..|. .+.+.+.|++. +.
T Consensus 208 ~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~------------~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~ 275 (482)
T 1wb1_A 208 FPIKGAGTVVTGTINKGIVKVGDELKVLPIN------------MSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIY 275 (482)
T ss_dssp ECCSSCCCEECCCCCBSCCCSSEEECCTTTC------------CCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCC
T ss_pred EEecCCceEEEEEEEEeEEeeCCEEEECCCC------------cEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhcc
Confidence 99999999999999999999999998 5542 3478999999999988663 47888889764 67
Q ss_pred CCCeEE
Q 036359 587 AGTSLY 592 (657)
Q Consensus 587 aG~~l~ 592 (657)
.|+.|+
T Consensus 276 ~Gdvl~ 281 (482)
T 1wb1_A 276 RGXILT 281 (482)
T ss_dssp SSCBCC
T ss_pred ccceEe
Confidence 899884
No 11
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.97 E-value=7e-31 Score=289.76 Aligned_cols=241 Identities=27% Similarity=0.381 Sum_probs=180.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc--cc-----------------------------ccccCceeeeccceeeecccccc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPVENIQK 346 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~--v~-----------------------------~~~~~GiT~~ig~~~~~~~~~~~ 346 (657)
..|+|+||+|||||||+++|++.. +. .++.+|+|.+++...+.+.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~---- 82 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK---- 82 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS----
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC----
Confidence 459999999999999999998541 11 1224567766665554433
Q ss_pred hhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-------CchhHHHHHHHHHhcCCc-eEEE
Q 036359 347 RTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------IKPQTIESLDLLKERSVD-FIIA 418 (657)
Q Consensus 347 ~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-------~~~qt~e~l~~l~~~~vP-iIvv 418 (657)
...++|||||||.+|..++.++++.+|++|||||+++| +.+||.+|+.++..+++| +|||
T Consensus 83 ------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivv 150 (435)
T 1jny_A 83 ------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVA 150 (435)
T ss_dssp ------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEE
T ss_pred ------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEE
Confidence 24599999999999999999999999999999999999 889999999999999985 9999
Q ss_pred eccccccc-CcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh
Q 036359 419 LSKADKLY-GWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK 497 (657)
Q Consensus 419 lNKiDl~~-~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e 497 (657)
+||||+.. +|.. ..|......+...+...|+.. ..+++||+||++|.++.+
T Consensus 151 iNK~Dl~~~~~~~------------------~~~~~~~~~i~~~~~~~~~~~----------~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 151 VNKMDLTEPPYDE------------------KRYKEIVDQVSKFMRSYGFNT----------NKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp EECGGGSSSTTCH------------------HHHHHHHHHHHHHHHHTTCCC----------TTCEEEECBTTTTBTTTB
T ss_pred EEcccCCCccccH------------------HHHHHHHHHHHHHHHHcCCCc----------CCceEEEeecccCccccc
Confidence 99999973 1221 112223345555666666542 257999999999887642
Q ss_pred ---------------hhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCC
Q 036359 498 ---------------KLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHP 553 (657)
Q Consensus 498 ---------------~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~ 553 (657)
.|. ...+++++|.++|.++|.|+|++|+|.+|+|++||.|+ +|..
T Consensus 203 ~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~----------- 271 (435)
T 1jny_A 203 KSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG----------- 271 (435)
T ss_dssp CCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTT-----------
T ss_pred cccccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCce-----------
Confidence 221 12468899999999999999999999999999999998 6642
Q ss_pred CceeEEeeeeecccccccc-cc--cEEEecCC--CCCCCCCeEEEc
Q 036359 554 MKELRVKGAYQHHKEIKAA-QG--IKITAQGL--QDAIAGTSLYVV 594 (657)
Q Consensus 554 ~~e~rVksi~~~~~~v~~a-~g--v~i~~~gl--~~~~aG~~l~v~ 594 (657)
...+|++|++|+.++..| +| +.|.+.|+ .++..|++|+..
T Consensus 272 -~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~ 316 (435)
T 1jny_A 272 -KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHP 316 (435)
T ss_dssp -EEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECT
T ss_pred -eEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCC
Confidence 468999999999999877 35 67777776 457899998743
No 12
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=298.81 Aligned_cols=242 Identities=23% Similarity=0.323 Sum_probs=185.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccc-------------------------------cccCceeeeccceeeecccc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQE-------------------------------GEAGGITQQIGATYFPVENI 344 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~-------------------------------~~~~GiT~~ig~~~~~~~~~ 344 (657)
....|+|+||+|||||||+++|++..... .+.+|+|.+++..++.+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-- 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC--
Confidence 45679999999999999999998653211 112466666655555443
Q ss_pred cchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-------CchhHHHHHHHHHhcCCc-eE
Q 036359 345 QKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------IKPQTIESLDLLKERSVD-FI 416 (657)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-------~~~qt~e~l~~l~~~~vP-iI 416 (657)
...|+|||||||.+|..++..+++.+|++|||||+++| +.+||.+|+.++..+++| +|
T Consensus 244 --------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 244 --------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLI 309 (611)
T ss_dssp --------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEE
T ss_pred --------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 24599999999999999999999999999999999987 578999999999999987 99
Q ss_pred EEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhh
Q 036359 417 IALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMV 496 (657)
Q Consensus 417 vvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~ 496 (657)
||+||||+.. |.. ..+......+...+...|+.. ..++|||+||++|.++.
T Consensus 310 VVvNKiDl~~-~~~------------------~~~~ei~~~l~~~l~~~g~~~----------~~~~~i~vSA~tG~gI~ 360 (611)
T 3izq_1 310 IAMNKMDNVD-WSQ------------------QRFEEIKSKLLPYLVDIGFFE----------DNINWVPISGFSGEGVY 360 (611)
T ss_dssp EEEECTTTTT-TCH------------------HHHHHHHHHHHHHHHHHTCCG----------GGCEEEECCTTTCTTTS
T ss_pred EEEecccccc-hhH------------------HHHHHHHHHHHHHHHhhcccc----------cCccEEeeecccCCCcc
Confidence 9999999963 321 112222334555556666543 35799999999988765
Q ss_pred hh------------------hc--------------cccccceeEEEEEeec---CceeEEEEEEEeeeecCCCEEE-ec
Q 036359 497 KK------------------LA--------------FRNEVQCTILEVKVCE---GYGTTIDVVLINGVLHEGDKIV-EP 540 (657)
Q Consensus 497 e~------------------l~--------------~~~~~~~~Vlev~~~~---g~GtVv~g~v~~G~Lk~Gd~I~-gp 540 (657)
++ |. ...|++++|.+++.+. |.|+|++|+|.+|+|++||.|+ +|
T Consensus 361 el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p 440 (611)
T 3izq_1 361 KIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYP 440 (611)
T ss_dssp SCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETT
T ss_pred ccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEec
Confidence 32 11 1236899999999998 6899999999999999999999 66
Q ss_pred cccchhhccCCCCCceeEEeeeeec--------ccccccc-c--ccEEEecCC--CCCCCCCeEEEc
Q 036359 541 IDTKIQALLTPHPMKELRVKGAYQH--------HKEIKAA-Q--GIKITAQGL--QDAIAGTSLYVV 594 (657)
Q Consensus 541 ~~~~Vr~ll~p~~~~e~rVksi~~~--------~~~v~~a-~--gv~i~~~gl--~~~~aG~~l~v~ 594 (657)
.. ...+|++|++| |.++..| + .|.|.+.|+ .++..|++|+-.
T Consensus 441 ~~------------~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~ 495 (611)
T 3izq_1 441 SE------------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASV 495 (611)
T ss_dssp TT------------EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCS
T ss_pred CC------------ceEEEEEEEEcccccccccccccceecCCCcceEEeeeccHhhCcceEEccCC
Confidence 54 35789999999 4777766 3 477888887 567889988743
No 13
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.97 E-value=1.7e-30 Score=290.39 Aligned_cols=241 Identities=23% Similarity=0.334 Sum_probs=181.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc-------------------------------ccccccCceeeeccceeeeccccc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN-------------------------------VQEGEAGGITQQIGATYFPVENIQ 345 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~-------------------------------v~~~~~~GiT~~ig~~~~~~~~~~ 345 (657)
...|+|+||+|+|||||+++|++.. ....+.+|+|..+....+.+.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--- 109 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH--- 109 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS---
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC---
Confidence 3459999999999999999997541 112233566666665555443
Q ss_pred chhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCC-------CchhHHHHHHHHHhcCCc-eEE
Q 036359 346 KRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDG-------IKPQTIESLDLLKERSVD-FII 417 (657)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g-------~~~qt~e~l~~l~~~~vP-iIv 417 (657)
.+.|+|||||||.+|..++..++..+|++|||||+++| +.+||.+++.++..+++| +||
T Consensus 110 -------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIv 176 (483)
T 3p26_A 110 -------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 176 (483)
T ss_dssp -------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEE
T ss_pred -------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEE
Confidence 24599999999999999999999999999999999998 678999999999999976 999
Q ss_pred EecccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh
Q 036359 418 ALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK 497 (657)
Q Consensus 418 vlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e 497 (657)
|+||||+.. |.. ..+......+...|...|+.. ..++|||+||++|.++.+
T Consensus 177 viNK~Dl~~-~~~------------------~~~~~i~~~~~~~l~~~g~~~----------~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 177 AMNKMDNVD-WSQ------------------QRFEEIKSKLLPYLVDIGFFE----------DNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EEECGGGGT-TCH------------------HHHHHHHHHHHHHHHHHTCCG----------GGEEEEECCSSSCTTSSS
T ss_pred EEECcCccc-chH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEEeeecCCCccc
Confidence 999999963 321 112222334445555666543 358999999999877642
Q ss_pred ------------------hhc--------------cccccceeEEEEEeec---CceeEEEEEEEeeeecCCCEEE-ecc
Q 036359 498 ------------------KLA--------------FRNEVQCTILEVKVCE---GYGTTIDVVLINGVLHEGDKIV-EPI 541 (657)
Q Consensus 498 ------------------~l~--------------~~~~~~~~Vlev~~~~---g~GtVv~g~v~~G~Lk~Gd~I~-gp~ 541 (657)
.|. ...|++++|.+++.+. |.|+|++|+|.+|+|++||.|+ +|.
T Consensus 228 l~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~ 307 (483)
T 3p26_A 228 IEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS 307 (483)
T ss_dssp SCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETT
T ss_pred cCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCC
Confidence 111 1347899999999988 5999999999999999999999 775
Q ss_pred ccchhhccCCCCCceeEEeeeeecc--------cccccc-c--ccEEEecCC--CCCCCCCeEEEc
Q 036359 542 DTKIQALLTPHPMKELRVKGAYQHH--------KEIKAA-Q--GIKITAQGL--QDAIAGTSLYVV 594 (657)
Q Consensus 542 ~~~Vr~ll~p~~~~e~rVksi~~~~--------~~v~~a-~--gv~i~~~gl--~~~~aG~~l~v~ 594 (657)
. ...+|++|++|+ .++..| + .|.|.+.|+ .++..|++|+..
T Consensus 308 ~------------~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~ 361 (483)
T 3p26_A 308 E------------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASV 361 (483)
T ss_dssp T------------EEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECT
T ss_pred C------------CeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccccCCceEEEEcC
Confidence 4 357899999994 778766 3 477888887 567899988744
No 14
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.97 E-value=2.8e-30 Score=279.15 Aligned_cols=224 Identities=18% Similarity=0.202 Sum_probs=174.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
+|+++||+|||||||+++|+ .+|+|++++...+.+.. +.++|||||||.+|...+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~----------------~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG----------------RNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS----------------SEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC----------------eEEEEEECCChHHHHHHHH
Confidence 59999999999999999998 46788887776665532 3499999999999999999
Q ss_pred cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCce-EEEec-ccccccCcccCCCccHHHHHHhhhHHHHHHHHHHHH
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDF-IIALS-KADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLR 456 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPi-IvvlN-KiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~ 456 (657)
++++.+|++||||| +.|+.+||.+++.++..+++|. |+|+| |||+ .. . .+.....
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~------~---------------~~~~~~~ 135 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM------H---------------AIDELKA 135 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH------H---------------HHHHHHH
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH------H---------------HHHHHHH
Confidence 99999999999999 9999999999999999999997 99999 9998 40 0 0011112
Q ss_pred HHHHHHHHcCCchhhhhhccccCcceeEEe--ccchh---hhhhhhhhc----------------cccccceeEEEEEee
Q 036359 457 NIITQFKEQGLNTELYYKNKEMGKTFSIVP--TSAIR---HKTMVKKLA----------------FRNEVQCTILEVKVC 515 (657)
Q Consensus 457 ~ii~~L~~~G~~~~~~~~~~~~~~~v~iVp--vSA~t---~~~L~e~l~----------------~~~~~~~~Vlev~~~ 515 (657)
.+...+...++ ..++++| +||++ +.++.+++. ...+++++|.++|.+
T Consensus 136 ~i~~~l~~~~~------------~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~ 203 (370)
T 2elf_A 136 KLKVITSGTVL------------QDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNV 203 (370)
T ss_dssp HHHHHTTTSTT------------TTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECC
T ss_pred HHHHHHHhcCC------------CceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEc
Confidence 23233322221 3579999 99999 887655432 111245559999999
Q ss_pred cCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecccccccc-cc--cEEEecCCC--CCCCCC
Q 036359 516 EGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA-QG--IKITAQGLQ--DAIAGT 589 (657)
Q Consensus 516 ~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a-~g--v~i~~~gl~--~~~aG~ 589 (657)
+|.|+|++|+|.+|+|++||.|+ +|.. ...+|++|++++.++..| +| +.+.+.|++ ++..|+
T Consensus 204 ~~~G~v~~g~v~~G~l~~gd~v~~~p~~------------~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gd 271 (370)
T 2elf_A 204 TGKGCVVLGVVKQGISKDKDKTKIFPLD------------RDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGF 271 (370)
T ss_dssp C---CEEEEEEEESEEETTCEEEEETTT------------EEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTC
T ss_pred CCCceEEEEEEECCEEeeCCEEEECCCC------------cEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCce
Confidence 99999999999999999999998 6643 468999999999998877 45 677777874 578999
Q ss_pred eEEE
Q 036359 590 SLYV 593 (657)
Q Consensus 590 ~l~v 593 (657)
+|+.
T Consensus 272 vl~~ 275 (370)
T 2elf_A 272 IISD 275 (370)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9985
No 15
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.97 E-value=2.1e-30 Score=307.31 Aligned_cols=242 Identities=23% Similarity=0.296 Sum_probs=181.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc----------------cccccCceeeeccceeeecccccchhhccccccccCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV----------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKV 359 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v----------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 359 (657)
....|+|+||+|||||||+++|++... .....+|+|+.+....+... .
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~----------------~ 358 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP----------------T 358 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS----------------S
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC----------------C
Confidence 345599999999999999999986421 11234666666554433322 2
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccccCcccCCCccHHH
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
..++|||||||.+|..++.+++..+|++|||||+++|.++||.+||.++...++| +|||+||||+.. ...
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~------d~e--- 429 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD------DEE--- 429 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC------CHH---
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc------chh---
Confidence 4599999999999999999999999999999999999999999999999999999 799999999963 100
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhh--------hhhhhhhc----------
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRH--------KTMVKKLA---------- 500 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~--------~~L~e~l~---------- 500 (657)
.+.....++...|...|+.. ..++|||+||++| .++.+++.
T Consensus 430 -----------~le~i~eEi~elLk~~G~~~----------~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~ 488 (1289)
T 3avx_A 430 -----------LLELVEMEVRELLSQYDFPG----------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE 488 (1289)
T ss_dssp -----------HHHHHHHHHHHHHHHTTSCT----------TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred -----------hHHHHHHHHHHHHHhccccc----------cceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCc
Confidence 11112234455566666532 3589999999998 34443321
Q ss_pred --cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc-c--
Q 036359 501 --FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ-G-- 574 (657)
Q Consensus 501 --~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~-g-- 574 (657)
...|++++|.++|.++|.|+|++|+|.+|+|++||.|+ +|... ....+|++|++|+.++..|. |
T Consensus 489 r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~----------~~~~kVksI~~~~~~v~eA~AGd~ 558 (1289)
T 3avx_A 489 RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKE----------TQKSTCTGVEMFRKLLDEGRAGEN 558 (1289)
T ss_dssp CGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSS----------CEEEEEEEEECSSCEESEEETTCE
T ss_pred cccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCC----------ceeEEEEEEeecCceeeEEecCCc
Confidence 13468999999999999999999999999999999998 65431 14589999999999998773 4
Q ss_pred cEEEecCC--CCCCCCCeEEE
Q 036359 575 IKITAQGL--QDAIAGTSLYV 593 (657)
Q Consensus 575 v~i~~~gl--~~~~aG~~l~v 593 (657)
|.|.+.|+ .++..|++|+-
T Consensus 559 Vgl~L~GI~~~dI~RGdVL~~ 579 (1289)
T 3avx_A 559 VGVLLRGIKREEIERGQVLAK 579 (1289)
T ss_dssp EEEEESSCCGGGCCTTCEEES
T ss_pred ceeEeeecchhcCCcccEEec
Confidence 78888888 45789998873
No 16
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.97 E-value=6e-30 Score=289.49 Aligned_cols=263 Identities=19% Similarity=0.243 Sum_probs=181.0
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCC----------------------cccccccCceeeeccceeeecccccchhh
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGT----------------------NVQEGEAGGITQQIGATYFPVENIQKRTE 349 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~----------------------~v~~~~~~GiT~~ig~~~~~~~~~~~~~~ 349 (657)
..+.|| |+|+||+|||||||+++|+.. ....++.+|||+......+.|..
T Consensus 28 ~~r~RN--iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~------ 99 (548)
T 3vqt_A 28 AARRRT--FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD------ 99 (548)
T ss_dssp HHTEEE--EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT------
T ss_pred ccccce--EEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC------
Confidence 456788 999999999999999999621 11234567888777777776653
Q ss_pred ccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcc
Q 036359 350 KLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWK 429 (657)
Q Consensus 350 ~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~ 429 (657)
+.|+|||||||.+|...+.++++.+|++|+|||+..|+++||...|+++..+++|+|+|+||||+.
T Consensus 100 ----------~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~---- 165 (548)
T 3vqt_A 100 ----------RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE---- 165 (548)
T ss_dssp ----------EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC----
T ss_pred ----------EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch----
Confidence 359999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cCCCccHHHHHHhhhHHHHH-------------------------------------------------HHHH-------
Q 036359 430 SCKNAPIKKALEQQSKDVED-------------------------------------------------EFKM------- 453 (657)
Q Consensus 430 ~~~~~~~~~~L~~q~~~~~~-------------------------------------------------~~~~------- 453 (657)
++++...+.+....+.. .+..
T Consensus 166 ---~ad~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (548)
T 3vqt_A 166 ---ALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAE 242 (548)
T ss_dssp ---CCCHHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHH
T ss_pred ---hcchhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHH
Confidence 77887777654332210 0000
Q ss_pred HHHHHHHHHHHcCC--chhhhhhccccCcceeEEeccchhhhhhhhhhc-------c--------------ccccceeEE
Q 036359 454 RLRNIITQFKEQGL--NTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-------F--------------RNEVQCTIL 510 (657)
Q Consensus 454 ~~~~ii~~L~~~G~--~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-------~--------------~~~~~~~Vl 510 (657)
........+...+. ..+.+. -+..+|++..||+++.++..+|. . ..+|.+.|+
T Consensus 243 ~~~~~~~l~~~~~~~~~~e~~~----~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vf 318 (548)
T 3vqt_A 243 QLRMDLALLEEAGTPFDEERYL----KGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVF 318 (548)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHH----TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEE
T ss_pred HhhhHHHHHhhccCchhHHHHH----hCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEE
Confidence 00011111111111 111111 14678999999999766544432 1 235788899
Q ss_pred EEEee---cCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEecCC
Q 036359 511 EVKVC---EGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITAQGL 582 (657)
Q Consensus 511 ev~~~---~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~~gl 582 (657)
.+..+ +..|.+.+++|++|+|+.|+.|.... ..+..+|..++.. ..++..+ +|-.+++.||
T Consensus 319 Ki~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~-----------~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl 387 (548)
T 3vqt_A 319 KIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHR-----------TGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNH 387 (548)
T ss_dssp EEECC-------CEEEEEEEESCEETTCEEEETT-----------TTEEEECTTCEECCCSSCCSSCEECTTCEEEEECS
T ss_pred EEEccCCcCCCCeEEEEEEecceecCCCEEEeec-----------cccccccchhhhhccccccccCEEecCCEEEecCC
Confidence 88776 78999999999999999999998111 1234455555432 2355555 5888889999
Q ss_pred CCCCCCCeEEEc
Q 036359 583 QDAIAGTSLYVV 594 (657)
Q Consensus 583 ~~~~aG~~l~v~ 594 (657)
..+..|++|+..
T Consensus 388 ~~~~~GDTl~~~ 399 (548)
T 3vqt_A 388 GTIKIGDTFTES 399 (548)
T ss_dssp SCCCTTCEEESS
T ss_pred ccCccCCEecCC
Confidence 999999998743
No 17
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.97 E-value=6.4e-30 Score=279.88 Aligned_cols=260 Identities=23% Similarity=0.259 Sum_probs=182.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccch----h-hccc-ccccc-CCCcEEEEeC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQKR----T-EKLN-ADAKL-KVPGLLVVDT 367 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~~----~-~~~~-~~~~~-~~~~l~iIDT 367 (657)
..|+|+||+|||||||+++|++.. +.....+|||+++++..+.+...... + ..+. .+..+ ....++||||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 459999999999999999999653 44555689999888765554321000 0 0000 00000 0135999999
Q ss_pred CCCCcchhhhhcCCCCCceeeEeecccCCC-chhHHHHHHHHHhcCC-ceEEEecccccccCcccCCCccHHHHHHhhhH
Q 036359 368 PGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKERSV-DFIIALSKADKLYGWKSCKNAPIKKALEQQSK 445 (657)
Q Consensus 368 PGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~~~~v-PiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~ 445 (657)
|||.+|..++.+++..+|++|||||+++|+ ++||++||.++..+++ |+|||+||||+.. .+
T Consensus 91 PGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~-------~~---------- 153 (410)
T 1kk1_A 91 PGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD-------KE---------- 153 (410)
T ss_dssp SSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC-------HH----------
T ss_pred CChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC-------HH----------
Confidence 999999999999999999999999999998 9999999999988887 5999999999963 10
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------cccccceeEEEEE
Q 036359 446 DVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRNEVQCTILEVK 513 (657)
Q Consensus 446 ~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~~~~~~Vlev~ 513 (657)
.....+..+...|... +...+++||+||+++.++.+++. ...+++++|.++|
T Consensus 154 ----~~~~~~~~i~~~l~~~------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f 217 (410)
T 1kk1_A 154 ----KALENYRQIKEFIEGT------------VAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSF 217 (410)
T ss_dssp ----HHHHHHHHHHHHHTTS------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHHhc------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCCcEEEEEEEE
Confidence 0011122333333221 12357999999999888765432 1345889999999
Q ss_pred eecC--------ceeEEEEEEEeeeecCCCEEE-eccccchh---hccCCCCCceeEEeeeeecccccccc-cc--cEEE
Q 036359 514 VCEG--------YGTTIDVVLINGVLHEGDKIV-EPIDTKIQ---ALLTPHPMKELRVKGAYQHHKEIKAA-QG--IKIT 578 (657)
Q Consensus 514 ~~~g--------~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr---~ll~p~~~~e~rVksi~~~~~~v~~a-~g--v~i~ 578 (657)
.+.+ .|+|++|+|.+|+|++||.|+ +|....-+ ..+.| ...+|+++++|+.++..| +| +.+.
T Consensus 218 ~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~---~~~~v~~i~~~~~~v~~a~aG~~v~~~ 294 (410)
T 1kk1_A 218 DVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEP---ITTEIVSLQAGGQFVEEAYPGGLVGVG 294 (410)
T ss_dssp CCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEE---EEEEEEEEEETTEEESEECSSSCEEEE
T ss_pred eccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCcccccccccccc---ceeEEEEEEECCeEecEEcCCCEEEEE
Confidence 8764 688999999999999999998 66421000 00001 247899999999999877 45 6666
Q ss_pred ec---CC--CCCCCCCeEEE
Q 036359 579 AQ---GL--QDAIAGTSLYV 593 (657)
Q Consensus 579 ~~---gl--~~~~aG~~l~v 593 (657)
+. ++ .++..|+.|+.
T Consensus 295 ~~~~~~~~~~d~~~G~vl~~ 314 (410)
T 1kk1_A 295 TKLDPYLTKGDLMAGNVVGK 314 (410)
T ss_dssp ESSCGGGTGGGTTTTCEEEC
T ss_pred EecCcccchhhccceeEEec
Confidence 54 34 34678988763
No 18
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=3e-30 Score=282.38 Aligned_cols=262 Identities=23% Similarity=0.253 Sum_probs=173.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc---ccccccCceeeeccceeeecccccc-----hhhcccc-cccc-CCCcEEEEe
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN---VQEGEAGGITQQIGATYFPVENIQK-----RTEKLNA-DAKL-KVPGLLVVD 366 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~---v~~~~~~GiT~~ig~~~~~~~~~~~-----~~~~~~~-~~~~-~~~~l~iID 366 (657)
...|+|+||+|||||||+++|++.. +.....+|||+++++..+.+..... ....+.. +..+ ....++|||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 4559999999999999999999653 4455568999988766554421100 0000000 0000 014599999
Q ss_pred CCCCCcchhhhhcCCCCCceeeEeecccCCC-chhHHHHHHHHHhcCC-ceEEEecccccccCcccCCCccHHHHHHhhh
Q 036359 367 TPGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKERSV-DFIIALSKADKLYGWKSCKNAPIKKALEQQS 444 (657)
Q Consensus 367 TPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~~~~v-PiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~ 444 (657)
||||.+|..++.+++..+|++|||||+++|+ ++||++|+..+..+++ |+|||+||+|+..... ..
T Consensus 88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~------~~------- 154 (408)
T 1s0u_A 88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ------AE------- 154 (408)
T ss_dssp CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT------TT-------
T ss_pred CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH------HH-------
Confidence 9999999999999999999999999999998 9999999999988887 6999999999974110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------cccccceeEEEE
Q 036359 445 KDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRNEVQCTILEV 512 (657)
Q Consensus 445 ~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~~~~~~Vlev 512 (657)
..+..+...+... +...+++||+||+++.++.+++. ...+++++|.++
T Consensus 155 --------~~~~~i~~~l~~~------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~ 214 (408)
T 1s0u_A 155 --------ENYEQIKEFVKGT------------IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARS 214 (408)
T ss_dssp --------THHHHHHHHHTTS------------TTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEE
T ss_pred --------HHHHHHHHHHhhc------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEEEEE
Confidence 0112233333221 12357999999999988765432 134689999999
Q ss_pred EeecC--------ceeEEEEEEEeeeecCCCEEE-eccccch-hhccCCCCCceeEEeeeeeccccccccc-c--cEEEe
Q 036359 513 KVCEG--------YGTTIDVVLINGVLHEGDKIV-EPIDTKI-QALLTPHPMKELRVKGAYQHHKEIKAAQ-G--IKITA 579 (657)
Q Consensus 513 ~~~~g--------~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~V-r~ll~p~~~~e~rVksi~~~~~~v~~a~-g--v~i~~ 579 (657)
|.+.+ .|+|++|+|.+|+|++||.|. +|....- .......| ...+|++|++|+..+..|. | +.|.+
T Consensus 215 f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~a~~G~~v~~~~ 293 (408)
T 1s0u_A 215 FDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKP-LTTKIVSLAAGNTILRKAHPGGLIGVGT 293 (408)
T ss_dssp ECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEE-EEEECCEEEETTEEESEECSSSCEEEEC
T ss_pred EeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCccccccccccccc-ceeEEEEEEECCEEcCEEeCCCeEEEEe
Confidence 98865 688999999999999999998 7742100 00000001 2578999999999998773 4 55655
Q ss_pred c---CCC--CCCCCCeEE
Q 036359 580 Q---GLQ--DAIAGTSLY 592 (657)
Q Consensus 580 ~---gl~--~~~aG~~l~ 592 (657)
. |+. ++.+|+.|+
T Consensus 294 ~~~~~~~~~~~~~G~vl~ 311 (408)
T 1s0u_A 294 TLDPYLTKSDALTGSVVG 311 (408)
T ss_dssp SSCGGGTGGGTTTTCEEE
T ss_pred ccCcccchhhccceeEEE
Confidence 4 443 467898876
No 19
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=7.7e-30 Score=281.30 Aligned_cols=242 Identities=24% Similarity=0.355 Sum_probs=178.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc--c-c------------------------------ccccCceeeeccceeeecccc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN--V-Q------------------------------EGEAGGITQQIGATYFPVENI 344 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~--v-~------------------------------~~~~~GiT~~ig~~~~~~~~~ 344 (657)
..|+|+||+|||||||+++|++.. + . .++.+|||++++..++.+.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~-- 102 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA-- 102 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS--
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC--
Confidence 459999999999999999997543 0 0 1112455555544444332
Q ss_pred cchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccc
Q 036359 345 QKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKAD 423 (657)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiD 423 (657)
...++|||||||.+|..++.+++..+|++|||||+++|+.+||.+++.++..+++| +|||+||+|
T Consensus 103 --------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~D 168 (434)
T 1zun_B 103 --------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD 168 (434)
T ss_dssp --------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred --------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCc
Confidence 23489999999999999999999999999999999999999999999999999986 999999999
Q ss_pred cccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhh------
Q 036359 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVK------ 497 (657)
Q Consensus 424 l~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e------ 497 (657)
+.. |.. ..+......+...+...|+. ...+++||+||++|.++.+
T Consensus 169 l~~-~~~------------------~~~~~i~~~~~~~~~~~g~~----------~~~~~~i~vSA~~g~gi~~~~~~~~ 219 (434)
T 1zun_B 169 LNG-FDE------------------RVFESIKADYLKFAEGIAFK----------PTTMAFVPMSALKGDNVVNKSERSP 219 (434)
T ss_dssp TTT-SCH------------------HHHHHHHHHHHHHHHTTTCC----------CSEEEEEECCTTTCTTTSSCCTTCT
T ss_pred CCc-ccH------------------HHHHHHHHHHHHHHHHhCCC----------ccCceEEEEeccCCCCcccccccCc
Confidence 963 211 01111122333444444421 1357999999999887543
Q ss_pred ---------hhc--------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEE
Q 036359 498 ---------KLA--------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRV 559 (657)
Q Consensus 498 ---------~l~--------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rV 559 (657)
.|. ...+++++|..++...+.|+++.|+|.+|+|++||.|+ +|.. ...+|
T Consensus 220 w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~------------~~~~V 287 (434)
T 1zun_B 220 WYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSG------------KSSRV 287 (434)
T ss_dssp TCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTC------------CEEEE
T ss_pred cccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCC------------eEEEE
Confidence 221 13468899999988878888899999999999999999 6642 46899
Q ss_pred eeeeecccccccc-cc--cEEEecCCCCCCCCCeEEEcCC
Q 036359 560 KGAYQHHKEIKAA-QG--IKITAQGLQDAIAGTSLYVVGP 596 (657)
Q Consensus 560 ksi~~~~~~v~~a-~g--v~i~~~gl~~~~aG~~l~v~~~ 596 (657)
++|++|+.++..| +| |.+.+.+-.++.+|+.|+...+
T Consensus 288 ~~i~~~~~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 288 KSIVTFEGELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp EEEEETTEEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred EEEEEcCcceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 9999999999877 35 5666665456789999986543
No 20
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.96 E-value=9.3e-29 Score=270.11 Aligned_cols=261 Identities=23% Similarity=0.274 Sum_probs=176.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCcee-eeccceeeecccccchhhc-----cccc-cccCCCcEEEEeC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGIT-QQIGATYFPVENIQKRTEK-----LNAD-AKLKVPGLLVVDT 367 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT-~~ig~~~~~~~~~~~~~~~-----~~~~-~~~~~~~l~iIDT 367 (657)
...+.|+++||+|||||||+++|++...... .|.. ..++.. ......+..+.. +... .......++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK--LGYAETNIGVC-ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS--SEEEEEEEEEC-TTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc--cCccccceeec-cccccccceecccccccccccccccccceEEEEEC
Confidence 3456799999999999999999998543211 1111 011100 000000000000 0000 0011145999999
Q ss_pred CCCCcchhhhhcCCCCCceeeEeecccCCC-chhHHHHHHHHHhcCC-ceEEEecccccccCcccCCCccHHHHHHhhhH
Q 036359 368 PGHESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIESLDLLKERSV-DFIIALSKADKLYGWKSCKNAPIKKALEQQSK 445 (657)
Q Consensus 368 PGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e~l~~l~~~~v-PiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~ 445 (657)
|||.+|..++.+++..+|++|||||++++. .+||.+|+.++..+++ |+|+|+||+|+.. .+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~-------~~---------- 145 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS-------KE---------- 145 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC-------HH----------
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc-------hH----------
Confidence 999999999999999999999999999998 9999999999998887 7999999999973 10
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------cccccceeEEEEE
Q 036359 446 DVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRNEVQCTILEVK 513 (657)
Q Consensus 446 ~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~~~~~~Vlev~ 513 (657)
.....+..+...+...+ ...+++||+||++|.++.+++. ...+++++|.++|
T Consensus 146 ----~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~ 209 (403)
T 3sjy_A 146 ----EALSQYRQIKQFTKGTW------------AENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSF 209 (403)
T ss_dssp ----HHHHHHHHHHHHHTTST------------TTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHHhhC------------CCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEE
Confidence 01111223333333222 2357999999999988766542 1346899999999
Q ss_pred eecC--------ceeEEEEEEEeeeecCCCEEE-eccccc-h--hhccCCCCCceeEEeeeeeccccccccc-c--cEEE
Q 036359 514 VCEG--------YGTTIDVVLINGVLHEGDKIV-EPIDTK-I--QALLTPHPMKELRVKGAYQHHKEIKAAQ-G--IKIT 578 (657)
Q Consensus 514 ~~~g--------~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~-V--r~ll~p~~~~e~rVksi~~~~~~v~~a~-g--v~i~ 578 (657)
.+.+ .|+|++|+|.+|+|++||.|+ +|.... . +..+.| ...+|++|++|+.++..|. | +.|.
T Consensus 210 ~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 210 DVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEP---IFTKISSIRFGDEEFKEAKPGGLVAIG 286 (403)
T ss_dssp CCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEE---EEEEEEEEEETTEEESEECSSSCEEEE
T ss_pred eecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCccccccccccccc---ccEEEEEEEECCEEcCEEeCCCEEEEE
Confidence 8877 899999999999999999999 774310 0 001111 2478999999999998773 4 5555
Q ss_pred ec---CC--CCCCCCCeEEEc
Q 036359 579 AQ---GL--QDAIAGTSLYVV 594 (657)
Q Consensus 579 ~~---gl--~~~~aG~~l~v~ 594 (657)
+. |+ .++..|+.|+-.
T Consensus 287 l~~~~~~~~~d~~~G~vl~~~ 307 (403)
T 3sjy_A 287 TYLDPSLTKADNLLGSIITLA 307 (403)
T ss_dssp ESSCHHHHGGGTTTTCEEEET
T ss_pred eccccccchhhhccccEEeCC
Confidence 54 33 356789988754
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.96 E-value=2.1e-28 Score=285.20 Aligned_cols=274 Identities=22% Similarity=0.227 Sum_probs=182.3
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCc------------------ccccccCceeeeccceeeecccccchhhccccc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTN------------------VQEGEAGGITQQIGATYFPVENIQKRTEKLNAD 354 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~------------------v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~ 354 (657)
.++|| |+|+||+|||||||+++|+... ...++.+|||+......+.|....
T Consensus 11 ~~IRN--i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~--------- 79 (709)
T 4fn5_A 11 NRYRN--IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR--------- 79 (709)
T ss_dssp GGEEE--EEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT---------
T ss_pred HHCeE--EEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCc---------
Confidence 57899 9999999999999999997221 123456788877777766664321
Q ss_pred cccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCc
Q 036359 355 AKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNA 434 (657)
Q Consensus 355 ~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~ 434 (657)
...+.+.|+|||||||.+|...+.+.++.||+||+|||+..|+++||...|+++...++|+|+|+||||+. ++
T Consensus 80 ~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~-------~a 152 (709)
T 4fn5_A 80 GQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ-------GA 152 (709)
T ss_dssp SCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST-------TC
T ss_pred CCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc-------Cc
Confidence 11234569999999999999999999999999999999999999999999999999999999999999995 56
Q ss_pred cHHHHHHhhhHHH-------------------------------------------------HHHHHHHHHHHHHHHH--
Q 036359 435 PIKKALEQQSKDV-------------------------------------------------EDEFKMRLRNIITQFK-- 463 (657)
Q Consensus 435 ~~~~~L~~q~~~~-------------------------------------------------~~~~~~~~~~ii~~L~-- 463 (657)
++...+.+....+ ..........++..+.
T Consensus 153 ~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 232 (709)
T 4fn5_A 153 NFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEA 232 (709)
T ss_dssp CHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 6666555432211 1111111111111111
Q ss_pred ---------Hc-CCchhhh----hhccccCcceeEEeccchhhhhhhhhh-------c----------------------
Q 036359 464 ---------EQ-GLNTELY----YKNKEMGKTFSIVPTSAIRHKTMVKKL-------A---------------------- 500 (657)
Q Consensus 464 ---------~~-G~~~~~~----~~~~~~~~~v~iVpvSA~t~~~L~e~l-------~---------------------- 500 (657)
+. .+..... ......+..+|++..||+++.++..+| +
T Consensus 233 d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 312 (709)
T 4fn5_A 233 NEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDER 312 (709)
T ss_dssp SHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEE
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccc
Confidence 11 1111000 000112466899999999976654332 2
Q ss_pred ---cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeee----cccccccc-
Q 036359 501 ---FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQ----HHKEIKAA- 572 (657)
Q Consensus 501 ---~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~----~~~~v~~a- 572 (657)
...||.+.|+.+..++..|.+++++|++|+|+.||.|.-.. ..+..+|..++. ...++..+
T Consensus 313 ~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~-----------~~~~~~v~~l~~~~g~~~~~v~~~~ 381 (709)
T 4fn5_A 313 HADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSV-----------KGKKERVGRMVQMHANQREEIKEVR 381 (709)
T ss_dssp CSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTT-----------TCCCCBCCCEECCCSSCCCEESEEC
T ss_pred cCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEec-----------CCcEEeecceeEeecceeeEeeeec
Confidence 12358889999999999999999999999999999987111 112223333332 23445555
Q ss_pred cccEEEecCCCCCCCCCeEEEcC
Q 036359 573 QGIKITAQGLQDAIAGTSLYVVG 595 (657)
Q Consensus 573 ~gv~i~~~gl~~~~aG~~l~v~~ 595 (657)
+|-.+++.||..+..|++|+...
T Consensus 382 aGdIv~i~Gl~~~~~gdTl~~~~ 404 (709)
T 4fn5_A 382 AGDIAALIGMKDVTTGDTLCSIE 404 (709)
T ss_dssp TTCEEEECSCSSCCTTCEEECSS
T ss_pred CCCeeeecCCCcCccCCEecCCC
Confidence 58888899999999999997543
No 22
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.95 E-value=9.3e-28 Score=273.08 Aligned_cols=240 Identities=24% Similarity=0.309 Sum_probs=168.1
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc--c-------------cccccCceeeeccceeeecccccchhhccccccccC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN--V-------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLK 358 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~--v-------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~ 358 (657)
++|| |+|+||+|||||||+++|+... + ..++.+|||.......+.|.... -.
T Consensus 5 ~irn--I~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~d-----------g~ 71 (600)
T 2ywe_A 5 NVRN--FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKD-----------GN 71 (600)
T ss_dssp GEEE--EEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTT-----------SC
T ss_pred CceE--EEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCC-----------CC
Confidence 4566 9999999999999999997521 1 12234677766665555443210 01
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
.+.++|||||||.+|...+.+++..||++|||||+++|+++||..+|..+...++|+|+|+||||+.. +++.
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~-------a~~~- 143 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPS-------ADVD- 143 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTT-------CCHH-
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccc-------cCHH-
Confidence 13489999999999999999999999999999999999999999999999999999999999999963 2221
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------ccccc
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKE-QGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRNEV 505 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~-~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~~~ 505 (657)
.+...+.. .|+.. .+++++||++|.++.+++. ...++
T Consensus 144 ------------------~v~~el~~~lg~~~------------~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl 193 (600)
T 2ywe_A 144 ------------------RVKKQIEEVLGLDP------------EEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPL 193 (600)
T ss_dssp ------------------HHHHHHHHTSCCCG------------GGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred ------------------HHHHHHHHhhCCCc------------ccEEEEEeecCCCchHHHHHHHHhcccccccccCCc
Confidence 12222222 23321 2589999999988766542 13468
Q ss_pred ceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecc---cccccc-ccc-EEEe
Q 036359 506 QCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHH---KEIKAA-QGI-KITA 579 (657)
Q Consensus 506 ~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~---~~v~~a-~gv-~i~~ 579 (657)
.+.|++++.+++.|+|++++|++|+|+.||.|. .|.. ...+|.+++.++ .++..+ +|- ...+
T Consensus 194 ~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~------------~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~ 261 (600)
T 2ywe_A 194 KALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTG------------KEYEVTEVGAQTPKMTKFDKLSAGDVGYIA 261 (600)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTT------------EEEECCEEEEESSSEEEESCEETTCEEEEE
T ss_pred ceeEEEEeecccceEEEEEEEEeCEEecCCEEEecccc------------ceEeeecccccCCCceECCEEecCceeeee
Confidence 899999999999999999999999999999998 4432 234566665433 344444 353 3333
Q ss_pred cC---CCCCCCCCeEEEcCC
Q 036359 580 QG---LQDAIAGTSLYVVGP 596 (657)
Q Consensus 580 ~g---l~~~~aG~~l~v~~~ 596 (657)
.| +.++..|++|+....
T Consensus 262 ~gi~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 262 ASIKDVRDIRIGDTITHAKN 281 (600)
T ss_dssp SSCCCTTSSCTTCEEEESSS
T ss_pred ccccchhhccCCCEEEeCCC
Confidence 45 457789999986543
No 23
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.95 E-value=3.2e-29 Score=288.69 Aligned_cols=220 Identities=21% Similarity=0.261 Sum_probs=157.0
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc--------c----------cccccCceeeeccceeeecccccchhhcccccc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN--------V----------QEGEAGGITQQIGATYFPVENIQKRTEKLNADA 355 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~--------v----------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~ 355 (657)
.+|| |+|+||+|||||||+++|+... + ..++.+|||+......+.|
T Consensus 1 kIRN--i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-------------- 64 (638)
T 3j25_A 1 KIIN--IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-------------- 64 (638)
T ss_dssp CCCC--CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC--------------
T ss_pred CeeE--EEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE--------------
Confidence 3789 9999999999999999997321 1 1122356665555555544
Q ss_pred ccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCcc
Q 036359 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAP 435 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~ 435 (657)
+.+.|+|||||||.+|...+.++++.+|++|+|||+..|+++||..+|+++..+++|+|+|+||||+. +++
T Consensus 65 --~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~-------~a~ 135 (638)
T 3j25_A 65 --ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN-------GID 135 (638)
T ss_dssp --SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS-------SCC
T ss_pred --CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc-------cCC
Confidence 34569999999999999999999999999999999999999999999999999999999999999995 566
Q ss_pred HHHHHHhhhHHH--------------------------HHHHHHHHHHHHHHHH-HcCCchhhhhhc----cccCcceeE
Q 036359 436 IKKALEQQSKDV--------------------------EDEFKMRLRNIITQFK-EQGLNTELYYKN----KEMGKTFSI 484 (657)
Q Consensus 436 ~~~~L~~q~~~~--------------------------~~~~~~~~~~ii~~L~-~~G~~~~~~~~~----~~~~~~v~i 484 (657)
+...+.+....+ ...+...-..++..+. ...+........ -..+..+|+
T Consensus 136 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 215 (638)
T 3j25_A 136 LSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPL 215 (638)
T ss_dssp SHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccc
Confidence 666555432211 0001111111111111 111111100000 011356789
Q ss_pred Eeccchhhhhhhhhhc------------cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE
Q 036359 485 VPTSAIRHKTMVKKLA------------FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV 538 (657)
Q Consensus 485 VpvSA~t~~~L~e~l~------------~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~ 538 (657)
+..||+++.++..+|. ...+|.+.|+.+..+++.|.+++++|++|+|+.||.|.
T Consensus 216 ~~gSa~~~~Gv~~LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~ 281 (638)
T 3j25_A 216 YHGSAKSNIGIDNLIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVR 281 (638)
T ss_dssp CCCCSTTCCSHHHHHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSS
T ss_pred cccccccCCCchhHhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccc
Confidence 9999999776655442 13468899999999999999999999999999999887
No 24
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.95 E-value=2.7e-27 Score=266.56 Aligned_cols=259 Identities=20% Similarity=0.257 Sum_probs=176.9
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc------------------c----cccccCceeeeccceeeecccccchhhcc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN------------------V----QEGEAGGITQQIGATYFPVENIQKRTEKL 351 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~------------------v----~~~~~~GiT~~ig~~~~~~~~~~~~~~~~ 351 (657)
.+|+ |+|+||+|||||||+++|+... + .....+|+|.......+.+.
T Consensus 12 ~~r~--IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------- 80 (528)
T 3tr5_A 12 MRRT--FAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--------- 80 (528)
T ss_dssp TEEE--EEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET---------
T ss_pred cCCE--EEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC---------
Confidence 3455 9999999999999999996211 0 01112445544444333332
Q ss_pred ccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccC
Q 036359 352 NADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSC 431 (657)
Q Consensus 352 ~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~ 431 (657)
.+.++|||||||.+|...+.+++..+|++|+|||+++|+..++..+|..+...++|+|+|+||||+..
T Consensus 81 -------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~----- 148 (528)
T 3tr5_A 81 -------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT----- 148 (528)
T ss_dssp -------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC-----
T ss_pred -------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc-----
Confidence 23599999999999999999999999999999999999999999999999999999999999999952
Q ss_pred CCccHHHHHHhhhHHH-----------------------------------------------------HHHHHHHHHHH
Q 036359 432 KNAPIKKALEQQSKDV-----------------------------------------------------EDEFKMRLRNI 458 (657)
Q Consensus 432 ~~~~~~~~L~~q~~~~-----------------------------------------------------~~~~~~~~~~i 458 (657)
+++...+......+ .+.+...+..+
T Consensus 149 --~~~~~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (528)
T 3tr5_A 149 --RPSIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASEL 226 (528)
T ss_dssp --SCHHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHH
T ss_pred --ccHHHHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHH
Confidence 33333222211100 00000000010
Q ss_pred HH---HHHH--cCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc---------------------ccccceeEEEE
Q 036359 459 IT---QFKE--QGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF---------------------RNEVQCTILEV 512 (657)
Q Consensus 459 i~---~L~~--~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~---------------------~~~~~~~Vlev 512 (657)
.. .+.. ..+....+. -+..+|++++||+++.++.++|.. ..+|.+.|+.+
T Consensus 227 ~e~~~l~~~~~~~~~~~~~~----~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi 302 (528)
T 3tr5_A 227 RNEIELVKGASHPFEREGYL----KGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKI 302 (528)
T ss_dssp HHHHHHHHHHSCCCCHHHHH----TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEE
T ss_pred hhhcchhhhhhhHHHHHHHh----cCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEE
Confidence 00 0000 111111111 146789999999998887664421 24578889988
Q ss_pred Ee--ec-CceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeee----cccccccc-cccEEEecCCC
Q 036359 513 KV--CE-GYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQ----HHKEIKAA-QGIKITAQGLQ 583 (657)
Q Consensus 513 ~~--~~-g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~----~~~~v~~a-~gv~i~~~gl~ 583 (657)
.. ++ ++|.+++++|++|+|+.|+.|. .+.. +..+|.+++. ++..+..| +|-.+.+.|+.
T Consensus 303 ~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~------------~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~ 370 (528)
T 3tr5_A 303 QANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLK------------KEIQINNALTFMAGKRENAEEAWPGDIIGLHNHG 370 (528)
T ss_dssp EECCC-CCCCEEEEEEEEESCEETTEEEEETTTT------------EEEEESSCBCCBTTCSSCCSEECTTCEEEEEESS
T ss_pred ecccCccCCceEEEEEEecCeEcCCCEEEecCCC------------ceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCC
Confidence 74 66 8899999999999999999998 3322 4567777765 34566666 58888888999
Q ss_pred CCCCCCeEEE
Q 036359 584 DAIAGTSLYV 593 (657)
Q Consensus 584 ~~~aG~~l~v 593 (657)
.+..|++|+.
T Consensus 371 ~~~~GDtl~~ 380 (528)
T 3tr5_A 371 TIQIGDTFTQ 380 (528)
T ss_dssp SCCTTCEEES
T ss_pred CCccCCEEcC
Confidence 9999999974
No 25
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.94 E-value=3.7e-26 Score=265.62 Aligned_cols=270 Identities=22% Similarity=0.233 Sum_probs=182.2
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc--cc----------------ccccCceeeeccceeeecccccchhhcccccc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN--VQ----------------EGEAGGITQQIGATYFPVENIQKRTEKLNADA 355 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~--v~----------------~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~ 355 (657)
++|+ |+|+||+|||||||+++|+... +. ....+|+|.......+.+.... .
T Consensus 9 ~~~~--I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~---------~ 77 (704)
T 2rdo_7 9 RYRN--IGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA---------K 77 (704)
T ss_pred cccE--EEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc---------c
Confidence 4555 9999999999999999997421 11 0113566665555444443210 0
Q ss_pred ccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCcc
Q 036359 356 KLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAP 435 (657)
Q Consensus 356 ~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~ 435 (657)
.-..+.++|||||||.+|...+.+++..+|++|||||+++|+..||..+|.++...++|+|+|+||+|+. .++
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~-------~~~ 150 (704)
T 2rdo_7 78 QYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM-------GAN 150 (704)
T ss_pred cCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc-------ccc
Confidence 0112469999999999999999999999999999999999999999999999999999999999999996 334
Q ss_pred HHHHHHhhhHHHH-------------------------------------------------HHHHHHHHHHHHHHHHcC
Q 036359 436 IKKALEQQSKDVE-------------------------------------------------DEFKMRLRNIITQFKEQG 466 (657)
Q Consensus 436 ~~~~L~~q~~~~~-------------------------------------------------~~~~~~~~~ii~~L~~~G 466 (657)
+...+......+. .........++..+.+..
T Consensus 151 ~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~d 230 (704)
T 2rdo_7 151 FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEAS 230 (704)
T ss_pred HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444333221110 000001112222221111
Q ss_pred Cc-hhhhhhcc---------------ccCcceeEEeccchhhhhhhhhh-------c-----------------------
Q 036359 467 LN-TELYYKNK---------------EMGKTFSIVPTSAIRHKTMVKKL-------A----------------------- 500 (657)
Q Consensus 467 ~~-~~~~~~~~---------------~~~~~v~iVpvSA~t~~~L~e~l-------~----------------------- 500 (657)
-. .+.|+... ..+..+|++.+||+++.++..+| +
T Consensus 231 d~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~ 310 (704)
T 2rdo_7 231 EELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERH 310 (704)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccc
Confidence 00 00111100 01346899999999975543322 1
Q ss_pred --cccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeec----ccccccc-
Q 036359 501 --FRNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA- 572 (657)
Q Consensus 501 --~~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a- 572 (657)
...||.+.|+.++.+++.|.+++++|++|+|+.||.|. ++. .+..+|.+++.. ..++..+
T Consensus 311 ~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~------------~~~~~v~~l~~~~g~~~~~v~~~~ 378 (704)
T 2rdo_7 311 ASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVK------------AARERFGRIVQMHANKREEIKEVR 378 (704)
T ss_pred cCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCC------------CcEEEeceEEEEeCCCceEcceeC
Confidence 12357899999999999999999999999999999998 221 234677777653 4456655
Q ss_pred cccEEEecCCCCCCCCCeEEE
Q 036359 573 QGIKITAQGLQDAIAGTSLYV 593 (657)
Q Consensus 573 ~gv~i~~~gl~~~~aG~~l~v 593 (657)
+|-.+++.||+++..|++|+.
T Consensus 379 aGdIv~i~gl~~~~~GdTl~~ 399 (704)
T 2rdo_7 379 AGDIAAAIGLKDVTTGDTLCD 399 (704)
T ss_pred CCCEEEEeCcccCccCCEEeC
Confidence 588888889999999999984
No 26
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.94 E-value=5.4e-27 Score=267.15 Aligned_cols=240 Identities=22% Similarity=0.267 Sum_probs=163.0
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc--c-------------cccccCceeeeccceeeecccccchhhccccccccC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN--V-------------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLK 358 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~--v-------------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~ 358 (657)
++|| |+|+||+|||||||+++|+... + ..++.+|+|.......+.|.... -.
T Consensus 3 ~irn--I~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~-----------g~ 69 (599)
T 3cb4_D 3 NIRN--FSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASD-----------GE 69 (599)
T ss_dssp TEEE--EEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTT-----------SC
T ss_pred CCeE--EEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCC-----------CC
Confidence 3566 9999999999999999997521 1 12234677766665555543210 01
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHH
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKK 438 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~ 438 (657)
.+.++|||||||.+|...+.+++..+|++|||||+++|++.||..+|..+...++|+|+|+||+|+.. +++..
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~-------a~~~~ 142 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPA-------ADPER 142 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTT-------CCHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccc-------ccHHH
Confidence 13489999999999999999999999999999999999999999999999999999999999999963 22211
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhhccccCcceeEEeccchhhhhhhhhhc------------ccccc
Q 036359 439 ALEQQSKDVEDEFKMRLRNIITQFKE-QGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA------------FRNEV 505 (657)
Q Consensus 439 ~L~~q~~~~~~~~~~~~~~ii~~L~~-~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~------------~~~~~ 505 (657)
+...+.. .|+.. .+++++||+++.++.+++. ...|+
T Consensus 143 -------------------v~~ei~~~lg~~~------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~ 191 (599)
T 3cb4_D 143 -------------------VAEEIEDIVGIDA------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPL 191 (599)
T ss_dssp -------------------HHHHHHHHTCCCC------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred -------------------HHHHHHHHhCCCc------------ceEEEeecccCCCchhHHHHHhhcCCCccccccCCc
Confidence 1112221 23321 2579999999988766542 13578
Q ss_pred ceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeecc---cccccc-cc-cEEEe
Q 036359 506 QCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHH---KEIKAA-QG-IKITA 579 (657)
Q Consensus 506 ~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~---~~v~~a-~g-v~i~~ 579 (657)
.+.|++++.+++.|++++++|++|+|+.||.|. .|.. ...+|..++..+ ..+..+ .| +...+
T Consensus 192 ~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~------------~~~~v~~i~~~~~~~~~~~~~~aGdi~~~~ 259 (599)
T 3cb4_D 192 QALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTG------------QTYNADRLGIFTPKQVDRTELKCGEVGWLV 259 (599)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTC------------CEEECCEEEEESSSEEECSEECTTCEEEEE
T ss_pred eeeeeeccccccccEEEEEEEEeCEEecCCEEEecccc------------ceeEEeeeeeccCCceECCEEcCCCeeEee
Confidence 999999999999999999999999999999998 3322 234555555432 334433 34 33333
Q ss_pred cCC---CCCCCCCeEEEcCC
Q 036359 580 QGL---QDAIAGTSLYVVGP 596 (657)
Q Consensus 580 ~gl---~~~~aG~~l~v~~~ 596 (657)
.|+ .++..|++|+....
T Consensus 260 ~gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 260 CAIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp CCCSSGGGSCTTCEEEESSS
T ss_pred ccccccccCccCCEeeecCC
Confidence 454 46789999986543
No 27
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.94 E-value=1.1e-25 Score=261.45 Aligned_cols=265 Identities=22% Similarity=0.201 Sum_probs=174.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCc--------ccc----------cccCceeeeccceeeecccccchhhccccccc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTN--------VQE----------GEAGGITQQIGATYFPVENIQKRTEKLNADAK 356 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~--------v~~----------~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~ 356 (657)
.++ |+|+||+|||||||+++|+... +.. ...+|+|.......+.+.
T Consensus 12 ~~~--I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~-------------- 75 (691)
T 1dar_A 12 LRN--IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK-------------- 75 (691)
T ss_dssp EEE--EEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--------------
T ss_pred ccE--EEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--------------
Confidence 455 9999999999999999998321 110 113455544444333332
Q ss_pred cCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccH
Q 036359 357 LKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 357 ~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~ 436 (657)
.+.++|||||||.+|...+.+++..+|++|||||++++...+|..+|..+...++|+|+|+||+|+.. +++
T Consensus 76 --~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-------~~~ 146 (691)
T 1dar_A 76 --DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG-------ADL 146 (691)
T ss_dssp --TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT-------CCH
T ss_pred --CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc-------CCH
Confidence 24599999999999999999999999999999999999999999999999999999999999999963 223
Q ss_pred HHHHHhhhHH------------------------------------------------HHHHHHHHHHHHHHHHHH----
Q 036359 437 KKALEQQSKD------------------------------------------------VEDEFKMRLRNIITQFKE---- 464 (657)
Q Consensus 437 ~~~L~~q~~~------------------------------------------------~~~~~~~~~~~ii~~L~~---- 464 (657)
...+...... +..........++..+.+
T Consensus 147 ~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~ 226 (691)
T 1dar_A 147 WLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDEN 226 (691)
T ss_dssp HHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 2222221110 000011111112111111
Q ss_pred --------cCCchhhhhhc----cccCcceeEEeccchhhhhhhhhh-------c-----------------------cc
Q 036359 465 --------QGLNTELYYKN----KEMGKTFSIVPTSAIRHKTMVKKL-------A-----------------------FR 502 (657)
Q Consensus 465 --------~G~~~~~~~~~----~~~~~~v~iVpvSA~t~~~L~e~l-------~-----------------------~~ 502 (657)
..+........ -.-+..+|++++||+++.++..+| + ..
T Consensus 227 l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~ 306 (691)
T 1dar_A 227 IMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPN 306 (691)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTT
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCC
Confidence 11111100000 001345899999999976554332 1 12
Q ss_pred cccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEE
Q 036359 503 NEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKI 577 (657)
Q Consensus 503 ~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i 577 (657)
.||.+.|++++.+++.|.+++++|++|+|+.||.|..+. ..+..+|..++.. ..++..+ +|-.+
T Consensus 307 ~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~-----------~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ 375 (691)
T 1dar_A 307 GPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT-----------KGRKERVARLLRMHANHREEVEELKAGDLG 375 (691)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETT-----------TTEEEECCEEEEECSSCEEEESEEETTCEE
T ss_pred CCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecC-----------CCcEEEEceEEEEeCCCceEcceecCCCEE
Confidence 368899999999999999999999999999999998111 1234566666543 3455555 58888
Q ss_pred EecCCCCCCCCCeEEEcC
Q 036359 578 TAQGLQDAIAGTSLYVVG 595 (657)
Q Consensus 578 ~~~gl~~~~aG~~l~v~~ 595 (657)
++.||+++..|++|+...
T Consensus 376 ~i~gl~~~~~Gdtl~~~~ 393 (691)
T 1dar_A 376 AVVGLKETITGDTLVGED 393 (691)
T ss_dssp EEECCSSCCTTCEEEETT
T ss_pred EEeCcccCccCCEEecCC
Confidence 888999999999998644
No 28
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.94 E-value=1.6e-25 Score=258.98 Aligned_cols=259 Identities=18% Similarity=0.239 Sum_probs=178.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccccccc------------------CceeeeccceeeecccccchhhccccccccCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEA------------------GGITQQIGATYFPVENIQKRTEKLNADAKLKV 359 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~------------------~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 359 (657)
.+|+|+||+|||||||+++|++........ +|+|.......+. ...
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~----------------~~~ 73 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL----------------FRG 73 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE----------------ETT
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe----------------eCC
Confidence 349999999999999999998533211111 1222222211111 122
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHH
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
..++|||||||.+|...+.++++.+|++|||+|+.+|+.+||..+|..+...++|+|+|+||+|+. . .+...
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~-------~~~~~ 145 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-G-------DYYAL 145 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-C-------CHHHH
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-h-------hHHHH
Confidence 358999999999999999999999999999999999999999999999999999999999999985 1 12222
Q ss_pred HHhhhHH--------------------------------------------HHHHHHHHHHHHHHHHHHcCCc-hhhhhh
Q 036359 440 LEQQSKD--------------------------------------------VEDEFKMRLRNIITQFKEQGLN-TELYYK 474 (657)
Q Consensus 440 L~~q~~~--------------------------------------------~~~~~~~~~~~ii~~L~~~G~~-~~~~~~ 474 (657)
+...... +..........++..+.+.+-. .+.|+.
T Consensus 146 ~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~ 225 (665)
T 2dy1_A 146 LEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLE 225 (665)
T ss_dssp HHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHC
Confidence 2221111 1111112223333333332211 111222
Q ss_pred ccc---------------cCcceeEEeccchhhhhhhhhh-------c------cccccceeEEEEEeecCceeEEEEEE
Q 036359 475 NKE---------------MGKTFSIVPTSAIRHKTMVKKL-------A------FRNEVQCTILEVKVCEGYGTTIDVVL 526 (657)
Q Consensus 475 ~~~---------------~~~~v~iVpvSA~t~~~L~e~l-------~------~~~~~~~~Vlev~~~~g~GtVv~g~v 526 (657)
+.. -+..+|++++||+++.++..+| + ...||.+.|++++.+++.|++++++|
T Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV 305 (665)
T 2dy1_A 226 GEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRL 305 (665)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEE
Confidence 111 1245899999999986654433 2 24578999999999999999999999
Q ss_pred EeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEecCCCCCCCCCeEEEc
Q 036359 527 INGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITAQGLQDAIAGTSLYVV 594 (657)
Q Consensus 527 ~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~~gl~~~~aG~~l~v~ 594 (657)
++|+|+.||.|+ ++ ...+|.+++.. ..++..+ +|..+++.||+++..|++|+..
T Consensus 306 ~sG~l~~g~~v~~~~--------------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~ 365 (665)
T 2dy1_A 306 YRGRLKPGDSLQSEA--------------GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQG 365 (665)
T ss_dssp EESEECTTEEEBCTT--------------SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESS
T ss_pred cccEEecCCEEEcCC--------------CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecC
Confidence 999999999998 32 33577777653 3466666 5888889999999999999843
No 29
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.94 E-value=1.3e-25 Score=253.13 Aligned_cols=256 Identities=16% Similarity=0.231 Sum_probs=167.8
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccc----------------------cccCceeeeccceeeecccccchhhccccccc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQE----------------------GEAGGITQQIGATYFPVENIQKRTEKLNADAK 356 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~----------------------~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~ 356 (657)
.|+|+||+|||||||+++|+...... ...+|+|.......+.+
T Consensus 15 ~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--------------- 79 (529)
T 2h5e_A 15 TFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--------------- 79 (529)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE---------------
T ss_pred EEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE---------------
Confidence 39999999999999999998532110 11233333332222222
Q ss_pred cCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccH
Q 036359 357 LKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPI 436 (657)
Q Consensus 357 ~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~ 436 (657)
..+.++|||||||.+|...+.+++..+|++|||||+++|+..+|..++..+...++|+|+|+||+|+.. ++.
T Consensus 80 -~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~-------~~~ 151 (529)
T 2h5e_A 80 -HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDI-------RDP 151 (529)
T ss_dssp -TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCC-------SCH
T ss_pred -CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcc-------ccH
Confidence 234599999999999999999999999999999999999999999999999999999999999999963 222
Q ss_pred HHHHHhhhHH-----------------------------------------------------HHHHHHH-HHHHHH---
Q 036359 437 KKALEQQSKD-----------------------------------------------------VEDEFKM-RLRNII--- 459 (657)
Q Consensus 437 ~~~L~~q~~~-----------------------------------------------------~~~~~~~-~~~~ii--- 459 (657)
...+...... +.+.+.. .+....
T Consensus 152 ~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~ 231 (529)
T 2h5e_A 152 MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDEL 231 (529)
T ss_dssp HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhccc
Confidence 2222111000 0000000 000000
Q ss_pred HHHHHcC--CchhhhhhccccCcceeEEeccchhhhhhhhhhc-------c--------------ccccceeEEEEEe--
Q 036359 460 TQFKEQG--LNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA-------F--------------RNEVQCTILEVKV-- 514 (657)
Q Consensus 460 ~~L~~~G--~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~-------~--------------~~~~~~~Vlev~~-- 514 (657)
..+...+ +....+ .-+..+|++++||+++.++..+|. . ..+|.+.|+.+..
T Consensus 232 ~l~~~~~~~~~~~~~----~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~ 307 (529)
T 2h5e_A 232 ELVKGASNEFDKELF----LAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANM 307 (529)
T ss_dssp HHHHHHSCCCCHHHH----HTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSC
T ss_pred chhhhhhhhhhHHHH----HhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeecc
Confidence 0000000 000000 014578999999999876654432 1 1356677777754
Q ss_pred -ecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeec----ccccccc-cccEEEecCCCCCCC
Q 036359 515 -CEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQH----HKEIKAA-QGIKITAQGLQDAIA 587 (657)
Q Consensus 515 -~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~----~~~v~~a-~gv~i~~~gl~~~~a 587 (657)
.++.|++++++|++|+|+.||.|. .+. .+..+|.+++.+ +..+..| +|..+.+.|+..+..
T Consensus 308 d~~~~G~i~~~RV~sG~l~~g~~v~~~~~------------~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~ 375 (529)
T 2h5e_A 308 DPKHRDRVAFMRVVSGKYEKGMKLRQVRT------------AKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQI 375 (529)
T ss_dssp CSSSSCCCEEEEEEESCEETTCEEEETTT------------TEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCT
T ss_pred CcCCCceEEEEEEecCeEcCCCEEEEeeC------------CCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCcc
Confidence 356899999999999999999998 332 145678888753 5667766 688899999999999
Q ss_pred CCeEEE
Q 036359 588 GTSLYV 593 (657)
Q Consensus 588 G~~l~v 593 (657)
|++|+.
T Consensus 376 Gdtl~~ 381 (529)
T 2h5e_A 376 GDTFTQ 381 (529)
T ss_dssp TCEEES
T ss_pred CCEeec
Confidence 999984
No 30
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.92 E-value=3e-24 Score=249.39 Aligned_cols=263 Identities=24% Similarity=0.244 Sum_probs=173.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCc--c------cc----------cccCceeeeccceeeecccccchhhccccccccCCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN--V------QE----------GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVP 360 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~--v------~~----------~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (657)
+|+|+||+|||||||+++|+... + .. ...+|+|.......+.+ ..+
T Consensus 12 ~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~----------------~~~ 75 (693)
T 2xex_A 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW----------------EGH 75 (693)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE----------------TTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE----------------CCe
Confidence 49999999999999999998421 1 00 01234443333332322 234
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHH
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKAL 440 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L 440 (657)
.++|||||||.+|...+.+++..+|++|||||+++|+..++...|..+...++|+|+|+||+|+.. +++...+
T Consensus 76 ~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~-------~~~~~~~ 148 (693)
T 2xex_A 76 RVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLG-------ANFEYSV 148 (693)
T ss_dssp EEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTT-------CCHHHHH
T ss_pred eEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccc-------cchHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999963 2333322
Q ss_pred HhhhHHH------------------------------------------------HHHHHHHHHHHHHHHHHcCCc-hhh
Q 036359 441 EQQSKDV------------------------------------------------EDEFKMRLRNIITQFKEQGLN-TEL 471 (657)
Q Consensus 441 ~~q~~~~------------------------------------------------~~~~~~~~~~ii~~L~~~G~~-~~~ 471 (657)
......+ ..........++..+.+..-. .+.
T Consensus 149 ~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~ 228 (693)
T 2xex_A 149 STLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEK 228 (693)
T ss_dssp HHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 2211100 000011111122222111000 000
Q ss_pred hhhcc---------------ccCcceeEEeccchhhhhhhhhh-------c-------------------------cccc
Q 036359 472 YYKNK---------------EMGKTFSIVPTSAIRHKTMVKKL-------A-------------------------FRNE 504 (657)
Q Consensus 472 ~~~~~---------------~~~~~v~iVpvSA~t~~~L~e~l-------~-------------------------~~~~ 504 (657)
|+... ..+..+|++.+||+++.++..+| + ...|
T Consensus 229 ~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p 308 (693)
T 2xex_A 229 YLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAE 308 (693)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSC
T ss_pred HhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCc
Confidence 11100 11356899999999975543322 2 1236
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeecc----cccccc-cccEEEe
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHH----KEIKAA-QGIKITA 579 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~----~~v~~a-~gv~i~~ 579 (657)
|.+.|+.++.+++.|.+++++|++|+|+.||.|..+. ..+..+|..++..+ .++..+ +|-.+++
T Consensus 309 ~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~-----------~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i 377 (693)
T 2xex_A 309 FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNST-----------KGKRERVGRLLQMHANSRQEIDTVYSGDIAAA 377 (693)
T ss_dssp CEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETT-----------TTEEEEECCEEEECSSCEEECSEEETTCEEEE
T ss_pred eEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecC-----------CCceEEeceEEEEeCCCceEccccCcCCEEEE
Confidence 8899999999999999999999999999999998211 12456777776543 455555 5877888
Q ss_pred cCCCCCCCCCeEEEcC
Q 036359 580 QGLQDAIAGTSLYVVG 595 (657)
Q Consensus 580 ~gl~~~~aG~~l~v~~ 595 (657)
.||+++..|++|+...
T Consensus 378 ~gl~~~~~GdTl~~~~ 393 (693)
T 2xex_A 378 VGLKDTGTGDTLCGEK 393 (693)
T ss_dssp ESCSSCCTTCEEEETT
T ss_pred eCcccCccCCEEecCC
Confidence 8999999999998543
No 31
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.87 E-value=8.5e-22 Score=233.19 Aligned_cols=130 Identities=23% Similarity=0.344 Sum_probs=92.0
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCc------------c----cccccCceeeeccceeeecccccchhhcccccccc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTN------------V----QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKL 357 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~------------v----~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~ 357 (657)
++|+ |+|+||+|||||||+++|+... + .....+|+|.......+.+.........+.....-
T Consensus 18 ~~rn--I~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 18 NVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GEEE--EEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4566 9999999999999999998542 1 01123455554444333332100000000000001
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+.++|||||||.+|...+.++++.+|++|||||+.+|+..||..+|..+...++|+|+|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 12358999999999999999999999999999999999999999999998888999999999999996
No 32
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.84 E-value=7.7e-21 Score=180.87 Aligned_cols=159 Identities=41% Similarity=0.602 Sum_probs=121.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+.+.|+|+|++|+|||||+++|++..+.....+++|.+++...+.+.. ..+.|||||||..|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND----------------KKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT----------------EEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC----------------ceEEEEECCCCHHHH
Confidence 3567799999999999999999999887766566666666554444332 248899999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMR 454 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~ 454 (657)
.++.+++..+|++|||+|++++...++++.+..+...++|+|+|+||+|+.. .+.
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~-------~~~------------------ 124 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE-------ANP------------------ 124 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC-------SCH------------------
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc-------CCH------------------
Confidence 9999999999999999999999999999999888888999999999999963 110
Q ss_pred HHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 455 LRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 455 ~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+...+... ..++..++++++||+++.++.+.+..
T Consensus 125 -~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 125 -DRVMQELMEYNLVP------EEWGGDTIFCKLSAKTKEGLDHLLEM 164 (178)
T ss_dssp -HHHHHHHTTTTCCB------TTTTSSEEEEECCSSSSHHHHHHHHH
T ss_pred -HHHHHHHHhcCcCh------hHcCCcccEEEEecCCCCCHHHHHHH
Confidence 12222232222211 12234579999999999998776543
No 33
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.77 E-value=1.6e-18 Score=171.73 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=107.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCc-c-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTN-V-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~-v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
...+.|+|+|++|+|||||+++|++.. + ......|+|..+....+.. .....++||||||+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP---------------AAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC---------------TTSCSEEEEECCCCCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC---------------CCCCcEEEEcCCCCCc
Confidence 456779999999999999999999876 2 2333445554433222220 1224599999999743
Q ss_pred ----------chhh---hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHH
Q 036359 373 ----------FTNL---RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 373 ----------f~~~---~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
|..+ ..+....+|++|||||+++++.......+..+...++|+|+|+||+|+.. ...+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~------~~~~~-- 163 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT------RQESI-- 163 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC------HHHHH--
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC------hhhHH--
Confidence 2222 23345568999999999999888888888888889999999999999963 11111
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+..+...|... +. ......++++++||+++.++.+++..
T Consensus 164 -------------~~~~~~~~~l~~~-------~~-~~~~~~~~~~~~SA~~g~gv~~l~~~ 204 (223)
T 4dhe_A 164 -------------NALRATQKSLDAY-------RD-AGYAGKLTVQLFSALKRTGLDDAHAL 204 (223)
T ss_dssp -------------HHHHHHHHHHHHH-------HH-HTCCSCEEEEEEBTTTTBSHHHHHHH
T ss_pred -------------HHHHHHHHHHHhh-------hh-cccCCCCeEEEeecCCCcCHHHHHHH
Confidence 1111222222211 00 00124579999999999998876654
No 34
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=6.9e-19 Score=185.31 Aligned_cols=156 Identities=21% Similarity=0.325 Sum_probs=110.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
..+.+|+|+|++|+|||||+|+|++..+. .....++|.+.....+.... ...++||||||+..+
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~---------------~~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN---------------EAQIIFLDTPGIYEP 72 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT---------------TEEEEEEECCCCCCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC---------------CCeEEEEECcCCCcc
Confidence 45667999999999999999999998765 23344555443333332220 234899999999765
Q ss_pred h----------hhhhcCCCCCceeeEeecccCCCchhHHHH-HHHHHhcCCceEEEecccccccCcccCCCccHHHHHHh
Q 036359 374 T----------NLRSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQ 442 (657)
Q Consensus 374 ~----------~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~ 442 (657)
. ..+..++..+|++|+|||++++...++... +..+...++|+|+|+||+|+... ...+
T Consensus 73 ~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~-----~~~~------ 141 (308)
T 3iev_A 73 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGP-----AKNV------ 141 (308)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSS-----GGGG------
T ss_pred ccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCC-----HHHH------
Confidence 4 455567788999999999999998888888 77888889999999999999620 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 443 QSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 443 q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+..+... ++...++||+||++|.++.+++..
T Consensus 142 -------------~~~~~~l~~~------------~~~~~~i~~vSA~~g~gv~~L~~~ 175 (308)
T 3iev_A 142 -------------LPLIDEIHKK------------HPELTEIVPISALKGANLDELVKT 175 (308)
T ss_dssp -------------HHHHHHHHHH------------CTTCCCEEECBTTTTBSHHHHHHH
T ss_pred -------------HHHHHHHHHh------------ccCCCeEEEEeCCCCCCHHHHHHH
Confidence 1122222221 113468999999999988776653
No 35
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=2e-18 Score=181.32 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=87.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES- 372 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~- 372 (657)
.+...|+|+|++|+|||||+|+|++..+.. ....+.|.+.-...+.. ....++||||||+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~----------------~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE----------------GRRQIVFVDTPGLHKP 68 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE----------------TTEEEEEEECCCCCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe----------------CCcEEEEecCccccch
Confidence 567789999999999999999999987642 22233343211111111 123589999999877
Q ss_pred -------chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc--CCceEEEecccccc
Q 036359 373 -------FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER--SVDFIIALSKADKL 425 (657)
Q Consensus 373 -------f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~--~vPiIvvlNKiDl~ 425 (657)
|......++..+|++|+|||+++++...+...+..+... ++|+|+|+||+|+.
T Consensus 69 ~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 69 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 445566788999999999999999888877777778777 89999999999996
No 36
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=5.9e-18 Score=164.01 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=80.6
Q ss_pred hccCCCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 292 EENLRSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 292 ~~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
+.....+.|+|+|++|+|||||+++|++..+.. .. ..+++.....+. .....+.||||||+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~----~~t~~~~~~~~~--------------~~~~~~~i~Dt~G~ 73 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI----TATVGYNVETFE--------------KGRVAFTVFDMGGA 73 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CC----CCCSSEEEEEEE--------------ETTEEEEEEEECCS
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc----ccccceeEEEEE--------------eCCEEEEEEECCCC
Confidence 344566779999999999999999999887654 21 222332222211 11234899999999
Q ss_pred CcchhhhhcCCCCCceeeEeecccCCCchhHH-HHHHHHHhc-----------CCceEEEeccccccc
Q 036359 371 ESFTNLRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKER-----------SVDFIIALSKADKLY 426 (657)
Q Consensus 371 ~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~~-----------~vPiIvvlNKiDl~~ 426 (657)
..|..++..++..+|++|||||++++...... ..+..+... ++|+|||+||+|+..
T Consensus 74 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 99999999999999999999999985432222 333333332 899999999999964
No 37
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.74 E-value=3.8e-18 Score=175.10 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=84.9
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh--
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN-- 375 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~-- 375 (657)
|.|+|+|++|+|||||+|+|++.....+..+|+|.......+.+.. ..+.||||||+.+|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~----------------~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE----------------HLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT----------------EEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC----------------eEEEEEeCCCcccccccc
Confidence 4599999999999999999999887666677777655444444332 2489999999988864
Q ss_pred --------hhhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 376 --------LRSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 --------~~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+...++ ..+|++|+|||+++ .......+.++...++|+|+|+||+|+..
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 333344 78999999999998 23344455677788999999999999863
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.73 E-value=6.5e-18 Score=161.01 Aligned_cols=117 Identities=21% Similarity=0.201 Sum_probs=81.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+......+++.++....+.+.. ....+.||||||+..|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 76 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND--------------ATVKFEIWDTAGQERYHS 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT--------------EEEEEEEEECCCSGGGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC--------------EEEEEEEEeCCCChhhhh
Confidence 445699999999999999999998776543333332222222222211 012489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhH-HHHHHHHHhc---CCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQT-IESLDLLKER---SVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l~~~---~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|++++...+. ..++..+... ++|+|+|+||+|+..
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 88888999999999999987433222 2233333333 788999999999963
No 39
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.73 E-value=1e-17 Score=161.66 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccc----------hhhcccc------------
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQK----------RTEKLNA------------ 353 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~----------~~~~~~~------------ 353 (657)
....|+|+|++|+|||||+++|++..+.....+.++..+....+.+..... ....+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 345699999999999999999998876543333222222222222221100 0000000
Q ss_pred -ccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHH-hcCCceEEEecccccccCccc
Q 036359 354 -DAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK-ERSVDFIIALSKADKLYGWKS 430 (657)
Q Consensus 354 -~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~-~~~vPiIvvlNKiDl~~~w~~ 430 (657)
........+.||||||+..|..++..++..+|++|||+|++++...+... ++..+. ..++|+|+|+||+| ...+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~~~-- 162 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID-KNKF-- 162 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC-C--
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cccc--
Confidence 00000145899999999999988888899999999999999854333332 222333 35689999999999 3211
Q ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 431 CKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 431 ~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
... ...+...+... .++++++||+++.++.+.+..
T Consensus 163 --~~~-------------------~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~ 197 (208)
T 3clv_A 163 --QVD-------------------ILEVQKYAQDN---------------NLLFIQTSAKTGTNIKNIFYM 197 (208)
T ss_dssp --CSC-------------------HHHHHHHHHHT---------------TCEEEEECTTTCTTHHHHHHH
T ss_pred --cCC-------------------HHHHHHHHHHc---------------CCcEEEEecCCCCCHHHHHHH
Confidence 111 11222222221 258999999999988776543
No 40
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.73 E-value=6.1e-18 Score=175.08 Aligned_cols=113 Identities=25% Similarity=0.312 Sum_probs=84.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+|+|++..+..+..+|+|.......+.+. ...+.||||||+.+|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~----------------~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT----------------DHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS----------------SCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC----------------CCceEEEECcCCCcccc
Confidence 45679999999999999999999988766666777765444444332 23589999999988763
Q ss_pred h----------hhcC--CCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 376 L----------RSWG--PGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~----------~~~g--~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
. ...+ ...+|++|+|||+++ .......+..+...++|+|+|+||+|+..
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 2 1112 268999999999988 23444455677778999999999999863
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.73 E-value=1.4e-17 Score=159.72 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=82.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+.......++..+....+.+... ...+.||||||+..|..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~~~ 74 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK--------------YVKLQIWDTAGQERFRS 74 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTE--------------EEEEEEEEECCSGGGHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCCcHHHHH
Confidence 3456999999999999999999987765443333333332222222110 12489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHH----HHHHhcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|++++...+....| ..+...++|+|+|+||+|+..
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999999999999999999984332222222 222235789999999999963
No 42
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=9e-18 Score=162.42 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=98.8
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccc--cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC---
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQE--GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG--- 369 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~--~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG--- 369 (657)
.+.+.|+|+|++|+|||||+++|++..+.. ....|.|..+... ... ..+.||||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-----------------~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IIN-----------------DELHFVDVPGYGF 81 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EET-----------------TTEEEEECCCBCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EEC-----------------CcEEEEECCCCCc
Confidence 356779999999999999999999876321 2223333322211 111 2489999999
Q ss_pred -------CCcchhhhhcCC---CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHH
Q 036359 370 -------HESFTNLRSWGP---GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 370 -------h~~f~~~~~~g~---~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
+..|..++..++ ..+|++|+|+|++++........+..+...++|+|+|+||+|+.. ...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~------~~~~~-- 153 (195)
T 1svi_A 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP------KGKWD-- 153 (195)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC------GGGHH--
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC------hHHHH--
Confidence 444544444444 445999999999998888877777788888999999999999963 11111
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
.....+...|. . ...++++++||+++.++.+.+..
T Consensus 154 -------------~~~~~~~~~~~---~-----------~~~~~~~~~Sa~~~~gv~~l~~~ 188 (195)
T 1svi_A 154 -------------KHAKVVRQTLN---I-----------DPEDELILFSSETKKGKDEAWGA 188 (195)
T ss_dssp -------------HHHHHHHHHHT---C-----------CTTSEEEECCTTTCTTHHHHHHH
T ss_pred -------------HHHHHHHHHHc---c-----------cCCCceEEEEccCCCCHHHHHHH
Confidence 01112222221 1 12478999999999998876543
No 43
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.72 E-value=1.2e-17 Score=175.21 Aligned_cols=114 Identities=23% Similarity=0.292 Sum_probs=86.3
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC--
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE-- 371 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~-- 371 (657)
.+.++|+|+||+|+|||||+|+|++..+.. ....+.|.+.....+.+. ...++|||||||.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~----------------~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG----------------AYQAIYVDTPGLHME 69 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET----------------TEEEEEESSSSCCHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC----------------CeeEEEEECcCCCcc
Confidence 567789999999999999999999987542 222334432222222221 2348999999997
Q ss_pred -------cchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 372 -------SFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 372 -------~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.|......++..+|++++|+|+++ +.+++...+..+...++|+|+|+||+|+.
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 233445677889999999999988 88888888888888899999999999996
No 44
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=158.89 Aligned_cols=116 Identities=19% Similarity=0.118 Sum_probs=80.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|++|+|||||+++|++..+......+++.++....+.+... ...+.||||||+..|..+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~ 74 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE--------------KVKLQIWDTAGQERFRTI 74 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE--------------EEEEEEEEETTGGGCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE--------------EEEEEEEcCCCchhhhhh
Confidence 355999999999999999999988766444444444443333333211 023899999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh--cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++...+... ++..+.. .++|+|+|+||+|+..
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 888999999999999999843222222 2222222 2589999999999864
No 45
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.72 E-value=9.9e-18 Score=158.00 Aligned_cols=152 Identities=22% Similarity=0.185 Sum_probs=99.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|.+..+... ..+++.....+. +....+.||||||+..|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~--------------~~~~~~~~~Dt~G~~~~~~ 66 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVT--------------YKNLKFQVWDLGGLTSIRP 66 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEE--------------ETTEEEEEEEECCCGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEE--------------ECCEEEEEEECCCChhhhH
Confidence 345699999999999999999987665321 112222211111 1123489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHHHHH-Hh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLL-KE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l-~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|||+|++++...... ..+..+ .. .++|+|+|+||+|+.. ..+.
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------~~~~-------------- 126 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ------AMTS-------------- 126 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT------CCCH--------------
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC------CCCH--------------
Confidence 998899999999999999986432222 233322 22 5789999999999963 1111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+....+. ...++++++||+++.++.+.+.+
T Consensus 127 -----~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 127 -----SEMANSLGLPALK----------DRKWQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp -----HHHHHHHTGGGCT----------TSCEEEEECCTTTCTTHHHHHHH
T ss_pred -----HHHHHHhCchhcc----------CCceEEEECcCCCCcCHHHHHHH
Confidence 1122222111010 13468999999999998876543
No 46
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.72 E-value=1.2e-17 Score=160.75 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=102.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC----
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG---- 369 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG---- 369 (657)
...+.|+|+|++|+|||||+++|++..+. .....|.|..+..... ...++||||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-------------------NSKYYFVDLPGYGYA 81 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-------------------TTTEEEEECCCBSSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE-------------------CCcEEEEECCCCccc
Confidence 34567999999999999999999987633 1222333332221111 12489999999
Q ss_pred ------CCcchhhh---hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHH
Q 036359 370 ------HESFTNLR---SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKAL 440 (657)
Q Consensus 370 ------h~~f~~~~---~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L 440 (657)
+..|..++ .+....+|++|+|+|++.+........+..+...++|+|+|+||+|+.. .....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~------~~~~~--- 152 (195)
T 3pqc_A 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK------MSERA--- 152 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC------GGGHH---
T ss_pred cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC------hHHHH---
Confidence 33344333 3344567999999999998888888888888888999999999999963 11111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 441 EQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 441 ~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
.....+...+... ..++++++||+++.++.+.+..
T Consensus 153 ------------~~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~ 187 (195)
T 3pqc_A 153 ------------KKLEEHRKVFSKY--------------GEYTIIPTSSVTGEGISELLDL 187 (195)
T ss_dssp ------------HHHHHHHHHHHSS--------------CCSCEEECCTTTCTTHHHHHHH
T ss_pred ------------HHHHHHHHHHhhc--------------CCCceEEEecCCCCCHHHHHHH
Confidence 0111222222211 2468999999999998886654
No 47
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=2e-17 Score=155.81 Aligned_cols=116 Identities=23% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.......++..+....+.+.. ....+.||||||+..|..+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~ 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG--------------KRVNLAIWDTAGQERFHAL 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS--------------CEEEEEEEECCCC------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECC--------------EEEEEEEEECCCcHhhhhh
Confidence 35699999999999999999998766543333332222222222211 0124889999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHH---hcCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++...+... ++..+. ..++|+|+|+||+|+..
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 888999999999999998843222222 222222 25789999999999964
No 48
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.72 E-value=1.5e-17 Score=156.15 Aligned_cols=117 Identities=18% Similarity=0.139 Sum_probs=78.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.......++..+....+.+.. ....+.||||||+..|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD--------------TTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC--------------EEEEEEEEeCCCcHHhhh
Confidence 345699999999999999999997765432222221111111111111 012489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|+|+|++++...+... ++..+.. .++|+|+|+||+|+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 8888899999999999998743222222 2233332 3688999999999964
No 49
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=1.3e-17 Score=160.19 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=100.1
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
...+...|+|+|++|+|||||+++|++..+.. ....++.....+. +....+.||||||+..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~t~~~~~~~~~--------------~~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-----TSPTIGSNVEEIV--------------INNTRFLMWDIGGQES 77 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEE-----EECCSSSSCEEEE--------------ETTEEEEEEEESSSGG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCc-----cCCcCceeeEEEE--------------ECCEEEEEEECCCCHh
Confidence 33556779999999999999999999876521 1222232111111 1123589999999999
Q ss_pred chhhhhcCCCCCceeeEeecccCCCchhH-HHHHHHHH----hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHH
Q 036359 373 FTNLRSWGPGLCDIAILVVDIMDGIKPQT-IESLDLLK----ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDV 447 (657)
Q Consensus 373 f~~~~~~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l~----~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~ 447 (657)
|..++..++..+|++|||+|++++...+. ...+..+. ..++|+|+|+||+|+.. ..+.
T Consensus 78 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~------~~~~----------- 140 (181)
T 2h17_A 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE------CMTV----------- 140 (181)
T ss_dssp GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT------CCCH-----------
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc------CCCH-----------
Confidence 99888889999999999999998643332 22333332 25789999999999963 1110
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 448 EDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 448 ~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+ ++.. . ....++++++||+++.++.+.+..
T Consensus 141 --------~~i~~~~---~~~~---~----~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 141 --------AEISQFL---KLTS---I----KDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp --------HHHHHHT---TGGG---C----CSSCEEEEECBTTTTBTHHHHHHH
T ss_pred --------HHHHHHh---Cccc---c----cCCceEEEEccCCCCcCHHHHHHH
Confidence 1121111 1110 0 013468999999999998876643
No 50
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.72 E-value=5.7e-18 Score=174.65 Aligned_cols=112 Identities=24% Similarity=0.267 Sum_probs=85.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+..+...|+|.......+.+.. ..+.||||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE----------------KEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT----------------EEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC----------------ceEEEEeCCCcccccc
Confidence 345699999999999999999999887766677777665544444332 2389999999998865
Q ss_pred ------hhhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcC-CceEEEecccccc
Q 036359 376 ------LRSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERS-VDFIIALSKADKL 425 (657)
Q Consensus 376 ------~~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~-vPiIvvlNKiDl~ 425 (657)
....++ ..+|++|+|+|++++ ......+..+...+ +|+|+|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 233333 679999999999984 34555556667777 9999999999985
No 51
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.71 E-value=5.1e-18 Score=158.38 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=80.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc---
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF--- 373 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f--- 373 (657)
+.|+|+|++|+|||||+++|.+..+. .....++|.......+.+. ...+.||||||+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~Dt~G~~~~~~~ 65 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD----------------RGRFLLVDTGGLWSGDKW 65 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET----------------TEEEEEEECGGGCSSSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC----------------CceEEEEECCCCCCccch
Confidence 35999999999999999999976643 2223344433322222221 124899999999873
Q ss_pred ----hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 374 ----TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 374 ----~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
...+...+..+|++|||+|++++........+..+...++|+|+|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 34455678899999999999998877666666777778999999999999963
No 52
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2e-17 Score=155.24 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.....+.++..+....+.+.. ....+.||||||+..|..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~G~~~~~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE--------------HTVKFEIWDTAGQERFASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEECCCChhhhhh
Confidence 34599999999999999999998765433222222222112222211 0124899999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHH---hcCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|+|+|++++....... ++..+. ..++|+|+|+||+|+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 888899999999999999843222222 222222 23789999999999974
No 53
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=160.89 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=99.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
.+.+.|+|+|++|+|||||+++|++... ... ....++.....+ .++...+.||||||+..|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~~t~~~~~~~~--------------~~~~~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN----ILPTIGFSIEKF--------------KSSSLSFTVFDMSGQGRY 80 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS----CCCCSSEEEEEE--------------ECSSCEEEEEEECCSTTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC----cCCccceeEEEE--------------EECCEEEEEEECCCCHHH
Confidence 4567799999999999999999998762 222 112223221111 112245999999999999
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhH-HHHHHHH-Hh-----cCCceEEEecccccccCcccCCCccHHHHHHhhhHH
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQT-IESLDLL-KE-----RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKD 446 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l-~~-----~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~ 446 (657)
..++..++..+|++|||+|++++...+. ...+..+ .. .++|+|+|+||+|+.. ..+.
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------~~~~---------- 144 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD------AVTS---------- 144 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT------CCCH----------
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc------CCCH----------
Confidence 9998889999999999999988322111 1223222 22 4789999999999963 1111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 447 VEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 447 ~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+....+. ...++++++||+++.++.+.+..
T Consensus 145 ---------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~ 180 (190)
T 2h57_A 145 ---------VKVSQLLCLENIK----------DKPWHICASDAIKGEGLQEGVDW 180 (190)
T ss_dssp ---------HHHHHHHTGGGCC----------SSCEEEEECBTTTTBTHHHHHHH
T ss_pred ---------HHHHHHhChhhcc----------CCceEEEEccCCCCcCHHHHHHH
Confidence 1122222111111 13578999999999998876654
No 54
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=1.3e-17 Score=158.04 Aligned_cols=116 Identities=22% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|++|+|||||+++|++..+.....+.++.++....+.+.. ....+.||||||+..|..+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~~~~~ 80 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG--------------QKIKLQIWDTAGQERFRAV 80 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETT--------------EEEEEEEEECTTGGGTCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC--------------eEEEEEEEECCCChHhhhh
Confidence 45599999999999999999998775433222222122111222111 0124899999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHH-HHHHH---hcCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++........ +..+. ..++|+|+|+||+|+..
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 8888899999999999998533332222 22222 25789999999999963
No 55
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.71 E-value=1.6e-17 Score=157.45 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
++...|+|+|++|+|||||+++|++..+.....++++.++....+.+... ...+.||||||+..|.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~ 77 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--------------TVRLQLWDTAGQERFR 77 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCe--------------EEEEEEEECCCcHHHH
Confidence 34456999999999999999999977665443333333222222222110 1248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHH-HHHHHHH---hcCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|++++...... .++..+. ..++|+|+|+||+|+..
T Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp GGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 8888888999999999999873222222 2222222 24789999999999964
No 56
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.71 E-value=3.2e-17 Score=155.59 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=78.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|++|+|||||+++|++..+.....+.++..+....+.+.. ....+.||||||+..|..+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~ 72 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG--------------HFVTMQIWDTAGQERFRSL 72 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETT--------------EEEEEEEEECCCCGGGHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECC--------------EEEEEEEEeCCCchhhhhh
Confidence 45699999999999999999998765433222222222112222211 0124899999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHH-HHHH---h----cCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK---E----RSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~---~----~~vPiIvvlNKiDl~ 425 (657)
+..++..+|++|+|+|++++...+....| ..+. . .++|+|+|+||+|+.
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 73 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 98999999999999999984432222222 2222 1 578999999999986
No 57
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.71 E-value=1.5e-17 Score=158.13 Aligned_cols=118 Identities=17% Similarity=0.075 Sum_probs=78.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.++.++....+.+... ....+.||||||+..|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-------------~~~~~~~~Dt~G~~~~~~ 71 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN-------------LNVTLQIWDIGGQTIGGK 71 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTT-------------EEEEEEEEECTTCCTTCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCCccccc
Confidence 4566999999999999999999987654221121111111111221110 012489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh-----cCCc-eEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE-----RSVD-FIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~-----~~vP-iIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|++++...+... ++..+.. .+.| +|+|+||+|+..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 72 MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 8888899999999999998843322222 2233333 2566 899999999963
No 58
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.71 E-value=3e-17 Score=158.53 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=79.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.......++.++....+.... ....+.||||||+..|..+
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~~~~~ 87 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD--------------KRIKLQIWDTAGQERYRTI 87 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT--------------EEEEEEEEECCSCCSSCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC--------------eEEEEEEEeCCCcHHHhhh
Confidence 34599999999999999999998775433222222111111111110 0124899999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh---cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++...... .++..+.. .++|+|+|+||+|+..
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 98999999999999999874322222 23333443 3789999999999964
No 59
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=1.5e-17 Score=159.18 Aligned_cols=115 Identities=19% Similarity=0.118 Sum_probs=55.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||+++|++..+.....++++.++....+.+... ...+.||||||+..|..++
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~~~~~ 74 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK--------------RIKLQIWDTAGQERFRTIT 74 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTE--------------EEEEEEEEC---------C
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCE--------------EEEEEEEcCCCChhhhhhH
Confidence 45999999999999999999977654332233332222222222110 1248999999999999888
Q ss_pred hcCCCCCceeeEeecccCCCchhHH-HHHHHHHh---cCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
..++..+|++|||+|++++...... .++..+.. .++|+|+|+||+|+..
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 8899999999999999883322222 22233333 3789999999999963
No 60
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.71 E-value=1.8e-17 Score=155.44 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=78.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.......++.++....+.+.. ....+.||||||+..|..+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~~~~~ 70 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND--------------EDVRLMLWDTAGQEEFDAI 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT--------------EEEEEEEECCTTGGGTTCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECC--------------EEEEEEEEcCCCcHhHHHH
Confidence 45699999999999999999998765433222222222111222111 0124899999999999888
Q ss_pred hhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh--cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|+|+|++++...+.. .++..+.. .++|+|+|+||+|+..
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 88888999999999999883322222 12222222 3789999999999963
No 61
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=2.3e-17 Score=154.14 Aligned_cols=116 Identities=22% Similarity=0.179 Sum_probs=77.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.++... ...+.+.. ....+.||||||+..|..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDS--------------SPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCCTTCCHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECC--------------EEEEEEEEECCCchhhHH
Confidence 345699999999999999999997765432222111110 11111111 012388999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHH----HhcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLL----KERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l----~~~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|+|+|++++...+... .+..+ ...++|+|+|+||+|+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 8888889999999999998733222121 22222 224799999999999863
No 62
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.70 E-value=2.2e-17 Score=154.76 Aligned_cols=149 Identities=21% Similarity=0.190 Sum_probs=96.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRS 378 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~ 378 (657)
.|+|+|++|+|||||+++|++..+... ..+++.....+ .+....+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~--------------~~~~~~~~i~Dt~G~~~~~~~~~ 62 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV--------------EYKNISFTVWDVGGQDKIRPLWR 62 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEE--------------ECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEE--------------EECCEEEEEEEcCCChhhHHHHH
Confidence 489999999999999999987665421 11222111111 11224599999999999998888
Q ss_pred cCCCCCceeeEeecccCCCchhH-HHHHHHHHh----cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHHHHH
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQT-IESLDLLKE----RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDEFKM 453 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l~~----~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~ 453 (657)
.++..+|++|||+|++++..... ...+..+.. .++|+|+|+||+|+.. ..+.
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------~~~~----------------- 119 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN------AMNA----------------- 119 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT------CCCH-----------------
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC------CCCH-----------------
Confidence 88999999999999988432221 122332222 3789999999999963 1110
Q ss_pred HHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 454 RLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 454 ~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+ ++.. . ....++++++||+++.++.+.+..
T Consensus 120 --~~~~~~~---~~~~---~----~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 120 --AEITDKL---GLHS---L----RHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp --HHHHHHT---TGGG---C----SSCCEEEEECBTTTTBTHHHHHHH
T ss_pred --HHHHHHh---Cccc---c----cCccEEEEEcccCCCcCHHHHHHH
Confidence 1121111 1110 0 013468999999999998876654
No 63
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.70 E-value=4.1e-17 Score=156.64 Aligned_cols=126 Identities=16% Similarity=0.055 Sum_probs=80.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeecc-ceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIG-ATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig-~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
+...|+|+|++|+|||||+++|++..+.......++.++. ...+.+.... .... .......+.||||||+..|.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP--DGAV---GRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSC--CCSS---CCCEEEEEEEEEECCSGGGH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCc--cccc---ccCcEEEEEEEeCCCcHHHH
Confidence 3456999999999999999999987654332222221111 1111111100 0000 00001248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh----cCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|++++...+... ++..+.. .++|+|+|+||+|+..
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999998843333322 2233332 5789999999999963
No 64
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=159.27 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=82.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|++|+|||||+++|++..+......+++.++....+.+... ...+.||||||+..|..+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~ 81 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK--------------TIKLQIWDTAGQERFRTI 81 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE--------------EEEEEEEECCCcHhhhhh
Confidence 345999999999999999999987765544444443333333332210 124899999999999998
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|+++....+... ++..+.. .++|+|+|+||+|+..
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 888999999999999999833222222 2222322 3789999999999964
No 65
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=159.02 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=79.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+.......++..+....+.+.. ....+.||||||+..|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 89 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT--------------AAVKAQIWDTAGLERYRA 89 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT--------------EEEEEEEEEESCCCTTCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCCchhhhh
Confidence 345699999999999999999998776532222111111111111110 112489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh---cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|++++...... .++..+.. .++|+|+|+||+|+..
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 888889999999999999884332222 23333333 3789999999999964
No 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.70 E-value=3.3e-17 Score=160.38 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=81.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|++|+|||||+++|++..+.....++++.++....+.+... ...+.||||||+..|..+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~~~~ 73 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK--------------TVKLQIWDTAGQERFRTI 73 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE--------------EEEEEEECCTTTTTTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE--------------EEEEEEEeCCChHHHHHH
Confidence 355999999999999999999987765443333333222222222110 124899999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHH-HHHHHh---cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++...+.... +..+.. .++|+|+|+||+|+..
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 8889999999999999988433222222 223332 3689999999999964
No 67
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.70 E-value=4.4e-17 Score=158.96 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=78.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||+++|++..+.......++..+....+.+.. ....+.||||||+..|..++
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~~~~~~ 74 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND--------------KRIKLQIWDTAGLERYRTIT 74 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC--------------eEEEEEEEECCCchhhcchH
Confidence 4599999999999999999998776433222221111111111111 01248999999999999999
Q ss_pred hcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
..++..+|++|||+|++++....... ++..+.. .++|+|+|+||+|+..
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 99999999999999998843222222 2233333 4789999999999963
No 68
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.70 E-value=4.4e-17 Score=155.64 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=75.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~Dt~G~~~~~~ 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNG--------------QEYHLQLVDTAGQDEYSI 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCCCCTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECC--------------EEEEEEEEeCCCchhhhH
Confidence 345699999999999999999996654432222111111 11111111 012478999999999988
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHH----HH----HhcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLD----LL----KERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l----~~~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|+|+|+++ +.+.+.+. .+ ...++|+|+|+||+|+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTS---IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred HHHHHHhcCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 88888999999999999987 33333321 12 234789999999999853
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.70 E-value=2.3e-17 Score=157.68 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=78.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDG--------------KPVNLGLWDTAGQEDYDR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETT--------------EEEEEEEECCCCSGGGTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECC--------------EEEEEEEEECCCCHhHHH
Confidence 445699999999999999999997665432211111000 00111110 012378999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH--HHHHHHhc--CCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE--SLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|++++...+... ++..+... ++|+|+|+||+|+..
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 8888999999999999998843333322 23334433 899999999999963
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=161.36 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|++|+|||||+++|++..+.......++.++....+.+... ...+.||||||+..|..+
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~l~Dt~G~~~~~~~ 91 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK--------------KIRLQIWDTAGQERFNSI 91 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTE--------------EEEEEEEEECCSGGGHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCe--------------EEEEEEEeCCCcHHHHHH
Confidence 455999999999999999999987765332222222222222222110 124899999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHH-HHHHh---cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++...+....| ..+.. .++|+|+|+||+|+..
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 88888999999999999985433333222 23332 3789999999999964
No 71
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.70 E-value=3.6e-17 Score=159.66 Aligned_cols=116 Identities=22% Similarity=0.211 Sum_probs=80.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....++++.++....+.+.. ....+.||||||+..|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD--------------RLVTMQIWDTAGQERFQS 72 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS--------------CEEEEEEEEECSSGGGSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC--------------EEEEEEEEeCCCcHHHHH
Confidence 345699999999999999999998776543333333222222222211 112489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHH-HHHHh-------cCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE-------RSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~-------~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|||+|++++........| ..+.. .++|+|+|+||+|+.
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 888889999999999999884332222222 22211 478999999999996
No 72
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.70 E-value=1.8e-16 Score=154.41 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=98.8
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
..+.+.|+|+|..|+|||||+++|.+.... ....|++.......+.+.. .....+.||||||+..|
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~ 82 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTNKIYKDDISN-------------SSFVNFQIWDFPGQMDF 82 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCG-GGGGGCCCCCSCEEEEECC-------------TTSCCEEEEECCSSCCT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCC-cceeeeccccceeeeeccC-------------CCeeEEEEEECCCCHHH
Confidence 345667999999999999999988874322 2222222212111111110 11235999999999999
Q ss_pred hhhh---hcCCCCCceeeEeecccCCCchhHHHHH-HHHH-----hcCCceEEEecccccccCcccCCCccHHHHHHhhh
Q 036359 374 TNLR---SWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK-----ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQS 444 (657)
Q Consensus 374 ~~~~---~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~-----~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~ 444 (657)
..++ ..++..+|++|||+|+++++ ..+...| .++. ..++|+|+|+||+|++. .+. .+..
T Consensus 83 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~-------~~~--~~~~-- 150 (196)
T 3llu_A 83 FDPTFDYEMIFRGTGALIYVIDAQDDY-MEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS-------DDH--KIET-- 150 (196)
T ss_dssp TCTTCCHHHHHHTCSEEEEEEETTSCC-HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC-------HHH--HHHH--
T ss_pred HhhhhhcccccccCCEEEEEEECCCch-HHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc-------hhh--hhHH--
Confidence 7776 67888899999999999863 3343333 2222 23789999999999963 100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 445 KDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 445 ~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
...........+...+.. ...++++++||++ .++.+.+.
T Consensus 151 ------~~~v~~~~~~~~~~~~~~----------~~~~~~~e~Sa~~-~~v~~~f~ 189 (196)
T 3llu_A 151 ------QRDIHQRANDDLADAGLE----------KLHLSFYLTSIYD-HSIFEAFS 189 (196)
T ss_dssp ------HHHHHHHHHHHHHHTTCT----------TSCEEEEEECTTS-THHHHHHH
T ss_pred ------HhHHHHHHHHHHHHhhhh----------cCCcceEEEEech-hhHHHHHH
Confidence 001111223334332221 1347899999999 99887654
No 73
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=2.8e-17 Score=157.12 Aligned_cols=152 Identities=23% Similarity=0.224 Sum_probs=96.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.. ...+++.....+. +....+.||||||+..|..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~ 77 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVT-----TKPTIGFNVETLS--------------YKNLKLNVWDLGGQTSIRP 77 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEE-----ECSSTTCCEEEEE--------------ETTEEEEEEEEC----CCT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCc-----cCCcCccceEEEE--------------ECCEEEEEEECCCCHhHHH
Confidence 45669999999999999999999776521 1112222111110 1123489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhH-HHHHHHHH----hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQT-IESLDLLK----ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l~----~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|+|+|++++...+. ...+..+. ..++|+|+|+||+|+.. ..+
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------~~~--------------- 136 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG------ALS--------------- 136 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT------CCC---------------
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC------CCC---------------
Confidence 88889999999999999988543222 23333333 35789999999999963 111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+....+. ...++++++||+++.++.+.+.+
T Consensus 137 ----~~~i~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 137 ----ASEVSKELNLVELK----------DRSWSIVASSAIKGEGITEGLDW 173 (183)
T ss_dssp ----HHHHHHHTTTTTCC----------SSCEEEEEEBGGGTBTHHHHHHH
T ss_pred ----HHHHHHHhCccccc----------CCceEEEEccCCCCcCHHHHHHH
Confidence 01122222111111 13468999999999998876643
No 74
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.70 E-value=1.8e-17 Score=155.78 Aligned_cols=114 Identities=19% Similarity=0.152 Sum_probs=76.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||+++|++..+.....++++.++....+.+... ...+.||||||+..|..++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~G~~~~~~~~ 69 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK--------------KVKLQIWDTAGQERFRTIT 69 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSC--------------EEEEEEECCTTGGGTSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEeCCCChhhhhhH
Confidence 35999999999999999999987764333333332222222222110 1248999999999998888
Q ss_pred hcCCCCCceeeEeecccCCCchhHH-HHHHHHHh---cCCceEEEecccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~---~~vPiIvvlNKiDl~ 425 (657)
..++..+|++|||+|++++...... .++..+.. .++|+|+|+||+|+.
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 8888999999999999874332222 22233332 378999999999984
No 75
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.2e-17 Score=158.24 Aligned_cols=115 Identities=24% Similarity=0.280 Sum_probs=79.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccc--cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGE--AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~--~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
+...|+|+|++|+|||||+++|++..+.... ..|++.. ...+.+.. ....+.||||||+..|
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------~~~~~~i~Dt~G~~~~ 85 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGN--------------ELHKFLIWDTAGQERF 85 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSS--------------SEEEEEEEEECCSGGG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCC--------------EEEEEEEEcCCCchhh
Confidence 3456999999999999999999987654221 1122211 11111110 1124899999999999
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
..++..++..+|++|||+|+++....+... ++..+.. .++|+|+|+||+|+..
T Consensus 86 ~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 86 HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 988888899999999999998844333222 2233333 2789999999999963
No 76
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=1.1e-17 Score=184.26 Aligned_cols=157 Identities=19% Similarity=0.300 Sum_probs=105.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC----
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH---- 370 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh---- 370 (657)
..+.|+|+|++|+|||||+|+|++.... .+...|+|.+.....+.+.. ..++|||||||
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~----------------~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ----------------QEFVIVDTAGMRKKG 237 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT----------------EEEEETTHHHHTCBT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC----------------eEEEEEECCCcCcCc
Confidence 3456999999999999999999987643 45556777665544444332 23899999998
Q ss_pred ------Ccchhhhh-cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhh
Q 036359 371 ------ESFTNLRS-WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQ 443 (657)
Q Consensus 371 ------~~f~~~~~-~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q 443 (657)
+.|..++. .++..+|++|||+|++++...|+..++..+...++|+|+|+||+|+... ... .
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~------~~~--~---- 305 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK------DES--T---- 305 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC------CTT--H----
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc------chH--H----
Confidence 44444433 4677899999999999999999998888888889999999999999741 110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 444 SKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 444 ~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+... +. +...++++++||++|.++.+.+..
T Consensus 306 -----------~~~~~~~~~~~-l~---------~~~~~~~~~~SA~tg~~v~~l~~~ 342 (436)
T 2hjg_A 306 -----------MKEFEENIRDH-FQ---------FLDYAPILFMSALTKKRIHTLMPA 342 (436)
T ss_dssp -----------HHHHHHHHHHH-CG---------GGTTSCEEECCTTTCTTGGGHHHH
T ss_pred -----------HHHHHHHHHHh-cc---------cCCCCCEEEEecccCCCHHHHHHH
Confidence 01111222111 00 012468999999999998886653
No 77
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.70 E-value=3.4e-17 Score=153.45 Aligned_cols=116 Identities=21% Similarity=0.122 Sum_probs=77.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.+...+. ..+.+. .....+.||||||+..|..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--------------~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVD--------------CQQCMLEILDTAGTEQFTA 66 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESS--------------SCEEEEEEEEECSSCSSTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEEC--------------CEEEEEEEEECCChHHHHH
Confidence 3456999999999999999999986654332221111110 011111 0112489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHHH----hcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~----~~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|+|+|+++........ ++..+. ..++|+|+|+||+|+..
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 8888888999999999998732212211 222222 24789999999999964
No 78
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=2.8e-17 Score=156.23 Aligned_cols=117 Identities=25% Similarity=0.232 Sum_probs=70.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+.....+.++.++....+.+.. .....+.||||||+..|..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~~~ 73 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG-------------DKVATMQVWDTAGQERFQS 73 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS-------------SCCEEEEEECCC-------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC-------------CcEEEEEEEECCCChHhhh
Confidence 345699999999999999999998776543333332222222222210 0112489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHH-HHHHh-------cCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE-------RSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~-------~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|||+|++++........| ..+.. .++|+|+|+||+|+.
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 888899999999999999884332222222 22221 578999999999985
No 79
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.3e-17 Score=154.53 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=72.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccc-cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQE-GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~-~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
+...|+|+|++|+|||||+++|++..+.. ....+++.++....+.+... ...+.||||||+..|.
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~ 74 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV--------------KVKLQMWDTAGQERFR 74 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE--------------EEEEEEEECCCC----
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE--------------EEEEEEEeCCCcHHHH
Confidence 34569999999999999999999877642 21222222222112222110 1248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|++++...+... ++..+.. .++|+|+|+||+|+..
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 88888999999999999998843322222 2233332 5789999999999964
No 80
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.70 E-value=2.9e-17 Score=168.65 Aligned_cols=112 Identities=23% Similarity=0.268 Sum_probs=83.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+..+..+|+|.......+.... ..+.||||||+..|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG----------------YTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT----------------EEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC----------------eEEEEEECCCcCccCC
Confidence 345699999999999999999999887666667777654443333321 2489999999988764
Q ss_pred h------hhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 376 L------RSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~------~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
. ...++ ..+|++|+|+|+++. ......+..+...++|+|+|+||+|+.
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 2 22233 579999999999873 233345566777899999999999985
No 81
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=3.8e-17 Score=154.85 Aligned_cols=111 Identities=24% Similarity=0.267 Sum_probs=74.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch--
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT-- 374 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~-- 374 (657)
.+.|+|+|++|+|||||+++|.+..+..+..+|+|.......+.+. ...+.||||||+..|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~l~i~Dt~G~~~~~~~ 66 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN----------------GEKFKVVDLPGVYSLTAN 66 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET----------------TEEEEEEECCCCSCSSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC----------------CcEEEEEECCCcccCCCc
Confidence 3569999999999999999999876554444455443332223222 1248999999998875
Q ss_pred ----hhhhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 375 ----NLRSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 375 ----~~~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.+...++ ..+|++|+|+|+++. ......+..+...++|+|+|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 67 SIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred chhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 2223333 268999999999861 222334455566789999999999985
No 82
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=5.8e-17 Score=159.58 Aligned_cols=117 Identities=18% Similarity=0.123 Sum_probs=80.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+.......++.++....+.+... ...+.||||||+..|..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~l~Dt~G~~~~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE--------------KVKLQIWDTAGQERFRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE--------------EEEEEEEEECCSGGGHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHHHHH
Confidence 3456999999999999999999987765443333332222222222110 12389999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHHH---hcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++....+... ++..+. ..++|+|+|+||+|+..
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9999999999999999998743222222 222232 24689999999999963
No 83
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.69 E-value=3.2e-17 Score=158.28 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=79.7
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
...+.+.|+|+|++|+|||||+++|++..+.......++.++....+.+... ...+.||||||+..
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE--------------RIKIQLWDTAGQER 81 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTE--------------EEEEEEEECCCSHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCE--------------EEEEEEEECCCchh
Confidence 3455667999999999999999999987665433332222222222222110 12489999999999
Q ss_pred ch-hhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHH----hcCCceEEEeccccccc
Q 036359 373 FT-NLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 373 f~-~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~----~~~vPiIvvlNKiDl~~ 426 (657)
|. .++..++..+|++|||+|+++........ .+..+. ..++|+|+|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 98 77777889999999999998733222222 222222 34789999999999963
No 84
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.69 E-value=5.6e-17 Score=159.73 Aligned_cols=114 Identities=24% Similarity=0.318 Sum_probs=76.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+.... ..++. ....+.+... ....+.|||||||..|..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~--~~~~~~~~~~-------------~~~~~~i~Dt~G~~~~~~ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITD--SSAIYKVNNN-------------RGNSLTLIDLPGHESLRF 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSC--EEEEEECSST-------------TCCEEEEEECCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc-CCcce--eeEEEEecCC-------------CccEEEEEECCCChhHHH
Confidence 4567999999999999999999987654321 11221 1112222210 023589999999999987
Q ss_pred -hhhcCCCCCceeeEeecccCCCchhHHHHHHHHH---------hcCCceEEEeccccccc
Q 036359 376 -LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLK---------ERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 -~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~---------~~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++ +..+....+..+. ..++|+|+|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 67777899999999999986 2222222222211 23689999999999964
No 85
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.69 E-value=3.9e-17 Score=156.30 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=79.6
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
+.+...|+|+|++|+|||||+++|++..+.....+.++..+ ...+.+.. ....+.||||||+..|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~G~~~~ 79 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDN--------------QWAILDVLDTAGQEEF 79 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCSCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCC--------------cEEEEEEEECCCchhh
Confidence 34556699999999999999999997665433222222111 11111111 0123778999999999
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHHHH-H----HHHhcCCceEEEeccccccc
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIESL-D----LLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~----~l~~~~vPiIvvlNKiDl~~ 426 (657)
..++..++..+|++|||+|++++...+....| . .....++|+|+|+||+|+..
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 80 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp CSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 98888888999999999999984322222211 2 22335789999999999863
No 86
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.69 E-value=2.9e-17 Score=158.32 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=99.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccC------ceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAG------GITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG 369 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~------GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG 369 (657)
+...|+|+|++|+|||||++.|.+......... ....+++..+...... ........+.||||||
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---------~~~~~~~~~~i~Dt~G 83 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG---------EVKGFKTRFHLYTVPG 83 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCC---------CSSSCEEEEEEEECCS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccc---------cccCCceEEEEEeCCC
Confidence 345699999999999999987765432211100 0111222222111100 0001122489999999
Q ss_pred CCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHh---------cCCceEEEecccccccCcccCCCccHHHHH
Q 036359 370 HESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKE---------RSVDFIIALSKADKLYGWKSCKNAPIKKAL 440 (657)
Q Consensus 370 h~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~---------~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L 440 (657)
+..|..++..++..+|++|||+|++++...+..+.+..+.. .++|+|+|+||+|+... ..
T Consensus 84 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~------~~----- 152 (198)
T 3t1o_A 84 QVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA------LP----- 152 (198)
T ss_dssp CCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC------CC-----
T ss_pred hHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc------cC-----
Confidence 99999999999999999999999997665555555443322 47899999999999631 11
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 441 EQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 441 ~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+... +.++++++||+++.++.+.+..
T Consensus 153 --------------~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~ 185 (198)
T 3t1o_A 153 --------------VEMVRAVVDPE--------------GKFPVLEAVATEGKGVFETLKE 185 (198)
T ss_dssp --------------HHHHHHHHCTT--------------CCSCEEECBGGGTBTHHHHHHH
T ss_pred --------------HHHHHHHHHhc--------------CCceEEEEecCCCcCHHHHHHH
Confidence 11222222221 1238999999999998876643
No 87
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.69 E-value=5.2e-17 Score=154.26 Aligned_cols=117 Identities=18% Similarity=0.132 Sum_probs=78.3
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+.+.|+|+|++|+|||||+++|++..+.....+.+...+. ..+.+... ...+.||||||+..|.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~--------------~~~~~~~Dt~G~~~~~ 71 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGI--------------PARLDILDTAGQEEFG 71 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTE--------------EEEEEEEECCCTTTTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCE--------------EEEEEEEECCCchhhH
Confidence 34566999999999999999999987654332222111111 11111110 1238899999999998
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHH-HHHHH----HHhcCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDL----LKERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~----l~~~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|+|+|+++....... .++.. ....++|+|+|+||+|+..
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp CCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred HHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 8888888899999999999883221111 11222 2234789999999999964
No 88
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.69 E-value=5.6e-17 Score=152.43 Aligned_cols=117 Identities=23% Similarity=0.233 Sum_probs=79.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.+...+....+.+.. ....+.||||||+..|..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dt~G~~~~~~ 70 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN--------------ELHKFLIWDTAGLERFRA 70 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT--------------EEEEEEEEEECCSGGGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC--------------eEEEEEEEcCCCchhhhc
Confidence 345699999999999999999998765432211111111111111111 012489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|+|+|++++...+... ++..+.. .++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 8888889999999999998844333322 2233333 3678999999999964
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=5.7e-17 Score=156.27 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=95.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.. ...+++.....+. +....+.||||||+..|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVH-----TSPTIGSNVEEIV--------------INNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEE-----EECCSCSSCEEEE--------------ETTEEEEEEECCC----CG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-----CcCCCccceEEEE--------------ECCEEEEEEECCCCHhHHH
Confidence 45669999999999999999999766531 1112221111110 1123589999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh----cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE----RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~----~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|||+|++++...... ..+..+.. .++|+|+|+||+|+.. ..+.
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~------~~~~-------------- 135 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE------CMTV-------------- 135 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT------CCCH--------------
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC------CCCH--------------
Confidence 888888999999999999986433222 23333332 5789999999999963 1110
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+....+. ...++++++||+++.++.+.+..
T Consensus 136 -----~~i~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~ 171 (187)
T 1zj6_A 136 -----AEISQFLKLTSIK----------DHQWHIQACCALTGEGLCQGLEW 171 (187)
T ss_dssp -----HHHHHHHTGGGCC----------SSCEEEEECBTTTTBTHHHHHHH
T ss_pred -----HHHHHHhChhhhc----------CCCcEEEEccCCCCcCHHHHHHH
Confidence 1222222211011 13468999999999998776543
No 90
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=5.1e-17 Score=156.73 Aligned_cols=112 Identities=23% Similarity=0.164 Sum_probs=78.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|.+..+... ..+++.....+. +....+.||||||+..|..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~--------------~~~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT-----VPTVGVNLETLQ--------------YKNISFEVWDLGGQTGVRP 81 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE-----CSSTTCCEEEEE--------------ETTEEEEEEEECCSSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc-----CCCCceEEEEEE--------------ECCEEEEEEECCCCHhHHH
Confidence 455699999999999999999987665321 112222111111 1123589999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhH-HHHHHHHHh----cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQT-IESLDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|+|+|++++..... ...+..+.. .++|+|+|+||+|+..
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 88889999999999999998543222 223333322 3789999999999963
No 91
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=3.9e-17 Score=160.13 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=80.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+......+++.++....+.+... ...+.||||||+..|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~~~ 84 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK--------------KVKLQLWDTAGQERFRT 84 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTE--------------EEEEEEECCTTGGGGTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCE--------------EEEEEEEeCCCcHHHHH
Confidence 3456999999999999999999987765433333333322222222210 02489999999999988
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh---cCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~---~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|||+|++++...+.. .++..+.. .++|+|+|+||+|+.
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 888888999999999999874322222 22233332 378999999999984
No 92
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.69 E-value=8.5e-17 Score=160.84 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=76.8
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc--
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES-- 372 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~-- 372 (657)
.+.+.|+|+|++|+|||||+++|++..+......+.|..+....+.+. ...+.||||||+.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK----------------LNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET----------------TEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC----------------CCeEEEEECCCCcCcc
Confidence 355679999999999999999999887654333444443332222221 12489999999943
Q ss_pred --------chhhhhcCCCCCceeeEeecccCCCchh---HHHHHHHHHhc--CCceEEEeccccccc
Q 036359 373 --------FTNLRSWGPGLCDIAILVVDIMDGIKPQ---TIESLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 373 --------f~~~~~~g~~~aD~aIlVVDa~~g~~~q---t~e~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
|..+ ...+..+|++|||+|++++.... ....+..+... ++|+|+|+||+|+..
T Consensus 91 ~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 91 FENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp GGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 2222 23357789999999999865432 23445555554 899999999999974
No 93
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.69 E-value=3.1e-17 Score=158.86 Aligned_cols=117 Identities=22% Similarity=0.171 Sum_probs=78.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.......++.++....+.+.. ....+.||||||+..|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 85 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG--------------KQIKLQIWDTAGQESFRS 85 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT--------------EEEEEEEECCTTGGGTSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC--------------EEEEEEEEECCCchhhhh
Confidence 345699999999999999999998765433222222222212222211 012489999999999988
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++....+... ++..+.. .++|+|+|+||+|+..
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 8888889999999999998843222222 2233333 3789999999999963
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.69 E-value=4.5e-17 Score=156.45 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=98.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++.... . ...+++.....+. +....+.||||||+..|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~----~~~t~~~~~~~~~--------------~~~~~~~~~Dt~G~~~~~~ 77 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVD-T----ISPTLGFNIKTLE--------------HRGFKLNIWDVGGQKSLRS 77 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCS-S----CCCCSSEEEEEEE--------------ETTEEEEEEEECCSHHHHT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC-c----ccccCccceEEEE--------------ECCEEEEEEECCCCHhHHH
Confidence 4456999999999999999999986621 1 1112222211111 1123489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhH-HHHHHHHHh----cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQT-IESLDLLKE----RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l~~----~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|+|+|++++..... ...+..+.. .++|+|+|+||+|+.. ..+.
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------~~~~-------------- 137 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG------ALSC-------------- 137 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT------CCCH--------------
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC------CCCH--------------
Confidence 88889999999999999988433222 223333322 4789999999999963 1111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+. +.. .....++++++||+++.++.+.+..
T Consensus 138 -----~~~~~~~~---~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~ 173 (186)
T 1ksh_A 138 -----NAIQEALE---LDS-------IRSHHWRIQGCSAVTGEDLLPGIDW 173 (186)
T ss_dssp -----HHHHHHTT---GGG-------CCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred -----HHHHHHhC---hhh-------ccCCceEEEEeeCCCCCCHHHHHHH
Confidence 11211111 100 0013578999999999988776543
No 95
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.68 E-value=6.8e-17 Score=151.07 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=73.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.....+.+.... ...+.+.. ....+.||||||+..|..+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~D~~G~~~~~~~ 68 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG--------------EEVQIDILDTAGQEDYAAI 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCC---CHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECC--------------EEEEEEEEECCCcchhHHH
Confidence 34599999999999999999998765432222111111 01111110 0124899999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHH----hcCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~----~~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|+|+|+++........ ++..+. ..++|+|+|+||+|+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 888889999999999999732222221 122222 23789999999999964
No 96
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=4.9e-17 Score=156.78 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=79.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++++|||||+++|++..+.....+.++.++....+.+.. ....+.||||||+..|..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 79 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG--------------NKAKLAIWDTAGQERFRT 79 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT--------------EEEEEEEEEECSSGGGCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECC--------------eEEEEEEEeCCCchhhhh
Confidence 445699999999999999999998765533222222222111222211 012489999999999988
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh----cCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~----~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|||+|++++....... ++..+.. .++|+|+|+||+|+.
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 8888889999999999998843322222 2233333 368999999999994
No 97
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=159.11 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.......++.++....+.+... ...+.||||||+..|..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~ 93 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGK--------------RVKLQIWDTAGQERFRT 93 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTE--------------EEEEEEECCTTCGGGHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCE--------------EEEEEEEECCCcHhHHH
Confidence 3456999999999999999999987664332222221121122222110 12489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh---cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++....+.. .++..+.. .++|+|+|+||+|+..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 888899999999999999873222222 22233332 4689999999999963
No 98
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.68 E-value=5.2e-17 Score=158.90 Aligned_cols=116 Identities=22% Similarity=0.171 Sum_probs=79.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
....|+|+|++|+|||||+++|.+..+.....+.++..+. ..+.+.. ....+.||||||+..|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~ 88 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDG--------------KQVELALWDTAGQEDYDR 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETT--------------EEEEEEEECCCCSGGGTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECC--------------EEEEEEEEECCCchhHHH
Confidence 3456999999999999999999987664332222222111 1111111 012489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH--HHHHHHHhc--CCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI--ESLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~--e~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++....+.. .++..+... ++|+|+|+||+|+..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 988899999999999999873222222 222334433 899999999999964
No 99
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=154.40 Aligned_cols=117 Identities=24% Similarity=0.158 Sum_probs=78.7
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+.+.|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+. .....+.||||||+..|.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~~~l~Dt~G~~~~~ 86 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLG--------------KDEFHLHLVDTAGQDEYS 86 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC------------------CEEEEEEEECCCCTTC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC--------------CEEEEEEEEECCCccchH
Confidence 4556699999999999999999998776533222211111 1111111 011247999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHH-HHHHHh----cCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|+++....+.... +..+.. .++|+|+|+||+|+..
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 998899999999999999997322222222 222222 3789999999999864
No 100
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.68 E-value=8.3e-17 Score=155.03 Aligned_cols=152 Identities=24% Similarity=0.246 Sum_probs=99.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|.+..+.. ++.++|.....+. ++...+.||||||+..|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-----~~~t~g~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~ 75 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISH-----ITPTQGFNIKSVQ--------------SQGFKLNVWDIGGQRKIRP 75 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEE-----EEEETTEEEEEEE--------------ETTEEEEEEECSSCGGGHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCc-----ccCcCCeEEEEEE--------------ECCEEEEEEECCCCHHHHH
Confidence 44669999999999999999999875421 2333443221111 1123489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHHHHH-H---hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLL-K---ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l-~---~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|+|+|+++....... ..+..+ . ..++|+|+|+||+|+.. ....
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~------~~~~-------------- 135 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT------AAPA-------------- 135 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT------CCCH--------------
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc------CCCH--------------
Confidence 888888999999999999874322222 223222 2 24789999999999963 1110
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+ ++.. .....++++++||++|.++.+.+.+
T Consensus 136 -----~~~~~~~---~~~~-------~~~~~~~~~~~Sa~~g~gi~~l~~~ 171 (181)
T 1fzq_A 136 -----SEIAEGL---NLHT-------IRDRVWQIQSCSALTGEGVQDGMNW 171 (181)
T ss_dssp -----HHHHHHT---TGGG-------CCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred -----HHHHHHh---Cchh-------ccCCceEEEEccCCCCCCHHHHHHH
Confidence 1111111 2110 0013468999999999999887654
No 101
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=150.44 Aligned_cols=114 Identities=22% Similarity=0.113 Sum_probs=68.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccccc-ccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc--c
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEG-EAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES--F 373 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~-~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~--f 373 (657)
.+.|+|+|++|+|||||+++|.+..+... ...|.+... ..+.+.. ....+.||||||+.. |
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE--RTLTVDG--------------EDTTLVVVDTWEAEKLDK 67 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEE--EEEEETT--------------EEEEEEEECCC-------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeE--EEEEECC--------------EEEEEEEEecCCCCccch
Confidence 35699999999999999999998765421 122222111 1111111 012388999999988 5
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHhc----CCceEEEeccccccc
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKER----SVDFIIALSKADKLY 426 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~~----~vPiIvvlNKiDl~~ 426 (657)
..+...++..+|++|+|+|+++........ ++..+... ++|+|+|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 566667788899999999998732222222 22334332 789999999999964
No 102
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.68 E-value=9.9e-17 Score=153.11 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
++...|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..|.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~Dt~G~~~~~ 80 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG--------------EEVQIDILDTAGQEDYA 80 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCCTTCCH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECC--------------EEEEEEEEECCCCcccH
Confidence 4456699999999999999999997765432211111111 01111110 01248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHH----hcCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~----~~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|+|+|+++....+... ++..+. ..++|+|+|+||+|+..
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 88888889999999999998732222221 112222 23789999999999964
No 103
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.68 E-value=4.6e-17 Score=159.38 Aligned_cols=116 Identities=20% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+......+++..+....+.+... ...+.||||||+..|..+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~l~Dt~G~~~~~~~ 90 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK--------------TVKLQIWDTAGQERFRSV 90 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTE--------------EEEEEEECCTTHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCe--------------eeEEEEEcCCCcHhHHHH
Confidence 455999999999999999999987765433333332222222222110 124899999999999888
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHH---hcCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++...+... ++..+. ..++|+|+|+||+|+..
T Consensus 91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 888889999999999998843322222 222222 24789999999999963
No 104
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.68 E-value=4.4e-17 Score=157.58 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=99.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+..... ..++..+..+. .....+.||||||+..|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~ 82 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMI----PTVGFNMRKIT--------------KGNVTIKLWDIGGQPRFRS 82 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----CCCSEEEEEEE--------------ETTEEEEEEEECCSHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccC----CCCceeEEEEE--------------eCCEEEEEEECCCCHhHHH
Confidence 34569999999999999999999876653221 12222222211 1123489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhH-HHHHHHH-H---hcCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQT-IESLDLL-K---ERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l-~---~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|||+|+++....+. ...+..+ . ..++|+|+|+||+|+... .+.
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------~~~-------------- 142 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA------LDE-------------- 142 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC------CCH--------------
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC------CCH--------------
Confidence 88888899999999999987432222 2233322 2 257899999999999631 110
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+...+ ++.. . ....++++++||+++.++.+.+.+
T Consensus 143 -----~~~~~~~---~~~~---~----~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 143 -----KELIEKM---NLSA---I----QDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp -----HHHHHHT---TGGG---C----CSSCEEEEECCTTTCTTHHHHHHH
T ss_pred -----HHHHHHh---Chhh---h----ccCCeeEEEEECCCCCCHHHHHHH
Confidence 1111111 1110 0 013578999999999998886654
No 105
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.67 E-value=6.5e-17 Score=158.92 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=78.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|++..+.....+. +.......+.+.. ....+.||||||+..|.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t-~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~ 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-VFDNYSANVMVDG--------------KPVNLGLWDTAGLEDYD 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCC-SEEEEEEEEECC---------------CEEEEEEEEECCSGGGT
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCe-ecceeEEEEEECC--------------EEEEEEEEECCCchhhH
Confidence 34566999999999999999999976654322221 1111111111111 11236799999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHH--HHHHHHHhc--CCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTI--ESLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~--e~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|++++...+.. .++..+... ++|+|+|+||+|+..
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 9998899999999999999984333322 123344443 899999999999964
No 106
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.67 E-value=3.2e-17 Score=161.80 Aligned_cols=124 Identities=18% Similarity=0.091 Sum_probs=79.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++++|||||+++|++..+.......++.++....+.+...... ..........+.||||||+..|..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPN----GSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEESHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCcccc----ccccCceeEEEEEEECCCcHhHHh
Confidence 3456999999999999999999987764322222222221112222110000 000000023489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHHHH----HHh----cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESLDL----LKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~----l~~----~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++ +.+...+.. +.. .++|+|||+||+|+..
T Consensus 100 ~~~~~~~~~d~iilV~D~~~---~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTS---QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTC---HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred HHHHHhcCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 88888999999999999988 334333321 221 4689999999999964
No 107
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=155.99 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=78.3
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+.+.|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..|.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~Dt~G~~~~~ 76 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG--------------EEVQIDILDTAGQEDYA 76 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCCTTCCH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECC--------------EEEEEEEEcCCChhhhH
Confidence 4556799999999999999999997765432211111111 11111111 01248899999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHH----hcCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~----~~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|+++........ ++..+. ..++|+|+|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 88888889999999999998732222222 222222 23789999999999964
No 108
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-16 Score=159.46 Aligned_cols=116 Identities=19% Similarity=0.161 Sum_probs=76.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
.+.|+|+|++++|||||+++|++..+.......++..+....+.+... ...+.||||||+..|..+
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~ 78 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK--------------RIKAQIWDTAGQERYRAI 78 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTE--------------EEEEEEECCTTTTTTTCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE--------------EEEEEEEECCCccchhhh
Confidence 355999999999999999999987765332222222222122222110 124899999999999998
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHH-HHHHHh---cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++...+.... +..+.. .++|+|||+||+|+..
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8889999999999999988433222222 233333 3789999999999963
No 109
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=6.4e-17 Score=157.87 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=75.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|++..+.......++..+....+.+.. ....+.||||||+..|.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~ 91 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG--------------ERTVLQLWDTAGQERFR 91 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETT--------------EEEEEEEEECTTCTTCH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECC--------------EEEEEEEEECCCCcchh
Confidence 3456699999999999999999997765422111111111111111111 01238999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHH-HHHHHh---cCCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~~---~~vPiIvvlNKiDl~ 425 (657)
.++..++..+|++|||+|++++...+.... +..+.. .++|+|+|+||+|+.
T Consensus 92 ~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 92 SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 888888899999999999988443333322 223332 378999999999996
No 110
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.67 E-value=5.2e-17 Score=178.03 Aligned_cols=113 Identities=25% Similarity=0.351 Sum_probs=83.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
.+.|+|+|++|+|||||+++|++..+. .....|+|.......+.+... ..++|||||||.+|..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~---------------~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI---------------GPVTLVDTPGLDDVGE 98 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT---------------EEEEEEECSSTTCCCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC---------------CeEEEEECcCCCcccc
Confidence 345999999999999999999998763 445567776655554444321 1489999999998865
Q ss_pred h-------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 376 L-------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~-------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+ +..++..+|++|||||+ +...++..++..+...++|+|+|+||+|+..
T Consensus 99 l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 99 LGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLG 154 (423)
T ss_dssp TCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTT
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCC
Confidence 4 23467789999999999 7888999999999999999999999999974
No 111
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=9.3e-17 Score=157.85 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=77.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
++.+.|+|+|++|+|||||+++|++..+.....+.++..+. ..+.+.. ....+.||||||+..|.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDG--------------KQVELALWDTAGQEDYD 87 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETT--------------EEEEEEEEECTTCTTCT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECC--------------EEEEEEEEECCCcHHHH
Confidence 34556999999999999999999987654322111111110 0011110 01248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHH--HHHHHHHhc--CCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTI--ESLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~--e~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|+++....+.. .++..+... ++|+|+|+||+|+..
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 8888899999999999999873222222 223334433 899999999999964
No 112
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.4e-16 Score=149.82 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=76.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||+++|++..+...... .++..+...... ......+.||||||+..|..++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~-----------~~~~~~~~~~Dt~G~~~~~~~~ 68 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP----TVEDTYRQVISC-----------DKSICTLQITDTTGSHQFPAMQ 68 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC----CSCEEEEEEEEE-----------TTEEEEEEEEECCSCSSCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----CccccEEEEEEE-----------CCEEEEEEEEECCCchhhHHHH
Confidence 4599999999999999999998765432211 122111110000 0011248999999999999888
Q ss_pred hcCCCCCceeeEeecccCCCchh-HHHHHHHHHh-----cCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQ-TIESLDLLKE-----RSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~q-t~e~l~~l~~-----~~vPiIvvlNKiDl~~ 426 (657)
..++..+|++|+|+|+++..... ....+..+.. .++|+|+|+||+|+..
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 88888999999999998732221 1223333333 3689999999999964
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=3.3e-17 Score=157.49 Aligned_cols=114 Identities=24% Similarity=0.277 Sum_probs=79.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
++.+.|+|+|++|+|||||+++|++..+......|+|.+.....+.+. ...+.||||||+..|.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN----------------GEKFKVVDLPGVYSLT 68 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET----------------TEEEEEEECCCCSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC----------------CcEEEEEECCCcCccc
Confidence 455679999999999999999999876544444555543332223222 1348999999998874
Q ss_pred ------hhhhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 375 ------NLRSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ------~~~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.++..++ ..+|++++|+|++. ......++..+...++|+|+|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 69 ANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred cccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 2233333 24899999999886 22333455566677899999999999863
No 114
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.67 E-value=8.5e-17 Score=156.68 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC--cccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT--NVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~--~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
+...|+|+|++|+|||||+++|++. .+.....+.+..++....+.+.... ....+.||||||+..|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~------------~~~~~~l~Dt~G~~~~ 86 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT------------VSVELFLLDTAGSDLY 86 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSS------------EEEEEEEEETTTTHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc------------cEEEEEEEECCCcHHH
Confidence 3456999999999999999999987 4432221211111222222222100 0124899999999999
Q ss_pred hhhhhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh------cCCceEEEecccccc
Q 036359 374 TNLRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE------RSVDFIIALSKADKL 425 (657)
Q Consensus 374 ~~~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~------~~vPiIvvlNKiDl~ 425 (657)
..++..++..+|++|||+|++++...... .++..+.. .++|+|+|+||+|+.
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 99999999999999999999884322222 22233332 478999999999996
No 115
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.67 E-value=1.3e-16 Score=152.15 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=73.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|++..+.....+.+...+. ..+.+. -....+.||||||+..|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--------------~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVN--------------GATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC---------------------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEEC--------------CEEEEEEEEECCCChhhh
Confidence 34567999999999999999999976654321111110000 000000 011247799999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHH--HHHHHHh--cCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIE--SLDLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|+++....+... ++..+.. .++|+|+|+||+|+..
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 99888999999999999998733222221 2223333 2789999999999963
No 116
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.67 E-value=1.1e-16 Score=165.81 Aligned_cols=110 Identities=25% Similarity=0.258 Sum_probs=79.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch---
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT--- 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~--- 374 (657)
+.|+|+|++|+|||||+++|++.....+..+|+|.......+.. ...+.||||||+..|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-----------------~~~l~l~DtpG~~~~~~~~ 66 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-----------------NKDLEIQDLPGIYSMSPYS 66 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-----------------CTTEEEEECCCCSCSSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-----------------CCeEEEEECCCcCccCCCC
Confidence 45999999999999999999998755566666665432222221 2359999999998875
Q ss_pred ---hhhhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 375 ---NLRSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ---~~~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.++..++ ..+|++|+|+|+++. ......+..+...++|+|+|+||+|+..
T Consensus 67 ~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 67 PEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred hHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 2233333 369999999999872 2233344556668999999999999863
No 117
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.67 E-value=6.9e-17 Score=157.24 Aligned_cols=153 Identities=21% Similarity=0.225 Sum_probs=94.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|++..+.. ...+++.....+. +....+.||||||+..|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-----~~~t~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVE--------------YKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-----EEEETTEEEEEEE--------------ETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-----cCCcCceeEEEEE--------------ECCEEEEEEECCCCHhHH
Confidence 355679999999999999999998776542 1222332211111 112348999999999998
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh----cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE----RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVED 449 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~----~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~ 449 (657)
.++..++..+|++|||+|++++...... ..+..+.. .++|+|+|+||+|+.. ..+
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~------~~~-------------- 147 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN------AMP-------------- 147 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT------CCC--------------
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC------CCC--------------
Confidence 8888888999999999999884322222 22222222 3789999999999963 111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 450 EFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 450 ~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+ ++.. . ....++++++||+++.++.+.+..
T Consensus 148 -----~~~i~~~~---~~~~---~----~~~~~~~~~~SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 148 -----VSELTDKL---GLQH---L----RSRTWYVQATCATQGTGLYDGLDW 184 (192)
T ss_dssp -----HHHHHHHT---TGGG---C----SSCCEEEEECBTTTTBTHHHHHHH
T ss_pred -----HHHHHHHh---Cccc---c----cCCceEEEECcCCCcCCHHHHHHH
Confidence 01122111 2110 0 013478999999999998876643
No 118
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=8.3e-17 Score=178.27 Aligned_cols=157 Identities=20% Similarity=0.322 Sum_probs=109.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc-ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC-----
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN-VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG----- 369 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG----- 369 (657)
..+.|+|+|++|+|||||+++|++.. ...+...|+|.+.....+.+.. ..++||||||
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~----------------~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ----------------QEFVIVDTAGMRKKG 257 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT----------------EEEEETTGGGTTTBT
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC----------------ceEEEEECCCCCcCc
Confidence 45669999999999999999999765 3345556677665544444332 2489999999
Q ss_pred -----CCcchhhhh-cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhh
Q 036359 370 -----HESFTNLRS-WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQ 443 (657)
Q Consensus 370 -----h~~f~~~~~-~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q 443 (657)
++.|..++. .++..+|++|||+|+++++..++..++.++...++|+|+|+||+|+... ....
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~----~~~~-------- 325 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK----DEST-------- 325 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC----CSSH--------
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC----chHH--------
Confidence 566665544 4678899999999999999999999999999999999999999999741 0111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 444 SKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 444 ~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+... +. +...++++++||++|.++.+.+..
T Consensus 326 -----------~~~~~~~~~~~-~~---------~~~~~~~~~~SA~~g~gv~~l~~~ 362 (456)
T 4dcu_A 326 -----------MKEFEENIRDH-FQ---------FLDYAPILFMSALTKKRIHTLMPA 362 (456)
T ss_dssp -----------HHHHHHHHHHH-CG---------GGTTSCEEECCTTTCTTGGGHHHH
T ss_pred -----------HHHHHHHHHHh-cc---------cCCCCCEEEEcCCCCcCHHHHHHH
Confidence 11122222211 00 013478999999999998876654
No 119
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=4.8e-17 Score=158.78 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=77.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+......+++.++....+.+... ...+.||||||+..|..+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~ 98 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK--------------TIKLQIWDTAGQERFRTI 98 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTE--------------EEEEEEECCTTCTTCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCE--------------EEEEEEEECCCcHhHHHH
Confidence 455999999999999999999987665433333333222222222210 124899999999999998
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHHhc---CCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKER---SVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~~---~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|+++....+... ++..+... ++|+|+|+||+|+..
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 888999999999999999844333322 22333332 789999999999963
No 120
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.66 E-value=3.5e-16 Score=146.81 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=59.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccccc-ccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEG-EAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~-~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
..|+|+|++|+|||||+++|.+..+... ...|.+.. ..+.+.. ....+.||||||+..|..+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~--------------~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDG--------------EEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETT--------------EEEEEEEEECC--------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECC--------------EEEEEEEEECCCCccchhh
Confidence 4599999999999999999987654311 11222211 0111110 1124889999999999988
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHH----HHHHh----cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|+|+|+++ +.+++.+ ..+.. .++|+|+|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTD---KGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp -------CCEEEEEEETTC---HHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred hhhhhhhCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 8889999999999999997 3333322 22322 3789999999999964
No 121
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.66 E-value=2.4e-16 Score=152.76 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=78.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.+...+.. .+.+.. ....+.||||||+..|..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 86 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKN--------------EEFILHLWDTAGQEEYDR 86 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETT--------------EEEEEEEEEECCSGGGTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECC--------------EEEEEEEEECCCcHHHHH
Confidence 44569999999999999999999877643322222111110 111110 012379999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHH-----HHHHhc--CCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESL-----DLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++. .++..+ ..+... ++|+|+|+||+|+..
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNR---TSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred HhHhhccCCcEEEEEEECCCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 999999999999999999983 433332 233333 689999999999964
No 122
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.66 E-value=3e-16 Score=153.64 Aligned_cols=112 Identities=21% Similarity=0.161 Sum_probs=72.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|.+..+.... .|.......+.+ ....+.||||||+..|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~---~t~~~~~~~~~~----------------~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELTI----------------AGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEE----------------TTEEEEEEEECC----C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC---CCCCceeEEEEE----------------CCEEEEEEECCCcHhhH
Confidence 45567999999999999999999987653210 111111111221 11348999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhH-HHHHHHHH----hcCCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQT-IESLDLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt-~e~l~~l~----~~~vPiIvvlNKiDl~ 425 (657)
.++..++..+|++|+|+|++++...+. ...+..+. ..++|+|+|+||+|+.
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 888888999999999999988432222 22222222 2478999999999996
No 123
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.66 E-value=2.3e-16 Score=152.07 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=69.2
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
..++...|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEE 81 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCC---
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECC--------------EEEEEEEEECCChHH
Confidence 346667799999999999999999997665432211111111 01111110 012388999999999
Q ss_pred chhhhhcCCCCCceeeEeecccCCCchhHHHH-HHHHHh----cCCceEEEeccccccc
Q 036359 373 FTNLRSWGPGLCDIAILVVDIMDGIKPQTIES-LDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 373 f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~-l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
|..++..++..+|++|+|+|+++......... +..+.. .++|+|+|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 99988889999999999999988433222222 222222 3789999999999863
No 124
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.66 E-value=2.6e-16 Score=157.47 Aligned_cols=152 Identities=20% Similarity=0.166 Sum_probs=97.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
+|...|+|+|..++|||||+++|+...+.....+.+..++....+.... ....+.||||+|++.|.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~--------------~~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED--------------RTIRLQLWDTAGLERFR 76 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSS--------------CEEEEEEECCSCTTTCG
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecc--------------eEEEEEEEECCCchhhh
Confidence 4556799999999999999999998776544322222111111111111 11248899999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH----HHH---HhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHH
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL----DLL---KERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDV 447 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l---~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~ 447 (657)
.++..++..+|++|||+|.++ ..+++.+ ..+ ...++|+|+|+||+|+... +..+.
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~---~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~----r~V~~----------- 138 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITN---VNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK----RQVSI----------- 138 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTC---HHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG----CCSCH-----------
T ss_pred hHHHHHhccccEEEEEeecch---hHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc----CcccH-----------
Confidence 999999999999999999998 4444433 222 2346899999999998641 11111
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 448 EDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 448 ~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
.+........ .++++.+||++|.++.+.+..
T Consensus 139 --------~e~~~~a~~~---------------~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 139 --------EEGERKAKEL---------------NVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp --------HHHHHHHHHH---------------TCEEEEEBTTTTBSHHHHHHH
T ss_pred --------HHHhhHHHHh---------------CCeeEEEeCCCCcCHHHHHHH
Confidence 1111111121 257899999999999886654
No 125
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=2e-16 Score=174.39 Aligned_cols=112 Identities=22% Similarity=0.257 Sum_probs=80.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc---
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF--- 373 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f--- 373 (657)
|.|+|+|.+|+|||||+|+|++.... .....|+|.+.....+.+.. ..+.||||||+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~----------------~~~~l~DT~G~~~~~~~ 65 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG----------------KTFKLVDTCGVFDNPQD 65 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT----------------EEEEEEECTTTTSSGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC----------------eEEEEEECCCccccccc
Confidence 57999999999999999999987743 34567777766555555432 23899999997652
Q ss_pred ------hhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 374 ------TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 374 ------~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
...+..++..+|++|+|||+..++.........+++..++|+|+|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 66 IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 2334556789999999999999988777666677777899999999999984
No 126
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.66 E-value=2.2e-16 Score=153.42 Aligned_cols=111 Identities=22% Similarity=0.149 Sum_probs=76.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|.+..+... ...++.....+ .+....+.||||||+..|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~--------------~~~~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEEL--------------AIGNIKFTTFDLGGHIQARR 82 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEE--------------EETTEEEEEEECCCSGGGTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 455799999999999999999997665321 11122211111 01123489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHHHHHH----hcCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~----~~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|||+|++++...+.. ..+..+. ..++|+|+|+||+|+.
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 888889999999999999985332222 2222222 2578999999999996
No 127
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.66 E-value=8e-17 Score=159.10 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=78.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
....|+|+|++|+|||||+++|++..+... ....++..+........ ......+.||||||+..|..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~ 76 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKN----YNATVGAVNHPVTFLDD---------QGNVIKFNVWDTAGQEKKAV 76 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCE----EETTTTEEEEEEEEEBT---------TSCEEEEEEEEECSGGGTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccceeeEEEEEEeC---------CCcEEEEEEEecCCchhhch
Confidence 445699999999999999999998765422 11122222211110000 00002489999999999988
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHH-HHH---HhcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLL---KERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l---~~~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|++++...+....| ..+ ...++|+|+|+||+|+..
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 888888999999999999985443433222 222 234789999999999863
No 128
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.66 E-value=2.2e-16 Score=147.00 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.....+.+...+ ...+.... ....+.||||||+..|..+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~D~~G~~~~~~~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEEYSAM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETT--------------EEEEEEEEECCCCSSCCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECC--------------EEEEEEEEECCCchhhhHH
Confidence 34599999999999999999997765432222111110 01111110 0123789999999999888
Q ss_pred hhcCCCCCceeeEeecccCCCchhHH-HHHHHHHh----cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 88888899999999999873222221 22222222 2799999999999863
No 129
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=3.2e-16 Score=151.77 Aligned_cols=115 Identities=23% Similarity=0.275 Sum_probs=78.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..|..+
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~D~~G~~~~~~~ 82 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGG--------------KQYLLGLYDTAGQEDYDRL 82 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSS--------------CEEEEEEECCCCSSSSTTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECC--------------EEEEEEEEECCCCcchhHH
Confidence 35699999999999999999998765432221111110 00111110 0124889999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCchhHH--HHHHHHHhc--CCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTI--ESLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~--e~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|++++...+.. .++..+... ++|+|+|+||+|+..
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 83 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 98899999999999999884322222 223344444 899999999999964
No 130
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.65 E-value=1.8e-16 Score=149.19 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=64.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh-hh
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN-LR 377 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~-~~ 377 (657)
.|+|+|++|+|||||+++|++...........+.+.....+.+.. ....+.||||||+..|.. ++
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~D~~g~~~~~~~~~ 69 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDK--------------EEVTLIVYDIWEQGDAGGWLQ 69 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETT--------------EEEEEEEECCCCC--------
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECC--------------eEEEEEEEECCCccccchhhh
Confidence 499999999999999999987654322211112111111111111 012488999999998875 55
Q ss_pred hcCCCCCceeeEeecccCCCchhHH-HHHHHHHh----cCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
..++..+|++|+|+|+++....... ..+..+.. .++|+|+|+||+|+..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 5556779999999999883221111 12222222 2789999999999863
No 131
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.65 E-value=1.8e-16 Score=151.82 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.....+. +.......+.+.. ....+.||||||+..|..+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~ 68 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVIDG--------------ETCLLDILDTAGQEEYSAM 68 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTT-CCEEEEEEEEETT--------------EEEEEEEEECCCC---CTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-chheEEEEEEECC--------------cEEEEEEEECCCcHHHHHH
Confidence 345999999999999999999977654322221 1111111111111 0123789999999999998
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHH-HHHH----hcCCceEEEecccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~----~~~vPiIvvlNKiDl~ 425 (657)
+..++..+|++|+|+|+++.........| ..+. ..++|+|+|+||+|+.
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 69 RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 88888999999999999883322222222 2222 2478999999999996
No 132
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=151.11 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..|.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~ 82 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDG--------------RPVRLQLCDTAGQDEFD 82 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETT--------------EEEEEEEEECCCSTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECC--------------EEEEEEEEECCCCHHHH
Confidence 3456699999999999999999998765432211111000 00111110 01237899999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHH--HHHHHHh--cCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIE--SLDLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|+++........ ++..+.. .++|+|+|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 83 KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 88888899999999999998833222221 2222333 2799999999999964
No 133
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=5.3e-17 Score=157.23 Aligned_cols=116 Identities=17% Similarity=0.089 Sum_probs=77.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|++..+.......++.++....+... .....+.||||||+..|..+
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~ 88 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH--------------EKRVKLQIWDTAGQERYRTI 88 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET--------------TTTEEEEEECHHHHHHCHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC--------------CEEEEEEEEeCCChHHHHHH
Confidence 4559999999999999999999766543211111111111111111 11124899999999999999
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
+..++..+|++|||+|+++........ ++..+.. .++|+|+|+||+|+..
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 888999999999999998732222222 2233333 4789999999999863
No 134
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=156.51 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=61.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..|.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~l~Dt~G~~~~~ 96 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKG--------------KPVHLHIWDTAGQDDYD 96 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETT--------------EEEEEEEEEC-------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECC--------------EEEEEEEEECCCchhhh
Confidence 4556799999999999999999998765432222111110 00111110 01248999999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH-----HHHHh--cCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL-----DLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|+++ +.++..+ ..+.. .++|+|+|+||+|+..
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTS---PNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp --------CEEEEEEEEETTC---HHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred HHHHHHhccCCEEEEEEECcC---HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 888889999999999999987 4443332 22322 3789999999999964
No 135
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.65 E-value=2.3e-16 Score=155.08 Aligned_cols=113 Identities=19% Similarity=0.295 Sum_probs=76.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeecccee---eecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATY---FPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~---~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
+...|+|+|++|+|||||+++|.+..+.....+ .++..+ +.+.. ....+.||||||+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~----t~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVAVDG--------------QIVNLGLWDTAGQED 69 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC----SSCCCEEEEEECSS--------------CEEEEEEECCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCC----ccceeEEEEEEECC--------------EEEEEEEEECCCcHH
Confidence 445699999999999999999997765432211 112111 11110 112489999999999
Q ss_pred chhhhhcCCCCCceeeEeecccCCCchhHH--HHHHHHHhc--CCceEEEeccccccc
Q 036359 373 FTNLRSWGPGLCDIAILVVDIMDGIKPQTI--ESLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 373 f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~--e~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
|..++..++..+|++|||+|+++....... .++..+... ++|+|+|+||+|+..
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 998888899999999999999883222222 122333333 799999999999964
No 136
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.65 E-value=2.9e-16 Score=160.28 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=80.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccc-ccccC-ceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAG-GITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~-GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
.+.+.|+|+|++|+|||||+++|++..+. ..... ++|.......+.+. ...++|||||||.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG----------------NREIVIIDTPDMFS 83 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET----------------TEEEEEEECCGGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC----------------CCEEEEEECcCCCC
Confidence 34566999999999999999999987632 22222 24444333333332 23489999999987
Q ss_pred chhh-----------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc-----CCceEEEec-ccccc
Q 036359 373 FTNL-----------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER-----SVDFIIALS-KADKL 425 (657)
Q Consensus 373 f~~~-----------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~-----~vPiIvvlN-KiDl~ 425 (657)
|... ...++..+|++|||+|++. +..+....+..+... +.|+|+|+| |+|+.
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 6422 2236788999999999985 777777777766655 678777777 99996
No 137
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.65 E-value=1.1e-16 Score=158.91 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=79.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccccc--ccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEG--EAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~--~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
.+...|+|+|++|+|||||+++|+...+... ...|++.......+.. ....+.||||||+..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR----------------GPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT----------------EEEEEEEEEECSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC----------------EEEEEEEEeCCChHH
Confidence 4556799999999999999999776554321 1222222211111111 112489999999999
Q ss_pred chhhhhcCCCCCceeeEeecccCCCchhHHHHH-HHHHh--cCCceEEEeccccccc
Q 036359 373 FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 373 f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
|..++..++..+|++|||+|++++...+....| ..+.. .++|+|+|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 998888888999999999999984433333322 22222 2789999999999964
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=169.48 Aligned_cols=152 Identities=22% Similarity=0.205 Sum_probs=96.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+... ..+++..+..+. .....++||||||+..|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE--------------YKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEE--------------ETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEe--------------cCcEEEEEEECCCCHhHHH
Confidence 445699999999999999999998775422 112222222211 1123489999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHH-HHHHh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESL-DLLKE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l-~~l~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|||||+++....... ..+ .++.. .++|+|||+||+|+.. ..+
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~------~~~--------------- 283 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN------AMN--------------- 283 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT------CCC---------------
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc------ccC---------------
Confidence 988899999999999999874332222 222 23333 2789999999999963 111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
...+...+....+. ...++++++||+++.++.+.+..
T Consensus 284 ----~~~i~~~~~~~~~~----------~~~~~~~~vSAk~g~gi~el~~~ 320 (329)
T 3o47_A 284 ----AAEITDKLGLHSLR----------HRNWYIQATCATSGDGLYEGLDW 320 (329)
T ss_dssp ----HHHHHHHHTCTTCC----------SSCEEEEECBTTTTBTHHHHHHH
T ss_pred ----HHHHHHHhchhhhh----------cCCCEEEEEECCCCcCHHHHHHH
Confidence 11222222211111 24579999999999998886654
No 139
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=2.7e-16 Score=152.27 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
..+.|+|+|++|+|||||+++|++..+...... .++..+...... ......+.||||||+..|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~-----------~~~~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP----TIEDTYRQVISC-----------DKSVCTLQITDTTGSHQFPA 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC----CCCEEEEEEEEE-----------TTEEEEEEEEECCGGGSCHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC----ccccceeEEEEE-----------CCEEEEEEEEeCCChHHhHH
Confidence 445699999999999999999998765432211 122111110000 00112489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh-----cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE-----RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~-----~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++........ ++..+.. .++|+|+|+||+|+..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 8888888999999999998732222111 2222222 3789999999999963
No 140
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.64 E-value=7.8e-16 Score=152.59 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=79.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|..|+|||||+++|++..+.....+.+...+. ..+.+.. ....+.||||||+..|.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEE--------------QRVELSLWDTSGSPYYD 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC----------------CEEEEEEEEECCSGGGT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECC--------------EEEEEEEEECCCCHhHH
Confidence 45566999999999999999999987765332222211110 0111110 11248899999999999
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhH-HH-HHHHHHhc--CCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQT-IE-SLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt-~e-~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|||+|+++...... .. ++..+... ++|+|+|+||+|+..
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 999999999999999999998433222 12 22334433 789999999999963
No 141
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.64 E-value=3.4e-16 Score=149.79 Aligned_cols=112 Identities=19% Similarity=0.192 Sum_probs=76.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
..|+|+|++|+|||||+++|.+..+. .....|+|.++....+.+. ...+.||||||+..+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~l~Dt~G~~~~~~~ 68 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID----------------GMPLHIIDTAGLREASDE 68 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET----------------TEEEEEEECCCCSCCSSH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC----------------CeEEEEEECCCcccchhH
Confidence 45999999999999999999986542 2333444443322222222 123889999998764211
Q ss_pred --------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHh---cCCceEEEecccccc
Q 036359 377 --------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKE---RSVDFIIALSKADKL 425 (657)
Q Consensus 377 --------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~---~~vPiIvvlNKiDl~ 425 (657)
....+..+|++|+|+|++++........+..+.. .++|+|+|+||+|+.
T Consensus 69 ~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 69 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1134678999999999998765554444444443 268999999999985
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.64 E-value=5.5e-17 Score=178.71 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=79.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC----
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE---- 371 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~---- 371 (657)
.|.|+|+|++|+|||||+|+|++..+. .....|+|.+.....+.+. ...+.||||||+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~----------------~~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL----------------NYDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC----------------SSCCEEEC---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC----------------CceEEEEECCCCCCcch
Confidence 367999999999999999999987653 3345566655443333332 2358999999986
Q ss_pred ----cchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 372 ----SFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 372 ----~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.|...+..++..+|++|+|||+.+|+.......+.+++..++|+|+|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 4555566677889999999999999998888777888888999999999999863
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.63 E-value=1.1e-15 Score=146.94 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=78.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.+..... ..+.+. .....+.||||||+..|..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--------------~~~~~~~i~Dt~G~~~~~~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEID--------------TQRIELSLWDTSGSPYYDN 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECS--------------SCEEEEEEEEECCSGGGTT
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEEC--------------CEEEEEEEEECCCChhhhh
Confidence 3456999999999999999999987654322221111110 011111 0112489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHH-----HHHHh--cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESL-----DLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++ +.+++.+ ..+.. .++|+|+|+||+|+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISR---PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hHHhhcCCCcEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 88889999999999999988 3443332 22333 3789999999999963
No 144
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=146.21 Aligned_cols=116 Identities=20% Similarity=0.123 Sum_probs=72.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|++..+.....+ +++..+...... ......+.||||||+..|.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~----t~~~~~~~~~~~-----------~~~~~~l~i~Dt~G~~~~~ 83 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDP----NLEDTYSSEETV-----------DHQPVHLRVMDTADLDTPR 83 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCT----TCCEEEEEEEEE-----------TTEEEEEEEEECCC---CC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCC----CccceeeEEEEE-----------CCEEEEEEEEECCCCCcch
Confidence 4556699999999999999999998765432222 122111110000 0011248899999999887
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh------cCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE------RSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~------~~vPiIvvlNKiDl~~ 426 (657)
.+ .+++..+|++|||+|+++....+... ++..+.. .++|+|+|+||+|+..
T Consensus 84 ~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 84 NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp CT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred hH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 65 45778899999999999732222221 2222322 4899999999999963
No 145
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=1.5e-16 Score=176.15 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=83.0
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC--
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG-- 369 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG-- 369 (657)
.+++.|.|+|+|++|+|||||+|+|++..+. .....|+|.+.....+.+ ....++||||||
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~----------------~~~~~~liDT~G~~ 82 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW----------------LNYDFNLIDTGGID 82 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTT----------------CSSCCEEECCCC--
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEE----------------CCceEEEEECCCCC
Confidence 3467788999999999999999999987653 233455555433333332 223589999999
Q ss_pred ------CCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 370 ------HESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 370 ------h~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
+..|...+..++..+|++|||||+.+++.......+.+++..++|+|+|+||+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 83 IGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp ----CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 44555666667788999999999999999999988899999999999999999985
No 146
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.61 E-value=1.4e-15 Score=147.14 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=73.2
Q ss_pred ccCCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccce--eeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 293 ENLRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGAT--YFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 293 ~~~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~--~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
..++...|+|+|.+|+|||||+++|++..+...... | .+.+ .+.+.. ....+.||||||+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t--~~~~~~~~~~~~--------------~~~~l~i~Dt~G~ 77 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--E--GGRFKKEIVVDG--------------QSYLLLIRDEGGP 77 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--T--CEEEEEEEEETT--------------EEEEEEEEECSSS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--C--cceEEEEEEECC--------------EEEEEEEEECCCC
Confidence 345667799999999999999999998765432211 1 1111 111111 0123788999999
Q ss_pred CcchhhhhcCCCCCceeeEeecccCCCchhHHH-HHHHHHh----cCCceEEEecccccc
Q 036359 371 ESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 371 ~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~----~~vPiIvvlNKiDl~ 425 (657)
..|. ++..+|++|||+|+++....+... ++..+.. .++|+|+|+||+|+.
T Consensus 78 ~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 78 PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred hhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9887 445699999999999843333322 2233333 468999999999985
No 147
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=8.3e-16 Score=147.48 Aligned_cols=109 Identities=28% Similarity=0.401 Sum_probs=71.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC-------
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH------- 370 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh------- 370 (657)
+.|+|+|++|+|||||+++|++..+..+..+|+|..... +.+ ..+.||||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEW------------------KNHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEE------------------TTEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--Eec------------------CCEEEEECCCccccccCC
Confidence 359999999999999999999987766555555533221 111 13899999994
Q ss_pred ----CcchhhhhcC----CCCCceeeEeecccC-----------CCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 371 ----ESFTNLRSWG----PGLCDIAILVVDIMD-----------GIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 371 ----~~f~~~~~~g----~~~aD~aIlVVDa~~-----------g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..|..++..+ +..++++++|+|+.. +...++.+.+..+...++|+|+|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 4444444333 344556666666543 1122233444556667899999999999963
No 148
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=148.80 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=74.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
..+.|+|+|.+|+|||||+++|.+.........+++.......+.+.. ....+.||||||+..|..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~Dt~g~~~~~~ 87 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK--------------EEVTLVVYDIWEQGDAGG 87 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETT--------------EEEEEEEECCCCCSGGGH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECC--------------EEEEEEEEecCCCccchh
Confidence 345699999999999999999986543222222222211111111111 012378999999988764
Q ss_pred -hhhcCCCCCceeeEeecccCCCchhHHH----HHHHHHh----cCCceEEEeccccccc
Q 036359 376 -LRSWGPGLCDIAILVVDIMDGIKPQTIE----SLDLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 -~~~~g~~~aD~aIlVVDa~~g~~~qt~e----~l~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++ +.++. ++..+.. .++|+|+|+||+|+..
T Consensus 88 ~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 88 WLRDHCLQTGDAFLIVFSVTD---RRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp HHHHHHHHHCSEEEEEEETTC---HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred hhHHHhhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 66666778999999999987 33333 2222322 3789999999999963
No 149
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.61 E-value=8.4e-16 Score=170.93 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=83.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
..|+|+|++|+|||||+|+|++... ......|+|.++....+.+.. ..++||||||+..|...
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g----------------~~l~liDT~G~~~~~~~ 297 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK----------------TMFRLTDTAGLREAGEE 297 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETT----------------EEEEEEC----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC----------------eEEEEEECCCCCcchhH
Confidence 3499999999999999999998753 234445666655444444322 34899999999876543
Q ss_pred h--------hcCCCCCceeeEeecccCCCchh----HHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhh
Q 036359 377 R--------SWGPGLCDIAILVVDIMDGIKPQ----TIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQS 444 (657)
Q Consensus 377 ~--------~~g~~~aD~aIlVVDa~~g~~~q----t~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~ 444 (657)
+ ..++..+|++|||||++++...+ ....+..+. ++|+|+|+||+|+... ...
T Consensus 298 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~------~~~-------- 361 (476)
T 3gee_A 298 IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN------ADA-------- 361 (476)
T ss_dssp ----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT------THH--------
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc------cch--------
Confidence 2 34678899999999999987763 333333333 7899999999999641 100
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 445 KDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 445 ~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
.. ..|...+ .+++|++||+++.++.+++...
T Consensus 362 ------------~~-~~l~~~~--------------~~~~i~vSAktg~GI~eL~~~i 392 (476)
T 3gee_A 362 ------------LI-RAIADGT--------------GTEVIGISALNGDGIDTLKQHM 392 (476)
T ss_dssp ------------HH-HHHHHHH--------------TSCEEECBTTTTBSHHHHHHHH
T ss_pred ------------hH-HHHHhcC--------------CCceEEEEECCCCCHHHHHHHH
Confidence 00 1122211 1578999999999998876653
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.60 E-value=3.1e-15 Score=147.54 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=78.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.+...+. ..+.+.. ....+.||||||+..|..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~ 91 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDT--------------QRIELSLWDTSGSPYYDN 91 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSS--------------SEEEEEEEEECCSGGGTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECC--------------EEEEEEEEeCCCcHhhhH
Confidence 3456999999999999999999987765332222111110 0111110 112489999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHHHH-----HHHHh--cCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIESL-----DLLKE--RSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~--~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++ +.++..+ ..+.. .++|+|+|+||+|+..
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISR---PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred HHHhhccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 88889999999999999987 3343332 23333 3789999999999963
No 151
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3e-15 Score=145.47 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=74.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.++.... ..+.+.. ....+.||||||+.. ..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~~~l~Dt~G~~~-~~ 90 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDD--------------EVVSMEILDTAGQED-TI 90 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETT--------------EEEEEEEEECCCCCC-CH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECC--------------EEEEEEEEECCCCCc-cc
Confidence 4556999999999999999999987654322221111110 0011110 112489999999987 66
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH-HHHHHHH----hcCCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLK----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~----~~~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|+++....... .++..+. ..++|+|+|+||+|+..
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 666777889999999999873221111 1222222 35789999999999964
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.59 E-value=1.4e-15 Score=157.14 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=83.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccC--------ceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAG--------GITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG 369 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~--------GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG 369 (657)
..|+|+|++|+|||||+|+|++..+.....+ +++.+.....+.... . ...++||||||
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------~---~~~l~liDTpG 74 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG-----------V---QLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC-------------C---CEEEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCC-----------e---EEEEEEEECCC
Confidence 4599999999999999999988765433221 111111111111110 0 01489999999
Q ss_pred CCcchh-------hh-------h----------c-C--CCCCceeeEeecc-cCCCchhHHHHHHHHHhcCCceEEEecc
Q 036359 370 HESFTN-------LR-------S----------W-G--PGLCDIAILVVDI-MDGIKPQTIESLDLLKERSVDFIIALSK 421 (657)
Q Consensus 370 h~~f~~-------~~-------~----------~-g--~~~aD~aIlVVDa-~~g~~~qt~e~l~~l~~~~vPiIvvlNK 421 (657)
+.++.. +. . + . ...+|++||+|+. .+++.+.....+..+.. ++|+|+|+||
T Consensus 75 ~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK 153 (274)
T 3t5d_A 75 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 153 (274)
T ss_dssp CSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEec
Confidence 854321 11 0 0 1 1236788888855 45888989888888887 8999999999
Q ss_pred cccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhc
Q 036359 422 ADKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLA 500 (657)
Q Consensus 422 iDl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~ 500 (657)
+|++. .. .+......+...+... .++++++||.++.++.+.+.
T Consensus 154 ~D~~~------~~---------------e~~~~~~~i~~~l~~~---------------~i~v~~~sa~~~~~~~~l~~ 196 (274)
T 3t5d_A 154 ADTLT------PE---------------ECQQFKKQIMKEIQEH---------------KIKIYEFPETDDEEENKLVK 196 (274)
T ss_dssp GGGSC------HH---------------HHHHHHHHHHHHHHHT---------------TCCCCCC-----------CH
T ss_pred cCCCC------HH---------------HHHHHHHHHHHHHHHc---------------CCeEEcCCCCCChhHHHHHH
Confidence 99963 11 1111122344444433 35688999999888766443
No 153
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.59 E-value=4.6e-15 Score=155.94 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=79.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc---
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF--- 373 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f--- 373 (657)
..|+|+|.+|+|||||+++|++.... .....|.|..+....+.+.. ...+.||||||+..|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~~ 68 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG---------------NMTLNLWDCGGQDVFMEN 68 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT---------------TEEEEEEEECCSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC---------------ceEEEEEECCCcHHHhhh
Confidence 35999999999999999999876322 22234455444333333211 124899999999988
Q ss_pred --hhhhhcCCCCCceeeEeecccCCCchhHHHHHH----HHHh--cCCceEEEecccccc
Q 036359 374 --TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLD----LLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 374 --~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~~--~~vPiIvvlNKiDl~ 425 (657)
..++..++..+|++|+|+|+++....+....|. .+.. .++|+|+|+||+|+.
T Consensus 69 ~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 69 YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp HHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred hhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 556666778899999999999865544443322 2221 279999999999996
No 154
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.37 E-value=9.7e-17 Score=157.01 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+. -....+.||||||+..|..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~l~i~Dt~G~~~~~~ 93 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD--------------GKPVNLGLWDTAGQEDYDR 93 (204)
Confidence 455699999999999999999997665422111110000 0011110 0112377999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHH--HHHHHHHhc--CCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTI--ESLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~--e~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|++++...+.. .++..+... ++|+|+|+||+|+..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 888889999999999999885443333 233334433 789999999999964
No 155
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.58 E-value=3.8e-15 Score=141.75 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=70.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
++...|+|+|++|+|||||+++|++..+.. ..+ +++..+...-... + ....+.||||||+..+.
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~----t~~~~~~~~~~~~--------~---~~~~l~i~Dt~G~~~~~ 68 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEK----TESEQYKKEMLVD--------G---QTHLVLIREEAGAPDAK 68 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSS----CSSSEEEEEEEET--------T---EEEEEEEEECSSSCCHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCC----CcceeEEEEEEEC--------C---EEEEEEEEECCCCchhH
Confidence 345669999999999999999999877653 111 1222111100000 0 01238899999998743
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH-HHHH---h---cCCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK---E---RSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~---~---~~vPiIvvlNKiDl~ 425 (657)
++..+|++|||+|+++.........| ..+. . .++|+|+|+||+|+.
T Consensus 69 -----~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 69 -----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -----HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 34569999999999983322222221 1222 2 378999999999984
No 156
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.57 E-value=2.5e-15 Score=166.59 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=75.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
..|+|+|++|+|||||+|+|++..+. .....|+|.++....+.+. ...++||||||+.++...
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~----------------g~~v~liDT~G~~~~~~~ 288 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG----------------GIPVQVLDTAGIRETSDQ 288 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET----------------TEEEEECC----------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC----------------CEEEEEEECCccccchhH
Confidence 34999999999999999999986543 3344566655443333332 234899999998776432
Q ss_pred --------hhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 377 --------RSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 --------~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
....+..+|++|+|||++++...+..+.+..+.. .|+|+|+||+|+..
T Consensus 289 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~ 344 (462)
T 3geh_A 289 VEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVE 344 (462)
T ss_dssp ----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSC
T ss_pred HHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCc
Confidence 2335788999999999999888877776666543 79999999999964
No 157
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.57 E-value=1.4e-14 Score=155.42 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=76.8
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+.+.|+|+|++|+|||||+++|++..+..+...+.|.++....+... ...+.||||||+..+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG----------------YFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET----------------TEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec----------------CceEEEEeCCCccccc
Confidence 356779999999999999999999877544444444544333332221 1248999999986542
Q ss_pred h---------hhhcCCCCCceeeEeecccCCC--chhHH-HHHHHHHh-c-CCceEEEeccccccc
Q 036359 375 N---------LRSWGPGLCDIAILVVDIMDGI--KPQTI-ESLDLLKE-R-SVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~---------~~~~g~~~aD~aIlVVDa~~g~--~~qt~-e~l~~l~~-~-~vPiIvvlNKiDl~~ 426 (657)
. ........+|++|||+|++++. ..... ..+..+.. . ++|+|+|+||+|+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 1 1112335699999999988743 33332 23333332 2 899999999999963
No 158
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.56 E-value=6.3e-15 Score=162.40 Aligned_cols=115 Identities=20% Similarity=0.272 Sum_probs=79.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
..+.|+|+|++|+|||||+++|++.... .+...|+|.+.....+.+.. ..+.+|||||+..+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g----------------~~~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG----------------RKYVFVDTAGLRRKS 242 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT----------------EEEEESSCSCC----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC----------------EEEEEEECCCCcccc
Confidence 3467999999999999999999987632 34455666554333333322 248899999985433
Q ss_pred hh-----------h-hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 375 NL-----------R-SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~-----------~-~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.. + ...+..+|++|+|+|+.++...+....+.++...++|+|+|+||+|+..
T Consensus 243 ~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp -------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred ccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 22 1 2345668999999999998888777667777888999999999999963
No 159
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=3.8e-15 Score=146.97 Aligned_cols=112 Identities=26% Similarity=0.225 Sum_probs=74.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+.+.|+|+|++|+|||||+++|.+..+.... ......++.. + ....+.|||||||..|.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~-~~~~~~~~~~---~----------------~~~~~~l~Dt~G~~~~~ 69 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAAD---Y----------------DGSGVTLVDFPGHVKLR 69 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETT---G----------------GGSSCEEEECCCCGGGT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee-eecCceEEEE---e----------------eCceEEEEECCCcHHHH
Confidence 35567999999999999999999976643210 0011111100 0 12348999999999998
Q ss_pred hhhhcCCCC----CceeeEeeccc-CCC-chhHHHHHHHHH-------hcCCceEEEeccccccc
Q 036359 375 NLRSWGPGL----CDIAILVVDIM-DGI-KPQTIESLDLLK-------ERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~----aD~aIlVVDa~-~g~-~~qt~e~l~~l~-------~~~vPiIvvlNKiDl~~ 426 (657)
.++..++.. +|++|||||++ +.. ......++..+. ..++|+|+|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 776666655 89999999998 321 122223332221 24799999999999964
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.55 E-value=7.5e-15 Score=153.88 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=78.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+.+.|+|+|++|+|||||+++|++..+.....+.+...+ ...+.+.. ....+.||||||+..|..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDG--------------KPVNLGLWDTAGLEDYDR 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETT--------------EEEEEEEEEECCCGGGTT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECC--------------EEEEEEEEeCCCchhhhH
Confidence 345699999999999999999987665432222111111 11111111 011367999999999998
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH--HHHHHHhc--CCceEEEeccccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE--SLDLLKER--SVDFIIALSKADKLY 426 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e--~l~~l~~~--~vPiIvvlNKiDl~~ 426 (657)
++..++..+|++|||+|++++...+... ++..+... ++|+|+|+||+|+..
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 8888999999999999998843322221 22333333 899999999999963
No 161
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.55 E-value=6e-15 Score=164.77 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=100.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
+...|+|+|.+|+|||||+++|++..+... ..+++..+..+. +....+.||||||+..|..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-----~~T~~~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~ 381 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVT--------------YKNVKFNVWDVGGQDKIRP 381 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEE--------------SSSCEEEEEEECCCGGGSG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc-----CCccceeEEEEE--------------eCCEEEEEEECCCcHHHHH
Confidence 445699999999999999999997764321 112232222211 1234599999999999999
Q ss_pred hhhcCCCCCceeeEeecccCCCchhHHH-HHHHH-Hh---cCCceEEEecccccccCcccCCCccHHHHHHhhhHHHHHH
Q 036359 376 LRSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLL-KE---RSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDVEDE 450 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l-~~---~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~~~~ 450 (657)
++..++..+|++|||||++++...+... .+..+ .. .++|+|||+||+|+.. ..+.
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~------~~~~-------------- 441 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD------AMKP-------------- 441 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS------CCCH--------------
T ss_pred HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc------CCCH--------------
Confidence 9999999999999999999853332222 22222 22 4789999999999963 1111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 451 FKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 451 ~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
..+... .++.. .....+++|++||++|.++.+.+.+
T Consensus 442 -----~~~~~~---~~~~~-------~~~~~~~~~~~SA~~g~gi~~l~~~ 477 (497)
T 3lvq_E 442 -----HEIQEK---LGLTR-------IRDRNWYVQPSCATSGDGLYEGLTW 477 (497)
T ss_dssp -----HHHHHH---TTCTT-------CCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred -----HHHHHH---hchhh-------hhcCCeEEEEEECCCCCCHHHHHHH
Confidence 112211 12211 0124578999999999999887654
No 162
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.55 E-value=2e-14 Score=146.28 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccc--cCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC---
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGE--AGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH--- 370 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~--~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh--- 370 (657)
....|+|+|++|+|||||+|+|++..+.... ..|+|.......+.+. ...++||||||+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~----------------~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD----------------KCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET----------------TEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC----------------CcEEEEEECCCCCCC
Confidence 3456999999999999999999988754322 2234444333333322 234899999997
Q ss_pred -----CcchhhhhcCC----CCCceeeEeecccCCCchhHHHHHHHHHhc------CCceEEEecccccc
Q 036359 371 -----ESFTNLRSWGP----GLCDIAILVVDIMDGIKPQTIESLDLLKER------SVDFIIALSKADKL 425 (657)
Q Consensus 371 -----~~f~~~~~~g~----~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~------~vPiIvvlNKiDl~ 425 (657)
..|...+.+++ ..+|++|||+|++. +.......+..+... +.|+|+|+||+|+.
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp THHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 33433333333 88999999999985 666666666666553 78999999999995
No 163
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.55 E-value=3.7e-15 Score=165.98 Aligned_cols=110 Identities=17% Similarity=0.272 Sum_probs=83.5
Q ss_pred CeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC-cchh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE-SFTN 375 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~-~f~~ 375 (657)
+.|+|+|++|+|||||+|+|++..+. .....|+|.++....+.+.. ..++||||||+. .+..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g----------------~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG----------------ILFRIVDTAGVRSETND 307 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT----------------EEEEEEESSCCCSSCCT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC----------------eEEEEEECCCccccchh
Confidence 45999999999999999999987532 44456677665544444432 248999999998 6542
Q ss_pred --------hhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 376 --------LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 376 --------~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
....++..+|++|+|||++++...+..+.+..+ .++|+|+|+||+|+.
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 233466789999999999998777666666555 478999999999996
No 164
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.54 E-value=1.5e-14 Score=149.98 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=81.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccc------cCceeeec-------------cceeeecccccchh----hcc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGE------AGGITQQI-------------GATYFPVENIQKRT----EKL 351 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~------~~GiT~~i-------------g~~~~~~~~~~~~~----~~~ 351 (657)
...|.|+|+|.+|+|||||+|+|++..+.... .++.++.+ |..+.....+.... ..+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45678999999999999999999998763111 11111110 00000110000000 000
Q ss_pred cc---cc----------ccCCCcEEEEeCCCCC-------------cchhhhhcCCCCCceee-EeecccCCCchhHH-H
Q 036359 352 NA---DA----------KLKVPGLLVVDTPGHE-------------SFTNLRSWGPGLCDIAI-LVVDIMDGIKPQTI-E 403 (657)
Q Consensus 352 ~~---~~----------~~~~~~l~iIDTPGh~-------------~f~~~~~~g~~~aD~aI-lVVDa~~g~~~qt~-e 403 (657)
.. +. ......++||||||+. .|..++..++..++.+| +|+|++.++..+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00 00 0012579999999964 24455666777777666 79999988877764 4
Q ss_pred HHHHHHhcCCceEEEeccccccc
Q 036359 404 SLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 404 ~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+..+...++|+|+|+||+|+..
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSC
T ss_pred HHHHhCCCCCeEEEEEEccccCC
Confidence 56667777899999999999974
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.53 E-value=4.1e-14 Score=138.53 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=72.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccc--cccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQE--GEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES- 372 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~--~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~- 372 (657)
+..+|+|+|++|+|||||+++|++..+.. ....|.|...+. +.+. ..+.|+||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~-----------------~~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVA-----------------DGKRLVDLPGYGYA 85 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEE-----------------TTEEEEECCCCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEec-----------------CCEEEEECcCCccc
Confidence 44569999999999999999999876211 122333332221 1111 1488999999853
Q ss_pred ---------chhhhh---cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 373 ---------FTNLRS---WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 373 ---------f~~~~~---~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
|..... .....+|++++|+|+..+........+.++...++|+++|+||+|+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 222221 223578999999999988766555556667778999999999999974
No 166
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.52 E-value=1.1e-14 Score=140.37 Aligned_cols=117 Identities=20% Similarity=0.137 Sum_probs=72.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc--ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN--VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~--v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
..|+|+|.+|+|||||+++|.+.. +.... ..++|..+..+... +.. ..-....+.||||||+..|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~----~~t~g~~~~~~~~~------~~~-~~~~~~~~~i~Dt~G~~~~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ----SATVGIDVKDWPIQ------IRD-KRKRDLVLNVWDFAGREEFYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC----------------CEEEEEEECSHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCc----ceeccEEeEEeeec------ccc-CCCCceEEEEEecCCCHHHHH
Confidence 459999999999999999999852 22111 11222222211100 000 000123489999999998888
Q ss_pred hhhcCCCCCceeeEeecccCCC-chhHH-HHHHHHHh--cCCceEEEecccccc
Q 036359 376 LRSWGPGLCDIAILVVDIMDGI-KPQTI-ESLDLLKE--RSVDFIIALSKADKL 425 (657)
Q Consensus 376 ~~~~g~~~aD~aIlVVDa~~g~-~~qt~-e~l~~l~~--~~vPiIvvlNKiDl~ 425 (657)
++..++..+|++|+|+|++++. ..... .++..+.. .++|+|+|+||+|+.
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 7777778899999999998852 11122 22232322 378999999999996
No 167
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=144.42 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=76.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccC--ceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAG--GITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES- 372 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~--GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~- 372 (657)
+.+.|+|+|++|+|||||+++|++..+...... ++|..+....+.+.. ..++||||||+.+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~i~liDTpG~~~~ 91 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE----------------TELVVVDTPGIFDT 91 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT----------------EEEEEEECCSCC--
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC----------------ceEEEEECCCccCC
Confidence 456699999999999999999999876543322 455444333333322 2489999999653
Q ss_pred ----------chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHH-----hcCCceEEEeccccccc
Q 036359 373 ----------FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLK-----ERSVDFIIALSKADKLY 426 (657)
Q Consensus 373 ----------f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-----~~~vPiIvvlNKiDl~~ 426 (657)
|...+...+..+|++|||+|++. +.......+..+. ..+.|+|||+||+|++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp ---CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 33445556678899999999874 4445555554432 23569999999999974
No 168
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.51 E-value=3.8e-14 Score=145.33 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=76.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
++.+.|+|+|++|+|||||+++|++..+. .....+.|.......+.+. ...++|||||||.+|
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~l~liDTpG~~~~ 97 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG----------------GFTINIIDTPGLVEA 97 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET----------------TEEEEEEECCCSEET
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC----------------CeeEEEEECCCCCCc
Confidence 35567999999999999999999987752 3333444443333333322 224899999999887
Q ss_pred hhhhhcCC---------CCCceeeEeecccC-CCchhHHHHHHHHHhc-C----CceEEEecccccc
Q 036359 374 TNLRSWGP---------GLCDIAILVVDIMD-GIKPQTIESLDLLKER-S----VDFIIALSKADKL 425 (657)
Q Consensus 374 ~~~~~~g~---------~~aD~aIlVVDa~~-g~~~qt~e~l~~l~~~-~----vPiIvvlNKiDl~ 425 (657)
..+...++ ..+|++|||++++. ++.......+..+... + .|+|+|+||+|+.
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 53322221 36899999988765 3444444555544432 2 4899999999985
No 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=1.1e-13 Score=137.59 Aligned_cols=113 Identities=15% Similarity=0.229 Sum_probs=71.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-ch
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES-FT 374 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~-f~ 374 (657)
...|+|+|.+|+|||||+++|.+.... ..... .+|..++... ..+. +. ...+.+|||+|... +.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~----~~g~d~~~~~------i~~~-~~---~~~l~~~Dt~g~~~~~~ 102 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE----VLGEDTYERT------LMVD-GE---SATIILLDMWENKGENE 102 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------CCTTEEEEE------EEET-TE---EEEEEEECCTTTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC----ccceeeEEEE------EEEC-Ce---eeEEEEeecCCCcchhh
Confidence 356999999999999999999864321 11111 1222111100 0000 00 11378999999887 55
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH----HHHHh----cCCceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKE----RSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~----~~vPiIvvlNKiDl~~ 426 (657)
.++..++..+|++|+|+|+++ ..+++.+ ..+.. .++|+|+|+||+|+..
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~---~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITD---RASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTC---HHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred hHHHHHHhhCCEEEEEEECCC---HHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 566667788999999999987 4444332 22332 3789999999999963
No 170
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.49 E-value=1.1e-14 Score=155.38 Aligned_cols=113 Identities=15% Similarity=0.063 Sum_probs=73.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc----c
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES----F 373 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~----f 373 (657)
+.|+|+|++|+||||||++|++.........+.|.......+.+.. ...++||||||+.. +
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~---------------~~~~~l~DtPG~i~~a~~~ 223 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD---------------GRSFVMADLPGLIEGAHQG 223 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS---------------SCEEEEEEHHHHHHHTTCT
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC---------------CceEEEecCCCCccccccc
Confidence 3599999999999999999998664433334444433333333221 13489999999632 2
Q ss_pred ---hhhhhcCCCCCceeeEeecccCC---CchhHHH-HHHHHHh-----cCCceEEEecccccc
Q 036359 374 ---TNLRSWGPGLCDIAILVVDIMDG---IKPQTIE-SLDLLKE-----RSVDFIIALSKADKL 425 (657)
Q Consensus 374 ---~~~~~~g~~~aD~aIlVVDa~~g---~~~qt~e-~l~~l~~-----~~vPiIvvlNKiDl~ 425 (657)
.....+.+..+|++|+|||+++. ...+... .+..+.. .++|+|+|+||+|+.
T Consensus 224 ~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 224 VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred chhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 22233445569999999999862 2222222 2334443 378999999999996
No 171
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2e-14 Score=138.72 Aligned_cols=110 Identities=25% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+.+.|+|+|++|+|||||+++|.+..+.... .+....++. . +....+.||||||+..|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~~~~~~~~---~----------------~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAA---D----------------YDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------C----------------CCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc-ccCCCceee---e----------------ecCCeEEEEECCCCchHH
Confidence 35567999999999999999999986643210 000101110 0 012358899999999887
Q ss_pred hhhhcCCCC----CceeeEeecccCCCchhHH----HHHHHHH-------hcCCceEEEeccccccc
Q 036359 375 NLRSWGPGL----CDIAILVVDIMDGIKPQTI----ESLDLLK-------ERSVDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~----aD~aIlVVDa~~g~~~qt~----e~l~~l~-------~~~vPiIvvlNKiDl~~ 426 (657)
..+..++.. +|++|||+|++.. ..++ .++..+. ..++|+|+|+||+|+..
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVD--PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCC--HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCC--chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 655555543 8999999999821 2222 2222221 13799999999999974
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.48 E-value=1e-13 Score=149.16 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=69.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-----
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES----- 372 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~----- 372 (657)
++|+|+|++|+|||||+|+|++..+......+.|.+.....+.+. ...+.|+||||+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~----------------g~~v~l~DT~G~i~~lp~~ 243 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN----------------NRKIMLVDTVGFIRGIPPQ 243 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET----------------TEEEEEEECCCBCSSCCGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC----------------CEEEEEEeCCCchhcCCHH
Confidence 459999999999999999999877543333444543332233322 12488999999732
Q ss_pred ----chhhhhcCCCCCceeeEeecccCCC--chhHHH-HHHHHHh---cCCceEEEeccccccc
Q 036359 373 ----FTNLRSWGPGLCDIAILVVDIMDGI--KPQTIE-SLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 373 ----f~~~~~~g~~~aD~aIlVVDa~~g~--~~qt~e-~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
|... ...+..+|++|+|+|++++. ...... ....+.. .++|+|+|+||+|+.+
T Consensus 244 lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 244 IVDAFFVT-LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp GHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred HHHHHHHH-HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 3222 33578899999999998754 222221 1223333 4689999999999974
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.48 E-value=3.7e-14 Score=160.08 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=78.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
.+...|+|+|++|+|||||+++|++..+.... ...+|..+....... +..+..........+.||||||+..|.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~----~~t~g~~~~~~~~~~--~~~v~~~~~~~~~~~~i~Dt~G~e~~~ 112 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKE----SQTHGLNVVTKQAPN--IKGLENDDELKECLFHFWDFGGQEIMH 112 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGG--SGGGTTCSTTTTCEEEEECCCSCCTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceEEEEecccc--ccceeecCCCceEEEEEEECCcHHHHH
Confidence 45567999999999999999999988765332 222333333211000 000000111123459999999999998
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcC--CceEEEeccccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS--VDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~--vPiIvvlNKiDl~~ 426 (657)
.+....+..+|++|+|+|++.. ......+..+..++ +|+|+|+||+|+..
T Consensus 113 ~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 113 ASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp TTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred HHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 8777777889999999999874 33334445565544 99999999999964
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.47 E-value=1.6e-13 Score=133.78 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=74.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhh
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLR 377 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~ 377 (657)
..|+|+|++|+|||||+++|.+..+.......++..+....+.+... ...+.||||||+..|..++
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~--------------~~~~~i~Dt~g~~~~~~~~ 71 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK--------------TIKAQIWDTAGQERYRRIT 71 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE--------------EEEEEEEECSSGGGTTCCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCchhhhhhh
Confidence 45999999999999999999987654322221111111111221110 0137899999999887777
Q ss_pred hcCCCCCceeeEeecccCCCchhHH-HHHHHHHh---cCCceEEEeccccccc
Q 036359 378 SWGPGLCDIAILVVDIMDGIKPQTI-ESLDLLKE---RSVDFIIALSKADKLY 426 (657)
Q Consensus 378 ~~g~~~aD~aIlVVDa~~g~~~qt~-e~l~~l~~---~~vPiIvvlNKiDl~~ 426 (657)
..++..+|++|+|+|+.+....... .++..+.. .+.|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 6677889999999999873322222 22222222 4688999999999963
No 175
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.45 E-value=2.1e-13 Score=132.71 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=66.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc--cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc-ch
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV--QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES-FT 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v--~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~-f~ 374 (657)
..|+|+|.+|+|||||+++|.+... ... ..+++.+.....+.++. . ...+.+|||+|... +.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~---~~~l~~~Dt~~~~~~~~ 71 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDG-----------E---SATIILLDMWENKGENE 71 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETT-----------E---EEEEEEECCCCC----C
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECC-----------e---EEEEEEEEeccCcchhh
Confidence 4599999999999999999985322 111 11111111001111110 0 11368999999876 44
Q ss_pred hhhhcCCCCCceeeEeecccCCCchhHHHHH----HHHHh----cCCceEEEecccccc
Q 036359 375 NLRSWGPGLCDIAILVVDIMDGIKPQTIESL----DLLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 375 ~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~~----~~vPiIvvlNKiDl~ 425 (657)
.++..++..+|++|+|+|+++ ..+++.+ ..+.. .++|+|+|+||+|+.
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~---~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITD---RASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTC---HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred hHHHhhcccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 455556677999999999987 3343322 22222 378999999999986
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.45 E-value=9.9e-14 Score=145.15 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=52.6
Q ss_pred CcEEEEeCCCCCc-------------chhhhhcCCCCCceeeEeecc-cCCCchhH-HHHHHHHHhcCCceEEEeccccc
Q 036359 360 PGLLVVDTPGHES-------------FTNLRSWGPGLCDIAILVVDI-MDGIKPQT-IESLDLLKERSVDFIIALSKADK 424 (657)
Q Consensus 360 ~~l~iIDTPGh~~-------------f~~~~~~g~~~aD~aIlVVDa-~~g~~~qt-~e~l~~l~~~~vPiIvvlNKiDl 424 (657)
..++||||||+.. |..++..++..+|++|||||+ +.++..+. ...+..+...++|+|+|+||+|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl 210 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCccc
Confidence 5699999999864 445566677889999999997 55665444 36667777789999999999999
Q ss_pred cc
Q 036359 425 LY 426 (657)
Q Consensus 425 ~~ 426 (657)
..
T Consensus 211 ~~ 212 (315)
T 1jwy_B 211 MD 212 (315)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 177
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.45 E-value=3e-13 Score=139.18 Aligned_cols=115 Identities=16% Similarity=0.068 Sum_probs=75.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
+.+.|+|+|++|+|||||+|+|++..+. .+...|.|.......+.. ....++||||||+.+|.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR----------------AGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE----------------TTEEEEEEECCCSEETT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee----------------CCeEEEEEECCCCCCCc
Confidence 4567999999999999999999987753 233334443222122211 12349999999998765
Q ss_pred hhh-------hc--CCCCCceeeEeecccC-CCchhHHHHHHHHHhc-C----CceEEEeccccccc
Q 036359 375 NLR-------SW--GPGLCDIAILVVDIMD-GIKPQTIESLDLLKER-S----VDFIIALSKADKLY 426 (657)
Q Consensus 375 ~~~-------~~--g~~~aD~aIlVVDa~~-g~~~qt~e~l~~l~~~-~----vPiIvvlNKiDl~~ 426 (657)
.+. .+ ....+|++|||+|++. .+.......+..+... + +|+|+|+||+|+..
T Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 221 11 1346999999988765 4555555666555432 3 69999999999863
No 178
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.44 E-value=3.1e-13 Score=142.80 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=75.4
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh---h
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN---L 376 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~---~ 376 (657)
|+++|..|+|||||++++.+..... ....+..++|..+..+.. ...+.||||||+++|.. +
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~v~~---------------~v~LqIWDTAGQErf~~~~l~ 65 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEHFST---------------LIDLAVMELPGQLNYFEPSYD 65 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEEECS---------------SSCEEEEECCSCSSSCCCSHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEEEcc---------------EEEEEEEECCCchhccchhhh
Confidence 7899999999999999877543321 111122334433322110 12499999999999963 3
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHHHHHH----HH--hcCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIESLDL----LK--ERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~----l~--~~~vPiIvvlNKiDl~~ 426 (657)
+..+++.++++|||+|+++. .......|.. +. ..++|+++|+||+|+..
T Consensus 66 ~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 66 SERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp HHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred hhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 56788999999999999986 4445554432 22 24789999999999963
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=5.9e-13 Score=144.87 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=46.9
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeeec--cceeeec----ccccchhhccccccccC---CCcEEEEeCCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQI--GATYFPV----ENIQKRTEKLNADAKLK---VPGLLVVDTPG 369 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~i--g~~~~~~----~~~~~~~~~~~~~~~~~---~~~l~iIDTPG 369 (657)
.|+|+|++|+|||||+|+|++........++.|.+. |..++.. ......+.. .++..+. ...+.||||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p-~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNP-QNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCC-SSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhccc-ccccccCCcceEEEEEEECCC
Confidence 589999999999999999998774444445555433 3222211 000000000 0000001 12489999999
Q ss_pred CCcc----h---hhhhcCCCCCceeeEeecccCC
Q 036359 370 HESF----T---NLRSWGPGLCDIAILVVDIMDG 396 (657)
Q Consensus 370 h~~f----~---~~~~~g~~~aD~aIlVVDa~~g 396 (657)
+..+ . +.....+..+|++|+|||++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8643 1 2223457889999999999875
No 180
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.43 E-value=1.6e-13 Score=155.22 Aligned_cols=132 Identities=23% Similarity=0.320 Sum_probs=86.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccc---ccccCceeeeccceeeecccc-cchh---------hccc-cc------
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQ---EGEAGGITQQIGATYFPVENI-QKRT---------EKLN-AD------ 354 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~---~~~~~GiT~~ig~~~~~~~~~-~~~~---------~~~~-~~------ 354 (657)
...+.|+|+|++|+|||||+|+|++..+. .+...+.+...+..+-....+ .+.+ ..+. .+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35678999999999999999999998763 222222222111111000000 0000 0000 00
Q ss_pred ---cccCC---CcEEEEeCCCCCc-----------chhhhhcCCCCCceeeEeecccC-CCchhHHHHHHHHHhcCCceE
Q 036359 355 ---AKLKV---PGLLVVDTPGHES-----------FTNLRSWGPGLCDIAILVVDIMD-GIKPQTIESLDLLKERSVDFI 416 (657)
Q Consensus 355 ---~~~~~---~~l~iIDTPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~-g~~~qt~e~l~~l~~~~vPiI 416 (657)
..+.. ..++||||||+.+ |...+..++..+|++|||||+++ ++..++..++..+...++|+|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 00000 2589999999875 55555666788999999999988 577888888888888889999
Q ss_pred EEeccccccc
Q 036359 417 IALSKADKLY 426 (657)
Q Consensus 417 vvlNKiDl~~ 426 (657)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999973
No 181
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=137.93 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=69.9
Q ss_pred CCCCeEEEEecC---------CCChhhhhhhhcCC---cccccccCce-eeeccceeeecccccchhhcccc--ccccCC
Q 036359 295 LRSPICCILGHV---------DAGKTRLLDCIRGT---NVQEGEAGGI-TQQIGATYFPVENIQKRTEKLNA--DAKLKV 359 (657)
Q Consensus 295 ~r~p~V~viG~v---------dsGKSTLl~~L~~~---~v~~~~~~Gi-T~~ig~~~~~~~~~~~~~~~~~~--~~~~~~ 359 (657)
.+...|+|+|.+ |+|||||+++|++. .+.....+++ +..+....+.+... ....... ...-..
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHF--LYWGEVSRSLEDCVE 94 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSE--EEEEEEC--------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccc--cccccccccccCCcE
Confidence 455679999999 99999999999983 3332222221 11111111110000 0000000 000012
Q ss_pred CcEEEEe-----------------------CCCCCcchhhhhcCCC---------------------CCceeeEeecccC
Q 036359 360 PGLLVVD-----------------------TPGHESFTNLRSWGPG---------------------LCDIAILVVDIMD 395 (657)
Q Consensus 360 ~~l~iID-----------------------TPGh~~f~~~~~~g~~---------------------~aD~aIlVVDa~~ 395 (657)
..+.||| ++|++.|..++..++. .+|++|||+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 3478888 4455555555555555 6999999999998
Q ss_pred C--CchhHHH-HHHHHH----hcCCceEEEecccccc
Q 036359 396 G--IKPQTIE-SLDLLK----ERSVDFIIALSKADKL 425 (657)
Q Consensus 396 g--~~~qt~e-~l~~l~----~~~vPiIvvlNKiDl~ 425 (657)
. ....... ++..+. ..++|+|+|+||+|+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 5 3322222 222222 3479999999999995
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.41 E-value=4e-13 Score=144.09 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=50.2
Q ss_pred CCcEEEEeCCCCCcc-------------hhhhhcCCCCCceeeEeecccC-CCc-hhHHHHHHHHHhcCCceEEEecccc
Q 036359 359 VPGLLVVDTPGHESF-------------TNLRSWGPGLCDIAILVVDIMD-GIK-PQTIESLDLLKERSVDFIIALSKAD 423 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f-------------~~~~~~g~~~aD~aIlVVDa~~-g~~-~qt~e~l~~l~~~~vPiIvvlNKiD 423 (657)
...++||||||+..+ ..+...++..+|++|||||+.. ... ......+..+...+.|+|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 346999999998876 4556667888999999998754 222 2334444555566889999999999
Q ss_pred ccc
Q 036359 424 KLY 426 (657)
Q Consensus 424 l~~ 426 (657)
+..
T Consensus 215 l~~ 217 (360)
T 3t34_A 215 LMD 217 (360)
T ss_dssp GCC
T ss_pred cCC
Confidence 974
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.41 E-value=5.3e-13 Score=155.06 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=54.0
Q ss_pred CcEEEEeCCCCCcc---hhhhhcCCCCCceeeEeecccCCCchhHHHHHH-HHHhcCCceEEEeccccccc
Q 036359 360 PGLLVVDTPGHESF---TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLD-LLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 360 ~~l~iIDTPGh~~f---~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+++||||||+.+. ...+..++..+|++|||+|++++........|. .+...+.|+|+|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 46999999997653 344556678899999999999988887777764 45667899999999999964
No 184
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.40 E-value=1e-12 Score=127.61 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=75.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNL 376 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~ 376 (657)
...|+|+|++|+|||||+++|.+..+.......++..+....+.+... . ..+.||||||+..|..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~-----------~---~~~~i~Dt~g~~~~~~~ 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-----------T---IKAQIWDTAGLERYRAI 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE-----------E---EEEEEEEECSCCSSSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE-----------E---EEEEEEECCCCcchhhh
Confidence 356999999999999999999987654332222222111111222110 0 12668999999998887
Q ss_pred hhcCCCCCceeeEeecccCCCchhHHH-HHHHHH---hcCCceEEEeccccccc
Q 036359 377 RSWGPGLCDIAILVVDIMDGIKPQTIE-SLDLLK---ERSVDFIIALSKADKLY 426 (657)
Q Consensus 377 ~~~g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~---~~~vPiIvvlNKiDl~~ 426 (657)
+...+..+|++|+|+|..+....+... ++..+. ..+.|+++++||+|+..
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 777778899999999987732211111 222222 23678999999999963
No 185
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=145.15 Aligned_cols=117 Identities=23% Similarity=0.308 Sum_probs=61.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCccccccc-C------ceeeeccceeeecccccchhhccccccccCCCcEEEEeCCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEA-G------GITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPG 369 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~-~------GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPG 369 (657)
+..|+|+|++|+|||||+++|++........ . +.|..+....+.+.. .+. ...++||||||
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~---------~~~---~~~l~i~DTpG 104 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE---------RGV---KLRLTVVDTPG 104 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-------------CE---EEEEEEEC---
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec---------CCc---ccceEEEEecc
Confidence 3458999999999999999988764322110 0 011111111111100 000 12489999999
Q ss_pred C-------Ccchhhhh-------cCC-------------CCCceeeEeecc-cCCCchhHHHHHHHHHhcCCceEEEecc
Q 036359 370 H-------ESFTNLRS-------WGP-------------GLCDIAILVVDI-MDGIKPQTIESLDLLKERSVDFIIALSK 421 (657)
Q Consensus 370 h-------~~f~~~~~-------~g~-------------~~aD~aIlVVDa-~~g~~~qt~e~l~~l~~~~vPiIvvlNK 421 (657)
+ ..|..++. .++ ..+|++||+|+. .+++.......+..+. .++|+|+|+||
T Consensus 105 ~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK 183 (361)
T 2qag_A 105 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAK 183 (361)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEEC
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEEC
Confidence 9 44433322 111 123567787775 5677766666655553 67999999999
Q ss_pred ccccc
Q 036359 422 ADKLY 426 (657)
Q Consensus 422 iDl~~ 426 (657)
+|+..
T Consensus 184 ~Dl~~ 188 (361)
T 2qag_A 184 ADTLT 188 (361)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 99963
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.38 E-value=6.6e-13 Score=142.10 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=77.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeecccee-------------------eecccccc-------hh
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATY-------------------FPVENIQK-------RT 348 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~-------------------~~~~~~~~-------~~ 348 (657)
...|.|+|+|.+++|||||+|+|++..+.....+-+|...+... ..+..+.. +.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 56688999999999999999999998763211111121111000 00000000 00
Q ss_pred ----hcccc-c-----cccCCCcEEEEeCCCCCc-------------chhhhhcCCCC-CceeeEeecccCCCchhHH-H
Q 036359 349 ----EKLNA-D-----AKLKVPGLLVVDTPGHES-------------FTNLRSWGPGL-CDIAILVVDIMDGIKPQTI-E 403 (657)
Q Consensus 349 ----~~~~~-~-----~~~~~~~l~iIDTPGh~~-------------f~~~~~~g~~~-aD~aIlVVDa~~g~~~qt~-e 403 (657)
..+.. . .......++||||||+.. |..++..++.. .+++++|+|++.++..+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00000 0 001135699999999642 33455555544 4566667788777766654 3
Q ss_pred HHHHHHhcCCceEEEeccccccc
Q 036359 404 SLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 404 ~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+..+...+.|+|+|+||+|+..
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSC
T ss_pred HHHHhCcCCCceEEEeccccccC
Confidence 55666667899999999999974
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.35 E-value=9.3e-13 Score=141.15 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=65.5
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHH
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIK 437 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~ 437 (657)
..+.++||||||...... ..+..+|++|+|+|+..+...+.+. ....++|+|||+||+|+.. ...+
T Consensus 170 ~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl~~------~~~~- 235 (355)
T 3p32_A 170 AGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADGEH------HKEA- 235 (355)
T ss_dssp TTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCGGG------HHHH-
T ss_pred CCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCCcC------hhHH-
Confidence 456799999999654222 2347899999999987754433322 1124579999999999963 1011
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 438 KALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 438 ~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
......+...|...+.. ..+..+++|++||++|.++.+++..
T Consensus 236 --------------~~~~~~l~~~l~~~~~~--------~~~~~~~vi~iSA~~g~Gi~~L~~~ 277 (355)
T 3p32_A 236 --------------RLAARELSAAIRLIYPR--------EALWRPPVLTMSAVEGRGLAELWDT 277 (355)
T ss_dssp --------------HHHHHHHHHHHHHHSTT--------CCSCCCCEEEEBGGGTBSHHHHHHH
T ss_pred --------------HHHHHHHHHHHhhcccc--------ccCCCCceEEEEcCCCCCHHHHHHH
Confidence 11112222222221111 0112468999999999998886654
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.32 E-value=1.1e-12 Score=129.54 Aligned_cols=163 Identities=13% Similarity=0.064 Sum_probs=88.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeecc------------ceeeecccccchhh---cccccc-ccCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIG------------ATYFPVENIQKRTE---KLNADA-KLKV 359 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig------------~~~~~~~~~~~~~~---~~~~~~-~~~~ 359 (657)
+.++|+|+|++|+|||||+++|++.........-+..+++ ...+.++.....+. .+.... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4567999999999999999999865321111000111111 00000000000000 000000 2234
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHHHH
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKA 439 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~ 439 (657)
+.++||||||+...... .....+++|+|||+..+.... +..+...++|+++|+||+|+.... ..+
T Consensus 109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~~~----~~~---- 173 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAEAV----GAD---- 173 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHHHH----TCC----
T ss_pred CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCcch----hhH----
Confidence 57999999995211111 112467899999999875322 223344578999999999985300 001
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 440 LEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 440 L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
+..+...+...+ ..++++++||+++.++.+.+..
T Consensus 174 ---------------~~~~~~~~~~~~-------------~~~~i~~~Sa~~g~gi~~l~~~ 207 (221)
T 2wsm_A 174 ---------------VEKMKADAKLIN-------------PRAKIIEMDLKTGKGFEEWIDF 207 (221)
T ss_dssp ---------------HHHHHHHHHHHC-------------TTSEEEECBTTTTBTHHHHHHH
T ss_pred ---------------HHHHHHHHHHhC-------------CCCeEEEeecCCCCCHHHHHHH
Confidence 122333333221 2368999999999998876654
No 189
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.31 E-value=2.9e-12 Score=148.81 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=82.8
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeecccee-------------------eecccccch----h--
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATY-------------------FPVENIQKR----T-- 348 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~-------------------~~~~~~~~~----~-- 348 (657)
..-|.|+|+|++++|||||+|+|++..+ +.+. +.+|....... ..+..+... +
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~-g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS-SCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCC-ccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 5678899999999999999999999875 3322 22222100000 000000000 0
Q ss_pred -----hcccc-c-----cccCCCcEEEEeCCCCCc-------------chhhhhcCC-CCCceeeEeecccCCCchhHH-
Q 036359 349 -----EKLNA-D-----AKLKVPGLLVVDTPGHES-------------FTNLRSWGP-GLCDIAILVVDIMDGIKPQTI- 402 (657)
Q Consensus 349 -----~~~~~-~-----~~~~~~~l~iIDTPGh~~-------------f~~~~~~g~-~~aD~aIlVVDa~~g~~~qt~- 402 (657)
..+.. . .....+.++||||||... +..++..++ ..+|++|+|||+++++..+..
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00000 0 011234699999999654 112333333 578999999999998877766
Q ss_pred HHHHHHHhcCCceEEEeccccccc
Q 036359 403 ESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 403 e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+..+...+.|+|+|+||+|++.
T Consensus 208 ~ll~~L~~~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 208 KIAKEVDPQGQRTIGVITKLDLMD 231 (772)
T ss_dssp HHHHHHCTTCSSEEEEEECTTSSC
T ss_pred HHHHHHHhcCCCEEEEEeCcccCC
Confidence 677788888999999999999974
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.30 E-value=1.9e-12 Score=137.94 Aligned_cols=61 Identities=20% Similarity=0.086 Sum_probs=41.8
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+.++||||||+.++.... ...+|++|+|+|+..+...++... ...++|+|+|+||+|+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCC
Confidence 45679999999988765543 478999999999987543222211 12367999999999996
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.24 E-value=1.9e-11 Score=133.61 Aligned_cols=112 Identities=19% Similarity=0.118 Sum_probs=67.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch---
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT--- 374 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~--- 374 (657)
..|+|+|++|+||||||++|++...........|.......+.+.. ...++++||||+....
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~---------------~~~~~l~DtpGli~~a~~~ 222 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE---------------EERFTLADIPGIIEGASEG 222 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS---------------SCEEEEEECCCCCCCGGGS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC---------------cceEEEEeccccccchhhh
Confidence 4599999999999999999998753222222222211111122111 1348999999985321
Q ss_pred ----hhhhcCCCCCceeeEeecccCCCchhHHHHH-HHHH-----hcCCceEEEecccccc
Q 036359 375 ----NLRSWGPGLCDIAILVVDIMDGIKPQTIESL-DLLK-----ERSVDFIIALSKADKL 425 (657)
Q Consensus 375 ----~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~-----~~~vPiIvvlNKiDl~ 425 (657)
....+.+..+|.+|+|||++ .........+ ..+. ..+.|.|+|+||+|+.
T Consensus 223 ~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 223 KGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred hhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 11223345699999999997 1112222222 2222 2368999999999986
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.23 E-value=1.5e-11 Score=131.48 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+.+.||||||...... .....+|++|+|+|+..|...+. +.. ..+..|.|+|+||+|+.
T Consensus 165 ~~~~~iliDT~Gi~~~~~---~l~~~~d~vl~V~d~~~~~~~~~---i~~-~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSEF---AVADMVDMFVLLLPPAGGDELQG---IKR-GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CHH---HHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhhh---hHHhhCCEEEEEEcCCcchhHHH---hHH-HHHhcCCEEEEeeecCC
Confidence 445799999999742221 22467999999999987643222 211 12467999999999996
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.21 E-value=2.7e-11 Score=122.98 Aligned_cols=66 Identities=20% Similarity=0.116 Sum_probs=46.3
Q ss_pred CcEEEEeCCCCCcchhhh------hcCCCCCceeeEeecccCCCchhHHHHH-----HHHHhcCCceEEEeccccccc
Q 036359 360 PGLLVVDTPGHESFTNLR------SWGPGLCDIAILVVDIMDGIKPQTIESL-----DLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~------~~g~~~aD~aIlVVDa~~g~~~qt~e~l-----~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+.++||||||+..+.... ...+.. +++|+|+|+.....+.....+ ......++|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 569999999987664321 124455 899999999876665544321 223345799999999999863
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=6.7e-11 Score=129.33 Aligned_cols=123 Identities=24% Similarity=0.296 Sum_probs=67.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh-
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN- 375 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~- 375 (657)
+..|+|+|++|+|||||+++|++..+.....+|++.+...+ .... .....+... -....+++|||||+..+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t-~~~~---~i~~v~q~~--~~~~~Ltv~Dt~g~~~~~~~ 104 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKT-VQVE---QSKVLIKEG--GVQLLLTIVDTPGFGDAVDN 104 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----C-CEEE---EEECC--------CEEEEEEECC--------
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccc-eeee---eEEEEEecC--Ccccceeeeechhhhhhccc
Confidence 34589999999999999999998876322123332211000 0000 000000000 0012489999999876521
Q ss_pred ------h------------------hhcCCCC--CceeeEeeccc-CCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 376 ------L------------------RSWGPGL--CDIAILVVDIM-DGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ------~------------------~~~g~~~--aD~aIlVVDa~-~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+ ....+.. ++++||+++.+ +++.+.....+..+.. ++|+|+|+||+|++.
T Consensus 105 ~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 105 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLT 181 (418)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCcc
Confidence 1 0112223 44567777765 6888888777777764 899999999999963
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=1.7e-10 Score=123.62 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=57.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchh-hccccccccCCCcEEEEeCCCCCcchh-
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRT-EKLNADAKLKVPGLLVVDTPGHESFTN- 375 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~l~iIDTPGh~~f~~- 375 (657)
..|+|+|++|+|||||+|+|++..+.....++.|.......+.+...+-.. ..+.....+....+.||||||+..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 459999999999999999999876544444555544333333332211000 000000111123589999999987642
Q ss_pred ---h---hhcCCCCCceeeEeecccC
Q 036359 376 ---L---RSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 376 ---~---~~~g~~~aD~aIlVVDa~~ 395 (657)
+ ....++.+|++|+|||+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 2234578999999999986
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.08 E-value=2.1e-10 Score=120.14 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=60.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc-ccccccCcee-------eeccceeeecccccchhhccccccccCCCcEEEEeCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN-VQEGEAGGIT-------QQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTP 368 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~GiT-------~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTP 368 (657)
+..|+|+|++|+|||||+++|.+.. +... |+. ..+....+.+ .+... -....+++||||
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~---gi~~~g~~~~~t~~~~~~~~--------~~q~~--~~~~~ltv~Dt~ 84 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPER---VISGAAEKIERTVQIEASTV--------EIEER--GVKLRLTVVDTP 84 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC---------------------------CEE--------EEC-----CCEEEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCC---CcccCCcccCCcceEeeEEE--------EecCC--CcccCcchhhhh
Confidence 3558999999999999999998763 3221 111 1110000000 00000 001248999999
Q ss_pred CC-------Ccchhhhh-------cCC-------------CCCceeeEeeccc-CCCchhHHHHHHHHHhcCCceEEEec
Q 036359 369 GH-------ESFTNLRS-------WGP-------------GLCDIAILVVDIM-DGIKPQTIESLDLLKERSVDFIIALS 420 (657)
Q Consensus 369 Gh-------~~f~~~~~-------~g~-------------~~aD~aIlVVDa~-~g~~~qt~e~l~~l~~~~vPiIvvlN 420 (657)
|+ ..|..+.. .++ ..++++||+++.+ +++.+...+.+..+. .++|+++|+|
T Consensus 85 g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~ 163 (301)
T 2qnr_A 85 GYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIA 163 (301)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEEC
T ss_pred hhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEE
Confidence 98 44432221 111 1134466666654 468887766666554 3689999999
Q ss_pred cccccc
Q 036359 421 KADKLY 426 (657)
Q Consensus 421 KiDl~~ 426 (657)
|+|+..
T Consensus 164 K~Dl~~ 169 (301)
T 2qnr_A 164 KADTLT 169 (301)
T ss_dssp CGGGSC
T ss_pred eCCCCC
Confidence 999963
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.04 E-value=3.4e-10 Score=121.77 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=56.7
Q ss_pred eEEEEecCCCChhhhhhhhcCCcccccccCceeee--ccceeeecccccchhhccccccc----cCCCcEEEEeCCCCCc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQ--IGATYFPVENIQKRTEKLNADAK----LKVPGLLVVDTPGHES 372 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~--ig~~~~~~~~~~~~~~~~~~~~~----~~~~~l~iIDTPGh~~ 372 (657)
.|+|+|++|+|||||+++|++........++.|.. +|...++...+...+..+. ... +....+.||||||+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~-~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFA-KGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHC-BTTBCCCEECCEEEEEECCSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhc-ccccccccCCceEEEEECCCccc
Confidence 48999999999999999999765333333333333 3332222111111110000 000 1123599999999876
Q ss_pred ch-------hhhhcCCCCCceeeEeecccC
Q 036359 373 FT-------NLRSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 373 f~-------~~~~~g~~~aD~aIlVVDa~~ 395 (657)
+. +.....+..+|++|+|||+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 53 222335678999999999986
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.01 E-value=1.2e-09 Score=108.21 Aligned_cols=163 Identities=16% Similarity=0.099 Sum_probs=86.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeecc------------ceeeecccccchhhcc------cccccc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIG------------ATYFPVENIQKRTEKL------NADAKL 357 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig------------~~~~~~~~~~~~~~~~------~~~~~~ 357 (657)
+.+.|+|+|++|+|||||+++|+...+.......+..+++ ...+.+......+... ......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4567999999999999999999866433221111222222 1111111000000000 000111
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccccCcccCCCccHH
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLYGWKSCKNAPIK 437 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~ 437 (657)
..+.+.|+||+|..... ...-...+..++|+|+..+..... ......+.|+++|+||+|+.... ...
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~~~----~~~-- 183 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE----KHPGIMKTADLIVINKIDLADAV----GAD-- 183 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT----TCHHHHTTCSEEEEECGGGHHHH----TCC--
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh----hhhhHhhcCCEEEEeccccCchh----HHH--
Confidence 23469999999952211 112234567788888755432211 01122478999999999986300 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 438 KALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 438 ~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
+..+...+...+ ..++++++||+++.++.+.+..
T Consensus 184 -----------------~~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 184 -----------------IKKMENDAKRIN-------------PDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp -----------------HHHHHHHHHHHC-------------TTSEEEECCTTTCTTHHHHHHH
T ss_pred -----------------HHHHHHHHHHhC-------------CCCeEEEEEecCCCCHHHHHHH
Confidence 112222232211 2368999999999998876543
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.5e-10 Score=124.82 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=76.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc---
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF--- 373 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f--- 373 (657)
...|+|+|.+|+|||||+|+|++........++.|.+.....+.+.. ..+.|+||||...-
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~----------------~~i~l~D~pGl~~~a~~ 135 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG----------------AKIQMLDLPGIIDGAKD 135 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT----------------EEEEEEECGGGCCC---
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC----------------cEEEEEeCCCccCCchh
Confidence 34699999999999999999999886666667777655444444332 34899999996432
Q ss_pred ----hhhhhcCCCCCceeeEeecccCCCchhHHHHHH-HHHh-----cCCceEEEecccccc
Q 036359 374 ----TNLRSWGPGLCDIAILVVDIMDGIKPQTIESLD-LLKE-----RSVDFIIALSKADKL 425 (657)
Q Consensus 374 ----~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~-~l~~-----~~vPiIvvlNKiDl~ 425 (657)
.+.....+..||++|+|||+++++. ..+.+. .|.. ...|.++++||+|..
T Consensus 136 ~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 136 GRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp --CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1223345577999999999987432 122221 2222 245899999999973
No 200
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=118.10 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=66.6
Q ss_pred EEEEecCCCChhhhhhhhcCCcccccc----cCceeee-ccceeeecccccchhhccccccccCCCcEEEEeCCCCCcch
Q 036359 300 CCILGHVDAGKTRLLDCIRGTNVQEGE----AGGITQQ-IGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFT 374 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~~v~~~~----~~GiT~~-ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~ 374 (657)
|+|+|++|+|||||++.|.+..+.... ..+.+.. +++ .+.... + .+.++++|+||.....
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~-v~Q~~~-------------l-~~~ltv~D~~~~g~~~ 109 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTY-DLQESN-------------V-RLKLTIVSTVGFGDQI 109 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEE-EEEC---------------C-EEEEEEEEEECCCC-C
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEE-EeecCc-------------c-ccccchhhhhhhhhcc
Confidence 899999999999999999987542111 1111111 111 011000 0 1248999999975421
Q ss_pred h------------------hhhc--C-------CCCC--c-eeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccc
Q 036359 375 N------------------LRSW--G-------PGLC--D-IAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADK 424 (657)
Q Consensus 375 ~------------------~~~~--g-------~~~a--D-~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl 424 (657)
. .... + ...+ | +++||+|+.+++.+...+.+..+. .++|+|+|+||+|.
T Consensus 110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~ 188 (427)
T 2qag_B 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADA 188 (427)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhc
Confidence 1 0111 1 1122 2 577788999999988888888776 78999999999998
Q ss_pred cc
Q 036359 425 LY 426 (657)
Q Consensus 425 ~~ 426 (657)
+.
T Consensus 189 Lt 190 (427)
T 2qag_B 189 IS 190 (427)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 201
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.86 E-value=2.4e-10 Score=123.11 Aligned_cols=110 Identities=12% Similarity=0.133 Sum_probs=66.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc-------cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV-------QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGH 370 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v-------~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh 370 (657)
..|+++|.+|+|||||+|+|++... ..+..+|+|.+.... .+. ..+.|+||||.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~-----------------~~~~liDtPG~ 221 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--PLD-----------------EESSLYDTPGI 221 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--ESS-----------------SSCEEEECCCB
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--Eec-----------------CCeEEEeCCCc
Confidence 3499999999999999999997631 123334444333221 111 13899999997
Q ss_pred Ccchhh--------hh--cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 371 ESFTNL--------RS--WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 371 ~~f~~~--------~~--~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+...+ .. .-....+.+++++++...+....+..+..+...++|+++++||+|.+.
T Consensus 222 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 222 INHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp CCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred CcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 543211 11 113557888999988432111111113345556789999999999874
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.86 E-value=2.4e-09 Score=113.91 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=37.6
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
..+.+.||||||...-... ....+|++++|+|+..+...+ .+.. ....+|.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~~~---~i~~-~i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQ---GIKK-GIFELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC---------CCT-THHHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCcccHH---HHHH-HHhccccEEEEEchhcc
Confidence 4567999999997542221 236799999999986542111 1100 01235778889999974
No 203
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.80 E-value=2.4e-08 Score=102.94 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=70.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchh--
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTN-- 375 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~-- 375 (657)
++|+|+|++|+|||||++.|.+...... |.+.. ....++....+....-+.... .-...++++|+||......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~--G~i~~--~g~~i~~~~~~~~i~~v~q~~-~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK--ASSWN--REEKIPKTVEIKAIGHVIEEG-GVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCEEEESCC-----CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC--Ccccc--CCcccCcceeeeeeEEEeecC-CCcCCceEEechhhhhhcccH
Confidence 4699999999999999999998654321 11110 000000000000000000000 0113589999998643110
Q ss_pred ----------------h---hhc-------CCCCCceeeEeeccc-CCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 376 ----------------L---RSW-------GPGLCDIAILVVDIM-DGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 376 ----------------~---~~~-------g~~~aD~aIlVVDa~-~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
. ..+ .+..+.+++|++|.. +|+.+...+.+..+... +++|+|+||+|.+.
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 0 001 123367888999854 89999999999888887 99999999999974
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.79 E-value=1.1e-09 Score=122.28 Aligned_cols=66 Identities=20% Similarity=0.140 Sum_probs=43.0
Q ss_pred CCCcEEEEeCCCCCcch----hhhhcC--CCCCceeeEeecccCCCchhHHHHHHHHHhcCCce-EEEeccccccc
Q 036359 358 KVPGLLVVDTPGHESFT----NLRSWG--PGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDF-IIALSKADKLY 426 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~----~~~~~g--~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPi-IvvlNKiDl~~ 426 (657)
..+.++||||||+.... ...... +..+|.+|||||+..|.. ....+..+.. .+|+ +||+||+|...
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA 254 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc
Confidence 45679999999976421 111111 226899999999998753 3333333333 2785 99999999863
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.76 E-value=9.5e-10 Score=118.43 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=69.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCC------cccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT------NVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~------~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
..|+++|.+|+|||||+|+|++. ....+..+|+|.+.... .+. ..+.|+||||..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~-----------------~~~~liDtPG~~ 223 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI--PLE-----------------SGATLYDTPGII 223 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEE--ECS-----------------TTCEEEECCSCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEE--EeC-----------------CCeEEEeCCCcC
Confidence 34999999999999999999976 23333445555443221 111 138999999975
Q ss_pred cchhh--------hhcC--CCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 372 SFTNL--------RSWG--PGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 372 ~f~~~--------~~~g--~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
....+ .... ....|.+++++++...+....+..+.++...++|+++++||+|.+.
T Consensus 224 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 224 NHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp CCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred cHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 43211 1111 1567899999998532111111123445566789999999999874
No 206
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.62 E-value=1.5e-07 Score=99.57 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=50.3
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeeccc-------CCCchh----HHHHHHHHHh----cCCceEEEeccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIM-------DGIKPQ----TIESLDLLKE----RSVDFIIALSKADK 424 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~-------~g~~~q----t~e~l~~l~~----~~vPiIvvlNKiDl 424 (657)
..+.||||+|++.|..++..++..++++|+|+|.+ +.-... ....+..+.. .++|+|+++||+|+
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 34789999999999999999999999999999876 222222 2233333322 36899999999998
Q ss_pred cc
Q 036359 425 LY 426 (657)
Q Consensus 425 ~~ 426 (657)
..
T Consensus 247 ~~ 248 (327)
T 3ohm_A 247 LE 248 (327)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 207
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.60 E-value=1.2e-07 Score=99.10 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=65.7
Q ss_pred hhhhhhcCCccc-ccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcchhhhhcCCCCCceeeEe
Q 036359 312 RLLDCIRGTNVQ-EGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESFTNLRSWGPGLCDIAILV 390 (657)
Q Consensus 312 TLl~~L~~~~v~-~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlV 390 (657)
+|+.++....+. .. ...++|..+. .... . ...+.|||| |+.|..++..++..+|++|+|
T Consensus 32 sl~~~~~~~~f~~~~----~~pTiGd~~~-~~~~------------~-~~~~~iwD~--qer~~~l~~~~~~~ad~vilV 91 (301)
T 1u0l_A 32 ERILCKLRGKFRLQN----LKIYVGDRVE-YTPD------------E-TGSGVIENV--LHRKNLLTKPHVANVDQVILV 91 (301)
T ss_dssp CEEEEEECGGGTTTT----CCCCTTCEEE-EECC------------C-SSSEEEEEE--CCCSCEETTTTEESCCEEEEE
T ss_pred cEEEEEEcccccccC----CCCCCccEEE-EEEc------------C-CCeEEEEEE--ccccceeeccccccCCEEEEE
Confidence 688888877765 32 2334553322 1100 0 114899999 999999999999999999999
Q ss_pred ecccCCC-chhHHH-HHHHHHhcCCceEEEeccccccc
Q 036359 391 VDIMDGI-KPQTIE-SLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 391 VDa~~g~-~~qt~e-~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+|+++.. ...... ++..+...++|+|+|+||+|+..
T Consensus 92 ~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 92 VTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp ECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 9999854 333333 33445557899999999999963
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.59 E-value=2e-08 Score=108.66 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhc-cccccccCCCcEEEEeCCCCCcchh
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEK-LNADAKLKVPGLLVVDTPGHESFTN 375 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~~l~iIDTPGh~~f~~ 375 (657)
...|+|+|.+|+|||||+|+|++..+.....+++|.......+.+...+-.... ...........++||||||+..+..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 345999999999999999999998765555566665554444443321100000 0000000112489999999876543
Q ss_pred -------hhhcCCCCCceeeEeecccC
Q 036359 376 -------LRSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 376 -------~~~~g~~~aD~aIlVVDa~~ 395 (657)
....++..+|++|+|||+.+
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC--
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 34456678999999999975
No 209
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.56 E-value=1.1e-07 Score=100.86 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=50.7
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccC-------C--C--chhHHHHHHHHHh----cCCceEEEecccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD-------G--I--KPQTIESLDLLKE----RSVDFIIALSKAD 423 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~-------g--~--~~qt~e~l~~l~~----~~vPiIvvlNKiD 423 (657)
...+.||||+|++.|..++..++..++++|||+|+++ . . .......|..+.. .++|+|+++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 3458999999999999999999999999999999982 1 1 1222233332222 4689999999999
Q ss_pred cc
Q 036359 424 KL 425 (657)
Q Consensus 424 l~ 425 (657)
+.
T Consensus 240 L~ 241 (340)
T 4fid_A 240 LF 241 (340)
T ss_dssp HH
T ss_pred hh
Confidence 85
No 210
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.47 E-value=5e-07 Score=96.62 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=51.4
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCC-----------chhHHHHHHHHHh----cCCceEEEecccccc
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-----------KPQTIESLDLLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-----------~~qt~e~l~~l~~----~~vPiIvvlNKiDl~ 425 (657)
.+.||||+|+..|..++..++..++++|||||+++-- .......+..+.. .++|+|+|+||+|+.
T Consensus 194 ~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 194 HFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp EEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred eEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCch
Confidence 4899999999999999999999999999999998731 2223333333332 468999999999985
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.47 E-value=1.6e-07 Score=103.17 Aligned_cols=65 Identities=26% Similarity=0.166 Sum_probs=42.4
Q ss_pred CCCcEEEEeCCCCCcch----hhh--hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCC-c-eEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFT----NLR--SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSV-D-FIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~----~~~--~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~v-P-iIvvlNKiDl~ 425 (657)
..+.++||||||..... ... ...+..+|.++||+|+..|. .....+..+. .++ | ..+|+||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCc
Confidence 45679999999976431 111 12334689999999998863 2222222222 236 7 78999999985
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.41 E-value=1.3e-06 Score=95.24 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc--
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF-- 373 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f-- 373 (657)
..++|+|+|++|+|||||+|.|+|...... +.|+. +..... +. .-+... ...+.++++|+||....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~--GsI~~--~g~~~t----~~--~~v~q~--~~~~~ltv~D~~g~~~~~~ 135 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEE--GAAKT--GVVEVT----ME--RHPYKH--PNIPNVVFWDLPGIGSTNF 135 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTST--TSCCC--CC--------CC--CEEEEC--SSCTTEEEEECCCGGGSSC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccC--ceEEE--CCeecc----ee--EEeccc--cccCCeeehHhhcccchHH
Confidence 455799999999999999999998542211 11111 100000 00 000000 01235899999996321
Q ss_pred --h-hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 374 --T-NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 374 --~-~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
. .+...++...+..++ ++... .+.|-......+...+.|+++|+||.|++
T Consensus 136 ~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 1 111223333455444 66544 46777777777888899999999999985
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.39 E-value=1.8e-07 Score=101.35 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=61.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeeccccc--chhhccccccccCCCcEEEEeCCCCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQ--KRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~--~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
+..+|+|+|++|+|||||+|+|++..+ .....+++|.......+.+...+ ..+. +......-...+.||||||+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~-~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCE-AYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHH-HHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhh-hcccccccCcceEEEecccccc
Confidence 356799999999999999999999776 45555666665544444433211 0000 0000000012478999999643
Q ss_pred -------chhhhhcCCCCCceeeEeecccC
Q 036359 373 -------FTNLRSWGPGLCDIAILVVDIMD 395 (657)
Q Consensus 373 -------f~~~~~~g~~~aD~aIlVVDa~~ 395 (657)
+.+.....+..+|.+++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234445578999999999875
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.29 E-value=6.5e-07 Score=88.40 Aligned_cols=171 Identities=11% Similarity=0.099 Sum_probs=90.0
Q ss_pred CCCeEEEEecC-CCChhhhhhhhcCCc--c---------cccccCceeeeccce-eeecccccchhhccccc----cccC
Q 036359 296 RSPICCILGHV-DAGKTRLLDCIRGTN--V---------QEGEAGGITQQIGAT-YFPVENIQKRTEKLNAD----AKLK 358 (657)
Q Consensus 296 r~p~V~viG~v-dsGKSTLl~~L~~~~--v---------~~~~~~GiT~~ig~~-~~~~~~~~~~~~~~~~~----~~~~ 358 (657)
..|.++++|+- ..=..+|+.+|+... + .+|-.+||+.++... .|.+-.....+..-... ..-.
T Consensus 15 ~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~~ 94 (227)
T 3l82_B 15 NEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTSA 94 (227)
T ss_dssp CCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC---------------
T ss_pred CCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhhh
Confidence 35779999973 233557888887654 1 123345666655443 23222111111100000 0001
Q ss_pred CCcEEEEeCC------CCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHH----HHH----hcCCceEEEeccc-c
Q 036359 359 VPGLLVVDTP------GHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLD----LLK----ERSVDFIIALSKA-D 423 (657)
Q Consensus 359 ~~~l~iIDTP------Gh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~----~l~----~~~vPiIvvlNKi-D 423 (657)
...+.+.-+| |+..+..+|..|+..+|++|||||+++.......+-|. ++. ..++|++|+.||. |
T Consensus 95 ~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqD 174 (227)
T 3l82_B 95 VNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQG 174 (227)
T ss_dssp ----------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESST
T ss_pred hhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcC
Confidence 1235666666 78888999999999999999999999853333555442 222 1478999999996 6
Q ss_pred cccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 424 KLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 424 l~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
+.. +-- ..+|...| |+.. ....+.|.++||+||++|.+-+.+.
T Consensus 175 lp~-------Ams------------------~~EI~e~L---~L~~--------l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 175 DVK-------RMP------------------CFYLAHEL---HLNL--------LNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp TSC-------BCC------------------HHHHHHHT---TGGG--------GCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred ccC-------CCC------------------HHHHHHHc---CCcC--------CCCCEEEEEeECCCCcCHHHHHHHH
Confidence 642 210 22343333 3332 1246889999999999999977663
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.29 E-value=1e-06 Score=94.51 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=44.3
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCC-----------chhHHHHHHHHHh----cCCceEEEeccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGI-----------KPQTIESLDLLKE----RSVDFIIALSKADK 424 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-----------~~qt~e~l~~l~~----~~vPiIvvlNKiDl 424 (657)
..+.||||+|+..|...+..++..++++|||||+++-- .......+..+.. .++|+|+|+||+|+
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL 280 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence 35899999999999999999999999999999998721 1222333333322 36899999999998
Q ss_pred c
Q 036359 425 L 425 (657)
Q Consensus 425 ~ 425 (657)
.
T Consensus 281 ~ 281 (362)
T 1zcb_A 281 L 281 (362)
T ss_dssp H
T ss_pred h
Confidence 6
No 216
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.29 E-value=1e-06 Score=86.96 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=63.9
Q ss_pred ccccceeEEEEEeecCceeEEEEEEEeeeecCCCEEE-eccccchhhccCCCCCceeEEeeeeeccccccccc---ccEE
Q 036359 502 RNEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIV-EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKI 577 (657)
Q Consensus 502 ~~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~-gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i 577 (657)
..||+++|.++|. |.|+|+.|+|.+|+|++||.|+ .|.. ...+|++|++|+..+..|. .|.|
T Consensus 4 ~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~------------~~~~V~~I~~~~~~~~~A~aGd~V~l 69 (204)
T 3e1y_E 4 GSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK------------HNVEVLGILSDDVETDTVAPGENLKI 69 (204)
T ss_dssp ---CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT------------EEEEEEEECSSSSCBSEECTTSEEEE
T ss_pred CCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC------------CEEEEEEEEECCEEeEEECCCCEEEE
Confidence 4689999999987 8999999999999999999998 5542 5689999999999998773 4778
Q ss_pred EecCCCC--CCCCCeEEE
Q 036359 578 TAQGLQD--AIAGTSLYV 593 (657)
Q Consensus 578 ~~~gl~~--~~aG~~l~v 593 (657)
.+.|++. +..|+.|+-
T Consensus 70 ~L~gi~~~di~rG~vl~~ 87 (204)
T 3e1y_E 70 RLKGIEEEEILPGFILCD 87 (204)
T ss_dssp EEEESSSSCCCTTCEEBC
T ss_pred EEcCCCHHHCccceEEEC
Confidence 8898864 678888764
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.26 E-value=9.2e-07 Score=96.97 Aligned_cols=66 Identities=23% Similarity=0.080 Sum_probs=40.2
Q ss_pred CCcEEEEeCCCCCcchhh----h--hcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 359 VPGLLVVDTPGHESFTNL----R--SWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~----~--~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+.++||||||....... . ...+..+|.++||+|+..|. ........+...--+..||+||+|...
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 367999999995432211 1 11223479999999999852 223333333322233568999999853
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.22 E-value=4.9e-07 Score=102.63 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=58.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCcee----eeccceeeecccccchhhccccccccCCCcEEEEeCCCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGIT----QQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHE 371 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT----~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~ 371 (657)
+.++|+|+|.+|+|||||+|+|++....- ..+|.| ..+-.+..++.. .....++||||||..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~-------------~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPK-------------KPGHILVLLDTEGLG 102 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSS-------------STTCEEEEEEECCBC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeeccccc-------------CCCceEEEecCCCcC
Confidence 44568999999999999999999876321 222222 222111111110 122359999999976
Q ss_pred cchh------hhhcCCCCCceeeEeecccCCCchhHHHHHHHH
Q 036359 372 SFTN------LRSWGPGLCDIAILVVDIMDGIKPQTIESLDLL 408 (657)
Q Consensus 372 ~f~~------~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l 408 (657)
+... .....+...-..++|||+..++..+....+.++
T Consensus 103 ~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 103 DVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp CGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHH
T ss_pred cccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHH
Confidence 5432 011011111133788999998888887766543
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.15 E-value=1.7e-06 Score=90.26 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=43.1
Q ss_pred CCCcEEEEeCCCCCc--chh-hhh-----cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 358 KVPGLLVVDTPGHES--FTN-LRS-----WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~--f~~-~~~-----~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
..+.+.||||||... ... ++. ..+..+|.+|||+|+..| .++...+..+.. .+| ..+|+||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 456799999999766 321 110 123468999999999864 334444443333 477 67899999975
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.08 E-value=2e-06 Score=89.02 Aligned_cols=58 Identities=28% Similarity=0.352 Sum_probs=35.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc-ccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN-VQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHES 372 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~-v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~ 372 (657)
+...|+|+|.+|+|||||+|+|++.. ...+..+|+|.+.....+ ...+.||||||...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-------------------GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-------------------TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-------------------CCCEEEEECcCcCC
Confidence 45569999999999999999999876 344555666765532221 12489999999753
No 221
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.08 E-value=8.8e-06 Score=84.96 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCcchhhhhcCCCCCceeeEeecccCCC-chhHHH-HHHHHHhcCCceEEEecccccccCcccCCCccHHHHHHhhhHHH
Q 036359 370 HESFTNLRSWGPGLCDIAILVVDIMDGI-KPQTIE-SLDLLKERSVDFIIALSKADKLYGWKSCKNAPIKKALEQQSKDV 447 (657)
Q Consensus 370 h~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~qt~e-~l~~l~~~~vPiIvvlNKiDl~~~w~~~~~~~~~~~L~~q~~~~ 447 (657)
|+.|..+...++..+|++|+|+|++++. ....++ +|..+...++|+|+|+||+|+.. ... +.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~------~~~----v~------ 129 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN------EEE----KK------ 129 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC------HHH----HH------
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC------ccc----cH------
Confidence 6677777777889999999999999853 444333 44556668999999999999963 000 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhccc
Q 036359 448 EDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAFR 502 (657)
Q Consensus 448 ~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~~ 502 (657)
....+...+... .++++++||+++.++.+++...
T Consensus 130 ------~~~~~~~~~~~~---------------g~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 130 ------ELERWISIYRDA---------------GYDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp ------HHHHHHHHHHHT---------------TCEEEECCTTTCTTHHHHHHHT
T ss_pred ------HHHHHHHHHHHC---------------CCeEEEEECCCCCCHHHHHhhc
Confidence 011222222222 2578999999999988876553
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.06 E-value=2.1e-06 Score=94.00 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCCcc------hhhhh--cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 359 VPGLLVVDTPGHESF------TNLRS--WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f------~~~~~--~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.+.++||||||...| ...+. .....+|.++||+|+..|. .....+..+...--+..|++||+|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEeccccc
Confidence 567999999996441 11111 1122468999999999852 22333333333324578899999985
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.01 E-value=8e-06 Score=93.39 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=23.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCccc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQ 323 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~ 323 (657)
+.-|.|+|+|++|||||||++.|.|...+
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 45567999999999999999999987433
No 224
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.92 E-value=9.2e-06 Score=89.08 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=41.2
Q ss_pred CCCcEEEEeCCCCCcchhhhh------cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRS------WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~------~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
..+.++||||||...+..... ..+..+|.++||+|+..|. .....+..+. .++| .-|++||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCCCC
Confidence 356799999999765422111 1244789999999998762 2333332222 2366 35799999974
No 225
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.91 E-value=1e-05 Score=87.75 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=50.1
Q ss_pred cEEEEeCCCCCcchhhhhcCCCCCceeeEeecccC-------CCchhHH----HHHHHHHh----cCCceEEEecccccc
Q 036359 361 GLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD-------GIKPQTI----ESLDLLKE----RSVDFIIALSKADKL 425 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~-------g~~~qt~----e~l~~l~~----~~vPiIvvlNKiDl~ 425 (657)
.+.||||+|++.|..++..++..++++|||+|+++ .....++ ..+..+.. .++|+|+|+||+|+.
T Consensus 218 ~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 218 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp EEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred cceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhh
Confidence 48999999999999999999999999999999987 1112222 23333322 368999999999985
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.89 E-value=4.8e-06 Score=85.29 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=35.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc-cccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV-QEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF 373 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v-~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f 373 (657)
..|+|+|.+|+|||||+|+|++... ..+...|+|.+.....+ ...+.||||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-------------------~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-------------------ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-------------------TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-------------------CCCEEEEECCCcccC
Confidence 4699999999999999999998764 33444555554321111 124899999997643
No 227
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.88 E-value=1.4e-05 Score=82.55 Aligned_cols=171 Identities=12% Similarity=0.097 Sum_probs=92.8
Q ss_pred CCCCeEEEEecCC-CChhhhhhhhcCCc-c------c----ccccCceeeeccce-eeecccccchhhcccccc----cc
Q 036359 295 LRSPICCILGHVD-AGKTRLLDCIRGTN-V------Q----EGEAGGITQQIGAT-YFPVENIQKRTEKLNADA----KL 357 (657)
Q Consensus 295 ~r~p~V~viG~vd-sGKSTLl~~L~~~~-v------~----~~~~~GiT~~ig~~-~~~~~~~~~~~~~~~~~~----~~ 357 (657)
.+.|.+++.|+-= .=..+|+.+|+... + . .|-.+|++.++... .|.+-.....+..-.... .-
T Consensus 99 ~~~pr~amFGpGlE~~~~~lv~~lm~~~e~~p~~g~~~r~~~giGsGv~~~~~~~~~fni~tLYs~tr~ER~r~~~e~~~ 178 (312)
T 3l2o_B 99 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 178 (312)
T ss_dssp CCCCEEEEECTHHHHSSSCHHHHHTTCGGGCCEECCSTTTCSSSCCCEEEEETTTEEEEEEECSCCCC------------
T ss_pred CCCceEEEECCCcccccHHHHHHHHcCCCccccccccCCCcCccccceEEEECCceeEEEEEeccccHHHHhhhhhhhhh
Confidence 4668899999721 11347787777653 1 1 23344666655543 233222111111000000 00
Q ss_pred CCCcEEEEeCC------CCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHH----HHHH----hcCCceEEEecc-c
Q 036359 358 KVPGLLVVDTP------GHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESL----DLLK----ERSVDFIIALSK-A 422 (657)
Q Consensus 358 ~~~~l~iIDTP------Gh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l----~~l~----~~~vPiIvvlNK-i 422 (657)
....+...-+| |+..+..++..++..+|++|||||+++..-..+.+.| .++. ..++|++|+.|| .
T Consensus 179 ~~~k~f~~~~~~~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQ 258 (312)
T 3l2o_B 179 AVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQ 258 (312)
T ss_dssp ------------------CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESS
T ss_pred hhhhhccccCCCCcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcc
Confidence 01123333343 7888999999999999999999999885322244322 2231 258999999997 5
Q ss_pred ccccCcccCCCccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhhccccCcceeEEeccchhhhhhhhhhcc
Q 036359 423 DKLYGWKSCKNAPIKKALEQQSKDVEDEFKMRLRNIITQFKEQGLNTELYYKNKEMGKTFSIVPTSAIRHKTMVKKLAF 501 (657)
Q Consensus 423 Dl~~~w~~~~~~~~~~~L~~q~~~~~~~~~~~~~~ii~~L~~~G~~~~~~~~~~~~~~~v~iVpvSA~t~~~L~e~l~~ 501 (657)
|+.. +-- ..+|...| |+.. ....+.|.++||+||++|.+-+.+
T Consensus 259 Dlp~-------Ams------------------~~EI~e~L---~L~~--------l~r~W~Iq~csA~tGeGL~EGldW 301 (312)
T 3l2o_B 259 GDVK-------RMP------------------CFYLAHEL---HLNL--------LNHPWLVQDTEAETLTGFLNGIEW 301 (312)
T ss_dssp TTSC-------BCC------------------HHHHHHHT---TGGG--------GCSCEEEEEEETTTCTTHHHHHHH
T ss_pred cccC-------CCC------------------HHHHHHHc---CCcc--------CCCcEEEEecccCCCcCHHHHHHH
Confidence 7742 210 12333333 3332 124678999999999999987765
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.79 E-value=2.5e-05 Score=80.76 Aligned_cols=61 Identities=23% Similarity=0.168 Sum_probs=40.5
Q ss_pred EEeCCCCCc-chhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 364 VVDTPGHES-FTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 364 iIDTPGh~~-f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
|=..|||.. +...+...+..+|++|+|||+.++...... .+..+. .+.|+|+|+||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-~l~~~l-~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-MIEDIL-KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-HHHHHC-SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-HHHHHH-CCCCEEEEEECcccCC
Confidence 335699974 445666788999999999999986654322 222222 5789999999999973
No 229
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.71 E-value=2.3e-05 Score=83.74 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=50.3
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccC-------CCchhHHH----HHHHHHh----cCCceEEEeccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMD-------GIKPQTIE----SLDLLKE----RSVDFIIALSKADK 424 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~-------g~~~qt~e----~l~~l~~----~~vPiIvvlNKiDl 424 (657)
..+.||||+|++.|..++..++..++++|||+|++. .....+++ .+..+.. .++|+|+|+||+|+
T Consensus 183 v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL 262 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262 (354)
T ss_dssp -EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHH
T ss_pred eeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcch
Confidence 358999999999999999999999999999999971 11122332 3322322 36899999999998
Q ss_pred cc
Q 036359 425 LY 426 (657)
Q Consensus 425 ~~ 426 (657)
..
T Consensus 263 ~~ 264 (354)
T 2xtz_A 263 FE 264 (354)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.70 E-value=2.1e-05 Score=83.14 Aligned_cols=126 Identities=18% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCCcccccccCcee-------------------eeccceeeecccccchhhccccc-
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGIT-------------------QQIGATYFPVENIQKRTEKLNAD- 354 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT-------------------~~ig~~~~~~~~~~~~~~~~~~~- 354 (657)
.++-+|+|+|++|+|||||++.|.+.....+ +-+. ..+|..++...........+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3456799999999999999999986432211 1011 01111111100000000000000
Q ss_pred --cccCCCcEEEEeCCCCCcchhh----hh--cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 355 --AKLKVPGLLVVDTPGHESFTNL----RS--WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 355 --~~~~~~~l~iIDTPGh~~f~~~----~~--~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
.....+.+.+|||+|....... .. ...-.+|-.++|+|+..+. +..+.+..+... ++ -++++||+|-.
T Consensus 205 ~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~-~~it~iilTKlD~~ 281 (328)
T 3e70_C 205 QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEA-VKIDGIILTKLDAD 281 (328)
T ss_dssp HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHH-SCCCEEEEECGGGC
T ss_pred HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHh-cCCCEEEEeCcCCc
Confidence 0012345889999996443211 11 0112478899999988762 333333333321 23 47788999974
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.67 E-value=3.1e-05 Score=85.86 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.-+|+|+|.+|||||||+++|.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 347999999999999999999754
No 232
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.65 E-value=3.2e-05 Score=84.44 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=39.5
Q ss_pred CCCcEEEEeCCCCCcchh-hhh-----cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESFTN-LRS-----WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~-~~~-----~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
..+.+.||||||...... ++. ..+..+|.+|||+|+..+ ......+..+.. .++ ..|++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 456799999999654321 111 112358899999999865 223333332222 355 56789999974
No 233
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.65 E-value=0.00031 Score=62.40 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=61.1
Q ss_pred cccceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEe
Q 036359 503 NEVQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITA 579 (657)
Q Consensus 503 ~~~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~ 579 (657)
.|..+.|+.++..-+ |+++.|.|.+|+|++|+.| |... ....|+||+++++.+..|. +|.|++
T Consensus 33 ~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V--Pg~~-----------~vg~VkSIE~~~e~v~eA~~GdnVai~I 98 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV--KGPS-----------GIGGIVRIERNREKVEFAIAGDRIGISI 98 (116)
T ss_dssp CSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE--ECSS-----------CEEEEEEEEETTEEESEEETTCEEEEEE
T ss_pred CcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc--CCCc-----------eEEEEEEEEECCcCcCCcCCCCEEEEEE
Confidence 355666666444434 9999999999999999987 5320 2467999999999999884 588888
Q ss_pred cCCC-CCCCCCeEEEc
Q 036359 580 QGLQ-DAIAGTSLYVV 594 (657)
Q Consensus 580 ~gl~-~~~aG~~l~v~ 594 (657)
.|.. ++..|+.||+.
T Consensus 99 kg~~~~I~~GdVLyv~ 114 (116)
T 1xe1_A 99 EGKIGKVKKGDVLEIY 114 (116)
T ss_dssp ESCCCCCCTTCEEEEE
T ss_pred ECCccccCCCcEEEEe
Confidence 8876 88999999975
No 234
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=97.59 E-value=1e-05 Score=74.10 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=33.3
Q ss_pred hhcHHHHhhhhccc---cccEEEEcCccchHHHHHHhcccC
Q 036359 619 SEGMKSVMSKVDKT---CEGVCMQASTWGSLEALLAFSYPQ 656 (657)
Q Consensus 619 ~~~~~~~~~~~~~~---~~~v~vkad~~gslea~~~~l~~~ 656 (657)
..+|+++|+++..+ .+||||||||+||||||+++|.+.
T Consensus 24 ~~~Le~l~~~i~~~~~k~l~vIiKaDv~GSlEAl~~~L~~l 64 (135)
T 1z9b_A 24 RVSLDDLFEQIKQGEMKELNLIVKADVQGSVEALVAALQKI 64 (135)
T ss_dssp CCSCCCCCCCCCCCSSCEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHhccCcccCCEEEEeCCcchHHHHHHHHHhc
Confidence 56789999999874 579999999999999999999863
No 235
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.55 E-value=5.2e-05 Score=77.51 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCCCcch-hhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 368 PGHESFT-NLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 368 PGh~~f~-~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
|||.... ..+...+..+|++|+|+|+.++....... +.++ +.|+|+|+||+|++.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VDFS---RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SCCT---TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HHhc---CCCcEEEEECccCCC
Confidence 9997553 45566788999999999999876543211 1112 899999999999974
No 236
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.55 E-value=0.00012 Score=77.11 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCCcEEEEeCCCCCcchh-hh---------h--cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEeccccc
Q 036359 358 KVPGLLVVDTPGHESFTN-LR---------S--WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADK 424 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~-~~---------~--~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl 424 (657)
..+.++||||||...... ++ . .....+|.++||+++..+ ..+...+..+.. .++ .=|++||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEEEEeCCCC
Confidence 356799999999755321 10 0 112458899999999864 333333332221 244 3478999997
Q ss_pred c
Q 036359 425 L 425 (657)
Q Consensus 425 ~ 425 (657)
.
T Consensus 267 ~ 267 (320)
T 1zu4_A 267 T 267 (320)
T ss_dssp C
T ss_pred C
Confidence 4
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.55 E-value=0.00011 Score=76.93 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.+|+|+|++|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 446899999999999999999753
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.48 E-value=7.6e-05 Score=72.05 Aligned_cols=63 Identities=17% Similarity=0.074 Sum_probs=47.9
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc-----CCceEEEeccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER-----SVDFIIALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~-----~vPiIvvlNKiDl 424 (657)
.+.++|||||+... ......+..+|.+|+|+..+... ..+...+..+... ++++.+|+|++|.
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 36799999998753 33344566799999999988766 6677777777655 3678999999995
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.46 E-value=9.7e-05 Score=76.89 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=62.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCccc-ccc-cCceeeec---cce-eee-cccccch-------hhcccc-ccccCCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQ-EGE-AGGITQQI---GAT-YFP-VENIQKR-------TEKLNA-DAKLKVP 360 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~-~~~-~~GiT~~i---g~~-~~~-~~~~~~~-------~~~~~~-~~~~~~~ 360 (657)
+..+|+|+|+.|+||||++..|.+.... .|. ..-++.+. +.. .+. +....+. ...+.. -..+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3457999999999999999998754321 221 00011110 000 000 0000000 000000 0012456
Q ss_pred cEEEEeCCCCCcchhh----hhcCC--CCCceeeEeecccCCCchhHHHHHHHHHhcC-Cc-eEEEecccccc
Q 036359 361 GLLVVDTPGHESFTNL----RSWGP--GLCDIAILVVDIMDGIKPQTIESLDLLKERS-VD-FIIALSKADKL 425 (657)
Q Consensus 361 ~l~iIDTPGh~~f~~~----~~~g~--~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~-vP-iIvvlNKiDl~ 425 (657)
.++||||||....... ....+ ..+|.+++|+|++++. +... ..+..+. ++ .-+++||+|..
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~--~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMK--HIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHH--HHTTTTSSSCCCEEEEECTTTC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHH--HHHHHHhcCCCCEEEEeCCCcc
Confidence 7999999997654321 11122 2467889999988742 2222 2222222 23 34667999975
No 240
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.35 E-value=0.0001 Score=81.00 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.+..+|+|+|..++|||||+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45567999999999999999999864
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.29 E-value=0.00031 Score=73.35 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=37.9
Q ss_pred CcEEEEeCCCCCcchh-h----------hh-cCCCCCceeeEeecccCCCchhHHHHHHHHH-hcCCceEEEecccccc
Q 036359 360 PGLLVVDTPGHESFTN-L----------RS-WGPGLCDIAILVVDIMDGIKPQTIESLDLLK-ERSVDFIIALSKADKL 425 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~-~----------~~-~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-~~~vPiIvvlNKiDl~ 425 (657)
+.+.++||+|...... . .. .....++.++|++|+..+.. ....+..+. ..++ .+|++||.|..
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh~d~~ 260 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTKLDGT 260 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEECTTSS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEECCccc
Confidence 4578999999643221 1 01 12345788899999887532 333343333 3354 56788999875
No 242
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.23 E-value=0.00016 Score=77.59 Aligned_cols=62 Identities=19% Similarity=0.133 Sum_probs=38.5
Q ss_pred EEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 362 l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+..+++| +++|..+....+..++++|+|||+.+..... ...+... ..+.|+|+|+||+|++.
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-~~~l~~~-l~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSF-IPGLPRF-AADNPILLVGNKADLLP 112 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-CSSHHHH-CTTSCEEEEEECGGGSC
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCch-hhHHHHH-hCCCCEEEEEEChhcCC
Confidence 4555665 7789888777778899999999999843211 1111111 12789999999999974
No 243
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.22 E-value=0.00018 Score=74.76 Aligned_cols=65 Identities=25% Similarity=0.258 Sum_probs=38.5
Q ss_pred CCCcEEEEeCCCCCcc--hhhhh----cCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 358 KVPGLLVVDTPGHESF--TNLRS----WGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f--~~~~~----~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
..+.+.||||||.... ..+.. .....+|.++||+|+..+ ..+...+..+.. .++ .-+++||+|..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 3567999999986533 21111 011248889999998753 333333332222 245 45789999974
No 244
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.02 E-value=0.00028 Score=75.64 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=38.0
Q ss_pred EEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccccc
Q 036359 362 LLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 362 l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
+..++++ .++|..++......+|++|+|||+.+.. ......|..+ ..++|+|+|+||+|+..
T Consensus 49 ~~~v~~~-~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~-~~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 49 IQDVSLT-DDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRF-VGNNKVLLVGNKADLIP 110 (368)
T ss_dssp --------CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHH-SSSSCEEEEEECGGGSC
T ss_pred cccCCCC-HHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHH-hCCCcEEEEEEChhcCC
Confidence 3344443 4678888777778889999999998721 1000111111 13789999999999974
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.89 E-value=0.0019 Score=67.54 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=35.6
Q ss_pred cCCCCCceeeEeecccCCCchhH-H-HHHHHHHhcCCceEEEeccccccc
Q 036359 379 WGPGLCDIAILVVDIMDGIKPQT-I-ESLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 379 ~g~~~aD~aIlVVDa~~g~~~qt-~-e~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
..+.++|.+|+|+|+..+..... + ..|..+...++|.|+|+||+|+..
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE 131 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCc
Confidence 35688999999999997543322 2 233344567999999999999974
No 246
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.81 E-value=0.00069 Score=66.39 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=46.0
Q ss_pred CCcEEEEeCCCC-CcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc-CCceEEEecccccc
Q 036359 359 VPGLLVVDTPGH-ESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER-SVDFIIALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~-~vPiIvvlNKiDl~ 425 (657)
.+.++|||||+. ... .....+..+|.+|+|+..+..-...+...+..+... +.++.+++|++|..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 467999999987 433 223345679999999987654444455556666653 77889999999863
No 247
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.75 E-value=0.00038 Score=68.98 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=45.3
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEeccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADK 424 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl 424 (657)
..+.++|||||+.... .....+..+|.+|+|+..+..-...+...+.++..++++ +.+++|+++.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4567999999976433 333445789999999987653333344445566677776 7799999984
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.75 E-value=0.0021 Score=67.00 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=38.2
Q ss_pred CcEEEEeCCCCCcchhh-----------hhc-CCCCCceeeEeecccCCCchhHHHHHHHHH-hcCCceEEEecccccc
Q 036359 360 PGLLVVDTPGHESFTNL-----------RSW-GPGLCDIAILVVDIMDGIKPQTIESLDLLK-ERSVDFIIALSKADKL 425 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~-----------~~~-g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-~~~vPiIvvlNKiDl~ 425 (657)
..+.++||.|...+... ..+ .+..++-++||+|++.|..+... +..+. ..++. +++++|+|-.
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~t-~iiiThlD~~ 259 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGIT-GLILTKLDGS 259 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCC-EEEEECCSSC
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCCC-EEEEeCCCCC
Confidence 34789999997554211 111 12446777999998877655432 33333 34554 5667899864
No 249
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.74 E-value=0.00047 Score=72.09 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||+|.|.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34579999999999999999999754
No 250
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.63 E-value=0.0021 Score=66.38 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=42.7
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHh----cCCceE-EEeccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKE----RSVDFI-IALSKADK 424 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~----~~vPiI-vvlNKiDl 424 (657)
..+.++|||||+...... ....+..+|.+|+|+..+..-...+...+..+.. .+++++ ||+|+++.
T Consensus 155 ~~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 347799999998644322 2235678999999998664222334444555554 356654 89999984
No 251
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.58 E-value=0.0032 Score=67.15 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=38.0
Q ss_pred CcEEEEeCCCCCcchhhh-----------hc-CCCCCceeeEeecccCCCchhHHHHHHHHH-hcCCceEEEecccccc
Q 036359 360 PGLLVVDTPGHESFTNLR-----------SW-GPGLCDIAILVVDIMDGIKPQTIESLDLLK-ERSVDFIIALSKADKL 425 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~-----------~~-g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~-~~~vPiIvvlNKiDl~ 425 (657)
..+.++||.|...+.... .+ .+..++-+|||+|++.|..+... +..+. ..++. +|+++|+|-.
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~t-~iiiThlD~~ 316 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGIT-GLILTKLDGS 316 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCC-EEEEESCTTC
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCCe-EEEEecCccc
Confidence 347899999976542111 11 23457777999998877654432 33333 34544 5667999864
No 252
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.40 E-value=0.0043 Score=63.62 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=43.2
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHh------cCCce-EEEecccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKE------RSVDF-IIALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~------~~vPi-IvvlNKiDl~ 425 (657)
.+.++|||||+...... ...+..+|.+|+|+..+......+...+..+.. .++++ -+|+|++|..
T Consensus 154 ~yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 46799999998654422 223346999999999887554444444444433 36774 4899999963
No 253
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.36 E-value=0.0027 Score=66.01 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
+..-+++|+|++|+|||||+|.|.
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999998
No 254
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.31 E-value=0.0011 Score=70.78 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNV 322 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v 322 (657)
..-+++|+|++|+|||||+|.|.+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 445799999999999999999998643
No 255
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.17 E-value=0.011 Score=62.90 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCCCCceeeEeecccCCCchhHHH-HHHHHHhcCCceEEEeccccccc
Q 036359 380 GPGLCDIAILVVDIMDGIKPQTIE-SLDLLKERSVDFIIALSKADKLY 426 (657)
Q Consensus 380 g~~~aD~aIlVVDa~~g~~~qt~e-~l~~l~~~~vPiIvvlNKiDl~~ 426 (657)
.+.++|.+++|++....+....++ .|..+...++|+|+|+||+|++.
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 357899998775433222222222 33345567999999999999974
No 256
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.01 E-value=0.0069 Score=57.88 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.++|+|+|++|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 467999999999999999999864
No 257
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.96 E-value=0.0048 Score=64.00 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 45679999999999999999999865
No 258
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.93 E-value=0.0059 Score=66.90 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
+..+|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34458899999999999999765
No 259
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.72 E-value=0.0044 Score=64.77 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+-|+++|+|+.|+|||||++.|.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 34679999999999999999999653
No 260
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.61 E-value=0.0056 Score=57.83 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
...++|+|++|+|||||+.+|.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999998654
No 261
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.60 E-value=0.014 Score=58.73 Aligned_cols=67 Identities=9% Similarity=0.019 Sum_probs=48.3
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceE-EEeccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFI-IALSKADK 424 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiI-vvlNKiDl 424 (657)
..|.++|||||+...........+..+|.+|+|+.........+...+..+...++|++ +|+|++|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 45789999999865432221112225899999998877665666777777888899977 99999985
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.94 E-value=0.0089 Score=56.76 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+..+|+|+|++|||||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999864
No 263
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.89 E-value=0.0079 Score=58.40 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.-+++|+|++|||||||++.|.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346999999999999999999864
No 264
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.82 E-value=0.0064 Score=66.99 Aligned_cols=108 Identities=9% Similarity=0.011 Sum_probs=56.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCcccccccCceeeeccceeeecccccchhhccccccccCCCcEEEEeCCCCCcc--
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTNVQEGEAGGITQQIGATYFPVENIQKRTEKLNADAKLKVPGLLVVDTPGHESF-- 373 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~v~~~~~~GiT~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~iIDTPGh~~f-- 373 (657)
++.+|+++|.+|+||||+...|...... .+ +....+..+..+.... .. .....|+|+.|...|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~----~~----~~t~~~~~d~~r~~~~---g~----~~~~~ifd~~g~~~~r~ 102 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF----IG----VPTREFNVGQYRRDMV---KT----YKSFEFFLPDNEEGLKI 102 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH----TT----CCEEEEEHHHHHHHHH---CS----CCCGGGGCTTCHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc----cC----CCceEEecchhhhhhc---cC----CCcccccCCCCHHHHHH
Confidence 3456999999999999999998743211 01 1111222221111100 00 011346788886333
Q ss_pred hhhh--------hcCCCCCceeeEeecccCCCchhHHHHH-HHHHhcCCceEEEe
Q 036359 374 TNLR--------SWGPGLCDIAILVVDIMDGIKPQTIESL-DLLKERSVDFIIAL 419 (657)
Q Consensus 374 ~~~~--------~~g~~~aD~aIlVVDa~~g~~~qt~e~l-~~l~~~~vPiIvvl 419 (657)
...+ ..++..+++.++|+|+++. ....+..| ..++..++++|++-
T Consensus 103 re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l~ 156 (469)
T 1bif_A 103 RKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFVE 156 (469)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEEE
Confidence 2111 2233346788999999875 33334433 45566676655443
No 265
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.78 E-value=0.0088 Score=57.05 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhhhhhhhcCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+|+|+|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 266
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.71 E-value=0.0094 Score=57.13 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..+|+|+|++|||||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 357999999999999999999864
No 267
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.71 E-value=0.024 Score=57.81 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=49.4
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceE-EEecccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFI-IALSKADKL 425 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiI-vvlNKiDl~ 425 (657)
+.++|||||+....... ...+..+|.+|+|+.............+..+...+++++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~d~-~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTDA-QLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCSHH-HHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHHHH-HHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 56999999986543322 123356899999999887777777778888888899976 899999964
No 268
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=94.67 E-value=0.047 Score=47.11 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=61.0
Q ss_pred ceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCC-CCCceeEEeeeeecccccccc---cccEEEecC
Q 036359 506 QCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTP-HPMKELRVKGAYQHHKEIKAA---QGIKITAQG 581 (657)
Q Consensus 506 ~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p-~~~~e~rVksi~~~~~~v~~a---~gv~i~~~g 581 (657)
.+.|..+|.++..|+|+.++|.+|.|+.+..+. ++.. .-..+-.+.|+..+...|+.. .-++|.+.+
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vR---------v~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~ 78 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVR---------LIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKN 78 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEE---------EECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTT
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEE---------EEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcC
Confidence 467889999999999999999999999998876 0000 011234566776666666654 347888899
Q ss_pred CCCCCCCCeEEEcCC
Q 036359 582 LQDAIAGTSLYVVGP 596 (657)
Q Consensus 582 l~~~~aG~~l~v~~~ 596 (657)
.+++..||.+..+.-
T Consensus 79 ~~dik~GD~Ie~ye~ 93 (99)
T 1d1n_A 79 FNDIKEGDVIEAYVM 93 (99)
T ss_dssp CSSCSSCSEEEEECC
T ss_pred cCCCCCCCEEEEEEE
Confidence 999999999988754
No 269
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.59 E-value=0.013 Score=58.58 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34569999999999999999999864
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.59 E-value=0.0096 Score=57.60 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.0
Q ss_pred eEEEEecCCCChhhhhhhhcCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+|+|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 271
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.55 E-value=0.014 Score=57.91 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999864
No 272
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.55 E-value=0.011 Score=56.37 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+++|+|++|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998653
No 273
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.54 E-value=0.081 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
...++|+|++|+|||||+..|.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4459999999999999999998643
No 274
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.52 E-value=0.044 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
...|+|.|++|+|||||+..|...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998753
No 275
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.51 E-value=0.054 Score=52.20 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.5
Q ss_pred eEEEEecCCCChhhhhhhhcCCc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+|+|+|++|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999998753
No 276
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.45 E-value=0.015 Score=54.83 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=19.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.-+++|+|++|||||||++.+.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 34689999999999999998664
No 277
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.38 E-value=0.05 Score=56.25 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=50.4
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCceE-EEecccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVDFI-IALSKADKL 425 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiI-vvlNKiDl~ 425 (657)
+.++|||||+........ ..+..+|.+|+|+.............+..+...+++++ +|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~d~~-~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSDAA-VVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTHHH-HHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHHHH-HHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 569999999875443222 23467999999999888777788888888888898854 889999974
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.38 E-value=0.013 Score=57.00 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+..+|+|+|++|||||||++.|.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998643
No 279
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.32 E-value=0.059 Score=55.41 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=50.3
Q ss_pred CcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 360 PGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 360 ~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
+.++|||||+....... ...+..+|.+|||+.............+..+...+++ +-+|+|++|.-
T Consensus 202 yD~VIIDtpp~~~~~da-~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVTDA-AIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCTHH-HHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchHHH-HHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 56999999987544322 2245679999999998876667777788888888988 56899999964
No 280
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.27 E-value=0.017 Score=54.68 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.+|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999874
No 281
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.27 E-value=0.045 Score=52.74 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.-+++|+|++|+|||||+..|.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999987
No 282
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.25 E-value=0.11 Score=51.54 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=31.5
Q ss_pred CceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccccc
Q 036359 384 CDIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADKL 425 (657)
Q Consensus 384 aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl~ 425 (657)
.+.-+++||--.-+.....+.+..+...++|+|+++-..|-.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 345678888776565666667777666799999999999863
No 283
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.24 E-value=0.013 Score=57.68 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3459999999999999999998743
No 284
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.23 E-value=0.017 Score=58.70 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999864
No 285
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.22 E-value=0.017 Score=58.42 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 286
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.22 E-value=0.014 Score=57.72 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34469999999999999999998743
No 287
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.19 E-value=0.017 Score=57.92 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=21.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
-+++|+|++|+|||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 569999999999999999999864
No 288
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.11 E-value=0.019 Score=58.94 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|||||||++.|.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999999854
No 289
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.08 E-value=0.019 Score=57.37 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34469999999999999999999864
No 290
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.07 E-value=0.022 Score=55.52 Aligned_cols=26 Identities=8% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
++..+|+|+|++|+|||||++.|++.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 45567999999999999999999853
No 291
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.07 E-value=0.019 Score=58.49 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999999864
No 292
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.05 E-value=0.02 Score=56.93 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.01 E-value=0.02 Score=57.29 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 294
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.01 E-value=0.017 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|+.|+|||||++.|.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999998754
No 295
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.01 E-value=0.02 Score=57.36 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.96 E-value=0.09 Score=55.84 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+|+|+|++|||||||+++|++..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3479999999999999999998643
No 297
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.96 E-value=0.021 Score=57.50 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.+..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999864
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.95 E-value=0.017 Score=56.59 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.-+++|+|++|+|||||++.|.+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999986
No 299
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.93 E-value=0.036 Score=60.03 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+.+|+|+|.+|||||||...|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.92 E-value=0.018 Score=55.58 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..+|+|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999763
No 301
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.92 E-value=0.02 Score=56.49 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999864
No 302
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.87 E-value=0.022 Score=57.97 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44469999999999999999999864
No 303
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.82 E-value=0.023 Score=57.60 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999864
No 304
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.81 E-value=0.022 Score=57.33 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..-+++|+|++|+|||||++.|.+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999985
No 305
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.80 E-value=0.023 Score=57.63 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34469999999999999999999864
No 306
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.76 E-value=0.024 Score=57.22 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.74 E-value=0.026 Score=54.89 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+..+|+|+|++|+|||||++.|.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4557999999999999999999864
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.72 E-value=0.024 Score=57.85 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999864
No 309
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.71 E-value=0.023 Score=54.29 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..+|+|+|++|||||||++.|.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 310
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.69 E-value=0.025 Score=57.57 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.64 E-value=0.026 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.63 E-value=0.027 Score=51.78 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=18.8
Q ss_pred CeEEEEecCCCChhhhhhhh
Q 036359 298 PICCILGHVDAGKTRLLDCI 317 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L 317 (657)
++|+|+|++||||||+...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999998
No 313
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.61 E-value=0.17 Score=45.11 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=59.8
Q ss_pred ceeEEEEEeecCcee---EEEEEEEeeeecCCCEEE----eccccchhhccCCCCCceeEEeeeeecccccccc---ccc
Q 036359 506 QCTILEVKVCEGYGT---TIDVVLINGVLHEGDKIV----EPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAA---QGI 575 (657)
Q Consensus 506 ~~~Vlev~~~~g~Gt---Vv~g~v~~G~Lk~Gd~I~----gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a---~gv 575 (657)
.+.|..+|.++..|+ |+.++|.+|.|+.+..+. |-. ..+-.+.|+..+...|+.. .-+
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~v------------I~eG~i~SLkrfKdDVkEV~~G~EC 79 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQV------------IWKGSLTSLKHHKDDISVIKTGMDC 79 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEE------------EEEECCSEEESSSSCCSEECTTCEE
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEE------------EEEeEehhhcccccccceecCCCEE
Confidence 468999999998898 999999999999998765 111 1233455666665666544 347
Q ss_pred EEEecCCC-CCCCCCeEEEcCC
Q 036359 576 KITAQGLQ-DAIAGTSLYVVGP 596 (657)
Q Consensus 576 ~i~~~gl~-~~~aG~~l~v~~~ 596 (657)
+|.+.+.+ ++..||.+..+.-
T Consensus 80 Gi~l~~fniDik~GDiIE~ye~ 101 (120)
T 2crv_A 80 GLSLDEEKVEFKPGDQVICYEE 101 (120)
T ss_dssp EEECSCTTSCCCTTEEEEEECC
T ss_pred EEEEccCCCCCCCCCEEEEEEE
Confidence 88889999 9999999988754
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.60 E-value=0.025 Score=57.54 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..-+++|+|++|+|||||++.|.+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446999999999999999999986
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.58 E-value=0.027 Score=56.90 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.58 E-value=0.026 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
|+ |+|+|++|+|||||++.|+.
T Consensus 2 Rp--IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RP--IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CC--EEEECCTTSSHHHHHHHHHH
T ss_pred CE--EEEECCCCCCHHHHHHHHHH
Confidence 55 88999999999999999974
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.42 E-value=0.024 Score=55.86 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=16.2
Q ss_pred CCeEEEEecCCCChhhhhhhhc-CC
Q 036359 297 SPICCILGHVDAGKTRLLDCIR-GT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~-~~ 320 (657)
..+|+|+|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999998 64
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.41 E-value=0.044 Score=57.90 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.-.++|.|.+|+|||||+-.|...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346899999999999999888643
No 319
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.39 E-value=0.24 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.0
Q ss_pred eEEEEecCCCChhhhhhhhcCCc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+|+|+|++|+|||||++.|.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999754
No 320
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.35 E-value=0.033 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
++.+|+|+|++|||||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 321
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.26 E-value=0.058 Score=52.79 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=46.2
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
.+.+.|||||+... ......+..+|.+|+|+.........+...+..+...+++ +.+|+|+++..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 46799999998643 3334456789999999987654334455566667666766 56899999864
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.26 E-value=0.031 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|+|++|||||||++.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999864
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.16 E-value=0.036 Score=51.75 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..+|+|+|++|||||||+..|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 44699999999999999998864
No 324
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.13 E-value=0.035 Score=57.28 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.|..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999999864
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.11 E-value=0.028 Score=58.67 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+..+|+|+|++|||||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4457999999999999999999864
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.10 E-value=0.034 Score=59.18 Aligned_cols=25 Identities=40% Similarity=0.701 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|||||||++.|.|..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4468999999999999999999864
No 327
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.09 E-value=0.033 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.6
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+|+|+|++|||||||+..|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999865
No 328
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.01 E-value=0.037 Score=52.46 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999974
No 329
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.00 E-value=0.037 Score=56.28 Aligned_cols=25 Identities=40% Similarity=0.476 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4469999999999999999999865
No 330
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.90 E-value=0.037 Score=59.05 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|||||||++.|.+-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44569999999999999999999864
No 331
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.88 E-value=0.15 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhhhhhhhcCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.++|.|++|+|||||+..|...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 332
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.88 E-value=0.043 Score=52.71 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|+|++|||||||+..|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 333
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.86 E-value=0.032 Score=56.62 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+|+|+|++|||||||++.|.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34469999999999999999998743
No 334
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.82 E-value=0.048 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+|+|+|.+||||||+...|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999864
No 335
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.77 E-value=0.044 Score=50.52 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=19.0
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||++..|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.76 E-value=0.036 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.-+++|+|++|+|||||+..|.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999863
No 337
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.75 E-value=0.04 Score=58.59 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.|..
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 338
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.75 E-value=0.14 Score=48.94 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.5
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..++|.|++|+|||||+..|..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999874
No 339
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.74 E-value=0.04 Score=58.66 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34468999999999999999999864
No 340
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.71 E-value=0.083 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-++.|+|++|+|||||+..|...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999888743
No 341
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.70 E-value=0.046 Score=51.34 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+|+|+|.+||||||++..|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 342
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.67 E-value=0.041 Score=58.61 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.|..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34568999999999999999999864
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.64 E-value=0.042 Score=53.99 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.-+++|+|++|+|||||+..|.+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345699999999999999999984
No 344
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.61 E-value=0.043 Score=58.73 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.|..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34468999999999999999999864
No 345
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.60 E-value=0.043 Score=58.88 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.|-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34468999999999999999999864
No 346
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.54 E-value=0.044 Score=58.63 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.|..
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34468999999999999999999864
No 347
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=92.50 E-value=0.25 Score=56.08 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=67.8
Q ss_pred ceeEE--EEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEec
Q 036359 506 QCTIL--EVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQ 580 (657)
Q Consensus 506 ~~~Vl--ev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~ 580 (657)
...|+ .+|..+. |+|+.+.|.+|+|+.|..|.- .......+|.|+..+++.|+.+. -++|.+.
T Consensus 465 ~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-----------~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~ 532 (594)
T 1g7s_A 465 SIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-----------DDGETVGTVESMQDKGENLKSASRGQKVAMAIK 532 (594)
T ss_dssp EEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-----------TTSCEEEEEEEEEETTEEESEEETTCCEEEEEE
T ss_pred EEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-----------cCCcEEEEEehhcccCccccccCCCCEEEEEEe
Confidence 34444 6888776 899999999999999998871 11124568999999999888763 4788888
Q ss_pred CC---CCCCCCCeEEEcCCCccHHHHHH
Q 036359 581 GL---QDAIAGTSLYVVGPNDDLEDVKK 605 (657)
Q Consensus 581 gl---~~~~aG~~l~v~~~~~~~~~~~~ 605 (657)
|. +++..||.|++..+.+.++.+++
T Consensus 533 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~ 560 (594)
T 1g7s_A 533 DAVYGKTIHEGDTLYVDIPENHYHILKE 560 (594)
T ss_dssp TCCBTTTBCTTCEEEECCCHHHHHTTTS
T ss_pred CcccCCCCCCCCEEEEEEEhHHHHHHHH
Confidence 86 78999999999988666655544
No 348
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.46 E-value=0.06 Score=53.75 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=45.1
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc-eEEEecccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD-FIIALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP-iIvvlNKiDl~ 425 (657)
.+.++|||||+... ......+..+|.+|+|+..+......+...+..+...+++ +.+|+|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 46799999997643 3333455779999999987653334455556666666766 56899999863
No 349
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.45 E-value=0.069 Score=52.45 Aligned_cols=65 Identities=20% Similarity=0.107 Sum_probs=46.3
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcCCc---eEEEecccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERSVD---FIIALSKADKL 425 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vP---iIvvlNKiDl~ 425 (657)
.+.++|||||+.... .....+..+|.+|+|+..+..-...+...+..+...+.+ +.+|+|+++..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 467999999986432 333456789999999987654444555566677777643 78999999864
No 350
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.45 E-value=0.04 Score=54.88 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..+|+|+|++|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999876
No 351
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.45 E-value=0.04 Score=57.37 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+|+|+|++|+|||||++.|.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3469999999999999999998754
No 352
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.44 E-value=0.064 Score=53.21 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=43.6
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhcC---------CceEEEeccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKERS---------VDFIIALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~---------vPiIvvlNKiDl 424 (657)
.+.++|||||+... ......+..+|.+|+|+..+..-...+...+..+...+ .++.+|+|++|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 57799999998543 23444556899999999876533334444455555443 357899999986
No 353
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.44 E-value=0.053 Score=51.97 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..+|+|+|.+|||||||+..|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998864
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.42 E-value=0.046 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|++|||||||+++|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999865
No 355
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.40 E-value=0.025 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.+|+|+|++|||||||++.|.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998753
No 356
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.34 E-value=0.049 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
++.+|+|+|.+||||||+...|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45579999999999999998885
No 357
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.31 E-value=0.055 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+|+|+|++|||||||++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 358
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.27 E-value=0.051 Score=50.52 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+|+|+|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999874
No 359
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.26 E-value=0.34 Score=45.75 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.0
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
.++|.|++|+|||+|+..|..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998875
No 360
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.23 E-value=0.037 Score=57.65 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+|+|+|++|+|||||++.|.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34469999999999999999998854
No 361
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.15 E-value=0.26 Score=54.68 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.6
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.++|.|++|+|||||+..|..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999864
No 362
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.13 E-value=0.3 Score=54.24 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=66.8
Q ss_pred cceeEEEEEeecCceeEEEEEEEeeeecCCCEEEeccccchhhccCCCCCceeEEeeeeeccccccccc---ccEEEecC
Q 036359 505 VQCTILEVKVCEGYGTTIDVVLINGVLHEGDKIVEPIDTKIQALLTPHPMKELRVKGAYQHHKEIKAAQ---GIKITAQG 581 (657)
Q Consensus 505 ~~~~Vlev~~~~g~GtVv~g~v~~G~Lk~Gd~I~gp~~~~Vr~ll~p~~~~e~rVksi~~~~~~v~~a~---gv~i~~~g 581 (657)
..+.|..+|..+..|+|+.+.|.+|+|+.|..|.-+-.+ .-....+|.|+..++..|+.+. -++|.+.|
T Consensus 409 g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~--------~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~~ 480 (501)
T 1zo1_I 409 GLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDN--------VVIYEGELESLRRFKDDVNEVRNGMECGIGVKN 480 (501)
T ss_dssp CCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSS--------CCCEEEEBCCEEETTEEESEEETTCCEEEEBCC
T ss_pred eEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCC--------eEEEEEEEehhcccCccccEECCCCEEEEEEcC
Confidence 456788999998899999999999999999988711111 1124567889999988888763 48888899
Q ss_pred CCCCCCCCeEEEcCC
Q 036359 582 LQDAIAGTSLYVVGP 596 (657)
Q Consensus 582 l~~~~aG~~l~v~~~ 596 (657)
.+++..||.|..+.-
T Consensus 481 ~~~~~~gd~~~~~~~ 495 (501)
T 1zo1_I 481 YNDVRTGDVIEVFEI 495 (501)
T ss_dssp CTTCCTTCEEEECCC
T ss_pred cCCCCCCCEEEEEEE
Confidence 999999999998854
No 363
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.10 E-value=0.058 Score=51.55 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|.+||||||++..|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 364
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.03 E-value=0.039 Score=58.52 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|||||||++.|.|-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3468999999999999999999864
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.97 E-value=0.05 Score=56.38 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+..+|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998863
No 366
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.93 E-value=0.059 Score=57.98 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.+-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34569999999999999999999853
No 367
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.89 E-value=0.2 Score=51.82 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=18.7
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
.|+|.|++|+|||+|+..|..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 389999999999999999853
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.89 E-value=0.073 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+.+.+|+|+.|+|||||+++|..
T Consensus 24 ~~~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 24 FSKGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CCSSEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3345789999999999999999965
No 369
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.89 E-value=0.062 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+|+|+|++||||||++..|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 370
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.81 E-value=0.066 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.++|+|+|++|+|||||+.+|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999853
No 371
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.80 E-value=0.11 Score=53.83 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=20.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.-+++|.|.+|+|||||+-.|...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346899999999999999888643
No 372
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.76 E-value=0.15 Score=51.12 Aligned_cols=64 Identities=9% Similarity=-0.040 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhHHHHHHHHHhc--CCceEEEeccccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQTIESLDLLKER--SVDFIIALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt~e~l~~l~~~--~vPiIvvlNKiDl 424 (657)
.+.++|||||+.... .....+..+|.+|+|+..+..-...+...+..+... ++++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 467999999986433 233445669999999987653333344445566665 4578899999954
No 373
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.74 E-value=0.34 Score=46.20 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=28.5
Q ss_pred ceeeEeecccCCCchhHHHHHHHHHhcCCceEEEecccc
Q 036359 385 DIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKAD 423 (657)
Q Consensus 385 D~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiD 423 (657)
+.-+++||=-+-+.+...+.|..+...++++|+...-.|
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 466888887766655666667655556999999888777
No 374
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.71 E-value=0.073 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
+.++|+|+|.+|+||||++..|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44569999999999999999886
No 375
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.70 E-value=0.071 Score=51.00 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+|||||||++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 599999999999999999875
No 376
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.69 E-value=0.069 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+|+|+|.+||||||+...|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999863
No 377
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.66 E-value=0.1 Score=52.13 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=40.7
Q ss_pred CCCcEEEEeCCCCCcchhhhhcCCCCCceeeEeecccCCCchhH---HHHHHHHHh---cCCceE-EEeccccc
Q 036359 358 KVPGLLVVDTPGHESFTNLRSWGPGLCDIAILVVDIMDGIKPQT---IESLDLLKE---RSVDFI-IALSKADK 424 (657)
Q Consensus 358 ~~~~l~iIDTPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~qt---~e~l~~l~~---~~vPiI-vvlNKiDl 424 (657)
..+.++|||||+..... ....+..+|.+|+|+..+..-...+ .+.+..+.. .+++++ +|+|++|.
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 45779999999864432 2234467999999998765222222 233333322 256764 89999986
No 378
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.66 E-value=0.07 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|+|.+|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999875
No 379
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.66 E-value=0.067 Score=52.72 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+..+|+|+|..|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4557999999999999999999864
No 380
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.65 E-value=0.038 Score=58.69 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|||||||++.|.|..
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34468999999999999999999864
No 381
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.61 E-value=0.069 Score=51.27 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.+..+|+|+|++|||||||+..|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998754
No 382
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.51 E-value=0.074 Score=50.45 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.1
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||++..|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998864
No 383
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.50 E-value=0.17 Score=46.03 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=18.4
Q ss_pred EEEEecCCCChhhhhhhhcC
Q 036359 300 CCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~ 319 (657)
|.|.|++|+|||+|...|..
T Consensus 27 vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998864
No 384
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.49 E-value=0.088 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
+.++|+|+|.+||||||+...|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999885
No 385
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.42 E-value=0.083 Score=57.02 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
+.-+++|+|++|+|||||+..|.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 34568999999999999999764
No 386
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.42 E-value=0.076 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
+..+|+|+|.+||||||+...|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 33469999999999999999886
No 387
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.42 E-value=0.071 Score=50.04 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.2
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||++..|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.40 E-value=0.087 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|.+||||||++..|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999874
No 389
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.37 E-value=0.17 Score=53.82 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-++.|.|++++|||||+-.|...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3446889999999999999888643
No 390
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.34 E-value=0.08 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..+|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999864
No 391
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.30 E-value=0.075 Score=54.80 Aligned_cols=26 Identities=15% Similarity=-0.026 Sum_probs=22.1
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.++.+|+|+|++|||||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35667999999999999999988753
No 392
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.29 E-value=0.092 Score=50.31 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 393
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.19 E-value=0.073 Score=56.52 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.4
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
-+|+|+|++|+|||||++.|.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 359999999999999999999754
No 394
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.12 E-value=0.1 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.++|+|+|.+||||||+...|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 395
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.12 E-value=0.088 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|.+||||||+...|..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.11 E-value=0.095 Score=50.24 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|.+||||||++..|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 397
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.09 E-value=0.077 Score=49.61 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=15.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
++.+|+|+|.+||||||+...|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999885
No 398
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.00 E-value=0.093 Score=49.54 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=21.9
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcCC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.+..+|+|+|.+|+||||++..|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35567999999999999999998753
No 399
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.82 E-value=0.081 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.6
Q ss_pred CCeEEEEecCCCChhhhhhhhc
Q 036359 297 SPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~ 318 (657)
..+|+|+|.+||||||+...|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999986
No 400
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.81 E-value=0.11 Score=49.62 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=22.0
Q ss_pred cCCCCeEEEEecCCCChhhhhhhhcC
Q 036359 294 NLRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 294 ~~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..++.+|+|+|.+||||||+...|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566899999999999999998863
No 401
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.70 E-value=0.11 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
...+|+|+|++|||||||+..|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999987
No 402
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.57 E-value=0.1 Score=48.08 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.3
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..+.+.+|+|+.|+|||||+++|..
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999999874
No 403
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.53 E-value=0.11 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.4
Q ss_pred CCeEEEEecCCCChhhhhhhhc
Q 036359 297 SPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~ 318 (657)
.++|+|+|++||||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999985
No 404
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.53 E-value=0.18 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhhhhhhhcCC
Q 036359 299 ICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.|+|+|++|+|||||+..|...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999998754
No 405
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.51 E-value=0.1 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.5
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+|+|+|++|||||||...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998863
No 406
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.49 E-value=0.1 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+|+|+|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 407
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.38 E-value=0.066 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+|||||||+..|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 408
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.38 E-value=0.18 Score=55.01 Aligned_cols=25 Identities=20% Similarity=0.104 Sum_probs=20.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-.++|.|.+|+|||||+-.|...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHH
Confidence 3446899999999999998887643
No 409
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.37 E-value=0.41 Score=48.91 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=18.4
Q ss_pred EEEEecCCCChhhhhhhhcC
Q 036359 300 CCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~ 319 (657)
|+|.|++|+|||+|+..|..
T Consensus 41 vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999864
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.35 E-value=0.083 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+..+|+|+|++|||||||++.|.+-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 55679999999999999999998754
No 411
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.33 E-value=0.3 Score=50.73 Aligned_cols=21 Identities=14% Similarity=0.138 Sum_probs=19.3
Q ss_pred EEEEecCCCChhhhhhhhcCC
Q 036359 300 CCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~ 320 (657)
++|+|++|+|||||+..|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998763
No 412
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.29 E-value=0.12 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+|+|+|.+||||||+...|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 413
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.29 E-value=0.12 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
+..+|+|+|.+||||||++..|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34569999999999999999886
No 414
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.29 E-value=0.089 Score=56.16 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+|+|+|++|||||||++.|.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3469999999999999999998743
No 415
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=90.27 E-value=0.2 Score=50.45 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCcchhhhhcCCC-------CCceeeEeecccCCCchhHHHHHHHHHhcCCce-EEEecccc
Q 036359 359 VPGLLVVDTPGHESFTNLRSWGPG-------LCDIAILVVDIMDGIKPQTIESLDLLKERSVDF-IIALSKAD 423 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~~~~~g~~-------~aD~aIlVVDa~~g~~~qt~e~l~~l~~~~vPi-IvvlNKiD 423 (657)
.+.+.|||+||-- |..+...+.. ...-+|||+++..|....+...+..+...++++ =|++|++.
T Consensus 126 ~~D~vlIEGagGl-~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGL-LVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSST-TCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCC-cCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 4579999999742 1111111112 234579999998776666776777777888885 47889984
No 416
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.19 E-value=0.22 Score=45.12 Aligned_cols=20 Identities=5% Similarity=0.071 Sum_probs=18.4
Q ss_pred EEEEecCCCChhhhhhhhcC
Q 036359 300 CCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~ 319 (657)
|.|.|++|+|||+|...|..
T Consensus 30 vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCC
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 89999999999999998875
No 417
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.04 E-value=0.1 Score=58.07 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred eEEEEecCCCChhhhhhhhcCCc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+|+|+|++|||||||+++|++..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999998743
No 418
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.01 E-value=0.094 Score=56.93 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-+|+|+|++|||||||++.|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3456999999999999999999874
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.99 E-value=0.11 Score=58.12 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.6
Q ss_pred CeEEEEecCCCChhhhhhhhcCCc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
-+++|+|++|+|||||++.|.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999999864
No 420
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.97 E-value=0.13 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..+|+|+|.+||||||+...|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998853
No 421
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.94 E-value=0.13 Score=50.10 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..+|+|+|.+||||||+...|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999998863
No 422
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.92 E-value=0.12 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|+|.+||||||+++.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999875
No 423
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.91 E-value=0.082 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
-.++|+|++|+|||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 424
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.88 E-value=0.14 Score=49.80 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|+|.+||||||+...|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998863
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.87 E-value=0.098 Score=57.81 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
-+++|+|++|||||||++.|.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 56999999999999999999754
No 426
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.82 E-value=0.43 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.-+++|+|++|+|||||+.+|...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 427
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.73 E-value=0.12 Score=48.55 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.9
Q ss_pred CeEEEEecCCCChhhhhhhhc
Q 036359 298 PICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~ 318 (657)
++|+|+|.+||||||+...|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998885
No 428
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.72 E-value=0.38 Score=52.72 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.+.++|+|++|+|||+|+..|...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 344899999999999999988643
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.69 E-value=0.14 Score=49.70 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.0
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+..+|+|+|.+||||||+...|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998863
No 430
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.68 E-value=0.23 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.0
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..|+|.|++|+|||||+..+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998753
No 431
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.67 E-value=0.14 Score=48.15 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=19.0
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 432
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.53 E-value=0.14 Score=49.36 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=18.8
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999853
No 433
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.52 E-value=0.14 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|++|||||||+..|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999999864
No 434
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.48 E-value=0.13 Score=57.70 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.|..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
No 435
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.41 E-value=0.15 Score=48.15 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=19.2
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 436
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.40 E-value=0.18 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-++.|.|.+|+|||||+-.|...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999888743
No 437
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.36 E-value=0.14 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||+..|.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998543
No 438
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.35 E-value=0.25 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcCC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
.-+++|.|.+|+|||||+-.|...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346899999999999999888753
No 439
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.20 E-value=0.18 Score=55.66 Aligned_cols=25 Identities=0% Similarity=-0.130 Sum_probs=20.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-+++|.|.+|+|||||+-.|...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH
Confidence 3446889999999999999887643
No 440
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.04 E-value=0.15 Score=51.25 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.++|+|+|.+||||||+...|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 441
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.97 E-value=0.15 Score=47.52 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.2
Q ss_pred eEEEEecCCCChhhhhhhhc
Q 036359 299 ICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~ 318 (657)
+|+|+|.+|||||||...|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 49999999999999998885
No 442
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.94 E-value=0.15 Score=47.05 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=18.8
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998853
No 443
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.94 E-value=0.15 Score=58.08 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.|..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3469999999999999999999854
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.90 E-value=0.15 Score=57.06 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34569999999999999999999864
No 445
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.83 E-value=0.17 Score=48.85 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.4
Q ss_pred eEEEEecCCCChhhhhhhhc
Q 036359 299 ICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~ 318 (657)
+|+|+|.+||||||+...|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999985
No 446
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.74 E-value=0.16 Score=50.49 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|.+||||||++..|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999863
No 447
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.71 E-value=0.62 Score=44.86 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=27.7
Q ss_pred eeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccc
Q 036359 386 IAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADK 424 (657)
Q Consensus 386 ~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl 424 (657)
+-+++||=..-+.+...+.+..+...++|+|+..-..|=
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 120 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 446777755545555577777766679999999888874
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.70 E-value=0.18 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhc
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
.++.+|+|+|++|||||||...|.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999886
No 449
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.67 E-value=0.24 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||+..|....
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468999999999999999887543
No 450
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.65 E-value=0.16 Score=52.19 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=18.2
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.++|+|.|.+|||||||.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 451
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.59 E-value=0.18 Score=46.35 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=18.9
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 452
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.58 E-value=0.88 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.3
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..++|.|++|+|||||+..|..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998864
No 453
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.54 E-value=0.17 Score=50.43 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|.+||||||+...|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998854
No 454
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.51 E-value=0.17 Score=57.19 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34469999999999999999999864
No 455
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.51 E-value=0.17 Score=53.81 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
...+++|+|+.|+|||||+++|..
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999873
No 456
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.49 E-value=0.15 Score=51.99 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||+..|.+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34468999999999999999998654
No 457
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.49 E-value=0.67 Score=48.49 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=18.4
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.|.|++|+|||||+-.+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999877754
No 458
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.44 E-value=0.18 Score=57.02 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3469999999999999999999864
No 459
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.37 E-value=0.15 Score=53.86 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+--+++|+|++|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44569999999999999999998753
No 460
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.32 E-value=0.17 Score=57.21 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
..-+++|+|++|+|||||++.|.+..
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34469999999999999999999864
No 461
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.21 E-value=0.37 Score=46.52 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=40.2
Q ss_pred CCcEEEEeCCCCCcchh----hhhcCCCCC-ceeeEeecccCCCchhHHHHHHHHHhcCCceE-EEeccccc
Q 036359 359 VPGLLVVDTPGHESFTN----LRSWGPGLC-DIAILVVDIMDGIKPQTIESLDLLKERSVDFI-IALSKADK 424 (657)
Q Consensus 359 ~~~l~iIDTPGh~~f~~----~~~~g~~~a-D~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiI-vvlNKiDl 424 (657)
.+.+.||||||...... .....+..+ +.+|+|+....+...++...+..+...+++++ +|+|++|.
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 46799999997643110 001111111 23777877755444556666677777788854 88999985
No 462
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.17 E-value=0.37 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-++.|+|++|+|||||+..|...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3346899999999999999988754
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.15 E-value=0.18 Score=57.29 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.|..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3469999999999999999999864
No 464
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.09 E-value=0.17 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|+|+|++|||||||...|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999864
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.06 E-value=0.18 Score=56.43 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999999864
No 466
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.01 E-value=0.15 Score=51.87 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEecCCCChhhhhhhhcC
Q 036359 300 CCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~ 319 (657)
|+|+|++|+|||||+++|.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999976
No 467
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.96 E-value=0.2 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|+|.+|+||||++..|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999865
No 468
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.89 E-value=0.2 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.4
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+..+|+|.|..|+||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998874
No 469
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.88 E-value=0.22 Score=51.81 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-++.|+|++|+|||||+..|...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3446899999999999999988753
No 470
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.85 E-value=0.2 Score=56.83 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4469999999999999999999864
No 471
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.85 E-value=0.2 Score=50.20 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.8
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998853
No 472
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.81 E-value=0.21 Score=51.02 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~ 318 (657)
++.+|+|+|.+||||||+...|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45579999999999999999986
No 473
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.80 E-value=0.19 Score=56.83 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999864
No 474
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.67 E-value=0.72 Score=45.91 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.9
Q ss_pred EEEEecCCCChhhhhhhhcCC
Q 036359 300 CCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~~ 320 (657)
|+|.|++|+|||+|+..|...
T Consensus 32 vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHh
Confidence 889999999999999998743
No 475
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.61 E-value=0.23 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.6
Q ss_pred CeEEEEecCCCChhhhhhhhcC
Q 036359 298 PICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++|+|.|.+||||||+...|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 476
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.60 E-value=0.17 Score=50.22 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEecCCCChhhhhhhhcC
Q 036359 300 CCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~ 319 (657)
|+|+|++|+|||||+.+|.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999875
No 477
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.51 E-value=0.21 Score=56.45 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
.-+++|+|++|+|||||++.|.+-.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4469999999999999999998754
No 478
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.48 E-value=0.24 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=18.9
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||++..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 479
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.47 E-value=0.57 Score=46.22 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=28.5
Q ss_pred ceeeEeecccCCCchhHHHHHHHHHhcCCceEEEeccccc
Q 036359 385 DIAILVVDIMDGIKPQTIESLDLLKERSVDFIIALSKADK 424 (657)
Q Consensus 385 D~aIlVVDa~~g~~~qt~e~l~~l~~~~vPiIvvlNKiDl 424 (657)
+.-++.||=..=+.....+.+..+...|+|+|++.=.+|-
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF 140 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeeccccc
Confidence 4446777866555555666666666789999999888884
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.37 E-value=0.23 Score=48.10 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+.+.+|+|+.|+|||||+++|..
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3456789999999999999999863
No 481
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.34 E-value=0.19 Score=54.86 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCCc
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+.-+++|+|++|+|||||++.|.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44468999999999999999998753
No 482
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.27 E-value=0.22 Score=56.70 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCChhhhhhhhcCCcc
Q 036359 297 SPICCILGHVDAGKTRLLDCIRGTNV 322 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~~~v 322 (657)
.-+++|+|+.|+|||||++.|.|...
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44699999999999999999998643
No 483
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.26 E-value=0.23 Score=48.96 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
++.+|.|+|++||||+|+...|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999988863
No 484
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.16 E-value=0.22 Score=56.66 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.1
Q ss_pred CeEEEEecCCCChhhhhhhhcCCcc
Q 036359 298 PICCILGHVDAGKTRLLDCIRGTNV 322 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~~v 322 (657)
-+++|+|++|+|||||++.|.|..-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3589999999999999999998653
No 485
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.15 E-value=0.27 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|+|.+||||||+...|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999998863
No 486
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.04 E-value=0.2 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.2
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..++|+|++|+|||||++.|.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999999764
No 487
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.00 E-value=0.25 Score=48.26 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.9
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|.+||||||++..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 488
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.92 E-value=0.22 Score=50.08 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.2
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..+|+|+|++|+|||||...|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 489
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.89 E-value=0.29 Score=45.01 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.8
Q ss_pred CeEEEEecCCCChhhhhhhhcCC
Q 036359 298 PICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 298 p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
..|+|.|++|+|||||+..|...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999988753
No 490
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.89 E-value=0.24 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCChhhhhhhhcCC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRGT 320 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~~ 320 (657)
+.-+++|+|++|+|||||+..|.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456899999999999999999863
No 491
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.64 E-value=0.039 Score=54.97 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhhhhhhhcCCc
Q 036359 299 ICCILGHVDAGKTRLLDCIRGTN 321 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~~~ 321 (657)
+++|+|++|||||||+++|.+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999998654
No 492
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.52 E-value=0.27 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+..+|+|.|.+||||||++..|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 493
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.48 E-value=0.28 Score=45.28 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=18.2
Q ss_pred eEEEEecCCCChhhhhhhhc
Q 036359 299 ICCILGHVDAGKTRLLDCIR 318 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~ 318 (657)
+|+|+|.+||||||+...|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 39999999999999998885
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.39 E-value=0.27 Score=47.38 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCChhhhhhhhcC
Q 036359 297 SPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 297 ~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
+.+|+|+|.+||||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999988753
No 495
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.21 E-value=0.22 Score=50.24 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEecCCCChhhhhhhhcC
Q 036359 300 CCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 300 V~viG~vdsGKSTLl~~L~~ 319 (657)
|+|+|++|+|||||+.+|.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999875
No 496
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.19 E-value=0.3 Score=47.60 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.9
Q ss_pred eEEEEecCCCChhhhhhhhcC
Q 036359 299 ICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 299 ~V~viG~vdsGKSTLl~~L~~ 319 (657)
+|+|+|++||||+|+...|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 497
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.14 E-value=0.28 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+++|+|+|++++|||||...|..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHH
Confidence 456799999999999999999864
No 498
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.90 E-value=0.35 Score=47.55 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
.+..+|+|+|.+|+||||+...|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999998864
No 499
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.80 E-value=0.31 Score=46.89 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=20.6
Q ss_pred CCCeEEEEecCCCChhhhhhhhcC
Q 036359 296 RSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 296 r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
...+|+|+|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998863
No 500
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=85.54 E-value=0.31 Score=51.00 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.2
Q ss_pred CCCCeEEEEecCCCChhhhhhhhcC
Q 036359 295 LRSPICCILGHVDAGKTRLLDCIRG 319 (657)
Q Consensus 295 ~r~p~V~viG~vdsGKSTLl~~L~~ 319 (657)
..+.+.+|+|+.|+|||||+++|+.
T Consensus 21 f~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999999854
Done!