BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036360
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 35 SANSNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTE 93
+ S++A K Y+ +E+ HN W+I+ +KVYD+T ++EEHPGG+ +L AG D+TE
Sbjct: 2 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 94 GFYGPQHATRVFDMIDDFYIGDL 116
F H+T +M F IG+L
Sbjct: 62 NFEDVGHSTDAREMSKTFIIGEL 84
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal
Rabbit Cytochrome B5
Length = 104
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 35 SANSNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTE 93
+A S+K K Y+ +E+ HN W+I+ +KVYD+T ++EEHPGG+ +L AG D+TE
Sbjct: 2 AAQSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 94 GFYGPQHATRVFDMIDDFYIGDL 116
F H+T ++ F IG+L
Sbjct: 62 NFEDVGHSTDARELSKTFIIGEL 84
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 38 SNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFY 96
S+KA K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ +L AG D+TE F
Sbjct: 4 SSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE 63
Query: 97 GPQHATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 64 DVGHSTDARELSKTFIIGEL 83
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome
B5
Length = 82
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+A+L A AG D+T F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYG 97
+KA K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ +L AG D+TE F
Sbjct: 1 SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 60
Query: 98 PQHATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 VGHSTDARELSKTFIIGEL 79
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 43 KIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQHA 101
K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+A+L A AG D+T F H+
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 102 TRVFDMIDDFYIGDL 116
T ++ F IG+L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T Y+EEHPGG+ +L AG D+TE F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYG 97
+K K Y+ +E+ HN W+I+ +KVYD+T ++EEHPGG+ +L AG D+TE F
Sbjct: 1 DKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 60
Query: 98 PQHATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 VGHSTDARELSKTFIIGEL 79
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ +L AG D+TE F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ +L AG D+TE F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+A+L AG D+T F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 43 KIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQHA 101
K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ +L A AG D+T F H+
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
Query: 102 TRVFDMIDDFYIGDL 116
T ++ F IG+L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+II KVYD+T ++ EHPGG + +L AG D+TE F
Sbjct: 1 AVKYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+ +M+ F IG+L
Sbjct: 61 HSPDAREMLKTFIIGEL 77
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 43 KIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQHA 101
K +++ EV +N +D W II N VYDVT+++ EHPGG+ +L AG D+TE F H+
Sbjct: 7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66
Query: 102 TRVFDMIDDFYIGDL 116
+ +M+ + +G+L
Sbjct: 67 SDAREMMKQYKVGEL 81
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 38 SNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDA-ILAHAGDDSTEGFY 96
S+ A Y +EV N ++ W++I +VYD+T ++ EHPGG+ +L AG D+TE F
Sbjct: 5 SDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFE 64
Query: 97 GPQHATRVFDMIDDFYIGDL 116
H+ +M+ +YIGD+
Sbjct: 65 DLGHSPDAREMLKQYYIGDV 84
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 35 SANSNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTE 93
+ S+K K Y+ +E+ H W+I+ +KVYD+T ++EEHPGG+ +L AG D+TE
Sbjct: 2 AEQSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 94 GFYGPQHATRVFDMIDDFYIGDL 116
F H+T ++ + IG+L
Sbjct: 62 NFEDVGHSTDARELSKTYIIGEL 84
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 35 SANSNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTE 93
+ S+K K Y+ +E+ H W+I+ +KVYD+T ++EEHPGG+ +L AG D+TE
Sbjct: 1 AEQSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 60
Query: 94 GFYGPQHATRVFDMIDDFYIGDL 116
F H+T ++ + IG+L
Sbjct: 61 NFEDVGHSTDARELSKTYIIGEL 83
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 43 KIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQHA 101
K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ +L AG D+TE F H+
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 102 TRVFDMIDDFYIGDL 116
T ++ F IG+L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ +L AG D+TE +
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 38 SNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFY 96
S+ A Y +EV HN + W+++ +VYD+T ++ EHPGG+ +L AG D+TE F
Sbjct: 6 SDPAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFE 65
Query: 97 GPQHATRVFDMIDDFYIGDL 116
H+ +M +YIGD+
Sbjct: 66 DVGHSPDAREMSKQYYIGDV 85
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ L AG D+TE F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome
B5
Length = 94
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYG 97
+K K Y+ +E+ H W+I+ +KVYD+T ++EEHPGG+ +L AG D+TE F
Sbjct: 1 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 60
Query: 98 PQHATRVFDMIDDFYIGDL 116
H+T V ++ + IG+L
Sbjct: 61 VGHSTDVRELSKTYIIGEL 79
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ +L AG D+TE +
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAILA-HAGDDSTEGFYG 97
+ A Y +EV N ++ W++I +VYD+T ++ EHPGG+ IL AG D+TE F
Sbjct: 1 DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFED 60
Query: 98 PQHATRVFDMIDDFYIGDL 116
H+ +M+ +YIGD+
Sbjct: 61 IGHSPDAREMLKQYYIGDV 79
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro Cytochrome
B5, A Conformation, Ensemble Of 20 Structures
Length = 94
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYG 97
+K K Y+ +E+ H W+I+ +KVYD+T Y+EEHPGG+ +L AG D+TE F
Sbjct: 1 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFED 60
Query: 98 PQHATRVFDMIDDFYIGDL 116
H+T ++ + IG+L
Sbjct: 61 VGHSTDARELSKTYIIGEL 79
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ L AG D+TE F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQ 99
A Y +EV N ++ W++I +VYD+T ++ EHPGG + +L AG D+TE F
Sbjct: 1 AVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+ +M+ +YIGD+
Sbjct: 61 HSPDAREMLKQYYIGDV 77
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYG 97
+ A Y +EV N ++ W++I +VYD+T ++ EHPGG + +L AG D+TE F
Sbjct: 1 DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFED 60
Query: 98 PQHATRVFDMIDDFYIGDL 116
H+ +M+ +YIGD+
Sbjct: 61 VGHSPDAREMLKQYYIGDV 79
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEHPGG+ L AG D+TE F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYG 97
+ A Y +EV N ++ W++I +VYD+T ++ EHPGG+ +L AG D+TE F
Sbjct: 1 DPAVTYYRLEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFED 60
Query: 98 PQHATRVFDMIDDFYIGDL 116
H+ +M+ +YIGD+
Sbjct: 61 VGHSPDAREMLKQYYIGDV 79
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 45 YSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATR 103
Y +EV N + W++I +VYDVT ++ EHPGG + +L AG D++E F H++
Sbjct: 12 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSD 71
Query: 104 VFDMIDDFYIGDL 116
+M+ +YIGD+
Sbjct: 72 AREMLKQYYIGDI 84
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYG 97
+K K Y+ +E+ H W+I+ +KVYD+T ++EEHPGG+ +L AG D+TE F
Sbjct: 1 DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 60
Query: 98 PQHATRVFDMIDDFYIGDL 116
H+T ++ + IG+L
Sbjct: 61 VGHSTDARELSKTYIIGEL 79
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 38 SNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFY 96
S+ A Y +EV N ++ W+++ +VYD+T ++ EHPGG+ +L AG D+TE F
Sbjct: 5 SDPAVTYYRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFE 64
Query: 97 GPQHATRVFDMIDDFYIGDL 116
H+ +M +YIGD+
Sbjct: 65 DVGHSPDAREMSKQYYIGDV 84
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQ 99
A K Y+ +E+ HN W+I+ KVYD+T ++EEH GG+ +L AG D+TE F
Sbjct: 1 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVG 60
Query: 100 HATRVFDMIDDFYIGDL 116
H+T ++ F IG+L
Sbjct: 61 HSTDARELSKTFIIGEL 77
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 40 KASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGP 98
K K Y+ +E+ H W+I+ +KVYD+T ++EEHPGG+ +L AG D+TE F
Sbjct: 2 KDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDV 61
Query: 99 QHATRVFDMIDDFYIGDL 116
H+T ++ + IG+L
Sbjct: 62 GHSTDARELSKTYIIGEL 79
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 37 NSNKAS-KIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPG-GDAILAHAGDDSTEG 94
N +A+ +++ ++V H+ DDCW+ I KVYD+T YV HPG +L G +STE
Sbjct: 1 NETEATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEA 60
Query: 95 F----YGPQHATRVFDMIDDFYIGDLKQ 118
+ YG H++ ++ + IG L++
Sbjct: 61 WETKSYGEPHSSLAARLLQRYLIGTLEE 88
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
Length = 95
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATRV 104
S EV HNK DDCW++I VYD+T ++ HPGG D I +AG D T + P HA V
Sbjct: 7 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNV 65
Query: 105 FD 106
D
Sbjct: 66 ID 67
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATRV 104
S EV HNK DDCW++I VYD+T ++ HPGG D I +AG D T + P HA V
Sbjct: 12 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNV 70
Query: 105 FD 106
D
Sbjct: 71 ID 72
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATRV 104
S EV HNK DDCW++I VYD+T ++ HPGG D I +AG D T + P HA V
Sbjct: 7 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNV 65
Query: 105 FD 106
D
Sbjct: 66 ID 67
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATRV 104
S EV HNK DDCW++I VYD+T ++ HPGG D I +AG D T + P HA V
Sbjct: 12 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNV 70
Query: 105 FD 106
D
Sbjct: 71 ID 72
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATRV 104
S EV HNK DDCW++I VYD+T ++ HPGG D I +AG D T + P HA V
Sbjct: 12 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNV 70
Query: 105 FD 106
D
Sbjct: 71 ID 72
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATRV 104
S EV HNK DDCW++I VYD+T ++ HPGG D I +AG D T + P HA V
Sbjct: 12 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNV 70
Query: 105 FD 106
D
Sbjct: 71 ID 72
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATRV 104
S EV HNK DDCW++I VYD+T ++ HPGG D I +AG D T + P HA V
Sbjct: 12 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNV 70
Query: 105 FD 106
D
Sbjct: 71 ID 72
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGFYGPQHATRV 104
+++E+ HNK+DDCWI I+ VY+V+ Y+E HPGG D ++ AG D TE F
Sbjct: 9 TEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNY 68
Query: 105 FDMIDDFYIGDL 116
M+ + +G +
Sbjct: 69 ESMLKECLVGRM 80
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 43 KIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAILAHAGDDST 92
K Y+K+EV HN ++D WII +V+D+TS+ +EHPGG IL AG D+T
Sbjct: 4 KKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGGKVILNKAGQDAT 53
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain Of
Human Sulfite Oxidase
Length = 82
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 39 NKASKIYSKDEVTLHNKRDD-CWIIIKNKVYDVTSYVEEHPGGDAILAHAGDDSTEGF-- 95
+++ IY+K+EV+ H + W+ + ++V+DVT +V+ HPGG + L A E F
Sbjct: 1 QESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWA 60
Query: 96 -YGPQHATRVFDMIDDFYIGDL 116
Y + + V +++ + IG+L
Sbjct: 61 LYAVHNQSHVRELLAQYKIGEL 82
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 YSKDEVTLHNKRDD-CWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGF---YGPQ 99
Y+++EV H ++ W+ V+DVT +VE HPGG D IL AG + E F Y
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAVH 65
Query: 100 HATRVFDMIDDFYIGDL 116
V +++ + +G+L
Sbjct: 66 GEPHVLELLQQYKVGEL 82
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 YSKDEVTLHNKRDD-CWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGF---YGPQ 99
Y+++EV H ++ W+ V+DVT +VE HPGG D IL AG + E F Y
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAVH 65
Query: 100 HATRVFDMIDDFYIGDL 116
V +++ + +G+L
Sbjct: 66 GEPHVLELLQQYKVGEL 82
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 YSKDEVTLHNKRDD-CWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGF---YGPQ 99
Y+++EV H ++ W+ V+DVT +VE HPGG D IL AG + E F Y
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAVH 65
Query: 100 HATRVFDMIDDFYIGDL 116
V +++ + +G+L
Sbjct: 66 GEPHVLELLQQYKVGEL 82
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 YSKDEVTLHNKRDD-CWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGF---YGPQ 99
Y+++EV H ++ W+ V+DVT +VE HPGG D IL AG + E F Y
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAVH 65
Query: 100 HATRVFDMIDDFYIGDL 116
V +++ + +G+L
Sbjct: 66 GEPHVLELLQQYKVGEL 82
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 YSKDEVTLHNKRDD-CWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGF---YGPQ 99
Y+++EV H ++ W+ V+DVT +VE HPGG D IL AG + E F Y
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAVH 65
Query: 100 HATRVFDMIDDFYIGDL 116
V +++ + +G+L
Sbjct: 66 GEPHVLELLQQYKVGEL 82
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 YSKDEVTLHNKRDD-CWIIIKNKVYDVTSYVEEHPGG-DAILAHAGDDSTEGF---YGPQ 99
Y+++EV H ++ W+ V+DVT +VE HPGG D IL AG + E F Y
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAG-GALEPFWALYAVH 65
Query: 100 HATRVFDMIDDFYIGDL 116
V +++ + +G+L
Sbjct: 66 GEPHVLELLQQYKVGEL 82
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 73 YVEEHPGGDAILAHAGDDSTEGFY-GPQHATRVFDMIDDFYIGDLKQ 118
Y E G +LA G + G+Y P+H ++VFD + +Y GDL Q
Sbjct: 379 YREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQ 425
>pdb|2KEO|A Chain A, Solution Nmr Structure Of Human Protein Hs00059,
Cytochrome-B5-Like Domain Of The Herc2 E3 Ligase.
Northeast Structural Genomics Consortium (Nesg) Target
Ht98a
Length = 112
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 26 SGHSKSTHSSANSNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAILA 85
S ++ + N+ K + + D + HN W +I KVYD+ + + ++ILA
Sbjct: 8 SSGRENLYFQGNNEKVTLVRIAD-LENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILA 66
Query: 86 H-AGDD 90
AG+D
Sbjct: 67 QFAGED 72
>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 390
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 63 IKNKVYDVTSYVEEHPGGDAILAHAGDDSTEGFYGPQHATRVFDM--IDDFYIGD 115
+++K+ D T YV+E + +D + +YGP H + F++ I + I D
Sbjct: 262 VESKLAD-TKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISD 315
>pdb|2XYD|A Chain A, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
pdb|2XYD|B Chain B, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
Length = 610
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 29 SKSTHSSANSNKASKIYSKDEVTLHNKRDDCW 60
+K +A ++ S+IYS +V L NK CW
Sbjct: 106 AKRQQYNALLSQMSRIYSTAKVCLPNKTATCW 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,387,173
Number of Sequences: 62578
Number of extensions: 134303
Number of successful extensions: 311
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 63
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)