Query 036360
Match_columns 118
No_of_seqs 121 out of 1105
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 11:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0537 Cytochrome b5 [Energy 99.9 5.8E-28 1.3E-32 166.5 4.9 78 41-118 3-81 (124)
2 PF00173 Cyt-b5: Cytochrome b5 99.9 4.3E-24 9.3E-29 134.3 2.1 74 44-117 1-76 (76)
3 KOG0536 Flavohemoprotein b5+b5 99.8 1.4E-20 3E-25 130.0 3.3 76 42-118 67-144 (145)
4 PLN03199 delta6-acyl-lipid des 99.8 9.2E-20 2E-24 149.4 5.6 82 34-117 15-96 (485)
5 PLN03198 delta6-acyl-lipid des 99.8 8.8E-20 1.9E-24 150.8 5.0 76 41-117 102-177 (526)
6 COG5274 CYB5 Cytochrome b invo 99.8 3.1E-19 6.6E-24 127.5 5.4 77 41-117 48-125 (164)
7 PLN02252 nitrate reductase [NA 99.8 8.2E-19 1.8E-23 152.0 6.1 78 39-117 514-592 (888)
8 KOG4576 Sulfite oxidase, heme- 99.6 1.2E-16 2.5E-21 111.1 2.4 79 39-118 76-158 (167)
9 KOG4232 Delta 6-fatty acid des 99.5 7.3E-15 1.6E-19 117.7 2.3 74 42-117 7-83 (430)
10 COG4892 Predicted heme/steroid 99.0 2.3E-10 5.1E-15 71.3 3.9 72 43-117 2-76 (81)
11 KOG1110 Putative steroid membr 98.8 1.4E-08 3.1E-13 73.6 6.0 61 35-96 48-112 (183)
12 KOG1108 Predicted heme/steroid 97.9 3.5E-05 7.6E-10 58.3 5.6 55 42-96 59-116 (281)
13 PF14901 Jiv90: Cleavage induc 88.8 0.25 5.3E-06 32.6 1.4 15 60-74 58-72 (94)
14 KOG0720 Molecular chaperone (D 65.2 2.4 5.2E-05 35.4 0.4 17 58-74 378-394 (490)
15 PRK13159 cytochrome c-type bio 57.7 23 0.00051 25.3 4.3 23 44-66 37-59 (155)
16 PF12301 CD99L2: CD99 antigen 57.6 11 0.00025 27.2 2.7 28 3-30 122-149 (169)
17 PHA02131 hypothetical protein 43.9 14 0.0003 22.2 1.1 21 52-72 23-45 (70)
18 PRK13254 cytochrome c-type bio 43.7 59 0.0013 22.9 4.5 12 43-54 36-47 (148)
19 PRK13150 cytochrome c-type bio 41.4 69 0.0015 23.0 4.6 9 44-52 37-45 (159)
20 PF11698 V-ATPase_H_C: V-ATPas 40.0 5.6 0.00012 27.2 -1.1 25 67-91 65-90 (119)
21 PRK06549 acetyl-CoA carboxylas 39.0 21 0.00046 24.7 1.6 14 59-72 5-18 (130)
22 PRK13165 cytochrome c-type bio 38.7 78 0.0017 22.8 4.5 11 44-54 37-47 (160)
23 TIGR00037 eIF_5A translation i 36.8 18 0.0004 24.9 1.0 22 58-79 15-36 (130)
24 PF05961 Chordopox_A13L: Chord 36.7 75 0.0016 19.6 3.6 24 3-26 7-30 (68)
25 PF07172 GRP: Glycine rich pro 36.1 51 0.0011 21.5 3.0 12 4-15 7-18 (95)
26 PF10618 Tail_tube: Phage tail 31.3 31 0.00067 23.4 1.4 25 57-81 7-31 (119)
27 TIGR02148 Fibro_Slime fibro-sl 29.1 42 0.00091 21.9 1.7 25 49-73 20-45 (90)
28 COG2332 CcmE Cytochrome c-type 29.1 1.3E+02 0.0029 21.5 4.3 24 44-67 37-60 (153)
29 cd00256 VATPase_H VATPase_H, r 28.9 14 0.00031 30.5 -0.7 32 58-91 368-400 (429)
30 PF11446 DUF2897: Protein of u 28.8 96 0.0021 18.3 3.1 10 6-15 9-18 (55)
31 PRK06764 hypothetical protein; 28.5 47 0.001 21.7 1.8 21 53-73 80-101 (105)
32 PF07069 PRRSV_2b: Porcine rep 27.4 22 0.00049 21.7 0.2 14 2-15 29-42 (73)
33 COG3763 Uncharacterized protei 27.1 58 0.0013 20.3 2.0 18 2-19 8-25 (71)
34 PRK11677 hypothetical protein; 26.7 74 0.0016 22.2 2.7 20 2-21 4-23 (134)
35 PHA03049 IMV membrane protein; 26.7 1.3E+02 0.0028 18.6 3.4 23 4-26 8-30 (68)
36 PRK10893 lipopolysaccharide ex 25.9 73 0.0016 23.3 2.7 31 63-93 48-78 (192)
37 PF07533 BRK: BRK domain; Int 23.9 26 0.00057 19.8 0.0 14 67-80 27-40 (46)
38 PF05454 DAG1: Dystroglycan (D 23.4 27 0.00058 27.5 0.0 47 3-52 155-201 (290)
39 TIGR03064 sortase_srtB sortase 23.4 1.2E+02 0.0025 22.9 3.5 26 43-68 55-80 (232)
40 PF05521 Phage_H_T_join: Phage 22.9 74 0.0016 19.2 2.0 17 57-73 65-81 (95)
41 PF10766 DUF2592: Protein of u 21.3 74 0.0016 17.6 1.5 15 4-18 14-28 (41)
42 PF02069 Metallothio_Pro: Prok 21.1 50 0.0011 19.3 0.8 22 61-82 23-44 (52)
43 PF03672 UPF0154: Uncharacteri 20.9 1E+02 0.0022 18.8 2.2 16 3-18 2-17 (64)
44 PF02797 Chal_sti_synt_C: Chal 20.6 30 0.00065 24.3 -0.2 11 75-85 64-74 (151)
45 PF14756 Pdase_C33_assoc: Pept 20.4 51 0.0011 22.8 0.9 36 46-81 30-65 (147)
46 COG4856 Uncharacterized protei 20.2 96 0.0021 25.5 2.5 21 3-23 11-31 (403)
47 PF06295 DUF1043: Protein of u 20.1 1E+02 0.0022 21.0 2.3 16 5-20 3-18 (128)
48 PF08207 EFP_N: Elongation fac 20.0 76 0.0016 18.5 1.5 23 58-80 8-30 (58)
No 1
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.94 E-value=5.8e-28 Score=166.47 Aligned_cols=78 Identities=47% Similarity=0.942 Sum_probs=73.1
Q ss_pred cCCccCHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcchhc-cccCCCccccccCCCCcHHHHHhhhhceeeeccC
Q 036360 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQHATRVFDMIDDFYIGDLKQ 118 (118)
Q Consensus 41 ~~~~~t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~~il-~~~G~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~~ 118 (118)
..+.|+++|+++||..++|||+|+|+|||||.|+++||||..+| .+||+|+|+.|.+..||..|+++|++|+||.+.+
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~ 81 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPT 81 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccC
Confidence 45789999999999999999999999999999999999998754 8999999999999899999999999999999863
No 2
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.89 E-value=4.3e-24 Score=134.31 Aligned_cols=74 Identities=41% Similarity=0.812 Sum_probs=67.1
Q ss_pred ccCHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcchhc-cccCCCccccccCCCCcHHHHHhhhh-ceeeecc
Q 036360 44 IYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQHATRVFDMIDD-FYIGDLK 117 (118)
Q Consensus 44 ~~t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~~il-~~~G~D~T~~f~~~~Hs~~a~~~l~~-~~IG~l~ 117 (118)
+||++||++|+.++++|++|+|+|||||+|+..||||..++ .++|+|+|+.|....|+..+.++|++ |+||+|+
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 48999999999889999999999999999999999998765 89999999999445799999999999 9999985
No 3
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.81 E-value=1.4e-20 Score=130.01 Aligned_cols=76 Identities=39% Similarity=0.746 Sum_probs=66.9
Q ss_pred CCccCHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcch-hccccCCCccccccCCCCcH-HHHHhhhhceeeeccC
Q 036360 42 SKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDA-ILAHAGDDSTEGFYGPQHAT-RVFDMIDDFYIGDLKQ 118 (118)
Q Consensus 42 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~~-il~~~G~D~T~~f~~~~Hs~-~a~~~l~~~~IG~l~~ 118 (118)
...+|.+||++||+.++||++|+|+|||||.|+..||||.. ++.++|+|+|..|+. .|.. +-.++|+..+||.|.+
T Consensus 67 ~i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk-~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 67 PIPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNK-YHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred CCccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHH-HHHHhcHHHHHhhceeeeecc
Confidence 34789999999999999999999999999999999999986 569999999999975 5666 4556889999998754
No 4
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.79 E-value=9.2e-20 Score=149.43 Aligned_cols=82 Identities=43% Similarity=0.712 Sum_probs=72.9
Q ss_pred CcCCCCccCCccCHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcchhccccCCCccccccCCCCcHHHHHhhhhcee
Q 036360 34 SSANSNKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAILAHAGDDSTEGFYGPQHATRVFDMIDDFYI 113 (118)
Q Consensus 34 ~~~~~~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~~il~~~G~D~T~~f~~~~Hs~~a~~~l~~~~I 113 (118)
+....+...+.+|++|+++|+++++||++|+|+|||||+|. .||||+.|+.++|+|+|+.|.. .|+..++++|++|+|
T Consensus 15 ~~~~~~~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~~i~~~aG~DaT~~F~~-~H~~~~~~~l~~~~i 92 (485)
T PLN03199 15 AALKLAEKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGAVIFTHAGDDMTDIFAA-FHAPGSQALMKKFYI 92 (485)
T ss_pred cccccCccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCchHHHhhCCCChhHHHHH-hcCHHHHHHHHhccc
Confidence 33444566688999999999999999999999999999997 8999986668999999999975 699999999999999
Q ss_pred eecc
Q 036360 114 GDLK 117 (118)
Q Consensus 114 G~l~ 117 (118)
|+++
T Consensus 93 G~l~ 96 (485)
T PLN03199 93 GDLI 96 (485)
T ss_pred cccc
Confidence 9985
No 5
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.79 E-value=8.8e-20 Score=150.75 Aligned_cols=76 Identities=49% Similarity=0.883 Sum_probs=70.3
Q ss_pred cCCccCHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcchhccccCCCccccccCCCCcHHHHHhhhhceeeecc
Q 036360 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAILAHAGDDSTEGFYGPQHATRVFDMIDDFYIGDLK 117 (118)
Q Consensus 41 ~~~~~t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~~il~~~G~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~ 117 (118)
..+.+|++|+++|++.++||++|+|+|||+|+|++.||||+.|+.++|+|+|+.|+. .|+..+.++|++|+||+++
T Consensus 102 ~~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~~i~~~aG~DaT~~F~~-~H~~~~~~~l~~~~IG~l~ 177 (526)
T PLN03198 102 KSKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGSVISTYFGRDGTDAFSS-FHAASTWKILQDFYIGDVD 177 (526)
T ss_pred ccCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCchHHHHhcCCcHhHHHHH-hcCHHHHHHHhhCcceecC
Confidence 346999999999999999999999999999999999999985558999999999975 6999999999999999986
No 6
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.77 E-value=3.1e-19 Score=127.48 Aligned_cols=77 Identities=39% Similarity=0.840 Sum_probs=71.7
Q ss_pred cCCccCHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcchhc-cccCCCccccccCCCCcHHHHHhhhhceeeecc
Q 036360 41 ASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDSTEGFYGPQHATRVFDMIDDFYIGDLK 117 (118)
Q Consensus 41 ~~~~~t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~~il-~~~G~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~ 117 (118)
....++.+|+.+|++.++||++|+|+|||||+|+..||||+.++ .++|+|+|+.|....|+..+.++++.++||.+.
T Consensus 48 ~~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~ 125 (164)
T COG5274 48 SPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVH 125 (164)
T ss_pred ccccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeeccc
Confidence 45789999999999999999999999999999999999999876 799999999999889999999999999999763
No 7
>PLN02252 nitrate reductase [NADPH]
Probab=99.75 E-value=8.2e-19 Score=152.01 Aligned_cols=78 Identities=44% Similarity=0.854 Sum_probs=71.8
Q ss_pred CccCCccCHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcch-hccccCCCccccccCCCCcHHHHHhhhhceeeecc
Q 036360 39 NKASKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDA-ILAHAGDDSTEGFYGPQHATRVFDMIDDFYIGDLK 117 (118)
Q Consensus 39 ~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~~-il~~~G~D~T~~f~~~~Hs~~a~~~l~~~~IG~l~ 117 (118)
+...+.+|++|+++|+..++||++|+|+|||+|+|+..||||.. |+.++|+|+|+.|.+ .|+..|+++|++|+||+|.
T Consensus 514 ~~~~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~-~Hs~~a~~~L~~~~IG~l~ 592 (888)
T PLN02252 514 NTGSKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDA-IHSDKAKKMLEDYRIGELV 592 (888)
T ss_pred ccccceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhh-hhhHHHHHHHHhCcCCccc
Confidence 34568999999999999999999999999999999999999986 558999999999975 6999999999999999985
No 8
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.63 E-value=1.2e-16 Score=111.10 Aligned_cols=79 Identities=34% Similarity=0.722 Sum_probs=66.4
Q ss_pred CccCCccCHHHHhhhcCCC-CeEEEEcCeeecccchhhhCCCcchhccccCCCccccccCC---CCcHHHHHhhhhceee
Q 036360 39 NKASKIYSKDEVTLHNKRD-DCWIIIKNKVYDVTSYVEEHPGGDAILAHAGDDSTEGFYGP---QHATRVFDMIDDFYIG 114 (118)
Q Consensus 39 ~~~~~~~t~~ev~~h~~~~-~~wvii~g~VYDvt~f~~~HPgG~~il~~~G~D~T~~f~~~---~Hs~~a~~~l~~~~IG 114 (118)
....+.|+.+||.+|+... +.||.+...|||||+|+..||||++|+..+|.-+.. |++. +...+++++|+.|+||
T Consensus 76 lE~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillAAG~a~dP-FWalY~qHnt~eVlElLegyrIG 154 (167)
T KOG4576|consen 76 LESLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLAAGGALDP-FWALYAQHNTSEVLELLEGYRIG 154 (167)
T ss_pred hhhccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeeeecCCCcCc-HHHHHHHhhHHHHHHHHhhcccc
Confidence 3457899999999999875 699999999999999999999999999888875444 6542 3445799999999999
Q ss_pred eccC
Q 036360 115 DLKQ 118 (118)
Q Consensus 115 ~l~~ 118 (118)
+|.+
T Consensus 155 ~L~~ 158 (167)
T KOG4576|consen 155 ELNP 158 (167)
T ss_pred cCCh
Confidence 9863
No 9
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.50 E-value=7.3e-15 Score=117.67 Aligned_cols=74 Identities=30% Similarity=0.669 Sum_probs=64.6
Q ss_pred CCccCHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcch-hccccCCCccccccCCCCcHH--HHHhhhhceeeecc
Q 036360 42 SKIYSKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGDA-ILAHAGDDSTEGFYGPQHATR--VFDMIDDFYIGDLK 117 (118)
Q Consensus 42 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~~-il~~~G~D~T~~f~~~~Hs~~--a~~~l~~~~IG~l~ 117 (118)
.+++++++.++|++.++.|++++| |||+|+|++.||||+. |..++|+|+|++|.+ .|... |...|+...+|...
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~A-fH~~~~~~~~~l~~l~~~~~~ 83 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEA-FHPGTAFAYKHLKPLLIGELS 83 (430)
T ss_pred ceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHH-hCCChHHHHHHHHHHHcCCcC
Confidence 458999999999999999999999 9999999999999986 558999999999985 46554 77888888888754
No 10
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.04 E-value=2.3e-10 Score=71.35 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=55.0
Q ss_pred CccCHHHHhhhcCCC-CeEEEEcCeeecccchhhhCCCcc-hhccccCCCcccccc-CCCCcHHHHHhhhhceeeecc
Q 036360 43 KIYSKDEVTLHNKRD-DCWIIIKNKVYDVTSYVEEHPGGD-AILAHAGDDSTEGFY-GPQHATRVFDMIDDFYIGDLK 117 (118)
Q Consensus 43 ~~~t~~ev~~h~~~~-~~wvii~g~VYDvt~f~~~HPgG~-~il~~~G~D~T~~f~-~~~Hs~~a~~~l~~~~IG~l~ 117 (118)
+.||++|+.+.|+++ ..+|.++|.||||+.-. .+-+|. .-+.-+|+|+|+.|+ ..+|..++...++ .||.|.
T Consensus 2 refTLEELs~ynG~nGpaYiA~~G~VYDvS~s~-~W~dGtHqglhsaG~DLs~~~~~~aphg~eil~~~P--vVG~L~ 76 (81)
T COG4892 2 REFTLEELSKYNGENGPAYIAVNGTVYDVSLSP-SWGDGTHQGLHSAGKDLSSEFNSCAPHGMEILTSLP--VVGALI 76 (81)
T ss_pred ceecHHHHHhhcCCCCCeEEEECCEEEeeccCc-ccCCCccccccccchhHHHHHhhcCCchhHHHhcCc--hhheee
Confidence 579999999999875 69999999999999753 334444 345679999999997 3467777665555 567654
No 11
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=98.79 E-value=1.4e-08 Score=73.60 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=47.5
Q ss_pred cCCCCccCCccCHHHHhhhcCCC---CeEEEEcCeeecccchhhhC-CCcchhccccCCCcccccc
Q 036360 35 SANSNKASKIYSKDEVTLHNKRD---DCWIIIKNKVYDVTSYVEEH-PGGDAILAHAGDDSTEGFY 96 (118)
Q Consensus 35 ~~~~~~~~~~~t~~ev~~h~~~~---~~wvii~g~VYDvt~f~~~H-PgG~~il~~~G~D~T~~f~ 96 (118)
+..+.+..+.||.+||++.++.+ ..++.|+|+|||||.-.+.. |||. .-.+||+|+|+.+.
T Consensus 48 P~~~~P~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~Gp-Y~~fAG~DASR~La 112 (183)
T KOG1110|consen 48 PKESLPKVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGP-YSLFAGKDASRGLA 112 (183)
T ss_pred CccCCCcccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCC-chhhcccchHHHHH
Confidence 33345566799999999999865 48899999999999987754 5554 55689999998653
No 12
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=97.86 E-value=3.5e-05 Score=58.32 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=45.8
Q ss_pred CCccCHHHHhhhcCCC---CeEEEEcCeeecccchhhhCCCcchhccccCCCcccccc
Q 036360 42 SKIYSKDEVTLHNKRD---DCWIIIKNKVYDVTSYVEEHPGGDAILAHAGDDSTEGFY 96 (118)
Q Consensus 42 ~~~~t~~ev~~h~~~~---~~wvii~g~VYDvt~f~~~HPgG~~il~~~G~D~T~~f~ 96 (118)
...||++||+..|+.. ..++.|-|.||||+.-......|...-.++|+|+|.+|-
T Consensus 59 k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFv 116 (281)
T KOG1108|consen 59 KILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFV 116 (281)
T ss_pred ceeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchhee
Confidence 3589999999999865 388999999999999865555566677899999999984
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=88.82 E-value=0.25 Score=32.59 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=12.7
Q ss_pred EEEEcCeeecccchh
Q 036360 60 WIIIKNKVYDVTSYV 74 (118)
Q Consensus 60 wvii~g~VYDvt~f~ 74 (118)
+...+|+|||+|+|+
T Consensus 58 y~c~~g~VyDiTeWA 72 (94)
T PF14901_consen 58 YACMDGKVYDITEWA 72 (94)
T ss_pred EEEcCceEEehhhhh
Confidence 445799999999997
No 14
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=65.25 E-value=2.4 Score=35.38 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=14.4
Q ss_pred CeEEEEcCeeecccchh
Q 036360 58 DCWIIIKNKVYDVTSYV 74 (118)
Q Consensus 58 ~~wvii~g~VYDvt~f~ 74 (118)
..++.-+|+|||+|+|+
T Consensus 378 tyy~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 378 TYYACMDGKVYDITEWA 394 (490)
T ss_pred eeeeecCCceEeehhhh
Confidence 35667899999999997
No 15
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=57.72 E-value=23 Score=25.32 Aligned_cols=23 Identities=4% Similarity=0.029 Sum_probs=12.0
Q ss_pred ccCHHHHhhhcCCCCeEEEEcCe
Q 036360 44 IYSKDEVTLHNKRDDCWIIIKNK 66 (118)
Q Consensus 44 ~~t~~ev~~h~~~~~~wvii~g~ 66 (118)
.+|++|+.......+.-+.+.|.
T Consensus 37 F~tpsEv~~~~~~~~~~~RlGG~ 59 (155)
T PRK13159 37 LFTPSQVRAGAAAGYQQFRLGGM 59 (155)
T ss_pred EECHHHHhcCCcccCCeEEEccE
Confidence 47777777654433333444444
No 16
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=57.62 E-value=11 Score=27.24 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 036360 3 IIVAALILGAILGVFIFIPRHPTSGHSK 30 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (118)
-++..+++|.+..|+.|.++..|..+.+
T Consensus 122 sav~valvGAvsSyiaYqkKKlCF~iq~ 149 (169)
T PF12301_consen 122 SAVVVALVGAVSSYIAYQKKKLCFKIQQ 149 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhhccceeecc
Confidence 3455566888888999999999995544
No 17
>PHA02131 hypothetical protein
Probab=43.93 E-value=14 Score=22.24 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=14.8
Q ss_pred hhcCCC-CeEEEE-cCeeecccc
Q 036360 52 LHNKRD-DCWIII-KNKVYDVTS 72 (118)
Q Consensus 52 ~h~~~~-~~wvii-~g~VYDvt~ 72 (118)
.|...+ .||+.+ +|+|-|+|=
T Consensus 23 gh~~~g~~c~imfk~~~v~dctf 45 (70)
T PHA02131 23 GHYRFGISCWIMFKNDQVIDCTF 45 (70)
T ss_pred cceecceEEEEEEcCCCEEEeee
Confidence 344444 599977 788888874
No 18
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=43.73 E-value=59 Score=22.95 Aligned_cols=12 Identities=25% Similarity=0.312 Sum_probs=8.2
Q ss_pred CccCHHHHhhhc
Q 036360 43 KIYSKDEVTLHN 54 (118)
Q Consensus 43 ~~~t~~ev~~h~ 54 (118)
-.+|++|+.+..
T Consensus 36 yf~tpse~~~~~ 47 (148)
T PRK13254 36 FFYTPSEVAEGE 47 (148)
T ss_pred eeeCHHHHhcCC
Confidence 367888887743
No 19
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=41.36 E-value=69 Score=23.02 Aligned_cols=9 Identities=22% Similarity=0.563 Sum_probs=6.6
Q ss_pred ccCHHHHhh
Q 036360 44 IYSKDEVTL 52 (118)
Q Consensus 44 ~~t~~ev~~ 52 (118)
.+|++|+.+
T Consensus 37 F~tPsev~~ 45 (159)
T PRK13150 37 FYTPGEILY 45 (159)
T ss_pred EeCHHHHhc
Confidence 578888864
No 20
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.01 E-value=5.6 Score=27.24 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=18.8
Q ss_pred eecccchhhhCCCcchhc-cccCCCc
Q 036360 67 VYDVTSYVEEHPGGDAIL-AHAGDDS 91 (118)
Q Consensus 67 VYDvt~f~~~HPgG~~il-~~~G~D~ 91 (118)
-+|+..|++.||.|..++ +..+++.
T Consensus 65 c~Dig~~vr~~p~gr~ii~~lg~K~~ 90 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNIIEKLGAKER 90 (119)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHSHHHH
T ss_pred hcchHHHHHHChhHHHHHHhcChHHH
Confidence 489999999999999877 4555543
No 21
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=39.03 E-value=21 Score=24.67 Aligned_cols=14 Identities=36% Similarity=0.264 Sum_probs=11.5
Q ss_pred eEEEEcCeeecccc
Q 036360 59 CWIIIKNKVYDVTS 72 (118)
Q Consensus 59 ~wvii~g~VYDvt~ 72 (118)
.-|.+||++|||+=
T Consensus 5 ~~itvng~~y~V~v 18 (130)
T PRK06549 5 FKITIDGKEYLVEM 18 (130)
T ss_pred EEEEECCEEEEEEE
Confidence 56789999999963
No 22
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=38.67 E-value=78 Score=22.76 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=8.1
Q ss_pred ccCHHHHhhhc
Q 036360 44 IYSKDEVTLHN 54 (118)
Q Consensus 44 ~~t~~ev~~h~ 54 (118)
.+|++|+.+..
T Consensus 37 F~tPsev~~~~ 47 (160)
T PRK13165 37 FYTPGEILYGK 47 (160)
T ss_pred EeCHHHHhccc
Confidence 58888888753
No 23
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=36.78 E-value=18 Score=24.87 Aligned_cols=22 Identities=14% Similarity=0.471 Sum_probs=18.6
Q ss_pred CeEEEEcCeeecccchhhhCCC
Q 036360 58 DCWIIIKNKVYDVTSYVEEHPG 79 (118)
Q Consensus 58 ~~wvii~g~VYDvt~f~~~HPg 79 (118)
...+.++|..|-|.++-...||
T Consensus 15 G~~i~~~g~p~~V~e~~~~kpG 36 (130)
T TIGR00037 15 GGYVVIDGRPCKIVDISTSKPG 36 (130)
T ss_pred CCEEEECCEEEEEEEEEecCCC
Confidence 4688899999999999766688
No 24
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=36.66 E-value=75 Score=19.63 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCC
Q 036360 3 IIVAALILGAILGVFIFIPRHPTS 26 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (118)
++.+|++.-+++.|-++.++....
T Consensus 7 Li~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccC
Confidence 344455544455566777666654
No 25
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.12 E-value=51 Score=21.52 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 036360 4 IVAALILGAILG 15 (118)
Q Consensus 4 ~~~~~~~~~~~~ 15 (118)
+++.++|+.++.
T Consensus 7 llL~l~LA~lLl 18 (95)
T PF07172_consen 7 LLLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 26
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=31.27 E-value=31 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCeEEEEcCeeecccchhhhCCCcc
Q 036360 57 DDCWIIIKNKVYDVTSYVEEHPGGD 81 (118)
Q Consensus 57 ~~~wvii~g~VYDvt~f~~~HPgG~ 81 (118)
+.++|.++|..|++.+=...-|||-
T Consensus 7 G~a~i~vdG~~l~~~~g~~~~~gg~ 31 (119)
T PF10618_consen 7 GTAYIRVDGQQLPVKGGATYNPGGV 31 (119)
T ss_pred EEEEEEECCEEEEccCCeEECCCCe
Confidence 4689999999999998888888874
No 27
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=29.12 E-value=42 Score=21.90 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=18.3
Q ss_pred HHhhhcCCCCeEEEEcCe-eecccch
Q 036360 49 EVTLHNKRDDCWIIIKNK-VYDVTSY 73 (118)
Q Consensus 49 ev~~h~~~~~~wvii~g~-VYDvt~f 73 (118)
|.-.-.++++.||.|||+ |-|+-.-
T Consensus 20 e~F~F~GDDDvWVFIn~kLv~DlGG~ 45 (90)
T TIGR02148 20 QYFEFRGDDDVWVFINNKLVVDIGGQ 45 (90)
T ss_pred cEEEEEcCCeEEEEECCEEEEEccCc
Confidence 344456888999999998 6666553
No 28
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=29.12 E-value=1.3e+02 Score=21.50 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=12.6
Q ss_pred ccCHHHHhhhcCCCCeEEEEcCee
Q 036360 44 IYSKDEVTLHNKRDDCWIIIKNKV 67 (118)
Q Consensus 44 ~~t~~ev~~h~~~~~~wvii~g~V 67 (118)
.++++|+.+-......-+.+.|.|
T Consensus 37 fy~Psel~~~~~~~G~rlR~GGlV 60 (153)
T COG2332 37 FYTPSELLEGKVETGQRLRLGGLV 60 (153)
T ss_pred EECHHHhccccccCCcEEEEeeeE
Confidence 467777777554433334444433
No 29
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=28.89 E-value=14 Score=30.54 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=23.6
Q ss_pred CeEEEEcCeeecccchhhhCCCcchhc-cccCCCc
Q 036360 58 DCWIIIKNKVYDVTSYVEEHPGGDAIL-AHAGDDS 91 (118)
Q Consensus 58 ~~wvii~g~VYDvt~f~~~HPgG~~il-~~~G~D~ 91 (118)
..++.+- -+|+..|++.||.|..++ +..|++.
T Consensus 368 ~~~laVA--c~Dige~vr~~P~gr~i~~~lg~K~~ 400 (429)
T cd00256 368 PIILAVA--CHDIGEYVRHYPRGKDVVEQLGGKQR 400 (429)
T ss_pred cceeehh--hhhHHHHHHHCccHHHHHHHcCcHHH
Confidence 3444443 489999999999999887 5566654
No 30
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=28.82 E-value=96 Score=18.25 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 036360 6 AALILGAILG 15 (118)
Q Consensus 6 ~~~~~~~~~~ 15 (118)
+.+++|.|++
T Consensus 9 IviVlgvIig 18 (55)
T PF11446_consen 9 IVIVLGVIIG 18 (55)
T ss_pred HHHHHHHHHh
Confidence 3344555555
No 31
>PRK06764 hypothetical protein; Provisional
Probab=28.47 E-value=47 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=15.0
Q ss_pred hcCCCCeEEEEcCeeec-ccch
Q 036360 53 HNKRDDCWIIIKNKVYD-VTSY 73 (118)
Q Consensus 53 h~~~~~~wvii~g~VYD-vt~f 73 (118)
.+.++...+.++|.+|| |..|
T Consensus 80 f~kpg~yvirvngciy~dvytf 101 (105)
T PRK06764 80 FSKPGKYVIRVNGCIYNDVYTF 101 (105)
T ss_pred ecCCccEEEEEccEEeeeeEEE
Confidence 35667777789999995 4544
No 32
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=27.38 E-value=22 Score=21.68 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHH
Q 036360 2 VIIVAALILGAILG 15 (118)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (118)
++|+++.++|..++
T Consensus 29 iiiflailfgftia 42 (73)
T PF07069_consen 29 IIIFLAILFGFTIA 42 (73)
T ss_pred HHHHHHHHHhhHHH
Confidence 46777777776554
No 33
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.12 E-value=58 Score=20.32 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 036360 2 VIIVAALILGAILGVFIF 19 (118)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (118)
+.+++|++.|.+.++++.
T Consensus 8 l~ivl~ll~G~~~G~fia 25 (71)
T COG3763 8 LLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777775443
No 34
>PRK11677 hypothetical protein; Provisional
Probab=26.75 E-value=74 Score=22.16 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q 036360 2 VIIVAALILGAILGVFIFIP 21 (118)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (118)
++++++++.|+++|+.+.+-
T Consensus 4 ~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677788888888665553
No 35
>PHA03049 IMV membrane protein; Provisional
Probab=26.70 E-value=1.3e+02 Score=18.60 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC
Q 036360 4 IVAALILGAILGVFIFIPRHPTS 26 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (118)
+.+|++.-+++.|-+++++....
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccC
Confidence 33444444444455666665544
No 36
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=25.91 E-value=73 Score=23.25 Aligned_cols=31 Identities=6% Similarity=-0.027 Sum_probs=17.4
Q ss_pred EcCeeecccchhhhCCCcchhccccCCCccc
Q 036360 63 IKNKVYDVTSYVEEHPGGDAILAHAGDDSTE 93 (118)
Q Consensus 63 i~g~VYDvt~f~~~HPgG~~il~~~G~D~T~ 93 (118)
+...+||.++.++..-.+..+.+|...|.|.
T Consensus 48 ~~~~~yd~~G~l~y~l~a~~~~Hy~~~~~t~ 78 (192)
T PRK10893 48 TDTVVYNPEGALSYKLVAQHVEYYSDQAVSW 78 (192)
T ss_pred cEEEEECCCCCEEEEEEecceEEcCCCCCEE
Confidence 3445666666555555555555566666555
No 37
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=23.88 E-value=26 Score=19.84 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=10.3
Q ss_pred eecccchhhhCCCc
Q 036360 67 VYDVTSYVEEHPGG 80 (118)
Q Consensus 67 VYDvt~f~~~HPgG 80 (118)
.=+++.|+..||+=
T Consensus 27 ~~~L~~WL~~~P~y 40 (46)
T PF07533_consen 27 LKELEEWLEEHPGY 40 (46)
T ss_dssp CCCHHHHHHH-TTE
T ss_pred HHHHHHHHHHCcCc
Confidence 45788999999983
No 38
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=23.45 E-value=27 Score=27.48 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCcCcCCCCccCCccCHHHHhh
Q 036360 3 IIVAALILGAILGVFIFIPRHPTSGHSKSTHSSANSNKASKIYSKDEVTL 52 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ev~~ 52 (118)
++++.++.|.|+|+.+-.+|..+...++ +..-..+-.+.+..+|+.+
T Consensus 155 I~~iLLIA~iIa~icyrrkR~GK~~~ee---~~~f~~KGiPvIF~dElee 201 (290)
T PF05454_consen 155 IAAILLIAGIIACICYRRKRKGKMSLEE---QKTFISKGIPVIFQDELEE 201 (290)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccch---hHHHHhcCCceeccccccc
Confidence 3334444555555555555555554311 2122223456777788877
No 39
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=23.43 E-value=1.2e+02 Score=22.95 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=20.9
Q ss_pred CccCHHHHhhhcCCCCeEEEEcCeee
Q 036360 43 KIYSKDEVTLHNKRDDCWIIIKNKVY 68 (118)
Q Consensus 43 ~~~t~~ev~~h~~~~~~wvii~g~VY 68 (118)
.....++|++.|.+--.|+.|.|.--
T Consensus 55 ~~~~~~~L~~~N~D~vgWi~ipgT~I 80 (232)
T TIGR03064 55 VRKQFEDLLAINSDIVGWITVPGTHI 80 (232)
T ss_pred cccCHHHHHhhCCCEEEEEEECCccc
Confidence 35678999998888778999988743
No 40
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=22.92 E-value=74 Score=19.17 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=12.6
Q ss_pred CCeEEEEcCeeecccch
Q 036360 57 DDCWIIIKNKVYDVTSY 73 (118)
Q Consensus 57 ~~~wvii~g~VYDvt~f 73 (118)
.+..|.++|++|++...
T Consensus 65 ~~~ri~~~g~~y~I~~i 81 (95)
T PF05521_consen 65 PDMRIKYDGKVYNIKSI 81 (95)
T ss_dssp TTEEEEECTEEEEE-S-
T ss_pred cceEEEECCEEEEEEEE
Confidence 34678899999999984
No 41
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=21.26 E-value=74 Score=17.62 Aligned_cols=15 Identities=53% Similarity=0.669 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 036360 4 IVAALILGAILGVFI 18 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (118)
++.++++|+++++-.
T Consensus 14 Vvma~ilglIyGlGe 28 (41)
T PF10766_consen 14 VVMALILGLIYGLGE 28 (41)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667777777543
No 42
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=21.12 E-value=50 Score=19.34 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=15.3
Q ss_pred EEEcCeeecccchhhhCCCcch
Q 036360 61 IIIKNKVYDVTSYVEEHPGGDA 82 (118)
Q Consensus 61 vii~g~VYDvt~f~~~HPgG~~ 82 (118)
|..+|++|=-..-+..||.|+.
T Consensus 23 i~~dGk~YCS~aCA~gH~~~e~ 44 (52)
T PF02069_consen 23 IQKDGKYYCSEACANGHPNGEP 44 (52)
T ss_dssp EESSS-EESSHHHHHTSSS---
T ss_pred HHhCCEeeecHHHhccCCCCCC
Confidence 5678999988888889999874
No 43
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.92 E-value=1e+02 Score=18.83 Aligned_cols=16 Identities=56% Similarity=1.113 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 036360 3 IIVAALILGAILGVFI 18 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (118)
+++++++.|++++.+.
T Consensus 2 ~iilali~G~~~Gff~ 17 (64)
T PF03672_consen 2 LIILALIVGAVIGFFI 17 (64)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556677777776443
No 44
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=20.55 E-value=30 Score=24.34 Aligned_cols=11 Identities=55% Similarity=0.966 Sum_probs=8.1
Q ss_pred hhCCCcchhcc
Q 036360 75 EEHPGGDAILA 85 (118)
Q Consensus 75 ~~HPgG~~il~ 85 (118)
.-||||.+|+.
T Consensus 64 avHPGG~~ILd 74 (151)
T PF02797_consen 64 AVHPGGRKILD 74 (151)
T ss_dssp EEE-SSHHHHH
T ss_pred eecCChHHHHH
Confidence 47999999874
No 45
>PF14756 Pdase_C33_assoc: Peptidase_C33-associated domain
Probab=20.43 E-value=51 Score=22.82 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=22.5
Q ss_pred CHHHHhhhcCCCCeEEEEcCeeecccchhhhCCCcc
Q 036360 46 SKDEVTLHNKRDDCWIIIKNKVYDVTSYVEEHPGGD 81 (118)
Q Consensus 46 t~~ev~~h~~~~~~wvii~g~VYDvt~f~~~HPgG~ 81 (118)
-++-++++.++-+.-..---.|+-|+.|...|-||+
T Consensus 30 ipaalaems~d~~rp~sp~ttvwtvsqf~arh~gg~ 65 (147)
T PF14756_consen 30 IPAALAEMSGDPNRPASPVTTVWTVSQFFARHRGGE 65 (147)
T ss_pred hHHHHHHhcCCCCCCCCcccceeeHHHHHHHhcCCC
Confidence 345566655544322222345788999999999984
No 46
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.16 E-value=96 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 036360 3 IIVAALILGAILGVFIFIPRH 23 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (118)
+.++|++||+++++.+-...+
T Consensus 11 irIiaff~A~~Lfl~vn~~n~ 31 (403)
T COG4856 11 IRIIAFFFAILLFLYVNNNNF 31 (403)
T ss_pred HHHHHHHHHHHhheeeccccc
Confidence 456778888888866555444
No 47
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.06 E-value=1e+02 Score=20.97 Aligned_cols=16 Identities=31% Similarity=0.604 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 036360 5 VAALILGAILGVFIFI 20 (118)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (118)
.+++++|+++++.+.+
T Consensus 3 ~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666655433
No 48
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=20.01 E-value=76 Score=18.48 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.5
Q ss_pred CeEEEEcCeeecccchhhhCCCc
Q 036360 58 DCWIIIKNKVYDVTSYVEEHPGG 80 (118)
Q Consensus 58 ~~wvii~g~VYDvt~f~~~HPgG 80 (118)
...|.++|..|-|.++....||.
T Consensus 8 G~~i~~~g~~~~V~~~~~~k~gk 30 (58)
T PF08207_consen 8 GMVIEIDGEPYVVLDFQHVKPGK 30 (58)
T ss_dssp TSEEEETTEEEEEEEEEEECCTT
T ss_pred CCEEEECCEEEEEEEEEEECCCC
Confidence 45788999999999996666663
Done!