BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036361
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 165/489 (33%), Positives = 252/489 (51%), Gaps = 31/489 (6%)
Query: 5 LPNHANSTPLTTLGFLERAATAY--SDCPSIVYNNTTY--TWSETHRRCLQVASSLSSVG 60
P+ L FLERAA + + S ++ + T++E ++R ++ L ++G
Sbjct: 9 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 68
Query: 61 IQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHNLSVLLQHSESKLVFVDHL 120
+ G V+ + N E F VP GA+L+ N RL ++ +L H+E K++ D
Sbjct: 69 VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN 128
Query: 121 HSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYK 180
LV EA+ + + H V+ ++ E EE DP
Sbjct: 129 LLPLV-EAIRGELKTVQ--HFVVMDEKAPEG------------YLAYEEALGEEADP--- 170
Query: 181 WVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILT-ANALIDW-AVPKQPVYLWTLPM 238
VR E + YT+GTT PKGVV+SHR + + + A +L+D A+ ++ V L +PM
Sbjct: 171 -VR-VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 228
Query: 239 FHANGWGYTWGMAAVGATNICLR-RFDASAISDLIQKHNVTHMCGAPVVLNMISNSPDF- 296
FH N W + VGA + R D +++ +L VT G P V +++ +
Sbjct: 229 FHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST 288
Query: 297 -EPLKTPVQILTAGAPPPAPVLSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLE 355
LKT +++ G+ P +++R E MG V GYGLTET+ +VV K + L E
Sbjct: 289 GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 348
Query: 356 ERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRR 415
E+ LKA+ G+ + L + V + E G V +DG +LGEV L+G +T GY+ ++E+TR
Sbjct: 349 EKLTLKAKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 406
Query: 416 CISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVV 475
++ +G+F TGDIAV +GYVEIKDR KD+I SGGE I S ++E+ L + V EAAVV
Sbjct: 407 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 476 ARPDKFWGE 484
A P W E
Sbjct: 467 AIPHPKWQE 475
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 206/460 (44%), Gaps = 57/460 (12%)
Query: 36 NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN 95
+ T+++ + + A L+++GI +G V+++ PN L +G GA+ IN
Sbjct: 40 TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPIN 99
Query: 96 TRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXX 155
TRL A +S +L S SK+V + S+ V++A+ R P +
Sbjct: 100 TRLAAPEVSFILSDSGSKVV-IYGAPSAPVIDAI----RAQADPPGTVTDWIGADSLAER 154
Query: 156 XXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIFI 215
E VE G D + + YTSGTT PKGVVH+H +
Sbjct: 155 LRSAAAD------EPAVECGGD-----------DNLFIMYTSGTTGHPKGVVHTHESVH- 196
Query: 216 LTANALIDWA----VPKQPVYLWTLPMFHANGWGYTWGMAAVGATNICLRRFDASAISDL 271
+A WA V + L LPMFH A G T I + +FDA+ + L
Sbjct: 197 ---SAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL 253
Query: 272 IQKHNVTHMCGAPVVLNMISNSPDFEPLKTP--VQILTAGAPPPAPVLSRTESMGFVVCH 329
I + V P +LN + P+F L P +T GAP P ++ + V
Sbjct: 254 IVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQ 313
Query: 330 GYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEV-----DVVNPETGES 384
GY LTE+ G L L E A KA + T+V D V E GE
Sbjct: 314 GYALTESCG----------GGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE- 362
Query: 385 VKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSK 444
GEVV++ + Y+ E+TR DNGWF TGDI + +GY+ IKDR K
Sbjct: 363 --------GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLK 413
Query: 445 DVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
D+IISGGEN+ AE+ESV+ V+E AV+ PD+ WGE
Sbjct: 414 DMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGE 453
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/462 (27%), Positives = 207/462 (44%), Gaps = 46/462 (9%)
Query: 36 NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN 95
N YT+++ +VAS L+ +GIQ+G V+ + P+ P G GAI+ N
Sbjct: 46 NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAAN 105
Query: 96 TRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXX 155
L+ + S +KL+ + E + F R++ + +
Sbjct: 106 PFSTPAELAKHAKASRAKLLITQACY----YEKVKDFARESDVKVMCVDSAP-------- 153
Query: 156 XXXXXXXXFIDTYEGFVE--EGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGI 213
D F E + D S D + L Y+SGTT PKGV+ +H+G+
Sbjct: 154 ----------DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGL 203
Query: 214 FILTANALIDWAVPK-----QPVYLWTLPMFHANGWGYTW--GMAAVGATNICLRRFDAS 266
A +D P + V L LPMFH G+ VGA + + +F+
Sbjct: 204 ITSVAQQ-VDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLR-VGAPILIMPKFEIG 261
Query: 267 AISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLK-TPVQILTAGAPPPAPVLSRTESMGF 325
++ LI+K+ V+ P V+ I+ SPD + + ++++ +G P L T F
Sbjct: 262 SLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKF 321
Query: 326 ---VVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDVVNPETG 382
+ GYG+TE ++ C + K P + +K V E+ +V+PETG
Sbjct: 322 PQARLGQGYGMTEAGPVLAMCLA---FAKEPFD----IKPGACGTVVRNAEMKIVDPETG 374
Query: 383 ESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDR 442
S+ R+ GE+ +RG + GY D E+T R I GW +TGDI + D + I DR
Sbjct: 375 ASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432
Query: 443 SKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
K++I G + AE+E++L ++ +++AAVV D+ GE
Sbjct: 433 LKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGE 474
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 175/417 (41%), Gaps = 57/417 (13%)
Query: 36 NNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNIN 95
+ T+++ + + A L+++GI +G V+++ PN L +G GA+ IN
Sbjct: 26 TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPIN 85
Query: 96 TRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXX 155
TRL A +S +L S SK+V + S+ V++A+ R P +
Sbjct: 86 TRLAAPEVSFILSDSGSKVV-IYGAPSAPVIDAI----RAQADPPGTVTDWIGADSLAER 140
Query: 156 XXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIFI 215
E VE G D + + YTSGTT PKGVVH+H +
Sbjct: 141 LRSAAAD------EPAVECGGD-----------DNLFIMYTSGTTGHPKGVVHTHESVH- 182
Query: 216 LTANALIDWA----VPKQPVYLWTLPMFHANGWGYTWGMAAVGATNICLRRFDASAISDL 271
+A WA V + L LPMFH A G T I + +FDA+ + L
Sbjct: 183 ---SAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL 239
Query: 272 IQKHNVTHMCGAPVVLNMISNSPDFEPLKTP--VQILTAGAPPPAPVLSRTESMGFVVCH 329
I + V P +LN + P+F L P +T GAP P ++ + V
Sbjct: 240 IVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQ 299
Query: 330 GYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEV-----DVVNPETGES 384
GY LTE+ G L L E A KA + T+V D V E GE
Sbjct: 300 GYALTESCG----------GGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE- 348
Query: 385 VKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKD 441
GEVV++ + Y+ E+TR DNGWF TGDI + +GY+ IKD
Sbjct: 349 --------GEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/477 (24%), Positives = 191/477 (40%), Gaps = 60/477 (12%)
Query: 21 ERAATAYSDCPSIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYEL 80
R A + D + + + T + R ++AS L G+ G V++++ N M EL
Sbjct: 13 RRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIEL 72
Query: 81 QFGVPMSGAILNNINTRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPH 140
V + GAIL +N RL+A ++ +L +V + +V L P
Sbjct: 73 IGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL---------PS 123
Query: 141 LVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTT 200
L DT E G D V+ +T+
Sbjct: 124 LGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEFG-----------AADGFVIIHTAAVG 172
Query: 201 SSPKGVVHSHRGIFILTANALIDWAVPKQPVYLWTLPMFHANGWGYTWGMAAVGATNICL 260
P+G + S + I ++ + W + + V L LP+FH G G + G ++
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232
Query: 261 RRFDASAISDLIQKHNVTHMCG-APVVLNMISNSPDFE--------PLKTPVQILTAGAP 311
+FD + + I+ H VT M AP++ N++ + + L TP I A
Sbjct: 233 AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPETIERFEAT 292
Query: 312 PPAPVLSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGV-KTVG 370
P T +G +ET+GL P +R + R +TV
Sbjct: 293 CPNATFWAT----------FGQSETSGLSTFA---------PYRDRPKSAGRPLFWRTVA 333
Query: 371 LTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAV 430
+ + + GE +GE+VLRG V GY+ + +T+ NGW +TGD+
Sbjct: 334 VVDAEDRPLPPGE--------VGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGR 384
Query: 431 MHVDGYVEIKDRS--KDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGET 485
DGY+ R+ K++I +GGEN+ AEVE L + A+ +A V+ PD W E
Sbjct: 385 FDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEA 441
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 124/501 (24%), Positives = 220/501 (43%), Gaps = 51/501 (10%)
Query: 2 ELLLPNHANSTPLTTLGFLERAATAYSDCPSIVYNNT--TYTWSETHRRCLQVASSLSSV 59
++ +PNH L+ ++ + + ++ P ++ T YT+S+ H Q+A++ +
Sbjct: 54 DIYIPNH-----LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKL 108
Query: 60 GIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHNLSVLLQHSESKLV---- 115
G+ + VV ++ PN P GA N ++ + S +KL+
Sbjct: 109 GVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEA 168
Query: 116 -FVDHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEE 174
+VD + + + + D V ID+ E
Sbjct: 169 RYVDKIKPLQNDDGVVIVCIDDNES--VPIPEGCLRFTELTQSTTEASEVIDSVE----- 221
Query: 175 GDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPK-----Q 229
+ P D + L Y+SGTT PKGV+ +H+G+ A +D P
Sbjct: 222 -------ISPD---DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ-VDGENPNLYFHSD 270
Query: 230 PVYLWTLPMFHANGWGYTW--GMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVL 287
V L LPMFH G+ VGA + + +F+ + + +LIQ+ VT P ++
Sbjct: 271 DVILCVLPMFHIYALNSIMLCGLR-VGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 329
Query: 288 NMISNSPDFEPLK-TPVQILTAGAPPPAPVLSRTESMGF---VVCHGYGLTETAGLVVSC 343
I+ S + E + ++++ +GA P L + F + GYG+TE AG V++
Sbjct: 330 LAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAM 388
Query: 344 SWKPEWDKLPLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVT 403
S + P+ K+ V E+ +V+P+TG+S+ R+ GE+ +RG +
Sbjct: 389 SLGFAKEPFPV------KSGACGTVVRNAEMKIVDPDTGDSLSRN--QPGEICIRGHQIM 440
Query: 404 VGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVL 463
GY + +T I +GW +TGDI ++ D + I DR K++I G + AE+E++L
Sbjct: 441 KGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALL 500
Query: 464 YSNTAVNEAAVVARPDKFWGE 484
+ + + AVVA ++ GE
Sbjct: 501 IGHPDITDVAVVAMKEEAAGE 521
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 134/294 (45%), Gaps = 29/294 (9%)
Query: 195 YTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVYLWTLPMFHANGWGYTWGMAAVG 254
+TSGTT K V + R + + +L LP++H +G G
Sbjct: 170 FTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEG 229
Query: 255 ATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLKTPVQILTAGAPPPA 314
T + +F+A I +I+ +TH+ P LN + EP +IL GA A
Sbjct: 230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQ-KILLGGAKLSA 288
Query: 315 PVLSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGL--- 371
++ + + +G+TET ++ + PE L AR TVG+
Sbjct: 289 TMIETALQYNLPIYNSFGMTETCSQFLTAT--PEM----------LHARP--DTVGMPSA 334
Query: 372 -TEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAV 430
+V + NP ++G GE++++G V GY + T +NG+F TGDIA
Sbjct: 335 NVDVKIKNP------NKEG--HGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAE 384
Query: 431 MHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
+ +GYV I DR KD+IISGGENI ++E+V +++A V PD WG+
Sbjct: 385 IDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 142/310 (45%), Gaps = 32/310 (10%)
Query: 185 RSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANAL--ID-WAVPKQPVYLWTLPMFHA 241
R D + YTSGTT KG SH L +N+L +D W V + LP++H
Sbjct: 152 RGADDLAAILYTSGTTGRSKGAXLSHDN---LASNSLTLVDYWRFTPDDVLIHALPIYHT 208
Query: 242 NGWGYTWGMAAVG-ATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLK 300
+G + + I L +FD I DL + V + G P + SP
Sbjct: 209 HGLFVASNVTLFARGSXIFLPKFDPDKILDLXARATV--LXGVPTFYTRLLQSPRLTKET 266
Query: 301 TP-VQILTAGAPPPAPVLSRTE-----SMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPL 354
T ++ +G+ AP+L+ T G V YG TET + S + D++P
Sbjct: 267 TGHXRLFISGS---APLLADTHREWSAKTGHAVLERYGXTETN---XNTSNPYDGDRVP- 319
Query: 355 EERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTR 414
A A GV V +PETG+ + R +G + ++G V GY++ E T+
Sbjct: 320 --GAVGPALPGV------SARVTDPETGKELPRG--DIGXIEVKGPNVFKGYWRXPEKTK 369
Query: 415 RCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAV 474
D+G+F TGD+ + GYV I R KD++I+GG N+ E+ES + + V E+AV
Sbjct: 370 SEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAV 429
Query: 475 VARPDKFWGE 484
+ P +GE
Sbjct: 430 IGVPHADFGE 439
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 41 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 100
+++E R +VA+ L + G+Q G V+ L +G + +NT
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 101 HNLSVLLQHSESKLVFVD 118
H L + +E K+V D
Sbjct: 90 HELDYFITDAEPKIVVCD 107
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 114/491 (23%), Positives = 198/491 (40%), Gaps = 62/491 (12%)
Query: 20 LERAATAYSDCPSIV-----YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 74
L +A Y+ P + + T+SE ++A ++ G+ H ++V + N
Sbjct: 60 LHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN- 118
Query: 75 PSMYELQFGVPMSGAILNNI-----NTRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEAL 129
LQF +P+ GA+ + N + L L S+ +VF +L
Sbjct: 119 ----SLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQ 174
Query: 130 SLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWV---RPRS 186
P ++ FI+++ + G +Y ++ R
Sbjct: 175 KKLP--------IIQKIVILDSREDYMGKQSMYSFIESH---LPAGFNEYDYIPDSFDRE 223
Query: 187 EWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANA----LIDWAVPKQPVYLWTLPMFHAN 242
+++N +SG+T PKGV +H+ I + ++ + +P + L +P H
Sbjct: 224 TATALIMN-SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAI-LTVIPFHHGF 281
Query: 243 GWGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSP--DFEPLK 300
G T G G + + RF+ +Q + + P + + + S D L
Sbjct: 282 GMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLS 341
Query: 301 TPVQILTAGAPPPA----PVLSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEE 356
+I + GAP V R + G + GYGLTET ++ +
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPG--IRQGYGLTETTSAII------------ITP 387
Query: 357 RARLKARQGV--KTVGLTEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKEST 413
R R + G K V +V+ +TG+++ GV+ GE+ ++G + GY + E+T
Sbjct: 388 RGR-DDKPGACGKVVPFFSAKIVDLDTGKTL---GVNQRGELCVKGPMIMKGYVNNPEAT 443
Query: 414 RRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAA 473
I +GW ++GDIA DGY I DR K +I G + AE+ES+L + + +A
Sbjct: 444 SALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAG 503
Query: 474 VVARPDKFWGE 484
V PD GE
Sbjct: 504 VAGIPDPDAGE 514
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 142/311 (45%), Gaps = 29/311 (9%)
Query: 186 SEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANALID-WAVPKQPVYLWTLPMFHANGW 244
+ DP ++ YTSGTT PKG V R + T +AL D W + V + LP+FH +G
Sbjct: 153 DDGDPALVVYTSGTTGPPKGAVIPRRALAT-TLDALADAWQWTGEDVLVQGLPLFHVHGL 211
Query: 245 GY-TWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNS----PDFEPL 299
G G + L RF + + T + G P + + I+ + P+
Sbjct: 212 VLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAKA 270
Query: 300 KTPVQILTAGAPPPAPVLSRTE---SMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEE 356
++L +G+ PV + G V YG+TET +++ S
Sbjct: 271 LAGARLLVSGSAA-LPVHDHERIAAATGRRVIERYGMTET---LMNTSV----------- 315
Query: 357 RARLKARQGVKTVGL--TEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTR 414
RA + R G V L E+ +V + DG S+GE+ +RG + Y ++T
Sbjct: 316 RADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATA 375
Query: 415 RCISDNGWFYTGDIAVMHVDGYVEIKDR-SKDVIISGGENICSAEVESVLYSNTAVNEAA 473
+++G+F TGD+AV DGYV I R + D+I SGG I + E+E+ L + V EAA
Sbjct: 376 AAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAA 435
Query: 474 VVARPDKFWGE 484
V PD GE
Sbjct: 436 VTGEPDPDLGE 446
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 117/493 (23%), Positives = 197/493 (39%), Gaps = 67/493 (13%)
Query: 20 LERAATAYSDCPSIV-----YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 74
L +A Y+ P + + T++E +++A ++ G+ H + V + N
Sbjct: 31 LHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN- 89
Query: 75 PSMYELQFGVPMSGAILNNINTRL--DAHNLSVLLQH---SESKLVFVDHLHSSLVLEAL 129
LQF +P+ GA+ + D +N LL S+ +VFV +L
Sbjct: 90 ----SLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ 145
Query: 130 SLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWD 189
P ++ F+ ++ + G +Y +V + D
Sbjct: 146 KKLP--------IIQKIIIMDSKTDYQGFQSMYTFVTSH---LPPGFNEYDFVPESFDRD 194
Query: 190 P---MVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVY----------LWTL 236
+++N +SG+T PKGV HR A + ++ + P++ L +
Sbjct: 195 KTIALIMN-SSGSTGLPKGVALPHR-------TACVRFSHARDPIFGNQIIPDTAILSVV 246
Query: 237 PMFHANGWGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSP-- 294
P H G T G G + + RF+ +Q + + P + + + S
Sbjct: 247 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI 306
Query: 295 DFEPLKTPVQILTAGAPPPAPVLSRTESMGFV--VCHGYGLTETAGLVVSCSWKPEWDKL 352
D L +I + GAP V + + GYGLTET ++ PE D
Sbjct: 307 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT---PEGDDK 363
Query: 353 PLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKE 411
P G K V E VV+ +TG+++ GV+ GE+ +RG + GY + E
Sbjct: 364 P--------GAVG-KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPE 411
Query: 412 STRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNE 471
+T I +GW ++GDIA D + I DR K +I G + AE+ES+L + + +
Sbjct: 412 ATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFD 471
Query: 472 AAVVARPDKFWGE 484
A V PD GE
Sbjct: 472 AGVAGLPDDDAGE 484
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 117/493 (23%), Positives = 197/493 (39%), Gaps = 67/493 (13%)
Query: 20 LERAATAYSDCPSIV-----YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 74
L +A Y+ P + + T++E +++A ++ G+ H + V + N
Sbjct: 26 LHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN- 84
Query: 75 PSMYELQFGVPMSGAILNNINTRL--DAHNLSVLLQH---SESKLVFVDHLHSSLVLEAL 129
LQF +P+ GA+ + D +N LL S+ +VFV +L
Sbjct: 85 ----SLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ 140
Query: 130 SLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWD 189
P ++ F+ ++ + G +Y +V + D
Sbjct: 141 KKLP--------IIQKIIIMDSKTDYQGFQSMYTFVTSH---LPPGFNEYDFVPESFDRD 189
Query: 190 P---MVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVY----------LWTL 236
+++N +SG+T PKGV HR A + ++ + P++ L +
Sbjct: 190 KTIALIMN-SSGSTGLPKGVALPHR-------TACVRFSHARDPIFGNQIIPDTAILSVV 241
Query: 237 PMFHANGWGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSP-- 294
P H G T G G + + RF+ +Q + + P + + + S
Sbjct: 242 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI 301
Query: 295 DFEPLKTPVQILTAGAPPPAPVLSRTESMGFV--VCHGYGLTETAGLVVSCSWKPEWDKL 352
D L +I + GAP V + + GYGLTET ++ PE D
Sbjct: 302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT---PEGDDK 358
Query: 353 PLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKE 411
P G K V E VV+ +TG+++ GV+ GE+ +RG + GY + E
Sbjct: 359 P--------GAVG-KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPE 406
Query: 412 STRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNE 471
+T I +GW ++GDIA D + I DR K +I G + AE+ES+L + + +
Sbjct: 407 ATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFD 466
Query: 472 AAVVARPDKFWGE 484
A V PD GE
Sbjct: 467 AGVAGLPDDDAGE 479
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 117/493 (23%), Positives = 197/493 (39%), Gaps = 67/493 (13%)
Query: 20 LERAATAYSDCPSIV-----YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 74
L +A Y+ P + + T++E +++A ++ G+ H + V + N
Sbjct: 26 LHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN- 84
Query: 75 PSMYELQFGVPMSGAILNNINTRL--DAHNLSVLLQH---SESKLVFVDHLHSSLVLEAL 129
LQF +P+ GA+ + D +N LL S+ +VFV +L
Sbjct: 85 ----SLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ 140
Query: 130 SLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWD 189
P ++ F+ ++ + G +Y +V + D
Sbjct: 141 KKLP--------IIQKIIIMDSKTDYQGFQSMYTFVTSH---LPPGFNEYDFVPESFDRD 189
Query: 190 P---MVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVY----------LWTL 236
+++N +SG+T PKGV HR A + ++ + P++ L +
Sbjct: 190 KTIALIMN-SSGSTGLPKGVALPHR-------TACVRFSHARDPIFGNQIIPDTAILSVV 241
Query: 237 PMFHANGWGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSP-- 294
P H G T G G + + RF+ +Q + + P + + + S
Sbjct: 242 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI 301
Query: 295 DFEPLKTPVQILTAGAPPPAPVLSRTESMGFV--VCHGYGLTETAGLVVSCSWKPEWDKL 352
D L +I + GAP V + + GYGLTET ++ PE D
Sbjct: 302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT---PEGDDK 358
Query: 353 PLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKE 411
P G K V E VV+ +TG+++ GV+ GE+ +RG + GY + E
Sbjct: 359 P--------GAVG-KVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPE 406
Query: 412 STRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNE 471
+T I +GW ++GDIA D + I DR K +I G + AE+ES+L + + +
Sbjct: 407 ATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFD 466
Query: 472 AAVVARPDKFWGE 484
A V PD GE
Sbjct: 467 AGVAGLPDDDAGE 479
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 142/315 (45%), Gaps = 38/315 (12%)
Query: 185 RSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVY----------LW 234
R E +++N +SG+T PKGV +H I ++A + P+Y L
Sbjct: 190 RKEQVALIMN-SSGSTGLPKGVQLTHENIVTRFSHA-------RDPIYGNQVSPGTAVLT 241
Query: 235 TLPMFHANGWGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSP 294
+P H G T G G + L +FD +Q + T++ P + +++ S
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSE 301
Query: 295 DFEP--LKTPVQILTAGAPPPAPV---LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEW 349
L V+I + GAP V ++R ++ V GYGLTET ++ PE
Sbjct: 302 LLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGV-RQGYGLTETTSAII---ITPEG 357
Query: 350 DKLPLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKD 409
D P G K V L + V++ +T +S+ + GEV ++G + GY +
Sbjct: 358 DDKP--------GASG-KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNN 406
Query: 410 KESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAV 469
E+T+ I + GW +TGDI + + I DR K +I G + AE+ESVL + ++
Sbjct: 407 PEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSI 466
Query: 470 NEAAVVARPDKFWGE 484
+A V PD GE
Sbjct: 467 FDAGVAGVPDPVAGE 481
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 141/315 (44%), Gaps = 38/315 (12%)
Query: 185 RSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVY----------LW 234
R E +++N +SG+T PKGV +H I ++A + P+Y L
Sbjct: 190 RKEQVALIMN-SSGSTGLPKGVQLTHENIVTRFSHA-------RDPIYGNQVSPGTAVLT 241
Query: 235 TLPMFHANGWGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSP 294
+P H G T G G + L +FD +Q + T + P + +++ S
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301
Query: 295 DFEP--LKTPVQILTAGAPPPAPV---LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEW 349
L V+I + GAP V ++R ++ V GYGLTET ++ PE
Sbjct: 302 LLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGV-RQGYGLTETTSAII---ITPEG 357
Query: 350 DKLPLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKD 409
D P G K V L + V++ +T +S+ + GEV ++G + GY +
Sbjct: 358 DDKP--------GASG-KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNN 406
Query: 410 KESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAV 469
E+T+ I + GW +TGDI + + I DR K +I G + AE+ESVL + ++
Sbjct: 407 PEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSI 466
Query: 470 NEAAVVARPDKFWGE 484
+A V PD GE
Sbjct: 467 FDAGVAGVPDPVAGE 481
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 141/315 (44%), Gaps = 38/315 (12%)
Query: 185 RSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVY----------LW 234
R E +++N +SG+T PKGV +H I ++A + P+Y L
Sbjct: 190 RKEQVALIMN-SSGSTGLPKGVQLTHENIVTRFSHA-------RDPIYGNQVSPGTAVLT 241
Query: 235 TLPMFHANGWGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSP 294
+P H G T G G + L +FD +Q + T + P + +++ S
Sbjct: 242 VVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301
Query: 295 DFEP--LKTPVQILTAGAPPPAPV---LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEW 349
L V+I + GAP V ++R ++ V GYGLTET ++ PE
Sbjct: 302 LLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGV-RQGYGLTETTSAII---ITPEG 357
Query: 350 DKLPLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKD 409
D P G K V L + V++ +T +S+ + GEV ++G + GY +
Sbjct: 358 DDKP--------GASG-KVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNN 406
Query: 410 KESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAV 469
E+T+ I + GW +TGDI + + I DR K +I G + AE+ESVL + ++
Sbjct: 407 PEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSI 466
Query: 470 NEAAVVARPDKFWGE 484
+A V PD GE
Sbjct: 467 FDAGVAGVPDPVAGE 481
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 197/486 (40%), Gaps = 53/486 (10%)
Query: 20 LERAATAYSDCPSIV-----YNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 74
L +A Y+ P + + T++E +++A ++ G+ H + V + N
Sbjct: 31 LHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSEN- 89
Query: 75 PSMYELQFGVPMSGAILNNINTRL--DAHNLSVLLQH---SESKLVFVDHLHSSLVLEAL 129
LQF +P+ GA+ + D +N LL S+ +VFV +L
Sbjct: 90 ----SLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQ 145
Query: 130 SLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWD 189
P ++ F+ ++ + G +Y +V + D
Sbjct: 146 KKLP--------IIQKIIIMDSKTDYQGFQSMYTFVTSH---LPPGFNEYDFVPESFDRD 194
Query: 190 P---MVLNYTSGTTSSPKGVVHSHRGIFILTANA---LIDWAVPKQPVYLWTLPMFHANG 243
+++N +SG+T PKGV HR + + ++A + + L +P H G
Sbjct: 195 KTIALIMN-SSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFG 253
Query: 244 WGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSP--DFEPLKT 301
T G G + + RF+ +Q + + P + + ++ S D L
Sbjct: 254 MFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSN 313
Query: 302 PVQILTAGAPPPAPVLSRTESMGFV--VCHGYGLTETAGLVVSCSWKPEWDKLPLEERAR 359
+I + GAP V + + GYGLTET ++ P+ D P
Sbjct: 314 LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT---PKGDDKP------ 364
Query: 360 LKARQGVKTVGLTEVDVVNPETGESVKRDGVSL-GEVVLRGGCVTVGYFKDKESTRRCIS 418
G K V E VV+ +TG+++ GV+ GE+ +RG + GY + E+T I
Sbjct: 365 --GAVG-KVVPFFEAKVVDLDTGKTL---GVNQRGELSVRGPMIMSGYVNNPEATNALID 418
Query: 419 DNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARP 478
+GW ++GDIA D + I DR K +I G + AE+ES+L + + +A V P
Sbjct: 419 KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLP 478
Query: 479 DKFWGE 484
D GE
Sbjct: 479 DDDAGE 484
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 141/310 (45%), Gaps = 32/310 (10%)
Query: 185 RSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANAL--ID-WAVPKQPVYLWTLPMFHA 241
R D + YTSGTT G + SH L +N+L +D W V + LP++H
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDN---LASNSLTLVDYWRFTPDDVLIHALPIYHT 208
Query: 242 NGWGYTWGMAAVG-ATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLK 300
+G + + I L FD I DL+ + V + G P + SP
Sbjct: 209 HGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXET 266
Query: 301 TP-VQILTAGAPPPAPVLSRTE-----SMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPL 354
T +++ +G+ AP+L+ T G V YG+TET ++ S + D++P
Sbjct: 267 TGHMRLFISGS---APLLADTHREWSAXTGHAVLERYGMTETN---MNTSNPYDGDRVP- 319
Query: 355 EERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTR 414
A A GV V +PETG + R + + EV G V GY++ E T
Sbjct: 320 --GAVGPALPGVSA------RVTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTX 369
Query: 415 RCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAV 474
D+G+F TGD+ + GYV I R D++I+GG N+ E+ES + + V E+AV
Sbjct: 370 SEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAV 429
Query: 475 VARPDKFWGE 484
+ P +GE
Sbjct: 430 IGVPHADFGE 439
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 141/310 (45%), Gaps = 32/310 (10%)
Query: 185 RSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANAL--ID-WAVPKQPVYLWTLPMFHA 241
R D + YTSGTT G + SH L +N+L +D W V + LP++H
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDN---LASNSLTLVDYWRFTPDDVLIHALPIYHT 208
Query: 242 NGWGYTWGMAAVG-ATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLK 300
+G + + I L FD I DL+ + V + G P + SP
Sbjct: 209 HGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXET 266
Query: 301 TP-VQILTAGAPPPAPVLSRTE-----SMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPL 354
T +++ +G+ AP+L+ T G V YG+TET ++ S + D++P
Sbjct: 267 TGHMRLFISGS---APLLADTHREWSAXTGHAVLERYGMTETN---MNTSNPYDGDRVP- 319
Query: 355 EERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTR 414
A A GV V +PETG + R + + EV G V GY++ E T
Sbjct: 320 --GAVGPALPGVSA------RVTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTX 369
Query: 415 RCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAV 474
D+G+F TGD+ + GYV I R D++I+GG N+ E+ES + + V E+AV
Sbjct: 370 SEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAV 429
Query: 475 VARPDKFWGE 484
+ P +GE
Sbjct: 430 IGVPHADFGE 439
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 141/310 (45%), Gaps = 32/310 (10%)
Query: 185 RSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANAL--ID-WAVPKQPVYLWTLPMFHA 241
R D + YTSGTT G + SH L +N+L +D W V + LP++H
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDN---LASNSLTLVDYWRFTPDDVLIHALPIYHT 208
Query: 242 NGWGYTWGMAAVG-ATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLK 300
+G + + I L FD I DL+ + V + G P + SP
Sbjct: 209 HGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATV--LMGVPTFYTRLLQSPRLTXET 266
Query: 301 TP-VQILTAGAPPPAPVLSRTE-----SMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPL 354
T +++ +G+ AP+L+ T G V YG+TET ++ S + D++P
Sbjct: 267 TGHMRLFISGS---APLLADTHREWSAXTGHAVLERYGMTETN---MNTSNPYDGDRVP- 319
Query: 355 EERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTR 414
A A GV V +PETG + R + + EV G V GY++ E T
Sbjct: 320 --GAVGPALPGVSA------RVTDPETGXELPRGDIGMIEVX--GPNVFXGYWRMPEXTX 369
Query: 415 RCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAV 474
D+G+F TGD+ + GYV I R D++I+GG N+ E+ES + + V E+AV
Sbjct: 370 SEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAV 429
Query: 475 VARPDKFWGE 484
+ P +GE
Sbjct: 430 IGVPHADFGE 439
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 121/488 (24%), Positives = 192/488 (39%), Gaps = 72/488 (14%)
Query: 19 FLERAATAYSD-CP-SIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 76
L RAAT D C ++ T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELQFGVPMSGAILNNINTRLDAHNLSVLLQHSE--SKLVFVDHLHSSLVLEALSLFPR 134
+ + GA+ +N RL + L+ L++ E + ++ V + + ++ S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS---- 122
Query: 135 DTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRP-----RSEWD 189
I V +G+P Y + P R
Sbjct: 123 ---------------------------GARIIFLGDLVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMVLNYTSGTTSSPKGVVHSHRGI--FILTANALIDWAVPKQPVYLWTLPMFHANGWGYT 247
P + YTSGTT PK + R +L + + + V L +P++H G+
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 248 WGMA-AVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMI-------SNSPDFEPL 299
A A+ T + + F L+Q+ VT + P L+ + +S + L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 300 KTPVQILTAGAPPPAPVLSRT-ESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLP-LEER 357
+ + AGA P VL + + +GYG TE + K + P
Sbjct: 275 R---HVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 358 ARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCI 417
R+ V+ G + V N E GE + V VGY ++T +
Sbjct: 332 VRI-----VRIGGGVDEIVANGEEGELI----------VAASDSAFVGYLNQPQATAEKL 376
Query: 418 SDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVAR 477
D GW+ T D+AV +G V I R D+IISGGENI +E+E VL + V E V+
Sbjct: 377 QD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 478 PDKFWGET 485
D+ WG++
Sbjct: 436 ADQRWGQS 443
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 121/488 (24%), Positives = 191/488 (39%), Gaps = 72/488 (14%)
Query: 19 FLERAATAYSD-CP-SIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 76
L RAAT D C ++ T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELQFGVPMSGAILNNINTRLDAHNLSVLLQHSE--SKLVFVDHLHSSLVLEALSLFPR 134
+ + GA+ +N RL + L+ L++ E + ++ V + + ++ S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS---- 122
Query: 135 DTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRP-----RSEWD 189
I V +G+P Y + P R
Sbjct: 123 ---------------------------GARIIFLGDLVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMVLNYTSGTTSSPKGVVHSHRGI--FILTANALIDWAVPKQPVYLWTLPMFHANGWGYT 247
P + YTSGTT PK + R +L + + + V L +P++H G+
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 248 WGMA-AVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMI-------SNSPDFEPL 299
A A+ T + + F L+Q+ VT + P L+ + +S + L
Sbjct: 215 LVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 300 KTPVQILTAGAPPPAPVLSRT-ESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLP-LEER 357
+ + AGA P VL + + + YG TE + K + P
Sbjct: 275 R---HVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 358 ARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCI 417
R+ V+ G + V N E GE + V VGY E+T +
Sbjct: 332 VRI-----VRIGGGVDEIVANGEEGELI----------VAASDSAFVGYLNQPEATAEKL 376
Query: 418 SDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVAR 477
D GW+ T D+AV +G V I R D+IISGGENI +E+E VL + V E V+
Sbjct: 377 QD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 478 PDKFWGET 485
D+ WG++
Sbjct: 436 ADQRWGQS 443
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 120/488 (24%), Positives = 191/488 (39%), Gaps = 72/488 (14%)
Query: 19 FLERAATAYSD-CP-SIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 76
L RAAT D C ++ T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELQFGVPMSGAILNNINTRLDAHNLSVLLQHSE--SKLVFVDHLHSSLVLEALSLFPR 134
+ + GA+ +N RL + L+ L++ E + ++ V + + ++ S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS---- 122
Query: 135 DTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRP-----RSEWD 189
I V +G+P Y + P R
Sbjct: 123 ---------------------------GARIIFLGDLVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMVLNYTSGTTSSPKGVVHSHRGI--FILTANALIDWAVPKQPVYLWTLPMFHANGWGYT 247
P + YTSGTT PK + R +L + + + V L +P++H G+
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 248 WGMA-AVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMI-------SNSPDFEPL 299
A A+ T + + F L+Q+ VT + P L+ + +S + L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 300 KTPVQILTAGAPPPAPVLSRT-ESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLP-LEER 357
+ + AGA P VL + + + YG TE + K + P
Sbjct: 275 R---HVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 358 ARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCI 417
R+ V+ G + V N E GE + V VGY ++T +
Sbjct: 332 VRI-----VRIGGGVDEIVANGEEGELI----------VAASDSAFVGYLNQPQATAEKL 376
Query: 418 SDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVAR 477
D GW+ T D+AV +G V I R D+IISGGENI +E+E VL + V E V+
Sbjct: 377 QD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 478 PDKFWGET 485
D+ WG++
Sbjct: 436 ADQRWGQS 443
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 120/488 (24%), Positives = 191/488 (39%), Gaps = 72/488 (14%)
Query: 19 FLERAATAYSD-CP-SIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 76
L RAAT D C ++ T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELQFGVPMSGAILNNINTRLDAHNLSVLLQHSE--SKLVFVDHLHSSLVLEALSLFPR 134
+ + GA+ +N RL + L+ L++ E + ++ V + + ++ S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS---- 122
Query: 135 DTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRP-----RSEWD 189
I V +G+P Y + P R
Sbjct: 123 ---------------------------GARIIFLGDLVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMVLNYTSGTTSSPKGVVHSHRGI--FILTANALIDWAVPKQPVYLWTLPMFHANGWGYT 247
P + YTSGTT PK + R +L + + + V L +P++H G+
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 248 WGMA-AVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMI-------SNSPDFEPL 299
A A+ T + + F L+Q+ VT + P L+ + +S + L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 300 KTPVQILTAGAPPPAPVLSRT-ESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLP-LEER 357
+ + AGA P VL + + + YG TE + K + P
Sbjct: 275 R---HVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 358 ARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCI 417
R+ V+ G + V N E GE + V VGY ++T +
Sbjct: 332 VRI-----VRIGGGVDEIVANGEEGELI----------VAASDSAFVGYLNQPQATAEKL 376
Query: 418 SDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVAR 477
D GW+ T D+AV +G V I R D+IISGGENI +E+E VL + V E V+
Sbjct: 377 QD-GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 478 PDKFWGET 485
D+ WG++
Sbjct: 436 ADQRWGQS 443
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 190/454 (41%), Gaps = 58/454 (12%)
Query: 51 QVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHNLSVLLQHS 110
++AS +S G+++G V V PN + + A IN + L +L S
Sbjct: 64 KLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDS 123
Query: 111 ESKLVFVDHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEG 170
E+ + V HS L + + V+ +++
Sbjct: 124 EATTLVV---HSXLYENFKPVLEKTGVERVFVVGGE------------------VNSLSE 162
Query: 171 FVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANAL---IDWAVP 227
+ G ++ V+ E D ++ YT GTT PKGV +H F L ANAL + +
Sbjct: 163 VXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTH---FNLAANALQLAVATGLS 219
Query: 228 KQPVYLWTLPMFHANGWGYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVL 287
+ P FH+ +G VG + F+ +++ I+K+ T P L
Sbjct: 220 HXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPAL 279
Query: 288 NMISNSPDFEPLK---TPVQILTAGAPPPAPVL-SRTESMGFVVCHG--------YGLTE 335
N++ N+ + + +++ GA P AP L + + C+ +G TE
Sbjct: 280 NVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTE 339
Query: 336 TAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGV-SLGE 394
V + PL R QGV + E+ V++ E G + GV GE
Sbjct: 340 ACPXVTTNP--------PL--RLDKSTTQGVPXSDI-ELKVISLEDGREL---GVGESGE 385
Query: 395 VVLRGGCVTVGYFKDKESTRRC--ISDNG--WFYTGDIAVMHVDGYVEIKDRSKDVIISG 450
+V+RG + GY+K ++ + C + G +F TGD+ + +G++ +DR K+VI
Sbjct: 386 IVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445
Query: 451 GENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
G I E+E++L + AV + AV+ +PD+ GE
Sbjct: 446 GYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE 479
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 120/488 (24%), Positives = 191/488 (39%), Gaps = 72/488 (14%)
Query: 19 FLERAATAYSD-CP-SIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPS 76
L RAAT D C ++ T +E R VA+ L + G++ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYELQFGVPMSGAILNNINTRLDAHNLSVLLQHSE--SKLVFVDHLHSSLVLEALSLFPR 134
+ + GA+ +N RL + L+ L++ E + ++ V + + ++ S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS---- 122
Query: 135 DTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRP-----RSEWD 189
I V +G+P Y + P R
Sbjct: 123 ---------------------------GARIIFLGDLVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMVLNYTSGTTSSPKGVVHSHRGI--FILTANALIDWAVPKQPVYLWTLPMFHANGWGYT 247
P + YTSGTT PK + R +L + + + V L +P++H G+
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 248 WGMA-AVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMI-------SNSPDFEPL 299
A A+ T + + F L+Q+ VT + P L+ + +S + L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 300 KTPVQILTAGAPPPAPVLSRT-ESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLP-LEER 357
+ + AGA P VL + + + YG TE + K + P
Sbjct: 275 R---HVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 358 ARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCI 417
R+ V+ G + V N E GE + V VGY ++T +
Sbjct: 332 VRI-----VRIGGGVDEIVANGEEGELI----------VAASDSAFVGYLNQPQATAEKL 376
Query: 418 SDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVAR 477
D GW+ T D+AV +G V I R D+IISGGENI +E+E VL + V E V+
Sbjct: 377 QD-GWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 478 PDKFWGET 485
D+ WG++
Sbjct: 436 ADQRWGQS 443
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 120/487 (24%), Positives = 189/487 (38%), Gaps = 72/487 (14%)
Query: 20 LERAATAYSD-CP-SIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSM 77
L RAAT D C ++ T +E R VA+ L + G++ V+VVAPN +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 78 YELQFGVPMSGAILNNINTRLDAHNLSVLLQHSE--SKLVFVDHLHSSLVLEALSLFPRD 135
+ GA+ +N RL + L+ L++ E + ++ V + + ++ S
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQSGS----- 122
Query: 136 TKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRP-----RSEWDP 190
I V +G+P Y + P R P
Sbjct: 123 --------------------------GARIIFLGDLVRDGEP-YSYGPPIEDPQREPAQP 155
Query: 191 MVLNYTSGTTSSPKGVVHSHRGI--FILTANALIDWAVPKQPVYLWTLPMFHANGWGYTW 248
+ YTSGTT PK + R +L + + + V L P++H G+
Sbjct: 156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVL 215
Query: 249 GMA-AVGATNICLRRFDASAISDLIQKHNVTHMCGAPVVLNMI-------SNSPDFEPLK 300
A A+ T + + F L+Q+ VT + P L+ + +S + L+
Sbjct: 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 301 TPVQILTAGAPPPAPVLSRT-ESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLP-LEERA 358
+ AGA P VL + + + YG TE + K + P
Sbjct: 276 ---HVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPKTGTEXAPGFFSEV 332
Query: 359 RLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCIS 418
R+ V+ G + V N E GE + V VGY ++T +
Sbjct: 333 RI-----VRIGGGVDEIVANGEEGELI----------VAASDSAFVGYLNQPQATAEKLQ 377
Query: 419 DNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARP 478
D GW+ T D+AV +G V I R D IISGGENI +E+E VL + V E V+
Sbjct: 378 D-GWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Query: 479 DKFWGET 485
D+ WG++
Sbjct: 437 DQRWGQS 443
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%)
Query: 393 GEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGE 452
G ++ RG GY+K +E +++G++ TGDI + DGY+ ++ R+KD I GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 453 NICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
+ + EVE+ L ++ AV++AA+V+ PD+F GE
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAMVSMPDQFLGE 470
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 16 TLGFLER-AATAYSDCPSIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 74
T G L R A Y D +I NT +++ E R ++A+ +GIQ+ V V PN+
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 75 PSMYELQFGVPMSGAI 90
+E+ F + GA+
Sbjct: 86 KEFFEVIFALFRLGAL 101
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%)
Query: 393 GEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGE 452
G ++ RG GY+K +E +++G++ TGDI + DGY+ ++ R+KD I GGE
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438
Query: 453 NICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
+ + EVE+ L ++ AV++AA V+ PD+F GE
Sbjct: 439 KVAAEEVENHLLAHPAVHDAAXVSXPDQFLGE 470
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 16 TLGFLER-AATAYSDCPSIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNV 74
T G L R A Y D +I NT +++ E R ++A+ +GIQ+ V V PN+
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 75 PSMYELQFGVPMSGAI 90
+E+ F + GA+
Sbjct: 86 KEFFEVIFALFRLGAL 101
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 185/474 (39%), Gaps = 55/474 (11%)
Query: 41 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 100
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 101 HNLSVLLQHSESKLVFV--DHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXX 158
++ + S S+LV + + + + K P++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT--------SVEHVIVL 220
Query: 159 XXXXXFIDTYEG-------FVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHR 211
ID EG +E+ P+++ +E DP+ + YTSG+T PKGV+H+
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHTTG 279
Query: 212 GIFILTANALIDWAVPKQP--VYLWTLPMFHANGWGYT-WGMAAVGATNICLRRF----D 264
G + A + P +Y T + G Y +G A GAT +
Sbjct: 280 GYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 265 ASAISDLIQKHNVTHMCGAPVVLNMISNSPDFE---PLKTPVQILTAGAPPPAP-----V 316
+ + ++ KH V + AP + + D ++ ++IL + P P
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWY 398
Query: 317 LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDV 376
+ V + TET G +++ PL LKA + + +
Sbjct: 399 WKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAIELKAGSATRPFFGVQPAL 448
Query: 377 VNPETGESVKRDGVSLGEVVLR----GGCVTVGYFKDKESTRRCI--SDNGWFYTGDIAV 430
V+ E ++G + G +V+ G T+ F D E + + +++GD A
Sbjct: 449 VD---NEGHPQEGATEGNLVITDSWPGQARTL--FGDHERFEQTYFSTFKNMYFSGDGAR 503
Query: 431 MHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
DGY I R DV+ G + +AE+ES L ++ + EAAVV P G+
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 177/462 (38%), Gaps = 56/462 (12%)
Query: 40 YTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 98
+ + E Q A+ LS + G+QRG V+VV P VP + + G +G I ++
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 99 DAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXX 158
+ ++ LQ S++K + V S P + R L++
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP--SLRIKLLVSEKSCDGWL------ 185
Query: 159 XXXXXFIDTYEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTA 218
++ + E + V S+ + + +TSGT+ PK HS+ + L A
Sbjct: 186 --------NFKKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLG-LKA 235
Query: 219 NALIDWAVPKQPVYLWTLPMFHANGWGYT--------WGMAAVGATNICLRRFDASAISD 270
W + +WT+ GW W + A ++ L +FD I
Sbjct: 236 KMDAGWTGLQASDIMWTI---SDTGWILNILCSLMEPWALGACTFVHL-LPKFDPLVILK 291
Query: 271 LIQKHNVTHMCGAPVVLNMISNSPDFEPLKTP--VQILTAGAP-PPAPVLSRTESMGFVV 327
+ + + M GAP+V M+ D K P +T G P + + G +
Sbjct: 292 TLSSYPIKSMMGAPIVYRMLLQQ-DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDI 350
Query: 328 CHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDVVNPETGESVKR 387
YG TET GL S +K + G + DV + +V
Sbjct: 351 RESYGQTET-GLTCMVS-------------KTMKIKPGYMGTAASCYDVQIIDDKGNVLP 396
Query: 388 DGVSLGEVVLRGG-----CVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDR 442
G G++ +R + GY + + T I + W GD + DGY + R
Sbjct: 397 PGTE-GDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGR 454
Query: 443 SKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
+ D+I S G I +EVE+ L + AV E AV++ PD GE
Sbjct: 455 ADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGE 496
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 177/462 (38%), Gaps = 56/462 (12%)
Query: 40 YTWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRL 98
+ + E Q A+ LS + G+QRG V+VV P VP + + G +G I ++
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 99 DAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXX 158
+ ++ LQ S++K + V S P + R L++
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP--SLRIKLLVSEKSCDGWL------ 185
Query: 159 XXXXXFIDTYEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTA 218
++ + E + V S+ + + +TSGT+ PK HS+ + L A
Sbjct: 186 --------NFKKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLG-LKA 235
Query: 219 NALIDWAVPKQPVYLWTLPMFHANGWGYT--------WGMAAVGATNICLRRFDASAISD 270
W + +WT+ GW W + A ++ L +FD I
Sbjct: 236 KMDAGWTGLQASDIMWTI---SDTGWILNILCSLMEPWALGACTFVHL-LPKFDPLVILK 291
Query: 271 LIQKHNVTHMCGAPVVLNMISNSPDFEPLKTP--VQILTAGAP-PPAPVLSRTESMGFVV 327
+ + + M GAP+V M+ D K P +T G P + + G +
Sbjct: 292 TLSSYPIKSMMGAPIVYRMLLQQ-DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDI 350
Query: 328 CHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDVVNPETGESVKR 387
YG TET GL S +K + G + DV + +V
Sbjct: 351 RESYGQTET-GLTCMVS-------------KTMKIKPGYMGTAASCYDVQIIDDKGNVLP 396
Query: 388 DGVSLGEVVLRGG-----CVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDR 442
G G++ +R + GY + + T I + W GD + DGY + R
Sbjct: 397 PGTE-GDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGR 454
Query: 443 SKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
+ D+I S G I +EVE+ L + AV E AV++ PD GE
Sbjct: 455 ADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGE 496
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 140/337 (41%), Gaps = 51/337 (15%)
Query: 172 VEEGDPKYKWVRPRSE-----WDPMVLNYTSGTTSSPKGVVHSHRGIF--ILTANALIDW 224
+EE P ++ RP E D ++ ++SGT PK V H + ILTA W
Sbjct: 206 LEESSPIFE--RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKY---W 260
Query: 225 AVPKQPVYLWTLPMFHANGWGY-TWG------MAAVGATNICLRRFDASAISDLIQKHNV 277
+ +T+ +GWG WG +A RF+A + + K+ V
Sbjct: 261 QNVEDDGLHYTVA---DSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGV 317
Query: 278 THMCGAPVVLNMISNSP----DFEPLKTPVQILTAGAPPPAPVLSR-TESMGFVVCHGYG 332
T C P + + +F LK V AG P V +R E G + G+G
Sbjct: 318 TTFCAPPTIYRFLIKEDLSHYNFSTLKYAV---VAGEPLNPEVFNRFLEFTGIKLMEGFG 374
Query: 333 LTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSL 392
TET + + W + + + K G K + L + D E GE
Sbjct: 375 QTETVVTIATFPW------MEPKPGSIGKPTPGYK-IELMDRDGRLCEVGEE-------- 419
Query: 393 GEVVL-----RGGCVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVI 447
GE+V+ + + V Y KD E T D G+++TGD+A M DGY+ R+ D+I
Sbjct: 420 GEIVINTMEGKPVGLFVHYGKDPERTEETWHD-GYYHTGDMAWMDEDGYLWFVGRADDII 478
Query: 448 ISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
+ G + EVES L + AV E A+ PD G+
Sbjct: 479 KTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQ 515
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 185/474 (39%), Gaps = 55/474 (11%)
Query: 41 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 100
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 101 HNLSVLLQHSESKLVFV--DHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXX 158
++ + S S+LV + + + + K P++
Sbjct: 169 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT--------SVEHVIVL 220
Query: 159 XXXXXFIDTYEG-------FVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHR 211
ID EG +E+ P+++ +E DP+ + YTSG+T PKGV+H+
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHTTG 279
Query: 212 GIFILTANALIDWAVPKQP--VYLWTLPMFHANGWGYT-WGMAAVGATNICLRRF----D 264
G + A + P +Y T + G Y +G A GAT +
Sbjct: 280 GYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 265 ASAISDLIQKHNVTHMCGAPVVLNMISNSPDFE---PLKTPVQILTAGAPPPAP-----V 316
+ + ++ KH V + AP + + D ++ ++IL + P P
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY 398
Query: 317 LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDV 376
+ V + TET G +++ PL LKA + + +
Sbjct: 399 WKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAIELKAGSATRPFFGVQPAL 448
Query: 377 VNPETGESVKRDGVSLGEVVLR----GGCVTVGYFKDKESTRRCI--SDNGWFYTGDIAV 430
V+ E ++G + G +V+ G T+ F D E + + +++GD A
Sbjct: 449 VD---NEGHPQEGATEGNLVITDSWPGQARTL--FGDHERFEQTYFSTFKNMYFSGDGAR 503
Query: 431 MHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
DGY I R DV+ G + +AE+ES L ++ + EAAVV P G+
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 111/481 (23%), Positives = 190/481 (39%), Gaps = 69/481 (14%)
Query: 41 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 100
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 101 HNLSVLLQHSESKLVFVD----HLHSSLVL-----EALSLFPRDTKRPHLVLXXXXXXXX 151
++ + S S+LV +S+ L +AL P T H+++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSD- 226
Query: 152 XXXXXXXXXXXXFIDTYEG-------FVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPK 204
ID EG +E+ P+++ +E DP+ + YTSG+T PK
Sbjct: 227 -------------IDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPK 272
Query: 205 GVVHSHRGIFILTANALIDWAVPKQP--VYLWTLPMFHANGWGYT-WGMAAVGATNICLR 261
GV+H+ G + A + P +Y T + G Y +G A GAT +
Sbjct: 273 GVLHTTGGYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331
Query: 262 RF----DASAISDLIQKHNVTHMCGAPVVLNMISNSPDFE---PLKTPVQILTAGAPPPA 314
+ + ++ KH V + AP + + D ++ ++IL + P
Sbjct: 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPIN 391
Query: 315 P-----VLSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTV 369
P + V + TET G +++ PL LKA +
Sbjct: 392 PEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAIELKAGSATRPF 441
Query: 370 GLTEVDVVNPETGESVKRDGVSLGEVVLR----GGCVTVGYFKDKESTRRCI--SDNGWF 423
+ +V+ E ++G + G +V+ G T+ F D E + + +
Sbjct: 442 FGVQPALVD---NEGHPQEGATEGNLVITDSWPGQARTL--FGDHERFEQTYFSTFKNMY 496
Query: 424 YTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWG 483
++GD A DGY I R DV+ G + +AE+ES L ++ + EAAVV P G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 484 E 484
+
Sbjct: 557 Q 557
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 185/474 (39%), Gaps = 55/474 (11%)
Query: 41 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 100
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 101 HNLSVLLQHSESKLVFV--DHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXX 158
++ + S S+LV + + + + K P++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT--------SVEHVIVL 220
Query: 159 XXXXXFIDTYEG-------FVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHR 211
ID EG +E+ P+++ +E DP+ + YTSG+T PKGV+H+
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHTTG 279
Query: 212 GIFILTANALIDWAVPKQP--VYLWTLPMFHANGWGYT-WGMAAVGATNICLRRF----D 264
G + A + P +Y T + G Y +G A GAT +
Sbjct: 280 GYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 265 ASAISDLIQKHNVTHMCGAPVVLNMISNSPDFE---PLKTPVQILTAGAPPPAP-----V 316
+ + ++ KH V + AP + + D ++ ++IL + P P
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY 398
Query: 317 LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDV 376
+ V + TET G +++ PL LKA + + +
Sbjct: 399 WKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAIELKAGSATRPFFGVQPAL 448
Query: 377 VNPETGESVKRDGVSLGEVVLR----GGCVTVGYFKDKESTRRCI--SDNGWFYTGDIAV 430
V+ E ++G + G +V+ G T+ F D E + + +++GD A
Sbjct: 449 VD---NEGHPQEGATEGNLVITDSWPGQARTL--FGDHERFEQTYFSTFKNMYFSGDGAR 503
Query: 431 MHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
DGY I R DV+ G + +AE+ES L ++ + EAAVV P G+
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 185/474 (39%), Gaps = 55/474 (11%)
Query: 41 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 100
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 101 HNLSVLLQHSESKLVFV--DHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXX 158
++ + S S+LV + + + + K P++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT--------SVEHVIVL 220
Query: 159 XXXXXFIDTYEG-------FVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHR 211
ID EG +E+ P+++ +E DP+ + YTSG+T PKGV+H+
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHTTG 279
Query: 212 GIFILTANALIDWAVPKQP--VYLWTLPMFHANGWGYT-WGMAAVGATNICLRRF----D 264
G + A + P +Y T + G Y +G A GAT +
Sbjct: 280 GYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 265 ASAISDLIQKHNVTHMCGAPVVLNMISNSPDFE---PLKTPVQILTAGAPPPAP-----V 316
+ + ++ KH V + AP + + D ++ ++IL + P P
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY 398
Query: 317 LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDV 376
+ V + TET G +++ PL LKA + + +
Sbjct: 399 WKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAIELKAGSATRPFFGVQPAL 448
Query: 377 VNPETGESVKRDGVSLGEVVLR----GGCVTVGYFKDKESTRRCI--SDNGWFYTGDIAV 430
V+ E ++G + G +V+ G T+ F D E + + +++GD A
Sbjct: 449 VD---NEGHPQEGATEGNLVITDSWPGQARTL--FGDHERFEQTYFSTFKNMYFSGDGAR 503
Query: 431 MHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
DGY I R DV+ G + +AE+ES L ++ + EAAVV P G+
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 185/474 (39%), Gaps = 55/474 (11%)
Query: 41 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 100
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 101 HNLSVLLQHSESKLVFV--DHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXX 158
++ + S S+LV + + + + K P++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT--------SVEHVIVL 220
Query: 159 XXXXXFIDTYEG-------FVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHR 211
ID EG +E+ P+++ +E DP+ + YTSG+T PKGV+H+
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHTTG 279
Query: 212 GIFILTANALIDWAVPKQP--VYLWTLPMFHANGWGYT-WGMAAVGATNICLRRF----D 264
G + A + P +Y T + G Y +G A GAT +
Sbjct: 280 GYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 265 ASAISDLIQKHNVTHMCGAPVVLNMISNSPDFE---PLKTPVQILTAGAPPPAP-----V 316
+ + ++ KH V + AP + + D ++ ++IL + P P
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY 398
Query: 317 LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDV 376
+ V + TET G +++ PL LKA + + +
Sbjct: 399 WKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAIELKAGSATRPFFGVQPAL 448
Query: 377 VNPETGESVKRDGVSLGEVVLR----GGCVTVGYFKDKESTRRCI--SDNGWFYTGDIAV 430
V+ E ++G + G +V+ G T+ F D E + + +++GD A
Sbjct: 449 VD---NEGHPQEGATEGNLVITDSWPGQARTL--FGDHERFEQTYFSTFKNMYFSGDGAR 503
Query: 431 MHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
DGY I R DV+ G + +AE+ES L ++ + EAAVV P G+
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 185/474 (39%), Gaps = 55/474 (11%)
Query: 41 TWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDA 100
++ E HR + A++L +GI++G VV++ P VP GA+ + I
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 101 HNLSVLLQHSESKLVFV--DHLHSSLVLEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXX 158
++ + S S+LV + + + + K P++
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT--------SVEHVIVL 220
Query: 159 XXXXXFIDTYEG-------FVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHR 211
ID EG +E+ P+++ +E DP+ + YTSG+T PKGV+H+
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHTTG 279
Query: 212 GIFILTANALIDWAVPKQP--VYLWTLPMFHANGWGYT-WGMAAVGATNICLRRF----D 264
G + A + P +Y T + G Y +G A GAT +
Sbjct: 280 GYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 265 ASAISDLIQKHNVTHMCGAPVVLNMISNSPDFE---PLKTPVQILTAGAPPPAP-----V 316
+ + ++ KH V + AP + + D ++ ++IL + P P
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY 398
Query: 317 LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDV 376
+ V + TET G +++ PL LKA + + +
Sbjct: 399 WKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAIELKAGSATRPFFGVQPAL 448
Query: 377 VNPETGESVKRDGVSLGEVVLR----GGCVTVGYFKDKESTRRCI--SDNGWFYTGDIAV 430
V+ E ++G + G +V+ G T+ F D E + + +++GD A
Sbjct: 449 VD---NEGHPQEGATEGNLVITDSWPGQARTL--FGDHERFEQTYFSTFKNMYFSGDGAR 503
Query: 431 MHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
DGY I R DV+ G + +AE+ES L ++ + EAAVV P G+
Sbjct: 504 RDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 108/474 (22%), Positives = 188/474 (39%), Gaps = 51/474 (10%)
Query: 26 AYSDCPSIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMY-----EL 80
A SD +++ ++ E ++ +A SL GI+ G V NV +Y L
Sbjct: 37 AASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALL 96
Query: 81 QFGVPMSGAILNNINTRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPH 140
+ GV A+ ++ + L+A+ + E L+ D H+ LF D
Sbjct: 97 KLGVAPVLALFSHQRSELNAYASQI-----EPALLIADRQHA--------LFSGDDFLNT 143
Query: 141 LVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEG--DPKYKWVRPRSEWDPMV-LNYTS 197
V D+ E +++ P + S D + +
Sbjct: 144 FV----------TEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSG 193
Query: 198 GTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVYLWTLPMFHANGWGY--TWGMAAVGA 255
GTT +PK + +H + ++ +Q YL +P H + G+ G
Sbjct: 194 GTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG 253
Query: 256 TNICLRRFDASAISDLIQKH--NVTHMCGAPVVL--NMISNSPDFEPLKTPVQILTAGAP 311
T + A+ LI+KH NVT + V L + L + + GA
Sbjct: 254 TVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313
Query: 312 PPAPVLSRTES-MGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVG 370
A + +R + +G + +G+ E GLV + +L + ++ QG
Sbjct: 314 LSATLAARIPAEIGCQLQQVFGMAE--GLV-------NYTRLD-DSAEKIIHTQGYPMCP 363
Query: 371 LTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAV 430
EV V + E G + + V G ++ RG GY+K + NG++ +GD+
Sbjct: 364 DDEVWVADAE-GNPLPQGEV--GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420
Query: 431 MHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
+ +GY+ ++ R KD I GGE I + E+E++L + AV AA+V+ D+ GE
Sbjct: 421 IDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGE 474
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 110/491 (22%), Positives = 192/491 (39%), Gaps = 74/491 (15%)
Query: 6 PNHANSTPLTTLGFLERAATAYSDCPSIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGH 65
P A+ T T F E A A D P++ Y+ T ++ E ++A L G +G
Sbjct: 457 PAQAHETKPLTYWFKE-AVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGS 515
Query: 66 VVSVVAPNVPSMYELQFGVPMSGAILNNINTRLDAHNLSVLLQHSESKLVFVDHLHSSLV 125
VV++ + GV +GA ++ +L +S +L S + + H +
Sbjct: 516 VVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLT---HQEMK 572
Query: 126 LEALSLFPRDTKRPHLVLXXXXXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRPR 185
+A L P+ FID F E+ + P
Sbjct: 573 EQAAEL-------PY------------------TGTTLFIDDQTRFEEQASDPATAIDPN 607
Query: 186 SEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANALIDW-AVPKQPVYLWTLPMFHANGW 244
DP + YTSGTT PKG + +H I L + +D+ A Q +L ++ + + +
Sbjct: 608 ---DPAYIMYTSGTTGKPKGNITTHANIQGLVKH--VDYMAFSDQDTFL-SVSNYAFDAF 661
Query: 245 GYTWGMAAVGATNICLRR----FDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLK 300
+ + + + A + + D ++DLI + NV M + N+++++ + + +K
Sbjct: 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE-DWMK 720
Query: 301 TPVQILTAGAPPPAP-VLSRTESMG---FVVCHGYGLTETAGLVVSCS-----WKPEWDK 351
IL G P V MG + C+G T G V + +
Sbjct: 721 GLRCILFGGERASVPHVRKALRIMGPGKLINCYG----PTEGTVFATAHVVHDLPDSISS 776
Query: 352 LPLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKE 411
LP+ K + V ++N ++ ++ G ++GE+ + G V+ GY +
Sbjct: 777 LPIG-----------KPISNASVYILNEQS--QLQPFG-AVGELCISGMGVSKGYVNRAD 822
Query: 412 STRRCISDNGW------FYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYS 465
T+ +N + + TGD+A DG +E R D + G I E+E L
Sbjct: 823 LTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882
Query: 466 NTAVNEAAVVA 476
V +A VVA
Sbjct: 883 YPGVKDAVVVA 893
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 113/475 (23%), Positives = 179/475 (37%), Gaps = 54/475 (11%)
Query: 41 TWSETHRRCLQVASSLS-SVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAILNNINTRLD 99
T+ E QVA L+ S+G+++G V+V P VP + GAI + +
Sbjct: 115 TYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174
Query: 100 AHNLSVLLQHSESKLVFV--DHLHSSLVLEALSLFP---RDTKRPHLVLXXXXXXXXXXX 154
+++L + +SK+V + V+E + R+T VL
Sbjct: 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234
Query: 155 XXXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIF 214
D ++ Y P DP+ L YTSG+T +PKGV HS G
Sbjct: 235 FHAPR------DLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYL 288
Query: 215 I---LTANALIDWAVPKQPVYLWTLPMFHANGWGYT-WGMAAVGATNICLRRFDA----S 266
+ LT D ++ V+ + G Y +G G + A S
Sbjct: 289 LGALLTMRYTFD--THQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYS 346
Query: 267 AISDLIQKHNVTHMCGAPVVLNMISNSPDF----EPLKTPVQILTAGAPPPAPVLS-RTE 321
D+I +H VT AP L ++ + D LK+ + + G P A V +E
Sbjct: 347 RYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSE 406
Query: 322 SMG---FVVCHGYGLTETAGLVVS------CSWKPEWDKLPLEERARLKARQGVKTVGLT 372
+G + Y TE+ +V+ KP P G+
Sbjct: 407 KIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPF--------------FGID 452
Query: 373 EVDVVNPETGESVKR---DGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIA 429
V V++P TGE + +GV + T+ D+ G+++TGD A
Sbjct: 453 AV-VLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGA 511
Query: 430 VMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
DGY+ I R DV+ G + +AE+E+ + + V E AVV D G+
Sbjct: 512 AKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQ 566
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 129/298 (43%), Gaps = 44/298 (14%)
Query: 195 YTSGTTSSPKGVVHSHRGIF---ILTANALIDWAVPKQPVYLWTLPMFHANGWG--YTWG 249
Y+SG+T PKG VH+H ++ L A ++ + + V +F A G G T+
Sbjct: 190 YSSGSTGKPKGTVHTHANLYWTAELYAKPIL--GIAENDVVFSAAKLFFAYGLGNGLTFP 247
Query: 250 MAAVGATNICL-RRFDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLKTPVQI--- 305
++ VGAT I + R A AI + +H T G P + + SP+ P + V I
Sbjct: 248 LS-VGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL-PARADVAIRIC 305
Query: 306 LTAGAPPPAPVLSR-TESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQ 364
+AG P + R T G + G G TE + +S R
Sbjct: 306 TSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSN-------------------RA 346
Query: 365 GVKTVGLT-------EVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCI 417
G G T E+++ + E G +V DG +G++ ++G V Y+ ++E +R
Sbjct: 347 GAVEYGTTGRPVPGYEIELRD-EAGHAVP-DG-EVGDLYIKGPSAAVMYWNNREKSRATF 403
Query: 418 SDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVV 475
W +GD +G RS D++ G+ + EVE VL + AV EAAVV
Sbjct: 404 LGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVV 460
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 96/468 (20%), Positives = 180/468 (38%), Gaps = 51/468 (10%)
Query: 32 SIVYNNTTYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPNVPSMYELQFGVPMSGAIL 91
+I+ ++ E R +A+ L+ G+ +G V PNV Y + F + +G ++
Sbjct: 48 AIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107
Query: 92 NNINTRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTK-RPHLVLXXXXXXX 150
N + L+ ++ + KL+ H D P ++L
Sbjct: 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT 167
Query: 151 XXXXXXXXXXXXXFIDT-YEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGVVHS 209
+I+T E FV+ V + G+T +PK + +
Sbjct: 168 DFGLLD-------WIETPAETFVDFSSTPADEV--------AFFQLSGGSTGTPKLIPRT 212
Query: 210 HRG----------IFILTANALIDWAVPKQPVYLWTLPMFHANGWGYTWGMAAVGATNIC 259
H I L +N + A+P ++ + P A G + G +
Sbjct: 213 HNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGCVVMAPNPEP 270
Query: 260 LRRFDASAISDLIQKHNVTHMCGAPVVLNM-ISNSPDFEPLKTPVQILTAGAPPPAPVLS 318
L F +IQ+H V P + M + + ++ +++L G L+
Sbjct: 271 LNCFS------IIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLA 324
Query: 319 RT--ESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGVKTVGLTEVDV 376
R E + + +G+ E GLV + +L + ++ QG E+ +
Sbjct: 325 RQVPEVLNCKLQQVFGMAE--GLV-------NYTRLD-DSDEQIFTTQGRPISSDDEIKI 374
Query: 377 VNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGY 436
V+ + E + + +G + RG GY++ E + ++ ++Y+GD+ DG
Sbjct: 375 VDEQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGN 431
Query: 437 VEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVARPDKFWGE 484
+ + R KD I GGE I S E+E ++ + V AA+VA D+ +GE
Sbjct: 432 LRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGE 479
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 130/338 (38%), Gaps = 71/338 (21%)
Query: 189 DPMVLNYTSGTTSSPKGVVHSHR------------GIFILTANALIDWAVPKQPVYLWTL 236
D L YTSG+T P+GV+ +HR GI + + + W L
Sbjct: 176 DIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSW-----------L 224
Query: 237 PMFHANGW-GYTWGMAAVGATNICLRRFDASAIS----DLIQKHNVTHMCGAPVVLNMIS 291
P +H G G+ A + LR D + LI K+ T P +
Sbjct: 225 PFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQ 284
Query: 292 ---NSPDFEPLKTPV-QILTAGAPPPAPVLSRTESMGFVVCHG------------YGLTE 335
N D L ++ GA P +S + F C YGL E
Sbjct: 285 RRVNEKDLAELDLSCWRVAGIGAEP----ISAEQLHQFAECFRQVNFDNKTFXPCYGLAE 340
Query: 336 TAGLVVSCSWKP------EWDKLPLEERARLKARQGVKTVGLTEVDVVN-----PETGES 384
A L VS S + E D+ LE + + A G +T ++ VN PE G
Sbjct: 341 NA-LAVSFSDEASGVVVNEVDRDILEYQGKAVA-PGAETRAVSTF--VNCGKALPEHGIE 396
Query: 385 VKRDGVS------LGEVVLRGGCVTVGYFKDKESTRRCISDNGWFYTGDIAVMHVDGYVE 438
++ + +G + + G + GYF D+ S I+ GW TGD+ + +DGY+
Sbjct: 397 IRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDE-IAATGWLDTGDLGYL-LDGYLY 454
Query: 439 IKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVA 476
+ R KD+II G NI ++E + ++ +A
Sbjct: 455 VTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIA 492
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 130/317 (41%), Gaps = 49/317 (15%)
Query: 189 DPMVLNYTSGTTSSPKGVVHSHRGIFILTANAL-IDWA-VPKQPVYLWTLPMFHANGWGY 246
D + +TSG+T PKGV+ HR LT L D+A V+L P+ W
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHR---ALTGTYLGQDYAGFGPDEVFLQCSPV----SWD- 266
Query: 247 TWGMAAVGATNICLR-------RFDASAISDLIQKHNVTHMCGAPVVLN-MISNSPD-FE 297
+G+ GA R D I +L+ +H VT + + + N ++ P+ FE
Sbjct: 267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFE 326
Query: 298 PLKTPVQILTAGAPPPAP--VLSRTESMGFVVCHGYGLTETAGLVVS---CSWKPEWDKL 352
++ +T G P P +R + + +GYG E+ G + L
Sbjct: 327 GVR---YAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTAL 383
Query: 353 PLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYF-KDKE 411
P+ GV G V++ + + +LGE+ + G + GY +
Sbjct: 384 PI----------GVPLAG-KRAYVLDDDLKPAANG---ALGELYVAGAGLAHGYVSRPAL 429
Query: 412 STRRCISD-------NGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLY 464
+ R ++D + TGD+A DG +E R+ D + G + EVE+ L
Sbjct: 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV 489
Query: 465 SNTAVNEAAVVARPDKF 481
+ AV +AAV+A+ +
Sbjct: 490 GHPAVRQAAVLAQDSRL 506
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 125/308 (40%), Gaps = 32/308 (10%)
Query: 184 PRSEWDPMVLNYTSGTTSSPKGVVHSHRGIF---ILTANALIDWAVPKQPVYLWTLPMFH 240
P D + YTSGTT +PKG + H+GI + N+L K + + F
Sbjct: 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL--NVTEKDRIGQFASISFD 235
Query: 241 ANGWGYTWGMAAVGATNICLRRF--DASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEP 298
A+ W + + I L+ D I + +T + P + + D E
Sbjct: 236 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL----DPER 291
Query: 299 LKTPVQILTAG-APPPAPVLSRTESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEER 357
+ + ++TAG A P+ V E + ++ + YG TET + + +W K +
Sbjct: 292 ILSIQTLITAGSATSPSLVNKWKEKVTYI--NAYGPTETT--ICATTWVA--TKETIGHS 345
Query: 358 ARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCI 417
+ A + + + ++ GE+ GE+ + G + GY+K E T +
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEA--------GELCIGGEGLARGYWKRPELTSQKF 397
Query: 418 SDNGW------FYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNE 471
DN + + TGD A DG +E R + + G + EVES+L + ++E
Sbjct: 398 VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 457
Query: 472 AAVVARPD 479
AV D
Sbjct: 458 TAVSVHKD 465
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 108/311 (34%), Gaps = 48/311 (15%)
Query: 195 YTSGTTSSPKGVVHSHRGIFILTANALIDWA--VPKQPVYLWTLPMFHANGWGYTWGMAA 252
+TSGTT PKGV SH + T + D A VPKQP L P Y A
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLA 211
Query: 253 VGATNICLRR---FDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEPLKTPV------ 303
+G T L + D + I + V P +M S DF K P
Sbjct: 212 LGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYF 271
Query: 304 --QILTAGAPPPAPVLSRTESMGFVVCHGYGLTET----AGLVVSCSWKPEWDKLPLEER 357
+ LT + R S + + YG TE + + ++ + +LP
Sbjct: 272 DGEELTVST--ARKLFERFPSAK--IINAYGPTEATVALSAIEITREMVDNYTRLP---- 323
Query: 358 ARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSL-----GEVVLRGGCVTVGYFKDKES 412
+G + D + DG L GE+++ G V+ GY + E
Sbjct: 324 -----------IGYPKPD----SPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEK 368
Query: 413 TRRC---ISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAV 469
T ++TGDI + D + R I G I +V L + V
Sbjct: 369 TAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV 428
Query: 470 NEAAVVARPDK 480
A V R +K
Sbjct: 429 ASAVAVPRYNK 439
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 371 LTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRC----ISDNG----W 422
+ EV +++P+T D V GE+ ++ V GY+ E TR I D+ +
Sbjct: 380 IQEVKIIDPDTLIPCDFDQV--GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437
Query: 423 FYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVL 463
TGD+ +H + + + R KD+II G+N ++E L
Sbjct: 438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSL 477
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 189 DPMVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVYLWTLPMFHANG 243
D L YTSG+T PKGV SH + + + + LP H G
Sbjct: 168 DIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXG 222
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 107/293 (36%), Gaps = 47/293 (16%)
Query: 189 DPMVLNYTSGTTSSPKGVVHSHRGI---FILTANALIDWAVPKQPVYLWTLPM-FHANGW 244
D + ++ +SGTT +P +VHS + L A L + K V+ + G
Sbjct: 87 DGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYXVGIRKTDVFQNSSGYGXFTGGL 146
Query: 245 GYTWGMAAVGATNICLRRFDASAISDLIQKHNVTHMCGAP---VVLNMISNSPDFEPLKT 301
G+ +G +G + ++ I T + P + L + +P +T
Sbjct: 147 GFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRET 206
Query: 302 PVQILTAGAPPPAPVLSRT--ESMGFVVCHGYGLTETAGLVVSCSWKPE-----WDKLPL 354
++ L GA P R + + +G TE G V+ + + W+ L
Sbjct: 207 TLKTLVIGAEPHTDEQRRKIERXLNVKAYNSFGXTEXNGPGVAFECQEQNGXHFWEDCYL 266
Query: 355 EERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKEST- 413
V++++PETGE V +GE+VL T+ D+E
Sbjct: 267 -------------------VEIIDPETGEPVPEG--EIGELVL----TTL----DREXXP 297
Query: 414 --RRCISDNGWFYTGDIAVMHVDGYVE-IKDRSKDVIISGGENICSAEVESVL 463
R D G ++ IK RS D I G NI +VE +L
Sbjct: 298 LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDXFIIKGVNIFPXQVEKIL 350
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 104/300 (34%), Gaps = 31/300 (10%)
Query: 193 LNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVYLWTLPMFHANGWGYTWGMAA 252
+N++SGTT PK + +H GI L A Q +L P+ WG
Sbjct: 169 INFSSGTTGRPKAIACTHAGITRLCLGQSF-LAFAPQMRFLVNSPLSFDAATLEIWGALL 227
Query: 253 VGATNIC--LRRFDASAISDLIQKHNVTHMCGAPVVLNMISNSPDFEP--LKTPVQILTA 308
G + L D + LI + A + ++ + D +P L Q+LT
Sbjct: 228 NGGCCVLNDLGPLDPGVLRQLIGERGAD---SAWLTASLFNTLVDLDPDCLGGLRQLLTG 284
Query: 309 GAPPPAPVLSRT--ESMGFVVCHGYGLTETAGLVVSCSWKPEWDKLPLEERARLKARQGV 366
G P + R + +GYG TE +C D L ++ KA G
Sbjct: 285 GDILSVPHVRRALLRHPRLHLVNGYGPTENT--TFTCCHVVTDDDLEEDDIPIGKAIAGT 342
Query: 367 KTVGLTE--VDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYFKDKESTRRCISDNGW-- 422
+ L E ++ P+ GE+V G + GY D TR + +
Sbjct: 343 AVLLLDEHGQEIAEPDRA----------GEIVAFGAGLAQGYRNDAARTRASFVELPYRG 392
Query: 423 -----FYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVLYSNTAVNEAAVVAR 477
+ TGD A G + R + G + +E + + A++ R
Sbjct: 393 RLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVR 452
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 118/297 (39%), Gaps = 49/297 (16%)
Query: 195 YTSGTTSSPKGVVHSHRGIFILTANA--LIDWAVPKQPVYLWTLPMFHANGWGYT----W 248
YTSGTT +PKGV H + L A A + D++ + W L FH+ + ++ W
Sbjct: 182 YTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDR----WLL--FHSLSFDFSVWEIW 235
Query: 249 GMAAVGATNICLRRFDASAISD---LIQKHNVTHMCGAPVVLNMISNSP-----DFEPLK 300
G + GA + L + A +I VT + P ++ + D L+
Sbjct: 236 GAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLR 295
Query: 301 TPVQILTAGAPPPAPVLSR-TESMGF---VVCHGYGLTETAGLVVSCSWKPEWDKLPLEE 356
++ G AP+L ++ G + +GYG+TET + L +
Sbjct: 296 ---YVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAY----LAQ 348
Query: 357 RARLKARQ----GVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYF----- 407
A + R G + VG DV ETGE + G L E LR +T F
Sbjct: 349 DASIIGRALPSFGTRVVGDDGRDVAPGETGE-LWLSGAQLAEGYLRRPELTAEKFPEVTD 407
Query: 408 -KDKESTRRCISDNGWFYTGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVL 463
K ES R ++ TGD+ DG + R+ I G I +++E+ +
Sbjct: 408 EKTGESVR-------YYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAV 457
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 110/279 (39%), Gaps = 49/279 (17%)
Query: 189 DPMVLNYTSGTTSSPKGVVHSHRGIFILTANAL-IDWA-VPKQPVYLWTLPMFHANGWGY 246
D + +TSG+T PKGV+ HR LT L D+A V+L P+ W
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHR---ALTGTYLGQDYAGFGPDEVFLQCSPV----SWD- 266
Query: 247 TWGMAAVGATNICLR-------RFDASAISDLIQKHNVTHMCGAPVVLN-MISNSPD-FE 297
+G+ GA R D I +L+ +H VT + + + N ++ P+ FE
Sbjct: 267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFE 326
Query: 298 PLKTPVQILTAGAPPPAP--VLSRTESMGFVVCHGYGLTETAGLVVS---CSWKPEWDKL 352
++ + T G P P +R + + +GYG E+ G + L
Sbjct: 327 GVRYAI---TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTAL 383
Query: 353 PLEERARLKARQGVKTVGLTEVDVVNPETGESVKRDGVSLGEVVLRGGCVTVGYF-KDKE 411
P+ GV G V++ + + +LGE+ + G + GY +
Sbjct: 384 PI----------GVPLAG-KRAYVLDDDLKPAANG---ALGELYVAGAGLAHGYVSRPAL 429
Query: 412 STRRCISD-------NGWFYTGDIAVMHVDGYVEIKDRS 443
+ R ++D + TGD+A DG +E R+
Sbjct: 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRA 468
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 54/223 (24%)
Query: 39 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN-----VPSMYELQFG-------VPM 86
T TWS+ +RR L VA LS G G V + AP V + LQ G VP
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 87 SGAILNNINTRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPHLVLXXX 146
G ++ L + +L S + V H+ R + P ++
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR-----------RPGESPPSIIEVD 165
Query: 147 XXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGV 206
+D G+ + D +Y P + + L YTSG+T +P GV
Sbjct: 166 LLD---------------LDAPNGYTFKED-EY----PSTAY----LQYTSGSTRTPAGV 201
Query: 207 VHSHRGIFILTAN------ALIDWAVPKQPVYLWTLPMFHANG 243
V SH+ + + A D P + LP +H G
Sbjct: 202 VXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXG 244
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 54/223 (24%)
Query: 39 TYTWSETHRRCLQVASSLSSVGIQRGHVVSVVAPN-----VPSMYELQFG-------VPM 86
T TWS+ +RR L VA LS G G V + AP V + LQ G VP
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 87 SGAILNNINTRLDAHNLSVLLQHSESKLVFVDHLHSSLVLEALSLFPRDTKRPHLVLXXX 146
G ++ L + +L S + V H+ R + P ++
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR-----------RPGESPPSIIEVD 165
Query: 147 XXXXXXXXXXXXXXXXXFIDTYEGFVEEGDPKYKWVRPRSEWDPMVLNYTSGTTSSPKGV 206
+D G+ + D +Y P + + L YTSG+T +P GV
Sbjct: 166 LLD---------------LDAPNGYTFKED-EY----PSTAY----LQYTSGSTRTPAGV 201
Query: 207 VHSHRGIFILTAN------ALIDWAVPKQPVYLWTLPMFHANG 243
V SH+ + + A D P + LP +H G
Sbjct: 202 VMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 116/312 (37%), Gaps = 36/312 (11%)
Query: 180 KWVRPRSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPKQPVYLWTLPMF 239
+WV+ E + + YTSG+T +PKGV S + T D+ V ++L P
Sbjct: 138 QWVK---EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFS 194
Query: 240 HANGWGYTWGMAAVGATNICLRRFDA----SAISDLIQKHNVTHMCGAPVVLNMISNSPD 295
+ G T C+ + DA + + ++K + P + M P
Sbjct: 195 FDLSVMDLYPCLQSGGTLHCVTK-DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG 253
Query: 296 F--EPLKTPVQILTAGAPPPAPV----LSRTESMGFVVCHGYGLTETAGLVVSCSWKPEW 349
F + L + G P V L R + + YG TE V S
Sbjct: 254 FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAK--IFNTYGPTEATVAVTS------- 304
Query: 350 DKLPLEERARLKARQGVKTVGLTEVDV---VNPETGESVKRDGVSLGEVVLRGGCVTVGY 406
+E + +R VG + D+ + E G+ + GE+V+ G V+ GY
Sbjct: 305 ----VEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEG--EKGEIVIAGPSVSRGY 358
Query: 407 FKDKESTRRCI--SDNGWFY-TGDIAVMHVDGYVEIKDRSKDVIISGGENICSAEVESVL 463
+ E T + + W Y TGD + DG + + R I G + E+E +
Sbjct: 359 LGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHV 417
Query: 464 YSNTAVNEAAVV 475
+ V A V+
Sbjct: 418 RQSQYVRSAVVI 429
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 272 IQKHNVTHMC-GAPVVLNMISNSPDFEPLKTPVQILTAGAPPPAPVLSRTESMGFVVC 328
+Q+ V MC GAP M ++SP T + +T+G P P+ L + +MG+V C
Sbjct: 288 VQRRRVGLMCEGAP----MRAHSPILNMEGTKIGTVTSGCPSPS--LKKNVAMGYVPC 339
>pdb|4INA|A Chain A, Crystal Structure Of The Q7mss8_wolsu Protein From
Wolinella Succinogenes. Northeast Structural Genomics
Consortium Target Wsr35
pdb|4INA|B Chain B, Crystal Structure Of The Q7mss8_wolsu Protein From
Wolinella Succinogenes. Northeast Structural Genomics
Consortium Target Wsr35
Length = 405
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 302 PVQILTAGAPPPAPVLSRTESMGFVVCHGYGLTE 335
P+Q+L A P PA + SRT+ + C+ G+ E
Sbjct: 284 PIQVLKALLPDPASLASRTKGKTNIGCYIKGIKE 317
>pdb|4AB6|A Chain A, Regulatory Domain Structure Of Nmb2055 (Metr), C103s C106s
Mutant, A Lysr Family Regulator From N. Meningitidis
pdb|4AB6|B Chain B, Regulatory Domain Structure Of Nmb2055 (Metr), C103s C106s
Mutant, A Lysr Family Regulator From N. Meningitidis
Length = 222
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 174 EGDPKYKWVRP-----RSEWDPMVLNYTSGTTSSPKGVVHSHRGIFILTANALIDWAVPK 228
E + W+ P R W + L+ SG + P G++ HR + + A +
Sbjct: 15 ESHTSFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQNGISF 74
Query: 229 QPVYLWTL 236
QP++ + +
Sbjct: 75 QPLFAYEM 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,415,906
Number of Sequences: 62578
Number of extensions: 589841
Number of successful extensions: 1574
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 101
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)