BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036363
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 21/187 (11%)
Query: 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVI 74
P N +VLVG TG GKSATGNSILGR+ F S ++ +T CE + K+ ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75 DTPGLFD--FSAGSEFDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGK 121
DTPG+FD EI HA L+V + R+++EE + FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 122 NCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDA---A 178
+ I++F+ +D+L D L DYL RE P+ ++++ +F +R +NK A A
Sbjct: 143 RARSFXILIFTRKDDL--GDTNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATGAEQEA 199
Query: 179 KRTEQIG 185
+R + +G
Sbjct: 200 QRAQLLG 206
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 26/226 (11%)
Query: 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79
R ++LVG TG GKSATGNSILG+R F SR ++ VT C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80 FDFSAGSEFDE---------------IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCF 124
F S S+ D HA L+V + RF+ +++ + ++ +FG++
Sbjct: 81 FS-SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVL 138
Query: 125 DYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT---KDAAKRT 181
+M++VF+ +++L +L DY+ + L+E++ R FDN+ + A+
Sbjct: 139 KWMVIVFTRKEDLAGG--SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVV 196
Query: 182 EQIGKLRSLQLAREH-AARLKVEVTAKSTQMKSDDKIHKLREDLER 226
+ +G + L L EH A EV + ++ +LR ER
Sbjct: 197 QLLGMVEGLVL--EHKGAHYSNEVYELAQVLRWAGPEERLRRVAER 240
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 97/179 (54%), Gaps = 18/179 (10%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
++LVG TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP +F
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 83
Query: 82 FSAGSE--FDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
+ E + E+ H L+V + R++ +++ ++ +FG++ + I
Sbjct: 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTI 142
Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
V+F+ +++L N +L DY+ K L +++ R F+N+ + + + +Q+ +L
Sbjct: 143 VLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVKEL 198
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 97/179 (54%), Gaps = 18/179 (10%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
++LVG TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP +F
Sbjct: 5 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 63
Query: 82 FSAGSE--FDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
+ E + E+ H L+V + R++ +++ ++ +FG++ + I
Sbjct: 64 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTI 122
Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
V+F+ +++L N +L DY+ K L +++ R F+N+ + + + +Q+ +L
Sbjct: 123 VLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVKEL 178
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 97/179 (54%), Gaps = 18/179 (10%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
++LVG TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP +F
Sbjct: 8 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 66
Query: 82 FSAGSE--FDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
+ E + E+ H L+V + R++ +++ ++ +FG++ + I
Sbjct: 67 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTI 125
Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
V+F+ +++L N +L DY+ K L +++ R F+N+ + + + +Q+ +L
Sbjct: 126 VLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVKEL 181
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 95/179 (53%), Gaps = 18/179 (10%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
++LVG TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP F
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDXFS 83
Query: 82 FSAGSE--FDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
+ E + E+ H L+V + R++ +++ ++ +FG++ + I
Sbjct: 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAXGHTI 142
Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
V+F+ +++L N +L DY K L +++ R F+N+ + + + +Q+ +L
Sbjct: 143 VLFTHKEDL--NGGSLXDYXHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVKEL 198
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSR-------ASSSGVTSTCEMHRTVLKDGQV- 70
+RTV LVGH G+GK+ ++L + K R +++ T ++HRT ++ G
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP 68
Query: 71 -------VNVIDTPGLFDFSAGSEFDEIHAAL 95
V ++D PG DF EI AL
Sbjct: 69 LLFRGHRVFLLDAPGYGDF-----VGEIRGAL 95
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
T++++G G GKS+T NSI+G R S + R+ + G +N+IDTPGL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
T+++ G G GKS+T NSI+G R S + R+ + G +N+IDTPGL
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
TV+++G G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 D 81
+
Sbjct: 96 E 96
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
TV+++G G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 D 81
+
Sbjct: 96 E 96
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
TV+++G G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 D 81
+
Sbjct: 96 E 96
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
TV+++G G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 37 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81 D 81
+
Sbjct: 95 E 95
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 29/161 (18%)
Query: 19 VRTVVLVGHTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMHR 62
+R +V+ H GK+ T IL GR F + G+T T +
Sbjct: 12 LRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 63 TVLKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL-- 118
KD ++ N+IDTPG DF+ E + A+VVF + E +
Sbjct: 72 CFWKDHRI-NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 119 --------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
K D +V+ + ++ L A ++ +GRE
Sbjct: 131 PRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVI 74
P G+ + L G + GKS+ NS++ R+ +S G T T + ++ D ++ +
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDE--LHFV 74
Query: 75 DTPG 78
D PG
Sbjct: 75 DVPG 78
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
V++VG GKS N + G+RA S + G+T + L++G V ++DTPG+
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFS--LENG--VKILDTPGIL 155
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 29/161 (18%)
Query: 19 VRTVVLVGHTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMHR 62
+R + + H GK+ T IL GR F + G+T T +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 63 TVLKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL-- 118
KD ++ N+IDTPG DF+ E + A+VVF + E +
Sbjct: 72 CFWKDHRI-NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 119 --------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
K D +V+ + ++ L A ++ +GRE
Sbjct: 131 PRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 29/161 (18%)
Query: 19 VRTVVLVGHTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMHR 62
+R + + H GK+ T IL GR F + G+T T +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 63 TVLKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL-- 118
KD ++ N+IDTPG DF+ E + A+VVF + E +
Sbjct: 72 CFWKDHRI-NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 119 --------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
K D +V+ + ++ L A ++ +GRE
Sbjct: 131 PRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 29/161 (18%)
Query: 19 VRTVVLVGHTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMHR 62
+R + + H GK+ T IL GR F + G+T T +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 63 TVLKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL-- 118
KD ++ N+IDTPG DF+ E + A+VVF + E +
Sbjct: 72 CFWKDHRI-NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 119 --------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
K D +V+ + ++ L A ++ +GRE
Sbjct: 131 PRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 29/161 (18%)
Query: 19 VRTVVLVGHTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMHR 62
+R + + H GK+ T IL GR F + G+T T +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 63 TVLKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL-- 118
KD ++ N+IDTPG DF+ E + A+VVF + E +
Sbjct: 72 CFWKDHRI-NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 119 --------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
K D +V+ + ++ L A ++ +GRE
Sbjct: 131 PRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 35/183 (19%)
Query: 20 RTVVLVGHTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMHR-------------TV 64
R + ++ H GK+ T IL R K + G + M + T
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 65 LKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL---- 118
+G VN+IDTPG DF+ E + A+ V +S + E T
Sbjct: 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 119 ---------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVL 169
G N F+Y + D L+AN ++ +G E + I+ L + +C
Sbjct: 131 IVFVNKMDKLGAN-FEYSVSTL--HDRLQANAAPIQLPIGAE--DEFEAIIDLVEMKCFK 185
Query: 170 FDN 172
+ N
Sbjct: 186 YTN 188
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
V ++GH +GK+ + + R+ + + G+T L G+ + +DTPG
Sbjct: 6 VVTIMGHVDHGKTTLLDKL--RKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63
Query: 81 DFSA----GSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE 136
FSA G++ +I LVV + Q E+ H+ K+ +++ + D+
Sbjct: 64 AFSAMRARGTQVTDI-VILVVAADDGVMKQTVESIQHA------KDAHVPIVLAINKCDK 116
Query: 137 LEANDETLEDYL 148
EA+ E ++ L
Sbjct: 117 AEADPEKVKKEL 128
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 67 DGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL------ 118
+G VN+IDTPG DF+ E + A+ V +S + E T
Sbjct: 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIV 132
Query: 119 -------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFD 171
G N F+Y + D L+AN ++ +G E + I+ L + +C +
Sbjct: 133 FVNKMDKLGAN-FEYSVSTL--HDRLQANAAPIQLPIGAE--DEFEAIIDLVEMKCFKYT 187
Query: 172 N 172
N
Sbjct: 188 N 188
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVI-- 74
+ V V + G TG+GKS+ N++ G + A+ +GV M R K + NV+
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFW 125
Query: 75 DTPGL 79
D PG+
Sbjct: 126 DLPGI 130
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
VVL+G G GKS N G S S V RT++ DG+ +I +++
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII-LLDMWE 65
Query: 82 FSAGSEFDEIH------AALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRD 135
+E+ H A L+V+S+ R S E+ + L +Q + D I++ +
Sbjct: 66 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELR-IQLRRARQTEDIPIILVGNKS 124
Query: 136 EL 137
+L
Sbjct: 125 DL 126
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
VVL+G G GKS N G S S V RT++ DG+ +I +++
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII-LLDMWE 65
Query: 82 FSAGSEFDEIH------AALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRD 135
+E+ H A L+V+S+ R S E+ + L +Q + D I++ +
Sbjct: 66 NKGENEWLHDHXMQVGDAYLIVYSITDRASFEKASELR-IQLRRARQTEDIPIILVGNKS 124
Query: 136 EL 137
+L
Sbjct: 125 DL 126
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVI-- 74
+ V V + G TG+GKS+ N++ G + A+ +GV M R K + NV+
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFW 125
Query: 75 DTPGL 79
D PG+
Sbjct: 126 DLPGI 130
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVI-- 74
+ V V + G TG+GKS+ N++ G + A+ +GV M R K + NV+
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFW 125
Query: 75 DTPGL 79
D PG+
Sbjct: 126 DLPGI 130
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVI-- 74
+ V V + G TG+GKS+ N++ G + A+ +GV M R K + NV+
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFW 125
Query: 75 DTPGL 79
D PG+
Sbjct: 126 DLPGI 130
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 24/110 (21%)
Query: 13 TSPSNGVRTVVLVGHTGNGKSATGNSIL----------------GRRAFKSRASSSGVTS 56
T+P N R + + H GK+ T +L + + G+T
Sbjct: 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITI 66
Query: 57 TCEMHRTVLK------DGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVF 98
T T K D VNVIDTPG DF+ E + A+VVF
Sbjct: 67 TSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVF 116
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPG 78
++TV LVG+ GK+ N++ G R + + GVT + ++ + + V+D PG
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGLR--QHVGNWPGVTVEKKEGIMEYREKEFL-VVDLPG 59
Query: 79 LFDFSAGSEFDEIHA 93
++ +A S DE+ A
Sbjct: 60 IYSLTAHS-IDELIA 73
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 21 TVVLVGHTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMHRTVLKDGQV---VNV 73
T+++VG +G GKS NS+ L + + T E + ++K+G V + +
Sbjct: 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 92
Query: 74 IDTPGLFD 81
+DTPG D
Sbjct: 93 VDTPGFGD 100
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 29/161 (18%)
Query: 19 VRTVVLVGHTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMHR 62
+R + + H GK+ T IL GR F + G+T T +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 63 TVLKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL-- 118
KD ++ N+ID PG DF+ E + A+VVF + E +
Sbjct: 72 CFWKDHRI-NIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 119 --------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
K D +V+ + ++ L A ++ +GRE
Sbjct: 131 PRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 29/161 (18%)
Query: 19 VRTVVLVGHTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMHR 62
+R + + H GK+ T IL GR F + G+T T +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 63 TVLKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL-- 118
KD ++ N+ID PG DF+ E + A+VVF + E +
Sbjct: 72 CFWKDHRI-NIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 119 --------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
K D +V+ + ++ L A ++ +GRE
Sbjct: 131 PRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 25/145 (17%)
Query: 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPG 78
+R + + H GK+ T IL + R + +TC KD ++ N+IDTPG
Sbjct: 7 LRNIGIAAHIDAGKTTTTERIL---YYTGRIA----VTTC-----FWKDHRI-NIIDTPG 53
Query: 79 LFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL----------FGKNCFDY 126
DF+ E + A+VVF + E + K D
Sbjct: 54 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADL 113
Query: 127 MIVVFSGRDELEANDETLEDYLGRE 151
+V+ + ++ L A ++ +GRE
Sbjct: 114 WLVIRTMQERLGARPVVMQLPIGRE 138
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSG-----VTSTCEMHRT--VLKDGQV---V 71
+++VG +G GKS N++ + SR +SS + T E+ V+++G V +
Sbjct: 5 IMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62
Query: 72 NVIDTPGLFD 81
VIDTPG D
Sbjct: 63 TVIDTPGFGD 72
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 21 TVVLVGHTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMHRTVLKDGQV---VNV 73
T+++VG +G GKS NS+ L + + T E + ++K+G V + +
Sbjct: 5 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 64
Query: 74 IDTPGLFD 81
+DTPG D
Sbjct: 65 VDTPGFGD 72
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 21 TVVLVGHTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMHRTVLKDGQV---VNV 73
T+++VG +G GKS NS+ L + + T E + ++K+G V + +
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 69
Query: 74 IDTPGLFD 81
+DTPG D
Sbjct: 70 VDTPGFGD 77
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 9 DCELTSPS-NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD 67
D ++S S N VVL+G G GKS N G S S V RT++ D
Sbjct: 26 DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG--VHDSMDSDCEVLGEDTYERTLMVD 83
Query: 68 GQVVNVIDTPGLFDFSAGSEFDEIH------AALVVFSVRSRFSQEEEATLHSLQTLFGK 121
G+ +I +++ +E+ H A L+V+S+ R S E+ + L +Q +
Sbjct: 84 GESATII-LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELR-IQLRRAR 141
Query: 122 NCFDYMIVVFSGRDEL 137
D I++ + +L
Sbjct: 142 QTEDIPIILVGNKSDL 157
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 29/161 (18%)
Query: 19 VRTVVLVGHTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMHR 62
+R + + H GK+ T IL GR F + G+T T +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 63 TVLKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL-- 118
KD ++ N+ID PG DF+ E + A+VVF + E +
Sbjct: 72 CFWKDHRI-NIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 130
Query: 119 --------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
K D +V+ + ++ L A ++ +GRE
Sbjct: 131 PRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDT 76
N VVL+G G GKS N G S S V RT++ DG+ +I
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAG--VHDSMDSDCEVLGEDTYERTLMVDGESATII-L 60
Query: 77 PGLFDFSAGSEFDEIH------AALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVV 130
+++ +E+ H A L+V+S+ R S E+ + L +Q + D I++
Sbjct: 61 LDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELR-IQLRRARQTEDIPIIL 119
Query: 131 FSGRDEL 137
+ +L
Sbjct: 120 VGNKSDL 126
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 25 VGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84
+G G + T N++L R+ + +G+TS + VN+IDTPG DF A
Sbjct: 32 LGSVDKGTTRTDNTLLERQ--RGITIQTGITS-------FQWENTKVNIIDTPGHMDFLA 82
Query: 85 --GSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDE 142
+ A+++ S + + H+L+ + F + +G D L +
Sbjct: 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID-LSTVYQ 141
Query: 143 TLEDYLGRECPKPLKEILHLFDNRCV 168
+++ L E +K+ + L+ N CV
Sbjct: 142 DIKEKLSAEI--VIKQKVELYPNVCV 165
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLF 80
+ L+G+ GKS N++ G + + GVT E + +G+ V+D PG++
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVY--IGNWPGVT--VEKKEGEFEYNGEKFKVVDLPGVY 65
Query: 81 DFSAGSEFDEIHA 93
+A S DEI A
Sbjct: 66 SLTANS-IDEIIA 77
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLF 80
+ L+G+ GKS N++ G + + GVT E + +G+ V+D PG++
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVY--IGNWPGVT--VEKKEGEFEYNGEKFKVVDLPGVY 62
Query: 81 DFSAGSEFDEIHA 93
+A S DEI A
Sbjct: 63 SLTANS-IDEIIA 74
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 35/183 (19%)
Query: 20 RTVVLVGHTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMHR-------------TV 64
R + ++ H GK+ T IL R K + G + M + T
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 65 LKDGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL---- 118
+G VN+IDTPG D + E + A+ V +S + E T
Sbjct: 71 AWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR 130
Query: 119 ---------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVL 169
G N F+Y + D L+AN ++ +G E + I+ L + +C
Sbjct: 131 IVFVNKMDKLGAN-FEYSVSTL--HDRLQANAAPIQLPIGAE--DEFEAIIDLVEMKCFK 185
Query: 170 FDN 172
+ N
Sbjct: 186 YTN 188
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 67 DGQVVNVIDTPGLFDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTL------ 118
+G VN+IDTPG D + E + A+ V +S + E T
Sbjct: 73 EGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIV 132
Query: 119 -------FGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFD 171
G N F+Y + D L+AN ++ +G E + I+ L + +C +
Sbjct: 133 FVNKMDKLGAN-FEYSVSTL--HDRLQANAAPIQLPIGAE--DEFEAIIDLVEMKCFKYT 187
Query: 172 N 172
N
Sbjct: 188 N 188
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLF 80
+ L+G+ GKS N++ G + + GVT E + +G+ V+D PG++
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY--IGNWPGVT--VEKKEGEFEYNGEKFKVVDLPGVY 61
Query: 81 DFSAGSEFDEIHA 93
+A S DEI A
Sbjct: 62 SLTANS-IDEIIA 73
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
+ L+G+ GKS N++ G + + GVT + +G+ V+D PG++
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY--IGNWPGVTVEKK-EGEFEYNGEKFKVVDLPGVYS 62
Query: 82 FSAGSEFDEIHA 93
+A S DEI A
Sbjct: 63 LTANS-IDEIIA 73
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGV 54
PSN + L G TG GK+A +L R ++RASS GV
Sbjct: 44 PSNAL----LYGLTGTGKTAVARLVL--RRLEARASSLGV 77
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----DGQV 70
S+G++ VV+ G GKS+ N++ GR A + VT R VL+ DG
Sbjct: 2 SHGMK-VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMP 53
Query: 71 VNVIDTPGLFDFS 83
+++IDT GL + S
Sbjct: 54 LHIIDTAGLREAS 66
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----DGQVVNVIDT 76
VV+ G GKS+ N++ GR A + VT R VL+ DG +++IDT
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 77 PGLFDFS 83
GL + S
Sbjct: 63 AGLREAS 69
>pdb|3CLW|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|C Chain C, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|D Chain D, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|E Chain E, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
pdb|3CLW|F Chain F, Crystal Structure Of Conserved Exported Protein From
Bacteroides Fragilis
Length = 507
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 60 MHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLF 119
+H KDGQ +V+ LF+ A ++ + A ++ +R+R +E A H+ +
Sbjct: 252 IHSMFYKDGQY-SVLKFKNLFNCVAAHDYWSAYPATLLVDIRNRIHKELSANGHNTKFWA 310
Query: 120 GKNC 123
+ C
Sbjct: 311 SEYC 314
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----DGQVVNVIDT 76
VV+ G GKS+ N++ GR A + VT R VL+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGXPLHIIDT 59
Query: 77 PGLFDFS 83
GL + S
Sbjct: 60 AGLREAS 66
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 34/108 (31%)
Query: 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRA---------------------SSSGVTST 57
VR + ++ H +GKS +S++ R S A S+ ++
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLY 78
Query: 58 CEMHRTVLK------DGQ--VVNVIDTPGLFDFSAGSEFDEIHAALVV 97
EM +K DG ++N+ID+PG DFS+ E+ AAL V
Sbjct: 79 SEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSS-----EVTAALRV 121
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 34/108 (31%)
Query: 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRA---------------------SSSGVTST 57
VR + ++ H +GKS +S++ R S A S+ ++
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLY 78
Query: 58 CEMHRTVLK------DGQ--VVNVIDTPGLFDFSAGSEFDEIHAALVV 97
EM +K DG ++N+ID+PG DFS+ E+ AAL V
Sbjct: 79 SEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSS-----EVTAALRV 121
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 26/129 (20%)
Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
TV++VG GKS N ++ ++ K+ + + TV G+ ++DT G+F
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF 60
Query: 81 DFSAGSEFDEIHAALVVFSVRSRFSQE-EEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139
D + + SQ+ +E TL+ ++ D ++ V G+ +
Sbjct: 61 D-----------------NPQDIISQKXKEVTLNXIREA------DLVLFVVDGKRGITK 97
Query: 140 NDETLEDYL 148
DE+L D+L
Sbjct: 98 EDESLADFL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,880,474
Number of Sequences: 62578
Number of extensions: 268576
Number of successful extensions: 858
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 72
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)