Query 036363
Match_columns 240
No_of_seqs 288 out of 2584
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 5E-30 1.1E-34 197.8 13.3 166 20-189 1-179 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 1.8E-28 3.8E-33 187.4 18.7 164 20-189 1-177 (196)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 9E-22 2E-26 156.4 15.2 144 18-164 37-192 (313)
4 TIGR00993 3a0901s04IAP86 chlor 99.9 1.5E-21 3.3E-26 166.8 17.0 149 20-171 119-287 (763)
5 cd01853 Toc34_like Toc34-like 99.8 3.6E-20 7.9E-25 145.4 13.8 123 18-142 30-167 (249)
6 COG5019 CDC3 Septin family pro 99.8 3.2E-17 6.9E-22 131.1 20.7 147 15-174 19-206 (373)
7 PF02421 FeoB_N: Ferrous iron 99.8 4.3E-18 9.3E-23 123.4 11.4 137 20-176 1-147 (156)
8 COG1159 Era GTPase [General fu 99.8 2.8E-17 6E-22 128.3 14.7 114 20-140 7-130 (298)
9 PRK15494 era GTPase Era; Provi 99.7 1.8E-16 3.8E-21 130.4 17.7 125 6-137 34-173 (339)
10 PF01926 MMR_HSR1: 50S ribosom 99.7 2.6E-17 5.7E-22 115.1 10.8 105 21-133 1-116 (116)
11 COG1160 Predicted GTPases [Gen 99.7 4E-17 8.6E-22 134.3 10.9 111 20-137 4-125 (444)
12 cd01850 CDC_Septin CDC/Septin. 99.7 5.5E-16 1.2E-20 123.9 16.3 144 17-173 2-185 (276)
13 TIGR03598 GTPase_YsxC ribosome 99.7 7.6E-16 1.7E-20 116.0 16.1 114 17-139 16-144 (179)
14 KOG2655 Septin family protein 99.7 4.2E-15 9.2E-20 119.9 19.1 149 12-173 14-200 (366)
15 cd04171 SelB SelB subfamily. 99.7 4.6E-16 1E-20 115.2 12.6 114 21-138 2-118 (164)
16 TIGR00436 era GTP-binding prot 99.7 7.6E-16 1.6E-20 123.3 14.3 110 21-138 2-121 (270)
17 cd04164 trmE TrmE (MnmE, ThdF, 99.7 7E-16 1.5E-20 113.2 12.8 111 20-139 2-122 (157)
18 cd01897 NOG NOG1 is a nucleola 99.7 1.3E-15 2.8E-20 113.4 13.6 114 20-139 1-128 (168)
19 COG1160 Predicted GTPases [Gen 99.7 1.3E-15 2.7E-20 125.5 14.5 144 18-173 177-334 (444)
20 cd01895 EngA2 EngA2 subfamily. 99.7 3.2E-15 6.9E-20 111.5 15.3 114 19-139 2-128 (174)
21 cd04119 RJL RJL (RabJ-Like) su 99.7 1.1E-15 2.5E-20 113.4 12.7 115 21-137 2-123 (168)
22 cd01898 Obg Obg subfamily. Th 99.7 1.5E-15 3.2E-20 113.3 13.1 116 21-139 2-129 (170)
23 PF00735 Septin: Septin; Inte 99.7 1.4E-15 3E-20 121.5 13.7 145 19-176 4-187 (281)
24 cd01863 Rab18 Rab18 subfamily. 99.7 2.8E-15 6.2E-20 110.7 14.3 115 20-137 1-119 (161)
25 cd01878 HflX HflX subfamily. 99.7 1.3E-15 2.8E-20 117.1 12.6 118 19-139 41-168 (204)
26 cd04124 RabL2 RabL2 subfamily. 99.7 7.2E-16 1.6E-20 114.1 10.4 112 20-136 1-116 (161)
27 COG1084 Predicted GTPase [Gene 99.7 2.2E-15 4.7E-20 119.0 13.4 113 19-138 168-294 (346)
28 KOG0084 GTPase Rab1/YPT1, smal 99.7 6E-15 1.3E-19 108.0 13.9 117 19-139 9-129 (205)
29 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.6E-15 3.4E-20 116.9 11.6 113 21-138 1-144 (208)
30 cd04140 ARHI_like ARHI subfami 99.7 1.5E-15 3.3E-20 112.7 11.2 117 20-138 2-122 (165)
31 PRK00089 era GTPase Era; Revie 99.7 1.7E-15 3.8E-20 122.7 12.3 112 20-138 6-127 (292)
32 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.5E-15 3.4E-20 113.3 10.8 116 19-138 2-123 (170)
33 cd01894 EngA1 EngA1 subfamily. 99.6 1E-15 2.2E-20 112.4 9.6 110 23-139 1-120 (157)
34 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.1E-15 2.3E-20 116.2 9.9 115 19-138 2-132 (195)
35 cd01864 Rab19 Rab19 subfamily. 99.6 1.5E-15 3.3E-20 112.7 10.3 115 20-139 4-123 (165)
36 cd01891 TypA_BipA TypA (tyrosi 99.6 3.9E-15 8.5E-20 113.5 12.7 114 19-138 2-131 (194)
37 TIGR03156 GTP_HflX GTP-binding 99.6 3.6E-15 7.8E-20 123.0 13.0 116 20-138 190-315 (351)
38 cd01861 Rab6 Rab6 subfamily. 99.6 5E-15 1.1E-19 109.4 12.6 113 21-138 2-119 (161)
39 cd00877 Ran Ran (Ras-related n 99.6 2.9E-15 6.2E-20 111.4 11.3 111 20-137 1-117 (166)
40 cd04122 Rab14 Rab14 subfamily. 99.6 6.7E-15 1.5E-19 109.4 13.2 114 20-138 3-121 (166)
41 cd04138 H_N_K_Ras_like H-Ras/N 99.6 6E-15 1.3E-19 108.9 12.7 114 20-138 2-120 (162)
42 cd01866 Rab2 Rab2 subfamily. 99.6 2.6E-15 5.6E-20 111.9 10.7 114 20-138 5-123 (168)
43 PRK00454 engB GTP-binding prot 99.6 4.4E-14 9.5E-19 107.8 17.8 113 18-139 23-150 (196)
44 cd04104 p47_IIGP_like p47 (47- 99.6 1.3E-14 2.7E-19 110.9 14.6 111 20-139 2-122 (197)
45 cd04163 Era Era subfamily. Er 99.6 5.3E-15 1.2E-19 109.4 12.2 111 20-137 4-124 (168)
46 cd04168 TetM_like Tet(M)-like 99.6 2.4E-15 5.2E-20 117.8 10.8 113 21-139 1-131 (237)
47 PTZ00369 Ras-like protein; Pro 99.6 3E-14 6.5E-19 108.2 16.5 113 20-137 6-123 (189)
48 TIGR00450 mnmE_trmE_thdF tRNA 99.6 4.9E-15 1.1E-19 125.6 13.3 110 20-137 204-323 (442)
49 COG0218 Predicted GTPase [Gene 99.6 6E-15 1.3E-19 109.4 12.1 115 17-140 22-151 (200)
50 cd01888 eIF2_gamma eIF2-gamma 99.6 3.8E-15 8.1E-20 114.4 11.4 114 21-138 2-151 (203)
51 TIGR03594 GTPase_EngA ribosome 99.6 2.8E-15 6.2E-20 127.8 11.8 112 21-139 1-122 (429)
52 cd04113 Rab4 Rab4 subfamily. 99.6 8.4E-15 1.8E-19 108.2 12.8 114 20-138 1-119 (161)
53 cd04136 Rap_like Rap-like subf 99.6 3.7E-15 8.1E-20 110.2 10.9 114 20-138 2-120 (163)
54 cd01865 Rab3 Rab3 subfamily. 99.6 3.9E-15 8.5E-20 110.5 11.1 114 20-138 2-120 (165)
55 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.9E-15 4.2E-20 112.3 9.2 111 21-138 2-116 (168)
56 cd04160 Arfrp1 Arfrp1 subfamil 99.6 2.4E-15 5.2E-20 111.8 9.7 116 21-138 1-121 (167)
57 PLN03071 GTP-binding nuclear p 99.6 6E-15 1.3E-19 114.5 12.2 116 17-137 11-130 (219)
58 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 4.3E-15 9.4E-20 113.9 11.2 116 20-137 1-123 (201)
59 PRK03003 GTP-binding protein D 99.6 5.3E-15 1.1E-19 127.1 12.9 113 18-137 37-159 (472)
60 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 2.1E-14 4.6E-19 106.6 14.5 109 22-138 2-113 (164)
61 cd00881 GTP_translation_factor 99.6 9.6E-15 2.1E-19 110.6 13.0 112 21-138 1-128 (189)
62 PRK00093 GTP-binding protein D 99.6 1.6E-14 3.5E-19 123.4 15.8 114 18-138 172-298 (435)
63 cd01886 EF-G Elongation factor 99.6 1.9E-15 4.1E-20 120.4 9.2 144 21-170 1-175 (270)
64 cd04169 RF3 RF3 subfamily. Pe 99.6 6E-15 1.3E-19 117.4 12.0 146 19-170 2-182 (267)
65 TIGR03594 GTPase_EngA ribosome 99.6 1.9E-14 4.1E-19 122.8 15.8 112 19-137 172-296 (429)
66 cd04106 Rab23_lke Rab23-like s 99.6 8.7E-15 1.9E-19 108.2 12.1 114 21-139 2-121 (162)
67 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.4E-14 3E-19 107.6 13.2 114 20-138 3-121 (166)
68 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.3E-14 2.8E-19 109.7 13.2 114 20-137 4-122 (183)
69 cd04109 Rab28 Rab28 subfamily. 99.6 1.1E-14 2.4E-19 112.9 13.0 117 20-138 1-123 (215)
70 cd04145 M_R_Ras_like M-Ras/R-R 99.6 5.2E-15 1.1E-19 109.6 10.7 115 19-138 2-121 (164)
71 cd04110 Rab35 Rab35 subfamily. 99.6 7.4E-15 1.6E-19 112.5 11.8 114 19-138 6-124 (199)
72 COG0486 ThdF Predicted GTPase 99.6 5.4E-15 1.2E-19 122.1 11.6 115 15-139 215-339 (454)
73 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 4.1E-15 8.8E-20 111.0 10.0 114 21-138 2-120 (170)
74 cd01860 Rab5_related Rab5-rela 99.6 1.7E-14 3.7E-19 106.7 13.3 114 20-137 2-119 (163)
75 smart00173 RAS Ras subfamily o 99.6 1.7E-14 3.7E-19 106.9 13.3 113 21-138 2-119 (164)
76 cd01867 Rab8_Rab10_Rab13_like 99.6 7E-15 1.5E-19 109.4 11.0 115 19-138 3-122 (167)
77 cd01879 FeoB Ferrous iron tran 99.6 2.3E-14 5.1E-19 105.3 13.6 106 24-139 1-116 (158)
78 PRK12299 obgE GTPase CgtA; Rev 99.6 1.5E-13 3.3E-18 112.5 19.5 118 20-139 159-286 (335)
79 cd01881 Obg_like The Obg-like 99.6 6.4E-15 1.4E-19 110.3 10.6 113 24-139 1-135 (176)
80 PLN03118 Rab family protein; P 99.6 1.4E-14 3.1E-19 111.9 12.8 115 20-138 15-134 (211)
81 PF00009 GTP_EFTU: Elongation 99.6 4.5E-16 9.7E-21 118.1 4.3 114 18-137 2-135 (188)
82 PRK11058 GTPase HflX; Provisio 99.6 1E-14 2.2E-19 123.0 12.8 116 20-138 198-323 (426)
83 cd01868 Rab11_like Rab11-like. 99.6 6.7E-15 1.4E-19 109.2 10.4 114 20-138 4-122 (165)
84 cd04131 Rnd Rnd subfamily. Th 99.6 1E-14 2.3E-19 109.5 11.3 110 20-136 2-117 (178)
85 cd04123 Rab21 Rab21 subfamily. 99.6 2.4E-14 5.3E-19 105.6 13.2 114 20-138 1-119 (162)
86 PRK00093 GTP-binding protein D 99.6 1.1E-14 2.4E-19 124.4 12.8 111 20-137 2-122 (435)
87 smart00175 RAB Rab subfamily o 99.6 1.8E-14 3.8E-19 106.7 12.4 114 20-138 1-119 (164)
88 cd04176 Rap2 Rap2 subgroup. T 99.6 1.2E-14 2.6E-19 107.6 11.4 114 20-138 2-120 (163)
89 cd04158 ARD1 ARD1 subfamily. 99.6 3.9E-14 8.4E-19 105.7 14.2 110 21-137 1-113 (169)
90 cd04157 Arl6 Arl6 subfamily. 99.6 5.6E-15 1.2E-19 109.2 9.5 113 21-138 1-118 (162)
91 cd04175 Rap1 Rap1 subgroup. T 99.6 8.6E-15 1.9E-19 108.5 10.5 114 20-138 2-120 (164)
92 cd01862 Rab7 Rab7 subfamily. 99.6 1.2E-14 2.5E-19 108.5 11.3 116 20-138 1-123 (172)
93 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 9.4E-15 2E-19 110.1 10.8 112 18-136 4-121 (182)
94 cd04127 Rab27A Rab27a subfamil 99.6 8.3E-15 1.8E-19 110.3 10.6 116 20-138 5-134 (180)
95 cd04154 Arl2 Arl2 subfamily. 99.6 7.9E-15 1.7E-19 109.8 10.3 113 19-138 14-129 (173)
96 cd00154 Rab Rab family. Rab G 99.6 1.1E-14 2.4E-19 106.7 10.9 114 20-137 1-118 (159)
97 PF08477 Miro: Miro-like prote 99.6 1.5E-15 3.2E-20 106.6 5.8 114 21-135 1-119 (119)
98 PRK05291 trmE tRNA modificatio 99.6 9.4E-15 2E-19 124.5 11.8 110 20-138 216-335 (449)
99 cd04120 Rab12 Rab12 subfamily. 99.6 8.5E-15 1.9E-19 112.0 10.4 112 21-137 2-118 (202)
100 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.2E-14 2.7E-19 108.6 11.1 113 20-137 3-120 (172)
101 cd04142 RRP22 RRP22 subfamily. 99.6 2E-14 4.2E-19 109.9 12.4 116 20-138 1-130 (198)
102 cd04112 Rab26 Rab26 subfamily. 99.6 2.6E-14 5.6E-19 108.8 13.0 115 20-138 1-120 (191)
103 cd04102 RabL3 RabL3 (Rab-like3 99.6 3.3E-14 7.2E-19 108.5 13.5 146 21-173 2-173 (202)
104 PRK03003 GTP-binding protein D 99.6 1.9E-14 4.1E-19 123.8 13.5 114 18-138 210-336 (472)
105 cd04134 Rho3 Rho3 subfamily. 99.6 1.5E-14 3.2E-19 109.9 11.4 112 20-138 1-118 (189)
106 cd04121 Rab40 Rab40 subfamily. 99.6 1E-14 2.2E-19 110.5 10.0 113 19-137 6-123 (189)
107 cd01893 Miro1 Miro1 subfamily. 99.6 1.7E-14 3.7E-19 107.2 10.8 113 21-139 2-118 (166)
108 TIGR00487 IF-2 translation ini 99.6 3.7E-14 8E-19 123.8 14.5 113 19-138 87-201 (587)
109 cd04116 Rab9 Rab9 subfamily. 99.6 4.8E-14 1E-18 105.2 13.2 116 19-137 5-127 (170)
110 cd04133 Rop_like Rop subfamily 99.6 3.4E-14 7.4E-19 106.5 12.3 111 20-137 2-118 (176)
111 cd04125 RabA_like RabA-like su 99.6 1.4E-14 2.9E-19 110.0 10.3 114 20-138 1-119 (188)
112 cd04132 Rho4_like Rho4-like su 99.6 1.1E-14 2.3E-19 110.4 9.7 112 20-138 1-119 (187)
113 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.2E-14 4.8E-19 107.6 11.2 111 20-138 2-119 (175)
114 cd04117 Rab15 Rab15 subfamily. 99.6 2E-14 4.4E-19 106.3 10.8 113 21-138 2-119 (161)
115 PRK05306 infB translation init 99.6 2.6E-14 5.6E-19 127.7 13.3 112 19-138 290-403 (787)
116 KOG0080 GTPase Rab18, small G 99.6 2.8E-14 6.1E-19 100.9 10.7 116 20-136 12-129 (209)
117 cd04128 Spg1 Spg1p. Spg1p (se 99.6 7.6E-14 1.7E-18 105.3 13.9 112 20-137 1-117 (182)
118 cd04149 Arf6 Arf6 subfamily. 99.6 4E-14 8.6E-19 105.5 12.2 110 20-137 10-123 (168)
119 cd00157 Rho Rho (Ras homology) 99.6 2.4E-14 5.1E-19 106.8 11.0 114 20-139 1-119 (171)
120 cd04148 RGK RGK subfamily. Th 99.6 2E-14 4.3E-19 111.8 10.9 116 21-139 2-121 (221)
121 cd04177 RSR1 RSR1 subgroup. R 99.6 4.4E-14 9.6E-19 105.2 12.3 114 20-138 2-120 (168)
122 cd01890 LepA LepA subfamily. 99.6 5.7E-15 1.2E-19 111.1 7.4 113 20-137 1-132 (179)
123 cd01892 Miro2 Miro2 subfamily. 99.6 9.1E-14 2E-18 103.7 13.8 113 19-137 4-121 (169)
124 cd01876 YihA_EngB The YihA (En 99.6 2.2E-13 4.8E-18 100.9 15.9 109 22-139 2-125 (170)
125 cd04118 Rab24 Rab24 subfamily. 99.6 3.4E-14 7.3E-19 108.2 11.6 113 20-138 1-119 (193)
126 PRK12317 elongation factor 1-a 99.6 5.6E-14 1.2E-18 119.5 14.1 116 18-138 5-153 (425)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.6 8.6E-14 1.9E-18 102.5 13.4 112 21-139 1-115 (158)
128 cd04111 Rab39 Rab39 subfamily. 99.6 2.6E-14 5.5E-19 110.4 11.0 116 20-138 3-123 (211)
129 COG3596 Predicted GTPase [Gene 99.6 6.1E-15 1.3E-19 113.8 7.3 118 17-139 37-163 (296)
130 smart00174 RHO Rho (Ras homolo 99.6 2.3E-14 5E-19 107.3 10.3 109 22-138 1-116 (174)
131 COG0488 Uup ATPase components 99.6 1.7E-13 3.8E-18 117.8 16.9 60 2-63 14-73 (530)
132 cd01889 SelB_euk SelB subfamil 99.6 1.2E-14 2.7E-19 110.6 8.8 114 21-139 2-135 (192)
133 PRK12298 obgE GTPase CgtA; Rev 99.6 4.8E-14 1E-18 117.6 13.0 116 21-138 161-289 (390)
134 cd04161 Arl2l1_Arl13_like Arl2 99.6 3.7E-14 7.9E-19 105.6 11.0 111 21-138 1-114 (167)
135 cd01875 RhoG RhoG subfamily. 99.6 2.5E-14 5.4E-19 108.8 10.2 110 20-136 4-119 (191)
136 cd04126 Rab20 Rab20 subfamily. 99.6 4.7E-14 1E-18 109.2 11.7 111 20-138 1-114 (220)
137 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 2.8E-14 6E-19 111.1 10.5 110 20-136 14-129 (232)
138 cd04146 RERG_RasL11_like RERG/ 99.6 2.7E-14 5.8E-19 106.0 10.1 113 21-137 1-119 (165)
139 cd01871 Rac1_like Rac1-like su 99.6 4.2E-14 9E-19 106.0 11.1 111 20-137 2-118 (174)
140 cd00879 Sar1 Sar1 subfamily. 99.6 1.6E-14 3.5E-19 109.7 8.8 122 7-138 10-134 (190)
141 PLN03110 Rab GTPase; Provision 99.6 2.4E-14 5.2E-19 110.9 9.8 114 19-137 12-130 (216)
142 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 3.8E-14 8.3E-19 103.6 10.1 119 20-140 23-144 (221)
143 cd04101 RabL4 RabL4 (Rab-like4 99.6 2E-14 4.2E-19 106.6 8.9 114 20-138 1-121 (164)
144 cd04144 Ras2 Ras2 subfamily. 99.6 2.1E-14 4.6E-19 109.1 9.2 114 21-138 1-120 (190)
145 PRK09518 bifunctional cytidyla 99.6 8.4E-14 1.8E-18 125.1 14.5 112 20-138 276-397 (712)
146 TIGR02729 Obg_CgtA Obg family 99.6 1.4E-13 3.1E-18 112.5 14.6 118 20-139 158-288 (329)
147 cd04159 Arl10_like Arl10-like 99.6 3.2E-14 6.9E-19 104.4 9.8 112 22-139 2-116 (159)
148 cd01885 EF2 EF2 (for archaea a 99.6 2.7E-14 5.8E-19 110.4 9.5 113 20-137 1-138 (222)
149 smart00177 ARF ARF-like small 99.6 1.4E-13 3.1E-18 103.2 13.2 111 20-137 14-127 (175)
150 PLN03108 Rab family protein; P 99.6 5.3E-14 1.1E-18 108.6 11.2 114 20-138 7-125 (210)
151 KOG0092 GTPase Rab5/YPT51 and 99.5 8.4E-14 1.8E-18 101.7 11.2 118 19-139 5-125 (200)
152 cd04170 EF-G_bact Elongation f 99.5 1.8E-14 3.9E-19 115.3 8.5 113 21-139 1-131 (268)
153 cd04130 Wrch_1 Wrch-1 subfamil 99.5 7.5E-14 1.6E-18 104.5 11.4 112 20-138 1-118 (173)
154 cd04135 Tc10 TC10 subfamily. 99.5 8E-14 1.7E-18 104.3 11.5 111 20-137 1-117 (174)
155 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 5.3E-14 1.2E-18 108.9 10.6 111 20-137 2-118 (222)
156 cd04150 Arf1_5_like Arf1-Arf5- 99.5 3.4E-14 7.4E-19 104.9 9.0 110 21-137 2-114 (159)
157 KOG1547 Septin CDC10 and relat 99.5 1.7E-13 3.6E-18 103.6 12.6 150 14-176 41-229 (336)
158 cd04147 Ras_dva Ras-dva subfam 99.5 4.4E-14 9.6E-19 108.1 9.9 113 21-138 1-118 (198)
159 cd04155 Arl3 Arl3 subfamily. 99.5 7.5E-14 1.6E-18 104.4 10.9 115 18-139 13-130 (173)
160 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 5.9E-14 1.3E-18 105.2 10.3 112 20-138 16-130 (174)
161 cd00880 Era_like Era (E. coli 99.5 3.4E-13 7.4E-18 98.7 14.3 110 24-139 1-119 (163)
162 cd04151 Arl1 Arl1 subfamily. 99.5 3.5E-14 7.5E-19 104.7 8.9 111 21-138 1-114 (158)
163 cd01870 RhoA_like RhoA-like su 99.5 1.1E-13 2.3E-18 103.7 11.7 112 20-138 2-119 (175)
164 cd00876 Ras Ras family. The R 99.5 4.3E-14 9.4E-19 104.0 9.3 113 21-138 1-118 (160)
165 PLN00223 ADP-ribosylation fact 99.5 2.2E-13 4.8E-18 102.7 13.3 111 19-137 17-131 (181)
166 CHL00071 tufA elongation facto 99.5 5E-14 1.1E-18 119.0 10.7 117 17-138 10-142 (409)
167 cd04114 Rab30 Rab30 subfamily. 99.5 5.6E-14 1.2E-18 104.6 9.8 115 19-138 7-126 (169)
168 cd04156 ARLTS1 ARLTS1 subfamil 99.5 5E-14 1.1E-18 103.9 9.3 111 21-137 1-114 (160)
169 PRK12296 obgE GTPase CgtA; Rev 99.5 5.1E-13 1.1E-17 113.7 16.3 115 20-137 160-297 (500)
170 PRK09518 bifunctional cytidyla 99.5 1.4E-13 3.1E-18 123.6 13.7 113 19-138 450-575 (712)
171 cd04139 RalA_RalB RalA/RalB su 99.5 8.3E-14 1.8E-18 103.0 10.1 114 20-138 1-119 (164)
172 PRK09554 feoB ferrous iron tra 99.5 4.5E-13 9.7E-18 120.4 16.4 110 20-139 4-127 (772)
173 TIGR00475 selB selenocysteine- 99.5 1.7E-13 3.6E-18 120.2 13.3 114 21-139 2-118 (581)
174 smart00178 SAR Sar1p-like memb 99.5 6.5E-14 1.4E-18 105.9 9.2 112 19-137 17-131 (184)
175 PTZ00133 ADP-ribosylation fact 99.5 8.5E-14 1.8E-18 105.0 9.7 110 20-137 18-131 (182)
176 KOG0394 Ras-related GTPase [Ge 99.5 4.9E-13 1.1E-17 96.9 12.9 116 18-136 8-130 (210)
177 cd04137 RheB Rheb (Ras Homolog 99.5 6.9E-14 1.5E-18 105.3 9.1 114 20-138 2-120 (180)
178 cd04143 Rhes_like Rhes_like su 99.5 1.6E-13 3.4E-18 108.2 11.4 114 21-138 2-127 (247)
179 PRK12735 elongation factor Tu; 99.5 1.2E-13 2.7E-18 116.1 11.2 116 18-138 11-142 (396)
180 TIGR00484 EF-G translation elo 99.5 1.5E-13 3.2E-18 123.2 12.1 118 16-139 7-142 (689)
181 TIGR01394 TypA_BipA GTP-bindin 99.5 8E-14 1.7E-18 122.0 10.1 113 20-138 2-130 (594)
182 COG2229 Predicted GTPase [Gene 99.5 4.7E-13 1E-17 97.3 12.3 116 20-139 11-136 (187)
183 PRK12297 obgE GTPase CgtA; Rev 99.5 3.6E-13 7.7E-18 113.1 13.5 114 21-136 160-286 (424)
184 PRK12736 elongation factor Tu; 99.5 2.1E-13 4.5E-18 114.7 12.1 116 18-138 11-142 (394)
185 cd04167 Snu114p Snu114p subfam 99.5 5.8E-14 1.2E-18 108.6 8.0 113 20-137 1-136 (213)
186 CHL00189 infB translation init 99.5 7.1E-14 1.5E-18 123.9 9.6 114 19-139 244-362 (742)
187 PRK10512 selenocysteinyl-tRNA- 99.5 2.9E-13 6.4E-18 119.0 13.2 144 21-175 2-151 (614)
188 KOG0087 GTPase Rab11/YPT3, sma 99.5 1.2E-13 2.7E-18 102.3 9.1 114 19-137 14-132 (222)
189 PLN00023 GTP-binding protein; 99.5 3.6E-13 7.7E-18 108.2 12.3 118 19-138 21-165 (334)
190 TIGR00485 EF-Tu translation el 99.5 2E-13 4.3E-18 114.9 11.2 117 17-138 10-142 (394)
191 smart00176 RAN Ran (Ras-relate 99.5 1.3E-13 2.7E-18 105.4 9.1 108 25-137 1-112 (200)
192 PF00350 Dynamin_N: Dynamin fa 99.5 2.3E-13 5E-18 101.3 10.2 109 22-134 1-168 (168)
193 TIGR00231 small_GTP small GTP- 99.5 6.2E-13 1.3E-17 97.2 12.2 115 20-139 2-123 (161)
194 PTZ00132 GTP-binding nuclear p 99.5 3.3E-13 7.2E-18 104.6 10.9 114 19-137 9-126 (215)
195 PRK10218 GTP-binding protein; 99.5 3.2E-13 6.9E-18 118.2 11.9 114 19-138 5-134 (607)
196 cd01883 EF1_alpha Eukaryotic e 99.5 1.8E-13 3.9E-18 106.3 9.3 113 21-138 1-151 (219)
197 PRK00007 elongation factor G; 99.5 1.4E-13 3.1E-18 123.3 9.9 118 16-139 7-142 (693)
198 PLN03127 Elongation factor Tu; 99.5 3.4E-13 7.3E-18 114.6 11.4 116 18-138 60-191 (447)
199 PRK04213 GTP-binding protein; 99.5 8.7E-13 1.9E-17 101.1 12.7 109 18-138 8-144 (201)
200 cd01896 DRG The developmentall 99.5 1.2E-12 2.6E-17 102.5 13.5 79 21-102 2-89 (233)
201 PRK00049 elongation factor Tu; 99.5 3.4E-13 7.4E-18 113.4 11.1 116 18-138 11-142 (396)
202 PRK12739 elongation factor G; 99.5 1.5E-13 3.3E-18 123.1 9.3 117 17-139 6-140 (691)
203 cd00882 Ras_like_GTPase Ras-li 99.5 6.3E-13 1.4E-17 96.3 11.0 112 24-139 1-117 (157)
204 TIGR00503 prfC peptide chain r 99.5 3.3E-13 7.3E-18 116.7 11.0 115 18-138 10-146 (527)
205 cd04129 Rho2 Rho2 subfamily. 99.5 7.3E-13 1.6E-17 100.4 11.6 110 20-137 2-118 (187)
206 KOG0078 GTP-binding protein SE 99.5 4.8E-13 1E-17 99.4 10.1 144 18-175 11-159 (207)
207 PLN03126 Elongation factor Tu; 99.5 2.8E-13 6E-18 115.8 10.0 117 17-138 79-211 (478)
208 PRK00741 prfC peptide chain re 99.5 4.6E-13 9.9E-18 115.8 11.4 148 18-171 9-191 (526)
209 PF00071 Ras: Ras family; Int 99.5 8.8E-14 1.9E-18 102.8 6.0 139 21-173 1-144 (162)
210 PRK05124 cysN sulfate adenylyl 99.5 4.7E-13 1E-17 114.7 11.0 118 17-139 25-175 (474)
211 PF00025 Arf: ADP-ribosylation 99.5 2.3E-12 5E-17 96.6 13.5 115 17-138 12-129 (175)
212 TIGR00483 EF-1_alpha translati 99.5 5.9E-13 1.3E-17 113.3 11.5 116 18-138 6-155 (426)
213 cd04105 SR_beta Signal recogni 99.5 2.8E-13 6.1E-18 103.9 8.3 114 21-139 2-124 (203)
214 TIGR02034 CysN sulfate adenyly 99.4 5.6E-13 1.2E-17 112.5 10.2 115 20-139 1-148 (406)
215 PRK15467 ethanolamine utilizat 99.4 4.5E-13 9.7E-18 98.7 8.5 97 20-137 2-104 (158)
216 PRK09866 hypothetical protein; 99.4 3.4E-11 7.3E-16 103.9 20.9 67 69-138 230-303 (741)
217 COG2262 HflX GTPases [General 99.4 1.2E-12 2.7E-17 106.5 11.6 121 17-140 190-320 (411)
218 TIGR00491 aIF-2 translation in 99.4 5E-13 1.1E-17 116.6 9.9 112 20-138 5-135 (590)
219 KOG0079 GTP-binding protein H- 99.4 1.4E-13 3.1E-18 96.1 5.2 114 20-139 9-127 (198)
220 TIGR02528 EutP ethanolamine ut 99.4 5.3E-13 1.1E-17 96.5 8.4 95 21-138 2-102 (142)
221 PRK13351 elongation factor G; 99.4 6.9E-13 1.5E-17 119.1 10.8 116 18-139 7-140 (687)
222 KOG1423 Ras-like GTPase ERA [C 99.4 1E-12 2.2E-17 102.8 10.0 117 17-139 70-200 (379)
223 KOG1145 Mitochondrial translat 99.4 1.7E-11 3.6E-16 102.9 17.7 115 19-140 153-269 (683)
224 KOG0098 GTPase Rab2, small G p 99.4 6.7E-13 1.5E-17 96.4 8.3 115 19-137 6-124 (216)
225 cd01873 RhoBTB RhoBTB subfamil 99.4 3.5E-12 7.7E-17 97.1 12.8 114 20-137 3-133 (195)
226 cd04103 Centaurin_gamma Centau 99.4 2.8E-12 6.1E-17 94.5 11.8 107 21-136 2-111 (158)
227 PRK05506 bifunctional sulfate 99.4 9.9E-13 2.1E-17 116.9 11.0 118 16-138 21-171 (632)
228 TIGR01393 lepA GTP-binding pro 99.4 5.5E-13 1.2E-17 117.0 9.3 114 19-137 3-135 (595)
229 PTZ00141 elongation factor 1- 99.4 8E-13 1.7E-17 112.5 9.4 114 18-136 6-157 (446)
230 cd04165 GTPBP1_like GTPBP1-lik 99.4 1.3E-12 2.9E-17 101.4 9.3 113 21-139 1-153 (224)
231 smart00053 DYNc Dynamin, GTPas 99.4 8.1E-12 1.7E-16 97.3 13.5 116 20-140 27-208 (240)
232 KOG0095 GTPase Rab30, small G 99.4 1.1E-12 2.3E-17 91.8 7.6 115 20-139 8-127 (213)
233 COG0370 FeoB Fe2+ transport sy 99.4 3E-12 6.5E-17 110.4 11.7 111 20-140 4-124 (653)
234 PRK04004 translation initiatio 99.4 1.4E-12 3E-17 114.3 9.6 111 20-137 7-136 (586)
235 KOG3859 Septins (P-loop GTPase 99.4 1.8E-11 4E-16 94.6 14.4 124 10-139 33-191 (406)
236 COG0480 FusA Translation elong 99.4 4.1E-12 9E-17 112.2 12.0 150 17-172 8-189 (697)
237 PRK05433 GTP-binding protein L 99.4 1.4E-12 2.9E-17 114.7 8.8 116 18-138 6-140 (600)
238 KOG0073 GTP-binding ADP-ribosy 99.4 5.6E-12 1.2E-16 89.7 9.9 144 19-174 16-162 (185)
239 PLN00116 translation elongatio 99.4 1.5E-12 3.2E-17 118.8 8.5 118 15-137 15-163 (843)
240 TIGR03680 eif2g_arch translati 99.4 5.2E-12 1.1E-16 106.7 11.1 118 18-139 3-149 (406)
241 PRK04000 translation initiatio 99.4 3.6E-12 7.9E-17 107.6 9.9 118 18-139 8-154 (411)
242 PF10662 PduV-EutP: Ethanolami 99.4 3.9E-12 8.4E-17 90.4 8.4 95 20-137 2-102 (143)
243 KOG0462 Elongation factor-type 99.4 1.5E-11 3.3E-16 103.1 12.7 146 15-174 56-219 (650)
244 COG1100 GTPase SAR1 and relate 99.4 5.8E-12 1.3E-16 97.8 9.7 115 20-139 6-126 (219)
245 PTZ00416 elongation factor 2; 99.4 2.2E-12 4.8E-17 117.5 8.4 117 16-137 16-157 (836)
246 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 2.8E-11 6.1E-16 93.7 13.0 153 21-177 1-162 (232)
247 KOG0093 GTPase Rab3, small G p 99.3 9E-12 2E-16 87.0 8.8 115 19-136 21-138 (193)
248 TIGR00437 feoB ferrous iron tr 99.3 2.4E-11 5.3E-16 106.8 13.8 103 26-138 1-113 (591)
249 PF05049 IIGP: Interferon-indu 99.3 1.8E-12 3.9E-17 106.3 6.1 109 19-136 35-153 (376)
250 COG0488 Uup ATPase components 99.3 4.2E-12 9E-17 109.4 8.6 60 4-65 335-394 (530)
251 TIGR00490 aEF-2 translation el 99.3 3.1E-12 6.8E-17 115.1 8.0 115 18-138 18-152 (720)
252 KOG1191 Mitochondrial GTPase [ 99.3 8.8E-12 1.9E-16 103.3 9.6 121 15-139 266-404 (531)
253 COG0532 InfB Translation initi 99.3 1.9E-11 4.2E-16 102.7 11.5 121 19-146 5-129 (509)
254 PF09439 SRPRB: Signal recogni 99.3 3E-12 6.6E-17 95.0 5.1 115 20-139 4-127 (181)
255 PRK10636 putative ABC transpor 99.3 5E-11 1.1E-15 106.2 13.7 48 2-51 323-370 (638)
256 KOG1489 Predicted GTP-binding 99.3 2.5E-11 5.4E-16 95.6 10.3 116 20-137 197-325 (366)
257 KOG0395 Ras-related GTPase [Ge 99.3 1.4E-11 3.1E-16 93.5 8.7 116 20-138 4-122 (196)
258 PLN00043 elongation factor 1-a 99.3 2.1E-11 4.5E-16 103.9 10.3 115 18-137 6-158 (447)
259 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.2E-11 4.8E-16 94.8 9.6 111 18-139 38-148 (225)
260 COG5256 TEF1 Translation elong 99.3 4.3E-11 9.4E-16 97.6 11.3 139 18-166 6-182 (428)
261 COG1217 TypA Predicted membran 99.2 7.5E-11 1.6E-15 97.3 10.9 116 19-140 5-136 (603)
262 KOG1490 GTP-binding protein CR 99.2 2.4E-11 5.1E-16 101.0 7.8 117 18-140 167-297 (620)
263 PRK11147 ABC transporter ATPas 99.2 1.7E-10 3.8E-15 102.9 13.8 48 2-51 330-377 (635)
264 KOG0086 GTPase Rab4, small G p 99.2 5E-11 1.1E-15 83.9 7.9 115 20-139 10-128 (214)
265 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 1.7E-11 3.6E-16 95.3 6.1 44 5-50 18-61 (254)
266 TIGR02836 spore_IV_A stage IV 99.2 4.2E-10 9E-15 92.6 14.4 116 17-137 15-193 (492)
267 KOG0088 GTPase Rab21, small G 99.2 7.4E-11 1.6E-15 83.5 8.3 110 20-135 14-129 (218)
268 COG1131 CcmA ABC-type multidru 99.2 2.7E-11 5.9E-16 97.8 6.1 45 3-49 17-61 (293)
269 PRK07560 elongation factor EF- 99.2 2.8E-11 6.2E-16 109.2 6.8 117 16-137 17-152 (731)
270 PTZ00327 eukaryotic translatio 99.2 1.5E-10 3.3E-15 98.4 9.7 120 15-138 30-185 (460)
271 COG3839 MalK ABC-type sugar tr 99.2 6.8E-11 1.5E-15 95.9 7.1 44 6-51 18-61 (338)
272 COG1126 GlnQ ABC-type polar am 99.2 3.8E-11 8.2E-16 90.0 4.8 47 2-50 13-59 (240)
273 PRK12740 elongation factor G; 99.2 1.1E-10 2.3E-15 104.9 8.6 109 25-139 1-127 (668)
274 COG1163 DRG Predicted GTPase [ 99.2 7.2E-10 1.6E-14 87.8 12.0 106 10-120 54-168 (365)
275 COG0536 Obg Predicted GTPase [ 99.2 6E-10 1.3E-14 88.9 11.5 117 21-139 161-290 (369)
276 COG1120 FepC ABC-type cobalami 99.2 3.6E-11 7.8E-16 93.8 4.6 46 2-49 13-58 (258)
277 cd03229 ABC_Class3 This class 99.2 1E-10 2.2E-15 87.9 6.9 44 3-48 12-55 (178)
278 cd03230 ABC_DR_subfamily_A Thi 99.2 1.3E-10 2.8E-15 86.9 7.4 43 4-48 13-55 (173)
279 COG1116 TauB ABC-type nitrate/ 99.1 8.7E-11 1.9E-15 90.3 6.1 46 2-49 14-59 (248)
280 PRK10636 putative ABC transpor 99.1 2.5E-09 5.5E-14 95.4 16.2 47 2-50 12-58 (638)
281 PRK11147 ABC transporter ATPas 99.1 3.1E-09 6.7E-14 95.0 16.5 46 2-49 14-59 (635)
282 KOG0091 GTPase Rab39, small G 99.1 1.2E-10 2.6E-15 82.9 5.5 144 20-174 9-157 (213)
283 cd01851 GBP Guanylate-binding 99.1 2.1E-09 4.7E-14 83.5 12.5 116 18-135 6-145 (224)
284 KOG0393 Ras-related small GTPa 99.1 1.9E-10 4.1E-15 85.9 6.2 112 20-137 5-122 (198)
285 COG1134 TagH ABC-type polysacc 99.1 1.2E-10 2.7E-15 89.0 5.2 44 4-49 40-83 (249)
286 KOG0070 GTP-binding ADP-ribosy 99.1 4.7E-10 1E-14 81.9 7.9 116 16-138 14-132 (181)
287 KOG0458 Elongation factor 1 al 99.1 1.8E-09 3.8E-14 91.5 12.2 145 11-164 169-351 (603)
288 COG5192 BMS1 GTP-binding prote 99.1 6.7E-10 1.5E-14 93.8 9.3 129 18-160 68-198 (1077)
289 TIGR01188 drrA daunorubicin re 99.1 1.5E-10 3.2E-15 94.3 5.1 46 2-49 4-49 (302)
290 PF03193 DUF258: Protein of un 99.1 8.4E-11 1.8E-15 85.6 3.1 61 20-84 36-102 (161)
291 PRK13537 nodulation ABC transp 99.1 3E-10 6.4E-15 92.6 6.6 46 2-49 18-63 (306)
292 cd01900 YchF YchF subfamily. 99.1 4.5E-10 9.7E-15 89.3 7.4 78 22-101 1-103 (274)
293 cd03228 ABCC_MRP_Like The MRP 99.1 3E-10 6.5E-15 84.8 6.1 42 5-48 16-57 (171)
294 cd03231 ABC_CcmA_heme_exporter 99.1 6.5E-10 1.4E-14 85.2 8.1 44 3-48 12-55 (201)
295 cd03246 ABCC_Protease_Secretio 99.1 3.1E-10 6.7E-15 84.9 6.1 44 4-49 15-58 (173)
296 PRK13536 nodulation factor exp 99.1 3.1E-10 6.7E-15 93.6 6.6 46 2-49 52-97 (340)
297 cd01858 NGP_1 NGP-1. Autoanti 99.1 4.8E-10 1E-14 82.5 7.0 56 19-79 102-157 (157)
298 cd03223 ABCD_peroxisomal_ALDP 99.1 7.4E-10 1.6E-14 82.2 7.7 44 4-49 14-57 (166)
299 PTZ00258 GTP-binding protein; 99.1 8.9E-10 1.9E-14 91.5 8.9 82 18-101 20-126 (390)
300 KOG0074 GTP-binding ADP-ribosy 99.1 1.6E-09 3.4E-14 75.5 8.6 122 12-139 10-134 (185)
301 COG1127 Ttg2A ABC-type transpo 99.0 5.5E-10 1.2E-14 85.2 6.6 47 2-50 19-65 (263)
302 cd03218 ABC_YhbG The ABC trans 99.0 4.4E-10 9.6E-15 88.1 6.4 45 3-49 12-56 (232)
303 cd03259 ABC_Carb_Solutes_like 99.0 6E-10 1.3E-14 86.2 7.1 45 3-49 12-56 (213)
304 COG1136 SalX ABC-type antimicr 99.0 3.6E-10 7.8E-15 86.6 5.5 43 5-49 19-61 (226)
305 COG4988 CydD ABC-type transpor 99.0 6.4E-10 1.4E-14 94.7 7.4 46 3-50 333-378 (559)
306 COG4619 ABC-type uncharacteriz 99.0 1.3E-10 2.7E-15 83.9 2.6 46 2-49 14-59 (223)
307 KOG0075 GTP-binding ADP-ribosy 99.0 2.3E-10 5E-15 80.1 3.8 114 20-139 21-137 (186)
308 cd03301 ABC_MalK_N The N-termi 99.0 9.2E-10 2E-14 85.1 7.5 44 3-48 12-55 (213)
309 cd03263 ABC_subfamily_A The AB 99.0 7.3E-10 1.6E-14 86.1 6.9 44 4-49 15-58 (220)
310 PRK09601 GTP-binding protein Y 99.0 1.6E-09 3.4E-14 89.1 8.9 80 20-101 3-107 (364)
311 PRK13543 cytochrome c biogenes 99.0 1.6E-09 3.4E-14 83.9 8.5 45 3-49 23-67 (214)
312 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.0 6.6E-10 1.4E-14 86.3 6.4 44 4-49 17-60 (218)
313 KOG0448 Mitofusin 1 GTPase, in 99.0 2E-09 4.3E-14 92.7 9.7 126 20-150 110-287 (749)
314 PRK11247 ssuB aliphatic sulfon 99.0 1E-09 2.2E-14 87.2 7.5 45 3-49 24-68 (257)
315 cd03261 ABC_Org_Solvent_Resist 99.0 4.8E-10 1E-14 88.0 5.6 45 3-49 12-56 (235)
316 TIGR01189 ccmA heme ABC export 99.0 1.2E-09 2.6E-14 83.6 7.6 44 3-48 12-55 (198)
317 cd03265 ABC_DrrA DrrA is the A 99.0 6.6E-10 1.4E-14 86.4 6.3 45 2-48 11-55 (220)
318 cd03233 ABC_PDR_domain1 The pl 99.0 1.4E-09 3E-14 83.4 8.0 40 3-44 19-58 (202)
319 cd03267 ABC_NatA_like Similar 99.0 1.4E-09 3.1E-14 85.4 8.2 45 3-49 33-77 (236)
320 TIGR01288 nodI ATP-binding ABC 99.0 8.8E-10 1.9E-14 89.8 7.2 46 2-49 15-60 (303)
321 cd03269 ABC_putative_ATPase Th 99.0 6.8E-10 1.5E-14 85.7 6.2 45 3-49 12-56 (210)
322 TIGR03522 GldA_ABC_ATP gliding 99.0 5.4E-10 1.2E-14 90.9 5.8 46 2-49 13-58 (301)
323 PRK13538 cytochrome c biogenes 99.0 1E-09 2.2E-14 84.4 7.0 45 3-49 13-57 (204)
324 cd03213 ABCG_EPDR ABCG transpo 99.0 1.4E-09 3E-14 82.9 7.6 43 4-48 22-66 (194)
325 PRK10908 cell division protein 99.0 8.2E-10 1.8E-14 86.0 6.5 45 3-49 14-58 (222)
326 KOG4252 GTP-binding protein [S 99.0 6E-11 1.3E-15 85.7 0.0 117 19-139 20-139 (246)
327 cd03216 ABC_Carb_Monos_I This 99.0 5.9E-10 1.3E-14 82.5 5.3 44 3-48 12-55 (163)
328 TIGR02673 FtsE cell division A 99.0 8.2E-10 1.8E-14 85.5 6.3 45 3-49 14-58 (214)
329 KOG0468 U5 snRNP-specific prot 99.0 2.8E-09 6E-14 91.5 9.9 117 16-137 125-262 (971)
330 COG1125 OpuBA ABC-type proline 99.0 3.2E-10 6.8E-15 87.2 3.8 47 2-50 12-58 (309)
331 cd03266 ABC_NatA_sodium_export 99.0 8.6E-10 1.9E-14 85.6 6.3 43 5-49 19-61 (218)
332 PRK11248 tauB taurine transpor 99.0 2.4E-09 5.1E-14 85.1 8.9 45 3-49 13-57 (255)
333 KOG1532 GTPase XAB1, interacts 99.0 2.8E-08 6.1E-13 77.2 14.3 70 69-139 116-196 (366)
334 COG4108 PrfC Peptide chain rel 99.0 3.4E-09 7.4E-14 87.1 9.7 148 20-173 13-195 (528)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.0 2E-09 4.2E-14 78.0 7.5 44 3-48 12-55 (144)
336 cd03268 ABC_BcrA_bacitracin_re 99.0 1E-09 2.2E-14 84.6 6.3 44 3-48 12-55 (208)
337 TIGR03410 urea_trans_UrtE urea 99.0 6.1E-10 1.3E-14 87.2 5.1 45 3-49 12-56 (230)
338 cd03293 ABC_NrtD_SsuB_transpor 99.0 1.5E-09 3.3E-14 84.3 7.3 43 4-48 17-59 (220)
339 TIGR00960 3a0501s02 Type II (G 99.0 7.9E-10 1.7E-14 85.7 5.6 43 4-48 16-58 (216)
340 cd03294 ABC_Pro_Gly_Bertaine T 99.0 1.6E-09 3.5E-14 86.8 7.5 45 3-49 36-80 (269)
341 cd03224 ABC_TM1139_LivF_branch 99.0 7.2E-10 1.6E-14 86.3 5.3 44 3-48 12-55 (222)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 2.2E-09 4.7E-14 77.5 7.4 57 20-81 84-140 (141)
343 cd03262 ABC_HisP_GlnQ_permease 99.0 1E-09 2.2E-14 84.9 6.0 45 3-49 12-56 (213)
344 cd04178 Nucleostemin_like Nucl 99.0 1.4E-09 3E-14 81.0 6.4 55 20-79 118-172 (172)
345 cd03217 ABC_FeS_Assembly ABC-t 99.0 1.1E-09 2.3E-14 83.9 5.9 39 3-43 12-50 (200)
346 COG4152 ABC-type uncharacteriz 99.0 6.4E-10 1.4E-14 85.0 4.5 77 2-85 13-89 (300)
347 COG1135 AbcC ABC-type metal io 99.0 6.5E-10 1.4E-14 87.7 4.7 45 4-50 19-63 (339)
348 cd03247 ABCC_cytochrome_bd The 98.9 7E-10 1.5E-14 83.4 4.1 42 5-48 16-57 (178)
349 KOG0465 Mitochondrial elongati 98.9 4.5E-09 9.9E-14 89.4 9.3 153 17-175 37-220 (721)
350 KOG0071 GTP-binding ADP-ribosy 98.9 4.8E-09 1E-13 73.0 7.6 123 18-149 16-144 (180)
351 cd03215 ABC_Carb_Monos_II This 98.9 1.4E-09 3E-14 82.1 5.3 41 6-48 15-55 (182)
352 KOG1954 Endocytosis/signaling 98.9 1.5E-07 3.3E-12 76.0 17.0 116 20-140 59-227 (532)
353 cd03264 ABC_drug_resistance_li 98.9 1.5E-09 3.3E-14 83.8 5.6 44 3-49 12-55 (211)
354 COG1118 CysA ABC-type sulfate/ 98.9 5.5E-09 1.2E-13 82.5 8.7 48 2-51 13-60 (345)
355 COG0411 LivG ABC-type branched 98.9 1.5E-10 3.2E-15 88.5 -0.1 46 2-49 15-60 (250)
356 COG1119 ModF ABC-type molybden 98.9 1E-08 2.2E-13 78.6 9.8 45 2-48 42-86 (257)
357 PRK09602 translation-associate 98.9 1E-08 2.3E-13 86.0 10.8 80 20-101 2-113 (396)
358 PRK11650 ugpC glycerol-3-phosp 98.9 2.1E-09 4.5E-14 89.2 6.6 45 3-49 16-60 (356)
359 KOG0081 GTPase Rab27, small G 98.9 1.2E-09 2.6E-14 77.5 4.4 157 21-189 11-178 (219)
360 COG4559 ABC-type hemin transpo 98.9 1.1E-09 2.3E-14 82.1 4.2 46 2-49 12-57 (259)
361 PRK13548 hmuV hemin importer A 98.9 2.5E-09 5.5E-14 85.1 6.4 46 2-49 13-58 (258)
362 KOG0097 GTPase Rab14, small G 98.9 3.7E-09 8E-14 73.5 6.2 115 18-136 10-128 (215)
363 TIGR02868 CydC thiol reductant 98.9 1.4E-09 3E-14 95.4 5.1 45 4-50 348-392 (529)
364 PRK11432 fbpC ferric transport 98.9 2.6E-09 5.6E-14 88.5 6.3 46 2-49 17-62 (351)
365 COG3842 PotA ABC-type spermidi 98.9 1.4E-09 2.9E-14 88.9 4.6 47 2-50 16-62 (352)
366 COG0410 LivF ABC-type branched 98.9 1.4E-09 3E-14 82.6 4.3 46 2-49 14-59 (237)
367 KOG1486 GTP-binding protein DR 98.9 4.2E-08 9E-13 75.3 12.2 106 10-120 53-167 (364)
368 TIGR01186 proV glycine betaine 98.9 4.4E-09 9.5E-14 87.3 7.6 46 2-49 4-49 (363)
369 TIGR03265 PhnT2 putative 2-ami 98.9 2.3E-09 4.9E-14 88.9 5.9 46 2-49 15-60 (353)
370 PRK11000 maltose/maltodextrin 98.9 2.8E-09 6.1E-14 89.0 6.4 45 3-49 15-59 (369)
371 TIGR03740 galliderm_ABC gallid 98.9 5.8E-09 1.3E-13 81.3 7.8 44 3-48 12-55 (223)
372 PRK10584 putative ABC transpor 98.9 3.1E-09 6.7E-14 83.1 6.3 43 5-49 24-66 (228)
373 cd01849 YlqF_related_GTPase Yl 98.9 4.4E-09 9.5E-14 77.2 6.7 56 19-79 100-155 (155)
374 cd01855 YqeH YqeH. YqeH is an 98.9 3.2E-09 6.9E-14 80.6 6.2 56 20-79 128-190 (190)
375 PRK09536 btuD corrinoid ABC tr 98.9 2E-09 4.2E-14 90.5 5.3 45 2-48 14-58 (402)
376 cd03222 ABC_RNaseL_inhibitor T 98.9 6.8E-09 1.5E-13 77.6 7.6 43 3-48 12-54 (177)
377 cd03232 ABC_PDR_domain2 The pl 98.9 4.1E-09 8.8E-14 80.2 6.6 38 4-43 20-57 (192)
378 PRK12288 GTPase RsgA; Reviewed 98.9 3.4E-09 7.3E-14 87.4 6.5 60 20-83 206-271 (347)
379 COG1122 CbiO ABC-type cobalt t 98.9 7.5E-09 1.6E-13 80.6 8.0 45 4-50 17-61 (235)
380 PRK11153 metN DL-methionine tr 98.9 2.6E-09 5.7E-14 88.4 5.6 44 4-49 18-61 (343)
381 COG4917 EutP Ethanolamine util 98.9 4.3E-09 9.3E-14 71.9 5.5 97 20-138 2-104 (148)
382 cd03300 ABC_PotA_N PotA is an 98.9 6.2E-09 1.3E-13 81.6 7.3 44 3-48 12-55 (232)
383 PRK13635 cbiO cobalt transport 98.9 2.7E-09 5.9E-14 85.9 5.3 44 4-49 20-63 (279)
384 TIGR02314 ABC_MetN D-methionin 98.9 3.4E-09 7.4E-14 87.4 6.0 44 4-49 18-61 (343)
385 COG2895 CysN GTPases - Sulfate 98.9 3.2E-08 7E-13 79.4 11.1 127 19-150 6-165 (431)
386 KOG0467 Translation elongation 98.9 7.5E-09 1.6E-13 90.1 8.0 117 15-137 5-137 (887)
387 PRK09452 potA putrescine/sperm 98.9 4.5E-09 9.8E-14 87.7 6.5 46 2-49 25-70 (375)
388 cd01899 Ygr210 Ygr210 subfamil 98.9 1E-08 2.2E-13 83.5 8.4 78 22-101 1-110 (318)
389 TIGR01166 cbiO cobalt transpor 98.9 2.3E-09 4.9E-14 81.5 4.2 45 2-48 3-47 (190)
390 PRK13546 teichoic acids export 98.9 1.9E-08 4.2E-13 80.2 9.7 44 4-49 37-80 (264)
391 TIGR03258 PhnT 2-aminoethylpho 98.9 4.5E-09 9.8E-14 87.3 6.2 43 3-47 17-59 (362)
392 cd03369 ABCC_NFT1 Domain 2 of 98.9 4.9E-09 1.1E-13 80.7 6.0 44 4-49 21-64 (207)
393 PRK12289 GTPase RsgA; Reviewed 98.9 5E-09 1.1E-13 86.4 6.2 60 20-83 173-238 (352)
394 COG4586 ABC-type uncharacteriz 98.9 1.6E-09 3.5E-14 84.1 3.0 43 6-50 39-81 (325)
395 TIGR00157 ribosome small subun 98.8 5.6E-09 1.2E-13 82.3 6.1 59 20-83 121-185 (245)
396 PRK15439 autoinducer 2 ABC tra 98.8 3.4E-09 7.3E-14 92.4 5.2 45 3-49 23-67 (510)
397 TIGR00968 3a0106s01 sulfate AB 98.8 8.3E-09 1.8E-13 81.2 6.9 44 3-48 12-55 (237)
398 PRK00098 GTPase RsgA; Reviewed 98.8 7.7E-09 1.7E-13 83.9 6.7 59 20-82 165-229 (298)
399 PRK10851 sulfate/thiosulfate t 98.8 7.5E-09 1.6E-13 85.8 6.7 46 2-49 13-58 (353)
400 COG2884 FtsE Predicted ATPase 98.8 2.8E-08 6.1E-13 73.3 8.8 47 2-50 13-59 (223)
401 COG4525 TauB ABC-type taurine 98.8 1.3E-08 2.7E-13 75.5 7.0 44 4-49 18-61 (259)
402 COG1162 Predicted GTPases [Gen 98.8 5.7E-09 1.2E-13 82.9 5.6 62 20-83 165-230 (301)
403 PRK09435 membrane ATPase/prote 98.8 4.7E-07 1E-11 74.0 16.9 61 68-139 148-209 (332)
404 cd01854 YjeQ_engC YjeQ/EngC. 98.8 9.6E-09 2.1E-13 82.9 6.9 60 20-83 162-227 (287)
405 cd03225 ABC_cobalt_CbiO_domain 98.8 3.3E-09 7E-14 82.0 4.0 44 4-49 14-57 (211)
406 PRK11174 cysteine/glutathione 98.8 4.8E-09 1E-13 93.1 5.5 44 3-49 362-405 (588)
407 COG4555 NatA ABC-type Na+ tran 98.8 4.8E-09 1E-13 78.0 4.5 79 6-88 17-95 (245)
408 COG1117 PstB ABC-type phosphat 98.8 1.9E-08 4.1E-13 75.6 7.6 39 2-42 18-56 (253)
409 KOG1707 Predicted Ras related/ 98.8 1.2E-08 2.5E-13 86.7 7.2 117 20-140 10-131 (625)
410 cd00267 ABC_ATPase ABC (ATP-bi 98.8 6.8E-09 1.5E-13 76.3 5.2 42 4-47 12-53 (157)
411 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.6E-08 3.4E-13 81.7 7.7 60 19-83 121-180 (287)
412 PRK15177 Vi polysaccharide exp 98.8 3.8E-09 8.1E-14 81.7 3.9 43 5-49 1-43 (213)
413 KOG3883 Ras family small GTPas 98.8 1.3E-07 2.8E-12 67.0 11.1 120 19-140 9-134 (198)
414 COG3638 ABC-type phosphate/pho 98.8 3.9E-09 8.4E-14 80.4 3.8 45 2-48 15-59 (258)
415 PRK10070 glycine betaine trans 98.8 7.8E-09 1.7E-13 86.8 6.0 44 4-49 41-84 (400)
416 cd01856 YlqF YlqF. Proteins o 98.8 1.9E-08 4.1E-13 75.1 7.5 56 20-80 116-171 (171)
417 TIGR03608 L_ocin_972_ABC putat 98.8 3.5E-09 7.6E-14 81.5 3.5 44 3-48 10-53 (206)
418 cd03226 ABC_cobalt_CbiO_domain 98.8 4.1E-09 8.9E-14 81.0 3.9 44 4-49 13-56 (205)
419 PRK11607 potG putrescine trans 98.8 9.7E-09 2.1E-13 85.8 6.3 45 3-49 31-75 (377)
420 cd03295 ABC_OpuCA_Osmoprotecti 98.8 3E-09 6.5E-14 83.9 3.1 44 4-49 14-57 (242)
421 PRK13657 cyclic beta-1,2-gluca 98.8 5.8E-09 1.3E-13 92.6 5.3 44 4-49 348-391 (588)
422 cd03298 ABC_ThiQ_thiamine_tran 98.8 1.5E-08 3.3E-13 78.2 6.9 38 9-48 16-53 (211)
423 PRK10247 putative ABC transpor 98.8 4.5E-09 9.8E-14 82.0 4.0 44 3-48 19-62 (225)
424 COG0481 LepA Membrane GTPase L 98.8 3.1E-08 6.8E-13 82.4 8.9 118 17-139 7-143 (603)
425 cd03235 ABC_Metallic_Cations A 98.8 4.2E-09 9.1E-14 81.5 3.8 45 3-49 11-55 (213)
426 COG0050 TufB GTPases - transla 98.8 1.6E-08 3.4E-13 79.3 6.8 136 18-164 11-162 (394)
427 TIGR01277 thiQ thiamine ABC tr 98.8 2.1E-08 4.6E-13 77.5 7.6 41 6-48 13-53 (213)
428 KOG0410 Predicted GTP binding 98.8 6.8E-09 1.5E-13 82.3 4.8 117 19-137 178-307 (410)
429 KOG0096 GTPase Ran/TC4/GSP1 (n 98.8 6E-08 1.3E-12 71.1 9.3 115 18-136 9-126 (216)
430 PRK14250 phosphate ABC transpo 98.8 3.3E-09 7.1E-14 83.7 2.9 45 3-49 15-59 (241)
431 PRK11176 lipid transporter ATP 98.8 5.5E-09 1.2E-13 92.7 4.5 45 4-50 356-400 (582)
432 TIGR02315 ABC_phnC phosphonate 98.8 6.1E-09 1.3E-13 82.2 4.3 44 3-48 14-57 (243)
433 cd03289 ABCC_CFTR2 The CFTR su 98.8 7.4E-09 1.6E-13 83.0 4.8 40 3-44 16-55 (275)
434 COG3840 ThiQ ABC-type thiamine 98.8 6.9E-09 1.5E-13 76.0 4.1 39 10-50 18-56 (231)
435 cd03296 ABC_CysA_sulfate_impor 98.8 4.9E-09 1.1E-13 82.5 3.6 44 3-48 14-57 (239)
436 PRK15064 ABC transporter ATP-b 98.8 1.2E-08 2.7E-13 89.4 6.3 45 3-49 331-375 (530)
437 KOG0090 Signal recognition par 98.8 1.5E-08 3.3E-13 75.7 5.7 113 20-139 39-160 (238)
438 cd03219 ABC_Mj1267_LivG_branch 98.8 6.1E-09 1.3E-13 81.9 3.9 44 3-48 12-55 (236)
439 PRK13540 cytochrome c biogenes 98.8 5.9E-09 1.3E-13 79.8 3.6 45 2-48 12-56 (200)
440 PRK10790 putative multidrug tr 98.8 8.2E-09 1.8E-13 91.8 5.1 44 4-49 354-397 (592)
441 TIGR03596 GTPase_YlqF ribosome 98.8 1.9E-08 4.2E-13 80.8 6.7 59 19-82 118-176 (276)
442 TIGR03415 ABC_choXWV_ATP choli 98.8 1.3E-08 2.8E-13 85.0 5.8 46 2-49 35-80 (382)
443 cd03258 ABC_MetN_methionine_tr 98.8 7.4E-09 1.6E-13 81.2 4.2 43 5-49 19-61 (233)
444 TIGR03597 GTPase_YqeH ribosome 98.8 4.8E-09 1E-13 87.3 3.2 109 20-137 155-279 (360)
445 KOG0083 GTPase Rab26/Rab37, sm 98.8 8.1E-10 1.8E-14 76.1 -1.1 113 23-138 1-117 (192)
446 TIGR02857 CydD thiol reductant 98.8 1.1E-08 2.4E-13 89.8 5.6 43 5-49 336-378 (529)
447 cd03292 ABC_FtsE_transporter F 98.8 6.7E-09 1.4E-13 80.4 3.8 43 4-48 14-56 (214)
448 PRK13539 cytochrome c biogenes 98.8 6.6E-09 1.4E-13 80.0 3.7 44 3-48 14-57 (207)
449 cd03260 ABC_PstB_phosphate_tra 98.8 5.8E-09 1.3E-13 81.5 3.5 39 3-43 12-50 (227)
450 cd03257 ABC_NikE_OppD_transpor 98.8 8.4E-09 1.8E-13 80.6 4.3 43 5-49 19-61 (228)
451 KOG2486 Predicted GTPase [Gene 98.8 6.9E-08 1.5E-12 75.2 9.2 115 16-139 133-263 (320)
452 PRK10895 lipopolysaccharide AB 98.8 6.1E-09 1.3E-13 82.1 3.5 44 3-48 15-58 (241)
453 PRK13638 cbiO cobalt transport 98.8 8.1E-09 1.8E-13 82.9 4.3 46 2-49 12-57 (271)
454 TIGR03348 VI_IcmF type VI secr 98.8 3E-07 6.5E-12 87.3 15.3 119 20-150 112-265 (1169)
455 KOG0464 Elongation factor G [T 98.7 2.8E-09 6.1E-14 87.1 1.5 116 18-139 36-169 (753)
456 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.7 6.5E-09 1.4E-13 81.0 3.4 45 2-48 33-77 (224)
457 KOG0066 eIF2-interacting prote 98.7 3.6E-08 7.8E-13 81.6 7.8 55 2-58 598-652 (807)
458 cd03256 ABC_PhnC_transporter A 98.7 7.9E-09 1.7E-13 81.5 3.9 43 4-48 14-56 (241)
459 COG2274 SunT ABC-type bacterio 98.7 1E-08 2.2E-13 91.6 4.9 44 4-49 486-529 (709)
460 PRK15056 manganese/iron transp 98.7 6.8E-09 1.5E-13 83.3 3.5 45 3-49 19-63 (272)
461 PRK15112 antimicrobial peptide 98.7 9.1E-09 2E-13 82.4 4.2 44 4-49 26-69 (267)
462 COG4604 CeuD ABC-type enteroch 98.7 2.6E-08 5.7E-13 73.9 6.2 46 2-49 12-57 (252)
463 COG3276 SelB Selenocysteine-sp 98.7 3.4E-08 7.5E-13 81.5 7.5 114 21-139 2-118 (447)
464 TIGR03796 NHPM_micro_ABC1 NHPM 98.7 1.6E-08 3.5E-13 91.7 6.2 44 4-49 492-535 (710)
465 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 7.2E-09 1.6E-13 81.4 3.5 45 3-49 13-57 (236)
466 PRK10771 thiQ thiamine transpo 98.7 3.8E-08 8.3E-13 77.1 7.5 39 8-48 16-54 (232)
467 TIGR02211 LolD_lipo_ex lipopro 98.7 7.9E-09 1.7E-13 80.4 3.6 44 4-49 18-61 (221)
468 TIGR01425 SRP54_euk signal rec 98.7 2.1E-06 4.5E-11 72.4 18.2 115 17-138 98-253 (429)
469 PRK11264 putative amino-acid A 98.7 9.3E-09 2E-13 81.5 4.1 45 3-49 15-59 (250)
470 PRK11124 artP arginine transpo 98.7 9E-09 1.9E-13 81.2 3.9 44 3-48 14-57 (242)
471 TIGR03797 NHPM_micro_ABC2 NHPM 98.7 2.5E-08 5.3E-13 90.2 7.1 44 4-49 466-509 (686)
472 PRK09544 znuC high-affinity zi 98.7 8.2E-09 1.8E-13 81.8 3.5 44 3-48 16-59 (251)
473 TIGR03375 type_I_sec_LssB type 98.7 9.2E-09 2E-13 93.0 4.2 44 4-49 478-521 (694)
474 TIGR02769 nickel_nikE nickel i 98.7 1E-08 2.2E-13 82.1 3.9 44 4-49 24-67 (265)
475 COG4674 Uncharacterized ABC-ty 98.7 3.3E-09 7.2E-14 78.5 1.0 45 2-48 16-60 (249)
476 PRK11160 cysteine/glutathione 98.7 9E-09 1.9E-13 91.1 4.0 45 4-50 353-397 (574)
477 COG4987 CydC ABC-type transpor 98.7 6.6E-09 1.4E-13 87.7 2.9 45 4-50 351-395 (573)
478 cd03214 ABC_Iron-Siderophores_ 98.7 1.1E-08 2.3E-13 77.1 3.8 44 3-48 11-54 (180)
479 PRK09493 glnQ glutamine ABC tr 98.7 1E-08 2.2E-13 80.8 3.7 44 3-48 13-56 (240)
480 TIGR02142 modC_ABC molybdenum 98.7 3.6E-08 7.8E-13 82.0 7.1 39 9-49 15-53 (354)
481 TIGR02323 CP_lyasePhnK phospho 98.7 1.1E-08 2.4E-13 81.2 3.9 44 3-48 15-58 (253)
482 cd03245 ABCC_bacteriocin_expor 98.7 1.4E-08 3E-13 79.0 4.3 43 4-48 17-59 (220)
483 TIGR03411 urea_trans_UrtD urea 98.7 1.1E-08 2.3E-13 80.8 3.7 44 3-48 14-57 (242)
484 cd03254 ABCC_Glucan_exporter_l 98.7 1.4E-08 3.1E-13 79.4 4.3 44 4-49 16-59 (229)
485 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.7 1.3E-08 2.9E-13 80.0 4.2 44 4-49 16-59 (238)
486 cd03299 ABC_ModC_like Archeal 98.7 4.1E-08 8.9E-13 77.1 6.9 42 5-48 13-54 (235)
487 cd03237 ABC_RNaseL_inhibitor_d 98.7 9.3E-08 2E-12 75.5 8.9 47 3-49 6-55 (246)
488 PRK10575 iron-hydroxamate tran 98.7 1E-08 2.2E-13 82.0 3.5 44 3-48 23-66 (265)
489 cd03238 ABC_UvrA The excision 98.7 8.9E-09 1.9E-13 76.9 2.9 36 4-41 8-43 (176)
490 TIGR01192 chvA glucan exporter 98.7 2.2E-08 4.7E-13 88.8 5.8 44 4-49 348-391 (585)
491 TIGR03005 ectoine_ehuA ectoine 98.7 1.1E-08 2.5E-13 81.1 3.7 45 3-49 12-56 (252)
492 PRK11629 lolD lipoprotein tran 98.7 1E-08 2.3E-13 80.4 3.4 43 4-48 22-64 (233)
493 cd03290 ABCC_SUR1_N The SUR do 98.7 1.5E-08 3.2E-13 78.7 4.2 45 3-49 13-57 (218)
494 PRK11831 putative ABC transpor 98.7 1E-08 2.2E-13 82.2 3.3 44 3-48 19-62 (269)
495 PRK14845 translation initiatio 98.7 5.1E-08 1.1E-12 90.0 8.1 101 31-138 473-592 (1049)
496 PRK13644 cbiO cobalt transport 98.7 1.3E-08 2.8E-13 81.8 3.9 43 4-48 15-57 (274)
497 PF00005 ABC_tran: ABC transpo 98.7 5.7E-09 1.2E-13 74.9 1.6 40 7-48 1-40 (137)
498 PRK11614 livF leucine/isoleuci 98.7 1.4E-08 3E-13 79.9 3.9 44 3-48 17-60 (237)
499 PRK11300 livG leucine/isoleuci 98.7 1.2E-08 2.6E-13 81.1 3.6 45 3-49 17-61 (255)
500 PRK03695 vitamin B12-transport 98.7 2.4E-08 5.1E-13 79.1 5.2 37 6-44 11-47 (248)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.97 E-value=5e-30 Score=197.76 Aligned_cols=166 Identities=43% Similarity=0.685 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------- 88 (240)
.+|+|+|.+|+||||++|+|+|...+.++....+.|..+......+ .+..+.|+||||+.+.......
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4899999999999999999999999888877778888888888877 9999999999999877653221
Q ss_pred --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCc
Q 036363 89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNR 166 (240)
Q Consensus 89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (240)
+++|++|+|++.. +++..+...++.+...||...+.++++|+|++|.+.+. .+++|+....+..++.+++.|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhHHhhhcCCE
Confidence 8899999999998 99999999999999999999999999999999988876 699999864456799999999999
Q ss_pred EEEEeCCCcchhhhHHHHHHHHH
Q 036363 167 CVLFDNKTKDAAKRTEQIGKLRS 189 (240)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~ll~ 189 (240)
|++|++...+..+...|+.+||.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~ 179 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLE 179 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHH
Confidence 99999995555455678888887
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.96 E-value=1.8e-28 Score=187.39 Aligned_cols=164 Identities=48% Similarity=0.725 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------- 88 (240)
++|+|+|.+|+|||||+|+|+|...+.++....+.|..+......+ .+..+.|+||||+.+.......
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999987777666667888888888888 8889999999999987542211
Q ss_pred --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCc
Q 036363 89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNR 166 (240)
Q Consensus 89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (240)
+++|++++|+++.. ++..+...++.+.+.||...+.++++|+|++|.+.+. .+++|+.. ....++.+++.|+++
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHh-ccHHHHHHHHHhCCe
Confidence 78999999999984 9999999999999999988889999999999998775 89999988 458899999999999
Q ss_pred EEEEeCCCcchhhhHHHHHHHHH
Q 036363 167 CVLFDNKTKDAAKRTEQIGKLRS 189 (240)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~ll~ 189 (240)
|+.|++... ......|+.+|++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~ 177 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLA 177 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHH
Confidence 999999875 3344567888876
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.88 E-value=9e-22 Score=156.42 Aligned_cols=144 Identities=24% Similarity=0.314 Sum_probs=113.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+++|.+|+||||++|+|+|...+..+.. .+.+.........+ .+..+.||||||+.+.......
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 448999999999999999999999875433222 22333333344445 7889999999999976322111
Q ss_pred --CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC
Q 036363 89 --DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD 164 (240)
Q Consensus 89 --~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
.++|+++||.+.+ .+++..+...++.+...||...+.++|+|+||+|.+++++.++++|+.+ ....++.++..+.
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~i~~~~ 192 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRVIHSGA 192 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHHHHHHh
Confidence 5799999997765 4788889999999999999999999999999999887777899999988 6788888887554
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.88 E-value=1.5e-21 Score=166.82 Aligned_cols=149 Identities=20% Similarity=0.301 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------- 88 (240)
.+|+|+|.+|+|||||+|+|+|...+.......+ |..+......+ .+..+.|+||||+.+.......
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 6899999999999999999999877666543333 44443344445 7889999999999987533211
Q ss_pred ---CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc-----ccHHHHhcccCCchHHHH
Q 036363 89 ---DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND-----ETLEDYLGRECPKPLKEI 159 (240)
Q Consensus 89 ---~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~-----~~~~~~~~~~~~~~~~~~ 159 (240)
.++|++|||+++. .....++...++.+.+.||...+.++|||+||+|.+++++ .++++|+.. +...++.+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq~~ 275 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQQA 275 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHHHH
Confidence 5789999999876 2334467899999999999999999999999999997543 589999988 77889999
Q ss_pred HHHhCCcEEEEe
Q 036363 160 LHLFDNRCVLFD 171 (240)
Q Consensus 160 ~~~~~~~~~~~~ 171 (240)
|..|.++++.|+
T Consensus 276 Irq~~g~~~l~n 287 (763)
T TIGR00993 276 IGQAVGDLRLMN 287 (763)
T ss_pred HHHhcCcceecc
Confidence 999999888777
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.84 E-value=3.6e-20 Score=145.36 Aligned_cols=123 Identities=27% Similarity=0.319 Sum_probs=98.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+|+|.+|+|||||+|+|+|...+..+.. .+.|..+......+ ++..+.+|||||+.+.......
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 348999999999999999999999876544432 34566666666666 7889999999999977421111
Q ss_pred -----CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcc
Q 036363 89 -----DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDE 142 (240)
Q Consensus 89 -----~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~ 142 (240)
..+|+++||...+ .+.+..+...++.+.+.||...+.++++|+||+|...++..
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 4789999998776 47888889999999999998889999999999998866533
No 6
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.79 E-value=3.2e-17 Score=131.11 Aligned_cols=147 Identities=23% Similarity=0.360 Sum_probs=103.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCC--CCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAG 85 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~----~~~--~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~ 85 (240)
..|-..+|+++|++|.|||||+|+|++....... ... ...+.........+. ++ ..++|+||||+.++...
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 4466689999999999999999999987432221 111 123333444444432 22 36789999999998766
Q ss_pred CcC------------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363 86 SEF------------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR 134 (240)
Q Consensus 86 ~~~------------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~ 134 (240)
... ..+|++||++.++ .++++-+...++.+.+. .++|.|+.|+
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~Ka 172 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKA 172 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecc
Confidence 443 7899999999987 68999999999988643 5799999999
Q ss_pred CCCCCCcccHHHHhcccCCchHHHHHHHhCCcEE-EEeCCC
Q 036363 135 DELEANDETLEDYLGRECPKPLKEILHLFDNRCV-LFDNKT 174 (240)
Q Consensus 135 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 174 (240)
|.+..+ .+..+... +...+..+..+++ +|+...
T Consensus 173 D~lT~~--El~~~K~~-----I~~~i~~~nI~vf~pyd~e~ 206 (373)
T COG5019 173 DTLTDD--ELAEFKER-----IREDLEQYNIPVFDPYDPED 206 (373)
T ss_pred ccCCHH--HHHHHHHH-----HHHHHHHhCCceeCCCCccc
Confidence 988664 55554444 5666666666666 455443
No 7
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.77 E-value=4.3e-18 Score=123.42 Aligned_cols=137 Identities=21% Similarity=0.246 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
.+|+++|.+++|||||+|+|+|.....+. .+|.|.......+.+ .+..+.++|+||.++....... .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n--~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGN--WPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEE--STTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecC--CCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 37999999999999999999999854333 367888887777777 8899999999999887655433 7
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEE
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVL 169 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (240)
.+|++++|+|++ .+ ..+...+.++.+. ..|+++++|++|.....+..+ ....+-+..+.+...
T Consensus 78 ~~D~ii~VvDa~-~l-~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~~i----------d~~~Ls~~Lg~pvi~ 140 (156)
T PF02421_consen 78 KPDLIIVVVDAT-NL-ERNLYLTLQLLEL-----GIPVVVVLNKMDEAERKGIEI----------DAEKLSERLGVPVIP 140 (156)
T ss_dssp SSSEEEEEEEGG-GH-HHHHHHHHHHHHT-----TSSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-EEE
T ss_pred CCCEEEEECCCC-CH-HHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcCCEE----------CHHHHHHHhCCCEEE
Confidence 999999999998 33 2334455555432 267999999999665432111 123444445778888
Q ss_pred EeCCCcc
Q 036363 170 FDNKTKD 176 (240)
Q Consensus 170 ~~~~~~~ 176 (240)
++.....
T Consensus 141 ~sa~~~~ 147 (156)
T PF02421_consen 141 VSARTGE 147 (156)
T ss_dssp EBTTTTB
T ss_pred EEeCCCc
Confidence 8877543
No 8
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=2.8e-17 Score=128.35 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
-.|++||.+++|||||+|.|+|......+. ...|+..........++..+.++||||++........ .
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~--k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSP--KPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecC--CcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 589999999999999999999987644433 3444444444444436788999999999988443322 9
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
.+|+++||+++...+...+...+..++. ...|+++++||.|.+.+.
T Consensus 85 dvDlilfvvd~~~~~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~~ 130 (298)
T COG1159 85 DVDLILFVVDADEGWGPGDEFILEQLKK-----TKTPVILVVNKIDKVKPK 130 (298)
T ss_pred cCcEEEEEEeccccCCccHHHHHHHHhh-----cCCCeEEEEEccccCCcH
Confidence 9999999999998899999888888875 235799999999988765
No 9
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=1.8e-16 Score=130.44 Aligned_cols=125 Identities=20% Similarity=0.233 Sum_probs=84.7
Q ss_pred ccCCccccCCCCC-----ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363 6 IDDDCELTSPSNG-----VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80 (240)
Q Consensus 6 ~~~~~~~~~~~~~-----~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (240)
..+.+++.+..|. ..+|+++|.+|+|||||+|+|+|....... ....+|.........+ ++..+.+|||||+.
T Consensus 34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~ 111 (339)
T PRK15494 34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIF 111 (339)
T ss_pred cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcC
Confidence 4556666666551 239999999999999999999997653221 1233444433344455 67789999999996
Q ss_pred CCCCCCc----------CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 81 DFSAGSE----------FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 81 ~~~~~~~----------~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
....... ...+|++++|+|....+...+..++..+... ..|.++|+||+|..
T Consensus 112 ~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 112 EPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred CCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 5432211 1689999999998876776666666555431 13467899999954
No 10
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.74 E-value=2.6e-17 Score=115.09 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc---C--------C
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---F--------D 89 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~--------~ 89 (240)
+|+|+|.+|+|||||+|+|++......+.. .+.|....+....+ ++..+.++||||+.+...... . .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999999654333333 45566665555666 788889999999987644322 1 8
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSG 133 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~ 133 (240)
.+|+++||+++..+....+...++.+. ..+|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 899999999987544445566666662 23789999997
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=4e-17 Score=134.25 Aligned_cols=111 Identities=28% Similarity=0.302 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--cC---------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--EF--------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~--------- 88 (240)
..|+|||.+++|||||+|+|+|........ ..|+|....+....| .+..+.++||+|+.+..... ..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D-~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD-TPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec-CCCCccCCccceeEE-cCceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 589999999999999999999987654433 478999999999999 88889999999999765321 11
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+|++|||+|...+++..|..+.+.|+. ..+|+++|+||+|..
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~-----~~kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRR-----SKKPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEEcccCc
Confidence 89999999999999999999999888862 236899999999976
No 12
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=5.5e-16 Score=123.94 Aligned_cols=144 Identities=20% Similarity=0.267 Sum_probs=97.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCCCc
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAGSE 87 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~ 87 (240)
|-..+|+++|++|+|||||+|+|++......... ....|........... ++ ..+.+|||||+.++.....
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3458999999999999999999999875443221 1223333332222221 34 3689999999987654211
Q ss_pred C------------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 88 F------------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 88 ~------------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
. ..+|+++|+++++ .++...+...++.+.. ..|+++|+||+|.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCc
Confidence 0 5789999999987 4677888888888753 2579999999998
Q ss_pred CCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 137 LEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
+... .+..+.. .+.+.+...+.+++.|...
T Consensus 156 l~~~--e~~~~k~-----~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 156 LTPE--ELKEFKQ-----RIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CCHH--HHHHHHH-----HHHHHHHHcCCceECCCCC
Confidence 7643 3333332 3667777777777776654
No 13
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.71 E-value=7.6e-16 Score=115.95 Aligned_cols=114 Identities=16% Similarity=0.276 Sum_probs=78.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------- 88 (240)
....+|+++|++|+|||||+|.|++...........+.|..+.++.. + ..+.+|||||+.........
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35589999999999999999999987522221223344554443322 2 36889999998654321110
Q ss_pred -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..++++++|++++.+++..+...+..+.. ...|+++++||+|....
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE-----RGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCH
Confidence 35689999999998888888776665543 13579999999996643
No 14
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.2e-15 Score=119.95 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=101.4
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCC
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFS 83 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~ 83 (240)
..+..|-..+++++|++|.|||||+|+|++...... .......|........... ++ ..++|+||||+.+..
T Consensus 14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 345567779999999999999999999988743221 1111222444444444442 22 367899999999876
Q ss_pred CCCcC-----------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeC
Q 036363 84 AGSEF-----------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSG 133 (240)
Q Consensus 84 ~~~~~-----------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~ 133 (240)
..... ..+|++||++.++ .++.+-|...++.+... .++|.|+.|
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~K 167 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAK 167 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeec
Confidence 55433 6899999999988 45999999999988643 569999999
Q ss_pred CCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 134 RDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 134 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
+|.+.+. .+..+... +...+..+..+++.|...
T Consensus 168 aD~lT~~--El~~~K~~-----I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 168 ADTLTKD--ELNQFKKR-----IRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred cccCCHH--HHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence 9988764 44443333 444455555555544443
No 15
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.69 E-value=4.6e-16 Score=115.16 Aligned_cols=114 Identities=21% Similarity=0.307 Sum_probs=76.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
+|+++|++|+|||||+|+|++..... ......+.|....+....+..+..+.+|||||+..+...... .++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999999753211 111123445555555555522678999999998766422111 789999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+++.+.......+..+. ..+ .+|+++++||+|...
T Consensus 82 ~d~~~~~~~~~~~~~~~~~-~~~---~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 82 VAADEGIMPQTREHLEILE-LLG---IKRGLVVLTKADLVD 118 (164)
T ss_pred EECCCCccHhHHHHHHHHH-HhC---CCcEEEEEECccccC
Confidence 9998655555545444332 222 247999999999543
No 16
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.69 E-value=7.6e-16 Score=123.28 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FDE 90 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~~ 90 (240)
+|+++|++|+|||||+|+|+|........ ..++|.... ......++..+.++||||+........ ...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~-~~~TTr~~i-~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP-KAQTTRNRI-SGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC-CCCcccCcE-EEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 79999999999999999999986432222 123343322 233332566789999999976532211 178
Q ss_pred ceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 91 IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 91 ~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++++|+|++...+.. ...+..+.. ...|+++|+||+|...
T Consensus 80 aDvvl~VvD~~~~~~~~-~~i~~~l~~-----~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG-EFVLTKLQN-----LKRPVVLTRNKLDNKF 121 (270)
T ss_pred CCEEEEEEECCCCCchH-HHHHHHHHh-----cCCCEEEEEECeeCCC
Confidence 99999999998655443 334444432 2367999999999653
No 17
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.69 E-value=7e-16 Score=113.22 Aligned_cols=111 Identities=26% Similarity=0.304 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|++|+|||||++++++........ ..+.+.........+ .+..+.+|||||+.+...... ..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999876422222 234444444444555 677899999999987654311 17
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.+|++++|+|++++.+..+...+.. ....|+++|+||+|....
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence 8999999999997777766555443 123679999999997654
No 18
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.68 E-value=1.3e-15 Score=113.36 Aligned_cols=114 Identities=24% Similarity=0.202 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------- 88 (240)
++|+++|++|+|||||+|+|++....... ..+.|.........+ .+..+.+|||||+.+.......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 47999999999999999999997643221 123344444444444 5678999999998643221110
Q ss_pred CCceEEEEEEECCCCCC--HH-HHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 DEIHAALVVFSVRSRFS--QE-EEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~--~~-~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
...|++++|+|+++..+ .. ...++..+...+. ..|+++|+||+|....
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF 128 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch
Confidence 23689999999985433 22 2345555554332 3689999999996543
No 19
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=125.49 Aligned_cols=144 Identities=20% Similarity=0.267 Sum_probs=108.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+++|.+++|||||+|+|+|......+. ..|+|...-.....+ +++.+.++||.|+-.-......
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 34899999999999999999999987654443 367777777777777 8999999999999876555443
Q ss_pred ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC
Q 036363 89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD 164 (240)
Q Consensus 89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
..+|++++|+|++.+++.++......+.+. ..++++|+||||.+..+...++++... +...+....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-----CCCeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence 889999999999999999999999888653 256999999999887642344444433 344443333
Q ss_pred -CcEEEEeCC
Q 036363 165 -NRCVLFDNK 173 (240)
Q Consensus 165 -~~~~~~~~~ 173 (240)
.+.+.++..
T Consensus 325 ~a~i~~iSA~ 334 (444)
T COG1160 325 FAPIVFISAL 334 (444)
T ss_pred CCeEEEEEec
Confidence 344455544
No 20
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=3.2e-15 Score=111.46 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------- 88 (240)
+.+|+++|++|+|||||+|+|++......... .+.+.......... .+..+.+|||||+.+.......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDI-AGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCC-CCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 47899999999999999999998754322221 23333333333444 6677899999998765321111
Q ss_pred ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|+.++.+......+..+.. . ..|+++++||+|....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILE---E--GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh---c--CCCEEEEEeccccCCc
Confidence 67899999999997777766655554432 1 2679999999996654
No 21
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.67 E-value=1.1e-15 Score=113.41 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
+|+++|++|+|||||++++++...........+ ........... ....+.+|||||...+...... ..+|++++|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG--IDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--eeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 799999999999999999999875443222222 22222223321 2346789999998766543333 889999999
Q ss_pred EECCCCCCHHH-HHHHHHHHHHhCC---CcCCeEEEEEeCCCCC
Q 036363 98 FSVRSRFSQEE-EATLHSLQTLFGK---NCFDYMIVVFSGRDEL 137 (240)
Q Consensus 98 ~~~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~i~v~~~~D~~ 137 (240)
+|++++.+... ..++..+...+.. ....|+++|+||+|..
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 99986655443 3444555544432 1347899999999965
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.67 E-value=1.5e-15 Score=113.25 Aligned_cols=116 Identities=21% Similarity=0.138 Sum_probs=74.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc-EEEEEeCCCCCCCCCCCcC---------CC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ-VVNVIDTPGLFDFSAGSEF---------DE 90 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~---------~~ 90 (240)
.|+++|++|+|||||+|+|++.....+.. .+.|.........+ .+. .+.+|||||+.+....... ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~--~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADY--PFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCC--CccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 58999999999999999999865421111 22344444444444 554 8899999998643322111 56
Q ss_pred ceEEEEEEECCCC-CCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 91 IHAALVVFSVRSR-FSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 91 ~~~~l~v~~~~~~-~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|++++|+|+++. -+.... .+.+.+..........|+++|+||+|....
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 8999999999855 344433 344444443221124678999999996544
No 23
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.67 E-value=1.4e-15 Score=121.53 Aligned_cols=145 Identities=23% Similarity=0.299 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCCCcC-
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAGSEF- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~- 88 (240)
..+|+++|.+|+|||||+|+|++......... ....+........... ++ ..+.++||||+.+.......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 47999999999999999999999765444210 1112222222222221 22 26789999999876544322
Q ss_pred ----------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ----------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ----------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++||+++++ .++++.+...++.|.. ..|+|.|++|+|.+.+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~------~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK------RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT------TSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc------cccEEeEEecccccCH
Confidence 8899999999997 5789999998888853 2679999999998875
Q ss_pred CcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCCcc
Q 036363 140 NDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKD 176 (240)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (240)
. ++..+... +..-++..+.+++.|.....+
T Consensus 158 ~--el~~~k~~-----i~~~l~~~~I~~f~f~~~~~~ 187 (281)
T PF00735_consen 158 E--ELQAFKQR-----IREDLEENNIKIFDFPEDDDD 187 (281)
T ss_dssp H--HHHHHHHH-----HHHHHHHTT--S---------
T ss_pred H--HHHHHHHH-----HHHHHHHcCceeecccccccc
Confidence 3 55555444 677778888888777766443
No 24
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.67 E-value=2.8e-15 Score=110.73 Aligned_cols=115 Identities=19% Similarity=0.155 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.+|+++|++|+|||||++++++...........+.+... ....+. ....+.+|||||...+...... ..+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKV--KTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEE--EEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 379999999999999999999876533222222222222 222221 2246789999998766544433 78999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
|+|.++..+.... .++..+..... ....|+++|+||+|..
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 9999865555543 33344444332 2346789999999965
No 25
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.67 E-value=1.3e-15 Score=117.07 Aligned_cols=118 Identities=26% Similarity=0.223 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------C
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------F 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~ 88 (240)
..+|+++|++|||||||+|.|++......+. ...|.........+.+...+.+|||||+.+...... .
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999976432222 223333333444452334899999999865322111 0
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|++++.+......+..+...++. ...|+++|+||+|....
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~-~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGA-EDIPMILVLNKIDLLDD 168 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc-CCCCEEEEEEccccCCh
Confidence 578999999999866665554333333333332 23679999999996554
No 26
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.66 E-value=7.2e-16 Score=114.08 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.+|+++|.+|+|||||++++++...........+.+. ........ ....+.+|||||...+...... ..+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL--YKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEE--EEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 3799999999999999999987654332222111111 11122221 2336789999999887665554 88999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
|+|++++.+..+ ..++..+..... ..|+++|+||+|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl 116 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDL 116 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccC
Confidence 999986666554 344555544322 2679999999995
No 27
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2.2e-15 Score=118.95 Aligned_cols=113 Identities=23% Similarity=0.246 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------- 88 (240)
..+|++.|.+++|||||++.|++..+-... -+.+|......+... +...+.++||||+.|-.-...+
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~--YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAP--YPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCC--CCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 489999999999999999999998753222 245677777777777 7789999999999987655544
Q ss_pred -CCceEEEEEEECC--CCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 -DEIHAALVVFSVR--SRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 -~~~~~~l~v~~~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.-.++++|++|++ ++++.++ ...++.+...|. .|+++|+||.|...
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~ 294 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD 294 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence 7778899999998 6777665 577888887776 57999999999653
No 28
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6e-15 Score=108.04 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=89.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
..+|+|+|.+|+|||-|+.++.+.....+...+.|.... .....+. ....+.||||.|+..|.+.... +++|++|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~--~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFK--IRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEE--EEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 489999999999999999999998876665555544443 3444441 2347899999999999876666 9999999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|++...|.+.. .++..+...... ..|.++|.||+|..+.
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~--~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASE--NVPKLLVGNKCDLTEK 129 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccC--CCCeEEEeeccccHhh
Confidence 99999988888764 555566555433 2578999999996544
No 29
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.65 E-value=1.6e-15 Score=116.90 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeEEEEEEEEeCCcEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMHRTVLKDGQVV 71 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (240)
+|+++|+.|+|||||+++|++....... ....+.|.......+.+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999865432110 01145566666666666 78899
Q ss_pred EEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 72 NVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 72 ~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.++||||+.++...... ..+|++++|+|++.+........+..+. .++ .+++++|+||+|...
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~-~~~---~~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILS-LLG---IRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHH-HcC---CCcEEEEEEchhccc
Confidence 99999998765432222 7899999999998776666555444443 222 256788999999654
No 30
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.65 E-value=1.5e-15 Score=112.74 Aligned_cols=117 Identities=24% Similarity=0.198 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|++|+|||||++++++........+..+.+. ........ ....+.+|||||...+...... ..+|++++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSK-NICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECC-EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 6899999999999999999998764333222222111 11111111 2346789999999887654433 789999999
Q ss_pred EECCCCCCHHH-HHHHHHHHHHhCCC-cCCeEEEEEeCCCCCC
Q 036363 98 FSVRSRFSQEE-EATLHSLQTLFGKN-CFDYMIVVFSGRDELE 138 (240)
Q Consensus 98 ~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~i~v~~~~D~~~ 138 (240)
++++++.+... ..++..+....+.. ...|+++|.||+|...
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 99997666654 44555565554322 3467999999999544
No 31
>PRK00089 era GTPase Era; Reviewed
Probab=99.65 E-value=1.7e-15 Score=122.70 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
..|+++|++|||||||+|+|+|........ ...|...........++..+.++||||+......... .
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~--~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSP--KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCC--CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999986533222 2222222222222224568999999999875432111 7
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+|++++|+|+++.++..+...+..+.. ...|+++|+||+|...
T Consensus 84 ~~D~il~vvd~~~~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 84 DVDLVLFVVDADEKIGPGDEFILEKLKK-----VKTPVILVLNKIDLVK 127 (292)
T ss_pred cCCEEEEEEeCCCCCChhHHHHHHHHhh-----cCCCEEEEEECCcCCC
Confidence 8999999999997677766666665542 2357999999999763
No 32
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.65 E-value=1.5e-15 Score=113.31 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCC-CCcC--CCceE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSA-GSEF--DEIHA 93 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~-~~~~--~~~~~ 93 (240)
..+|+++|++|+|||||++++++......... ............+ ++ ..+.+|||||...+.. .... ..+|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~ 78 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEA--TIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHYYRNVHA 78 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcccc--ceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCE
Confidence 37899999999999999999987654322221 1112222223333 33 4678999999877642 2222 78999
Q ss_pred EEEEEECCCCCCHHHHHHHH-HHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEEATLH-SLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+......+. .+.... .....|+++|.||+|...
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 79 VVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE 123 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence 99999999766666644433 343332 223468999999999543
No 33
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.65 E-value=1e-15 Score=112.39 Aligned_cols=110 Identities=25% Similarity=0.297 Sum_probs=79.1
Q ss_pred EEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC----------cCCCce
Q 036363 23 VLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS----------EFDEIH 92 (240)
Q Consensus 23 ~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----------~~~~~~ 92 (240)
+++|.+|+|||||+|.|++........ ..+.|.........+ .+..+.+|||||+.+..... ....+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEEEE-CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 589999999999999999875322222 234455555555556 67889999999998865410 017899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++++|+++.++.+..+...+..+... ..|+++|+||+|....
T Consensus 79 ~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~ 120 (157)
T cd01894 79 VILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKE 120 (157)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCCh
Confidence 99999999876666666555555432 2679999999996543
No 34
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=1.1e-15 Score=116.22 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=83.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
..+|+++|+.++|||||+++|++.....+ .....+.|.......+.+ ++..+.++||||+.++..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYIK 80 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHHHH
Confidence 37899999999999999999986411000 011345666665555555 677899999999876543
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.... ..+|++++|+++..+....+...+..+... + .+++++++||+|...
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~ 132 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-G---VPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCcEEEEEeCCCCCC
Confidence 3322 889999999999877888877777776532 2 245889999999763
No 35
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=1.5e-15 Score=112.75 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++.+...........+ .........+ ++ ..+.+|||||...+...... ..+|+++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIG--VDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccc--eEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 7999999999999999999987654332222121 2222233444 44 36789999998766543333 7899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|++++++.+... ..++..+.... ....|+++|+||+|....
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccc
Confidence 9999986655554 34555554332 223678999999996543
No 36
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.64 E-value=3.9e-15 Score=113.53 Aligned_cols=114 Identities=19% Similarity=0.313 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC-CccccC-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRR-AFKSRA-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
.++|+++|.+|+|||||++++++.. .+.... ...+.+.........+ ++..+.+|||||+.++..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFGG 80 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHHH
Confidence 4799999999999999999998621 111110 1133444444444555 677899999999988765
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.... ..+|++++|+|++++........+..+.. . ..|+++|+||+|...
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---L--GLKPIVVINKIDRPD 131 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---c--CCCEEEEEECCCCCC
Confidence 4433 88999999999986554444444444322 1 256899999999654
No 37
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=3.6e-15 Score=122.98 Aligned_cols=116 Identities=24% Similarity=0.209 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--c--------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--E--------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~--------~~ 89 (240)
.+|+++|.+|+|||||+|+|++.....+.. .+.|.........++++..+.+|||||+....+.. . ..
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~--~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQ--LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccC--CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999976432222 34455555555555456789999999995422111 1 16
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+|++++|+|++++.+......+..+...++. ...|+++|+||+|...
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~-~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGA-EDIPQLLVYNKIDLLD 315 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-CCCCEEEEEEeecCCC
Confidence 88999999999876666554444444444442 1367999999999654
No 38
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.64 E-value=5e-15 Score=109.37 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=76.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|++|+|||||++++++.....+.. ...+.........+ ++ ..+.+|||||...+...... ..+|++++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQ--ATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 78 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCC--CceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 79999999999999999999876543322 22233333333334 33 35789999997766443333 88999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|++++++.+... ..++..+....+. ..|+++++||+|...
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~ 119 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD 119 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence 999986555544 3444444433221 368999999999644
No 39
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.64 E-value=2.9e-15 Score=111.43 Aligned_cols=111 Identities=23% Similarity=0.179 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe---CCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK---DGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
.+|+++|++|+|||||+++++......... .|.........+. ....+.+|||||...+...... ..+|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCA 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEE
Confidence 379999999999999999998654322211 1222222222211 2346789999999877655444 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++|+|.+++.+.... .++..+....+ ..|+++|+||+|..
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 77 IIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 999999866665543 44455555433 47899999999954
No 40
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=6.7e-15 Score=109.39 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|+.|+|||||++++++...........+.. ........ ++ ..+.+|||||...+...... .++|+++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE--FGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCccccee--EEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999875433222212211 11122223 33 36789999998776554433 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+.... .++..+.... ....|+++|.||+|...
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLEA 121 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc
Confidence 99999976555543 3333333321 12367999999999543
No 41
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.64 E-value=6e-15 Score=108.86 Aligned_cols=114 Identities=23% Similarity=0.239 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++...........+.. ....... ++ ..+.+|||||...+...... ...|+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i 77 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS---YRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 77 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe---EEEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence 589999999999999999999876432222211111 1122233 33 34678999998776554443 7899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++.+++.+..+. .++..+..... ....|+++|+||+|...
T Consensus 78 ~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 78 CVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 99999865554443 33444444322 22367999999999554
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.63 E-value=2.6e-15 Score=111.88 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++...........+.+.. ...... ++ ..+.+|||||...+...... ..+|+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 79999999999999999999987653333322222222 222223 32 36789999997765443332 7899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+.... .++..+..... ...|+++|.||.|...
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES 123 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 99999855554442 33333433321 2367999999999653
No 43
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=4.4e-14 Score=107.82 Aligned_cols=113 Identities=15% Similarity=0.272 Sum_probs=74.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+++|++|+|||||+|+|++...........+.|....... .+..+.+|||||+.........
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 448999999999999999999998642222222334444433322 2467899999997653221110
Q ss_pred ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
...+++++|++.+.+.+..+...++.+.. . ..++++++||+|.+..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~----~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-Y----GIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-c----CCcEEEEEECcccCCH
Confidence 34578888888876676666555555432 1 2568999999997654
No 44
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.63 E-value=1.3e-14 Score=110.92 Aligned_cols=111 Identities=22% Similarity=0.232 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc---ceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGV---TSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------~ 89 (240)
.+|+++|++|+|||||+|+|+|...+..+....+. +..... +.......+.+|||||+......... .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 68999999999999999999997654433332221 222211 11112346889999999765332221 5
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..|++++|.+ .+++..+...++.+... + .++++|+||+|...+
T Consensus 80 ~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~ 122 (197)
T cd04104 80 EYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLS 122 (197)
T ss_pred CcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhh
Confidence 6788888743 47888888888888654 2 568999999998644
No 45
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.63 E-value=5.3e-15 Score=109.41 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|++|+|||||+|.++|......... ...+.......... .+..+.+|||||+........ ..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999764322221 12222222222222 456789999999986643321 18
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+|++++|+++++..+......+..+... ..|+++|+||+|..
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 88999999999966555555555555432 25789999999965
No 46
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.63 E-value=2.4e-15 Score=117.78 Aligned_cols=113 Identities=23% Similarity=0.272 Sum_probs=82.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccc--c--------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKS--R--------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
+|+++|+.|+|||||+++|+....... + ....+.+.........+ ++..+++|||||+.++..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchHH
Confidence 489999999999999999986432111 0 01224445555666677 888999999999988765
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.... ..+|++++|+++..+........+..+... ..|+++++||+|....
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~~a 131 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-----NIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccccCC
Confidence 4333 889999999999987777766777766432 2568899999996543
No 47
>PTZ00369 Ras-like protein; Provisional
Probab=99.63 E-value=3e-14 Score=108.20 Aligned_cols=113 Identities=24% Similarity=0.207 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|.+|+|||||++++++........++.+.+. ...... ++ ..+.+|||||..++...... ..+|+++
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY---RKQCVI-DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE---EEEEEE-CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 8999999999999999999998764333222222111 112223 33 35678999999887766544 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|+|++++.+.... .++..+..... ....|+++|.||+|..
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLD 123 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 99999866665543 34444444322 2245799999999943
No 48
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.63 E-value=4.9e-15 Score=125.58 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|++|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.++..... ..
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 899999999999999999999875422222 245566665566666 788899999999976543221 17
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+|++++|+|++++.+..+. ++..+.. ...|+++|+||+|..
T Consensus 282 ~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLK 323 (442)
T ss_pred hCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCC
Confidence 89999999999977776654 4433321 135799999999964
No 49
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=6e-15 Score=109.40 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=88.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------- 88 (240)
....-|+++|.+++|||||||+|+|......-..++|.|....++... + .+.++|.||+.-.......
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~---~-~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD---D-ELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec---C-cEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 344799999999999999999999976433333456777777766542 2 3789999998865543322
Q ss_pred -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
....+++.++|+.......|.+.++++... ..|+++|+||+|++...
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKS 151 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCChh
Confidence 568889999999988888899888888643 36799999999999764
No 50
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.63 E-value=3.8e-15 Score=114.36 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=74.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEEe--------------------------CC-----
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVLK--------------------------DG----- 68 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------~~----- 68 (240)
+|+++|++|+|||||+.+|++... ...+....+.+..+.+..+.|. .+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 799999999999999999988732 2223333444444444443331 02
Q ss_pred -cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 69 -QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 69 -~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+.+|||||+.++...... ..+|++++|+|++.+ ........+..+.. .+ .+|+++|+||+|...
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivvNK~Dl~~ 151 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQNKIDLVK 151 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEEEchhccC
Confidence 67899999997665332222 778999999999853 33444445544422 22 257899999999654
No 51
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=2.8e-15 Score=127.82 Aligned_cols=112 Identities=25% Similarity=0.282 Sum_probs=86.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------CC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------DE 90 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~~ 90 (240)
+|+++|.+|+|||||+|+|++....... ...+.|....+....+ .+..+.+|||||+......... ..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 4899999999999999999997642222 2356677777777778 8889999999998643221111 78
Q ss_pred ceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 91 IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 91 ~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|++++|+|+..+.+..+......+.+. ..|+++|+||+|....
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE 122 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc
Confidence 9999999999988888887777777642 2579999999996543
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.63 E-value=8.4e-15 Score=108.24 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++.+++...........+ .......... ++ ..+.+|||||...+...... ..+|+++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG--VEFGSKIIRV-GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--eeEEEEEEEE-CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence 3799999999999999999998764333222222 1111122222 23 46789999998766544333 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+.... .++..+..... ...|+++++||+|...
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 119 (161)
T cd04113 78 LVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcch
Confidence 99999976655543 33344433322 2367999999999654
No 53
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.63 E-value=3.7e-15 Score=110.24 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++...........+ ......... ++ ..+.+|||||...+...... ..+|+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh---hhEEEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence 6899999999999999999997654322211111 111122223 33 35678999999887665444 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+++++..+..+. .++..+...... ...|+++|+||+|...
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 120 (163)
T cd04136 78 LVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED 120 (163)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 99999866555543 344445443222 2367999999999543
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.63 E-value=3.9e-15 Score=110.55 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|+.|+|||||++++++........++.+. ......... ++ ..+.+|||||...+...... ..+|+++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l 78 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI--DFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee--EEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence 68999999999999999999987643222222221 111122222 32 46789999998766544333 8999999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|.+++.+... ..++..+..... ...|+++|+||+|...
T Consensus 79 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 120 (165)
T cd01865 79 LMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMED 120 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCc
Confidence 9999986544443 233444433221 2367999999999644
No 55
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.63 E-value=1.9e-15 Score=112.35 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=76.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.|+++|++|+|||||+|+|++...... ...+.|........... .+..+.+|||||...+...... ..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 599999999999999999998654322 12234444443444441 2568899999998765433332 78999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+++++.........+..+.. ...|+++|+||+|...
T Consensus 80 v~d~~~~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 80 VVAADDGVMPQTIEAIKLAKA-----ANVPFIVALNKIDKPN 116 (168)
T ss_pred EEECCCCccHHHHHHHHHHHH-----cCCCEEEEEEceeccc
Confidence 999986665555555555432 1257999999999653
No 56
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.63 E-value=2.4e-15 Score=111.80 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=74.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|++|+|||||++.|++......+.. ....|.........+ ++..+.+|||||+..+...... ..+|++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~ 79 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLRSLWDKYYAECHAIIY 79 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 589999999999999999987543211111 122333334444555 6788999999999876554333 88999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|+++..+... ...+..+..... ....|+++++||+|...
T Consensus 80 vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 80 VIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPD 121 (167)
T ss_pred EEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEcccccc
Confidence 999985433222 223333322111 12367999999999543
No 57
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.63 E-value=6e-15 Score=114.50 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=78.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
....+|+++|..|+|||||+++++............+.+... ...... ....+.+|||||...+...... ..+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 344899999999999999999987655432222222222221 122221 2347889999999887665544 88999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|+|+|++++.+.... .++..+..... ..|+++|+||+|..
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 130 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence 9999999977666653 44455554322 36799999999953
No 58
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=4.3e-15 Score=113.93 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++.........+. ........+.+. ....+.+|||||...+...... ..+|+++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~--~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI--GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--eEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence 379999999999999999999875432222111 111222223331 1346789999999777654444 8999999
Q ss_pred EEEECCCCCCHHHHH-HHHHHHHHhC--CCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEEA-TLHSLQTLFG--KNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~~-~l~~l~~~~~--~~~~~~~i~v~~~~D~~ 137 (240)
+|+|++++.+..... ++..+...+. .....|+++|+||.|..
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 999998766666543 3334433221 12346899999999954
No 59
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=5.3e-15 Score=127.15 Aligned_cols=113 Identities=26% Similarity=0.273 Sum_probs=85.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---------- 87 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------- 87 (240)
...+|+|||.+|+|||||+|+|++....... ...+.|....+....+ .+..+.+|||||+........
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3478999999999999999999987643222 3456666666666667 788899999999874322111
Q ss_pred CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 88 FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 88 ~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
...+|++|+|+|++++.+..+..+...+.. ...|+++|+||+|..
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-----~~~piilV~NK~Dl~ 159 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATDEAVARVLRR-----SGKPVILAANKVDDE 159 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCC
Confidence 078999999999998888777666666653 236799999999964
No 60
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.62 E-value=2.1e-14 Score=106.55 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=74.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEE
Q 036363 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFS 99 (240)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~ 99 (240)
|+++|++|+|||||++.+++........+..+. ....... .+..+.+|||||...+...+.. .++|++++|+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~----~~~~i~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF----NSVAIPT-QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCc----ceEEEee-CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 789999999999999999987543322222221 1223334 5678899999999877655444 89999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 100 VRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 100 ~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+++.+... +..+..+. ......|+++|.||.|...
T Consensus 77 ~t~~~s~~~~~~~l~~~~---~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 77 SADSERLPLARQELHQLL---QHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred CCCHHHHHHHHHHHHHHH---hCCCCCcEEEEEeCcCCcC
Confidence 986554433 23333332 2223478999999999543
No 61
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.62 E-value=9.6e-15 Score=110.59 Aligned_cols=112 Identities=22% Similarity=0.237 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS 86 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (240)
+|+++|.+|+|||||+|+|++......... ..+.+.........+ .+..+.+|||||+.++....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHHHHHH
Confidence 489999999999999999998765432211 112333434444445 56788999999987654333
Q ss_pred cC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 87 EF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 87 ~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.. ..+|++++|+|+....+......+..+.. ...|+++|+||+|...
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 22 78999999999987776666666655543 2367999999999775
No 62
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1.6e-14 Score=123.39 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=86.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+++|++|+|||||+|+|++......+. ..+.|.........+ ++..+.++||||+.........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 34899999999999999999999876433332 245555554444555 7788999999998765443211
Q ss_pred ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+|++++|+|++.+.+..+...+..+.+. ..|+++|+||+|...
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-----GRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCCC
Confidence 678999999999988999888777766532 257999999999663
No 63
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.62 E-value=1.9e-15 Score=120.42 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=100.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccc----------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
+|+++|+.|+|||||+++|+....... .....+.|.......+.| ++..++++||||+.++..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHHH
Confidence 589999999999999999974221100 112346677777777888 889999999999987765
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc----ccHHHHhcccC------
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND----ETLEDYLGREC------ 152 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~----~~~~~~~~~~~------ 152 (240)
.... ..+|++++|+|+..+....+...+..+... ..|+++++||+|....+. ..+.+.+....
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-----NVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence 4433 888999999999988887777777766432 256889999999664331 22333332210
Q ss_pred ---CchHHHHHHHhCCcEEEE
Q 036363 153 ---PKPLKEILHLFDNRCVLF 170 (240)
Q Consensus 153 ---~~~~~~~~~~~~~~~~~~ 170 (240)
...++++++....+.+.|
T Consensus 155 isa~~~f~g~vd~~~~~a~~~ 175 (270)
T cd01886 155 IGEEDDFRGVVDLIEMKALYW 175 (270)
T ss_pred cccCCCceEEEEccccEEEec
Confidence 234566677777777777
No 64
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.62 E-value=6e-15 Score=117.44 Aligned_cols=146 Identities=19% Similarity=0.250 Sum_probs=96.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccc--cCC------------------CCCcceeEEEEEEEEeCCcEEEEEeCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKS--RAS------------------SSGVTSTCEMHRTVLKDGQVVNVIDTPG 78 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (240)
.++|+++|+.|+|||||+++|+....... +.. ..+.+.......+.| ++..+++|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 37999999999999999999985322111 100 123444555566777 889999999999
Q ss_pred CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc----ccHHHHhccc-
Q 036363 79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND----ETLEDYLGRE- 151 (240)
Q Consensus 79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~----~~~~~~~~~~- 151 (240)
+.++...... ..+|++++|++++.+........++.+.. ...|+++++||+|...... ..+.+.+...
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~ 155 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-----RGIPIITFINKLDREGRDPLELLDEIEEELGIDC 155 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-----cCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCc
Confidence 9877543222 78999999999987776665565554432 1256899999999654431 2233332221
Q ss_pred --------CCchHHHHHHHhCCcEEEE
Q 036363 152 --------CPKPLKEILHLFDNRCVLF 170 (240)
Q Consensus 152 --------~~~~~~~~~~~~~~~~~~~ 170 (240)
....+.++++....+.+.|
T Consensus 156 ~~~~~Pi~~~~~~~g~vd~~~~~a~~~ 182 (267)
T cd04169 156 TPLTWPIGMGKDFKGVYDRRTGEVELY 182 (267)
T ss_pred eeEEecccCCCceEEEEEhhhCEEEEe
Confidence 1234466667777777877
No 65
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.62 E-value=1.9e-14 Score=122.80 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=85.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------- 88 (240)
..+|+++|.+|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.........
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 4789999999999999999999976432222 244555544445555 6778999999999776543311
Q ss_pred ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+|++++|+|+.++.+..+...+..+.+. ..|+++|+||+|.+
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 789999999999988998888777766532 25799999999976
No 66
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.62 E-value=8.7e-15 Score=108.20 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=73.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe---CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK---DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
+|+++|++|+|||||++.+++......... ............+. ....+.+|||||...+...... +.+|+++
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v 79 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKK--TIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI 79 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCC--cEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence 799999999999999999998754322111 11122111222221 2346889999998766554433 8999999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|++++++.+.... .++..+..... ..|+++|+||.|....
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 80 LVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQ 121 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccc
Confidence 99999865554443 33333333222 3679999999996543
No 67
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.62 E-value=1.4e-14 Score=107.64 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++......... +.+.......... ++ ..+.+|||||...+...... +.+|+++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii 79 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYIS--TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 79 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence 6899999999999999999998764332222 2222222223333 33 36789999998766544333 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|+++..+.... .++..+.... ....|+++|.||+|...
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTD 121 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhccc
Confidence 99999865554443 3333343322 12357999999999544
No 68
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.62 E-value=1.3e-14 Score=109.68 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++.+++..... ..++.+.+. ........ .+..+.+|||||...+...+.. ..+|+++
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccce--eEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 789999999999999999998765432 222122121 11122110 3457899999998766443333 7899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|+|+++..+... ...+..+...... ...|+++|+||+|..
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~ 122 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLP 122 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence 9999985433333 2233334333222 236799999999954
No 69
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.62 E-value=1.1e-14 Score=112.86 Aligned_cols=117 Identities=16% Similarity=0.087 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++.+++........ ...+.........+.+ ...+.+|||||...+...... ..+|+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~--~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYK--QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence 379999999999999999999876432222 1112222222233322 347789999997665444333 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGK-NCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~ 138 (240)
+|+|+++..+.... .++..+...... ...+|+++|.||+|...
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 99999976666553 344555554432 23357899999999643
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.62 E-value=5.2e-15 Score=109.56 Aligned_cols=115 Identities=26% Similarity=0.217 Sum_probs=75.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++++++...........+ ........+ ++ ..+.+|||||...+...... ...|++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE---DSYTKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGF 77 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc---ceEEEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEE
Confidence 37999999999999999999998654322211111 111122233 44 35789999998877654443 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+++++..+.... .++..+..... ....|+++++||+|...
T Consensus 78 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 78 LLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 999999865554442 33344443322 22367999999999543
No 71
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.62 E-value=7.4e-15 Score=112.46 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=75.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++.+++.........+.+ .......+.+ .+ ..+.+|||||...+...... ..++++
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--VDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccc--ceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 48999999999999999999998764322222121 1222222333 33 36789999998776544443 788999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+.... .++..+.... ...|+++|+||+|...
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~ 124 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPE 124 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 999999866555542 3444443322 2367899999999553
No 72
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.62 E-value=5.4e-15 Score=122.11 Aligned_cols=115 Identities=25% Similarity=0.304 Sum_probs=93.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------ 88 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------ 88 (240)
..| .+++++|++++|||||+|+|++........ ..|+|...-...... ++.++.++||.|+-......+.
T Consensus 215 r~G--~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 215 REG--LKVVIIGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hcC--ceEEEECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 345 899999999999999999999998755443 368888888888888 9999999999999976655444
Q ss_pred ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|.++||+|++..++..+...+..+ ....|+++|.||.|...+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhcccc
Confidence 899999999999977788877776622 223679999999996654
No 73
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.61 E-value=4.1e-15 Score=111.05 Aligned_cols=114 Identities=22% Similarity=0.189 Sum_probs=74.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|.+|+|||||++++++........+..+. ......... .+ ..+.+|||||...+...... +.+|++++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~--~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 78 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGV--DFEMERFEI-LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIII 78 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee--EEEEEEEEE-CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEE
Confidence 6899999999999999999987653322222221 211122223 33 46889999999877654444 89999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|++++.+... ..++..+...... ..+|+++|.||.|...
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 79 VFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSS 120 (170)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCc
Confidence 999985544443 3444444333222 1357899999999543
No 74
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.61 E-value=1.7e-14 Score=106.74 Aligned_cols=114 Identities=20% Similarity=0.161 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.+|+++|++|+|||||+|++++...........+.+.. .....+. ....+.+|||||...+...... ..+|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 68999999999999999999988754422222222121 1222231 2346789999997665443333 78999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
|+|+++..+... ..++..+..... ...|++++.||.|..
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~ 119 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLE 119 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccc
Confidence 999985444443 344455544432 236789999999955
No 75
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.61 E-value=1.7e-14 Score=106.86 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|++|+|||||++++++............ ......... ++ ..+.+|||||...+...... ...|++++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE---DSYRKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL 77 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh---hhEEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence 799999999999999999998764322221111 111122223 33 36779999999887655444 88999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|++++++.+.... .+...+...... ...|+++|.||+|...
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 9999865554443 333444443322 2367999999999543
No 76
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.61 E-value=7e-15 Score=109.41 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++++++...........+. ......+.+ ++ ..+.+|||||...+...... ..+|++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGI--DFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccc--eEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 379999999999999999999987643332222222 222223333 33 36789999998776554433 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+.... .++..+.... ....|+++|.||+|...
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEE 122 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 999999866555442 3333443322 12367999999999654
No 77
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.61 E-value=2.3e-14 Score=105.34 Aligned_cols=106 Identities=25% Similarity=0.247 Sum_probs=73.2
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------CCceE
Q 036363 24 LVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------DEIHA 93 (240)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~~~~~ 93 (240)
|+|.+|+|||||+|++++.....+. ..+.|.......+.+ ++..+.+|||||+.++...... ..+|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEee-CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 5899999999999999997633222 245555555556666 6678999999999876643211 48999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++|+|+... . .....+..+.. ...|+++|+||+|....
T Consensus 78 vi~v~d~~~~-~-~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 78 IVNVVDATNL-E-RNLYLTLQLLE-----LGLPVVVALNMIDEAEK 116 (158)
T ss_pred EEEEeeCCcc-h-hHHHHHHHHHH-----cCCCEEEEEehhhhccc
Confidence 9999999842 2 22233333332 13679999999996543
No 78
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.5e-13 Score=112.52 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE 90 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~ 90 (240)
..|+|||.++||||||+|+|++..+..+. ...+|.......+.+.+...+.+|||||+......... ..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~--ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIAD--YPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCC--CCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 46899999999999999999986532221 13456666655555534567999999999764433211 67
Q ss_pred ceEEEEEEECCCCCCHHHHHHH-HHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 91 IHAALVVFSVRSRFSQEEEATL-HSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 91 ~~~~l~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++++++|+|+++..+.++...| ..+......-...|+++|+||+|....
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 8999999999854455554433 334332111123689999999996543
No 79
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.61 E-value=6.4e-15 Score=110.31 Aligned_cols=113 Identities=20% Similarity=0.137 Sum_probs=71.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC-CcEEEEEeCCCCCCCCCCCc---------CCCceE
Q 036363 24 LVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD-GQVVNVIDTPGLFDFSAGSE---------FDEIHA 93 (240)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~---------~~~~~~ 93 (240)
++|++|+|||||+|+|++.....+ . ..+.|..+......+ . +..+.+|||||+........ ...+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~-~-~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA-N-YPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc-C-CCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 589999999999999999764211 1 133444444444555 5 78899999999864322111 177999
Q ss_pred EEEEEECCCCC------CHHHHH-HHHHHHHHhCC-----CcCCeEEEEEeCCCCCCC
Q 036363 94 ALVVFSVRSRF------SQEEEA-TLHSLQTLFGK-----NCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 94 ~l~v~~~~~~~------~~~~~~-~l~~l~~~~~~-----~~~~~~i~v~~~~D~~~~ 139 (240)
+++|+|+.+.. +..+.. ....+...... ....|+++|+||+|....
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 99999998552 233322 22333222111 124689999999996544
No 80
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=1.4e-14 Score=111.90 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++... ....... +.........+ ++ ..+.+|||||...+...... ..+|+++
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~--~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV-EDLAPTI--GVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCc--eeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 8999999999999999999998754 2211111 12222223333 33 46789999999877655444 8899999
Q ss_pred EEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|.+++.+..... .+......+......++++|.||+|...
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999998665555542 3333333333223357899999999543
No 81
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.61 E-value=4.5e-16 Score=118.12 Aligned_cols=114 Identities=23% Similarity=0.350 Sum_probs=85.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc----------------CCCCCcceeEEEEEEE--EeCCcEEEEEeCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMHRTV--LKDGQVVNVIDTPGL 79 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~ 79 (240)
+.++|+++|+.++|||||+++|++....... ....+.|......... . .+..++++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 3589999999999999999999865421110 0113455555556665 5 7889999999998
Q ss_pred CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.++...... ..+|++++|+|+..+........+..+... ..|+++++||+|.+
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-----GIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred cceeecccceecccccceeeeeccccccccccccccccccc-----ccceEEeeeeccch
Confidence 776443333 889999999999988888888888887542 24599999999977
No 82
>PRK11058 GTPase HflX; Provisional
Probab=99.61 E-value=1e-14 Score=123.00 Aligned_cols=116 Identities=22% Similarity=0.158 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--c--------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--E--------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~--------~~ 89 (240)
..|+++|.+|||||||+|+|++.....+. ..+.|.......+.+.+...+.+|||||+....+.. . ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 58999999999999999999997654222 234455555555666333478899999995532211 0 17
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+|++++|+|++++.+......+..+...++.. ..|+++|+||+|...
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~-~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAH-EIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC-CCCEEEEEEcccCCC
Confidence 899999999999766656554444444444322 367999999999654
No 83
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.61 E-value=6.7e-15 Score=109.22 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++......... ..+.......... ++ ..+.+|||||...+...... ..+++++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKS--TIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 6899999999999999999998764322222 2222222233333 33 35789999998765443333 7889999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|+++..+..+. .++..+..... ...|+++|+||+|...
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRH 122 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 99999865555543 34444444322 1368999999999543
No 84
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=1e-14 Score=109.55 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++.+++........++.+... ...... ++ ..+.+|||||...+...... +++|+++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~---~~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i 77 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY---TASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL 77 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE---EEEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence 5899999999999999999998764332222111111 112233 33 35789999998877654444 8999999
Q ss_pred EEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 96 VVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 96 ~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+|+|++++.+... ..++..+....+ ..|+++|.||.|.
T Consensus 78 lvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL 117 (178)
T cd04131 78 ICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDL 117 (178)
T ss_pred EEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhh
Confidence 9999998887776 245556655432 3679999999994
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.60 E-value=2.4e-14 Score=105.59 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++........ ...+.........+ .+ ..+.+|||||...+...... ..+|+++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 77 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHE--STTQASFFQKTVNI-GGKRIDLAIWDTAGQERYHALGPIYYRDADGAI 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--CccceeEEEEEEEE-CCEEEEEEEEECCchHHHHHhhHHHhccCCEEE
Confidence 379999999999999999999876532221 11112222222222 23 35789999997665544433 7899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|.+++.+.... .++..+...... ..|+++|+||+|...
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 78 LVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 99999865554443 333444444332 468999999999653
No 86
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=1.1e-14 Score=124.41 Aligned_cols=111 Identities=25% Similarity=0.267 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|.+|+|||||+|.|++........ ..+.|....+....+ .+..+.+|||||+.+...... ..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEW-LGREFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEE-CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999876432222 355666666667777 788999999999987322100 07
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+|++++|+|+.++.+..+.....++... ..|+++|+||+|..
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 89999999999988888877777766543 36799999999954
No 87
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.60 E-value=1.8e-14 Score=106.68 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++......... ..+.........+ ++ ..+.+|||||...+...... ..+|+++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 77 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKS--TIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 3799999999999999999998764322222 1122222223333 33 36789999997665543333 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+++++..+.+.. .++..+..... ...|+++|+||+|...
T Consensus 78 lv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 78 LVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 99999865555543 33334433321 2478999999999544
No 88
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=1.2e-14 Score=107.59 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|.+|+|||||++.+++........+.. .......... ++ ..+.+|||||...+...... ..+|+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI---EDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch---hheEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence 689999999999999999998775533322111 1112222333 33 35678999998887665554 8899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++.+++-+..+ ..++..+..... ....|+++|+||+|...
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 78 VVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 9999986655554 344444544322 12467999999999543
No 89
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.60 E-value=3.9e-14 Score=105.66 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF 98 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~ 98 (240)
+|+++|..|+|||||++++++... .. ...|.......... .+..+.+|||||...+...... ..+|++++|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 74 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVV 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEEEE-CCEEEEEEECCCChhcchHHHHHhccCCEEEEEE
Confidence 589999999999999999998743 21 12233333334444 6778999999999876554433 8899999999
Q ss_pred ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
|.+++.+..+ ...+..+..... ....|+++|+||.|..
T Consensus 75 D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 113 (169)
T cd04158 75 DSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVA 113 (169)
T ss_pred eCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence 9986544433 233333332111 1226799999999954
No 90
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.60 E-value=5.6e-15 Score=109.19 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
+|+++|++|+|||||++.+++...+... ....+ ........ .+..+.+|||||...+...+.. ..+|++++|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g----~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG----FNVESFEK-GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc----cceEEEEE-CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 4899999999999999999986532221 11122 12222334 6778899999998876554433 889999999
Q ss_pred EECCCCCCHHH-HHHHHHHHHHhC-CCcCCeEEEEEeCCCCCC
Q 036363 98 FSVRSRFSQEE-EATLHSLQTLFG-KNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 98 ~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~i~v~~~~D~~~ 138 (240)
+|++++.+... ...+..+..... .....|+++|+||+|...
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 99986554432 233444433211 112467999999999644
No 91
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.60 E-value=8.6e-15 Score=108.53 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|.+|+|||||+++++............+.+. ...... ++ ..+.+|||||...+...... .+.|+++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY---RKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV 77 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE---EEEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEE
Confidence 6899999999999999999986543222111111111 122233 33 35679999999877665554 8899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++.++..+..+ ..++..+..... ....|+++|+||+|...
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 78 LVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 9999986555554 344455544322 22367999999999543
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.60 E-value=1.2e-14 Score=108.52 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++...........+ .........+ .+ ..+.+|||||...+...... ..+|+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 77 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--ADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV 77 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccc--eEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE
Confidence 3799999999999999999998764322222111 1222222333 33 34679999998766554433 7899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCC--CcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGK--NCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~i~v~~~~D~~~ 138 (240)
+++|+.++.+.... .+...+...+.. ....|+++|+||+|...
T Consensus 78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 78 LVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99999865554443 222333333321 12367999999999663
No 93
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=9.4e-15 Score=110.10 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|.+|+|||||++++++........++.+.... ..... ++ ..+.+|||+|...+...... +++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~---~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~ 79 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT---ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 79 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE---EEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCE
Confidence 3479999999999999999999987643322222221111 12223 33 36789999999877655444 88999
Q ss_pred EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+++|+|++++.+.... .++..+....+ ..|+++|.||.|.
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL 121 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDL 121 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhh
Confidence 9999999988777763 45556655432 3679999999994
No 94
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.60 E-value=8.3e-15 Score=110.29 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-----------CCcEEEEEeCCCCCCCCCCCcC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~l~DtpG~~~~~~~~~~ 88 (240)
.+|+++|++|+|||||++++++...........+... ......+. ....+.+|||||...+......
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDF--REKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEE--EEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 7999999999999999999998754322222222111 11112210 1246789999998765443333
Q ss_pred --CCceEEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 --DEIHAALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 --~~~~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+|++++|+|+++..+..+. .++..+.... ....+|+++|.||+|...
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLED 134 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchh
Confidence 889999999999865555543 3333443321 122467999999999654
No 95
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.60 E-value=7.9e-15 Score=109.80 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=74.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+++|++|+|||||++++++... .... .|.........+ ++..+.+|||||...+...... ..+|++++
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~----~t~g~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDI-DTIS----PTLGFQIKTLEY-EGYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-CCcC----CccccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 37999999999999999999998743 2111 122222333444 6678899999998765443332 78999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|++++.+..+ ...+..+.... .....|+++|+||+|...
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPG 129 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECccccc
Confidence 999986544443 23333332211 112368999999999644
No 96
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.60 E-value=1.1e-14 Score=106.74 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.+|+++|++|+|||||++.+++...........+.+... ...... ....+.+||+||...+...... ..+|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKS--KTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEE--EEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 379999999999999999999877644322222222211 122220 2356789999998665443333 78999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
|++++++-+... ..++..+..... ...|+++++||+|..
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 999985333333 233333433221 236799999999965
No 97
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.60 E-value=1.5e-15 Score=106.60 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc--ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|+.|+|||||+++|++..... ......+.+.......... ....+.+||++|...+...... ..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccchhhcCcEEEE
Confidence 68999999999999999999877541 1111222233322222211 2235789999999766554443 88999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRD 135 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D 135 (240)
|+|.++..+... ...+.++...-+.....|+++|.||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999986555554 233344444432223378999999988
No 98
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.60 E-value=9.4e-15 Score=124.48 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|.+|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.++..... ..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 799999999999999999999976422222 245555555555566 788899999999976433211 17
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+|++++|+|++++.+..+...+.. ....|+++|+||+|...
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTG 335 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccc
Confidence 8999999999997777665544433 11267999999999654
No 99
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.60 E-value=8.5e-15 Score=111.97 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.|+++|..|+|||||+++++...+......+ .+.......+.+ ++ ..+.+|||+|...+...... +++|++++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~T--i~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl 78 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSG--VGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 78 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCc--ceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence 5899999999999999999876543222221 122222223344 44 46789999999887665544 89999999
Q ss_pred EEECCCCCCHHHHHHH-HHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 97 VFSVRSRFSQEEEATL-HSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 97 v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
|+|++++.+..+...| ..+..... ...|+++|.||+|..
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~ 118 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCE 118 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccc
Confidence 9999987777765433 33333222 236799999999953
No 100
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=1.2e-14 Score=108.65 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|..|+|||||++.+.+...........+... .....+ ++ ..+.+|||||...+...... ..+|+++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i 78 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY---KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI 78 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE---EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence 6899999999999999999987664322222111111 112333 44 35789999999887665544 8899999
Q ss_pred EEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|++++++.+...... +..+.... .....|+++|.||+|..
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhh
Confidence 9999998888776543 33343322 22236899999999954
No 101
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.60 E-value=2e-14 Score=109.87 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCc----------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSE---------- 87 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~---------- 87 (240)
.+|+++|.+|+|||||++.+++........+ ..+.........+ ++ ..+.+|||||...+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~p--t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIP--TEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCC--ccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence 3799999999999999999998764332221 1111111122333 44 3577999999875432111
Q ss_pred CCCceEEEEEEECCCCCCHHHH-HHHHHHHHHhC-CCcCCeEEEEEeCCCCCC
Q 036363 88 FDEIHAALVVFSVRSRFSQEEE-ATLHSLQTLFG-KNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 88 ~~~~~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~-~~~~~~~i~v~~~~D~~~ 138 (240)
...+|++++|+|++++.+.+.. .+++.+..... .....|+++|.||+|...
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 1789999999999976666543 34444544431 123468999999999543
No 102
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.6e-14 Score=108.76 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|+.|+|||||++.+++........ ............... ++ ..+.||||||...+...... ..+|+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEE
Confidence 379999999999999999998876432211 111111111111222 33 46789999998766544333 7899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|+++..+..+ ..++..+...... ..|+++|+||.|...
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~ 120 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSG 120 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchh
Confidence 9999986655544 3444455443322 367999999999543
No 103
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.60 E-value=3.3e-14 Score=108.55 Aligned_cols=146 Identities=13% Similarity=0.100 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe------CCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK------DGQVVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
+|+++|.+|+|||||++.+++.........+.+.+..... ..+. ....+.+|||+|...+...... +++|
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~--~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad 79 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKH--HTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVN 79 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEE--EEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCC
Confidence 7999999999999999999987654333322232222222 2221 1236789999999887654433 8999
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHHhC-----------------CCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCc
Q 036363 93 AALVVFSVRSRFSQEEE-ATLHSLQTLFG-----------------KNCFDYMIVVFSGRDELEANDETLEDYLGRECPK 154 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~-----------------~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~ 154 (240)
++++|+|++++.+.+.. .++..+...-+ .....|+++|.||.|........-+..+..
T Consensus 80 ~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~---- 155 (202)
T cd04102 80 GIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTA---- 155 (202)
T ss_pred EEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhH----
Confidence 99999999988777764 44455543211 112368999999999654321111111111
Q ss_pred hHHHHHHHhCCcEEEEeCC
Q 036363 155 PLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (240)
...+-+.++......+..
T Consensus 156 -~~~ia~~~~~~~i~~~c~ 173 (202)
T cd04102 156 -RGFVAEQGNAEEINLNCT 173 (202)
T ss_pred -hhhHHHhcCCceEEEecC
Confidence 234445566666555543
No 104
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=1.9e-14 Score=123.76 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---------- 87 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------- 87 (240)
...+|+++|.+|+|||||+|+|++....... ...++|.........+ ++..+.+|||||+........
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCccccccccchHHHHHHHHH
Confidence 3489999999999999999999997643222 2345555544444555 777889999999854322110
Q ss_pred ---CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 88 ---FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 88 ---~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...+|++++|+|++++.+..+...+..+.. ...|+++|+||+|...
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-----AGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCC
Confidence 068999999999998899888877766643 1367999999999654
No 105
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=1.5e-14 Score=109.89 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++........++.+... ...... ++ ..+.+|||||...+...... ..+|+++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~---~~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~i 76 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY---VHDIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIM 76 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee---EEEEEE-CCEEEEEEEEECCCChhccccccccccCCCEEE
Confidence 3799999999999999999998765332222111111 111222 33 46789999999887655444 8899999
Q ss_pred EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++++++-+.... .++..+..... ..|+++|.||+|...
T Consensus 77 lv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~ 118 (189)
T cd04134 77 LCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLRE 118 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 99999976666543 35555554322 367999999999544
No 106
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.59 E-value=1e-14 Score=110.50 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|..|+|||||++++.+........ ...+.......... ++ ..+.+|||||...+...... .++|++
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~--~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYG--YNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 3799999999999999999999754322111 11122222222333 44 46789999999887765444 899999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++|+|++++.+.... .++..+..... ..|+++|.||.|..
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~ 123 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLA 123 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccch
Confidence 999999987777764 45555544332 36899999999953
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=1.7e-14 Score=107.22 Aligned_cols=113 Identities=19% Similarity=0.102 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF 98 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~ 98 (240)
+|+++|.+|+|||||++++++...... ........... ..... ....+.+|||||...+...... ..+|++++|+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~~~-~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIP-ADVTP-ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceEee-eeecC-CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 799999999999999999998764322 11111111110 11111 3457889999998765433222 7899999999
Q ss_pred ECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 99 SVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 99 ~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++++.+.... .++..+.... . ..|+++|+||+|....
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDG 118 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcccc
Confidence 99866666553 3444454432 2 3689999999996543
No 108
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.58 E-value=3.7e-14 Score=123.82 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=84.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+++|+.++|||||+++|.+....... ..+.|.....+...+.++..+.+|||||+.+|...... ..+|++++
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 379999999999999999999987643322 24556666666666623348999999999988765544 88899999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|++++++...+....+..+.. ...|+++++||+|...
T Consensus 165 VVda~dgv~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 165 VVAADDGVMPQTIEAISHAKA-----ANVPIIVAINKIDKPE 201 (587)
T ss_pred EEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECccccc
Confidence 999987777776666655432 1256999999999643
No 109
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.58 E-value=4.8e-14 Score=105.15 Aligned_cols=116 Identities=18% Similarity=0.110 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++++++...........+ .........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--eEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 38999999999999999999997654332222111 1211222333 33 35679999998776554443 788999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGK--NCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~i~v~~~~D~~ 137 (240)
++|++++++-+.... .+...+...... ....|+++|+||.|..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999999866555543 333444433321 1235799999999954
No 110
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.58 E-value=3.4e-14 Score=106.45 Aligned_cols=111 Identities=18% Similarity=0.097 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|..|+|||||+.+++.........++.+.... ..... ++ ..+.+|||+|...+...... +++|+++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~---~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i 77 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS---ANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 77 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE---EEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEE
Confidence 57999999999999999999977643332222222221 12223 33 46789999999988776655 8999999
Q ss_pred EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|+|.+++.+.+.. .++..+....+ ..|+++|.||+|..
T Consensus 78 lvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~ 118 (176)
T cd04133 78 LAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhc
Confidence 99999988888764 45666654322 36899999999953
No 111
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.4e-14 Score=110.01 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|+.|+|||||++.+++.........+.+. ......... ++ ..+.+|||||...+...... ..+|+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii 77 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGV--DFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL 77 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee--EEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence 37999999999999999999987653222222222 222223333 33 35679999998766544333 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+.... .++..+....+. ..|+++|+||.|...
T Consensus 78 lv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 78 LVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVN 119 (188)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcc
Confidence 99999866555543 333444433222 267999999999553
No 112
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=1.1e-14 Score=110.44 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEE-EEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMH-RTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
.+|+++|++|+|||||++++++......... |....+. ..... ....+.+|||||...+...... ..+|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~----t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 76 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVP----TVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVL 76 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCC----eeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEE
Confidence 3799999999999999999998765332221 2211211 12221 1235789999998766544433 789999
Q ss_pred EEEEECCCCCCHHHHH--HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEEA--TLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|.+++.+..+.. ++..+... . ...|+++|+||.|...
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~ 119 (187)
T cd04132 77 LICYAVDNPTSLDNVEDKWFPEVNHF-C--PGTPIMLVGLKTDLRK 119 (187)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhhh
Confidence 9999999766665532 33334322 2 2367999999999543
No 113
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.58 E-value=2.2e-14 Score=107.56 Aligned_cols=111 Identities=20% Similarity=0.133 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEE-EEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMH-RTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
.+|+++|.+|+|||||++.+.+..+.....+ |....+. .... ++ ..+.+|||||...+...... ..+|++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~p----t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ 76 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP----TVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 76 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----ceeeeeEEEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEE
Confidence 5899999999999999999998664322222 2211111 2233 44 46789999999887665543 789999
Q ss_pred EEEEECCCCCCHHHHH--HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEEA--TLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|.+++.+..... ++..+.... ...|+++|.||.|...
T Consensus 77 ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~ 119 (175)
T cd01874 77 LVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRD 119 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhh
Confidence 9999999776666542 444444332 2368999999999543
No 114
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.58 E-value=2e-14 Score=106.32 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|++|+|||||++.+++........+..+ .......... ++ ..+.+|||||...+...... ..+|++++
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG--VDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence 799999999999999999998765333222222 1122223333 33 35689999998776554333 88999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|++++-+.+.. .++..+.... ....|+++|.||.|...
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQ 119 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc
Confidence 9999976665553 3344443332 12368999999999543
No 115
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.58 E-value=2.6e-14 Score=127.74 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+++|+.++|||||+++|.+.....+ . ..+.|.....+.+.+ ++..+++|||||+.+|...... ..+|++++
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~-e-~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAG-E-AGGITQHIGAYQVET-NGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccc-c-cCceeeeccEEEEEE-CCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 37999999999999999999987654322 2 245666666667777 7788999999999988766554 78899999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|++++++...+....+..+.. ...|+++++||+|...
T Consensus 367 VVdAddGv~~qT~e~i~~a~~-----~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 367 VVAADDGVMPQTIEAINHAKA-----AGVPIIVAINKIDKPG 403 (787)
T ss_pred EEECCCCCCHhHHHHHHHHHh-----cCCcEEEEEECccccc
Confidence 999997777777776665532 1256999999999643
No 116
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=2.8e-14 Score=100.94 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|++||.+|+|||||+.++....+-+......|.......-.+.- +...+.+|||.|...|.+.... +++.++|+|
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 8999999999999999999987665333333344444444333322 3457889999999999887776 999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+|++.+-+......|..-.+.+..+...-.++|.||.|.
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc
Confidence 999987777766555444444443333335788999993
No 117
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.58 E-value=7.6e-14 Score=105.27 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|.+|+|||||++++++........++.+... ....... ++ ..+.+|||+|...+...... ..+|+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~--~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii 77 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNF--MEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAIL 77 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE--EEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE
Confidence 3799999999999999999988764332222222221 1122333 33 46789999999877654444 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|+|++++.+..+. .++..+.... . ...| ++|+||+|..
T Consensus 78 lv~D~t~~~s~~~i~~~~~~~~~~~-~-~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 78 FMFDLTRKSTLNSIKEWYRQARGFN-K-TAIP-ILVGTKYDLF 117 (182)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-C-CCCE-EEEEEchhcc
Confidence 99999977666653 4444454432 2 2244 6889999964
No 118
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.58 E-value=4e-14 Score=105.50 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|++|+|||||++.+...... ...+ |.......... ....+.+|||||...+...... ..+|++++|
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~----t~g~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV-TTIP----TVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc-cccC----CcccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 79999999999999999999865432 2111 22222223334 6678999999999766443333 889999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDEL 137 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~ 137 (240)
+|+++..+..+. ...+.+.+... ...|+++|+||+|..
T Consensus 84 ~D~t~~~s~~~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 84 VDSADRDRIDEA--RQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred EeCCchhhHHHH--HHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 999865544432 22233322211 136799999999954
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=2.4e-14 Score=106.77 Aligned_cols=114 Identities=17% Similarity=0.095 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.+|+++|++|+|||||++++++........... ........... ....+.+|||||+..+...... ..+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV---FDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence 379999999999999999999876532222111 11111122221 2346889999999876544333 78999999
Q ss_pred EEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 97 VFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 97 v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+|++++.+... ..++..+..... ..|+++|+||+|...+
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD 119 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence 999986554443 233444443322 4789999999996654
No 120
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=2e-14 Score=111.77 Aligned_cols=116 Identities=21% Similarity=0.136 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcCC-CceEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEFD-EIHAALVV 97 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~-~~~~~l~v 97 (240)
+|+++|++|+|||||++.+++.... .......+.... ...+.+. ....+.+|||||........... .+|++++|
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV 79 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTY--ERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVV 79 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccce--EEEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEE
Confidence 7999999999999999999765543 221111111111 1222221 23468899999998221111115 89999999
Q ss_pred EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++++++.+... ..++..+.... .....|+++|.||+|....
T Consensus 80 ~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 80 YSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS 121 (221)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc
Confidence 99997655553 34444444332 1234689999999995443
No 121
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.58 E-value=4.4e-14 Score=105.19 Aligned_cols=114 Identities=23% Similarity=0.213 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++...........+.. ......+ ++ ..+.+|||||...+...... ..+++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v 77 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS---YRKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe---EEEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE
Confidence 689999999999999999999776433222211111 1122233 33 46789999999888766555 8889999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++.+++-+.+.. .+...+...... ...|+++++||.|...
T Consensus 78 lv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~ 120 (168)
T cd04177 78 LVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLED 120 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccc
Confidence 99999865555443 333444443332 2367899999999544
No 122
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.57 E-value=5.7e-15 Score=111.07 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcc------ccC-C------CCCcceeEEEEEEEE----eCCcEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFK------SRA-S------SSGVTSTCEMHRTVL----KDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~------~~~-~------~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~~~~ 82 (240)
++|+++|++|+|||||++++++..... ... . ..+.+.........+ ..+..+.+|||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 479999999999999999998743110 000 0 112233222222222 13456789999999887
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
...... ..+|++++|+|++++.+..+...+..+.. . ..|+++|+||+|..
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~ 132 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---N--NLEIIPVINKIDLP 132 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence 554433 88999999999987777666555544432 1 25699999999954
No 123
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.57 E-value=9.1e-14 Score=103.66 Aligned_cols=113 Identities=14% Similarity=0.007 Sum_probs=73.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
..+|+++|.+|+|||||++++++.... ....++.+.. .......+ ++ ..+.+||++|...+...... ..+|+
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~--~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPR--YAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcc--eEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 489999999999999999999987643 2222212211 22222333 34 35779999998877554443 89999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+++|+|++++.+.... ..+...+......|+++|+||+|..
T Consensus 81 ~llv~d~~~~~s~~~~---~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 81 ACLVYDSSDPKSFSYC---AEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred EEEEEeCCCHHHHHHH---HHHHHHhccCCCCeEEEEEEccccc
Confidence 9999999855333322 2222222222247899999999954
No 124
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.57 E-value=2.2e-13 Score=100.94 Aligned_cols=109 Identities=18% Similarity=0.277 Sum_probs=70.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------------
Q 036363 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------------- 88 (240)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------- 88 (240)
|+++|++|+|||||+|.|++...........+.|..... .. ....+.++||||+.........
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 799999999999999999953332222222333433322 22 2338889999998765331100
Q ss_pred --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
...++++++++.....+......+.++... ..|+++|+||+|.+.+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKK 125 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCCh
Confidence 456788899998866556655655555432 2578999999997644
No 125
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.57 E-value=3.4e-14 Score=108.24 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
.+|+++|++|+|||||++++++...... .....+.+ ........ ++. .+.+|||||...+...... ..+|++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i 77 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAA--FVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAA 77 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeE--EEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence 3799999999999999999998664321 11111111 11122333 443 4569999998776555443 789999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+++++..+... ..++..+... ....|+++|+||+|...
T Consensus 78 ilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 78 IVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 99999986544443 2344444332 12367999999999543
No 126
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.57 E-value=5.6e-14 Score=119.54 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=83.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c---------------CCCCCcceeEEEEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (240)
+..+|+++|+.++|||||+++|++...... + ....|.|.........+ ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 448999999999999999999985432110 0 11357777777777777 78
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCC--CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRS--RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+.+|||||+.++...... ..+|++++|+|+++ .........+..+. .++ .+++++++||+|...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~---~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG---INQLIVAINKMDAVN 153 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC---CCeEEEEEEcccccc
Confidence 89999999998776543222 78999999999986 55555555554443 223 256899999999654
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.57 E-value=8.6e-14 Score=102.48 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=74.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF 98 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~ 98 (240)
+|+++|+.|+|||||++++++... ..... |.........+ .+..+.+|||||...+...... ..+|++++|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~----t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 74 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIP----TIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV 74 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCC----CcCcceEEEEE-CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998862 22222 22222333444 6678999999998876444333 7889999999
Q ss_pred ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|++++.+... ...+..+..... ....|+++++||+|....
T Consensus 75 D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 75 DSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA 115 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence 9985433332 233333333211 123679999999996543
No 128
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=2.6e-14 Score=110.38 Aligned_cols=116 Identities=18% Similarity=0.125 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++.+++......... ............+.++ ..+.+|||||...+...... ..+|+++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~--ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDP--TVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--eeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 7899999999999999999998764332221 1111221122222122 36789999998776544333 7899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+..+. .++..+...... ..+++++|.||.|...
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 99999876555543 444444444332 2356889999999544
No 129
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=6.1e-15 Score=113.83 Aligned_cols=118 Identities=23% Similarity=0.218 Sum_probs=83.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------- 88 (240)
.++.+|.++|.+|+|||||+|+|++......... ..++....+....+ ++..+++|||||+.+.......
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v-g~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV-GVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeec-ccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 3448899999999999999999996543222211 11121122222233 6688999999999997655522
Q ss_pred -CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 -DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 -~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+..|.+++++++.++.-..+..+++.+.-.... .++++++|.+|...+
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p 163 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP 163 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence 889999999999877777777777777654433 679999999998765
No 130
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.57 E-value=2.3e-14 Score=107.26 Aligned_cols=109 Identities=22% Similarity=0.170 Sum_probs=74.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEE-EEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-HRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
|+++|+.|+|||||++++++......... +....+ ..... ++. .+.+|||||...+...... ..+|++++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 75 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP----TVFENYSADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLI 75 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCC----cEEeeeeEEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEE
Confidence 58999999999999999998764332221 111111 12223 333 5789999999877655444 88999999
Q ss_pred EEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|+++..+.... .++..+....+ ..|+++|.||+|...
T Consensus 76 v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 116 (174)
T smart00174 76 CFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRE 116 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhh
Confidence 9999866555543 34555544332 368999999999543
No 131
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.57 E-value=1.7e-13 Score=117.80 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEE
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRT 63 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~ 63 (240)
|++.+++++++.+.+| .+|+|||+||+|||||++.|+|...+.++......+....+..+
T Consensus 14 g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q 73 (530)
T COG0488 14 GDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQ 73 (530)
T ss_pred CCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCC
Confidence 6788999999999999 99999999999999999999999877777654444444444443
No 132
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.57 E-value=1.2e-14 Score=110.62 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=73.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC---ccc--cCCCCCcceeEEEEEEEEe-------------CCcEEEEEeCCCCCCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRA---FKS--RASSSGVTSTCEMHRTVLK-------------DGQVVNVIDTPGLFDF 82 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~---~~~--~~~~~~~t~~~~~~~~~~~-------------~~~~~~l~DtpG~~~~ 82 (240)
+|+++|+.|+|||||++++++... +.. .....+.|.........+. .+..+.+|||||+..+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 81 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASL 81 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHH
Confidence 799999999999999999997311 000 0111234544444444441 1568899999998643
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
...... ..+|++++|+|+..+.+..+...+... ... ..|+++++||+|....
T Consensus 82 ~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 82 IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EIL----CKKLIVVLNKIDLIPE 135 (192)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHc----CCCEEEEEECcccCCH
Confidence 221111 678999999999866666554444432 222 2478999999996643
No 133
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=4.8e-14 Score=117.62 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI 91 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~ 91 (240)
-|+|||.++||||||+|+|++.....+. ...+|.......+.+.+...+.++||||+......... ..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~--~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVAD--YPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccC--CCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 7999999999999999999987642221 23456566656555523457999999999865433211 778
Q ss_pred eEEEEEEECC---CCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 92 HAALVVFSVR---SRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 92 ~~~l~v~~~~---~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++++|+|++ ..-...+ ..++..+......-...|.++|+||+|...
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 9999999987 1222222 344444443211112367899999999654
No 134
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.57 E-value=3.7e-14 Score=105.59 Aligned_cols=111 Identities=21% Similarity=0.172 Sum_probs=73.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF 98 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~ 98 (240)
+|+++|++|+|||||++.+++.. .....++.+ ........ .+..+.+|||||...+...... ..+|++++|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~-~~~~~~t~g----~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~ 74 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI-PKKVAPTVG----FTPTKLRL-DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVV 74 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-CccccCccc----ceEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEE
Confidence 48999999999999999999862 211112222 22233444 6778999999998765544333 8899999999
Q ss_pred ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+++..+..+ ...+..+..... ....|+++|+||.|...
T Consensus 75 D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 75 DSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKN 114 (167)
T ss_pred ECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcC
Confidence 9986554443 334444432211 12468999999999543
No 135
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.57 E-value=2.5e-14 Score=108.83 Aligned_cols=110 Identities=18% Similarity=0.123 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|..|+|||||++.++...+.....++.+.... ..... ++ ..+.+|||||...+...... +++|+++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~---~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS---AQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE---EEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 79999999999999999999876543332222221111 11223 33 46789999999988765544 8899999
Q ss_pred EEEECCCCCCHHHHH--HHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 96 VVFSVRSRFSQEEEA--TLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 96 ~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+|+|++++.+.+... ++..+.... . ..|+++|.||.|.
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL 119 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDL 119 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhh
Confidence 999999777766643 334444332 2 3689999999994
No 136
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.56 E-value=4.7e-14 Score=109.17 Aligned_cols=111 Identities=22% Similarity=0.142 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|.+|+|||||++.+++..... ... |....+....+ ....+.+|||||...+...... ..+|++++|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~----Tig~~~~~~~~-~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV 74 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVS----TVGGAFYLKQW-GPYNISIWDTAGREQFHGLGSMYCRGAAAVILT 74 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCC----ccceEEEEEEe-eEEEEEEEeCCCcccchhhHHHHhccCCEEEEE
Confidence 379999999999999999999876432 111 22222233333 4567899999999877655443 899999999
Q ss_pred EECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 98 FSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 98 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++++.+..+. .++..+..... ...|+++|.||+|...
T Consensus 75 ~Dvt~~~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~ 114 (220)
T cd04126 75 YDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE 114 (220)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 999977776664 34555544322 2367999999999643
No 137
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.56 E-value=2.8e-14 Score=111.11 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|..|+|||||++.+++..+.....++.+.... ..... ++ ..+.+|||+|...+...... .++|+++
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~---~~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT---AGLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE---EEEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 79999999999999999999987643332222221111 12223 33 46789999998877654443 8999999
Q ss_pred EEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 96 VVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 96 ~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+|+|++++.+... ..++..+....+ ..|+++|.||+|.
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL 129 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDL 129 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccc
Confidence 9999997777765 345555655432 2579999999994
No 138
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.56 E-value=2.7e-14 Score=106.01 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=70.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCC-CCCCcC--CCceEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDF-SAGSEF--DEIHAAL 95 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~-~~~~~~--~~~~~~l 95 (240)
+|+++|++|+|||||++++++.......... +.........+ ++. .+.+|||||.... ...... ..+|+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPN---LESLYSRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFV 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCC---hHHhceEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEE
Confidence 4899999999999999999875432111111 11111122223 333 5789999998853 222222 7899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|+|++++.+.... .++..+..........|+++|+||+|..
T Consensus 77 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 77 LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 99999976665543 3344444332112236799999999943
No 139
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.56 E-value=4.2e-14 Score=105.97 Aligned_cols=111 Identities=19% Similarity=0.085 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|..|+|||||+.++++........+..+... ...... ++ ..+.+|||||...+...... .++|+++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 77 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee---EEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE
Confidence 6899999999999999999997654322222211111 112223 33 46789999999877655444 8899999
Q ss_pred EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|++.+++-+.... .++..+.... ...|+++|.||.|..
T Consensus 78 lv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~ 118 (174)
T cd01871 78 ICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLR 118 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhc
Confidence 99999976666654 2444454432 236899999999953
No 140
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.56 E-value=1.6e-14 Score=109.72 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=77.5
Q ss_pred cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC
Q 036363 7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS 86 (240)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (240)
++++++.... .+|+++|++|||||||++++++.... ... .|.........+ ++..+.+|||||...+...+
T Consensus 10 ~~~~~~~~~~---~ki~ilG~~~~GKStLi~~l~~~~~~-~~~----~T~~~~~~~i~~-~~~~~~l~D~~G~~~~~~~~ 80 (190)
T cd00879 10 LSSLGLYNKE---AKILFLGLDNAGKTTLLHMLKDDRLA-QHV----PTLHPTSEELTI-GNIKFKTFDLGGHEQARRLW 80 (190)
T ss_pred HHHhhcccCC---CEEEEECCCCCCHHHHHHHHhcCCCc-ccC----CccCcceEEEEE-CCEEEEEEECCCCHHHHHHH
Confidence 3444444333 68999999999999999999986542 111 122222334455 67788999999987654332
Q ss_pred cC--CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 87 EF--DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 87 ~~--~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.. ..+|++++|+|.++..+... ...+..+.... .....|+++++||+|...
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCC
Confidence 22 78899999999985433322 22333332211 122368999999999643
No 141
>PLN03110 Rab GTPase; Provisional
Probab=99.56 E-value=2.4e-14 Score=110.95 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=77.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|+.|+|||||++++++.........+.+. ......+.+ ++ ..+.+|||||...+...... ..++++
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~--~~~~~~v~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGV--EFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeE--EEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 379999999999999999999987653332222222 222223333 33 36789999998776554433 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++|+|.++..+.... .++..+....+ ...|+++|+||+|..
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLN 130 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcc
Confidence 999999866665553 44455544332 236799999999953
No 142
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.8e-14 Score=103.59 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+++++|..++||||||++++-..+......+.|.........+.- ....+.+|||.|+..|...... +...++++|
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d-~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcC-cEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 7999999999999999999997665444444444444333222211 2346789999999999887766 999999999
Q ss_pred EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
+|++++.+.+. .++++.+....|.+. ..+++|.||.|+..+.
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKR 144 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchh
Confidence 99998888876 688888887665432 5688899999977654
No 143
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.56 E-value=2e-14 Score=106.55 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC--CCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~--~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
.+|+++|++|+|||||++++.+. ..........+.. +........ ....+.+|||||...+...... ..+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCD--FVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEE--EEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence 37999999999999999999854 2222211111111 211222221 2357889999997655443333 88999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|.++..+.... .++..+.... ...|+++|+||+|...
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 9999999865544432 3334443321 2368999999999544
No 144
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=2.1e-14 Score=109.12 Aligned_cols=114 Identities=22% Similarity=0.267 Sum_probs=74.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|.+|+|||||++.+++...........+.. ....... ++. .+.+|||||...+...... ..+|++++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~---~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS---YRKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFIL 76 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh---EEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEE
Confidence 48999999999999999998765422211111111 1112223 443 4789999998776654443 88999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGK-NCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~ 138 (240)
|+++++..+... ..++..+...... ....|+++|+||+|...
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 77 VYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 999986666554 3444555444321 13467999999999543
No 145
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=8.4e-14 Score=125.14 Aligned_cols=112 Identities=22% Similarity=0.255 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
.+|+++|.+++|||||+|+|+|....... ...+.|.........+ ++..+.+|||||+......... .
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 78999999999999999999987542222 2356676666666667 7888999999998743221110 7
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+|++++|+|++.+++..+..+...+.. ...|+++|+||+|...
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQA 397 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccc
Confidence 8999999999997788877777666643 2368999999999643
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.56 E-value=1.4e-13 Score=112.53 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE 90 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~ 90 (240)
..|+|||.++||||||+|+|++.....+.. ..+|.........+.+...+.+|||||+......... ..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y--~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADY--PFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCC--CCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 478999999999999999999875322211 2345555555555523378999999999765433221 57
Q ss_pred ceEEEEEEECCCC---CCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 91 IHAALVVFSVRSR---FSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 91 ~~~~l~v~~~~~~---~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++++++|+|+++. .+.++.. +...+......-...|+++|+||+|....
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 8999999999843 2333333 33333332111124679999999996543
No 147
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.56 E-value=3.2e-14 Score=104.40 Aligned_cols=112 Identities=22% Similarity=0.174 Sum_probs=71.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEE
Q 036363 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFS 99 (240)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~ 99 (240)
|+++|++|+|||||+|+|++......... |.......... ++..+.+|||||...+...... ..+|++++|+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP----TVGFNMRKVTK-GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC----CCCcceEEEEE-CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 79999999999999999999865332222 22222223334 5677899999998765543333 78899999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 100 VRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 100 ~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++..+... ...+..+..... ....|+++|+||.|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC
Confidence 984333221 223333322111 123579999999996543
No 148
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.55 E-value=2.7e-14 Score=110.45 Aligned_cols=113 Identities=23% Similarity=0.354 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeEEEEEEEEe-C--------CcEEEEEeC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMHRTVLK-D--------GQVVNVIDT 76 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~-~--------~~~~~l~Dt 76 (240)
++|+++|+.++|||||+.+|+......... ...+.|.........+. . +..+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 479999999999999999997543211100 01233333333333331 1 567899999
Q ss_pred CCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 77 PGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 77 pG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
||+.++...... ..+|++++|+|+..+.+......++.+.. . ..|+++++||+|..
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~--~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK---E--RVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEECCCcc
Confidence 999987664444 99999999999998888887777776653 1 14689999999965
No 149
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.55 E-value=1.4e-13 Score=103.21 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|+.|+|||||++.+...... ... .|.......... ....+.+|||||...+...+.. ..+|++++|
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~----~t~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESV-TTI----PTIGFNVETVTY-KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC-CcC----CccccceEEEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 89999999999999999999644321 211 122222333444 6678899999999877654433 889999999
Q ss_pred EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|++++.+..+ ...+..+.... .....|+++|+||.|..
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLP 127 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCcc
Confidence 99986544433 33333332210 01136799999999953
No 150
>PLN03108 Rab family protein; Provisional
Probab=99.55 E-value=5.3e-14 Score=108.59 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+|+|++|+|||||++.+++...........+.+.. .....+ ++ ..+.+|||||...+...... ..+|+++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~--~~~i~~-~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEE--EEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 79999999999999999999987543332222222221 122233 33 35779999998766544333 7899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|+++..+.... .++..+..... ...|+++|.||+|...
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 125 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 99999865555543 34444443322 2467999999999543
No 151
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.4e-14 Score=101.69 Aligned_cols=118 Identities=21% Similarity=0.191 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+|+|.+|+|||||+-++....+.....++.|.........+.- ....+.+|||.|+..+.+.... ++++++|+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 37999999999999999988887665433333333333222222211 2346779999999998877666 99999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+|+++.-|... +.+++.|.+..+.+ ..+.+|.||+|....
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLER 125 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhc
Confidence 999997666654 67777777654422 235568999996653
No 152
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.55 E-value=1.8e-14 Score=115.32 Aligned_cols=113 Identities=25% Similarity=0.307 Sum_probs=78.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccc--cCCC--------------CCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKS--RASS--------------SGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~--~~~~--------------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
+|+++|++|+|||||+++|++...... +... .+.+.........| ++..+++|||||+.++..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHHHH
Confidence 489999999999999999975432111 1110 12333344455666 788999999999987643
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.... ..+|++++|++++.+........++.+.. ...|.++++||+|....
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE-----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECCccCCC
Confidence 3322 88999999999997777766666665542 12568899999996644
No 153
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.55 E-value=7.5e-14 Score=104.47 Aligned_cols=112 Identities=19% Similarity=0.103 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|+.|+|||||++++++........+ . ........... ++ ..+.+|||||...+...... ..+|+++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~-t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i 76 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVP-T--AFDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFL 76 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-c--eeeeeeEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEE
Confidence 3789999999999999999987654322211 1 11111112223 33 36689999999877665544 8899999
Q ss_pred EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+.... .++..+..... ..|+++|+||+|...
T Consensus 77 ~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 118 (173)
T cd04130 77 LCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRT 118 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhcc
Confidence 99999976666543 34555543221 267999999999543
No 154
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.55 E-value=8e-14 Score=104.31 Aligned_cols=111 Identities=17% Similarity=0.088 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++............ ......... ++. .+.+|||||...+...... ...|+++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 76 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF---DHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 76 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---eeeEEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEE
Confidence 3799999999999999999998764322221111 111112223 333 4679999999887665544 8889999
Q ss_pred EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|++.+++-+.... .++..+... ....|+++|+||+|..
T Consensus 77 lv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~ 117 (174)
T cd04135 77 ICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhh
Confidence 99999866555543 234444432 2236789999999954
No 155
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.55 E-value=5.3e-14 Score=108.94 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|++||.+|+|||||++.+++..++....++.+.... ..... ++ ..+.+|||+|...+...... +.+|+++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~---~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il 77 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT---ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL 77 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE---EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence 58999999999999999999987654333222222221 12223 33 36789999999877654444 8999999
Q ss_pred EEEECCCCCCHHHH-HHHH-HHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLH-SLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~-~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|+|++++.+.... ..|. .+.... ...|+++|.||+|..
T Consensus 78 lvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~ 118 (222)
T cd04173 78 ICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccc
Confidence 99999977666653 3333 333222 236799999999943
No 156
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.54 E-value=3.4e-14 Score=104.90 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=71.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF 98 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~ 98 (240)
+|+++|..|+|||||++.+...... ...++.+ ........ ....+.+|||||...+...+.. .++|++++|+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g----~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG----FNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCC----cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 7999999999999999999655432 2222122 22223334 5678899999999766544333 8899999999
Q ss_pred ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
|++++.+..+ ...+..+.... .....|+++++||.|..
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLP 114 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCC
Confidence 9986544433 22333332110 11136799999999953
No 157
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.54 E-value=1.7e-13 Score=103.63 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=99.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----CCCCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCC
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR-----ASSSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAG 85 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----~~~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~ 85 (240)
...|-..+|++||.+|.|||||+|++.......++ ..+...|........... ++ ..++++|||||.|....
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 34566689999999999999999999765432221 112233333333222221 22 26789999999998766
Q ss_pred CcC------------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363 86 SEF------------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR 134 (240)
Q Consensus 86 ~~~------------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~ 134 (240)
... ..+|+++|+++++ ..+++.+.++++.|.+. .+++.|+.|+
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIaka 194 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKA 194 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeec
Confidence 544 7889999999998 56888889999888764 4689999999
Q ss_pred CCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCCcc
Q 036363 135 DELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKD 176 (240)
Q Consensus 135 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (240)
|.+. +++...- .+.++.-+...+..++++.....+
T Consensus 195 DtlT-----leEr~~F--kqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 195 DTLT-----LEERSAF--KQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred cccc-----HHHHHHH--HHHHHHHHHhcCcccccccccccc
Confidence 9663 2222111 123555566666666666655443
No 158
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.54 E-value=4.4e-14 Score=108.07 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|++|+|||||++++++.......... +.........+ .+ ..+.+|||||...+...... ..+|++++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vil 76 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRT---VEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFAL 76 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc---hhhheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEE
Confidence 5899999999999999999987643221111 11112223333 44 46789999998877654333 78999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|+++..+.... .++..+..... ....|+++|+||+|...
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 77 VYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 9999865555543 33344444332 23367999999999654
No 159
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.54 E-value=7.5e-14 Score=104.38 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=73.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
+..+|+++|++|+|||||++.|.+...... .. |.........+ .+..+.+|||||...+...... ..+|+++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-~~----t~g~~~~~i~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI-TP----TQGFNIKTVQS-DGFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc-CC----CCCcceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 348999999999999999999998753211 11 22222234444 6778899999998665433222 7789999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|+.+..+... ...+..+..... ....|+++++||+|....
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC
Confidence 9999985333322 223333322111 123679999999996543
No 160
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.54 E-value=5.9e-14 Score=105.19 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|++|+|||||++.+++...... ..|....+....+ .+..+.+|||||...+...... .++|++++|
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 7999999999999999999987654321 1222233344455 6778999999998766544333 889999999
Q ss_pred EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++++.+... ...+..+....+ ....|+++++||+|...
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKG 130 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCC
Confidence 99985433322 233333322111 12367999999999543
No 161
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.54 E-value=3.4e-13 Score=98.72 Aligned_cols=110 Identities=26% Similarity=0.240 Sum_probs=75.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCceEE
Q 036363 24 LVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEIHAA 94 (240)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~~~~ 94 (240)
++|+.|+|||||+|+|++........ ..+.+...............+.+|||||+.+....... ..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSP-VPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCC-CCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999876542222 22334333333443322678999999999987765541 889999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++|+++....+........... ....|+++|+||+|....
T Consensus 80 l~v~~~~~~~~~~~~~~~~~~~-----~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLR-----ERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred EEEEeCCCCCCHHHHHHHHHHH-----hcCCeEEEEEEccccCCh
Confidence 9999999666665554222221 123679999999997654
No 162
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.54 E-value=3.5e-14 Score=104.67 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF 98 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~ 98 (240)
+|+++|++|+|||||++++....... ... |.......... .+..+.+|||||...+...+.. ..+|++++|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~ 74 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIP----TIGFNVETVTY-KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV 74 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCC----ccCcCeEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999997655422 111 22222233444 5678899999999876544333 8899999999
Q ss_pred ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|++++.+... ...+..+.... .....|+++|+||+|...
T Consensus 75 d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 75 DSTDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPG 114 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCC
Confidence 9985433222 22222222111 112368999999999643
No 163
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.54 E-value=1.1e-13 Score=103.69 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++...........+... .....+ ++ ..+.+|||||...+...... ..+|+++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY---VADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 77 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce---EEEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence 5899999999999999999998764322221111111 122233 33 35789999999876654433 7889999
Q ss_pred EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++++++-+.... .++..+....+ ..|+++|.||+|...
T Consensus 78 ~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 119 (175)
T cd01870 78 MCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRN 119 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhccc
Confidence 99999865444432 23344433222 367999999999543
No 164
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.54 E-value=4.3e-14 Score=104.03 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=73.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|++|+|||||++++++.... ....+. +.......... + ...+.+||+||...+...... ...|++++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 76 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV-EEYDPT--IEDSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFIL 76 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-cCcCCC--hhHeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence 5899999999999999999987632 222111 11222222333 3 246789999998765443333 78899999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|++.++..+..+ ..++..+...... ...|+++|+||+|...
T Consensus 77 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 77 VYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 999985544443 3444444444331 3478999999999665
No 165
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=2.2e-13 Score=102.67 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=74.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+++|..|+|||||++.+...... ... .|.......... .+..+.+|||||...+...+.. .++|++++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~----pt~g~~~~~~~~-~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTI----PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-ccc----CCcceeEEEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 379999999999999999999865432 211 122223333444 6778999999998766544333 88999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCC
Q 036363 97 VFSVRSRFSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDEL 137 (240)
Q Consensus 97 v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~ 137 (240)
|+|++++.+..+ ....+...+... ...|+++|+||.|..
T Consensus 91 V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 91 VVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 999986544433 122333332211 136799999999953
No 166
>CHL00071 tufA elongation factor Tu
Probab=99.54 E-value=5e-14 Score=118.99 Aligned_cols=117 Identities=16% Similarity=0.242 Sum_probs=83.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
.+..+|+++|+.++|||||+++|++...... .....+.|.......+.+ ++..+.++||||+.++
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHHH
Confidence 3458999999999999999999997532111 011245565555444555 6778899999998755
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...... ..+|++++|+|+..+...++...+..+.. ++ .+++++++||+|...
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~-~g---~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ-VG---VPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCEEEEEEEccCCCC
Confidence 332222 78999999999997888888777776653 22 355889999999764
No 167
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.54 E-value=5.6e-14 Score=104.59 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++.+++......... ..+.........+ .+ ..+.+|||||...+...... ..+|++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA--TIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 38999999999999999999986543222111 1111222223334 44 35678999998766554333 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|+++..+.... .++..+..... ...|+++|.||+|...
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAE 126 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 999999855444432 33333433322 2367899999999543
No 168
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.53 E-value=5e-14 Score=103.93 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF 98 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~ 98 (240)
+|+++|++|+|||||++.+++...... .+ |...............+.+|||||...+...... ..+|++++|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~----t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~ 75 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IP----TVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV 75 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cC----ccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999998765322 11 2212222333323567899999998765443332 7889999999
Q ss_pred ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
|+++..+... ...+..+..... ....|+++|+||+|..
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (160)
T cd04156 76 DSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLP 114 (160)
T ss_pred ECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccc
Confidence 9985543332 223333322111 1236899999999954
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=5.1e-13 Score=113.66 Aligned_cols=115 Identities=17% Similarity=0.084 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE 90 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~ 90 (240)
..|+|||.++||||||+|+|++..+..+. ..++|.......+.+ .+..+.++||||+......... ..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIad--ypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIAD--YPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccc--cCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 57999999999999999999987543222 234555555555666 6778999999999754332211 67
Q ss_pred ceEEEEEEECCCC----CCHHHHHHHH-HHHHHhC---------CCcCCeEEEEEeCCCCC
Q 036363 91 IHAALVVFSVRSR----FSQEEEATLH-SLQTLFG---------KNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 91 ~~~~l~v~~~~~~----~~~~~~~~l~-~l~~~~~---------~~~~~~~i~v~~~~D~~ 137 (240)
++++++|+|++.. -...+...+. .|..... .-...|+++|+||+|..
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 8999999999731 1222322222 3332221 11236799999999954
No 170
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.53 E-value=1.4e-13 Score=123.65 Aligned_cols=113 Identities=21% Similarity=0.242 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc-----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------- 87 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------- 87 (240)
..+|+++|.+|+|||||+|+|++....... ...++|.........+ ++..+.+|||||+........
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 479999999999999999999997642222 1244555444444555 777889999999864322111
Q ss_pred --CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 88 --FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 88 --~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...+|++++|+|++.+.+..+...+..+.. ...|+++|+||+|...
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVD-----AGRALVLVFNKWDLMD 575 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCC
Confidence 167999999999998899988877766643 1267999999999654
No 171
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.53 E-value=8.3e-14 Score=103.00 Aligned_cols=114 Identities=21% Similarity=0.188 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++++++...........+.. ....... + ...+.+|||||...+...... ...++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 76 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS---YRKKVVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh---EEEEEEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE
Confidence 379999999999999999999765432211111111 1111222 3 246789999998876554443 7889999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++..+.-+... ..++..+..... ....|+++|+||+|...
T Consensus 77 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 77 LVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 9999875444333 334444443321 23467999999999654
No 172
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.53 E-value=4.5e-13 Score=120.37 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------- 88 (240)
.+|+++|++|+|||||+|+|+|.....+. ..+.|.........+ ++..+.++||||++++......
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn--~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 68999999999999999999998653322 256777666666666 7788999999999987643220
Q ss_pred ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|+++ .. .....+..+.+. ..|+++++||+|..+.
T Consensus 81 l~~~~aD~vI~VvDat~-le-r~l~l~~ql~e~-----giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 81 ILSGDADLLINVVDASN-LE-RNLYLTLQLLEL-----GIPCIVALNMLDIAEK 127 (772)
T ss_pred HhccCCCEEEEEecCCc-ch-hhHHHHHHHHHc-----CCCEEEEEEchhhhhc
Confidence 47899999999984 22 223334444321 2679999999996543
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.52 E-value=1.7e-13 Score=120.16 Aligned_cols=114 Identities=24% Similarity=0.314 Sum_probs=82.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
+|+++|+.++|||||+++|+|..... ......+.|....+....+ ++..+.+|||||+..+...... .++|++++|
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 68999999999999999999854210 1122346677776666666 6688999999998766433222 789999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|++++...+....+..+. .++ .+++++|+||+|....
T Consensus 81 VDa~~G~~~qT~ehl~il~-~lg---i~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 81 VDADEGVMTQTGEHLAVLD-LLG---IPHTIVVITKADRVNE 118 (581)
T ss_pred EECCCCCcHHHHHHHHHHH-HcC---CCeEEEEEECCCCCCH
Confidence 9999777677666665443 222 3559999999996543
No 174
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.52 E-value=6.5e-14 Score=105.90 Aligned_cols=112 Identities=11% Similarity=0.039 Sum_probs=73.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+++|++|+|||||++.+++.... ...+ |.........+ ++..+.+|||||...+...... ..+|++++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~----t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQP----TQHPTSEELAI-GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCC----ccccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 389999999999999999999986532 1111 22222233444 6778899999998765433333 88999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
|+|+++..+... ...+..+..... ....|+++|+||.|..
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 131 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAP 131 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 999985432222 223333322111 1236799999999954
No 175
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.52 E-value=8.5e-14 Score=105.05 Aligned_cols=110 Identities=11% Similarity=0.098 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|++|+|||||++.+...... ... .|.......... .+..+.+|||||...+...+.. ..+|++++|
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~-~~~----~T~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV-TTI----PTIGFNVETVEY-KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC----CccccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 89999999999999999999754432 211 122223333444 6778999999998766544333 889999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDEL 137 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~ 137 (240)
+|++++.+..+. ...+...+... ..+|+++|+||.|..
T Consensus 92 ~D~t~~~s~~~~--~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 92 VDSNDRERIGDA--REELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred EeCCCHHHHHHH--HHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 999854433331 12222222221 236799999999953
No 176
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.52 E-value=4.9e-13 Score=96.92 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=81.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|.+|+|||||+|.+....+......+.|...... .+.+ ++ ..+.+|||.|...|.+.... +++|+
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltK--ev~V-d~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTK--EVQV-DDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheee--EEEE-cCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 348999999999999999999998765443333333332222 2223 33 36789999999999877666 99999
Q ss_pred EEEEEECCCCCCHHHHHHHHH-HHHHhC--CCcCCeEEEEEeCCCC
Q 036363 94 ALVVFSVRSRFSQEEEATLHS-LQTLFG--KNCFDYMIVVFSGRDE 136 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~~-l~~~~~--~~~~~~~i~v~~~~D~ 136 (240)
+++|+++++.-+.+....|+. +...-. ....-|+|++.||.|.
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV 130 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence 999999997777776555542 222222 2234579999999994
No 177
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.52 E-value=6.9e-14 Score=105.29 Aligned_cols=114 Identities=22% Similarity=0.223 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++.+++........+..+... ...... .+ ..+.+|||||...+...... ...++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 77 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF---SKIIRY-KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI 77 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE---EEEEEE-CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence 6899999999999999999997654322221111111 122222 33 35689999998776544333 7899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++.++..+.+. ..++..+....+. ...|+++++||+|...
T Consensus 78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 78 LVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence 9999986555444 3444555554332 2357999999999543
No 178
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.52 E-value=1.6e-13 Score=108.24 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=75.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|..|+|||||++.+++...........+ ......+.. ++ ..+.+|||+|...+...... ..+|++++
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~---d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE---DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL 77 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh---HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 799999999999999999987654322211111 111122233 33 46789999998877654433 78999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHh-------CCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLF-------GKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~-------~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|++++.+.++. .++..+.... ......|+++|+||+|...
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 9999976665543 4444554321 0112468999999999543
No 179
>PRK12735 elongation factor Tu; Reviewed
Probab=99.51 E-value=1.2e-13 Score=116.13 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
+..+|+++|+.++|||||+++|++..... ......+.|.......+.+ ++..+.++||||+.++.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHADYV 89 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHHHH
Confidence 44899999999999999999998631100 0111346666665555555 66788999999987654
Q ss_pred CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..... ..+|++++|+++..+......+.+..+.. .+ .+++++++||+|...
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~g---i~~iivvvNK~Dl~~ 142 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cC---CCeEEEEEEecCCcc
Confidence 32222 78899999999987677776666655542 22 344567899999654
No 180
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.51 E-value=1.5e-13 Score=123.20 Aligned_cols=118 Identities=23% Similarity=0.276 Sum_probs=88.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-------c---------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKS-------R---------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (240)
....++|+++|+.++|||||+++|++...... + ....+.|.........| ++..+++|||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence 44568999999999999999999974322110 0 01246677777777888 8899999999999
Q ss_pred CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.++...... ..+|++++|+|+..+....+...+..+... ..|+++++||+|....
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 987654333 889999999999987888777777765432 2568899999997654
No 181
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.51 E-value=8e-14 Score=122.00 Aligned_cols=113 Identities=21% Similarity=0.335 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-ccc-c------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRA-FKS-R------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG 85 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~-~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (240)
++|+++|+.++|||||+++|+.... +.. + ....+.|.......+.| ++..+++|||||+.+|...
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFGGE 80 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHHHH
Confidence 6899999999999999999985321 111 1 11246777777777888 8899999999999988654
Q ss_pred CcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 86 SEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 86 ~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
... ..+|++++|+|+..+...+....+..+... ..|+++++||+|...
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-----GLKPIVVINKIDRPS 130 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-----CCCEEEEEECCCCCC
Confidence 443 889999999999877777777777776542 245799999999643
No 182
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=4.7e-13 Score=97.33 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCC---cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~ 89 (240)
-+|+++|+.|+||||+++.++....... .....+ +|+...+.++...++..+++++|||+..|.-.++. +
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ 90 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSR 90 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhC
Confidence 6999999999999999999987764222 222223 66667777777745589999999999999877776 8
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+..++++++|.+...+.++...+..+... ...|+++.+||.|....
T Consensus 91 ga~gaivlVDss~~~~~~a~~ii~f~~~~----~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 91 GAVGAIVLVDSSRPITFHAEEIIDFLTSR----NPIPVVVAINKQDLFDA 136 (187)
T ss_pred CcceEEEEEecCCCcchHHHHHHHHHhhc----cCCCEEEEeeccccCCC
Confidence 99999999999977777777777777543 22679999999995543
No 183
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=3.6e-13 Score=113.13 Aligned_cols=114 Identities=19% Similarity=0.118 Sum_probs=76.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI 91 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~ 91 (240)
.|+|||.++||||||+|+|++..+-.+. ...+|.......+.+.++..+.++||||+......... ..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~--ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIAN--YHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcccc--CCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 8999999999999999999987642222 23456666666566633678999999999764333211 678
Q ss_pred eEEEEEEECCCC---CCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 92 HAALVVFSVRSR---FSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 92 ~~~l~v~~~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+++++|+|+++. -+..+ ..+...+..........|+++|+||+|.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 999999999732 23333 2333444433221234689999999994
No 184
>PRK12736 elongation factor Tu; Reviewed
Probab=99.51 E-value=2.1e-13 Score=114.72 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=83.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
+..+|+++|+.++|||||+++|++..... ......+.|.......+.. ++..+.++||||+.++.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHADYV 89 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHHHH
Confidence 44899999999999999999998742110 0111346666665555544 66788999999987664
Q ss_pred CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..... ..+|++++|+|+..+....+...+..+... + .+++++++||+|...
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g---~~~~IvviNK~D~~~ 142 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-G---VPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCEEEEEEEecCCcc
Confidence 33222 778999999999877778877777766532 2 355789999999653
No 185
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.51 E-value=5.8e-14 Score=108.64 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------CCCCCcceeEEEEEEEEe----CCcEEEEEeCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMHRTVLK----DGQVVNVIDTPG 78 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG 78 (240)
++|+++|+.|+|||||+++|++....... ....+.+.........+. ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 47999999999999999999865432110 011223333332333331 235789999999
Q ss_pred CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+.++...... ..+|++++|+|+....+......+..+.. . ..|+++|+||+|.+
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~--~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---E--GLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEECcccC
Confidence 9887543332 88999999999987776665555554432 1 15799999999975
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.51 E-value=7.1e-14 Score=123.94 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=82.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe---CCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK---DGQVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
.++|+++|+.++|||||+++|++....... ..+.|.....+...+. .+..+++|||||+..|...... ..+|+
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 379999999999999999999986653322 1344444444444442 2468999999999887655443 88999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++|++++++...+....+..+.. ...|+++++||+|....
T Consensus 322 aILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCcccc
Confidence 999999987777777666666532 22579999999996543
No 187
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.50 E-value=2.9e-13 Score=119.03 Aligned_cols=144 Identities=21% Similarity=0.292 Sum_probs=94.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.|+++|+.++|||||+++|+|..... ......+.|....+......++..+.+|||||+.++...... .++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 68999999999999999999854211 112234667766655554435667899999999776432222 789999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC---CcEEEEeCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD---NRCVLFDNKT 174 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 174 (240)
++++.++..++...+..+. .++ .+++++|+||+|..... .++..... +..++...+ .+++.++...
T Consensus 82 Vda~eg~~~qT~ehl~il~-~lg---i~~iIVVlNKiDlv~~~--~~~~v~~e-----i~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 82 VACDDGVMAQTREHLAILQ-LTG---NPMLTVALTKADRVDEA--RIAEVRRQ-----VKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred EECCCCCcHHHHHHHHHHH-HcC---CCeEEEEEECCccCCHH--HHHHHHHH-----HHHHHHhcCCCCCcEEEEeCCC
Confidence 9999888888777776553 233 35578999999965432 33332222 444444333 3455666554
Q ss_pred c
Q 036363 175 K 175 (240)
Q Consensus 175 ~ 175 (240)
.
T Consensus 151 G 151 (614)
T PRK10512 151 G 151 (614)
T ss_pred C
Confidence 3
No 188
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.2e-13 Score=102.26 Aligned_cols=114 Identities=22% Similarity=0.221 Sum_probs=85.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|.+|+|||-|+.+++...+.....++.|.. .......+ ++. ...+|||.|+..+...... +++.++
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGve--f~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVE--FATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEE--EEeeceee-cCcEEEEeeecccchhhhccccchhhccccee
Confidence 3789999999999999999998877644444434333 33333444 444 5589999999999866655 999999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++|+|++.+.+.+. .++|+.|+.+... ...+++|.||+|+-
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLN 132 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhh
Confidence 99999998888876 4666677666433 46789999999943
No 189
>PLN00023 GTP-binding protein; Provisional
Probab=99.50 E-value=3.6e-13 Score=108.24 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--------------CCcEEEEEeCCCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--------------DGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~l~DtpG~~~~~~ 84 (240)
..+|+++|..|+|||||++.+++.........+.+.+... ..+.+. ....+.||||+|...+..
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~i--k~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGV--KHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEE--EEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 4899999999999999999999876433323333333222 222221 123578999999988876
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHH-HHHHHHHHHhCC----------CcCCeEEEEEeCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEE-ATLHSLQTLFGK----------NCFDYMIVVFSGRDELE 138 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~----------~~~~~~i~v~~~~D~~~ 138 (240)
.... .+++++|+|+|++++.+.... .++..+...... ....+++||.||+|+..
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 6555 899999999999976666553 455555544210 11357999999999543
No 190
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.50 E-value=2e-13 Score=114.90 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC------cc--------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
.+..+|+++|+.++|||||+++|++... +. ......+.|.......+.. ++..+.+|||||+.++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH
Confidence 3458999999999999999999985311 00 0011246666665555544 5678999999999876
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...... ..+|++++|+++..+....+.+.+..+... ..+++++++||+|...
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV----GVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----CCCEEEEEEEecccCC
Confidence 533222 778999999999877777777777766432 2355668899999664
No 191
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.50 E-value=1.3e-13 Score=105.36 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=72.5
Q ss_pred EcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC
Q 036363 25 VGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR 101 (240)
Q Consensus 25 vG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~ 101 (240)
+|..|+|||||+++++..........+.+.+. ....+.+. ....+.+|||||...+...... +++|++++|+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~--~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEE--EEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence 69999999999999996553222222122222 11222221 2347889999999888765554 8899999999999
Q ss_pred CCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 102 SRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 102 ~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++.+.... .++..+..... ..|+++|.||+|..
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 112 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVK 112 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 77777654 44444555432 36899999999953
No 192
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.49 E-value=2.3e-13 Score=101.32 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=71.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-EEEE---------------------------------------
Q 036363 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMH--------------------------------------- 61 (240)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~--------------------------------------- 61 (240)
|+++|..++|||||+|+|+|....+.+..+...... ..+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999998755544332111100 0000
Q ss_pred -------------EEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Q 036363 62 -------------RTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKN 122 (240)
Q Consensus 62 -------------~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~ 122 (240)
.........+.++||||+.+....... ...|+++||+++...++..+...+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---- 156 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---- 156 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----
Confidence 000102246889999999875444323 999999999999977777776666665532
Q ss_pred cCCeEEEEEeCC
Q 036363 123 CFDYMIVVFSGR 134 (240)
Q Consensus 123 ~~~~~i~v~~~~ 134 (240)
....+++|+||+
T Consensus 157 ~~~~~i~V~nk~ 168 (168)
T PF00350_consen 157 DKSRTIFVLNKA 168 (168)
T ss_dssp TCSSEEEEEE-G
T ss_pred CCCeEEEEEcCC
Confidence 234589999984
No 193
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.49 E-value=6.2e-13 Score=97.22 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||++.+++...+.... .+.+.......... ++ ..+.+|||||...+...... ...+.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYK--PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCC--CCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEE
Confidence 689999999999999999999987332222 23333333333444 55 57889999997666443322 5566677
Q ss_pred EEEECCCC-CCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSR-FSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~-~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++|.... .+..+ ......+...... ..|+++++||+|....
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence 77776533 22222 2333344433322 3679999999996543
No 194
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.49 E-value=3.3e-13 Score=104.56 Aligned_cols=114 Identities=20% Similarity=0.130 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE-eCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL-KDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
..+|+++|++|||||||++.++..........+.+..... ..... .+...+.+|||||...+...... ...++++
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHP--LKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEE--EEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 3899999999999999997554433222222222222211 11111 12347789999998776544433 6789999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|++++++.+.... .++..+..... ..|+++++||+|..
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVK 126 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCc
Confidence 99999876666553 34444443322 25688899999953
No 195
>PRK10218 GTP-binding protein; Provisional
Probab=99.49 E-value=3.2e-13 Score=118.21 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=86.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC-cccc-------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
.++|+++|+.++|||||+++|+.... +... ....+.|.......+.| ++..+++|||||+.++..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFGG 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhHH
Confidence 48999999999999999999996322 1111 11345666666666777 888999999999999876
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.... ..+|++++|+|+..+...+....+..+... ..|.++++||+|...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~~ 134 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-----GLKPIVVINKVDRPG 134 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-----CCCEEEEEECcCCCC
Confidence 5444 899999999999877777777777666432 245789999999653
No 196
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.49 E-value=1.8e-13 Score=106.29 Aligned_cols=113 Identities=20% Similarity=0.277 Sum_probs=76.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeEEEEEEEEeCCcEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMHRTVLKDGQVV 71 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (240)
+|+++|+.|+|||||+.+|+...... ......+.|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 48999999999999999986321110 0111245666666677777 88899
Q ss_pred EEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 72 NVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 72 ~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+|||||+.++...... ..+|++++|+|+++. ...+....+..+ ..++ .+|+++++||+|...
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiivvNK~Dl~~ 151 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEEEEcccccc
Confidence 99999998765432222 779999999999853 222333433333 2222 267899999999663
No 197
>PRK00007 elongation factor G; Reviewed
Probab=99.48 E-value=1.4e-13 Score=123.27 Aligned_cols=118 Identities=22% Similarity=0.270 Sum_probs=89.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCC---ccccC-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRA---FKSRA-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~---~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (240)
....++|+|+|+.++|||||+++|+.... ..... ...+.|.........| .+..++++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 44568999999999999999999973221 10000 1346677777777778 8899999999999
Q ss_pred CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.++...... ..+|++++|+|+..+...++...+..+... ..|+++++||+|....
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-----KVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 877553222 888999999999988888888888877642 2457899999997754
No 198
>PLN03127 Elongation factor Tu; Provisional
Probab=99.48 E-value=3.4e-13 Score=114.61 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=83.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC------cc--------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
+..+|+++|+.++|||||+++|++... .. ......+.|.......+.+ ++..+.++||||+.++.
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADYV 138 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccchH
Confidence 458999999999999999999974310 00 0111256677766666665 67789999999997654
Q ss_pred CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..... ..+|++++|+|+..+...++.+.+..+... + .+.+++++||+|...
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-g---ip~iIvviNKiDlv~ 191 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G---VPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCeEEEEEEeeccCC
Confidence 33222 779999999999877778777777766532 2 244688999999764
No 199
>PRK04213 GTP-binding protein; Provisional
Probab=99.48 E-value=8.7e-13 Score=101.13 Aligned_cols=109 Identities=22% Similarity=0.198 Sum_probs=67.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---------- 87 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------- 87 (240)
...+|+++|++|+|||||+|+|++.... .+. ..+.|.... ...+ . .+.+|||||+........
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~-~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGK-RPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-CCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4489999999999999999999987632 222 223343322 2223 2 688999999754332110
Q ss_pred -------CCCceEEEEEEECCCCCC-----------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 88 -------FDEIHAALVVFSVRSRFS-----------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 88 -------~~~~~~~l~v~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...++++++|+|...... ..+...+..+.. ...|+++|+||+|...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIK 144 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccC
Confidence 035678889998863211 122333333321 1257899999999543
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.48 E-value=1.2e-12 Score=102.45 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=57.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc---------CCCc
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---------FDEI 91 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------~~~~ 91 (240)
+|+++|++|+|||||+|+|+|....... ..+.|..+......+ ++..+.+|||||+........ .+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~--~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA--YEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC--CCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 6899999999999999999997643222 133444444445556 788899999999876542111 1789
Q ss_pred eEEEEEEECCC
Q 036363 92 HAALVVFSVRS 102 (240)
Q Consensus 92 ~~~l~v~~~~~ 102 (240)
|++++|+|+++
T Consensus 79 d~il~V~D~t~ 89 (233)
T cd01896 79 DLILMVLDATK 89 (233)
T ss_pred CEEEEEecCCc
Confidence 99999999873
No 201
>PRK00049 elongation factor Tu; Reviewed
Probab=99.48 E-value=3.4e-13 Score=113.40 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=82.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
+..+|+++|+.++|||||+++|++..... ......+.|.......+.+ ++..+.++||||+.++.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHADYV 89 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHHHH
Confidence 44899999999999999999998732100 0011345666665555555 66788999999987654
Q ss_pred CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..... ..+|++++|+|+..+....+...+..+... + .+.+++++||+|...
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g---~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G---VPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C---CCEEEEEEeecCCcc
Confidence 33222 889999999999877888877777766532 2 243456899999754
No 202
>PRK12739 elongation factor G; Reviewed
Probab=99.47 E-value=1.5e-13 Score=123.07 Aligned_cols=117 Identities=25% Similarity=0.324 Sum_probs=88.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--c--------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--R--------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (240)
...++|+++|+.++|||||+++|+....... + ....+.|.........| ++..++++||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence 3458999999999999999999975321100 0 01346777777777888 88999999999998
Q ss_pred CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++...... ..+|++++|+|+..+....+...+..+... ..|+++++||+|....
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-----GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 76553332 888999999999988888888887776532 2467899999997754
No 203
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.47 E-value=6.3e-13 Score=96.31 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=71.1
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe---CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363 24 LVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK---DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF 98 (240)
Q Consensus 24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~ 98 (240)
++|++|+|||||+|.|++......... .|. ......... .+..+.+||+||.......... ..+|++++|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~---~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 76 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYE---TTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVY 76 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccc---cch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999998765222111 111 222222221 2557899999998876554333 8899999999
Q ss_pred ECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 99 SVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 99 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++...+......+.............|+++++||+|....
T Consensus 77 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 77 DVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred ECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 99865555544433111111113334789999999996544
No 204
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.47 E-value=3.3e-13 Score=116.67 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc--ccC------------------CCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--SRA------------------SSSGVTSTCEMHRTVLKDGQVVNVIDTP 77 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (240)
..++|+++|+.++|||||++.|+...... .+. ...+.+.........+ ++..+++||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC
Confidence 44899999999999999999986321111 010 0124455555566677 88899999999
Q ss_pred CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+.++...... ..+|++++|+|+..+........++.+.. ...|+++++||+|...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccC
Confidence 99877643322 88999999999987776666666654432 1257999999999653
No 205
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.47 E-value=7.3e-13 Score=100.42 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEE-EEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-HRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
.+|+++|++|+|||||+++++.......... |....+ ....+ .+ ..+.+|||||...+...... ..+|++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ 76 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHP----TVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVI 76 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC----cccceEEEEEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEE
Confidence 5899999999999999999985543322111 111111 12223 33 34689999998766543322 788999
Q ss_pred EEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++++++++.-+.... .++..+....+ ..|+++|.||+|..
T Consensus 77 llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~ 118 (187)
T cd04129 77 LIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR 118 (187)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence 999999865555543 35555554332 26899999999953
No 206
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.8e-13 Score=99.41 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=100.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|.+|+|||.++-++....+..+...+.|.. ........ ++. .+.+|||.|...+.+.... +++++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGID--Fk~kti~l-~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGID--FKIKTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEE--EEEEEEEe-CCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 34899999999999999999998776544444333333 33334444 433 6689999999999877666 99999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
+++|+|+++..+.+. ..+++.+.+.-.. ..+.++|.||+|.-... . -..+.-..+....+.+++..+.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R--~-------V~~e~ge~lA~e~G~~F~EtSA 156 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKR--Q-------VSKERGEALAREYGIKFFETSA 156 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccc--c-------ccHHHHHHHHHHhCCeEEEccc
Confidence 999999998888776 4667777665333 46799999999944321 1 1123334556666777776666
Q ss_pred CCc
Q 036363 173 KTK 175 (240)
Q Consensus 173 ~~~ 175 (240)
...
T Consensus 157 k~~ 159 (207)
T KOG0078|consen 157 KTN 159 (207)
T ss_pred cCC
Confidence 544
No 207
>PLN03126 Elongation factor Tu; Provisional
Probab=99.47 E-value=2.8e-13 Score=115.76 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=85.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
.+..+|+++|+.++|||||+++|++..... ......+.|.......+.+ ++..+.++||||+.++
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f 157 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY 157 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH
Confidence 345899999999999999999998632110 1122245666665555666 7788999999999887
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...... ..+|++++|+|+..+......+.+..+.. ++ .+++++++||+|...
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~g---i~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VG---VPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEecccccC
Confidence 543333 78899999999997887777777766543 22 355889999999654
No 208
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.47 E-value=4.6e-13 Score=115.83 Aligned_cols=148 Identities=19% Similarity=0.323 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCc--cccC------------------CCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAF--KSRA------------------SSSGVTSTCEMHRTVLKDGQVVNVIDTP 77 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (240)
..++|+|+|+.|+|||||++.|+..... ..+. ...+.+.......+.+ ++..+++||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC
Confidence 4589999999999999999999632111 0000 0123445555556667 88899999999
Q ss_pred CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc----ccHHHHhccc
Q 036363 78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND----ETLEDYLGRE 151 (240)
Q Consensus 78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~----~~~~~~~~~~ 151 (240)
|+.++...... ..+|++++|+|++.+........+..+.. ...|+++++||+|...... ..+++.+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~ 162 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-----RDTPIFTFINKLDRDGREPLELLDEIEEVLGIA 162 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-----cCCCEEEEEECCcccccCHHHHHHHHHHHhCCC
Confidence 99887653333 88999999999987777666666655432 2257999999999654331 1233333221
Q ss_pred C---------CchHHHHHHHhCCcEEEEe
Q 036363 152 C---------PKPLKEILHLFDNRCVLFD 171 (240)
Q Consensus 152 ~---------~~~~~~~~~~~~~~~~~~~ 171 (240)
. ...++++++....+.+.|.
T Consensus 163 ~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~ 191 (526)
T PRK00741 163 CAPITWPIGMGKRFKGVYDLYNDEVELYQ 191 (526)
T ss_pred CeeEEeccccCCceeEEEEeecceeeecc
Confidence 0 2334555566666666664
No 209
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.46 E-value=8.8e-14 Score=102.81 Aligned_cols=139 Identities=20% Similarity=0.221 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+|+++|+.|+|||||++.+.+...........+. ......... ++. .+.+||++|...+...... ..+|++++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii 77 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVSI-DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIII 77 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEEE-TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccc--ccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999987654333222222 222223333 333 5789999997655432222 89999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
|++.+++-+.... .++..+....+ ...|++++.||.|........ ......+....+..|...+..
T Consensus 78 ~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~---------~~~~~~~~~~~~~~~~e~Sa~ 144 (162)
T PF00071_consen 78 VFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVS---------VEEAQEFAKELGVPYFEVSAK 144 (162)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSC---------HHHHHHHHHHTTSEEEEEBTT
T ss_pred ccccccccccccccccccccccccc--ccccceeeeccccccccccch---------hhHHHHHHHHhCCEEEEEECC
Confidence 9999866555543 44455554443 236899999999954322111 122355566666666666654
No 210
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.46 E-value=4.7e-13 Score=114.71 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC-----------------CCCCcceeEEEEEEEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMHRTVL 65 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~ 65 (240)
....+|+++|+.++|||||+++|+....... +. ...+.|....+....+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4558999999999999999999985532111 10 0134566666666666
Q ss_pred eCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 66 KDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++..+.++||||+.++...... ..+|++++|+|+..+....+...+..+ ..++ .+++++++||+|....
T Consensus 105 -~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~-~~lg---~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 105 -EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIA-TLLG---IKHLVVAVNKMDLVDY 175 (474)
T ss_pred -CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHH-HHhC---CCceEEEEEeeccccc
Confidence 7788999999998766432222 889999999999876665554444333 2333 2578999999997643
No 211
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.46 E-value=2.3e-12 Score=96.60 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=81.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
....+|+++|+.||||||+++.|....... ...|.......+.+ .+..+.+||.+|...+...+.. ..+|++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccccccccceeecccccee
Confidence 345899999999999999999998754322 22244445555666 8889999999998877666666 899999
Q ss_pred EEEEECCCCCCHH-HHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQE-EEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+||+|.++.-... ....+..+.... .....|+++++||.|...
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPD 129 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTT
T ss_pred EEEEecccceeecccccchhhhcchh-hcccceEEEEeccccccC
Confidence 9999998543332 234444443321 112478999999999544
No 212
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=5.9e-13 Score=113.29 Aligned_cols=116 Identities=23% Similarity=0.316 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc-----------------------------cCCCCCcceeEEEEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (240)
+..+|+++|+.++|||||+++|+....... .....+.|.........+ ++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~ 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DK 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CC
Confidence 348999999999999999999984221100 011236677766666666 77
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC---CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR---FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+.+|||||+.++...... ..+|++++|+|++++ ........+. +...++ .+++++++||+|...
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~---~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG---INQLIVAINKMDSVN 155 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC---CCeEEEEEEChhccC
Confidence 88999999998776432222 789999999999866 2222222222 222333 257999999999654
No 213
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.46 E-value=2.8e-13 Score=103.89 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=69.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE---eCCcEEEEEeCCCCCCCCCCCcC--CCc-eEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL---KDGQVVNVIDTPGLFDFSAGSEF--DEI-HAA 94 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~--~~~-~~~ 94 (240)
+|+++|++|+|||||++.|.+.....+..+. ......... ..+..+.+|||||+..+...... ... +++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-----~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~v 76 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-----EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGI 76 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-----eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEE
Confidence 6899999999999999999987543222111 111111111 13567899999999876433222 555 999
Q ss_pred EEEEECCCCC-CHHH-HHHHHHHHHHh-CCCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRF-SQEE-EATLHSLQTLF-GKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~-~~~~-~~~l~~l~~~~-~~~~~~~~i~v~~~~D~~~~ 139 (240)
+||+|+.... +..+ ...+..+.... ......|++++.||+|....
T Consensus 77 V~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 77 VFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9999998442 1121 22222222111 11124689999999997644
No 214
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.45 E-value=5.6e-13 Score=112.46 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c-----------------CCCCCcceeEEEEEEEEeCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKS--------------R-----------------ASSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~-----------------~~~~~~t~~~~~~~~~~~~~ 68 (240)
.+|+++|+.++|||||++.|+....... + ....+.|.........+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 3799999999999999999974432110 0 01235566666666666 77
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+.++||||+.++...... ..+|++++|+|+..+...+..+.+..+. .++ .+++++++||+|....
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~-~~~---~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIAS-LLG---IRHVVLAVNKMDLVDY 148 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHH-HcC---CCcEEEEEEecccccc
Confidence 89999999998876432222 8899999999998777776665555443 223 3568999999997643
No 215
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.45 E-value=4.5e-13 Score=98.73 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHA 93 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~ 93 (240)
.+|+++|++|+|||||+|.|.|..... ..+. ...+ ... .+|||||+......... ..+|+
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~-----~v~~-~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQ-----AVEF-NDK--GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccce-----EEEE-CCC--CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 479999999999999999999864211 1111 1222 222 27999998654432221 78999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+++|+|++...+.... ++... .. ..|+++++||+|..
T Consensus 68 il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 68 LIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMP 104 (158)
T ss_pred EEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccC
Confidence 9999999855443222 12221 11 25689999999953
No 216
>PRK09866 hypothetical protein; Provisional
Probab=99.44 E-value=3.4e-11 Score=103.88 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=50.5
Q ss_pred cEEEEEeCCCCCCCCCCC--cC-----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGS--EF-----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~--~~-----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+.++||||+....... .. ..+|+++||+|++...+..+..+++.+... +. ..|+++|+||+|...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEcccCCC
Confidence 467899999998654321 11 889999999999877888888887777542 11 137999999999764
No 217
>COG2262 HflX GTPases [General function prediction only]
Probab=99.44 E-value=1.2e-12 Score=106.49 Aligned_cols=121 Identities=25% Similarity=0.235 Sum_probs=89.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------- 88 (240)
.....|+++|-+++|||||+|+|++...+.... ...|-........+.++..+.+.||-||.+.....--
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~--LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQ--LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccc--ccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH
Confidence 345799999999999999999999887654433 3445444445556645789999999999987655432
Q ss_pred --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
..+|.++.|+|++++...........+...++... .|+++|+||.|.+.+.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~-~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE-IPIILVLNKIDLLEDE 320 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC-CCEEEEEecccccCch
Confidence 89999999999997744444555555555555333 7899999999987654
No 218
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.44 E-value=5e-13 Score=116.61 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-----------------CCcEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----------------DGQVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~ 82 (240)
..|+++|+.++|||||+|+|++....... ..+.|.........+. ....+.+|||||+..+
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 68999999999999999999987643221 1222322111111110 0123789999999877
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...... ..+|++++|++++++...++...+..+... ..|+++++||+|...
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 654443 889999999999977777777666655421 256999999999653
No 219
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=1.4e-13 Score=96.07 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+..|+|.+|+|||+|+-++....+. +.....+........... ++ ..+.+|||.|...|.+.... +++|+++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 35678999999999999988876542 222233334444444555 33 36789999999998776655 9999999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|+++.-|... +++|+.+...+.. .|-++|.||.|..+.
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER 127 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc
Confidence 9999998888776 6788888876653 567999999995543
No 220
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.44 E-value=5.3e-13 Score=96.54 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=62.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc------CCCceEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE------FDEIHAA 94 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~------~~~~~~~ 94 (240)
+|+++|++|+|||||+|++++.... ...|.. ..+ .. .+|||||......... ...+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~~~~~~~~~~~~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYVENRRLYSALIVTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhhhhHHHHHHHHHHhhcCCEE
Confidence 7999999999999999999987531 111221 222 22 5899999732111000 1689999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+.....++. .++ .|+++|+||+|...
T Consensus 67 ilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 67 ALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred EEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence 9999998776655433222 222 37899999999543
No 221
>PRK13351 elongation factor G; Reviewed
Probab=99.44 E-value=6.9e-13 Score=119.12 Aligned_cols=116 Identities=22% Similarity=0.296 Sum_probs=85.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc---c----cC---------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK---S----RA---------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~---~----~~---------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (240)
..++|+++|+.|+|||||+++|+...... + +. ...+.|.........| .+..+++|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 45899999999999999999997532110 0 00 0134455555666777 888999999999988
Q ss_pred CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+...... ..+|++++|+|++.+........+..+... ..|+++++||+|....
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence 7654333 889999999999987777777777665432 2568899999996654
No 222
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.43 E-value=1e-12 Score=102.81 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=85.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------- 88 (240)
.....|++||.+++|||||.|.+.|...+.... ...|+.+....+...+...+.+.||||+.........
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~--K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR--KVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccc--cccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 345899999999999999999999987755433 3344444444444437778999999999877655443
Q ss_pred ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|+++.-..-.-..|+.+..... .|.++|.||.|.+..
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQ 200 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchh
Confidence 78999999999985333344556666665432 468999999998754
No 223
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.7e-11 Score=102.85 Aligned_cols=115 Identities=18% Similarity=0.272 Sum_probs=98.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
+..|-++|+-..|||||+..|-+....... ..|+|.....+.+..+.+..+++.||||+..|..++.. ...|.+++
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhh--cCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 379999999999999999999887764443 36888888888888888899999999999999887766 88999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
|+-+.++.-++..+.++..+. ...|+|+.+||+|+-..+
T Consensus 231 VVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 231 VVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGAN 269 (683)
T ss_pred EEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCC
Confidence 999999999998888888853 346899999999976554
No 224
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=6.7e-13 Score=96.39 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
..+++++|.+|+|||.|+..++...+.+....+.|... ....+.+. ...++.+|||.|+..|.+.... +++.++|
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvef--g~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEF--GARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeee--ceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 47999999999999999999998876444333333333 22333331 3347899999999998776665 8999999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+|+|++.+-+.... .+|..++..... .--++++.||+|+.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~--NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNE--NMVIMLIGNKSDLE 124 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCC--CcEEEEEcchhhhh
Confidence 99999988887764 566666654322 23467789999944
No 225
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=3.5e-12 Score=97.13 Aligned_cols=114 Identities=18% Similarity=0.088 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCcHHHHHH-HHhCCCCcccc-CCCCCccee--EEEE-E--------EEEeC--CcEEEEEeCCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGN-SILGRRAFKSR-ASSSGVTST--CEMH-R--------TVLKD--GQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin-~l~g~~~~~~~-~~~~~~t~~--~~~~-~--------~~~~~--~~~~~l~DtpG~~~~~~ 84 (240)
.+|+++|..|+|||||+. .+.+....... ......|.. ..+. . ... + ...+.+|||+|......
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~~~ 81 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDKDR 81 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhhhh
Confidence 789999999999999995 55543221110 000111110 0000 0 012 2 34678999999975332
Q ss_pred CCcCCCceEEEEEEECCCCCCHHHHH--HHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 85 GSEFDEIHAALVVFSVRSRFSQEEEA--TLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 85 ~~~~~~~~~~l~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
....+++|++++|+|++++.+..... ++..+..... ..|+++|.||+|..
T Consensus 82 ~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~ 133 (195)
T cd01873 82 RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLR 133 (195)
T ss_pred cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcc
Confidence 22238999999999999887777653 4555554432 35799999999953
No 226
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.43 E-value=2.8e-12 Score=94.51 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=72.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcCCCceEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEFDEIHAALVVF 98 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~ 98 (240)
+|+++|++|+|||||++.++....... ..+.+... .....+ ++ ..+.+|||+|..... ....+|++++|+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~---~~~i~~-~~~~~~l~i~D~~g~~~~~---~~~~~~~~ilv~ 73 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRF---KKEVLV-DGQSHLLLIRDEGGAPDAQ---FASWVDAVIFVF 73 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccce---EEEEEE-CCEEEEEEEEECCCCCchh---HHhcCCEEEEEE
Confidence 799999999999999998876543222 21111111 122333 44 357899999996421 126789999999
Q ss_pred ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
|.+++-+.+. ..++..+...... ...|+++|.||.|.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl 111 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAI 111 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHh
Confidence 9998888777 4566666544321 23579999999884
No 227
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.43 E-value=9.9e-13 Score=116.95 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=81.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC-----------------CCCCcceeEEEEEEE
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMHRTV 64 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~ 64 (240)
..+..+|+++|+.++|||||++.|+....... +. ...+.|....+....
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34458999999999999999999986532211 10 012455555555666
Q ss_pred EeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 65 LKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 65 ~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+ ++..+.++||||+.++...... ..+|++++|+|+..+...+....+..+.. ++ .+++++++||+|...
T Consensus 101 ~-~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~---~~~iivvvNK~D~~~ 171 (632)
T PRK05506 101 T-PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASL-LG---IRHVVLAVNKMDLVD 171 (632)
T ss_pred c-CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hC---CCeEEEEEEeccccc
Confidence 6 7788999999998765322212 88999999999987766655555444432 23 267899999999764
No 228
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.43 E-value=5.5e-13 Score=117.02 Aligned_cols=114 Identities=25% Similarity=0.286 Sum_probs=80.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccc------cC-------CCCCcceeEEEEEEEEe--C--CcEEEEEeCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKS------RA-------SSSGVTSTCEMHRTVLK--D--GQVVNVIDTPGLFD 81 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~------~~-------~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~~ 81 (240)
.++|+++|+.++|||||+++|+......+ .. ...+.|.........|. + ...+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 58999999999999999999986432111 00 11355555544444442 1 25789999999999
Q ss_pred CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+...... ..+|++++|+|++++.+.++...+..+.. . ..|+++|+||+|..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~ 135 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N--DLEIIPVINKIDLP 135 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c--CCCEEEEEECcCCC
Confidence 8654444 88999999999998777776655544432 1 24689999999954
No 229
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.42 E-value=8e-13 Score=112.46 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc-----------------------------cCCCCCcceeEEEEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (240)
+..+|+++|+.++|||||+.+|+....... .....+.|.........+ ++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence 348999999999999999998874221100 011246677777777777 78
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-------CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-------SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
..++++||||+.+|...... ..+|++++|+|+..+. ..+..+.+..+. .+| .+++++++||+|.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~g---i~~iiv~vNKmD~ 157 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLG---VKQMIVCINKMDD 157 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcC---CCeEEEEEEcccc
Confidence 89999999999887544333 8999999999998654 245555555543 223 3668899999994
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.41 E-value=1.3e-12 Score=101.38 Aligned_cols=113 Identities=20% Similarity=0.182 Sum_probs=75.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccc-cCC-----------CCCccee------------------------EEEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKS-RAS-----------SSGVTST------------------------CEMHRTV 64 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~-----------~~~~t~~------------------------~~~~~~~ 64 (240)
+|+++|+.++|||||++.++......+ +.. ..|.|.. .....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999985332111 000 0111110 0001122
Q ss_pred EeCCcEEEEEeCCCCCCCCCCCcC----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 65 LKDGQVVNVIDTPGLFDFSAGSEF----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 65 ~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
. .+..++++||||+.++...... ..+|++++|+++..+....+...+..+... + .|+++|+||+|.+..
T Consensus 81 ~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 K-SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVVVTKIDLAPA 153 (224)
T ss_pred e-CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEECccccCH
Confidence 2 5678999999999776433222 368999999999888888888888877642 2 458999999997643
No 231
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.41 E-value=8.1e-12 Score=97.31 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc--CCCCCcce-----------------------------------------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSR--ASSSGVTS----------------------------------------- 56 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~--~~~~~~t~----------------------------------------- 56 (240)
..|++||++|+||||++++|+|...++.+ ..+...+.
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999998532222 11100000
Q ss_pred ------eEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc--C--------------CCceEEEEEEECCCCCCHHH-HHHHH
Q 036363 57 ------TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE--F--------------DEIHAALVVFSVRSRFSQEE-EATLH 113 (240)
Q Consensus 57 ------~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~--------------~~~~~~l~v~~~~~~~~~~~-~~~l~ 113 (240)
..-...+..++...++++||||+........ . ...+.+++|++++..+...+ ....+
T Consensus 107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~ 186 (240)
T smart00053 107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK 186 (240)
T ss_pred CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence 0000001111224789999999975422111 0 34568899999987777665 35544
Q ss_pred HHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 114 SLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 114 ~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
.+.. ...++++|+||.|.+.+.
T Consensus 187 ~ld~-----~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 187 EVDP-----QGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHH-----cCCcEEEEEECCCCCCcc
Confidence 4432 236799999999987653
No 232
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.1e-12 Score=91.82 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|++||..|+|||-|++.++...++++.....|.... ...+.+ ++ ..+.+|||.|...|.+.... +.+|+++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfm--iktvev-~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM--IKTVEV-NGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEE--EEEEEE-CCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 68999999999999999999988776665444444333 334444 43 46789999999999877666 9999999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|++...+..- -++++.+.+.-.. ..-.|+|.||.|..+.
T Consensus 85 lvydiscqpsfdclpewlreie~yan~--kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYANN--KVLKILVGNKIDLADR 127 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhhc--ceEEEeeccccchhhh
Confidence 9999997777665 4667777665333 2346899999995543
No 233
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.40 E-value=3e-12 Score=110.42 Aligned_cols=111 Identities=23% Similarity=0.253 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
.+|+++|++++|||||+|+|+|.....+.. .|.|++........ .+..+.++|.||.++....... .
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNw--pGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNW--PGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCC--CCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 679999999999999999999988654444 68888888787777 8888999999999988766544 8
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
.+|+++-|+|++ .+.. .+....+.+.- ..|+++++|.+|..+..
T Consensus 81 ~~D~ivnVvDAt-nLeR----nLyltlQLlE~--g~p~ilaLNm~D~A~~~ 124 (653)
T COG0370 81 KPDLIVNVVDAT-NLER----NLYLTLQLLEL--GIPMILALNMIDEAKKR 124 (653)
T ss_pred CCCEEEEEcccc-hHHH----HHHHHHHHHHc--CCCeEEEeccHhhHHhc
Confidence 889999999998 3322 22222222221 25699999999976543
No 234
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.40 E-value=1.4e-12 Score=114.25 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe----------C-------CcEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK----------D-------GQVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~l~DtpG~~~~ 82 (240)
..|+++|+.++|||||+++|.+....... ..+.|.........+. . -..+.+|||||+.+|
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 78999999999999999999987542221 1222222211111100 0 012689999999988
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
...... ..+|++++|+|++++...+....+..+.. ...|+++++||+|..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 654443 77999999999997777777777665543 125699999999964
No 235
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.8e-11 Score=94.61 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=82.6
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC---CcEEEEEeCCCCCCCCCCC
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD---GQVVNVIDTPGLFDFSAGS 86 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~ 86 (240)
++-++..|-..+|+.||.+|.|||||+.+|.+...-....+..-.++......+.+.. ...++++||.|+.+.....
T Consensus 33 V~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~ 112 (406)
T KOG3859|consen 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKE 112 (406)
T ss_pred HHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcc
Confidence 5567778888999999999999999999999876422211111122222222222211 2367899999999876554
Q ss_pred cC-------------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363 87 EF-------------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR 134 (240)
Q Consensus 87 ~~-------------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~ 134 (240)
.. ..+|+++|.+.++ .++..-+.-.++.+.. ..++|.|+.|+
T Consensus 113 ~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds------kVNIIPvIAKa 186 (406)
T KOG3859|consen 113 DSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS------KVNIIPVIAKA 186 (406)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh------hhhhHHHHHHh
Confidence 43 8899999999988 3444455555555543 25688889999
Q ss_pred CCCCC
Q 036363 135 DELEA 139 (240)
Q Consensus 135 D~~~~ 139 (240)
|.+..
T Consensus 187 DtisK 191 (406)
T KOG3859|consen 187 DTISK 191 (406)
T ss_pred hhhhH
Confidence 96644
No 236
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.1e-12 Score=112.17 Aligned_cols=150 Identities=24% Similarity=0.332 Sum_probs=109.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--cCC--------------CCCcceeEEEEEEEEeCC-cEEEEEeCCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--RAS--------------SSGVTSTCEMHRTVLKDG-QVVNVIDTPGL 79 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~ 79 (240)
...++|+++|+..+|||||..+|+-.....+ +.. ..|.|......+..| .+ ..++++||||+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCc
Confidence 3459999999999999999999874433221 111 237788888888888 74 99999999999
Q ss_pred CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc----ccHHHHhcccC-
Q 036363 80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND----ETLEDYLGREC- 152 (240)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~----~~~~~~~~~~~- 152 (240)
.||...... +..|++++|+++..+...+....|+.+.+. ..|.++++||+|.+..+. ..+.+.+....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~ 161 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGADFYLVVEQLKERLGANPV 161 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccChhhhHHHHHHHhCCCce
Confidence 999887766 999999999999999999999999998642 356899999999885532 23333333210
Q ss_pred --------CchHHHHHHHhCCcEEEEeC
Q 036363 153 --------PKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~~~ 172 (240)
...+.+.+.....+.+.|..
T Consensus 162 ~v~~pIg~~~~f~g~idl~~~~~~~~~~ 189 (697)
T COG0480 162 PVQLPIGAEEEFEGVIDLVEMKAVAFGD 189 (697)
T ss_pred eeeccccCccccCceeEhhhcCeEEEcC
Confidence 12334445555566666663
No 237
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.38 E-value=1.4e-12 Score=114.70 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=80.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------------CCCCCcceeEEEEEEEEe----CCcEEEEEeCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMHRTVLK----DGQVVNVIDTPGLF 80 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~ 80 (240)
..++|+++|+.++|||||+.+|+........ ....+.|.........|. .+..+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4589999999999999999999754221100 012345555444444441 14678999999999
Q ss_pred CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++...... ..+|++++|+|++++....+...+..+.. . ..|+++|+||+|...
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~--~lpiIvViNKiDl~~ 140 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---N--DLEIIPVLNKIDLPA 140 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C--CCCEEEEEECCCCCc
Confidence 98654444 88999999999997777776655555432 1 246899999999543
No 238
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.38 E-value=5.6e-12 Score=89.71 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=100.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|.++|..||||||+++.+++... ....+|...+..+..+ ++..+++||..|.-.....+.+ ...|+++|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 48999999999999999999999763 2244566677777777 8999999999999888877777 89999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (240)
|+|..++...++ ...+..+... ..-...+++++.||.|.-..- ..++.... ..+..+...+.++....+.-.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~~l--~~~~i~~~---~~L~~l~ks~~~~l~~cs~~t 162 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPGAL--SLEEISKA---LDLEELAKSHHWRLVKCSAVT 162 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCcccc--CHHHHHHh---hCHHHhccccCceEEEEeccc
Confidence 999987777665 4444444321 012235799999999943221 22222111 123555566667766666543
No 239
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=1.5e-12 Score=118.81 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=86.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeEEEEEEEEe--------------
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMHRTVLK-------------- 66 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~-------------- 66 (240)
.+...++|+++|+.++|||||+.+|+......... ...+.|.........|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 45567899999999999999999998554321110 01233444333344441
Q ss_pred -CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 67 -DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 67 -~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+..++++||||+.+|...... ..+|++++|+|+..+........|+.+... ..|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEECCccc
Confidence 1567899999999998766544 889999999999988888888888877532 25689999999976
No 240
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.37 E-value=5.2e-12 Score=106.69 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=74.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeEEEEEEE--------------E-----------eCCcEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMHRTV--------------L-----------KDGQVV 71 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (240)
+..+|+++|+.++|||||++.|++...... .....+.|....+.... . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 348999999999999999999987532110 01112223322211110 0 013578
Q ss_pred EEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 72 NVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 72 ~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.+|||||+.++...... ..+|++++|+|++.+. ..+....+..+ ..++ .+++++++||+|....
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEEEEccccCCH
Confidence 99999999877543322 7789999999999655 44555555544 3333 2578999999996643
No 241
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.36 E-value=3.6e-12 Score=107.61 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEE--------------e-----------CCcEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVL--------------K-----------DGQVV 71 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~--------------~-----------~~~~~ 71 (240)
+..+|+++|+.|+|||||+.+|++..... ......+.|....+....+ . ....+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 44899999999999999999997742111 1111233444433211111 0 02578
Q ss_pred EEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 72 NVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 72 ~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.+|||||+.++...... ..+|++++|+|++.+. .......+..+. .++ .+++++|+||+|....
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~---i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALD-IIG---IKNIVIVQNKIDLVSK 154 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCcEEEEEEeeccccc
Confidence 99999998776432222 6679999999999665 555555555443 222 2568999999997653
No 242
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.36 E-value=3.9e-12 Score=90.42 Aligned_cols=95 Identities=21% Similarity=0.249 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHA 93 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~ 93 (240)
.+|+|||++|||||||+++|.|.... ..-|.... + .+ .++||||-+-....... ..+|.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~------~~KTq~i~-----~-~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR------YKKTQAIE-----Y-YD---NTIDTPGEYIENPRFYHALIVTAQDADV 66 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC------cCccceeE-----e-cc---cEEECChhheeCHHHHHHHHHHHhhCCE
Confidence 68999999999999999999986531 11122222 1 11 26999996644332222 88999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+++|.|++.+.+.---.+ ...| .+|+|-|+||+|..
T Consensus 67 V~ll~dat~~~~~~pP~f----a~~f----~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 67 VLLLQDATEPRSVFPPGF----ASMF----NKPVIGVITKIDLP 102 (143)
T ss_pred EEEEecCCCCCccCCchh----hccc----CCCEEEEEECccCc
Confidence 999999985433221112 1222 36799999999955
No 243
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.5e-11 Score=103.08 Aligned_cols=146 Identities=21% Similarity=0.270 Sum_probs=106.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC-------------CCCCcceeEEEEEEEEeCC---cEEEEEeCCC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA-------------SSSGVTSTCEMHRTVLKDG---QVVNVIDTPG 78 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG 78 (240)
|.++.+++++|.+-..|||||..+|+....+.... ...|+|...+..+..| .+ ..++++||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify-~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY-KDGQSYLLNLIDTPG 134 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE-EcCCceEEEeecCCC
Confidence 33667999999999999999999987543321110 1247888888777777 54 7889999999
Q ss_pred CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchH
Q 036363 79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPL 156 (240)
Q Consensus 79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~ 156 (240)
+.||..+... ..++++|+|+|+..+.-.+....+....+. .-.+|.|+||+|.-..+ .+..... +
T Consensus 135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~ad---pe~V~~q-----~ 201 (650)
T KOG0462|consen 135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSAD---PERVENQ-----L 201 (650)
T ss_pred cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCC---HHHHHHH-----H
Confidence 9999887766 889999999999988888876666555432 13489999999954443 3333323 5
Q ss_pred HHHHHHhCCcEEEEeCCC
Q 036363 157 KEILHLFDNRCVLFDNKT 174 (240)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~ 174 (240)
..++..++......+.+.
T Consensus 202 ~~lF~~~~~~~i~vSAK~ 219 (650)
T KOG0462|consen 202 FELFDIPPAEVIYVSAKT 219 (650)
T ss_pred HHHhcCCccceEEEEecc
Confidence 667777777777666553
No 244
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.35 E-value=5.8e-12 Score=97.79 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|+.|+|||||++++.+...........+ ..... ...... ...+.+|||+|+..+...... .++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~-~~~~~--~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG-NLDPA--KTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee-eeeEE--EEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 7999999999999999999998876544332211 11111 111112 345789999999998766555 8999999
Q ss_pred EEEECCCCC-CHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRF-SQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++++....- +.+. ..+...+....+ ...++++|.||+|....
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDE 126 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccc
Confidence 999998522 2232 344445554432 23679999999996654
No 245
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=2.2e-12 Score=117.51 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=83.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeEEEEEEEEe---------CCcEEE
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMHRTVLK---------DGQVVN 72 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~ 72 (240)
....++|+++|+.++|||||+++|++........ ...+.|.........|. .+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 3456899999999999999999998643321110 01233333333334441 156789
Q ss_pred EEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 73 VIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 73 l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++||||+.++...... ..+|++++|+++..++..+....++.+... ..|+++++||+|..
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 9999999987655443 889999999999988888888888777542 25789999999976
No 246
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.35 E-value=2.8e-11 Score=93.74 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------CCceE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------DEIHA 93 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------~~~~~ 93 (240)
+|+++|+.|+||||..+.|.+...+. .....+.|.......+.......+.+||.||...+...... ..+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 68999999999999999999876443 33345667766666665435568999999999987665311 99999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh-CCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC-CcEEEEe
Q 036363 94 ALVVFSVRSRFSQEEEATLHSLQTLF-GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD-NRCVLFD 171 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 171 (240)
+|||+|+...--..+...+..+.+.. ......++.+++.|+|.+.++ .-.+.... ....+...+...+ ..+..|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~--~r~~~~~~-~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED--EREEIFRD-IQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH--HHHHHHHH-HHHHHHHHHHHTT-TSEEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH--HHHHHHHH-HHHHHHHHhhhccccceEEEe
Confidence 99999998333444433333322221 122235688889999977542 22222221 1223444444333 2366666
Q ss_pred CCCcch
Q 036363 172 NKTKDA 177 (240)
Q Consensus 172 ~~~~~~ 177 (240)
..-.+.
T Consensus 157 TSI~D~ 162 (232)
T PF04670_consen 157 TSIWDE 162 (232)
T ss_dssp E-TTST
T ss_pred ccCcCc
Confidence 554443
No 247
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9e-12 Score=87.05 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE-eCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL-KDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
..++.++|.+.+|||||+.+.++....+.-.+..|...... .+.- .....+.+|||.|+....+.... ++++++|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvK--Tvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK--TVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEe--EeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 46899999999999999999999876444444444443332 1111 13347899999999987665544 9999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 96 VVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 96 ~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+++|.++.-+....+-+....+... ....++|+|.||||.
T Consensus 99 LmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDm 138 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDM 138 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCC
Confidence 9999997777766554444433332 234679999999993
No 248
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.34 E-value=2.4e-11 Score=106.77 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=72.0
Q ss_pred cCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------CCceEEE
Q 036363 26 GHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------DEIHAAL 95 (240)
Q Consensus 26 G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~~~~~~l 95 (240)
|.+|+|||||+|+++|.... .+ ...+.|.........+ ++..+.+|||||++++...... ..+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-VG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-ec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 89999999999999998642 22 2345666666556666 7778999999999887654211 5789999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|+++ ... .......+.+ ...|+++|+||+|...
T Consensus 78 ~VvDat~-ler-~l~l~~ql~~-----~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 78 NVVDASN-LER-NLYLTLQLLE-----LGIPMILALNLVDEAE 113 (591)
T ss_pred EEecCCc-chh-hHHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence 9999984 321 2222233322 1367999999999643
No 249
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.33 E-value=1.8e-12 Score=106.28 Aligned_cols=109 Identities=19% Similarity=0.173 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC---cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------- 88 (240)
..+|||+|.+|+|||||||+|.|...-..+....| +|.....+ ..+.-..+.+||.||..........
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y--~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY--PHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE--E-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC--CCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 38999999999999999999988543333333333 23333333 3334457899999998765432222
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
...|.||++.+ . +++..+....+.+... .+++++|-||+|.
T Consensus 113 ~~yD~fiii~s-~-rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISS-E-RFTENDVQLAKEIQRM-----GKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEES-S-S--HHHHHHHHHHHHT-----T-EEEEEE--HHH
T ss_pred cccCEEEEEeC-C-CCchhhHHHHHHHHHc-----CCcEEEEEecccc
Confidence 77787666543 3 8999998888888653 3679999999994
No 250
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.33 E-value=4.2e-12 Score=109.38 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=53.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL 65 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~ 65 (240)
+.++.+++|.+.+| .+|+|+|+||+|||||++.|+|...+.+|....+.+....|+.+.+
T Consensus 335 ~~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~ 394 (530)
T COG0488 335 RLLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR 394 (530)
T ss_pred ceeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehh
Confidence 57899999999999 9999999999999999999999887777777778888888888765
No 251
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.33 E-value=3.1e-12 Score=115.06 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=78.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCc--------------cccCCCCCcceeEEE----EEEEEeCCcEEEEEeCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEM----HRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~--------------~~~~~~~~~t~~~~~----~~~~~~~~~~~~l~DtpG~ 79 (240)
..++|+++|+.|+|||||+++|+..... .......+.|..... ....+ .+..+++|||||+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCc
Confidence 4589999999999999999999743111 000011233333222 12344 6778999999999
Q ss_pred CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.++...... ..+|++++|+|+..+........++.+... ..|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 987643333 899999999999877777777776665421 135679999999764
No 252
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8.8e-12 Score=103.34 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC-CCCCcC-----
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF-SAGSEF----- 88 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~~----- 88 (240)
..| ..|+|+|++++|||||+|+|+.......+. ..|+|.+.-...+.. ++.++.+.||.|+-.. ....+.
T Consensus 266 q~g--l~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 266 QSG--LQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred hcC--CeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHH
Confidence 445 899999999999999999999987644443 356777766666666 9999999999999872 221111
Q ss_pred -----CCceEEEEEEECCCCCCHHHHHHHHHHHHH---hC----CCcCCeEEEEEeCCCCCCC
Q 036363 89 -----DEIHAALVVFSVRSRFSQEEEATLHSLQTL---FG----KNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 -----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~---~~----~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|+....+.++....+.+... +. .....+++++.||.|...+
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 899999999999655555554444444332 11 1123678999999996544
No 253
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.9e-11 Score=102.69 Aligned_cols=121 Identities=19% Similarity=0.240 Sum_probs=98.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
.+.|.++|+-..|||||+..|-+....... ..+.|.....+.+.++ +...+.++||||+..|..++.. .-.|.+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~E--aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGE--AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCcccccc--CCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 379999999999999999999887764433 3678888888888774 3368999999999999888776 889999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHH
Q 036363 95 LVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLED 146 (240)
Q Consensus 95 l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~ 146 (240)
++|+++.+++-++..+.+..++. ...|+++.+||+|+....+..+..
T Consensus 83 ILVVa~dDGv~pQTiEAI~hak~-----a~vP~iVAiNKiDk~~~np~~v~~ 129 (509)
T COG0532 83 ILVVAADDGVMPQTIEAINHAKA-----AGVPIVVAINKIDKPEANPDKVKQ 129 (509)
T ss_pred EEEEEccCCcchhHHHHHHHHHH-----CCCCEEEEEecccCCCCCHHHHHH
Confidence 99999999999999999888864 236899999999988654333333
No 254
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.30 E-value=3e-12 Score=94.98 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----CCceEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----DEIHAA 94 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----~~~~~~ 94 (240)
..|+|+||+|+|||+|+..|.......+-.+. .... . .......+..+.++|+||+......... ..+-++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--A-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--E-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--e-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 68999999999999999999876433222211 1000 0 0000013457889999999876542211 678999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC----CCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRFSQEEEATLHSLQTLFG----KNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~i~v~~~~D~~~~ 139 (240)
+||+|.. ....+-....+.|...+. ....+|++++.||.|.+..
T Consensus 80 IfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 9999987 232222333334333332 2345889999999997654
No 255
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=5e-11 Score=106.18 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=42.0
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS 51 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~ 51 (240)
|++.++++++|.+.+| .+++|+|+||+|||||+++|+|...+.+|...
T Consensus 323 ~~~~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~ 370 (638)
T PRK10636 323 GDRIILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG 370 (638)
T ss_pred CCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 3457899999999999 99999999999999999999998876666543
No 256
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=95.62 Aligned_cols=116 Identities=17% Similarity=0.106 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE 90 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~ 90 (240)
..|++||-+++|||||+|+|+...+- .+.. ..+|.......+.+.+...+.|.|.||+......... ..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpk-Va~Y-aFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPK-VAHY-AFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCc-cccc-ceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 46899999999999999999987652 2222 3445555555555534445999999999988776655 88
Q ss_pred ceEEEEEEECCCC---CCHHHHHHHHHHHHHhC-CCcCCeEEEEEeCCCCC
Q 036363 91 IHAALVVFSVRSR---FSQEEEATLHSLQTLFG-KNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 91 ~~~~l~v~~~~~~---~~~~~~~~l~~l~~~~~-~~~~~~~i~v~~~~D~~ 137 (240)
+..++||+|++.. -..+..+.|..-.+.+. .-...|.++|.||+|..
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 9999999999854 22333333333333333 22346799999999943
No 257
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=93.48 Aligned_cols=116 Identities=24% Similarity=0.201 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|.+|+|||+|...+++..+.....++.. +.......+.- ....+.++||+|...+...... ...|++++|
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~-~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDG-EVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred eEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECC-EEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 7999999999999999999998876544333222 22222222211 2346679999997777766655 888999999
Q ss_pred EECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 98 FSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 98 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++++.|.++. ..+..+.+.-+. ...|+++|.||+|...
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLER 122 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchh
Confidence 999999888875 444455343333 3368999999999554
No 258
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.29 E-value=2.1e-11 Score=103.87 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeEEEEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (240)
+..+|+++|+.++|||||+-+|+...... ......+.|.........+ .+
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~ 84 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TK 84 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CC
Confidence 44899999999999999998886321100 0011246677777666766 78
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-CC------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-FS------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+.++++||||+.+|...... ..+|++++|+++..+ +. .+.++.+..+. .++ .+++++++||+|..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~g---i~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TLG---VKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-HcC---CCcEEEEEEcccCC
Confidence 89999999999988654444 899999999999853 21 23334333332 222 35689999999954
No 259
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.29 E-value=2.2e-11 Score=94.84 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=72.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcCCCceEEEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVV 97 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v 97 (240)
++..|+++|++|+|||||+|.|++...........+ +. . .... .+..+.++||||... ........+|++++|
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i--~--i~~~-~~~~i~~vDtPg~~~-~~l~~ak~aDvVllv 110 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI--T--VVTG-KKRRLTFIECPNDIN-AMIDIAKVADLVLLL 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE--E--EEec-CCceEEEEeCCchHH-HHHHHHHhcCEEEEE
Confidence 348999999999999999999987632111111111 11 1 1112 567889999998541 000111788999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+.......+...+..+... ..+.+++|+||+|.+.+
T Consensus 111 iDa~~~~~~~~~~i~~~l~~~----g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 111 IDASFGFEMETFEFLNILQVH----GFPRVMGVLTHLDLFKK 148 (225)
T ss_pred EecCcCCCHHHHHHHHHHHHc----CCCeEEEEEeccccCCc
Confidence 999877877777776666432 22445669999997643
No 260
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.3e-11 Score=97.61 Aligned_cols=139 Identities=20% Similarity=0.280 Sum_probs=95.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC---------------CCCCcceeEEEEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RA---------------SSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~ 68 (240)
+..+++++|+..+|||||+-.|+-...... +. ...|.|........+. +.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k 84 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK 84 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence 348999999999999999988864322100 00 0136777777777766 67
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..++++|+||+-+|-..... .++|+.++|+++..+ ...+.++- ..|...+| ...+|+++||+|...-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG---i~~lIVavNKMD~v~w 160 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG---IKQLIVAVNKMDLVSW 160 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC---CceEEEEEEccccccc
Confidence 78999999998888654444 889999999999854 33333333 23344445 4679999999998876
Q ss_pred CcccHHHHhcccCCchHHHHHHHhCCc
Q 036363 140 NDETLEDYLGRECPKPLKEILHLFDNR 166 (240)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (240)
+...+++.... +..++..++..
T Consensus 161 de~rf~ei~~~-----v~~l~k~~G~~ 182 (428)
T COG5256 161 DEERFEEIVSE-----VSKLLKMVGYN 182 (428)
T ss_pred CHHHHHHHHHH-----HHHHHHHcCCC
Confidence 65566665555 45566666644
No 261
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.25 E-value=7.5e-11 Score=97.28 Aligned_cols=116 Identities=22% Similarity=0.398 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccC-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRA-FKSRA-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
.++|++|.+-..|||||+..|+.+.. |.... ...|+|.-..-..+.| ++..++++||||+.+|..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc
Confidence 47999999999999999999987643 11111 1236666666666777 899999999999999998
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
..+. .-+|++++++|+.++.-++.+-.++...+. ..+ .|+|+||.|.-...
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~----gL~-PIVVvNKiDrp~Ar 136 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL----GLK-PIVVINKIDRPDAR 136 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc----CCC-cEEEEeCCCCCCCC
Confidence 8777 899999999999988888888777776642 223 58899999976553
No 262
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.24 E-value=2.4e-11 Score=100.96 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
+..++.|+|-+++|||||+|.++....-.. . -..+|...-..+..+ .-..+.++||||+.+......+
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevq-p-YaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-P-YAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccC-C-cccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 348999999999999999999886553111 1 122233322233333 4457889999999988766655
Q ss_pred --CCceEEEEEEECC--CCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 89 --DEIHAALVVFSVR--SRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 89 --~~~~~~l~v~~~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
.-..++||++|++ ++.|..+ ...++.++..|.. +++|+|+||+|.+.+.
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPE 297 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCcc
Confidence 6667899999998 5677665 6888899998876 6799999999987654
No 263
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.24 E-value=1.7e-10 Score=102.87 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=41.7
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS 51 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~ 51 (240)
+++.++++++|.+.+| .+++|+|+||+|||||+++|+|...+.+|...
T Consensus 330 ~~~~il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~ 377 (635)
T PRK11147 330 DGKQLVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377 (635)
T ss_pred CCeEEEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence 3456899999999999 99999999999999999999998766666443
No 264
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=5e-11 Score=83.91 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.+++++|+.|+|||-|+..+.....-.... ....+.....-+.+- +..++.+|||.|...|.+.... +++-+.++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdss--HTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSS--HTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhccccc--ceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 689999999999999999988654322211 211222211112220 2346789999999999887766 99999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+|++++-+.+.. .+|..++-+-+. ..-++++.||.| +.+
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs~--nIvviL~GnKkD-L~~ 128 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLASP--NIVVILCGNKKD-LDP 128 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCCC--cEEEEEeCChhh-cCh
Confidence 9999988888764 444444433222 123555689988 443
No 265
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.7e-11 Score=95.29 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=39.7
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
.++++++|++++| ..++|+||||+|||||+++|+|...+..|..
T Consensus 18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i 61 (254)
T COG1121 18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSGEI 61 (254)
T ss_pred eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence 5899999999999 9999999999999999999999776666543
No 266
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.23 E-value=4.2e-10 Score=92.60 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=76.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCC---cceeEEE---EEEEEeCC----cEEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSG---VTSTCEM---HRTVLKDG----QVVN 72 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~---~t~~~~~---~~~~~~~~----~~~~ 72 (240)
+....|+++|+.++|||||+|++++....+. -.+..| .|+...+ ........ .++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 3348999999999999999999999822111 011233 4444444 22333222 5789
Q ss_pred EEeCCCCCCCCCCCcC--------------------------------CCceEEEEEE-ECC------CCCCHHHHHHHH
Q 036363 73 VIDTPGLFDFSAGSEF--------------------------------DEIHAALVVF-SVR------SRFSQEEEATLH 113 (240)
Q Consensus 73 l~DtpG~~~~~~~~~~--------------------------------~~~~~~l~v~-~~~------~~~~~~~~~~l~ 113 (240)
++||+|+.+....-.. ...+..++|. |.+ ......+.+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999999875432211 3677888887 663 355666778888
Q ss_pred HHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 114 SLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 114 ~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.|++. ..|+++|+|+.|-.
T Consensus 175 eLk~~-----~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKEL-----NKPFIILLNSTHPY 193 (492)
T ss_pred HHHhc-----CCCEEEEEECcCCC
Confidence 88543 47899999999943
No 267
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.22 E-value=7.4e-11 Score=83.53 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC---CcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS---GVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
.+|+++|..-+|||||+-..+-..+.....++. ..+....... ..-.+.+|||.|...|...-.. ++.+++
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed----~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED----CRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc----ceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 799999999999999998877554322211110 1111111111 2236789999999998766555 999999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRD 135 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D 135 (240)
++|+|++++-+.+- +.++..++.++|.. ..+++|.||.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiD 129 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKID 129 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCccc
Confidence 99999998888775 67788888888865 45889999999
No 268
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.20 E-value=2.7e-11 Score=97.83 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
...++++++|++.+| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 17 ~~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~ 61 (293)
T COG1131 17 DKTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61 (293)
T ss_pred CCEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 468999999999999 999999999999999999999988765543
No 269
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.20 E-value=2.8e-11 Score=109.19 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=80.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeEEEEEEEE--e-CCcEEEEEeCCC
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMHRTVL--K-DGQVVNVIDTPG 78 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~--~-~~~~~~l~DtpG 78 (240)
....++|+++|+.++|||||+.+|+.......... ..+.|.........| . .+..++++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 34568999999999999999999975432211100 112333333333322 1 356789999999
Q ss_pred CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+.++...... ..+|++++|+|+..+...+....+..+... + .|.++++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 9997544333 889999999999988888888887775432 1 3468999999965
No 270
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.17 E-value=1.5e-10 Score=98.45 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=76.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeEEEEEEE---------------Ee------------
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMHRTV---------------LK------------ 66 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~---------------~~------------ 66 (240)
......+|+++|+-.+|||||+.+|+|.....- .....|.|....+.... .+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 344559999999999999999999998654211 11112333222221110 00
Q ss_pred -----CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 67 -----DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 67 -----~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
....+.++||||+.++...... ..+|++++|+++..+ ...+..+.+.. ...++- +++++++||+|...
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~lgi---~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAA-VEIMKL---KHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHH-HHHcCC---CcEEEEEecccccC
Confidence 0246889999998776433222 889999999999854 34544444433 333342 67899999999664
No 271
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.17 E-value=6.8e-11 Score=95.86 Aligned_cols=44 Identities=30% Similarity=0.285 Sum_probs=40.3
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS 51 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~ 51 (240)
+++++++.+..| ..++|+||||||||||+++|+|...+.+|...
T Consensus 18 ~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~ 61 (338)
T COG3839 18 VLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61 (338)
T ss_pred eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 789999999999 99999999999999999999999887776543
No 272
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.16 E-value=3.8e-11 Score=90.05 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=42.8
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
|...+++++++++.+| ..++++||+|||||||+++|.+...+.+|..
T Consensus 13 g~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~~G~I 59 (240)
T COG1126 13 GDKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59 (240)
T ss_pred CCeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCCCceE
Confidence 5678999999999999 9999999999999999999999988777654
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.16 E-value=1.1e-10 Score=104.92 Aligned_cols=109 Identities=26% Similarity=0.339 Sum_probs=78.2
Q ss_pred EcCCCCcHHHHHHHHhCCCCcccc---C-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC
Q 036363 25 VGHTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (240)
Q Consensus 25 vG~~g~GKSTlin~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (240)
+|+.++|||||+++|+........ . ...+.|.........| .+..+++|||||+.++......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHHHHHHHH
Confidence 699999999999999644321110 0 0135566666667777 8889999999999875433322
Q ss_pred --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|++.+........+..+... ..|+++|+||+|....
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 889999999999977777777666665431 2568899999996643
No 274
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.15 E-value=7.2e-10 Score=87.82 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=75.0
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF- 88 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~- 88 (240)
..|.+.....-+++|||++++|||||+|.|++...-.... ..+|.++...-..+ ++-.+.++|+||+....+....
T Consensus 54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y--~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~gr 130 (365)
T COG1163 54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADY--PFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGR 130 (365)
T ss_pred CcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcccccc--CceecccccceEee-cCceEEEEcCcccccCcccCCCC
Confidence 5677777777999999999999999999999976432222 23344444344455 8889999999999876655443
Q ss_pred --------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhC
Q 036363 89 --------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG 120 (240)
Q Consensus 89 --------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~ 120 (240)
+.+|.+++|+|+...... ...+..-.+..|
T Consensus 131 G~~vlsv~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~G 168 (365)
T COG1163 131 GRQVLSVARNADLIIIVLDVFEDPHH--RDIIERELEDVG 168 (365)
T ss_pred cceeeeeeccCCEEEEEEecCCChhH--HHHHHHHHHhcC
Confidence 999999999999843322 444444444444
No 275
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.15 E-value=6e-10 Score=88.91 Aligned_cols=117 Identities=20% Similarity=0.140 Sum_probs=77.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI 91 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~ 91 (240)
-|++||-+++|||||++.++...+-..... .+|.......+....+..+++.|.||+....+.-.- .++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYp--FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYP--FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCc--cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 478899999999999999998765433332 334333333333335667999999999887665443 788
Q ss_pred eEEEEEEECCC--CCC-HHHHHHHHHHHHHhC-CCcCCeEEEEEeCCCCCCC
Q 036363 92 HAALVVFSVRS--RFS-QEEEATLHSLQTLFG-KNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 92 ~~~l~v~~~~~--~~~-~~~~~~l~~l~~~~~-~~~~~~~i~v~~~~D~~~~ 139 (240)
-+++.|+|++. ..+ .++...+..=++.++ .-..+|.++|+||+|...+
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 88999999982 122 334333333223332 2334789999999995543
No 276
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.15 E-value=3.6e-11 Score=93.84 Aligned_cols=46 Identities=30% Similarity=0.412 Sum_probs=41.7
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+++.++++++|++++| ..++|+||||||||||+++|+|...+.+|.
T Consensus 13 ~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~ 58 (258)
T COG1120 13 GGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSGE 58 (258)
T ss_pred CCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCCE
Confidence 5678999999999999 999999999999999999999987766654
No 277
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=1e-10 Score=87.91 Aligned_cols=44 Identities=27% Similarity=0.344 Sum_probs=39.0
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (178)
T cd03229 12 QKTVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEPDSG 55 (178)
T ss_pred CeEEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 346889999999999 99999999999999999999998765544
No 278
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=1.3e-10 Score=86.92 Aligned_cols=43 Identities=30% Similarity=0.276 Sum_probs=38.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
..++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 13 ~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (173)
T cd03230 13 KTALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPDSG 55 (173)
T ss_pred eeeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 45889999999999 99999999999999999999998765444
No 279
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=8.7e-11 Score=90.29 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=41.6
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++..++++++|++.+| ..|+|+||+|||||||+|.|+|...+.+|.
T Consensus 14 ~~~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~G~ 59 (248)
T COG1116 14 GGVEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59 (248)
T ss_pred CceEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 4467899999999999 999999999999999999999998877664
No 280
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.5e-09 Score=95.41 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=41.8
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
|++.++++++|.+.+| .+++|+|+||||||||+++|+|...+.+|..
T Consensus 12 g~~~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I 58 (638)
T PRK10636 12 GVRVLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISADGGSY 58 (638)
T ss_pred CCceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 5678999999999999 9999999999999999999999876666543
No 281
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.13 E-value=3.1e-09 Score=94.97 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=41.1
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|.+.+| .+++|+|+||||||||+++|+|...+.+|.
T Consensus 14 ~~~~il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p~~G~ 59 (635)
T PRK11147 14 SDAPLLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLLDDGR 59 (635)
T ss_pred CCceeEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence 4567999999999999 999999999999999999999987665554
No 282
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.12 E-value=1.2e-10 Score=82.94 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.++.+||.+-+|||+|++.++....+.-..++.|....... ++...+ .++.+|||.|...|.+.... ++.-+++
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarl--ie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARL--IELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHH--HhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 78999999999999999999876654333322222211110 111122 36789999999999876655 7788899
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (240)
+|+|++++-+.+.. .+++...-..+.....-+.+|.+|+|......-+. +....+-..++..++.-+.+.
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~---------EEaEklAa~hgM~FVETSak~ 157 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTA---------EEAEKLAASHGMAFVETSAKN 157 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccH---------HHHHHHHHhcCceEEEecccC
Confidence 99999999998874 55666665555444455677899999543221111 223455566677666555443
No 283
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.10 E-value=2.1e-09 Score=83.54 Aligned_cols=116 Identities=20% Similarity=0.114 Sum_probs=75.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCC-cC-----
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGS-EF----- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~-~~----- 88 (240)
+...|+++|+.++|||||+|.|+|. ..+..+.....+|.........+. .+..+.++||||+.+..... ..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4579999999999999999999998 345555544566666555544431 24689999999999876644 22
Q ss_pred ----CCceEEEEEEECCCCCCHHHHHHHHHHHHH-----------hCCCcCCeEEEEEeCCC
Q 036363 89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTL-----------FGKNCFDYMIVVFSGRD 135 (240)
Q Consensus 89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~-----------~~~~~~~~~i~v~~~~D 135 (240)
.-.++++|..+.. ....+...+..+.+. ......+.++.|+-.++
T Consensus 86 ~l~~llss~~i~n~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~ 145 (224)
T cd01851 86 ALATLLSSVLIYNSWET--ILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFS 145 (224)
T ss_pred HHHHHHhCEEEEeccCc--ccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCc
Confidence 3477788776664 344444444444331 12334466677766555
No 284
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.10 E-value=1.9e-10 Score=85.93 Aligned_cols=112 Identities=20% Similarity=0.126 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.++++||..++|||.|+-+.+...++....++...+. ...+...++. .+.+|||.|..+++..+.. +..|+|+
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny---s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY---SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc---eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 7899999999999999988876654433322111111 1122331143 4679999999999875544 9999999
Q ss_pred EEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 96 VVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 96 ~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+++++.++.+.++ .+++..+...++. .|+|+|.+|.|+-
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR 122 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence 9999998888775 5777788877644 6799999999944
No 285
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=1.2e-10 Score=89.00 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..+++|++|++..| .+|+|||+||||||||++.|+|...|.+|.
T Consensus 40 ~~aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~ 83 (249)
T COG1134 40 FWALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83 (249)
T ss_pred EEEecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCCCce
Confidence 45789999999999 999999999999999999999998877654
No 286
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.7e-10 Score=81.89 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=83.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
.....+|+++|-.+|||||++..+--.....+ ..|.......+.+ .+..+.+||.-|.......+.. ...++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcccccchhhhccCCcE
Confidence 34458999999999999999988765544333 2344445555666 7889999999999888887777 99999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|||+|.+++....+ ++.+..+...- .-...|+++..||.|...
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~-~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEP-ELRNAPLLVFANKQDLPG 132 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCc-ccCCceEEEEechhhccc
Confidence 999999997655544 33443333221 113467888899999443
No 287
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.8e-09 Score=91.53 Aligned_cols=145 Identities=21% Similarity=0.262 Sum_probs=97.6
Q ss_pred cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeEEEE
Q 036363 11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMH 61 (240)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~ 61 (240)
+....+.....++++|+..+|||||+..|+-....... ....|.|......
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 33444556689999999999999999988744321110 0123666666655
Q ss_pred EEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC-C----CCCHH-HHHHHHHHHHHhCCCcCCeEEEEEeC
Q 036363 62 RTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR-S----RFSQE-EEATLHSLQTLFGKNCFDYMIVVFSG 133 (240)
Q Consensus 62 ~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~-~----~~~~~-~~~~l~~l~~~~~~~~~~~~i~v~~~ 133 (240)
.++. ....++++|+||+-+|...... ..+|+.++|+|++ + ++... ..+....+...+| ...+++++||
T Consensus 249 ~fes-~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg---i~qlivaiNK 324 (603)
T KOG0458|consen 249 WFES-KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG---ISQLIVAINK 324 (603)
T ss_pred EEec-CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---cceEEEEeec
Confidence 5655 7778999999999998776555 8899999999987 2 22211 1233344455555 3679999999
Q ss_pred CCCCCCCcccHHHHhcccCCchHHHHH-HHhC
Q 036363 134 RDELEANDETLEDYLGRECPKPLKEIL-HLFD 164 (240)
Q Consensus 134 ~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 164 (240)
+|.+.-....+++.... +..++ +.|+
T Consensus 325 mD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 325 MDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred ccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 99887765566665555 55555 5555
No 288
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=6.7e-10 Score=93.81 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=85.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~l 95 (240)
++..++++||+|+||||||++|.....-. -.....++|+... ..+.++++.+| .+.....+. .-+|.+|
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg-------K~RRiTflEcp--~Dl~~miDvaKIaDLVl 138 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG-------KTRRITFLECP--SDLHQMIDVAKIADLVL 138 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec-------ceeEEEEEeCh--HHHHHHHhHHHhhheeE
Confidence 34888999999999999999997643211 1222233333222 56688999999 332222222 6788899
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHH
Q 036363 96 VVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEIL 160 (240)
Q Consensus 96 ~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
++++.+-++..+...+|..+. ....|.++-|+||.|.+... ..+....+......|.++.
T Consensus 139 LlIdgnfGfEMETmEFLnil~----~HGmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiy 198 (1077)
T COG5192 139 LLIDGNFGFEMETMEFLNILI----SHGMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIY 198 (1077)
T ss_pred EEeccccCceehHHHHHHHHh----hcCCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHc
Confidence 999999888888888888776 44568899999999977543 3555544443334444443
No 289
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.07 E-value=1.5e-10 Score=94.27 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=40.7
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 4 ~~~~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~ 49 (302)
T TIGR01188 4 GDFKAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRPTSGT 49 (302)
T ss_pred CCeeEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 4567899999999999 999999999999999999999987665553
No 290
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.07 E-value=8.4e-11 Score=85.60 Aligned_cols=61 Identities=36% Similarity=0.477 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CC--cceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
..++|+|++|+|||||+|.|++......+... .| +|.....+ .+ .....|+||||+.++..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~--~l--~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELF--PL--PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEE--EE--TTSEEEECSHHHHT--G
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEE--ec--CCCcEEEECCCCCcccc
Confidence 79999999999999999999998544433221 11 22222222 22 23467999999998743
No 291
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.07 E-value=3e-10 Score=92.56 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=40.4
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 18 ~~~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~ 63 (306)
T PRK13537 18 GDKLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63 (306)
T ss_pred CCeEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 3456899999999999 899999999999999999999987766553
No 292
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.06 E-value=4.5e-10 Score=89.31 Aligned_cols=78 Identities=21% Similarity=0.145 Sum_probs=55.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC----------------cEEEEEeCCCCCCCCCC
Q 036363 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG----------------QVVNVIDTPGLFDFSAG 85 (240)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~ 85 (240)
|+|||.+++|||||+|+|++.....+.. +++|.........+++. ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~--pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY--PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc--cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5899999999999999999987532222 44554544444444221 14889999999865443
Q ss_pred CcC---------CCceEEEEEEECC
Q 036363 86 SEF---------DEIHAALVVFSVR 101 (240)
Q Consensus 86 ~~~---------~~~~~~l~v~~~~ 101 (240)
... +.+|++++|+++.
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 222 7899999999874
No 293
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=3e-10 Score=84.81 Aligned_cols=42 Identities=29% Similarity=0.302 Sum_probs=38.4
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
.++++++|.+++| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 16 ~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~~G 57 (171)
T cd03228 16 PVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPTSG 57 (171)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 6899999999999 99999999999999999999998765554
No 294
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.06 E-value=6.5e-10 Score=85.22 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=39.4
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 12 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (201)
T cd03231 12 GRALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPPLAG 55 (201)
T ss_pred CceeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456889999999999 99999999999999999999998765554
No 295
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.06 E-value=3.1e-10 Score=84.89 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=38.9
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 15 ~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~ 58 (173)
T cd03246 15 PPVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGR 58 (173)
T ss_pred CcceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 35899999999999 999999999999999999999987655543
No 296
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.06 E-value=3.1e-10 Score=93.58 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=40.7
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 52 ~~~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~ 97 (340)
T PRK13536 52 GDKAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSPDAGK 97 (340)
T ss_pred CCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCceE
Confidence 4456899999999999 999999999999999999999987666553
No 297
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.06 E-value=4.8e-10 Score=82.51 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (240)
..+|+++|.+|+|||||+|+|++......+.. .+.|....... .+..++++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEE----cCCCEEEEECcCC
Confidence 37899999999999999999999766554443 34454433222 2345889999995
No 298
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.05 E-value=7.4e-10 Score=82.25 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=39.2
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 14 ~~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (166)
T cd03223 14 RVLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSGR 57 (166)
T ss_pred CeeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 46889999999999 999999999999999999999987655543
No 299
>PTZ00258 GTP-binding protein; Provisional
Probab=99.05 E-value=8.9e-10 Score=91.48 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC----------------CcEEEEEeCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD----------------GQVVNVIDTPGLFD 81 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~ 81 (240)
...+|+|||.+++|||||+|+|++.....+.. +++|.......+.+++ ...+.++||||+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~--pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENF--PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCC--CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 34799999999999999999998876432222 4556555555554421 12488999999986
Q ss_pred CCCCCcC---------CCceEEEEEEECC
Q 036363 82 FSAGSEF---------DEIHAALVVFSVR 101 (240)
Q Consensus 82 ~~~~~~~---------~~~~~~l~v~~~~ 101 (240)
....... +.+|++++|+++.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 5443222 8899999999984
No 300
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.05 E-value=1.6e-09 Score=75.48 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=81.1
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--C
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--D 89 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~ 89 (240)
+..++++..+|+++|-.++|||||++.|.+..+..-- .|.........+.+...+++||..|.-....-+.+ .
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hlt-----pT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYye 84 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-----PTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYE 84 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhcc-----ccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhh
Confidence 4455677799999999999999999999988753221 12222333344424568999999999888887777 8
Q ss_pred CceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.+|++|||+|.++.-..++ ...+-.+.+.- +-...|+.+..|+-|.+..
T Consensus 85 nvd~lIyVIDS~D~krfeE~~~el~ELleee-Kl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 85 NVDGLIYVIDSTDEKRFEEISEELVELLEEE-KLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ccceEEEEEeCCchHhHHHHHHHHHHHhhhh-hhhccceeehhhhhHHHhh
Confidence 9999999999775433332 12222222211 1123567777888886644
No 301
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.04 E-value=5.5e-10 Score=85.17 Aligned_cols=47 Identities=28% Similarity=0.370 Sum_probs=43.4
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
|++.++++++|++++| ...+++|++|+|||||++.|+|...+..|..
T Consensus 19 G~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 19 GDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred CCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 6788999999999999 9999999999999999999999988877654
No 302
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.04 E-value=4.4e-10 Score=88.09 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 56 (232)
T cd03218 12 KRKVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56 (232)
T ss_pred CEEeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 456899999999999 999999999999999999999987665543
No 303
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=6e-10 Score=86.18 Aligned_cols=45 Identities=29% Similarity=0.299 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 12 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 56 (213)
T cd03259 12 SVRALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERPDSGE 56 (213)
T ss_pred CeeeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 356899999999999 999999999999999999999987655543
No 304
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.04 E-value=3.6e-10 Score=86.59 Aligned_cols=43 Identities=28% Similarity=0.276 Sum_probs=39.4
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|.+++| ..|+|+||+|||||||+|.|.|...+.++.
T Consensus 19 ~~L~~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~pt~G~ 61 (226)
T COG1136 19 EALKDVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61 (226)
T ss_pred EecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 5889999999999 999999999999999999999988776654
No 305
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.4e-10 Score=94.68 Aligned_cols=46 Identities=33% Similarity=0.329 Sum_probs=41.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
|++++.+++|++++| ..+++||++|+|||||++.|+|...+..|..
T Consensus 333 g~~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I 378 (559)
T COG4988 333 GKPALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378 (559)
T ss_pred CCcccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 458899999999999 9999999999999999999999887666554
No 306
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.03 E-value=1.3e-10 Score=83.87 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=41.0
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++..++++++|.+.+| ..|++.||+|||||||++.++....+.+|.
T Consensus 14 ~~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp~~G~ 59 (223)
T COG4619 14 GDAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISPTSGT 59 (223)
T ss_pred CCCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCCCCce
Confidence 4567899999999999 999999999999999999999887766654
No 307
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.03 E-value=2.3e-10 Score=80.09 Aligned_cols=114 Identities=18% Similarity=0.095 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
..+.++|--.+|||||.|.++..... .. .+.|+......+.- +...+.+||.||...|...++. +++++++|+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~-ed---miptvGfnmrk~tk-gnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL-ED---MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch-hh---hcccccceeEEecc-CceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 68899999999999999988754332 22 22344444444444 5668899999999999998887 999999999
Q ss_pred EECCCCCC-HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 98 FSVRSRFS-QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 98 ~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+.++-. ...+..++.+...- .-...|++++.||.|.-..
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~-~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKP-SLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred eecCCcccchhhHHHHHHHhcch-hhcCCcEEEecccccCccc
Confidence 99984322 22345555554321 2223679999999995443
No 308
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.02 E-value=9.2e-10 Score=85.14 Aligned_cols=44 Identities=32% Similarity=0.329 Sum_probs=39.4
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 12 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 12 NVTALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred CeeeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456899999999999 99999999999999999999998765554
No 309
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.02 E-value=7.3e-10 Score=86.14 Aligned_cols=44 Identities=27% Similarity=0.301 Sum_probs=39.6
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 15 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 58 (220)
T cd03263 15 KPAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58 (220)
T ss_pred ceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 56899999999999 999999999999999999999987665553
No 310
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.02 E-value=1.6e-09 Score=89.06 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC----------------cEEEEEeCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG----------------QVVNVIDTPGLFDFS 83 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~ 83 (240)
.+|+|||.+++|||||+|+|++.....+.. +++|.........+++. ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny--pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY--PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc--ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 589999999999999999999987422222 34454444433333121 248899999998654
Q ss_pred CCCcC---------CCceEEEEEEECC
Q 036363 84 AGSEF---------DEIHAALVVFSVR 101 (240)
Q Consensus 84 ~~~~~---------~~~~~~l~v~~~~ 101 (240)
..... +.+|++++|+++.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 33221 8999999999985
No 311
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.01 E-value=1.6e-09 Score=83.90 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 23 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 67 (214)
T PRK13543 23 EEPVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHVESGQ 67 (214)
T ss_pred CceeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCee
Confidence 456899999999999 999999999999999999999987655553
No 312
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.01 E-value=6.6e-10 Score=86.28 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=39.5
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+.++++++|++++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 17 ~~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 60 (218)
T cd03255 17 VQALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60 (218)
T ss_pred eeEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCCCcee
Confidence 56899999999999 999999999999999999999987665543
No 313
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2e-09 Score=92.72 Aligned_cols=126 Identities=20% Similarity=0.254 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-----------------------------------------cceeE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG-----------------------------------------VTSTC 58 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-----------------------------------------~t~~~ 58 (240)
-+|++.|.+.+||||++|+++-....+++..+.. .....
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence 6999999999999999999997766555543210 00011
Q ss_pred EEEEEEEeCC------cEEEEEeCCCCCCCCCCCcC-----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeE
Q 036363 59 EMHRTVLKDG------QVVNVIDTPGLFDFSAGSEF-----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYM 127 (240)
Q Consensus 59 ~~~~~~~~~~------~~~~l~DtpG~~~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 127 (240)
....+.|+++ ..+.++|.||+.-......+ ..+|++++|+.+.+.++..++.++....+. +|++
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-----Kpni 264 (749)
T KOG0448|consen 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-----KPNI 264 (749)
T ss_pred eEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-----CCcE
Confidence 1122334332 26789999999876655554 899999999999989999999998888532 6889
Q ss_pred EEEEeCCCCCCCCcccHHHHhcc
Q 036363 128 IVVFSGRDELEANDETLEDYLGR 150 (240)
Q Consensus 128 i~v~~~~D~~~~~~~~~~~~~~~ 150 (240)
+++.||||...+.++-.++.+.+
T Consensus 265 FIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 265 FILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred EEEechhhhhcccHHHHHHHHHH
Confidence 99999999776654444444443
No 314
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.01 E-value=1e-09 Score=87.20 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 24 ~~~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~ 68 (257)
T PRK11247 24 ERTVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETPSAGE 68 (257)
T ss_pred CcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 456899999999999 999999999999999999999987655543
No 315
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=4.8e-10 Score=88.05 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~ 56 (235)
T cd03261 12 GRTVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSGE 56 (235)
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 356899999999999 999999999999999999999987665543
No 316
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.01 E-value=1.2e-09 Score=83.57 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=39.4
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 12 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 12 ERMLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 456889999999999 99999999999999999999998765554
No 317
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=6.6e-10 Score=86.41 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=39.7
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 11 ~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 11 GDFEAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred CCEEeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3456899999999999 99999999999999999999998765554
No 318
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1.4e-09 Score=83.40 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
+..++++++|.+++| ..++|+|+||+|||||++.|+|...
T Consensus 19 ~~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 19 KIPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCC
Confidence 457899999999999 9999999999999999999999865
No 319
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.01 E-value=1.4e-09 Score=85.45 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
...++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 33 ~~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~ 77 (236)
T cd03267 33 EVEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQPTSGE 77 (236)
T ss_pred CeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 456899999999999 999999999999999999999987655543
No 320
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.01 E-value=8.8e-10 Score=89.79 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=40.2
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++..++++++|++++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 15 ~~~~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~ 60 (303)
T TIGR01288 15 GDKVVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISPDRGK 60 (303)
T ss_pred CCeEEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3456899999999999 999999999999999999999987655543
No 321
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=6.8e-10 Score=85.71 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=39.4
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 12 ~~~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (210)
T cd03269 12 RVTALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILPDSGE 56 (210)
T ss_pred CEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 456889999999999 999999999999999999999987655543
No 322
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.01 E-value=5.4e-10 Score=90.93 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=40.5
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|.+++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 13 ~~~~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~ 58 (301)
T TIGR03522 13 GTQNALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58 (301)
T ss_pred CCEEEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3456899999999999 999999999999999999999987666553
No 323
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.00 E-value=1e-09 Score=84.38 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 13 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~ 57 (204)
T PRK13538 13 ERILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARPDAGE 57 (204)
T ss_pred CEEEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 456889999999999 999999999999999999999987665553
No 324
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.00 E-value=1.4e-09 Score=82.87 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=38.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC--Ccccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR--AFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~--~~~~~ 48 (240)
..++++++|++.+| ..++|+|+||+|||||++.|+|.. .+.+|
T Consensus 22 ~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G 66 (194)
T cd03213 22 KQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66 (194)
T ss_pred ccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence 57999999999999 999999999999999999999987 54444
No 325
>PRK10908 cell division protein FtsE; Provisional
Probab=99.00 E-value=8.2e-10 Score=85.99 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 14 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 58 (222)
T PRK10908 14 GRQALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERPSAGK 58 (222)
T ss_pred CCeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 356899999999999 999999999999999999999987655553
No 326
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=6e-11 Score=85.74 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+++++|..++||||+|.+.+...+........+......-..+.. .+..+.+|||.|...++..... +++.+.++
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhH-HHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 47999999999999999999996654222222222221111011111 2346679999999998776544 99999999
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|++.+++.+.+. ..+-..+....+. .|+++|-||+|.++.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED 139 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh
Confidence 999998888876 3455556555444 689999999997654
No 327
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.00 E-value=5.9e-10 Score=82.52 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=39.1
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|.+.+| ..++|+|+||+|||||++.|+|...+.++
T Consensus 12 ~~~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (163)
T cd03216 12 GVKALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKPDSG 55 (163)
T ss_pred CeEEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 446889999999999 99999999999999999999998765444
No 328
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.00 E-value=8.2e-10 Score=85.50 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=39.6
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 14 ~~~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 58 (214)
T TIGR02673 14 GVAALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTPSRGQ 58 (214)
T ss_pred CceeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 356899999999999 999999999999999999999987655543
No 329
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.8e-09 Score=91.53 Aligned_cols=117 Identities=22% Similarity=0.278 Sum_probs=83.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC---------------CCCcceeEEEEEEEEe----CCcEEEEEeC
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS---------------SSGVTSTCEMHRTVLK----DGQVVNVIDT 76 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~---------------~~~~t~~~~~~~~~~~----~~~~~~l~Dt 76 (240)
+...++|+++|+-++|||+|+..|.+..-+..... ..+++........... ..+.++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34568999999999999999999987654322110 1133332222222221 2457789999
Q ss_pred CCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 77 PGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 77 pG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
||+.+|...... ..+|++++|+|+.++......+.++...+. ..++++|+||.|.+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence 999999876655 899999999999988888877777776432 25799999999965
No 330
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.00 E-value=3.2e-10 Score=87.16 Aligned_cols=47 Identities=30% Similarity=0.333 Sum_probs=41.4
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
++..+.+++||+++.| ..++++|++||||||++++|.....+.+|..
T Consensus 12 ~~~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiept~G~I 58 (309)
T COG1125 12 GNKKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58 (309)
T ss_pred CCceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCCCCceE
Confidence 4678899999999999 9999999999999999999998877666543
No 331
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.00 E-value=8.6e-10 Score=85.63 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=38.8
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 19 ~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 61 (218)
T cd03266 19 QAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61 (218)
T ss_pred eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence 6899999999999 999999999999999999999987655543
No 332
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=2.4e-09 Score=85.13 Aligned_cols=45 Identities=29% Similarity=0.396 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 13 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 57 (255)
T PRK11248 13 GKPALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPYQHGS 57 (255)
T ss_pred CeeeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 456889999999999 999999999999999999999987665543
No 333
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.99 E-value=2.8e-08 Score=77.16 Aligned_cols=70 Identities=20% Similarity=0.104 Sum_probs=42.2
Q ss_pred cEEEEEeCCCCCCCCCCCcC----------CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF----------DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~----------~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+.++||||+....+=... ..+-+++||+|....-++.. ...+-.....+-. ..-|+++++||.|..
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-tklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK-TKLPFIVVFNKTDVS 194 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh-ccCCeEEEEeccccc
Confidence 35789999998653211111 78889999998863333332 2222222333322 236799999999965
Q ss_pred CC
Q 036363 138 EA 139 (240)
Q Consensus 138 ~~ 139 (240)
..
T Consensus 195 d~ 196 (366)
T KOG1532|consen 195 DS 196 (366)
T ss_pred cc
Confidence 54
No 334
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.4e-09 Score=87.10 Aligned_cols=148 Identities=20% Similarity=0.348 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh--CCCCccccCC------------------CCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSIL--GRRAFKSRAS------------------SSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~--g~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (240)
++.+||-++.+|||||-..|+ |......|.. ..|++++...-...+ .++.++++||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTPGH 91 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTPGH 91 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCCCc
Confidence 899999999999999997765 2222111111 125556666666666 8999999999999
Q ss_pred CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCccc----HHHHhcccC-
Q 036363 80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDET----LEDYLGREC- 152 (240)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~----~~~~~~~~~- 152 (240)
.||...... ..+|+++.|+|+..++.+...+.++-.+- . ..|++-.+||+|.-..++.. +++.+.-.+
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl----R-~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL----R-DIPIFTFINKLDREGRDPLELLDEIEEELGIQCA 166 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh----c-CCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence 999766555 88999999999998888888777766542 1 25789999999976443222 233333211
Q ss_pred --------CchHHHHHHHhCCcEEEEeCC
Q 036363 153 --------PKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~ 173 (240)
...++++.+.....++.|...
T Consensus 167 PitWPIG~gk~F~Gvy~l~~~~v~~y~~~ 195 (528)
T COG4108 167 PITWPIGMGKDFKGVYHLYNDEVELYESG 195 (528)
T ss_pred cccccccCCcccceeeeeccCEEEEeccC
Confidence 245577777777777777765
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.99 E-value=2e-09 Score=78.03 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.++
T Consensus 12 ~~~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (144)
T cd03221 12 GKLLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDEG 55 (144)
T ss_pred CceEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence 346889999999999 99999999999999999999998765443
No 336
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.98 E-value=1e-09 Score=84.57 Aligned_cols=44 Identities=30% Similarity=0.326 Sum_probs=39.4
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (208)
T cd03268 12 KKRVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKPDSG 55 (208)
T ss_pred CeEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 456899999999999 99999999999999999999998765554
No 337
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.98 E-value=6.1e-10 Score=87.18 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (230)
T TIGR03410 12 QSHILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPVKSGS 56 (230)
T ss_pred CeEEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 456899999999999 999999999999999999999987665553
No 338
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.5e-09 Score=84.34 Aligned_cols=43 Identities=30% Similarity=0.280 Sum_probs=38.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 17 VTALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred eEEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 46899999999999 99999999999999999999998765554
No 339
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.98 E-value=7.9e-10 Score=85.72 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=38.6
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+.++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 16 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 16 QPALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred eeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 35899999999999 99999999999999999999998765554
No 340
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=1.6e-09 Score=86.75 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=39.6
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
...++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 36 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~ 80 (269)
T cd03294 36 QTVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80 (269)
T ss_pred CceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 455789999999999 999999999999999999999987665543
No 341
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.98 E-value=7.2e-10 Score=86.29 Aligned_cols=44 Identities=32% Similarity=0.403 Sum_probs=39.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 12 KSQILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred CeeEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456889999999999 99999999999999999999998765554
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.97 E-value=2.2e-09 Score=77.54 Aligned_cols=57 Identities=30% Similarity=0.449 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (240)
.+++++|.+|+|||||+|+|++........ ..+.|..... ... + ..++++||||+..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~--~~~-~-~~~~i~DtpG~~~ 140 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQT--IFL-T-PTITLCDCPGLVF 140 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEE--EEe-C-CCEEEEECCCcCC
Confidence 389999999999999999999987543322 2344443332 223 2 3679999999864
No 343
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.97 E-value=1e-09 Score=84.87 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 12 ~~~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (213)
T cd03262 12 DFHVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEPDSGT 56 (213)
T ss_pred CeEeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 456889999999999 999999999999999999999987655543
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.97 E-value=1.4e-09 Score=81.00 Aligned_cols=55 Identities=36% Similarity=0.485 Sum_probs=41.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (240)
.+++++|.+|+|||||+|+|+|......+.. .|+|....... + +..+.++||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~--~--~~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH--L--DKKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE--e--CCCEEEEECcCC
Confidence 6999999999999999999999876555443 45555444332 2 346889999996
No 345
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.97 E-value=1.1e-09 Score=83.93 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=36.0
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+..++++++|.+.+| ..++|+|+||+|||||++.|+|..
T Consensus 12 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 12 GKEILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CEEeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence 346889999999999 999999999999999999999973
No 346
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.97 E-value=6.4e-10 Score=84.98 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=53.4
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (240)
|...+.++++|.+++| ...+++|+|||||||++++|+|...+.++...... ....... .++..+++...|++.
T Consensus 13 g~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g----~~~~~~~-~~rIGyLPEERGLy~ 85 (300)
T COG4152 13 GDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG----GPLSQEI-KNRIGYLPEERGLYP 85 (300)
T ss_pred CceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCccCceEEEcC----cchhhhh-hhhcccChhhhccCc
Confidence 5678899999999999 99999999999999999999998776555431110 0001111 233445666666665
Q ss_pred CCCC
Q 036363 82 FSAG 85 (240)
Q Consensus 82 ~~~~ 85 (240)
..+.
T Consensus 86 k~tv 89 (300)
T COG4152 86 KMTV 89 (300)
T ss_pred cCcH
Confidence 5544
No 347
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.97 E-value=6.5e-10 Score=87.75 Aligned_cols=45 Identities=24% Similarity=0.190 Sum_probs=40.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
..++++++|.++.| ..+++||.+|+|||||++.|-+...|.+|..
T Consensus 19 ~~al~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v 63 (339)
T COG1135 19 VTALDDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 (339)
T ss_pred eeeeccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence 46889999999999 9999999999999999999999888777654
No 348
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.95 E-value=7e-10 Score=83.37 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=38.2
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
.++++++|++++| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (178)
T cd03247 16 QVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQG 57 (178)
T ss_pred cceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 5899999999999 99999999999999999999998765554
No 349
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.5e-09 Score=89.44 Aligned_cols=153 Identities=19% Similarity=0.288 Sum_probs=113.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccC----------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA----------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (240)
...++|+++.+..+||||+-..++-........ ...++|.......+.| .+..+++|||||+.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCce
Confidence 455899999999999999999887544322111 1236677777777788 78999999999999
Q ss_pred CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcc-cHHH---Hhccc---
Q 036363 81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDE-TLED---YLGRE--- 151 (240)
Q Consensus 81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~-~~~~---~~~~~--- 151 (240)
+|.-.... +-.|+.++|+++..+...+....++.+... ..|.+..+||+|.+....- .++. .++..
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-----NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc-----CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99776655 888999999988878888888888888643 2568899999999876532 2222 11110
Q ss_pred ------CCchHHHHHHHhCCcEEEEeCCCc
Q 036363 152 ------CPKPLKEILHLFDNRCVLFDNKTK 175 (240)
Q Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~~~~ 175 (240)
....++++++...++...|+....
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g 220 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGENG 220 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCCC
Confidence 135679999999999999986644
No 350
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=4.8e-09 Score=72.98 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=81.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+.+|+.+|-.++||||++.-|.-.... . ...|+......+.+ .+..+++||..|.......+.. .+..++|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~----~ipTvGFnvetVty-kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-T----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-c----cccccceeEEEEEe-eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 3489999999999999999888654321 1 22344455555666 7889999999999988887777 8999999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCc--CCeEEEEEeCCCCCCCC-cccHHHHhc
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNC--FDYMIVVFSGRDELEAN-DETLEDYLG 149 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~--~~~~i~v~~~~D~~~~~-~~~~~~~~~ 149 (240)
||+|..++-..++ +..+..+. +... ..+++++.||-|.-... +.++.+++.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii---~~~em~~~~~LvlANkQDlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRII---NDREMRDAIILILANKQDLPDAMKPQEIQDKLE 144 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHh---CCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence 9999875533332 34444433 3221 13566778999954332 234444443
No 351
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.94 E-value=1.4e-09 Score=82.07 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=37.2
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (182)
T cd03215 15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASG 55 (182)
T ss_pred eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 578999999999 99999999999999999999998766554
No 352
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.5e-07 Score=76.04 Aligned_cols=116 Identities=20% Similarity=0.305 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEE------------EEe---------------------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRT------------VLK--------------------- 66 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------------~~~--------------------- 66 (240)
.-|+++|+-..||||+|+-|+....+.....+-++|-....... ...
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 68999999999999999999988765322222111211110000 000
Q ss_pred ---C---CcEEEEEeCCCCCCCCCCCcC-------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCe
Q 036363 67 ---D---GQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDY 126 (240)
Q Consensus 67 ---~---~~~~~l~DtpG~~~~~~~~~~-------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~ 126 (240)
. -..++++||||+.+....... ..+|.+++++|+. -..+.+-.+.+..++ |.+ ..
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E--dk 213 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHE--DK 213 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCc--ce
Confidence 0 026899999999877655322 8999999999997 345556577777775 222 45
Q ss_pred EEEEEeCCCCCCCC
Q 036363 127 MIVVFSGRDELEAN 140 (240)
Q Consensus 127 ~i~v~~~~D~~~~~ 140 (240)
+=+|+||+|.++..
T Consensus 214 iRVVLNKADqVdtq 227 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQ 227 (532)
T ss_pred eEEEeccccccCHH
Confidence 77999999988763
No 353
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=1.5e-09 Score=83.83 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=37.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|.+.+| .++|+|+||+|||||+++|+|...+.+|.
T Consensus 12 ~~~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 55 (211)
T cd03264 12 KKRALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGT 55 (211)
T ss_pred CEEEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence 346889999999996 89999999999999999999987655543
No 354
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=5.5e-09 Score=82.48 Aligned_cols=48 Identities=29% Similarity=0.284 Sum_probs=42.0
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS 51 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~ 51 (240)
|....++++++.+++| ..++++||||||||||++.|+|...+..|...
T Consensus 13 ~~~~a~~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~ 60 (345)
T COG1118 13 GAFGALDDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60 (345)
T ss_pred ccccccccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence 3456778999999999 99999999999999999999999887776543
No 355
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=1.5e-10 Score=88.50 Aligned_cols=46 Identities=30% Similarity=0.331 Sum_probs=42.0
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
||-.+.++++|++.+| ..+++|||||+|||||+|.|+|...+.++.
T Consensus 15 GGl~Al~~Vsl~v~~G--ei~~LIGPNGAGKTTlfNlitG~~~P~~G~ 60 (250)
T COG0411 15 GGLTAVNDVSLEVRPG--EIVGLIGPNGAGKTTLFNLITGFYKPSSGT 60 (250)
T ss_pred CCEEEEeceeEEEcCC--eEEEEECCCCCCceeeeeeecccccCCCce
Confidence 6778899999999999 999999999999999999999988776654
No 356
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.93 E-value=1e-08 Score=78.57 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=41.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+++.+++++++++++| .+-+|+|+||||||||++.++|..++.++
T Consensus 42 ~gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~pssg 86 (257)
T COG1119 42 NGKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86 (257)
T ss_pred CCEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 5788999999999999 99999999999999999999999876544
No 357
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.93 E-value=1e-08 Score=85.96 Aligned_cols=80 Identities=21% Similarity=0.076 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE--------------------eC---CcEEEEEeC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL--------------------KD---GQVVNVIDT 76 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~l~Dt 76 (240)
.+|+|||.+++|||||+|+|++.....+.. .++|.......... .+ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y--~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANY--PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCC--CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 589999999999999999999876432222 23333333222110 01 135789999
Q ss_pred CCCCCCCCCCcC---------CCceEEEEEEECC
Q 036363 77 PGLFDFSAGSEF---------DEIHAALVVFSVR 101 (240)
Q Consensus 77 pG~~~~~~~~~~---------~~~~~~l~v~~~~ 101 (240)
||+......... +.+|++++|+++.
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 999754332221 8999999999996
No 358
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=2.1e-09 Score=89.21 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 16 ~~~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p~~G~ 60 (356)
T PRK11650 16 KTQVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERITSGE 60 (356)
T ss_pred CCEEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence 456889999999999 899999999999999999999987766553
No 359
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.2e-09 Score=77.51 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--------CcEEEEEeCCCCCCCCCCCcC--CC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--------GQVVNVIDTPGLFDFSAGSEF--DE 90 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~--~~ 90 (240)
+...+|.+|+||||++...+...+...-.+..|+........+.... ...+.+|||.|...|.+.... +.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRD 90 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRD 90 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHh
Confidence 56778999999999998877654322222222222222211111100 125689999999999876665 88
Q ss_pred ceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEE
Q 036363 91 IHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVL 169 (240)
Q Consensus 91 ~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (240)
+.++++++|.++..+..+ ..++..++-.--.+ .|-+|++.||+|..... . + .......+.+..+.+|..
T Consensus 91 AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE-~PDivlcGNK~DL~~~R--~----V---s~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 91 AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE-NPDIVLCGNKADLEDQR--V----V---SEDQAAALADKYGLPYFE 160 (219)
T ss_pred hccceEEEeccchHHHHHHHHHHHHHHHhhccC-CCCEEEEcCccchhhhh--h----h---hHHHHHHHHHHhCCCeee
Confidence 899999999997777665 45666665432222 25689999999943221 1 1 122345667778888765
Q ss_pred EeCCCcchhhhHHHHHHHHH
Q 036363 170 FDNKTKDAAKRTEQIGKLRS 189 (240)
Q Consensus 170 ~~~~~~~~~~~~~~~~~ll~ 189 (240)
-+..... +....+.-|+.
T Consensus 161 TSA~tg~--Nv~kave~Lld 178 (219)
T KOG0081|consen 161 TSACTGT--NVEKAVELLLD 178 (219)
T ss_pred eccccCc--CHHHHHHHHHH
Confidence 5533221 22334454555
No 360
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1.1e-09 Score=82.09 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=42.1
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.|+.+++++++...+| ..++|+||||+|||||++.|+|...+.++.
T Consensus 12 ~Gr~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p~~G~ 57 (259)
T COG4559 12 AGRRLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSPDSGE 57 (259)
T ss_pred ecceeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCCCCCe
Confidence 5788999999999999 999999999999999999999998766654
No 361
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.92 E-value=2.5e-09 Score=85.14 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=40.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 13 ~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~ 58 (258)
T PRK13548 13 GGRTLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSPDSGE 58 (258)
T ss_pred CCeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 3456899999999999 999999999999999999999987665553
No 362
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.7e-09 Score=73.55 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=74.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
-..+..++|..|+|||.|+..++...+...- +....+.....-+++. ....+.+|||.|...|...... +++.+.
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadc--phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcC--CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3478899999999999999998866542221 1222222222223331 2336789999999998876665 899999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+.|+|++.+.+.... .++...+.+ .....-++++.||+|.
T Consensus 88 lmvyditrrstynhlsswl~dar~l--tnpnt~i~lignkadl 128 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADL 128 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhcc--CCCceEEEEecchhhh
Confidence 999999976666654 344333332 1112346677899993
No 363
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.91 E-value=1.4e-09 Score=95.38 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
..+++|++|++++| .+++++|++|+|||||++.|+|...+.+|..
T Consensus 348 ~~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 348 PPVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred CceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 45899999999999 9999999999999999999999877666543
No 364
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.91 E-value=2.6e-09 Score=88.47 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=40.5
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 17 ~~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 62 (351)
T PRK11432 17 GSNTVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ 62 (351)
T ss_pred CCeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence 3456789999999999 899999999999999999999998776654
No 365
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.91 E-value=1.4e-09 Score=88.85 Aligned_cols=47 Identities=28% Similarity=0.264 Sum_probs=42.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
|+..+++|++|.+.+| ..+.|+||+||||||++++|+|...+.+|..
T Consensus 16 g~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I 62 (352)
T COG3842 16 GDFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62 (352)
T ss_pred CCeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4567889999999999 9999999999999999999999988777654
No 366
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.90 E-value=1.4e-09 Score=82.55 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=41.2
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|..+++.+++|.++.| ..++++|+||+|||||+++|+|...+.++.
T Consensus 14 G~~~~L~gvsl~v~~G--eiv~llG~NGaGKTTlLkti~Gl~~~~~G~ 59 (237)
T COG0410 14 GKIQALRGVSLEVERG--EIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59 (237)
T ss_pred cceeEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCee
Confidence 5678899999999999 999999999999999999999988765543
No 367
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.90 E-value=4.2e-08 Score=75.30 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=75.7
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF- 88 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~- 88 (240)
--|.+.....-+|+++|-+.+|||||+..|++...-..+ -..+|.+|......+ ++-.+.++|.||+....+....
T Consensus 53 ~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~--yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGR 129 (364)
T KOG1486|consen 53 EGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAAS--YEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGR 129 (364)
T ss_pred CCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhc--eeeeEEEeecceEEe-cCceEEEecCcccccccccCCCC
Confidence 345555555589999999999999999999976432222 234456666555666 8889999999999876654433
Q ss_pred --------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhC
Q 036363 89 --------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG 120 (240)
Q Consensus 89 --------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~ 120 (240)
+.+|.++.|+|++ -+...+..++.-.+..|
T Consensus 130 GRQviavArtaDlilMvLDat--k~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 130 GRQVIAVARTADLILMVLDAT--KSEDQREILEKELEAVG 167 (364)
T ss_pred CceEEEEeecccEEEEEecCC--cchhHHHHHHHHHHHhc
Confidence 8899999999997 23344556665555555
No 368
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.90 E-value=4.4e-09 Score=87.29 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=41.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 4 ~~~~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~ 49 (363)
T TIGR01186 4 GGKKGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQ 49 (363)
T ss_pred CCceeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCCCceE
Confidence 4567899999999999 999999999999999999999998766653
No 369
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.90 E-value=2.3e-09 Score=88.90 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=40.2
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 15 ~~~~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~ 60 (353)
T TIGR03265 15 GAFTALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQTAGT 60 (353)
T ss_pred CCeEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCCCceE
Confidence 3456789999999999 999999999999999999999987766553
No 370
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.90 E-value=2.8e-09 Score=88.95 Aligned_cols=45 Identities=31% Similarity=0.339 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 15 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~ 59 (369)
T PRK11000 15 DVVISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59 (369)
T ss_pred CeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 456889999999999 899999999999999999999987665553
No 371
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.90 E-value=5.8e-09 Score=81.27 Aligned_cols=44 Identities=30% Similarity=0.283 Sum_probs=39.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (223)
T TIGR03740 12 KQTAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRPTSG 55 (223)
T ss_pred CEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456889999999999 99999999999999999999998765555
No 372
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.90 E-value=3.1e-09 Score=83.07 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=38.7
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 24 ~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~ 66 (228)
T PRK10584 24 SILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSGE 66 (228)
T ss_pred EEEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCee
Confidence 4899999999999 999999999999999999999987665553
No 373
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.90 E-value=4.4e-09 Score=77.21 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=39.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (240)
..+++++|.+|+|||||+|+|++......+.. .++|...... . .+..++++||||+
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~--~--~~~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEV--K--LDNKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEE--E--ecCCEEEEECCCC
Confidence 38999999999999999999999764333322 3444444332 2 2346899999996
No 374
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.90 E-value=3.2e-09 Score=80.65 Aligned_cols=56 Identities=30% Similarity=0.342 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcc-------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFK-------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (240)
.+++++|.+|+|||||+|+|++..... ......++|........ +..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 689999999999999999999864321 11122344444433322 225789999996
No 375
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.89 E-value=2e-09 Score=90.47 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=40.2
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+++.++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p~sG 58 (402)
T PRK09536 14 GDTTVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTPTAG 58 (402)
T ss_pred CCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 3567899999999999 99999999999999999999998766555
No 376
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.89 E-value=6.8e-09 Score=77.60 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=35.6
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++.+. +.+++| ..++|+|+||+|||||++.|+|...+.++
T Consensus 12 ~~~~l~~~-~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 54 (177)
T cd03222 12 VFFLLVEL-GVVKEG--EVIGIVGPNGTGKTTAVKILAGQLIPNGD 54 (177)
T ss_pred CEEEEccC-cEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence 44556664 888999 99999999999999999999998765544
No 377
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=4.1e-09 Score=80.19 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..++++++|.+.+| ..++|+|+||+|||||++.|+|..
T Consensus 20 ~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 20 RQLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred eEeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999 999999999999999999999964
No 378
>PRK12288 GTPase RsgA; Reviewed
Probab=98.89 E-value=3.4e-09 Score=87.37 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
..++|+|++|+|||||+|+|++.....++..+. .+|.....+.. .+ ...|+||||+-.+.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l---~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF---PH-GGDLIDSPGVREFG 271 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe---cC-CCEEEECCCCCccc
Confidence 468999999999999999999986655544322 12333333332 21 23599999999874
No 379
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=7.5e-09 Score=80.60 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=40.6
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
..+++++++.+.+| ..++++|+||||||||++.+.|...+.++..
T Consensus 17 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v 61 (235)
T COG1122 17 KAALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61 (235)
T ss_pred ceeeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence 47889999999999 9999999999999999999999988776543
No 380
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=2.6e-09 Score=88.36 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=39.6
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 18 ~~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~ 61 (343)
T PRK11153 18 IHALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERPTSGR 61 (343)
T ss_pred eEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 46899999999999 999999999999999999999987665553
No 381
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.88 E-value=4.3e-09 Score=71.86 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHA 93 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~ 93 (240)
.+|++||+.|+|||||.+++-|....... | ..++| ++. ..+||||-+-....+.. ..+|+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------T-----QAve~-~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadv 67 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------T-----QAVEF-NDK--GDIDTPGEYFEHPRWYHALITTLQDADV 67 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------c-----ceeec-cCc--cccCCchhhhhhhHHHHHHHHHhhccce
Confidence 68999999999999999999987542211 1 12233 222 27899997654444322 78899
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|..++++.+.-.- .|..-..+++|-|+||.|..+
T Consensus 68 i~~v~~and~~s~f~p--------~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 68 IIYVHAANDPESRFPP--------GFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred eeeeecccCccccCCc--------ccccccccceEEEEecccccc
Confidence 9999888754332211 111222355999999999553
No 382
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=6.2e-09 Score=81.60 Aligned_cols=44 Identities=25% Similarity=0.223 Sum_probs=39.6
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~~~G 55 (232)
T cd03300 12 GFVALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETPTSG 55 (232)
T ss_pred CeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 456899999999999 99999999999999999999998766554
No 383
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=2.7e-09 Score=85.87 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=39.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 20 ~~~l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~ 63 (279)
T PRK13635 20 TYALKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63 (279)
T ss_pred ccceeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 45899999999999 999999999999999999999997765553
No 384
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.87 E-value=3.4e-09 Score=87.37 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++.+| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 18 ~~~L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~ 61 (343)
T TIGR02314 18 IQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTSGS 61 (343)
T ss_pred eEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 36899999999999 999999999999999999999988766553
No 385
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.87 E-value=3.2e-08 Score=79.41 Aligned_cols=127 Identities=16% Similarity=0.226 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcc-----------c---c---C--------------CCCCcceeEEEEEEEEeC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFK-----------S---R---A--------------SSSGVTSTCEMHRTVLKD 67 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~-----------~---~---~--------------~~~~~t~~~~~~~~~~~~ 67 (240)
..+++.+|.-.-||||||-+|+-..... + + . ...|+|..+.|..+.. .
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT-~ 84 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST-E 84 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-c
Confidence 4899999999999999999987543210 0 0 0 0137888888776666 7
Q ss_pred CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHH
Q 036363 68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLE 145 (240)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~ 145 (240)
.+.+.+.||||+..+...... ..+|+.++++|+..++..+.++ -..+..++|- +++++.+||+|++.-+.+.++
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGI---rhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGI---RHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCC---cEEEEEEeeecccccCHHHHH
Confidence 889999999999887544333 8899999999998666555432 2344455554 689999999998766555666
Q ss_pred HHhcc
Q 036363 146 DYLGR 150 (240)
Q Consensus 146 ~~~~~ 150 (240)
.....
T Consensus 161 ~I~~d 165 (431)
T COG2895 161 AIVAD 165 (431)
T ss_pred HHHHH
Confidence 55544
No 386
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=7.5e-09 Score=90.12 Aligned_cols=117 Identities=26% Similarity=0.358 Sum_probs=89.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (240)
+....++|.++.+-..|||||..+|+......+. ....|+|......+... .++.++++|+||+.
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspghv 83 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGHV 83 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCcc
Confidence 4445689999999999999999999865543221 12335666555555444 78899999999999
Q ss_pred CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
||.+.... .-.|++++++|+..+...+....++.... +. ..+++|+||+|.+
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~-~~~~lvinkidrl 137 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EG-LKPILVINKIDRL 137 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----cc-CceEEEEehhhhH
Confidence 99887766 88999999999999999998888886542 11 3479999999954
No 387
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.87 E-value=4.5e-09 Score=87.69 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=40.2
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++..++++++|++.+| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 25 ~~~~~l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~ 70 (375)
T PRK09452 25 DGKEVISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70 (375)
T ss_pred CCeEEEeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 3456789999999999 899999999999999999999988766553
No 388
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.87 E-value=1e-08 Score=83.55 Aligned_cols=78 Identities=19% Similarity=0.086 Sum_probs=50.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEE---------------------Ee--CCcEEEEEeCCC
Q 036363 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTV---------------------LK--DGQVVNVIDTPG 78 (240)
Q Consensus 22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---------------------~~--~~~~~~l~DtpG 78 (240)
|++||.+++|||||+|+|++.....+.. ..+|......... +. ....+.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~--pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANY--PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCC--CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 6899999999999999999876422222 2233232222111 10 124689999999
Q ss_pred CCCCCCCCcC---------CCceEEEEEEECC
Q 036363 79 LFDFSAGSEF---------DEIHAALVVFSVR 101 (240)
Q Consensus 79 ~~~~~~~~~~---------~~~~~~l~v~~~~ 101 (240)
+......... +.+|++++|+++.
T Consensus 79 lv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9644322111 8999999999997
No 389
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.86 E-value=2.3e-09 Score=81.47 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 3 ~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 47 (190)
T TIGR01166 3 GGPEVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRPQSG 47 (190)
T ss_pred CccceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3567899999999999 99999999999999999999998765544
No 390
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.86 E-value=1.9e-08 Score=80.19 Aligned_cols=44 Identities=30% Similarity=0.246 Sum_probs=39.0
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++.+| ..++|+|+||+|||||+++|+|...+..|.
T Consensus 37 ~~il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~ 80 (264)
T PRK13546 37 FFALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLSPTVGK 80 (264)
T ss_pred eEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 45789999999999 999999999999999999999987655543
No 391
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.86 E-value=4.5e-09 Score=87.33 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=38.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS 47 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~ 47 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+
T Consensus 17 ~~~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~ 59 (362)
T TIGR03258 17 ANTVLDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAAG 59 (362)
T ss_pred CeEEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 446789999999999 8999999999999999999999877655
No 392
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.86 E-value=4.9e-09 Score=80.72 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=39.0
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 21 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 64 (207)
T cd03369 21 PPVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEAEEGK 64 (207)
T ss_pred cccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCe
Confidence 36899999999999 999999999999999999999987655543
No 393
>PRK12289 GTPase RsgA; Reviewed
Probab=98.85 E-value=5e-09 Score=86.38 Aligned_cols=60 Identities=28% Similarity=0.407 Sum_probs=39.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
..++|+|++|+|||||+|+|++......+..+. | +|.....+ ..+.+ ..|+||||+..+.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCccccc
Confidence 468999999999999999999876544443221 1 23333322 22122 3799999998764
No 394
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.85 E-value=1.6e-09 Score=84.08 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=39.0
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
...|++|.+|+| .+++++|+|||||||++++|+|...+.+|..
T Consensus 39 AVqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 39 AVQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred hhheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 567899999999 9999999999999999999999988777654
No 395
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.85 E-value=5.6e-09 Score=82.27 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
..++++|++|+|||||+|.|++.....++.... .+|........ . ...++||||+..+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccC
Confidence 589999999999999999999875544332211 23444433333 2 24799999998874
No 396
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.84 E-value=3.4e-09 Score=92.44 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 23 ~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~ 67 (510)
T PRK15439 23 GVEVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPPDSGT 67 (510)
T ss_pred CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 456899999999999 999999999999999999999987665543
No 397
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.84 E-value=8.3e-09 Score=81.16 Aligned_cols=44 Identities=32% Similarity=0.380 Sum_probs=39.0
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+..|
T Consensus 12 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (237)
T TIGR00968 12 SFQALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQPDSG 55 (237)
T ss_pred CeeeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 456899999999999 99999999999999999999998655444
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=98.83 E-value=7.7e-09 Score=83.91 Aligned_cols=59 Identities=32% Similarity=0.395 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
..++++|++|+|||||+|+|+|.....++.... .+|...... .. . ...+++||||+..+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~-~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DL-P-GGGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--Ec-C-CCcEEEECCCcCcc
Confidence 689999999999999999999986655543321 123222222 22 2 23589999999875
No 399
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.83 E-value=7.5e-09 Score=85.84 Aligned_cols=46 Identities=30% Similarity=0.437 Sum_probs=40.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 13 ~~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 58 (353)
T PRK10851 13 GRTQVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58 (353)
T ss_pred CCeEEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 3456889999999999 899999999999999999999987666553
No 400
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.83 E-value=2.8e-08 Score=73.29 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=41.6
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
+|+.++++++|.+++| ..+-++||+|||||||++.|++...+..|..
T Consensus 13 ~g~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i 59 (223)
T COG2884 13 GGREALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59 (223)
T ss_pred CCchhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence 4567999999999999 9999999999999999999999887766543
No 401
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.3e-08 Score=75.52 Aligned_cols=44 Identities=30% Similarity=0.306 Sum_probs=38.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+.++.++++++.+| ..++++||+|||||||+|.+.|...+..+.
T Consensus 18 ~~~le~vsL~ia~g--e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~ 61 (259)
T COG4525 18 RSALEDVSLTIASG--ELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61 (259)
T ss_pred hhhhhccceeecCC--CEEEEEcCCCccHHHHHHHHhcCcCcccce
Confidence 34889999999999 999999999999999999999987655543
No 402
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.83 E-value=5.7e-09 Score=82.87 Aligned_cols=62 Identities=31% Similarity=0.359 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
...+++|++|+|||||+|+|.+......+... .|-.++....-+.+ .....|+||||+..+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccC
Confidence 68999999999999999999986543333221 12112222222222 2345699999999874
No 403
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.83 E-value=4.7e-07 Score=74.05 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=37.4
Q ss_pred CcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHH-HHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 68 GQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHS-LQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+..+.++||+|....... ....+|.+++|+++. +..+...+.. +.+. .-++|+||+|.+..
T Consensus 148 g~d~viieT~Gv~qs~~~-i~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQSETA-VAGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCccchhH-HHHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeehhcccch
Confidence 467899999999844322 126788989886533 2233322222 2222 13799999997654
No 404
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.82 E-value=9.6e-09 Score=82.91 Aligned_cols=60 Identities=37% Similarity=0.472 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
..++++|++|+|||||+|+|+|...+.++.... + +|..... ..+ . ....++||||+..+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~-~-~~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL-P-GGGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc-C-CCCEEEECCCCCccC
Confidence 689999999999999999999987655543321 1 2222222 222 2 134799999998763
No 405
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.82 E-value=3.3e-09 Score=81.96 Aligned_cols=44 Identities=30% Similarity=0.270 Sum_probs=39.2
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 14 ~~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (211)
T cd03225 14 RPALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGPTSGE 57 (211)
T ss_pred eeeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 56899999999999 999999999999999999999987655543
No 406
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.82 E-value=4.8e-09 Score=93.15 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=38.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| .+++|+|++|+|||||++.|+|.. +.+|.
T Consensus 362 ~~~vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 362 GKTLAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred CCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 356899999999999 999999999999999999999987 55543
No 407
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.82 E-value=4.8e-09 Score=78.01 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=52.3
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG 85 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (240)
...|++|.+..| ..++++|+||+||||+++.|.+...|.++.... ........+..+ ......+.+-.|++...+.
T Consensus 17 AvrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~i-dg~d~~~~p~~v-rr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 17 AVRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLIPDSGKVTI-DGVDTVRDPSFV-RRKIGVLFGERGLYARLTA 92 (245)
T ss_pred hhhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhccCCCceEEE-eecccccChHHH-hhhcceecCCcChhhhhhH
Confidence 578999999999 999999999999999999999987766654311 111111111111 2223345577777776665
Q ss_pred CcC
Q 036363 86 SEF 88 (240)
Q Consensus 86 ~~~ 88 (240)
.++
T Consensus 93 rEn 95 (245)
T COG4555 93 REN 95 (245)
T ss_pred HHH
Confidence 544
No 408
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.9e-08 Score=75.60 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=35.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
|...++.++++.++.+ ...+++||+|||||||+++|-..
T Consensus 18 g~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 18 GDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred CchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhh
Confidence 5678899999999999 99999999999999999988644
No 409
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.81 E-value=1.2e-08 Score=86.70 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
.+|+|+|.-|+||||||-+++....+..-..... ++.- ... .+......++||+.-.+....... +.+|++++
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---Ccc-CcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 8999999999999999999999876544322111 1111 111 123445789999843332211111 88999999
Q ss_pred EEECCCCCCHH--HHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 97 VFSVRSRFSQE--EEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 97 v~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
++..++..+.+ ...+|-.+...+|.....|+|+|.||.|.....
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 98887433333 467888888888877788999999999976543
No 410
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=6.8e-09 Score=76.35 Aligned_cols=42 Identities=33% Similarity=0.341 Sum_probs=37.0
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS 47 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~ 47 (240)
..+++++++.+.+| ..++|+|+||+|||||+++|+|...+..
T Consensus 12 ~~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~~~~ 53 (157)
T cd00267 12 RTALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLKPTS 53 (157)
T ss_pred eeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 35788999999999 9999999999999999999999865433
No 411
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.81 E-value=1.6e-08 Score=81.71 Aligned_cols=60 Identities=25% Similarity=0.389 Sum_probs=44.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
..+++++|.+|+|||||+|+|++......+. ..+.|...+... -+..++++||||+....
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPK 180 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCC
Confidence 3799999999999999999999987544433 345565554322 23468899999997654
No 412
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.81 E-value=3.8e-09 Score=81.69 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=38.5
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|.+++| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 1 ~vl~~vs~~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~ 43 (213)
T PRK15177 1 VVLDKTDFVMGYH--EHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43 (213)
T ss_pred CeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence 3688999999999 999999999999999999999987665554
No 413
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.81 E-value=1.3e-07 Score=66.96 Aligned_cols=120 Identities=18% Similarity=0.068 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEE-EEEEEeC--CcEEEEEeCCCCCCCCCCCcC---CCce
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-HRTVLKD--GQVVNVIDTPGLFDFSAGSEF---DEIH 92 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~~~---~~~~ 92 (240)
.-+|+++|.-++|||+++..++-..-..... ...|....| .+++.+. ...+.+.||.|+.+....... .-+|
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e--~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTE--LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCc--cccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 3799999999999999998876443222211 111222221 2222211 236889999999887333222 8899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
++++|++..+.-|.+-...++.-...+....-.|++++.|+.|...+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~ 134 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR 134 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccch
Confidence 999999887655555545544444443344446789999999976543
No 414
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=3.9e-09 Score=80.37 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=40.4
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
|+..++++++|.++.| ..|+|||++|+|||||+++|.|...+.++
T Consensus 15 ~~~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~t~G 59 (258)
T COG3638 15 GGHQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDPTSG 59 (258)
T ss_pred CCceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCCCcc
Confidence 5778999999999999 99999999999999999999997655554
No 415
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=7.8e-09 Score=86.82 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=39.0
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 41 ~~~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~ 84 (400)
T PRK10070 41 SLGVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84 (400)
T ss_pred eEEEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence 34689999999999 999999999999999999999987766553
No 416
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.81 E-value=1.9e-08 Score=75.10 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=40.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (240)
.+++++|.+|+|||||+|.|++......+ ...++|....... . . ..+.++||||+.
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~--~-~-~~~~~iDtpG~~ 171 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIK--I-S-PGIYLLDTPGIL 171 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEE--e-c-CCEEEEECCCCC
Confidence 79999999999999999999987653222 2234555444332 2 2 567899999974
No 417
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.80 E-value=3.5e-09 Score=81.46 Aligned_cols=44 Identities=32% Similarity=0.342 Sum_probs=39.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 10 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 10 DKIILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred CEEEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 456899999999999 99999999999999999999998765554
No 418
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.80 E-value=4.1e-09 Score=81.04 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=39.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 13 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 56 (205)
T cd03226 13 TEILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKESSGS 56 (205)
T ss_pred CceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 56899999999999 999999999999999999999987655543
No 419
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=9.7e-09 Score=85.84 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=39.5
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 31 ~~~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 75 (377)
T PRK11607 31 GQHAVDDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQPTAGQ 75 (377)
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 345788999999999 899999999999999999999998766553
No 420
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=3e-09 Score=83.92 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=39.1
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 14 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (242)
T cd03295 14 KKAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEPTSGE 57 (242)
T ss_pred ceEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 56899999999999 999999999999999999999987655543
No 421
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.80 E-value=5.8e-09 Score=92.61 Aligned_cols=44 Identities=27% Similarity=0.261 Sum_probs=39.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..+++++++.+++| .+++|+|++|+|||||++.|+|...+.+|.
T Consensus 348 ~~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~ 391 (588)
T PRK13657 348 RQGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391 (588)
T ss_pred CceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 45899999999999 999999999999999999999987766554
No 422
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.5e-08 Score=78.23 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=34.8
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 16 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 16 HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 899999999 99999999999999999999998766554
No 423
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.80 E-value=4.5e-09 Score=81.98 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=39.5
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++++| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 19 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 62 (225)
T PRK10247 19 DAKILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISPTSG 62 (225)
T ss_pred CceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 456899999999999 99999999999999999999998765554
No 424
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.79 E-value=3.1e-08 Score=82.36 Aligned_cols=118 Identities=25% Similarity=0.296 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------------CCCCCcceeEEEEEEEEe----CCcEEEEEeCCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMHRTVLK----DGQVVNVIDTPGL 79 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~ 79 (240)
...++..+|.+...|||||..+|+.....-+. ....|.|...+.....+. ....++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 35589999999999999999998754321110 012466766665555542 2357899999999
Q ss_pred CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.||.-.... ..+.+.++|+|++.+...+.....-... ..+ --++.|+||.|+-..
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl---e~~--LeIiPViNKIDLP~A 143 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL---ENN--LEIIPVLNKIDLPAA 143 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH---HcC--cEEEEeeecccCCCC
Confidence 999755444 7788899999999777666544333332 221 348999999995444
No 425
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.79 E-value=4.2e-09 Score=81.47 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=39.5
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 11 ~~~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~ 55 (213)
T cd03235 11 GHPVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKPTSGS 55 (213)
T ss_pred CEEeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCCE
Confidence 346899999999999 999999999999999999999987655543
No 426
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.6e-08 Score=79.26 Aligned_cols=136 Identities=17% Similarity=0.245 Sum_probs=90.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
+..+|+.||+-..|||||..+|++...... .....|.|.......++. .++.+.-+|+||+-|+-
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDYv 89 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYV 89 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHHH
Confidence 458999999999999999999875322000 011235666665555555 67788899999999875
Q ss_pred CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHH
Q 036363 84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILH 161 (240)
Q Consensus 84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (240)
..... .+.|+.|+|+.++++.-++.++-+-.. ...| .+++++++||+|.+.+. .+-+.+.. .+++++.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLla-rqvG---vp~ivvflnK~Dmvdd~--ellelVem----EvreLLs 159 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLA-RQVG---VPYIVVFLNKVDMVDDE--ELLELVEM----EVRELLS 159 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhh-hhcC---CcEEEEEEecccccCcH--HHHHHHHH----HHHHHHH
Confidence 43322 678899999999877767665443322 2333 37789999999977642 33333332 3566666
Q ss_pred HhC
Q 036363 162 LFD 164 (240)
Q Consensus 162 ~~~ 164 (240)
.++
T Consensus 160 ~y~ 162 (394)
T COG0050 160 EYG 162 (394)
T ss_pred HcC
Confidence 644
No 427
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.79 E-value=2.1e-08 Score=77.53 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=36.7
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
.+.+++|.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 13 ~~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 13 LPMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred cceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 356899999999 99999999999999999999998766555
No 428
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.79 E-value=6.8e-09 Score=82.29 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=83.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------- 88 (240)
...|++||-++||||||++.|++....+... ...|-.........+.+..+.+.||-||.+.....-.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~dr--LFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDR--LFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccch--hheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 3799999999999999999999766544432 3344444555555667888899999999876554322
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCC---CcCCeEEEEEeCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGK---NCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~i~v~~~~D~~ 137 (240)
..+|.++-|+|++++.-...+.........+|- ....+++-|-||.|.-
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 888999999999977766666555555555552 1234567778888854
No 429
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=6e-08 Score=71.09 Aligned_cols=115 Identities=22% Similarity=0.138 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
...+++++|..|.||||+.++.+-..+-.....+.+............ +...+.+|||.|..-+...... -...+.+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~-g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNR-GQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeeccc-CcEEEEeeecccceeecccccccEEecceeE
Confidence 358999999999999999998876554333333233222222121111 2357889999999988776665 6667788
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
++++++.+++.... .+-+.+...++. .|+++..||.|.
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi 126 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDI 126 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceec
Confidence 88999888887764 455566666554 579999999993
No 430
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.3e-09 Score=83.66 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 15 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 59 (241)
T PRK14250 15 GKEILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59 (241)
T ss_pred CeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 456889999999999 899999999999999999999987655553
No 431
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.78 E-value=5.5e-09 Score=92.71 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=40.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
+.+++++++++++| .+++|+|++|+|||||++.|+|...+.+|..
T Consensus 356 ~~il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I 400 (582)
T PRK11176 356 VPALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400 (582)
T ss_pred CccccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence 56899999999999 9999999999999999999999887766543
No 432
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.78 E-value=6.1e-09 Score=82.23 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (243)
T TIGR02315 14 GKQALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEPSSG 57 (243)
T ss_pred CcceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 456899999999999 99999999999999999999998765554
No 433
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.78 E-value=7.4e-09 Score=82.96 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=37.1
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
+..++++++|.+.+| .+++|+|+||+|||||+++|+|...
T Consensus 16 ~~~~l~~isl~I~~G--e~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 16 GNAVLENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhhhcC
Confidence 356899999999999 9999999999999999999999865
No 434
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.78 E-value=6.9e-09 Score=76.00 Aligned_cols=39 Identities=33% Similarity=0.417 Sum_probs=34.0
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
++++++.+ .+++|+|++|+|||||+|.|.|...+.++..
T Consensus 18 fdl~v~~g--e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i 56 (231)
T COG3840 18 FDLTVPAG--EIVAILGPSGAGKSTLLNLIAGFETPASGEI 56 (231)
T ss_pred EEEeecCC--cEEEEECCCCccHHHHHHHHHhccCCCCceE
Confidence 56788889 9999999999999999999999887766543
No 435
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=4.9e-09 Score=82.54 Aligned_cols=44 Identities=32% Similarity=0.340 Sum_probs=39.4
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 14 DFVALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred CEEeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456899999999999 99999999999999999999998765554
No 436
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=1.2e-08 Score=89.43 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 331 ~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~ 375 (530)
T PRK15064 331 NGPLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELEPDSGT 375 (530)
T ss_pred CceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 456899999999999 999999999999999999999987655543
No 437
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.5e-08 Score=75.71 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----CCceEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----DEIHAA 94 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----~~~~~~ 94 (240)
..|.++|++++|||+|+-.|.......+.. ........... +.....++|.||+......-.. ..+-++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~-gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRL-GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEee-cCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 689999999999999998776543211111 11111122222 5556799999999864322111 477889
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHh----CCCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRFSQEEEATLHSLQTLF----GKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~i~v~~~~D~~~~ 139 (240)
+||+|.. -+...-+..-+.+...+ +....+|+++..||-|.+..
T Consensus 113 VFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 113 VFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 9999987 44444444444433332 23445789999999997754
No 438
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.76 E-value=6.1e-09 Score=81.86 Aligned_cols=44 Identities=27% Similarity=0.234 Sum_probs=38.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 55 (236)
T cd03219 12 GLVALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRPTSG 55 (236)
T ss_pred CEEEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 345889999999999 99999999999999999999998765554
No 439
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.76 E-value=5.9e-09 Score=79.84 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 12 ~~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 12 HDQPLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred CCeeEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3457899999999999 99999999999999999999998766554
No 440
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.76 E-value=8.2e-09 Score=91.76 Aligned_cols=44 Identities=32% Similarity=0.504 Sum_probs=39.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| .+++++|++|+|||||++.|+|...+.+|.
T Consensus 354 ~~il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 354 NLVLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred CceeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 46899999999999 999999999999999999999987766554
No 441
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.76 E-value=1.9e-08 Score=80.77 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
..+++++|.+|+|||||+|+|++......+.. .+.|...+... . +..+.++||||+...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~--~--~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIK--L--SDGLELLDTPGILWP 176 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEE--e--CCCEEEEECCCcccC
Confidence 37899999999999999999998765444433 45555544322 2 336789999999654
No 442
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.76 E-value=1.3e-08 Score=84.95 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|...++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 35 g~~~~l~~vsf~i~~G--ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 35 GLVVGVANASLDIEEG--EICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CCEEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 4556789999999999 999999999999999999999987766553
No 443
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=7.4e-09 Score=81.20 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=39.0
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 19 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 61 (233)
T cd03258 19 TALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERPTSGS 61 (233)
T ss_pred eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 6899999999999 999999999999999999999987665543
No 444
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=4.8e-09 Score=87.26 Aligned_cols=109 Identities=19% Similarity=0.174 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcc----ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------- 88 (240)
..+++||.+|+|||||+|+|++..... ......++|...... .. +..+.++||||+.........
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--PL--DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--Ee--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 689999999999999999999854311 122224445444322 22 234679999999865422111
Q ss_pred -----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 89 -----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 -----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.......|.++....+..+....+..+. . ....+.+.+++.+.+
T Consensus 231 ~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~----~-~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YITPKKEIKPKTYQLNPNQTLFLGGLARFDYLK----G-EKTSFTFYVSNELNI 279 (360)
T ss_pred hcCCCCccCceEEEeCCCCEEEEceEEEEEEec----C-CceEEEEEccCCcee
Confidence 4455666666655433333333333332 1 123355556665544
No 445
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.76 E-value=8.1e-10 Score=76.08 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=73.5
Q ss_pred EEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEE
Q 036363 23 VLVGHTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFS 99 (240)
Q Consensus 23 ~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~ 99 (240)
+++|.+++|||-|+-.+-...+.... .+..|+..........- ....+.+|||.|+..|.+.... +.+|++++++|
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~-~kvklqiwdtagqerfrsvt~ayyrda~allllyd 79 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDD-KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD 79 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCC-cEEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence 47899999999887554332221111 11122222222111111 2346789999999999887766 99999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 100 VRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 100 ~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+.++.|.+. ..++..+.+.-.. . ..++++.||+|...
T Consensus 80 iankasfdn~~~wlsei~ey~k~-~-v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKE-A-VALMLLGNKCDLAH 117 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHh-h-HhHhhhccccccch
Confidence 999999887 5666666655322 2 45789999999543
No 446
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.76 E-value=1.1e-08 Score=89.77 Aligned_cols=43 Identities=30% Similarity=0.334 Sum_probs=39.2
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.+++++++.+++| .+++++|++|+|||||++.|+|...+.+|.
T Consensus 336 ~il~~i~l~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 378 (529)
T TIGR02857 336 PALRPVSFTVPPG--ERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378 (529)
T ss_pred ccccceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 5899999999999 999999999999999999999987766554
No 447
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.76 E-value=6.7e-09 Score=80.38 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=38.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+.++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 14 ~~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (214)
T cd03292 14 TAALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSG 56 (214)
T ss_pred ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 46899999999999 99999999999999999999998765544
No 448
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.76 E-value=6.6e-09 Score=80.01 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=39.1
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 14 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (207)
T PRK13539 14 GRVLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPPAAG 57 (207)
T ss_pred CeEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 346889999999999 99999999999999999999998765554
No 449
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.76 E-value=5.8e-09 Score=81.49 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=36.5
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|..
T Consensus 12 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 12 DKHALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456899999999999 999999999999999999999986
No 450
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.75 E-value=8.4e-09 Score=80.62 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=38.9
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|++++| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 61 (228)
T cd03257 19 KALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKPTSGS 61 (228)
T ss_pred eeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 6899999999999 999999999999999999999987655543
No 451
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.75 E-value=6.9e-08 Score=75.17 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC----CCCcC--
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS----AGSEF-- 88 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~----~~~~~-- 88 (240)
.+....++++|.+++|||+|+|.++..... ..+....+.|.....+. -+..++++|.||+.... ...+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence 455589999999999999999999865332 22222344454444332 35688999999943221 11111
Q ss_pred ---------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ---------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ---------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
...-.++++++++.++...|...+.++- +...|+.+|+||||....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g-----e~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG-----ENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh-----hcCCCeEEeeehhhhhhh
Confidence 3333455556666566666766766663 334679999999997643
No 452
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.75 E-value=6.1e-09 Score=82.14 Aligned_cols=44 Identities=32% Similarity=0.420 Sum_probs=39.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 15 ~~~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 58 (241)
T PRK10895 15 GRRVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58 (241)
T ss_pred CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456889999999999 99999999999999999999998765554
No 453
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=8.1e-09 Score=82.85 Aligned_cols=46 Identities=22% Similarity=0.136 Sum_probs=40.5
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 12 ~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 57 (271)
T PRK13638 12 QDEPVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRPQKGA 57 (271)
T ss_pred CCcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCccE
Confidence 3456899999999999 999999999999999999999987665553
No 454
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.75 E-value=3e-07 Score=87.29 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC---CcC--
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRA------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG---SEF-- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~~~-- 88 (240)
.=.++||++|+||||+++.. |...+-... ...+.|.. +.|.-....+++||+|.+-.... ...
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence 45789999999999999876 555432211 11223333 33434556779999997754432 111
Q ss_pred --------------CCceEEEEEEECCCCC--CHHH--------HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccH
Q 036363 89 --------------DEIHAALVVFSVRSRF--SQEE--------EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETL 144 (240)
Q Consensus 89 --------------~~~~~~l~v~~~~~~~--~~~~--------~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~ 144 (240)
..++++|+++++.+-+ +..+ +..+..+.+.+|-. .|+.+|+||+|.+.. +
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC----H
Confidence 7799999999987333 2222 55666677777753 689999999997764 4
Q ss_pred HHHhcc
Q 036363 145 EDYLGR 150 (240)
Q Consensus 145 ~~~~~~ 150 (240)
.+|+..
T Consensus 260 ~~~f~~ 265 (1169)
T TIGR03348 260 EEFFAD 265 (1169)
T ss_pred HHHHHh
Confidence 555555
No 455
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.8e-09 Score=87.10 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=90.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc--ccCC--------------CCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--SRAS--------------SSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (240)
..++|+++.+..+||||....|+-..... .+.. ..|.|.........| ++++++++||||+.+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcce
Confidence 34799999999999999998886433211 1111 236677777777888 999999999999999
Q ss_pred CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|.-..+. +..|+++.|+|++.+...+...+|+... ....|..+.+||+|++..
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqad-----k~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-----KFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc-----ccCCchhhhhhhhhhhhh
Confidence 9876665 8889999999999888888888887763 334667888999998754
No 456
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.75 E-value=6.5e-09 Score=81.04 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=40.0
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
|+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 33 ~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G 77 (224)
T cd03220 33 GEFWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPPDSG 77 (224)
T ss_pred CCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4577999999999999 99999999999999999999998655444
No 457
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.6e-08 Score=81.59 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=42.7
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeE
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTC 58 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~ 58 (240)
|..+++..++|-+.-. .+|+||||||+|||||+..|+|...+..+......+..+
T Consensus 598 gqkpLFkkldFGiDmd--SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i 652 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMD--SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI 652 (807)
T ss_pred CCCchhhccccccccc--ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence 3456788888888777 899999999999999999999988776665444333333
No 458
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=7.9e-09 Score=81.47 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=38.9
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 56 (241)
T cd03256 14 KKALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEPTSG 56 (241)
T ss_pred cEEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 56899999999999 99999999999999999999998765554
No 459
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.74 E-value=1e-08 Score=91.62 Aligned_cols=44 Identities=27% Similarity=0.399 Sum_probs=40.0
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..+++++++.+++| .+|+++|++|||||||++.|+|...+..|.
T Consensus 486 ~~vL~~isL~I~~G--e~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 486 PPVLEDLSLEIPPG--EKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred cchhhceeEEeCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 46899999999999 999999999999999999999988776654
No 460
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.74 E-value=6.8e-09 Score=83.32 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 19 ~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 63 (272)
T PRK15056 19 GHTALRDASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRLASGK 63 (272)
T ss_pred CcEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 356899999999999 999999999999999999999987665543
No 461
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.74 E-value=9.1e-09 Score=82.37 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=39.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 26 ~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~ 69 (267)
T PRK15112 26 VEAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEPTSGE 69 (267)
T ss_pred cceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCCE
Confidence 46899999999999 999999999999999999999987666553
No 462
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.74 E-value=2.6e-08 Score=73.93 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=39.9
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|...+++++++.+++| ..-+++||||+|||||+..++......+|.
T Consensus 12 ~~~~vl~~isl~i~~g--~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~ 57 (252)
T COG4604 12 GTKVVLDDVSLDIPKG--GITSIIGPNGAGKSTLLSMMSRLLKKDSGE 57 (252)
T ss_pred CCEEeeccceeeecCC--ceeEEECCCCccHHHHHHHHHHhccccCce
Confidence 5677899999999999 899999999999999999988776655543
No 463
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.4e-08 Score=81.51 Aligned_cols=114 Identities=23% Similarity=0.317 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.|+..|+--.|||||+.+++|..... ......|.|....++.... .+..+.++|.||+.++...... .+.|.+++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 57889999999999999999865311 1233468888888888877 6678999999999998655444 789999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++++++..+..+.+..+. .||- ++.++|+||+|...+
T Consensus 81 V~~deGl~~qtgEhL~iLd-llgi---~~giivltk~D~~d~ 118 (447)
T COG3276 81 VAADEGLMAQTGEHLLILD-LLGI---KNGIIVLTKADRVDE 118 (447)
T ss_pred EeCccCcchhhHHHHHHHH-hcCC---CceEEEEeccccccH
Confidence 9998888888777665553 4453 668999999997755
No 464
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.74 E-value=1.6e-08 Score=91.71 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=39.9
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+.++++++|++++| .+|+++|++|+|||||++.|+|...+.+|.
T Consensus 492 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 492 PPLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred CCcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 56899999999999 999999999999999999999987766654
No 465
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.74 E-value=7.2e-09 Score=81.44 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 13 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 57 (236)
T TIGR03864 13 ARRALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57 (236)
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 456889999999999 999999999999999999999987665553
No 466
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=3.8e-08 Score=77.14 Aligned_cols=39 Identities=31% Similarity=0.306 Sum_probs=35.2
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
.+++|++.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 16 ~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 54 (232)
T PRK10771 16 MRFDLTVERG--ERVAILGPSGAGKSTLLNLIAGFLTPASG 54 (232)
T ss_pred ceeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3899999999 99999999999999999999998766555
No 467
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.74 E-value=7.9e-09 Score=80.38 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=39.1
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 18 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 61 (221)
T TIGR02211 18 TRVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61 (221)
T ss_pred eEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 35899999999999 999999999999999999999987655543
No 468
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.74 E-value=2.1e-06 Score=72.43 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=64.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh------CCCCcc--ccCCCC---------CcceeEEEEEEE--E------------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSIL------GRRAFK--SRASSS---------GVTSTCEMHRTV--L------------ 65 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~------g~~~~~--~~~~~~---------~~t~~~~~~~~~--~------------ 65 (240)
+++..|+++|++|+||||++..|+ |....- ...... +.......+... .
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 445799999999999999999886 322110 000000 000111111110 0
Q ss_pred --eCCcEEEEEeCCCCCCCCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363 66 --KDGQVVNVIDTPGLFDFSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRD 135 (240)
Q Consensus 66 --~~~~~~~l~DtpG~~~~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D 135 (240)
..+..+.++||||........-. ..++.+++|+|+..+... ....+.+.+. ..+.-+|+||.|
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~-----~~~~g~IlTKlD 250 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDS-----VDVGSVIITKLD 250 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhc-----cCCcEEEEECcc
Confidence 02457899999997654322111 568889999998733222 2333333322 235678999999
Q ss_pred CCC
Q 036363 136 ELE 138 (240)
Q Consensus 136 ~~~ 138 (240)
...
T Consensus 251 ~~a 253 (429)
T TIGR01425 251 GHA 253 (429)
T ss_pred CCC
Confidence 543
No 469
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.73 E-value=9.3e-09 Score=81.53 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=39.5
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 15 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (250)
T PRK11264 15 GQTVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59 (250)
T ss_pred CeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 456899999999999 999999999999999999999987655543
No 470
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=9e-09 Score=81.22 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=39.5
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (242)
T PRK11124 14 AHQALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMPRSG 57 (242)
T ss_pred CeeeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456899999999999 99999999999999999999998765554
No 471
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.73 E-value=2.5e-08 Score=90.18 Aligned_cols=44 Identities=32% Similarity=0.370 Sum_probs=39.9
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| .+++++|++|+|||||++.|+|...+.+|.
T Consensus 466 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 466 PLILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred ccceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 46899999999999 999999999999999999999987766654
No 472
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.73 E-value=8.2e-09 Score=81.79 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=39.2
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 16 ~~~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G 59 (251)
T PRK09544 16 QRRVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEG 59 (251)
T ss_pred CceEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456889999999999 99999999999999999999998765554
No 473
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.73 E-value=9.2e-09 Score=93.04 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| .+|+++|++|+|||||++.|+|...+.+|.
T Consensus 478 ~~vL~~i~l~i~~G--~~iaIvG~sGsGKSTLlklL~gl~~p~~G~ 521 (694)
T TIGR03375 478 TPALDNVSLTIRPG--EKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521 (694)
T ss_pred ccceeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 45899999999999 999999999999999999999987766654
No 474
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.72 E-value=1e-08 Score=82.05 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=39.6
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 24 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 67 (265)
T TIGR02769 24 APVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKPAQGT 67 (265)
T ss_pred eEEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 56899999999999 999999999999999999999987665543
No 475
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.72 E-value=3.3e-09 Score=78.50 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=39.6
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
||-..+++++|++.+| .-=++|||||+||||++..|+|...+..+
T Consensus 16 ~GF~Aln~ls~~v~~G--elr~lIGpNGAGKTT~mD~ItGKtrp~~G 60 (249)
T COG4674 16 GGFKALNDLSFSVDPG--ELRVLIGPNGAGKTTLMDVITGKTRPQEG 60 (249)
T ss_pred cceeeeeeeEEEecCC--eEEEEECCCCCCceeeeeeecccCCCCcc
Confidence 5677889999999999 67789999999999999999999876644
No 476
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.72 E-value=9e-09 Score=91.07 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=40.1
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
..++++++|++++| .+++++|++|+|||||++.|+|...+.+|..
T Consensus 353 ~~il~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 353 QPVLKGLSLQIKAG--EKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CcceecceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 45899999999999 9999999999999999999999876666543
No 477
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.6e-09 Score=87.67 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=39.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
..+++|++|++..| .+|+|+|++|||||||+..|+|.-.+..|..
T Consensus 351 ~~~L~~~~l~l~~G--EkvAIlG~SGsGKSTllqLl~~~~~~~~G~i 395 (573)
T COG4987 351 TKALKNFNLTLAQG--EKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395 (573)
T ss_pred cchhhccceeecCC--CeEEEECCCCCCHHHHHHHHHhccCCCCCee
Confidence 36899999999999 9999999999999999999998766655543
No 478
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.72 E-value=1.1e-08 Score=77.12 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=38.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|.+.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 11 ~~~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~~G 54 (180)
T cd03214 11 GRTVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPSSG 54 (180)
T ss_pred CeeeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 346889999999999 99999999999999999999998765444
No 479
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.72 E-value=1e-08 Score=80.84 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=39.2
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 13 ~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (240)
T PRK09493 13 PTQVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEITSG 56 (240)
T ss_pred CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456899999999999 99999999999999999999998765554
No 480
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.71 E-value=3.6e-08 Score=82.03 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=35.1
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+++|.+.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 15 ~isl~i~~G--ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~ 53 (354)
T TIGR02142 15 DADFTLPGQ--GVTAIFGRSGSGKTTLIRLIAGLTRPDEGE 53 (354)
T ss_pred EEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 799999999 899999999999999999999987665543
No 481
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.71 E-value=1.1e-08 Score=81.25 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=39.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 15 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (253)
T TIGR02323 15 GGKGCRDVSFDLYPG--EVLGIVGESGSGKSTLLGCLAGRLAPDHG 58 (253)
T ss_pred CceEeecceEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 446789999999999 99999999999999999999998766554
No 482
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.71 E-value=1.4e-08 Score=78.97 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=38.8
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 59 (220)
T cd03245 17 IPALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59 (220)
T ss_pred cccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 45899999999999 99999999999999999999998765554
No 483
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.71 E-value=1.1e-08 Score=80.76 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=39.4
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 14 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G 57 (242)
T TIGR03411 14 GFKALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRPDEG 57 (242)
T ss_pred CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 456899999999999 99999999999999999999998765554
No 484
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=1.4e-08 Score=79.41 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=39.3
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 16 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (229)
T cd03254 16 KPVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59 (229)
T ss_pred CccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 35899999999999 899999999999999999999987665553
No 485
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.71 E-value=1.3e-08 Score=80.03 Aligned_cols=44 Identities=32% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 16 ~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 59 (238)
T cd03249 16 VPILKGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDPTSGE 59 (238)
T ss_pred ccceeceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCCCCCE
Confidence 35899999999999 999999999999999999999987655553
No 486
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4.1e-08 Score=77.10 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=37.9
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 13 ~~l~~is~~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p~~G 54 (235)
T cd03299 13 FKLKNVSLEVERG--DYFVILGPTGSGKSVLLETIAGFIKPDSG 54 (235)
T ss_pred ceeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 3789999999999 99999999999999999999998766554
No 487
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.71 E-value=9.3e-08 Score=75.52 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=36.5
Q ss_pred CCCccCCccccCCCC---CceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSN---GVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
....++++++.+.++ ....++|+|+||+|||||+++|+|...+.+|.
T Consensus 6 ~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~ 55 (246)
T cd03237 6 MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD 55 (246)
T ss_pred cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 345667777777632 22899999999999999999999987666554
No 488
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1e-08 Score=82.01 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=39.2
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 23 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 66 (265)
T PRK10575 23 GRTLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66 (265)
T ss_pred CEEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 456899999999999 99999999999999999999998765554
No 489
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.70 E-value=8.9e-09 Score=76.88 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=33.6
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
..++++++|++++| ..++|+|+||+|||||++++++
T Consensus 8 ~~~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 8 VHNLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999 9999999999999999999974
No 490
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.70 E-value=2.2e-08 Score=88.84 Aligned_cols=44 Identities=25% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+++| .+++++|++|+|||||++.|+|...+.+|.
T Consensus 348 ~~~l~~i~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 391 (585)
T TIGR01192 348 SQGVFDVSFEAKAG--QTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391 (585)
T ss_pred CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHccCCCCCCCE
Confidence 45789999999999 999999999999999999999987665554
No 491
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.70 E-value=1.1e-08 Score=81.14 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=39.6
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (252)
T TIGR03005 12 ILTVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPIDEGQ 56 (252)
T ss_pred CeeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 356889999999999 999999999999999999999987665543
No 492
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1e-08 Score=80.37 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=38.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 22 ~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 64 (233)
T PRK11629 22 TDVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64 (233)
T ss_pred eeeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 35899999999999 99999999999999999999998765444
No 493
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.70 E-value=1.5e-08 Score=78.72 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 13 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 57 (218)
T cd03290 13 GLATLSNINIRIPTG--QLTMIVGQVGCGKSSLLLAILGEMQTLEGK 57 (218)
T ss_pred CCcceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCe
Confidence 356899999999999 999999999999999999999987655543
No 494
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.70 E-value=1e-08 Score=82.21 Aligned_cols=44 Identities=27% Similarity=0.318 Sum_probs=39.2
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++.+| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 19 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (269)
T PRK11831 19 NRCIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAPDHG 62 (269)
T ss_pred CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 446789999999999 99999999999999999999998765554
No 495
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.70 E-value=5.1e-08 Score=89.96 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=73.6
Q ss_pred cHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC-----------------cEEEEEeCCCCCCCCCCCcC--CCc
Q 036363 31 GKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG-----------------QVVNVIDTPGLFDFSAGSEF--DEI 91 (240)
Q Consensus 31 GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~~~~~--~~~ 91 (240)
+||||+..|.+....... ..|.|.....+.+.+... ..+.+|||||+..+...... ..+
T Consensus 473 ~KTtLLD~iR~t~v~~~E--aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~a 550 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKE--AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLA 550 (1049)
T ss_pred ccccHHHHHhCCCccccc--CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccC
Confidence 499999999998764432 366777666655544211 13789999999887554333 679
Q ss_pred eEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 92 HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 92 ~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|++++|+++++++..+....+..+... ..|+++++||+|...
T Consensus 551 DivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 551 DLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred CEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 999999999988888887777766532 257999999999653
No 496
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1.3e-08 Score=81.75 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=39.0
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 15 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (274)
T PRK13644 15 TPALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKG 57 (274)
T ss_pred CceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 45899999999999 99999999999999999999998765554
No 497
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.69 E-value=5.7e-09 Score=74.88 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=35.2
Q ss_pred cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++++++.+++| ..++|+|+||+|||||+++|+|...+..+
T Consensus 1 L~~v~~~i~~g--~~~~i~G~nGsGKStLl~~l~g~~~~~~G 40 (137)
T PF00005_consen 1 LKNVSLEIKPG--EIVAIVGPNGSGKSTLLKALAGLLPPDSG 40 (137)
T ss_dssp EEEEEEEEETT--SEEEEEESTTSSHHHHHHHHTTSSHESEE
T ss_pred CCceEEEEcCC--CEEEEEccCCCccccceeeeccccccccc
Confidence 46889999999 99999999999999999999998765433
No 498
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.4e-08 Score=79.93 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=39.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
++.++++++|.+.+| ..++|+|+||+|||||+++|+|...+.+|
T Consensus 17 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G 60 (237)
T PRK11614 17 KIQALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRATSG 60 (237)
T ss_pred CceeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 356899999999999 99999999999999999999998765554
No 499
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.2e-08 Score=81.11 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++.+| ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 17 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~ 61 (255)
T PRK11300 17 GLLAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKPTGGT 61 (255)
T ss_pred CEEEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCcce
Confidence 456889999999999 999999999999999999999987665553
No 500
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.69 E-value=2.4e-08 Score=79.10 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=34.6
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
.+++++|++.+| ..++|+|+||+|||||+++|+|...
T Consensus 11 ~l~~vsl~i~~G--ei~~l~G~nGsGKSTLl~~l~Gl~~ 47 (248)
T PRK03695 11 RLGPLSAEVRAG--EILHLVGPNGAGKSTLLARMAGLLP 47 (248)
T ss_pred eecceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 578999999999 9999999999999999999999764
Done!