Query 036363
Match_columns 240
No_of_seqs 288 out of 2584
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 20:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 99.9 7.5E-25 2.6E-29 171.4 15.1 168 16-189 26-206 (239)
2 3lxw_A GTPase IMAP family memb 99.9 2.3E-23 7.7E-28 163.7 17.7 167 17-189 19-200 (247)
3 2xtp_A GTPase IMAP family memb 99.9 2.1E-21 7.1E-26 153.7 19.9 150 18-172 21-184 (260)
4 3def_A T7I23.11 protein; chlor 99.8 1.4E-19 4.9E-24 143.3 14.7 144 18-164 35-190 (262)
5 1h65_A Chloroplast outer envel 99.8 6.3E-19 2.1E-23 140.2 13.9 141 18-161 38-190 (270)
6 4dhe_A Probable GTP-binding pr 99.8 1.9E-17 6.4E-22 127.7 16.3 118 17-139 27-159 (223)
7 3tw8_B RAS-related protein RAB 99.8 9.3E-17 3.2E-21 119.4 18.1 144 16-174 6-154 (181)
8 2lkc_A Translation initiation 99.8 2.7E-17 9.4E-22 122.1 14.9 113 19-139 8-122 (178)
9 2qu8_A Putative nucleolar GTP- 99.7 1.8E-15 6.2E-20 117.1 23.1 119 18-139 28-157 (228)
10 3t5d_A Septin-7; GTP-binding p 99.7 3.7E-17 1.2E-21 130.2 13.8 145 15-172 4-185 (274)
11 1wf3_A GTP-binding protein; GT 99.7 5.4E-17 1.8E-21 130.7 13.5 115 20-139 8-132 (301)
12 3iev_A GTP-binding protein ERA 99.7 1.5E-16 5.2E-21 128.6 15.1 115 16-137 7-135 (308)
13 1svi_A GTP-binding protein YSX 99.7 6.9E-16 2.4E-20 116.3 17.0 114 17-139 21-149 (195)
14 2gj8_A MNME, tRNA modification 99.7 6E-17 2.1E-21 120.1 10.7 114 20-137 5-128 (172)
15 1z08_A RAS-related protein RAB 99.7 2.7E-16 9.1E-21 115.8 13.6 142 19-174 6-152 (170)
16 4bas_A ADP-ribosylation factor 99.7 1.1E-15 3.8E-20 115.5 17.3 119 16-139 14-142 (199)
17 3oes_A GTPase rhebl1; small GT 99.7 6.4E-16 2.2E-20 117.3 15.9 120 17-139 22-144 (201)
18 2gf9_A RAS-related protein RAB 99.7 3.2E-16 1.1E-20 117.7 14.0 143 18-174 21-168 (189)
19 3t5g_A GTP-binding protein RHE 99.7 6.7E-16 2.3E-20 115.0 15.4 142 18-173 5-151 (181)
20 1m2o_B GTP-binding protein SAR 99.7 2.3E-16 7.7E-21 118.8 12.8 123 6-138 13-138 (190)
21 4dsu_A GTPase KRAS, isoform 2B 99.7 3E-16 1E-20 117.5 13.3 141 19-174 4-149 (189)
22 1g16_A RAS-related protein SEC 99.7 1.7E-16 6E-21 116.7 11.7 113 19-136 3-120 (170)
23 2a5j_A RAS-related protein RAB 99.7 9E-16 3.1E-20 115.5 15.7 143 18-174 20-167 (191)
24 3tkl_A RAS-related protein RAB 99.7 3E-16 1E-20 118.4 12.5 145 16-174 13-162 (196)
25 1z0j_A RAB-22, RAS-related pro 99.7 1.8E-16 6.1E-21 116.7 10.9 115 19-138 6-125 (170)
26 2bcg_Y Protein YP2, GTP-bindin 99.7 4.5E-16 1.5E-20 118.5 13.4 116 19-139 8-128 (206)
27 2dyk_A GTP-binding protein; GT 99.7 4.1E-16 1.4E-20 113.8 12.7 112 20-138 2-122 (161)
28 3iby_A Ferrous iron transport 99.7 2E-16 6.7E-21 124.6 11.4 109 20-138 2-124 (256)
29 3clv_A RAB5 protein, putative; 99.7 1.6E-15 5.5E-20 114.9 16.1 139 19-174 7-187 (208)
30 1z2a_A RAS-related protein RAB 99.7 3.5E-16 1.2E-20 114.8 11.9 140 19-173 5-149 (168)
31 2oil_A CATX-8, RAS-related pro 99.7 9.4E-16 3.2E-20 115.5 14.5 143 19-174 25-171 (193)
32 2fg5_A RAB-22B, RAS-related pr 99.7 3.1E-16 1E-20 118.2 11.7 119 17-138 21-142 (192)
33 1upt_A ARL1, ADP-ribosylation 99.7 2.7E-15 9.4E-20 110.4 16.6 114 19-139 7-123 (171)
34 2efe_B Small GTP-binding prote 99.7 5.1E-16 1.8E-20 115.5 12.7 117 18-139 11-132 (181)
35 1x3s_A RAS-related protein RAB 99.7 1.7E-16 6E-21 119.5 10.2 115 19-137 15-134 (195)
36 1vg8_A RAS-related protein RAB 99.7 1.9E-15 6.4E-20 115.0 15.9 117 18-137 7-130 (207)
37 3pqc_A Probable GTP-binding pr 99.7 1.3E-15 4.3E-20 114.7 14.8 113 17-139 21-148 (195)
38 1ek0_A Protein (GTP-binding pr 99.7 6.6E-17 2.3E-21 118.9 7.4 115 20-139 4-123 (170)
39 1f6b_A SAR1; gtpases, N-termin 99.7 1.5E-16 5.2E-21 120.6 9.4 124 5-138 14-140 (198)
40 1r2q_A RAS-related protein RAB 99.7 3E-16 1E-20 115.4 10.3 116 19-138 6-125 (170)
41 3kkq_A RAS-related protein M-R 99.7 1.4E-15 4.7E-20 113.5 14.1 144 16-173 15-163 (183)
42 2h57_A ADP-ribosylation factor 99.7 4.9E-16 1.7E-20 116.8 11.6 118 18-139 20-141 (190)
43 3llu_A RAS-related GTP-binding 99.7 9E-16 3.1E-20 116.0 13.2 121 15-138 16-143 (196)
44 3cph_A RAS-related protein SEC 99.7 6.3E-16 2.1E-20 118.2 12.3 114 18-136 19-137 (213)
45 1ksh_A ARF-like protein 2; sma 99.7 6.4E-16 2.2E-20 115.7 12.1 115 18-139 17-134 (186)
46 1z06_A RAS-related protein RAB 99.7 5.4E-16 1.8E-20 116.5 11.5 117 18-138 19-141 (189)
47 2bov_A RAla, RAS-related prote 99.7 2.6E-15 8.9E-20 114.0 15.4 143 18-174 13-160 (206)
48 1ega_A Protein (GTP-binding pr 99.7 1.1E-15 3.7E-20 123.2 13.6 111 20-138 9-130 (301)
49 1z0f_A RAB14, member RAS oncog 99.7 3.2E-16 1.1E-20 116.3 9.8 116 18-138 14-134 (179)
50 2h17_A ADP-ribosylation factor 99.7 4.7E-16 1.6E-20 116.0 10.7 114 18-138 20-136 (181)
51 1ky3_A GTP-binding protein YPT 99.7 4.1E-16 1.4E-20 116.0 10.4 119 17-137 6-131 (182)
52 2x77_A ADP-ribosylation factor 99.7 2.2E-15 7.6E-20 113.0 14.2 115 18-139 21-138 (189)
53 2g6b_A RAS-related protein RAB 99.7 2.6E-15 8.7E-20 111.6 14.4 118 18-139 9-131 (180)
54 2nzj_A GTP-binding protein REM 99.7 3.6E-15 1.2E-19 110.2 15.0 116 19-139 4-126 (175)
55 3con_A GTPase NRAS; structural 99.7 8.1E-15 2.8E-19 110.0 17.1 116 18-138 20-140 (190)
56 2y8e_A RAB-protein 6, GH09086P 99.7 5.6E-16 1.9E-20 114.9 10.5 142 19-174 14-160 (179)
57 1zbd_A Rabphilin-3A; G protein 99.7 6.2E-16 2.1E-20 117.4 11.0 142 19-174 8-154 (203)
58 2q3h_A RAS homolog gene family 99.7 6.4E-16 2.2E-20 117.2 11.0 115 17-138 18-138 (201)
59 3i8s_A Ferrous iron transport 99.7 9.8E-16 3.4E-20 121.9 12.4 108 20-137 4-125 (274)
60 3t34_A Dynamin-related protein 99.7 1.8E-15 6.2E-20 125.0 14.3 127 6-140 26-219 (360)
61 4dkx_A RAS-related protein RAB 99.7 8E-16 2.7E-20 118.0 11.3 141 20-174 14-159 (216)
62 2fu5_C RAS-related protein RAB 99.7 4.5E-15 1.5E-19 110.7 15.2 115 19-138 8-127 (183)
63 2fv8_A H6, RHO-related GTP-bin 99.7 3E-16 1E-20 119.7 8.9 125 6-139 14-144 (207)
64 1moz_A ARL1, ADP-ribosylation 99.7 9.8E-16 3.4E-20 114.2 11.5 114 18-138 17-133 (183)
65 2fn4_A P23, RAS-related protei 99.7 3.8E-16 1.3E-20 116.1 9.2 119 15-138 5-128 (181)
66 3q85_A GTP-binding protein REM 99.7 1.3E-15 4.3E-20 112.1 11.9 142 19-173 2-149 (169)
67 2b6h_A ADP-ribosylation factor 99.7 1.6E-15 5.3E-20 114.4 12.6 117 15-138 25-144 (192)
68 3a1s_A Iron(II) transport prot 99.7 2.1E-15 7.1E-20 118.9 13.8 109 19-137 5-123 (258)
69 3q72_A GTP-binding protein RAD 99.7 9.5E-16 3.3E-20 112.4 10.9 115 19-139 2-121 (166)
70 1zj6_A ADP-ribosylation factor 99.6 4.3E-15 1.5E-19 111.3 14.5 113 19-138 16-131 (187)
71 2ce2_X GTPase HRAS; signaling 99.6 1E-15 3.5E-20 111.9 10.7 140 20-174 4-148 (166)
72 3bc1_A RAS-related protein RAB 99.6 1.4E-15 4.9E-20 114.2 11.7 118 18-138 10-141 (195)
73 3k53_A Ferrous iron transport 99.6 1.2E-15 4.1E-20 121.2 11.7 109 20-137 4-122 (271)
74 1kao_A RAP2A; GTP-binding prot 99.6 8.7E-16 3E-20 112.5 9.9 142 19-174 3-149 (167)
75 2bme_A RAB4A, RAS-related prot 99.6 5.8E-16 2E-20 115.8 9.1 116 18-138 9-129 (186)
76 2qag_B Septin-6, protein NEDD5 99.6 4.4E-16 1.5E-20 129.7 9.0 126 7-140 30-192 (427)
77 3gee_A MNME, tRNA modification 99.6 1.3E-15 4.3E-20 129.7 11.7 116 20-140 234-359 (476)
78 1c1y_A RAS-related protein RAP 99.6 4.7E-16 1.6E-20 114.1 7.8 114 19-138 3-122 (167)
79 2atx_A Small GTP binding prote 99.6 2.7E-15 9.1E-20 113.1 12.1 115 18-139 17-137 (194)
80 2erx_A GTP-binding protein DI- 99.6 3.5E-16 1.2E-20 115.3 7.0 117 19-139 3-124 (172)
81 1mky_A Probable GTP-binding pr 99.6 2.5E-15 8.6E-20 127.2 13.2 111 20-137 2-123 (439)
82 1zd9_A ADP-ribosylation factor 99.6 3E-15 1E-19 112.3 12.3 116 18-139 21-139 (188)
83 3r7w_A Gtpase1, GTP-binding pr 99.6 1.2E-15 4.2E-20 123.3 10.8 118 20-138 4-129 (307)
84 1jwy_B Dynamin A GTPase domain 99.6 5.7E-15 1.9E-19 119.8 14.4 117 19-140 24-214 (315)
85 1u8z_A RAS-related protein RAL 99.6 8.4E-16 2.9E-20 112.7 8.6 115 19-138 4-123 (168)
86 1wms_A RAB-9, RAB9, RAS-relate 99.6 1E-15 3.6E-20 113.4 9.2 117 18-137 6-129 (177)
87 2gf0_A GTP-binding protein DI- 99.6 8.2E-16 2.8E-20 116.2 8.6 116 19-138 8-128 (199)
88 4djt_A GTP-binding nuclear pro 99.6 6.5E-16 2.2E-20 118.6 8.2 117 18-138 10-131 (218)
89 2o52_A RAS-related protein RAB 99.6 1.3E-15 4.6E-20 115.5 9.8 142 19-174 25-171 (200)
90 2wji_A Ferrous iron transport 99.6 3.7E-15 1.3E-19 109.5 11.7 108 20-137 4-121 (165)
91 3reg_A RHO-like small GTPase; 99.6 1.1E-15 3.8E-20 115.2 9.1 114 18-138 22-141 (194)
92 2hjg_A GTP-binding protein ENG 99.6 1E-15 3.5E-20 129.5 9.9 116 18-140 174-302 (436)
93 2hxs_A RAB-26, RAS-related pro 99.6 1.3E-15 4.3E-20 113.1 9.1 145 18-174 5-156 (178)
94 3cpj_B GTP-binding protein YPT 99.6 1.9E-15 6.3E-20 116.6 10.3 116 18-138 12-132 (223)
95 2gco_A H9, RHO-related GTP-bin 99.6 2E-15 6.8E-20 114.6 10.2 115 18-139 24-144 (201)
96 2a9k_A RAS-related protein RAL 99.6 4.5E-15 1.6E-19 110.8 11.9 142 18-173 17-163 (187)
97 1r8s_A ADP-ribosylation factor 99.6 1E-15 3.5E-20 112.0 8.0 113 20-139 1-116 (164)
98 3q3j_B RHO-related GTP-binding 99.6 2.5E-15 8.7E-20 115.2 10.5 114 19-138 27-145 (214)
99 3gj0_A GTP-binding nuclear pro 99.6 4.7E-16 1.6E-20 119.8 6.2 118 17-138 13-133 (221)
100 1m7b_A RND3/RHOE small GTP-bin 99.6 1.6E-15 5.5E-20 113.4 9.0 114 18-138 6-125 (184)
101 2il1_A RAB12; G-protein, GDP, 99.6 3.3E-16 1.1E-20 118.1 5.2 117 17-138 24-145 (192)
102 2j1l_A RHO-related GTP-binding 99.6 2.8E-15 9.5E-20 115.0 10.2 115 18-139 33-153 (214)
103 1mh1_A RAC1; GTP-binding, GTPa 99.6 1.9E-15 6.6E-20 112.8 9.0 114 19-139 5-124 (186)
104 2p5s_A RAS and EF-hand domain 99.6 4.6E-16 1.6E-20 117.9 5.5 115 18-137 27-146 (199)
105 1gwn_A RHO-related GTP-binding 99.6 2E-15 6.8E-20 115.1 8.8 120 12-138 21-146 (205)
106 4dcu_A GTP-binding protein ENG 99.6 5.2E-15 1.8E-19 125.9 12.1 116 18-140 194-322 (456)
107 1fzq_A ADP-ribosylation factor 99.6 3.1E-15 1E-19 111.7 9.4 115 18-139 15-132 (181)
108 2j0v_A RAC-like GTP-binding pr 99.6 4.1E-15 1.4E-19 113.7 10.1 113 19-138 9-127 (212)
109 3bwd_D RAC-like GTP-binding pr 99.6 1.5E-15 5.2E-20 113.0 7.4 114 19-138 8-126 (182)
110 2ew1_A RAS-related protein RAB 99.6 1.3E-15 4.4E-20 115.7 7.1 115 19-138 26-145 (201)
111 3geh_A MNME, tRNA modification 99.6 1.4E-15 4.7E-20 129.0 7.9 111 20-139 225-345 (462)
112 3l0i_B RAS-related protein RAB 99.6 3.5E-16 1.2E-20 118.6 3.8 117 17-138 31-152 (199)
113 4gzl_A RAS-related C3 botulinu 99.6 5E-15 1.7E-19 112.7 10.1 116 17-139 28-149 (204)
114 1mky_A Probable GTP-binding pr 99.6 1.3E-14 4.3E-19 122.9 13.2 114 19-139 180-307 (439)
115 2atv_A RERG, RAS-like estrogen 99.6 1.1E-14 3.8E-19 109.9 11.6 115 18-138 27-146 (196)
116 3dz8_A RAS-related protein RAB 99.6 6.9E-16 2.4E-20 116.1 4.9 118 18-138 22-142 (191)
117 3cbq_A GTP-binding protein REM 99.6 6.2E-15 2.1E-19 111.4 10.1 120 16-139 20-145 (195)
118 2wjg_A FEOB, ferrous iron tran 99.6 1E-14 3.6E-19 109.1 11.1 135 19-173 7-151 (188)
119 2fh5_B SR-beta, signal recogni 99.6 4.8E-15 1.6E-19 113.4 9.2 114 19-139 7-130 (214)
120 2yc2_C IFT27, small RAB-relate 99.6 5.6E-15 1.9E-19 112.3 9.4 117 19-138 20-146 (208)
121 3o47_A ADP-ribosylation factor 99.6 4.1E-14 1.4E-18 115.4 15.0 114 19-139 165-281 (329)
122 4dcu_A GTP-binding protein ENG 99.6 1.8E-15 6.3E-20 128.7 7.1 112 20-138 24-145 (456)
123 2hup_A RAS-related protein RAB 99.6 1.9E-15 6.6E-20 114.7 6.5 115 19-138 29-148 (201)
124 1pui_A ENGB, probable GTP-bind 99.6 6.5E-14 2.2E-18 106.7 15.1 117 12-139 21-152 (210)
125 3b1v_A Ferrous iron uptake tra 99.6 9.2E-15 3.2E-19 115.9 10.5 108 19-137 3-120 (272)
126 3c5c_A RAS-like protein 12; GD 99.6 8.7E-15 3E-19 109.8 9.9 117 18-138 20-141 (187)
127 2ged_A SR-beta, signal recogni 99.6 6.4E-15 2.2E-19 110.8 9.0 116 18-140 47-172 (193)
128 3qq5_A Small GTP-binding prote 99.6 5.8E-15 2E-19 123.7 9.6 117 15-140 30-156 (423)
129 2f7s_A C25KG, RAS-related prot 99.6 4.4E-15 1.5E-19 113.9 8.2 144 19-175 25-183 (217)
130 2hjg_A GTP-binding protein ENG 99.6 1.9E-15 6.3E-20 127.9 6.6 112 20-138 4-125 (436)
131 2qag_C Septin-7; cell cycle, c 99.6 2.2E-14 7.5E-19 119.9 13.0 117 17-139 29-182 (418)
132 1zun_B Sulfate adenylate trans 99.6 1.3E-14 4.4E-19 122.7 11.6 117 17-138 22-171 (434)
133 3tr5_A RF-3, peptide chain rel 99.6 2.8E-15 9.6E-20 129.1 7.6 116 18-139 12-149 (528)
134 1xzp_A Probable tRNA modificat 99.6 5.7E-15 2E-19 125.7 9.3 110 20-138 244-364 (482)
135 3t1o_A Gliding protein MGLA; G 99.6 5.6E-15 1.9E-19 111.3 8.2 121 18-138 13-149 (198)
136 3ihw_A Centg3; RAS, centaurin, 99.6 1.6E-14 5.5E-19 108.1 10.5 113 16-137 17-132 (184)
137 2j69_A Bacterial dynamin-like 99.6 3.2E-14 1.1E-18 126.4 13.9 116 19-138 69-244 (695)
138 2iwr_A Centaurin gamma 1; ANK 99.6 1.4E-14 4.7E-19 107.5 9.5 111 19-137 7-121 (178)
139 2e87_A Hypothetical protein PH 99.6 1E-13 3.5E-18 114.3 15.6 114 19-138 167-294 (357)
140 3p26_A Elongation factor 1 alp 99.6 1.5E-14 5.1E-19 123.8 10.6 117 18-139 32-186 (483)
141 3j2k_7 ERF3, eukaryotic polype 99.6 2.1E-14 7.2E-19 121.4 11.0 117 17-138 15-169 (439)
142 2qag_A Septin-2, protein NEDD5 99.5 1.8E-14 6E-19 118.9 9.6 117 17-139 35-189 (361)
143 3izq_1 HBS1P, elongation facto 99.5 2E-14 6.9E-19 125.9 10.1 117 18-139 166-320 (611)
144 2x2e_A Dynamin-1; nitration, h 99.5 4.5E-13 1.5E-17 110.3 17.4 115 20-139 32-212 (353)
145 3vqt_A RF-3, peptide chain rel 99.5 1.4E-14 4.9E-19 125.3 8.8 116 18-139 30-167 (548)
146 2h5e_A Peptide chain release f 99.5 3.6E-14 1.2E-18 122.3 10.9 116 18-139 12-149 (529)
147 2f9l_A RAB11B, member RAS onco 99.5 4.5E-14 1.5E-18 106.9 9.8 114 19-137 5-123 (199)
148 2zej_A Dardarin, leucine-rich 99.5 1.2E-14 4.1E-19 108.7 6.4 114 20-137 3-125 (184)
149 3izy_P Translation initiation 99.5 1.3E-15 4.5E-20 130.8 1.1 112 20-138 5-118 (537)
150 2qtf_A Protein HFLX, GTP-bindi 99.5 8E-14 2.8E-18 114.9 11.7 116 20-139 180-307 (364)
151 1wb1_A Translation elongation 99.5 1.5E-14 5E-19 123.6 7.0 114 19-138 19-139 (482)
152 3sop_A Neuronal-specific septi 99.5 5.5E-14 1.9E-18 111.3 9.7 139 20-171 3-180 (270)
153 2c78_A Elongation factor TU-A; 99.5 2.1E-14 7.2E-19 120.4 7.4 116 18-138 10-142 (405)
154 3lvq_E ARF-GAP with SH3 domain 99.5 1.3E-13 4.3E-18 118.7 12.3 113 19-138 322-437 (497)
155 2xex_A Elongation factor G; GT 99.5 2.4E-14 8.1E-19 127.3 8.0 117 17-139 8-142 (693)
156 1zo1_I IF2, translation initia 99.5 5.6E-15 1.9E-19 125.9 3.5 111 20-138 5-117 (501)
157 1jny_A EF-1-alpha, elongation 99.5 2.5E-14 8.4E-19 121.0 7.2 116 18-138 5-158 (435)
158 2aka_B Dynamin-1; fusion prote 99.5 9.2E-13 3.1E-17 105.9 16.1 116 19-139 26-207 (299)
159 2cjw_A GTP-binding protein GEM 99.5 9.4E-14 3.2E-18 104.6 9.6 116 19-138 6-128 (192)
160 1d2e_A Elongation factor TU (E 99.5 3E-14 1E-18 119.1 7.5 115 19-138 3-133 (397)
161 1dar_A EF-G, elongation factor 99.5 2.9E-14 9.8E-19 126.7 7.7 119 15-139 8-144 (691)
162 3th5_A RAS-related C3 botulinu 99.2 2.1E-15 7.1E-20 114.7 0.0 116 17-138 28-148 (204)
163 1oix_A RAS-related protein RAB 99.5 1.5E-13 5.1E-18 103.4 10.1 114 19-137 29-147 (191)
164 1s0u_A EIF-2-gamma, translatio 99.5 1.6E-13 5.5E-18 115.1 11.0 119 17-139 6-150 (408)
165 1nrj_B SR-beta, signal recogni 99.5 8.4E-14 2.9E-18 106.8 8.6 116 18-140 11-136 (218)
166 4a9a_A Ribosome-interacting GT 99.5 1.2E-13 4E-18 113.7 9.8 124 9-137 62-195 (376)
167 2g3y_A GTP-binding protein GEM 99.5 5.9E-14 2E-18 107.3 7.4 117 18-138 36-159 (211)
168 1g7s_A Translation initiation 99.5 1.1E-13 3.8E-18 120.5 9.4 112 20-138 6-136 (594)
169 1f60_A Elongation factor EEF1A 99.5 1.6E-14 5.4E-19 122.8 4.0 115 19-138 7-159 (458)
170 3zvr_A Dynamin-1; hydrolase, D 99.5 3.9E-12 1.3E-16 112.9 19.2 116 20-140 52-233 (772)
171 3mca_A HBS1, elongation factor 99.5 1.4E-14 4.7E-19 126.5 3.6 117 17-138 175-329 (592)
172 2rdo_7 EF-G, elongation factor 99.5 2.2E-13 7.4E-18 121.3 11.2 117 17-139 8-149 (704)
173 1kk1_A EIF2gamma; initiation o 99.5 7.2E-14 2.5E-18 117.3 7.6 119 17-139 8-152 (410)
174 3sjy_A Translation initiation 99.5 2.3E-13 7.9E-18 113.9 10.7 117 18-139 7-144 (403)
175 1lnz_A SPO0B-associated GTP-bi 99.5 5.5E-14 1.9E-18 114.8 6.6 116 21-138 160-288 (342)
176 2elf_A Protein translation elo 99.5 7.2E-14 2.5E-18 115.4 7.0 101 20-136 22-125 (370)
177 2wkq_A NPH1-1, RAS-related C3 99.4 5.2E-13 1.8E-17 108.7 10.7 112 20-138 156-273 (332)
178 2dy1_A Elongation factor G; tr 99.4 1.6E-13 5.3E-18 121.6 7.6 117 13-137 5-139 (665)
179 2qpt_A EH domain-containing pr 99.4 4.2E-13 1.4E-17 116.2 10.1 114 18-139 64-233 (550)
180 3cb4_D GTP-binding protein LEP 99.4 1.1E-13 3.6E-18 120.6 6.3 116 19-139 4-138 (599)
181 2ywe_A GTP-binding protein LEP 99.4 1.3E-13 4.6E-18 119.8 6.9 117 18-139 5-140 (600)
182 1r5b_A Eukaryotic peptide chai 99.4 2.3E-13 7.7E-18 116.0 8.1 117 17-138 41-195 (467)
183 3r7w_B Gtpase2, GTP-binding pr 99.4 3.5E-13 1.2E-17 108.5 8.7 115 21-139 1-121 (331)
184 3dpu_A RAB family protein; roc 99.4 7E-13 2.4E-17 115.0 9.7 117 18-139 40-165 (535)
185 1n0u_A EF-2, elongation factor 99.4 2.3E-13 7.8E-18 123.3 5.6 115 18-137 18-163 (842)
186 1wxq_A GTP-binding protein; st 99.4 3.6E-12 1.2E-16 106.1 12.3 81 20-103 1-114 (397)
187 3j25_A Tetracycline resistance 99.4 4.6E-14 1.6E-18 124.4 0.7 116 19-140 2-135 (638)
188 2qnr_A Septin-2, protein NEDD5 99.4 8.8E-13 3E-17 106.1 8.0 140 20-172 19-196 (301)
189 4fn5_A EF-G 1, elongation fact 99.4 7.1E-13 2.4E-17 118.3 8.0 118 17-139 11-152 (709)
190 1udx_A The GTP-binding protein 99.4 2.8E-12 9.5E-17 107.1 10.7 124 8-137 148-282 (416)
191 2cxx_A Probable GTP-binding pr 99.4 2.4E-12 8.2E-17 96.2 9.3 57 20-83 2-58 (190)
192 3avx_A Elongation factor TS, e 99.4 1.1E-12 3.7E-17 120.1 8.1 116 18-138 295-426 (1289)
193 3c5h_A Glucocorticoid receptor 99.2 8.8E-12 3E-16 98.0 5.3 47 90-137 162-211 (255)
194 2p67_A LAO/AO transport system 99.1 1.4E-10 4.8E-15 94.9 8.6 120 6-138 45-208 (341)
195 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.7E-10 5.8E-15 95.5 9.1 85 13-101 16-126 (392)
196 1tq4_A IIGP1, interferon-induc 99.1 4.6E-11 1.6E-15 99.6 5.0 125 6-137 38-188 (413)
197 3szr_A Interferon-induced GTP- 99.1 5.4E-10 1.8E-14 98.0 11.7 29 21-49 47-76 (608)
198 1jal_A YCHF protein; nucleotid 99.1 5.6E-11 1.9E-15 97.3 4.9 80 20-102 3-108 (363)
199 3ec1_A YQEH GTPase; atnos1, at 99.1 2.7E-12 9.2E-17 106.1 -3.3 110 20-139 163-289 (369)
200 2ohf_A Protein OLA1, GTP-bindi 99.1 9.5E-11 3.3E-15 96.9 5.6 86 13-102 18-128 (396)
201 3h2y_A GTPase family protein; 99.1 5.7E-12 2E-16 104.0 -1.8 111 20-139 161-288 (368)
202 2qm8_A GTPase/ATPase; G protei 99.1 5.7E-12 1.9E-16 102.9 -2.9 36 5-42 43-78 (337)
203 2dby_A GTP-binding protein; GD 99.0 2.9E-10 1E-14 93.5 6.5 81 20-102 2-111 (368)
204 3p32_A Probable GTPase RV1496/ 99.0 2.4E-09 8.1E-14 88.1 11.6 61 67-137 170-230 (355)
205 3rlf_A Maltose/maltodextrin im 99.0 1.4E-10 4.8E-15 95.5 3.4 46 2-49 14-59 (381)
206 3fvq_A Fe(3+) IONS import ATP- 99.0 2E-10 6.7E-15 93.9 3.6 46 2-49 15-60 (359)
207 3tui_C Methionine import ATP-b 99.0 1.2E-09 4.3E-14 89.3 7.6 43 5-49 42-84 (366)
208 2www_A Methylmalonic aciduria 99.0 6.2E-10 2.1E-14 91.3 5.7 61 67-137 165-225 (349)
209 1g29_1 MALK, maltose transport 98.9 4.8E-10 1.6E-14 92.4 4.2 47 2-50 14-60 (372)
210 2yyz_A Sugar ABC transporter, 98.9 3.2E-10 1.1E-14 92.9 2.9 46 2-49 14-59 (359)
211 1z47_A CYSA, putative ABC-tran 98.9 3E-10 1E-14 92.8 2.6 46 2-49 26-71 (355)
212 1f5n_A Interferon-induced guan 98.9 1.7E-09 5.8E-14 93.8 7.3 99 17-117 36-147 (592)
213 2pze_A Cystic fibrosis transme 98.9 1.3E-09 4.6E-14 84.1 5.9 44 3-48 20-63 (229)
214 2pcj_A ABC transporter, lipopr 98.9 4.2E-10 1.4E-14 86.6 2.0 45 3-49 16-60 (224)
215 1v43_A Sugar-binding transport 98.9 4.6E-10 1.6E-14 92.3 2.4 45 3-49 23-67 (372)
216 1mv5_A LMRA, multidrug resista 98.9 1E-09 3.5E-14 85.5 4.1 45 3-49 14-58 (243)
217 4g1u_C Hemin import ATP-bindin 98.9 5E-10 1.7E-14 88.3 2.3 46 2-49 22-67 (266)
218 1g6h_A High-affinity branched- 98.9 5.3E-10 1.8E-14 87.8 2.3 46 2-49 18-63 (257)
219 1puj_A YLQF, conserved hypothe 98.9 3E-09 1E-13 84.6 6.7 60 19-83 120-179 (282)
220 1oxx_K GLCV, glucose, ABC tran 98.9 5.3E-10 1.8E-14 91.5 2.3 43 6-50 20-62 (353)
221 1b0u_A Histidine permease; ABC 98.9 6.1E-10 2.1E-14 87.7 2.6 46 2-49 17-62 (262)
222 2olj_A Amino acid ABC transpor 98.9 6.6E-10 2.3E-14 87.4 2.6 45 3-49 36-80 (263)
223 2nq2_C Hypothetical ABC transp 98.9 1.1E-09 3.7E-14 85.8 3.6 45 3-49 17-61 (253)
224 1vpl_A ABC transporter, ATP-bi 98.9 7.3E-10 2.5E-14 86.9 2.6 45 3-49 27-71 (256)
225 3gfo_A Cobalt import ATP-bindi 98.8 7.9E-10 2.7E-14 87.5 2.3 44 4-49 21-64 (275)
226 3tif_A Uncharacterized ABC tra 98.8 8.7E-10 3E-14 85.4 2.5 43 5-49 19-61 (235)
227 2cbz_A Multidrug resistance-as 98.8 1.1E-09 3.7E-14 85.0 2.9 45 3-49 17-61 (237)
228 1ji0_A ABC transporter; ATP bi 98.8 7.5E-10 2.6E-14 86.1 2.0 45 3-49 18-62 (240)
229 2ff7_A Alpha-hemolysin translo 98.8 9.2E-10 3.1E-14 85.9 2.4 45 3-49 21-65 (247)
230 2ihy_A ABC transporter, ATP-bi 98.8 8.2E-10 2.8E-14 87.7 2.1 45 3-49 33-77 (279)
231 1sgw_A Putative ABC transporte 98.8 8.2E-10 2.8E-14 84.2 1.7 43 5-49 23-65 (214)
232 2ixe_A Antigen peptide transpo 98.8 1.9E-09 6.6E-14 85.2 3.4 44 4-49 32-75 (271)
233 2j37_W Signal recognition part 98.8 1.3E-08 4.4E-13 86.9 8.1 114 17-138 99-254 (504)
234 3b5x_A Lipid A export ATP-bind 98.8 6.8E-09 2.3E-13 90.8 5.9 44 4-49 356-399 (582)
235 2yz2_A Putative ABC transporte 98.8 2.1E-09 7.3E-14 84.8 2.5 44 4-49 20-63 (266)
236 2d2e_A SUFC protein; ABC-ATPas 98.8 1.7E-09 5.9E-14 84.5 1.6 38 3-42 15-52 (250)
237 2zu0_C Probable ATP-dependent 98.7 2.3E-09 8E-14 84.6 2.2 39 3-43 32-70 (267)
238 2yhs_A FTSY, cell division pro 98.7 3.2E-09 1.1E-13 89.8 3.1 145 7-173 283-474 (503)
239 3nh6_A ATP-binding cassette SU 98.7 2.2E-09 7.4E-14 86.1 1.9 45 3-49 66-110 (306)
240 4a82_A Cystic fibrosis transme 98.7 1E-09 3.6E-14 95.8 -0.1 44 4-49 354-397 (578)
241 3b9q_A Chloroplast SRP recepto 98.7 7.3E-09 2.5E-13 83.1 4.8 144 8-173 91-282 (302)
242 3cnl_A YLQF, putative uncharac 98.7 7.4E-09 2.5E-13 81.4 4.6 60 20-84 100-159 (262)
243 3qf4_B Uncharacterized ABC tra 98.7 2.6E-09 8.9E-14 93.7 2.1 44 4-49 368-411 (598)
244 2it1_A 362AA long hypothetical 98.7 4.1E-09 1.4E-13 86.4 3.0 46 2-49 14-59 (362)
245 1t9h_A YLOQ, probable GTPase E 98.7 4E-09 1.4E-13 84.5 2.9 65 12-83 168-238 (307)
246 1htw_A HI0065; nucleotide-bind 98.7 2.2E-09 7.4E-14 77.9 1.1 43 5-50 21-63 (158)
247 2qi9_C Vitamin B12 import ATP- 98.7 4.1E-09 1.4E-13 82.3 2.5 40 5-46 14-53 (249)
248 2bbs_A Cystic fibrosis transme 98.7 5E-09 1.7E-13 83.5 3.0 44 4-49 51-94 (290)
249 3qf4_A ABC transporter, ATP-bi 98.7 2.2E-09 7.4E-14 93.9 0.7 45 3-49 355-399 (587)
250 2og2_A Putative signal recogni 98.7 1.3E-08 4.6E-13 83.3 4.7 144 8-173 148-339 (359)
251 2ghi_A Transport protein; mult 98.7 7.6E-09 2.6E-13 81.3 3.1 40 4-45 33-72 (260)
252 3d31_A Sulfate/molybdate ABC t 98.7 5.9E-09 2E-13 85.1 2.2 42 6-49 15-56 (348)
253 2pjz_A Hypothetical protein ST 98.7 5.8E-09 2E-13 82.0 1.7 42 4-49 18-59 (263)
254 2wsm_A Hydrogenase expression/ 98.6 1.1E-08 3.8E-13 78.2 3.0 24 19-42 30-53 (221)
255 1yrb_A ATP(GTP)binding protein 98.6 1.4E-08 4.9E-13 79.7 2.9 68 69-138 109-185 (262)
256 3gd7_A Fusion complex of cysti 98.6 1.4E-08 4.9E-13 84.0 3.0 41 2-44 32-72 (390)
257 2yv5_A YJEQ protein; hydrolase 98.6 4.1E-08 1.4E-12 78.9 5.3 60 20-82 166-229 (302)
258 1z6g_A Guanylate kinase; struc 98.6 1.4E-08 4.9E-13 77.7 2.3 37 5-43 11-47 (218)
259 2jeo_A Uridine-cytidine kinase 98.6 2E-08 6.8E-13 78.2 3.2 39 2-42 10-48 (245)
260 3ohm_A Guanine nucleotide-bind 98.6 1.5E-07 5.2E-12 76.0 7.9 79 58-137 157-247 (327)
261 1cip_A Protein (guanine nucleo 98.5 1.2E-07 4E-12 77.7 6.6 76 59-137 184-273 (353)
262 1rj9_A FTSY, signal recognitio 98.5 6.9E-08 2.3E-12 77.5 5.0 136 18-173 101-283 (304)
263 3dm5_A SRP54, signal recogniti 98.5 9.2E-07 3.1E-11 74.1 11.8 113 18-137 99-252 (443)
264 3kl4_A SRP54, signal recogniti 98.5 3.1E-07 1.1E-11 76.9 9.0 112 19-137 97-251 (433)
265 1u0l_A Probable GTPase ENGC; p 98.5 4E-08 1.4E-12 78.9 2.8 59 20-82 170-234 (301)
266 3e70_C DPA, signal recognition 98.5 6.5E-08 2.2E-12 78.4 4.0 134 20-173 130-304 (328)
267 2onk_A Molybdate/tungstate ABC 98.5 4.2E-08 1.4E-12 76.1 2.7 41 6-49 14-54 (240)
268 3g5u_A MCG1178, multidrug resi 98.5 2.5E-08 8.5E-13 94.4 0.5 44 4-49 403-446 (1284)
269 3bk7_A ABC transporter ATP-bin 98.5 7.2E-07 2.5E-11 78.1 9.6 42 7-50 372-413 (607)
270 4fid_A G protein alpha subunit 98.5 2.1E-07 7.3E-12 75.5 5.8 77 59-137 152-241 (340)
271 3b60_A Lipid A export ATP-bind 98.4 8E-08 2.8E-12 84.0 3.4 44 4-49 356-399 (582)
272 2v9p_A Replication protein E1; 98.4 4E-08 1.4E-12 78.7 1.2 36 6-43 115-150 (305)
273 4gp7_A Metallophosphoesterase; 98.4 7.5E-08 2.6E-12 70.8 2.6 31 9-41 1-31 (171)
274 2rcn_A Probable GTPase ENGC; Y 98.4 8.2E-08 2.8E-12 78.4 3.1 59 20-82 216-281 (358)
275 2v3c_C SRP54, signal recogniti 98.4 1.2E-07 4E-12 79.7 3.8 114 17-138 97-252 (432)
276 1yqt_A RNAse L inhibitor; ATP- 98.4 2E-07 6.9E-12 80.6 5.0 41 6-49 37-77 (538)
277 1znw_A Guanylate kinase, GMP k 98.4 1.1E-07 3.8E-12 72.0 2.9 36 4-43 9-44 (207)
278 2yl4_A ATP-binding cassette SU 98.4 7.7E-08 2.6E-12 84.4 1.8 43 5-49 358-400 (595)
279 3lnc_A Guanylate kinase, GMP k 98.4 8.7E-08 3E-12 73.9 1.7 37 5-43 15-52 (231)
280 4f4c_A Multidrug resistance pr 98.4 3.2E-08 1.1E-12 93.9 -1.1 45 3-49 430-474 (1321)
281 3g5u_A MCG1178, multidrug resi 98.4 9.6E-08 3.3E-12 90.5 2.0 43 5-49 1047-1089(1284)
282 3bk7_A ABC transporter ATP-bin 98.3 3.5E-07 1.2E-11 80.0 5.0 41 6-49 107-147 (607)
283 2iw3_A Elongation factor 3A; a 98.3 1.1E-07 3.7E-12 86.8 1.5 44 4-49 686-729 (986)
284 3q5d_A Atlastin-1; G protein, 98.3 5.6E-07 1.9E-11 75.6 5.3 27 16-42 64-90 (447)
285 1j8m_F SRP54, signal recogniti 98.3 8.4E-07 2.9E-11 70.9 5.0 118 10-137 92-252 (297)
286 3tr0_A Guanylate kinase, GMP k 98.2 5E-07 1.7E-11 68.0 3.1 30 12-43 2-31 (205)
287 4f4c_A Multidrug resistance pr 98.2 8.1E-08 2.8E-12 91.2 -1.8 44 4-49 1092-1135(1321)
288 1yqt_A RNAse L inhibitor; ATP- 98.2 5.9E-07 2E-11 77.7 3.3 43 7-51 302-344 (538)
289 3ozx_A RNAse L inhibitor; ATP 98.2 1.2E-06 4.2E-11 75.6 5.3 43 6-50 13-56 (538)
290 2iw3_A Elongation factor 3A; a 98.2 2.8E-07 9.5E-12 84.1 1.0 39 2-42 446-484 (986)
291 3thx_A DNA mismatch repair pro 98.2 3.1E-06 1.1E-10 77.3 7.8 35 3-39 648-682 (934)
292 2eyu_A Twitching motility prot 98.2 5.3E-07 1.8E-11 70.8 2.4 37 5-45 15-51 (261)
293 2gza_A Type IV secretion syste 98.2 2.5E-07 8.5E-12 76.1 0.5 38 8-47 166-203 (361)
294 3euj_A Chromosome partition pr 98.2 5.7E-07 2E-11 76.2 2.4 44 4-50 17-60 (483)
295 3ozx_A RNAse L inhibitor; ATP 98.2 7.9E-07 2.7E-11 76.8 3.1 41 8-50 285-325 (538)
296 2hf9_A Probable hydrogenase ni 98.2 2.5E-06 8.4E-11 65.2 5.6 24 19-42 38-61 (226)
297 3thx_B DNA mismatch repair pro 98.2 2E-06 6.8E-11 78.4 5.7 37 3-41 659-695 (918)
298 2obl_A ESCN; ATPase, hydrolase 98.2 3E-07 1E-11 75.1 0.3 40 3-45 58-97 (347)
299 2pt7_A CAG-ALFA; ATPase, prote 98.1 1.9E-07 6.3E-12 75.9 -1.2 40 6-47 160-199 (330)
300 2dpy_A FLII, flagellum-specifi 98.1 5.5E-07 1.9E-11 75.8 1.4 41 3-46 144-184 (438)
301 3b85_A Phosphate starvation-in 98.1 5.7E-07 1.9E-11 68.1 1.0 33 15-50 20-52 (208)
302 3j16_B RLI1P; ribosome recycli 98.1 1.4E-06 4.8E-11 76.2 3.4 44 6-49 362-408 (608)
303 1zp6_A Hypothetical protein AT 98.1 2.4E-06 8.3E-11 63.5 4.2 28 13-42 5-32 (191)
304 2npi_A Protein CLP1; CLP1-PCF1 98.1 5.5E-07 1.9E-11 76.3 0.6 38 9-48 130-167 (460)
305 1lvg_A Guanylate kinase, GMP k 98.1 1.1E-06 3.7E-11 66.1 2.1 24 20-43 5-28 (198)
306 3vaa_A Shikimate kinase, SK; s 98.1 2E-06 6.8E-11 64.6 3.5 36 4-41 12-47 (199)
307 1ye8_A Protein THEP1, hypothet 98.1 1.4E-06 4.9E-11 64.3 2.7 23 21-43 2-24 (178)
308 3j16_B RLI1P; ribosome recycli 98.1 3.4E-06 1.2E-10 73.8 5.2 36 13-50 99-134 (608)
309 2xxa_A Signal recognition part 98.1 5.7E-06 1.9E-10 69.5 6.2 114 17-137 98-253 (433)
310 1s96_A Guanylate kinase, GMP k 98.1 1.9E-06 6.3E-11 65.9 3.0 29 14-44 13-41 (219)
311 2ffh_A Protein (FFH); SRP54, s 98.1 2.4E-06 8.4E-11 71.4 3.9 31 8-42 91-121 (425)
312 3a00_A Guanylate kinase, GMP k 98.0 1.2E-06 4.1E-11 65.1 1.6 25 20-44 2-26 (186)
313 1lw7_A Transcriptional regulat 98.0 2E-06 6.7E-11 70.9 2.6 38 7-46 158-197 (365)
314 3asz_A Uridine kinase; cytidin 98.0 2.6E-06 9.1E-11 64.4 3.1 28 14-43 3-30 (211)
315 3ux8_A Excinuclease ABC, A sub 98.0 2.1E-06 7.2E-11 76.3 2.8 31 4-36 31-61 (670)
316 3ux8_A Excinuclease ABC, A sub 98.0 1.5E-06 5.2E-11 77.2 1.7 34 5-40 336-369 (670)
317 2j41_A Guanylate kinase; GMP, 98.0 3.3E-06 1.1E-10 63.5 3.2 30 12-43 1-30 (207)
318 3aez_A Pantothenate kinase; tr 98.0 4.8E-06 1.6E-10 67.0 3.9 30 14-45 87-116 (312)
319 1kgd_A CASK, peripheral plasma 98.0 3.7E-06 1.3E-10 62.1 3.0 24 20-43 6-29 (180)
320 3c8u_A Fructokinase; YP_612366 98.0 3.6E-06 1.2E-10 63.7 2.9 28 15-44 20-47 (208)
321 3ney_A 55 kDa erythrocyte memb 97.9 4.3E-06 1.5E-10 62.6 3.2 31 11-43 13-43 (197)
322 4ido_A Atlastin-1; GTPase, GTP 97.9 5.1E-05 1.7E-09 63.6 9.5 118 16-135 64-220 (457)
323 1cr0_A DNA primase/helicase; R 97.9 2.9E-06 1E-10 67.7 2.0 39 4-44 22-60 (296)
324 2oap_1 GSPE-2, type II secreti 97.9 1.3E-06 4.4E-11 74.9 -0.4 39 6-46 249-287 (511)
325 4eun_A Thermoresistant glucoki 97.9 5.5E-06 1.9E-10 62.2 3.0 29 12-42 24-52 (200)
326 3nwj_A ATSK2; P loop, shikimat 97.9 1.1E-06 3.9E-11 68.4 -1.0 37 3-41 31-70 (250)
327 1tf7_A KAIC; homohexamer, hexa 97.9 3.4E-06 1.2E-10 72.8 1.6 40 2-43 23-65 (525)
328 1wb9_A DNA mismatch repair pro 97.8 6.4E-06 2.2E-10 74.2 3.1 38 2-42 593-630 (800)
329 3uie_A Adenylyl-sulfate kinase 97.8 4.6E-06 1.6E-10 62.7 1.6 34 8-43 16-49 (200)
330 2i3b_A HCR-ntpase, human cance 97.8 6.7E-06 2.3E-10 61.3 2.3 28 20-48 2-29 (189)
331 1sq5_A Pantothenate kinase; P- 97.8 3.1E-06 1.1E-10 68.1 0.5 27 15-43 78-104 (308)
332 2ehv_A Hypothetical protein PH 97.8 1.2E-05 4E-10 62.3 3.7 26 13-40 26-51 (251)
333 4a74_A DNA repair and recombin 97.8 7.5E-06 2.6E-10 62.6 2.2 29 13-43 21-49 (231)
334 2bbw_A Adenylate kinase 4, AK4 97.8 1.2E-05 4.3E-10 62.3 3.5 28 20-47 28-58 (246)
335 3tau_A Guanylate kinase, GMP k 97.8 1.3E-05 4.6E-10 60.5 3.5 28 15-44 6-33 (208)
336 3kta_A Chromosome segregation 97.8 1.1E-05 3.9E-10 59.4 3.0 33 8-43 18-50 (182)
337 2x8a_A Nuclear valosin-contain 97.8 3.1E-06 1.1E-10 66.9 -0.4 35 5-43 34-68 (274)
338 3ec2_A DNA replication protein 97.8 7.9E-06 2.7E-10 60.2 1.9 30 13-44 34-63 (180)
339 4e22_A Cytidylate kinase; P-lo 97.8 1.3E-05 4.4E-10 62.5 3.2 28 20-47 28-58 (252)
340 1ewq_A DNA mismatch repair pro 97.7 1.3E-05 4.6E-10 71.8 2.9 36 3-43 565-600 (765)
341 1svm_A Large T antigen; AAA+ f 97.7 7.9E-06 2.7E-10 67.3 1.3 35 6-42 158-192 (377)
342 4aby_A DNA repair protein RECN 97.7 4.4E-06 1.5E-10 69.9 -0.3 35 5-42 49-83 (415)
343 2ewv_A Twitching motility prot 97.7 1.7E-05 5.7E-10 65.5 2.9 29 14-44 133-161 (372)
344 2vp4_A Deoxynucleoside kinase; 97.7 2.3E-05 7.9E-10 60.2 3.5 31 10-42 13-43 (230)
345 1zcb_A G alpha I/13; GTP-bindi 97.7 0.0001 3.6E-09 60.4 7.5 79 57-137 190-281 (362)
346 1knq_A Gluconate kinase; ALFA/ 97.7 2.8E-05 9.7E-10 56.8 3.6 22 20-41 9-30 (175)
347 2bdt_A BH3686; alpha-beta prot 97.7 2.1E-05 7E-10 58.4 2.8 22 20-41 3-24 (189)
348 3jvv_A Twitching mobility prot 97.7 1.4E-05 4.7E-10 65.5 1.9 31 13-45 119-149 (356)
349 2o8b_B DNA mismatch repair pro 97.6 2.4E-05 8.2E-10 72.3 3.4 39 2-43 767-812 (1022)
350 1y63_A LMAJ004144AAA protein; 97.6 3.6E-05 1.2E-09 56.9 3.8 32 9-42 2-33 (184)
351 1azs_C GS-alpha; complex (lyas 97.6 0.00011 3.9E-09 60.8 6.9 78 58-137 207-297 (402)
352 1p9r_A General secretion pathw 97.6 2.5E-05 8.4E-10 65.3 2.6 26 20-45 168-193 (418)
353 2w0m_A SSO2452; RECA, SSPF, un 97.6 1.7E-05 5.7E-10 60.6 1.4 35 6-42 11-46 (235)
354 1ixz_A ATP-dependent metallopr 97.6 1.9E-05 6.5E-10 61.5 1.6 34 6-43 40-73 (254)
355 1kag_A SKI, shikimate kinase I 97.5 2.9E-05 1E-09 56.6 2.1 24 20-43 5-28 (173)
356 2qt1_A Nicotinamide riboside k 97.5 8.3E-05 2.8E-09 55.9 4.5 32 10-43 14-45 (207)
357 2f1r_A Molybdopterin-guanine d 97.5 2E-05 7E-10 57.6 1.0 25 20-44 3-27 (171)
358 3qf7_A RAD50; ABC-ATPase, ATPa 97.5 2.1E-05 7.3E-10 64.7 1.3 31 7-40 14-44 (365)
359 1iy2_A ATP-dependent metallopr 97.5 2.6E-05 8.9E-10 61.6 1.6 34 6-43 64-97 (278)
360 3tqc_A Pantothenate kinase; bi 97.5 5.9E-05 2E-09 60.7 3.5 27 17-43 90-116 (321)
361 1jjv_A Dephospho-COA kinase; P 97.5 7.5E-05 2.6E-09 56.1 3.6 22 20-41 3-24 (206)
362 2ygr_A Uvrabc system protein A 97.5 2.8E-05 9.5E-10 71.0 1.3 34 5-40 656-689 (993)
363 1rz3_A Hypothetical protein rb 97.5 7.8E-05 2.7E-09 55.9 3.5 23 20-42 23-45 (201)
364 2o5v_A DNA replication and rep 97.4 6.1E-05 2.1E-09 61.7 3.0 34 5-41 15-48 (359)
365 1nij_A Hypothetical protein YJ 97.4 6.3E-05 2.2E-09 60.7 3.0 25 19-43 4-28 (318)
366 2kjq_A DNAA-related protein; s 97.4 4.7E-05 1.6E-09 54.4 1.8 24 20-43 37-60 (149)
367 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 9.3E-05 3.2E-09 52.8 3.3 28 10-40 17-44 (149)
368 1zu4_A FTSY; GTPase, signal re 97.4 0.00011 3.6E-09 59.3 3.9 33 8-42 96-128 (320)
369 2if2_A Dephospho-COA kinase; a 97.4 7.4E-05 2.5E-09 56.0 2.7 22 20-41 2-23 (204)
370 2qor_A Guanylate kinase; phosp 97.4 9.6E-05 3.3E-09 55.5 3.3 24 20-43 13-36 (204)
371 2r6f_A Excinuclease ABC subuni 97.4 2.9E-05 9.9E-10 70.7 0.4 34 5-40 638-671 (972)
372 1cke_A CK, MSSA, protein (cyti 97.4 7.9E-05 2.7E-09 56.8 2.7 23 20-42 6-28 (227)
373 1vma_A Cell division protein F 97.4 0.00015 5.2E-09 58.0 4.4 32 10-43 97-128 (306)
374 1qhl_A Protein (cell division 97.4 8.9E-06 3E-10 62.3 -2.7 29 20-48 28-56 (227)
375 1ex7_A Guanylate kinase; subst 97.3 0.00012 4.1E-09 54.2 3.0 22 21-42 3-24 (186)
376 2vf7_A UVRA2, excinuclease ABC 97.3 2.1E-05 7.2E-10 71.1 -1.5 33 6-40 512-545 (842)
377 3pih_A Uvrabc system protein A 97.3 0.0001 3.4E-09 67.3 2.7 30 5-36 598-627 (916)
378 4eaq_A DTMP kinase, thymidylat 97.3 0.00022 7.5E-09 54.7 4.1 34 8-43 14-50 (229)
379 1odf_A YGR205W, hypothetical 3 97.2 0.00017 5.9E-09 57.3 3.4 27 17-43 29-55 (290)
380 1np6_A Molybdopterin-guanine d 97.2 0.00016 5.5E-09 52.9 2.9 23 20-42 7-29 (174)
381 3kb2_A SPBC2 prophage-derived 97.2 0.00019 6.4E-09 52.0 3.2 22 20-41 2-23 (173)
382 2cvh_A DNA repair and recombin 97.2 8.8E-05 3E-09 56.1 1.4 27 13-41 16-42 (220)
383 2xtz_A Guanine nucleotide-bind 97.2 0.00038 1.3E-08 56.9 5.1 68 69-137 183-263 (354)
384 1e69_A Chromosome segregation 97.2 0.00019 6.6E-09 57.9 3.1 31 8-41 16-46 (322)
385 3t61_A Gluconokinase; PSI-biol 97.2 0.00017 5.9E-09 53.9 2.6 23 20-42 19-41 (202)
386 1n0w_A DNA repair protein RAD5 97.2 0.00014 4.9E-09 55.8 2.1 28 13-42 20-47 (243)
387 3qks_A DNA double-strand break 97.1 0.00027 9.3E-09 53.1 3.3 28 10-40 17-44 (203)
388 1ly1_A Polynucleotide kinase; 97.1 0.0003 1E-08 51.3 3.5 22 20-41 3-24 (181)
389 2pez_A Bifunctional 3'-phospho 97.1 0.00036 1.2E-08 51.1 3.7 23 20-42 6-28 (179)
390 3lw7_A Adenylate kinase relate 97.1 0.00029 9.8E-09 51.1 3.2 20 20-39 2-21 (179)
391 2cdn_A Adenylate kinase; phosp 97.1 0.00037 1.3E-08 52.0 3.8 23 19-41 20-42 (201)
392 1pzn_A RAD51, DNA repair and r 97.1 9E-05 3.1E-09 60.6 0.4 31 11-43 125-155 (349)
393 2yvu_A Probable adenylyl-sulfa 97.1 0.00046 1.6E-08 50.9 4.2 28 14-43 10-37 (186)
394 3cm0_A Adenylate kinase; ATP-b 97.1 0.0004 1.4E-08 51.0 3.6 22 20-41 5-26 (186)
395 1w1w_A Structural maintenance 97.0 0.00025 8.5E-09 59.6 2.6 31 12-44 21-51 (430)
396 1nlf_A Regulatory protein REPA 97.0 0.00021 7.1E-09 56.4 2.0 28 13-42 26-53 (279)
397 1in4_A RUVB, holliday junction 97.0 0.00023 7.9E-09 57.7 2.2 24 20-43 52-75 (334)
398 1uf9_A TT1252 protein; P-loop, 97.0 0.00046 1.6E-08 51.4 3.8 25 18-42 7-31 (203)
399 1ls1_A Signal recognition part 97.0 0.00042 1.4E-08 55.2 3.7 32 8-43 91-122 (295)
400 2px0_A Flagellar biosynthesis 97.0 0.00031 1.1E-08 56.0 2.9 110 20-137 106-252 (296)
401 2ga8_A Hypothetical 39.9 kDa p 97.0 0.0002 6.7E-09 58.2 1.7 37 6-42 11-47 (359)
402 1qhx_A CPT, protein (chloramph 97.0 0.00044 1.5E-08 50.4 3.4 23 20-42 4-26 (178)
403 2rhm_A Putative kinase; P-loop 97.0 0.00055 1.9E-08 50.5 3.9 22 20-41 6-27 (193)
404 3trf_A Shikimate kinase, SK; a 97.0 0.00042 1.5E-08 50.9 3.2 22 20-41 6-27 (185)
405 2jaq_A Deoxyguanosine kinase; 97.0 0.00043 1.5E-08 51.6 3.3 22 21-42 2-23 (205)
406 3cr8_A Sulfate adenylyltranfer 97.0 0.00023 7.8E-09 61.6 1.8 29 14-44 366-394 (552)
407 1nks_A Adenylate kinase; therm 97.0 0.0005 1.7E-08 50.7 3.5 23 20-42 2-24 (194)
408 4b4t_L 26S protease subunit RP 97.0 0.0034 1.2E-07 52.6 8.8 23 20-42 216-238 (437)
409 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00042 1.4E-08 59.2 3.2 35 5-43 54-88 (499)
410 3iij_A Coilin-interacting nucl 96.9 0.00055 1.9E-08 50.1 3.4 21 20-40 12-32 (180)
411 1kht_A Adenylate kinase; phosp 96.9 0.00056 1.9E-08 50.4 3.4 22 20-41 4-25 (192)
412 1ukz_A Uridylate kinase; trans 96.9 0.00078 2.7E-08 50.3 4.2 24 18-41 14-37 (203)
413 2ze6_A Isopentenyl transferase 96.9 0.00058 2E-08 53.1 3.5 22 20-41 2-23 (253)
414 1xjc_A MOBB protein homolog; s 96.9 0.00059 2E-08 49.6 3.3 24 19-42 4-27 (169)
415 1m7g_A Adenylylsulfate kinase; 96.9 0.00062 2.1E-08 51.3 3.4 29 13-43 21-49 (211)
416 1nn5_A Similar to deoxythymidy 96.9 0.00067 2.3E-08 51.0 3.6 22 20-41 10-31 (215)
417 1gvn_B Zeta; postsegregational 96.9 0.00067 2.3E-08 53.8 3.6 23 19-41 33-55 (287)
418 1tev_A UMP-CMP kinase; ploop, 96.9 0.00069 2.4E-08 50.0 3.5 22 20-41 4-25 (196)
419 3ice_A Transcription terminati 96.9 0.00067 2.3E-08 55.7 3.6 32 9-42 166-197 (422)
420 3fb4_A Adenylate kinase; psych 96.9 0.00062 2.1E-08 51.3 3.2 21 21-41 2-22 (216)
421 2wwf_A Thymidilate kinase, put 96.8 0.00085 2.9E-08 50.3 3.8 22 20-41 11-32 (212)
422 1via_A Shikimate kinase; struc 96.8 0.00056 1.9E-08 49.8 2.7 22 20-41 5-26 (175)
423 2c95_A Adenylate kinase 1; tra 96.8 0.00074 2.5E-08 50.0 3.4 22 20-41 10-31 (196)
424 2v54_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 50.0 3.7 23 20-42 5-27 (204)
425 3dl0_A Adenylate kinase; phosp 96.8 0.0007 2.4E-08 51.1 3.2 21 21-41 2-22 (216)
426 1vht_A Dephospho-COA kinase; s 96.8 0.00088 3E-08 50.6 3.7 22 20-41 5-26 (218)
427 2p5t_B PEZT; postsegregational 96.8 0.00056 1.9E-08 53.1 2.6 24 19-42 32-55 (253)
428 3qkt_A DNA double-strand break 96.8 0.00082 2.8E-08 54.6 3.6 21 20-40 24-44 (339)
429 2plr_A DTMP kinase, probable t 96.8 0.00096 3.3E-08 50.0 3.7 22 20-41 5-26 (213)
430 4dzz_A Plasmid partitioning pr 96.8 9.4E-05 3.2E-09 55.4 -2.0 67 68-135 75-141 (206)
431 1gtv_A TMK, thymidylate kinase 96.7 0.00037 1.3E-08 52.4 1.2 22 21-42 2-23 (214)
432 4b4t_K 26S protease regulatory 96.7 0.0066 2.3E-07 50.8 8.7 23 20-42 207-229 (428)
433 1qf9_A UMP/CMP kinase, protein 96.7 0.0013 4.5E-08 48.4 4.1 22 20-41 7-28 (194)
434 1zd8_A GTP:AMP phosphotransfer 96.7 0.00088 3E-08 51.0 3.2 22 20-41 8-29 (227)
435 1aky_A Adenylate kinase; ATP:A 96.7 0.001 3.5E-08 50.4 3.5 22 20-41 5-26 (220)
436 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.6E-08 51.3 3.7 23 19-41 29-51 (243)
437 3r20_A Cytidylate kinase; stru 96.7 0.001 3.5E-08 51.0 3.3 21 20-40 10-30 (233)
438 2bwj_A Adenylate kinase 5; pho 96.7 0.001 3.5E-08 49.3 3.2 22 20-41 13-34 (199)
439 4b4t_I 26S protease regulatory 96.7 0.0087 3E-07 49.9 8.9 23 20-42 217-239 (437)
440 1zak_A Adenylate kinase; ATP:A 96.7 0.00086 2.9E-08 50.9 2.8 22 20-41 6-27 (222)
441 2f6r_A COA synthase, bifunctio 96.7 0.0015 5.1E-08 51.6 4.2 24 17-40 73-96 (281)
442 2pt5_A Shikimate kinase, SK; a 96.7 0.0012 4E-08 47.6 3.3 21 21-41 2-22 (168)
443 2z0h_A DTMP kinase, thymidylat 96.6 0.0011 3.8E-08 49.0 3.2 22 21-42 2-23 (197)
444 1tf7_A KAIC; homohexamer, hexa 96.6 0.00072 2.5E-08 58.3 2.4 32 11-44 275-306 (525)
445 3k1j_A LON protease, ATP-depen 96.6 0.00021 7.2E-09 62.7 -1.0 38 5-44 48-85 (604)
446 1q3t_A Cytidylate kinase; nucl 96.6 0.0013 4.6E-08 50.3 3.6 22 20-41 17-38 (236)
447 3end_A Light-independent proto 96.6 0.0048 1.6E-07 49.2 6.9 66 68-135 156-224 (307)
448 4b4t_J 26S protease regulatory 96.6 0.0067 2.3E-07 50.2 7.8 23 20-42 183-205 (405)
449 2dr3_A UPF0273 protein PH0284; 96.6 0.00082 2.8E-08 51.6 2.3 29 11-41 17-45 (247)
450 2pbr_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 48.6 3.2 21 21-41 2-22 (195)
451 2vli_A Antibiotic resistance p 96.6 0.00089 3E-08 49.0 2.4 22 20-41 6-27 (183)
452 1uj2_A Uridine-cytidine kinase 96.6 0.0014 4.7E-08 50.9 3.6 24 18-41 21-44 (252)
453 1e6c_A Shikimate kinase; phosp 96.6 0.001 3.6E-08 48.1 2.7 22 20-41 3-24 (173)
454 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0014 4.9E-08 51.1 3.7 22 20-41 5-26 (260)
455 1e4v_A Adenylate kinase; trans 96.6 0.0012 4.2E-08 49.7 3.2 21 21-41 2-22 (214)
456 1lv7_A FTSH; alpha/beta domain 96.6 0.001 3.4E-08 51.7 2.7 23 20-42 46-68 (257)
457 1sxj_C Activator 1 40 kDa subu 96.6 0.00021 7.1E-09 58.1 -1.5 35 9-43 36-70 (340)
458 2grj_A Dephospho-COA kinase; T 96.5 0.0017 5.8E-08 48.2 3.5 24 18-41 11-34 (192)
459 3auy_A DNA double-strand break 96.5 0.0011 3.7E-08 54.6 2.6 29 9-40 18-46 (371)
460 1zuh_A Shikimate kinase; alpha 96.5 0.0016 5.4E-08 47.0 3.2 23 19-41 7-29 (168)
461 2xb4_A Adenylate kinase; ATP-b 96.5 0.0015 5.2E-08 49.6 3.3 21 21-41 2-22 (223)
462 3zvl_A Bifunctional polynucleo 96.5 0.0032 1.1E-07 52.6 5.2 25 18-42 257-281 (416)
463 4ad8_A DNA repair protein RECN 96.5 0.00073 2.5E-08 58.2 1.2 32 6-40 50-81 (517)
464 2iyv_A Shikimate kinase, SK; t 96.5 0.0016 5.6E-08 47.7 3.0 22 20-41 3-24 (184)
465 3sr0_A Adenylate kinase; phosp 96.4 0.0019 6.3E-08 48.6 3.2 22 21-42 2-23 (206)
466 3umf_A Adenylate kinase; rossm 96.4 0.0028 9.4E-08 48.0 4.1 23 20-42 30-52 (217)
467 3m6a_A ATP-dependent protease 96.4 0.00095 3.2E-08 57.8 1.7 31 10-43 102-132 (543)
468 1jbk_A CLPB protein; beta barr 96.4 0.0021 7.1E-08 46.9 3.4 23 20-42 44-66 (195)
469 3cf0_A Transitional endoplasmi 96.4 0.0019 6.6E-08 51.4 3.4 27 14-42 46-72 (301)
470 2w58_A DNAI, primosome compone 96.4 0.0021 7.2E-08 47.8 3.2 23 20-42 55-77 (202)
471 1ak2_A Adenylate kinase isoenz 96.4 0.0023 7.7E-08 49.0 3.4 22 20-41 17-38 (233)
472 3lda_A DNA repair protein RAD5 96.3 0.0016 5.4E-08 54.1 2.6 26 13-40 174-199 (400)
473 1u0l_A Probable GTPase ENGC; p 96.3 0.011 3.6E-07 47.2 7.3 63 69-138 63-129 (301)
474 3be4_A Adenylate kinase; malar 96.3 0.0023 7.7E-08 48.4 3.2 22 20-41 6-27 (217)
475 1sxj_E Activator 1 40 kDa subu 96.3 0.0014 4.9E-08 53.2 2.2 23 20-42 37-59 (354)
476 3ake_A Cytidylate kinase; CMP 96.3 0.0024 8E-08 47.7 3.2 21 21-41 4-24 (208)
477 1ypw_A Transitional endoplasmi 96.3 0.002 6.8E-08 58.4 3.1 29 13-43 234-262 (806)
478 3bos_A Putative DNA replicatio 96.3 0.0026 8.8E-08 48.4 3.3 23 20-42 53-75 (242)
479 3a8t_A Adenylate isopentenyltr 96.2 0.0036 1.2E-07 50.5 4.1 24 20-43 41-64 (339)
480 3d3q_A TRNA delta(2)-isopenten 96.2 0.0027 9.3E-08 51.3 3.4 23 20-42 8-30 (340)
481 3exa_A TRNA delta(2)-isopenten 96.2 0.0031 1.1E-07 50.4 3.7 23 20-42 4-26 (322)
482 1ltq_A Polynucleotide kinase; 96.2 0.0029 9.8E-08 50.3 3.5 22 20-41 3-24 (301)
483 3foz_A TRNA delta(2)-isopenten 96.2 0.0036 1.2E-07 49.9 4.0 23 20-42 11-33 (316)
484 3crm_A TRNA delta(2)-isopenten 96.2 0.0029 1E-07 50.8 3.5 23 20-42 6-28 (323)
485 2qmh_A HPR kinase/phosphorylas 96.2 0.0032 1.1E-07 46.8 3.4 23 20-42 35-57 (205)
486 2ce7_A Cell division protein F 96.2 0.0018 6E-08 55.0 1.9 23 20-42 50-72 (476)
487 2p65_A Hypothetical protein PF 96.2 0.0026 8.7E-08 46.3 2.6 23 20-42 44-66 (187)
488 4fcw_A Chaperone protein CLPB; 96.1 0.0047 1.6E-07 49.1 4.3 24 20-43 48-71 (311)
489 3v9p_A DTMP kinase, thymidylat 96.1 0.0026 8.9E-08 48.5 2.6 23 20-42 26-48 (227)
490 3eph_A TRNA isopentenyltransfe 96.1 0.0038 1.3E-07 51.6 3.6 22 20-41 3-24 (409)
491 3b9p_A CG5977-PA, isoform A; A 96.1 0.0035 1.2E-07 49.6 3.3 23 20-42 55-77 (297)
492 1a7j_A Phosphoribulokinase; tr 96.0 0.002 6.8E-08 51.1 1.6 22 20-41 6-27 (290)
493 2ius_A DNA translocase FTSK; n 96.0 0.0019 6.6E-08 55.2 1.5 30 10-41 160-189 (512)
494 3h4m_A Proteasome-activating n 96.0 0.0043 1.5E-07 48.7 3.4 23 20-42 52-74 (285)
495 1tue_A Replication protein E1; 96.0 0.004 1.4E-07 46.6 2.9 23 20-42 59-81 (212)
496 1sxj_D Activator 1 41 kDa subu 96.0 0.0025 8.4E-08 51.7 1.9 23 20-42 59-81 (353)
497 2vf7_A UVRA2, excinuclease ABC 95.9 0.0026 8.8E-08 57.6 2.0 31 5-37 24-54 (842)
498 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0062 2.1E-07 47.1 3.8 23 20-42 40-62 (262)
499 3hr8_A Protein RECA; alpha and 95.9 0.0043 1.5E-07 50.6 2.9 27 14-42 58-84 (356)
500 3t15_A Ribulose bisphosphate c 95.8 0.0054 1.8E-07 48.7 3.3 23 20-42 37-59 (293)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=7.5e-25 Score=171.42 Aligned_cols=168 Identities=34% Similarity=0.627 Sum_probs=117.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------- 88 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------- 88 (240)
.....+|+|+|++|+|||||+|+|+|...+.++....+.|..+......+ .+..+.||||||+.+.......
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34558999999999999999999999887666655456677777777777 8889999999999876543221
Q ss_pred ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHH
Q 036363 89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHL 162 (240)
Q Consensus 89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
+++|++|+|++++ +++..+...+..+.+.++.....|+++|+||+|.+... .+++++.. ....++.+++.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~i~~-~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLRE-APEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc--cHHHHHHh-chHHHHHHHHH
Confidence 6789999999998 77778888888888887765556899999999987654 67777766 35678999999
Q ss_pred hCCcEEEEeCCCcchhhhHHHHHHHHH
Q 036363 163 FDNRCVLFDNKTKDAAKRTEQIGKLRS 189 (240)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~ll~ 189 (240)
|+.+|++|++..... ....++.+|+.
T Consensus 181 ~~~~~~~~~~~~~~~-~~~~~v~~ll~ 206 (239)
T 3lxx_A 181 FGDRYCALNNKATGA-EQEAQRAQLLG 206 (239)
T ss_dssp HSSSEEECCTTCCHH-HHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcc-ccHHHHHHHHH
Confidence 999999999886433 33456677776
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.91 E-value=2.3e-23 Score=163.67 Aligned_cols=167 Identities=32% Similarity=0.523 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC-cC-------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS-EF------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~------- 88 (240)
....+|+|+|.+|+|||||+|+|+|...+.......++|..+......+ ++..+.||||||+.+..... ..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3458999999999999999999999887766555556777777777777 88899999999997654322 11
Q ss_pred ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCc-CCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHH
Q 036363 89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNC-FDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILH 161 (240)
Q Consensus 89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (240)
+++|++|+|++++ +++..+...++.+.+.|+... ..++++++||+|. ... .+++++.......++.+++
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl-~~~--~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL-AGG--SLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG-TTC--CHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhc-CCC--CHHHHHhhcccHHHHHHHH
Confidence 7899999999998 688888999999999888543 3578888999984 333 7888887655677999999
Q ss_pred HhCCcEEEEeCCCcchhhhHHHHHHHHH
Q 036363 162 LFDNRCVLFDNKTKDAAKRTEQIGKLRS 189 (240)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 189 (240)
.|+.+|++|++..... ....++.+|+.
T Consensus 174 ~~g~~~~~~~~~~~~~-~~~~~v~~Ll~ 200 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGR-EQEAQVEQLLG 200 (247)
T ss_dssp HTTTCEEECCTTCCHH-HHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCcc-ccHHHHHHHHH
Confidence 9999999999886543 33467777777
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=2.1e-21 Score=153.67 Aligned_cols=150 Identities=30% Similarity=0.529 Sum_probs=115.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---------- 87 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------- 87 (240)
...+|+|+|++|+|||||+|+|++...+.....+.++|..+......+ .+..+.+|||||+.++.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999999876555444344566666666677 888999999999987754321
Q ss_pred ---CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEe-CCCCCCCCcccHHHHhcccCCchHHHHHHHh
Q 036363 88 ---FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFS-GRDELEANDETLEDYLGRECPKPLKEILHLF 163 (240)
Q Consensus 88 ---~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (240)
.+.+|++++|++++ +++..+...+..+.+.++.....|+++|+| |+|... . .+..++.......+..++..+
T Consensus 100 ~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~-~--~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG-G--SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT-C--CHHHHHHHCCCHHHHHHHHHT
T ss_pred HhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC-c--cHHHHHHhcchHHHHHHHHHh
Confidence 17899999999998 588888888899988887654456667766 999653 2 577777664556678889999
Q ss_pred CCcEEEEeC
Q 036363 164 DNRCVLFDN 172 (240)
Q Consensus 164 ~~~~~~~~~ 172 (240)
+.+++.|+.
T Consensus 176 ~~~~~~~~~ 184 (260)
T 2xtp_A 176 GGRICAFNN 184 (260)
T ss_dssp TTCEEECCT
T ss_pred CCeEEEecC
Confidence 988876655
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=1.4e-19 Score=143.27 Aligned_cols=144 Identities=20% Similarity=0.290 Sum_probs=107.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+++|++|+|||||+|+|++........ ..+.|.........+ .+..+.+|||||+.++......
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 34899999999999999999999977533322 234455555555566 7889999999999887644332
Q ss_pred --CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC
Q 036363 89 --DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD 164 (240)
Q Consensus 89 --~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
..+|++++|++++. +++..+..++..+...++.....|+++|+||+|........+++++.. ....++.++..+.
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~~ 190 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAGS 190 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHHh
Confidence 38899999998873 577777899999999988766678999999999765555678888765 2344566665543
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.80 E-value=6.3e-19 Score=140.17 Aligned_cols=141 Identities=22% Similarity=0.341 Sum_probs=101.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+++|.+|+|||||+|+|++......+. ..+.|.......... .+..+.+|||||+.++......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 35899999999999999999999977533322 234444444444555 7788999999999876543221
Q ss_pred --CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHH
Q 036363 89 --DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILH 161 (240)
Q Consensus 89 --~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (240)
..+|+++||++++. +++..+..++..+...++...+.|+++|+||+|...+....+++++.. ....++..+.
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~ 190 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVR 190 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHH
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHH
Confidence 47999999998873 577777888999988888665578999999999765544467777654 2333444443
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.77 E-value=1.9e-17 Score=127.70 Aligned_cols=118 Identities=12% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------- 88 (240)
....+|+++|.+|+|||||+|+|++...........+.|............+..+.+|||||+.+.......
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 345899999999999999999999986322222234556555555544225678999999998765332221
Q ss_pred -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|++++++..+..++..+.. ...|+++|+||+|....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCCh
Confidence 55899999999998888887777777653 23679999999997654
No 7
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=9.3e-17 Score=119.41 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=92.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCc
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEI 91 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~ 91 (240)
.....+|+++|++|+|||||+|+|++........ .+.+.........+ ++ ..+.+|||||...+...... ..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 82 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGT 82 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCT--TTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccC--CCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccC
Confidence 3445899999999999999999999876543222 33333344444444 55 57889999998877655554 889
Q ss_pred eEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEE
Q 036363 92 HAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF 170 (240)
Q Consensus 92 ~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (240)
|++++|+|++++.+... ..++..+..... ..|+++|+||+|......... .....+....+..++..
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~ 150 (181)
T 3tw8_B 83 HGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVET---------EDAYKFAGQMGIQLFET 150 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCCEEEC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCH---------HHHHHHHHHcCCeEEEE
Confidence 99999999986544444 234444444332 368999999999554321111 12234444556666666
Q ss_pred eCCC
Q 036363 171 DNKT 174 (240)
Q Consensus 171 ~~~~ 174 (240)
+...
T Consensus 151 Sa~~ 154 (181)
T 3tw8_B 151 SAKE 154 (181)
T ss_dssp BTTT
T ss_pred ECCC
Confidence 6553
No 8
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.76 E-value=2.7e-17 Score=122.14 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=83.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+++|++|+|||||++++++........ .+.+.........+ ++..+.+|||||+..+...... ..+|++++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 3899999999999999999999876543322 22233333344455 7788999999999887665544 88999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+|++++........+..+. ....|+++|+||+|....
T Consensus 85 v~d~~~~~~~~~~~~l~~~~-----~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAINHAK-----AANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEETTCCCCHHHHHHHHHHG-----GGSCCEEEEEETTTSSCS
T ss_pred EEECCCCCcHHHHHHHHHHH-----hCCCCEEEEEECccCCcC
Confidence 99998777776666655442 123679999999996553
No 9
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=1.8e-15 Score=117.12 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=77.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---------- 87 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------- 87 (240)
...+|+++|++|+|||||+|+|++....... ..+.|.........+ .+..+.+|||||+.+......
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQS--YSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEEC--C-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4589999999999999999999998653222 234455555555555 677899999999976432221
Q ss_pred -CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 88 -FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 88 -~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
...+|++++|+|++++.+......+.++..........|+++|+||+|....
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 1677999999999976553322222333322222123679999999996654
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=3.7e-17 Score=130.22 Aligned_cols=145 Identities=18% Similarity=0.251 Sum_probs=88.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC----CCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCCCc
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAGSE 87 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~ 87 (240)
..+...+|+++|.+|+|||||+|+|++...+..... ....|........... ++ ..+.+|||||+.++.....
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 345568999999999999999999998876554321 0122222222322221 33 3789999999976643321
Q ss_pred C-----------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 88 F-----------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 88 ~-----------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
. ..+|+++|+++.+ .++...+...++.+.. ..|+++|+||+|.+
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence 1 3578999999776 4678888787777643 36799999999976
Q ss_pred CCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 138 EANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
... .+..+... +...+...+.+++.++.
T Consensus 158 ~~~--e~~~~~~~-----i~~~l~~~~i~v~~~sa 185 (274)
T 3t5d_A 158 TPE--ECQQFKKQ-----IMKEIQEHKIKIYEFPE 185 (274)
T ss_dssp CHH--HHHHHHHH-----HHHHHHHTTCCCCCC--
T ss_pred CHH--HHHHHHHH-----HHHHHHHcCCeEEcCCC
Confidence 542 33333333 45556666666665654
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.73 E-value=5.4e-17 Score=130.69 Aligned_cols=115 Identities=22% Similarity=0.234 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|++|+|||||+|+|+|........ ..++|.........+ ++..+.+|||||+.++..... ..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 689999999999999999999987533222 123333333233344 778999999999987543111 18
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.+|++++|+|++++++..+...++.+...++ ..|+++|+||+|....
T Consensus 86 ~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY 132 (301)
T ss_dssp SCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS
T ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCc
Confidence 8999999999998888887666666654321 3679999999996644
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.72 E-value=1.5e-16 Score=128.62 Aligned_cols=115 Identities=20% Similarity=0.297 Sum_probs=85.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC-CcEEEEEeCCCCCCCCCCCcC------
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD-GQVVNVIDTPGLFDFSAGSEF------ 88 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~------ 88 (240)
+++.-.|+++|.+|+|||||+|+|+|....... ...++|.......... . +..+.+|||||+.++......
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 334579999999999999999999998754322 2234455444444455 6 889999999999876521111
Q ss_pred ------CCceEEEEEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 89 ------DEIHAALVVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ------~~~~~~l~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+|++++|+|++++.+..+... +..+.. ...|+++|+||+|..
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 78999999999998888888766 555532 236799999999976
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.71 E-value=6.9e-16 Score=116.29 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=75.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------- 88 (240)
....+|+++|++|+|||||+|+|++...........+.|....... . +..+.+|||||+.+.......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3458999999999999999999998763322223334444443322 2 346899999997665432110
Q ss_pred -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|++++.+..+...+..+.. ...|+++|+||+|....
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPK 149 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCG
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh
Confidence 45599999999998888888776666653 23579999999997654
No 14
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.71 E-value=6e-17 Score=120.08 Aligned_cols=114 Identities=22% Similarity=0.230 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|++|+|||||+|+|++........ ..+.|.........+ ++..+.+|||||+..+..... ..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999875322211 233344443344555 677889999999976532111 17
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+|++++|+|++++.+.....++..+..... ...|+++|+||+|..
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADIT 128 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcc--cCCCEEEEEECccCC
Confidence 8899999999987777666666666665432 236799999999953
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.70 E-value=2.7e-16 Score=115.80 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++...........+ .......... ++ ..+.+|||||...+...... ..+|++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG--ASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS--CEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccc--eEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 47999999999999999999997764333222222 2222223333 33 36789999998877655444 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
++|+|++++.+... ..++..+....+. ..|+++|+||+|......... .....+....+..++..+..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSI---------QEAESYAESVGAKHYHTSAK 151 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCH---------HHHHHHHHHTTCEEEEEBTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccCH---------HHHHHHHHHcCCeEEEecCC
Confidence 99999986544443 3344455544332 368999999999654321111 12344455556666666655
Q ss_pred C
Q 036363 174 T 174 (240)
Q Consensus 174 ~ 174 (240)
.
T Consensus 152 ~ 152 (170)
T 1z08_A 152 Q 152 (170)
T ss_dssp T
T ss_pred C
Confidence 3
No 16
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.70 E-value=1.1e-15 Score=115.48 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=80.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
.....+|+|+|.+|+|||||+++|++..... .... |.......+.. .+..+.+|||||+..+...... ..+|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA----TVGYNVETFEK-GRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC----CSSEEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc----ccceeEEEEEe-CCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 3355899999999999999999999987544 2122 22233344445 7789999999999877655444 8899
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHHhCC------CcCCeEEEEEeCCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGK------NCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~------~~~~~~i~v~~~~D~~~~ 139 (240)
++++|+|++++.+.... .++..+...... ....|+++|+||+|....
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99999999976665543 344444322110 014679999999996654
No 17
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.70 E-value=6.4e-16 Score=117.27 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=75.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
....+|+++|.+|+|||||+|+|++...........+.+. ........ ....+.+|||||...+...... ..+|++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGK-DEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECC-EEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 3458999999999999999999998765432222111111 11111111 3457789999998887765554 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++|+++++..+.... .++..+..... ....|+++|+||+|....
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccc
Confidence 999999865444432 33333332222 123579999999996543
No 18
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.70 E-value=3.2e-16 Score=117.72 Aligned_cols=143 Identities=11% Similarity=0.035 Sum_probs=90.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|+|++...........+.+. ....... . ...+.+|||||...+...... ..+|+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE--EEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE--EEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 357999999999999999999998765333222223222 2222333 3 347889999998877665544 88999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
+++|+|++++.+... ..++..+.... ....|+++|+||+|......... .....+....+..++..+.
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa 166 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPA---------EDGRRLADDLGFEFFEASA 166 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCH---------HHHHHHHHHcCCeEEEEEC
Confidence 999999986544443 33444454432 12368999999999654321111 1234445555555655555
Q ss_pred CC
Q 036363 173 KT 174 (240)
Q Consensus 173 ~~ 174 (240)
..
T Consensus 167 ~~ 168 (189)
T 2gf9_A 167 KE 168 (189)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.70 E-value=6.7e-16 Score=115.00 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=87.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++...........+.+. ...... ++ ..+.+|||||...+...... ..+|+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF---TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 348999999999999999999996654322222222111 222333 44 35689999999888655544 78999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
+++|++++++.+... ..++..+...+.. ...|+++|+||+|......... .....+....+..++..+.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa 150 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISY---------EEGKALAESWNAAFLESSA 150 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCH---------HHHHHHHHHTTCEEEECCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecH---------HHHHHHHHHhCCcEEEEec
Confidence 999999986544444 2344444444332 2367999999999644321111 1234445555555555444
Q ss_pred C
Q 036363 173 K 173 (240)
Q Consensus 173 ~ 173 (240)
.
T Consensus 151 ~ 151 (181)
T 3t5g_A 151 K 151 (181)
T ss_dssp T
T ss_pred C
Confidence 4
No 20
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.70 E-value=2.3e-16 Score=118.83 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=78.7
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG 85 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (240)
+++++++..+. .+|+++|++|+|||||++++++..... . ..|.........+ ++..+.+|||||...+...
T Consensus 13 ~l~~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~~~~~~-~----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~ 83 (190)
T 1m2o_B 13 VLASLGLWNKH---GKLLFLGLDNAGKTTLLHMLKNDRLAT-L----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRL 83 (190)
T ss_dssp --------------CEEEEEESTTSSHHHHHHHHHHSCCCC-C----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTTS
T ss_pred HHHHhhccCCc---cEEEEECCCCCCHHHHHHHHhcCCCCc-c----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHHH
Confidence 44555665544 699999999999999999999865421 1 1222223345555 7788999999999877655
Q ss_pred CcC--CCceEEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 86 SEF--DEIHAALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 86 ~~~--~~~~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
... ..+|++++|+|++++.+.... ..+..+.... .....|+++|+||+|...
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcC
Confidence 444 889999999999976665542 3333333211 112467999999999654
No 21
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=3e-16 Score=117.52 Aligned_cols=141 Identities=19% Similarity=0.210 Sum_probs=86.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|+|++........ +++.......... ++. .+.+|||||...+...... ..+|++
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYD---PTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 79 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 4899999999999999999999876432222 1222222223333 444 4678999998877665544 788999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
++|++++++.+... ..++..+..... ....|+++|+||+|..... .. ......+....+.+++..+..
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~-~~---------~~~~~~~~~~~~~~~~~~Sa~ 148 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRT-VD---------TKQAQDLARSYGIPFIETSAK 148 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCS-SC---------HHHHHHHHHHHTCCEEECCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccc-cC---------HHHHHHHHHHcCCeEEEEeCC
Confidence 99999986544444 334444444332 2346799999999965332 11 112334445556666666554
Q ss_pred C
Q 036363 174 T 174 (240)
Q Consensus 174 ~ 174 (240)
.
T Consensus 149 ~ 149 (189)
T 4dsu_A 149 T 149 (189)
T ss_dssp T
T ss_pred C
Confidence 3
No 22
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.70 E-value=1.7e-16 Score=116.73 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++......... +.+.........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT--TIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGI 79 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEE
Confidence 47999999999999999999998764332222 2222233333333 33 36789999998776655444 899999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
++|+|++++.+... ..++..+..... ...|+++|+||+|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl 120 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDM 120 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccC
Confidence 99999986544433 344455554432 23689999999996
No 23
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.69 E-value=9e-16 Score=115.48 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=89.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++...........+.+. ....... ++ ..+.+|||||...+...... ..+|+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE--EEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee--EEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 357999999999999999999998765333222222222 2233333 44 47889999998877655444 89999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
+++|+|+++..+... ..++..+..... ...|+++|+||+|......... .....+....+..++..+.
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~~~Sa 165 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKR---------EEGEAFAREHGLIFMETSA 165 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCEEEEECT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCH---------HHHHHHHHHcCCEEEEEeC
Confidence 999999986444443 344444544322 2468999999999653221111 1223444455666666665
Q ss_pred CC
Q 036363 173 KT 174 (240)
Q Consensus 173 ~~ 174 (240)
..
T Consensus 166 ~~ 167 (191)
T 2a5j_A 166 KT 167 (191)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 24
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.69 E-value=3e-16 Score=118.37 Aligned_cols=145 Identities=18% Similarity=0.139 Sum_probs=94.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCc
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEI 91 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~ 91 (240)
.....+|+++|++|+|||||+|+|++........ .+.+.........+ ++ ..+.+|||||...+...... ..+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 3445899999999999999999999876543332 23333333344444 44 46889999998776554444 889
Q ss_pred eEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEE
Q 036363 92 HAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF 170 (240)
Q Consensus 92 ~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (240)
|++++|+|++++.+... ..++..+..... ...|+++|+||+|......... .....+....+.+++..
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDY---------TTAKEFADSLGIPFLET 158 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCH---------HHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCH---------HHHHHHHHHcCCcEEEE
Confidence 99999999986544433 344444544432 2368999999999654431111 12344555556677777
Q ss_pred eCCC
Q 036363 171 DNKT 174 (240)
Q Consensus 171 ~~~~ 174 (240)
+...
T Consensus 159 Sa~~ 162 (196)
T 3tkl_A 159 SAKN 162 (196)
T ss_dssp CTTT
T ss_pred eCCC
Confidence 6553
No 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.69 E-value=1.8e-16 Score=116.69 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=77.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++...........+.+... ....+ .+ ..+.+|||||+..+...... ..+|++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEE-CCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 4799999999999999999999876533323323333222 22333 33 46889999998766544333 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+... ..++..+... + ....|+++|+||+|...
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~-~-~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQH-G-PPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-S-CTTSEEEEEEECTTCGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-C-CCCCcEEEEEECCcccc
Confidence 99999986555444 3444555443 2 22367899999999654
No 26
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=4.5e-16 Score=118.52 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=80.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+++|++........... +.........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI--GVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSS--CCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--cceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 4899999999999999999999876543322222 22233333444 44 37889999999887665554 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++|+|++++.+.... .++..+..... ...|+++|+||+|....
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDK 128 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccc
Confidence 999999865554443 33444444322 24689999999996543
No 27
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.69 E-value=4.1e-16 Score=113.76 Aligned_cols=112 Identities=22% Similarity=0.233 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE 90 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~ 90 (240)
.+|+++|++|+|||||++++++....... ...+.+.......... .+..+.+|||||+......... ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987632121 1233444444455555 7778999999999875431111 78
Q ss_pred ceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 91 IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 91 ~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++++|+|++++++..+......+.. ...|+++|+||+|...
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR-----KGKPVILVATKVDDPK 122 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH-----HTCCEEEEEECCCSGG
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh-----cCCCEEEEEECccccc
Confidence 999999999997788777666665544 2357999999999554
No 28
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.69 E-value=2e-16 Score=124.62 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC----cC-------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS----EF------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~------- 88 (240)
.+|+++|++|+|||||+|+|+|.....+.. .+.|.........+ ++..+.+|||||+.++.... ..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~--pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNW--PGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEEC--TTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCC--CCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 589999999999999999999987543332 46666666666666 78899999999999887531 10
Q ss_pred ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+|++++|+|+++ ..........+. ....|+++|+||+|...
T Consensus 79 ~~~~~~d~vi~VvDas~--~~~~~~l~~~l~-----~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 79 VIDLEYDCIINVIDACH--LERHLYLTSQLF-----ELGKPVVVALNMMDIAE 124 (256)
T ss_dssp HHHSCCSEEEEEEEGGG--HHHHHHHHHHHT-----TSCSCEEEEEECHHHHH
T ss_pred HhhCCCCEEEEEeeCCC--chhHHHHHHHHH-----HcCCCEEEEEEChhcCC
Confidence 68999999999984 122223333332 22468999999999653
No 29
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.69 E-value=1.6e-15 Score=114.86 Aligned_cols=139 Identities=15% Similarity=0.143 Sum_probs=87.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC------------------------------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG------------------------------ 68 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~------------------------------ 68 (240)
..+|+++|++|+|||||+|+|++...........+ .........+ ++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG--ASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--CEEEEEEEET-TC------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccc--ceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence 48999999999999999999998764322222111 1122222222 22
Q ss_pred ---------cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 69 ---------QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 69 ---------~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
..+.+|||||...+...... ..+|++++|+|++++.+..+ ..++..+....+ .|+++|+||+|
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~piilv~NK~D- 158 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIIILVANKID- 158 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEEEEEECTT-
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEEEEEECCC-
Confidence 57899999998776554433 88999999999986555444 334444444322 78999999999
Q ss_pred CCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363 137 LEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174 (240)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (240)
........+ .+..+....+..++..+...
T Consensus 159 ~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~ 187 (208)
T 3clv_A 159 KNKFQVDIL---------EVQKYAQDNNLLFIQTSAKT 187 (208)
T ss_dssp CC-CCSCHH---------HHHHHHHHTTCEEEEECTTT
T ss_pred cccccCCHH---------HHHHHHHHcCCcEEEEecCC
Confidence 433211222 23445555566666666553
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.68 E-value=3.5e-16 Score=114.84 Aligned_cols=140 Identities=19% Similarity=0.096 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++...........+ .........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--VDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS--SSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceE--EEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 48999999999999999999998754332222222 2222233333 33 37889999998776555444 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
++|++++++.+... ..++..+..... ..|+++|+||+|......... ..+..+....+..++..+..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKN---------EEAEGLAKRLKLRFYRTSVK 149 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCSSCH---------HHHHHHHHHHTCEEEECBTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCcccccCH---------HHHHHHHHHcCCeEEEEecC
Confidence 99999986444433 344445544432 367999999999654321111 12334444556566655544
No 31
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.68 E-value=9.4e-16 Score=115.47 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=87.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
..+|+++|++|+|||||+|+|++...........+.+... ...... ....+.+|||||+..+...... ..+|+++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFST--RTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEE--EEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4799999999999999999999876543332222322222 222220 2346789999999877554443 8899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (240)
+|+|++++.+... ..++..+.... ....|+++|+||+|......... .....+....+..++..+...
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~~ 171 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREVPT---------EEARMFAENNGLLFLETSALD 171 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCSCH---------HHHHHHHHHTTCEEEEECTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccccccCH---------HHHHHHHHHcCCEEEEEeCCC
Confidence 9999985444332 23333343221 23468999999999654321111 123344445555666665543
No 32
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=3.1e-16 Score=118.20 Aligned_cols=119 Identities=17% Similarity=0.065 Sum_probs=78.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
....+|+++|++|+|||||+|++++...........+.+.......... ....+.+|||||...+...... ..+|++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 3458999999999999999999998764333233333333222221111 2347899999998766544433 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|+++..+... ..++..+..... ...|+++|+||+|...
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSD 142 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 99999986555444 334444444321 2368999999999653
No 33
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.68 E-value=2.7e-15 Score=110.43 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=79.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+++|++|+|||||+|++++..... . ..|.........+ ++..+.+|||||...+...... ..+|++++
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT-T----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC-C----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC-c----CCcCccceEEEEE-CCEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 3899999999999999999998765422 1 1233334445556 7889999999999876554433 88999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+|++++.+.... ..+..+..... ....|+++|+||+|....
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC
Confidence 9999977665542 33333322110 124689999999996544
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.68 E-value=5.1e-16 Score=115.51 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++...........+.+... ....+ . ...+.+|||||...+...... ..+|+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFS--QTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEE--EEEEE-TTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEE--EEEEE-CCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34799999999999999999999876543333333333222 22333 3 347889999998766544333 88999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++|+|++++.+... ..++..+..... ...|+++|+||+|....
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDA 132 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCccccc
Confidence 999999986555443 344555554422 24679999999996543
No 35
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.7e-16 Score=119.49 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=75.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|+|++...........+.+. ......+ . ...+.+|||||...+...... ..+|++
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF--KVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE--EEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 48999999999999999999998764333222222222 2222333 3 346889999998776554443 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++|+|++++.+.... .++..+.... .....|+++|+||+|..
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEECCcCc
Confidence 999999855444332 2333332221 11346899999999963
No 36
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.68 E-value=1.9e-15 Score=115.00 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|+|++........ ...+.......... ++ ..+.+|||||...+...... ..+|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45899999999999999999999876433222 22222333333333 33 47899999998876655444 88999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGK--NCFDYMIVVFSGRDEL 137 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~i~v~~~~D~~ 137 (240)
+++|+|++++.+.... .++..+...... ....|+++|+||+|..
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9999999865444432 344445444321 1236799999999965
No 37
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.68 E-value=1.3e-15 Score=114.67 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=79.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------- 88 (240)
....+|+++|++|+|||||+|+|++.... ......+.|....... .+..+.+|||||+.........
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 34489999999999999999999998632 2222334444433221 3456889999997654322111
Q ss_pred -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|++...+..+...+.++... ..|+++|+||+|...+
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh
Confidence 567999999999877788777777666543 3679999999997654
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=6.6e-17 Score=118.93 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||+|++++...........+.+.. .....+ ++ ..+.+|||||...+...... ..+|+++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL--TQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 78999999999999999999987644333222222222 222333 33 37889999997765443332 8899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|++++.+..+ ..++..+..... ...|+++|+||+|....
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence 9999986544443 234445544432 23679999999996643
No 39
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.68 E-value=1.5e-16 Score=120.55 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=78.5
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
.+++++++.... .+|+++|++|+|||||++++++..... ...+.+.+ .....+ ++..+.+|||||...+..
T Consensus 14 ~~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~----~~~~~~-~~~~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 14 SVLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT----SEELTI-AGMTFTTFDLGGHIQARR 84 (198)
T ss_dssp HHHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEEEEE-TTEEEEEEEECC----CC
T ss_pred HHHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce----eEEEEE-CCEEEEEEECCCcHhhHH
Confidence 344555665544 689999999999999999999875422 11112222 234455 678899999999988766
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.... ..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|...
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE 140 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccc
Confidence 5544 88999999999986655554 23333333211 112367999999999654
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.67 E-value=3e-16 Score=115.39 Aligned_cols=116 Identities=17% Similarity=0.140 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
..+|+++|++|+|||||+|++++...........+.+... ...... ....+.+|||||...+...... ..+|+++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4799999999999999999999765433322223322222 222331 1347889999998765443333 8899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLAN 125 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 9999986544443 334444444322 2367899999999643
No 41
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.67 E-value=1.4e-15 Score=113.48 Aligned_cols=144 Identities=23% Similarity=0.221 Sum_probs=90.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCc
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEI 91 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~ 91 (240)
..+..+|+++|++|+|||||+|++++...........+ .. ....... ++. .+.+|||||...+...... ..+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~--~~-~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE--DS-YLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--EE-EEEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--ce-eEEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34568999999999999999999997654332222111 11 1222333 444 4567999998776554443 789
Q ss_pred eEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEE
Q 036363 92 HAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF 170 (240)
Q Consensus 92 ~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (240)
|++++|++++++.+... ..++..+...... ...|+++|+||+|......... .....+....+..++..
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~~~ 160 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTR---------DQGKEMATKYNIPYIET 160 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCH---------HHHHHHHHHHTCCEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCH---------HHHHHHHHHhCCeEEEe
Confidence 99999999986544443 3444445443332 2367999999999654321111 12345555666777777
Q ss_pred eCC
Q 036363 171 DNK 173 (240)
Q Consensus 171 ~~~ 173 (240)
+..
T Consensus 161 Sa~ 163 (183)
T 3kkq_A 161 SAK 163 (183)
T ss_dssp BCS
T ss_pred ccC
Confidence 766
No 42
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.67 E-value=4.9e-16 Score=116.81 Aligned_cols=118 Identities=16% Similarity=0.071 Sum_probs=80.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
...+|+++|++|+|||||+|++++...+.... ..|.........+ ++..+.+|||||...+...... ..+|+++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45899999999999999999999876322221 2233344445555 6789999999998877655443 8899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCC-CcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGK-NCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|++++.+... ...+..+...... ....|+++|+||+|....
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 9999986544333 2334444332211 024679999999996543
No 43
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.67 E-value=9e-16 Score=116.03 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE--eCCcEEEEEeCCCCCCCCCCC---cC-
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL--KDGQVVNVIDTPGLFDFSAGS---EF- 88 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~---~~- 88 (240)
+.....+|+++|.+|+|||||++.+.+....... .+...........+ .....+.+|||||...+.... ..
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET---LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGG---GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce---eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3345689999999999999999999986432211 11111111111122 134678999999998876654 23
Q ss_pred -CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 -DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 -~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+|++++|+|+++++......+..++.+........|+++|+||+|.+.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 88999999999997632333344444444321122478999999999664
No 44
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=6.3e-16 Score=118.16 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|+|++......... +.+.........+ ++ ..+.+|||||...+...... ..+|+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT--TIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSC--CCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCC--cccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 348999999999999999999997764333222 2233333334444 55 47899999998877655444 88999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
+++|+|++++.+... ..++..+..... ...|+++|+||+|.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl 137 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDM 137 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCC
Confidence 999999985544433 344455554432 23689999999996
No 45
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.67 E-value=6.4e-16 Score=115.66 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
...+|+++|++|+|||||+|++++.. .....+ |.........+ ++..+.+|||||+..+...... ..+|+++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISP----TLGFNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCC----CSSEEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccc----cCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 44999999999999999999999876 222222 22333445555 7889999999998766554443 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|++++.+..+. ..+..+..... ....|+++|+||+|....
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA 134 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC
Confidence 99999876655542 33333332111 123689999999996543
No 46
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.67 E-value=5.4e-16 Score=116.47 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCC-CCCcC--CCce
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFS-AGSEF--DEIH 92 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~-~~~~~--~~~~ 92 (240)
...+|+++|++|+|||||+|++++...........+. ........+ ++ ..+.+|||||...+. ..... ..+|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV--DFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC--CEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce--EEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 4589999999999999999999976653333222222 222233334 44 478999999987654 22222 8899
Q ss_pred EEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 93 AALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++|+|+++..+... ..++..+...+. ....|+++|+||+|...
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 9999999986544443 344555555432 22367999999999644
No 47
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.67 E-value=2.6e-15 Score=114.04 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=88.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|.+++........... .........+ ++. .+.+|||||...+...... ..+|+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK---ADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTC---CEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc---ceEEEEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 44899999999999999999999876432222111 1111223333 443 6889999998765433322 77899
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
+++|+++++..+... ..++..+...... ...|+++|+||+|.........+ .+..+....+..++..+.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa 158 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRAEQWNVNYVETSA 158 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHHTCEEEEECT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHH---------HHHHHHHHhCCeEEEEeC
Confidence 999999986544443 3444455544332 23679999999996543211111 233444555666666665
Q ss_pred CC
Q 036363 173 KT 174 (240)
Q Consensus 173 ~~ 174 (240)
..
T Consensus 159 ~~ 160 (206)
T 2bov_A 159 KT 160 (206)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 48
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.66 E-value=1.1e-15 Score=123.19 Aligned_cols=111 Identities=18% Similarity=0.289 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC-C--------CCCCCc--C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF-D--------FSAGSE--F 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~-~--------~~~~~~--~ 88 (240)
.+|+|+|++|+|||||+|+|+|........ ..++|.........+ ++..+.++||||+. . +..... .
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 689999999999999999999986532221 223343333333444 77789999999997 2 222111 2
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+|++++|+|+++ ++..+...++.+. . ...|+++++||+|...
T Consensus 87 ~~~D~vl~Vvd~~~-~~~~~~~i~~~l~----~-~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 87 GDVELVIFVVEGTR-WTPDDEMVLNKLR----E-GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CCEEEEEEEEETTC-CCHHHHHHHHHHH----S-SSSCEEEEEESTTTCC
T ss_pred hcCCEEEEEEeCCC-CCHHHHHHHHHHH----h-cCCCEEEEEECcccCc
Confidence 88999999999986 8888776665553 1 2367999999999654
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.66 E-value=3.2e-16 Score=116.27 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++...........+.+... ..... .+ ..+.+|||||...+...... ..+|+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEE--EEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 45899999999999999999999876533322222222222 22233 33 46789999997765433322 78899
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+.... .++..+..... ...|+++|+||+|...
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA 134 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 9999999865444432 34444544432 2468999999999653
No 50
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.66 E-value=4.7e-16 Score=116.02 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
...+|+++|.+|+|||||+|++++... .......+.+ .....+ ++..+.+|||||...+...... ..+|+++
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN----VEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS----CEEEEE-TTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee----eEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 458999999999999999999998765 2222222222 233445 7788999999999877655444 8899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+.... ..+..+..... ....|+++|+||+|...
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKE 136 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCccc
Confidence 99999977666542 33433332210 13468999999999654
No 51
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.66 E-value=4.1e-16 Score=115.98 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=71.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
....+|+++|++|+|||||++++++...........+. ........+. ....+.+|||||...+...... ..+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA--DFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCC--SCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccce--EEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34589999999999999999999987643322222222 2222233331 1347899999998877655444 8899
Q ss_pred EEEEEEECCCCCCHHH-HHHHHHHHHHhC--CCcCCeEEEEEeCCCCC
Q 036363 93 AALVVFSVRSRFSQEE-EATLHSLQTLFG--KNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~ 137 (240)
++++|+|++++.+... ..++..+..... .....|+++|+||+|..
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 9999999986544443 344445554432 11336799999999964
No 52
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.66 E-value=2.2e-15 Score=113.04 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
+..+|+++|++|+|||||+|++++..... ..++.+ .......+ ++..+.+|||||+..+...... ..+|+++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~----~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG----VNLETLQY-KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT----CCEEEEEE-TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc----eEEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 34899999999999999999998766432 222222 22334445 6788999999999887665554 8999999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|++++.+.... ..+..+.... .....|+++|+||+|....
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcCC
Confidence 99999976665542 3333332211 1124689999999996544
No 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=2.6e-15 Score=111.59 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=74.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++........ ....+.......... ++. .+.+|||||...+...... ..+|+
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 34899999999999999999999876532221 122222222222333 443 6889999998877655444 88999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++|+|++++.+..+ ..++..+..... ...|+++|+||+|....
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcc
Confidence 999999986544443 344455554432 34689999999996653
No 54
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.6e-15 Score=110.20 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCC--cC--CCce
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGS--EF--DEIH 92 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~--~~--~~~~ 92 (240)
..+|+++|++|+|||||+|++++....... ...+.+... ....+ ++. .+.+|||||........ .. ..+|
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 79 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGS 79 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEE--EEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCS
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeE--EEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCC
Confidence 489999999999999999999987653322 223333322 22333 443 67899999987642111 11 7789
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++++|++++++.+.... .++..+..... ....|+++|+||+|....
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC 126 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence 99999999865554443 33333433211 123679999999996543
No 55
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.66 E-value=8.1e-15 Score=109.99 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|.+|+|||||+|+|++......... .+.........+ ++ ..+.+|||||...+...... ..+|+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP---TIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT---TCCEEEEEEEEE-TTEEEEEEEEECCC-----------CTTCSE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCC---ccceEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 347999999999999999999998754322111 111111223333 44 35889999998876555444 88999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+++++..+..+. .++..+...... ...|+++|+||+|...
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 9999999865554443 344444444321 2367999999999654
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.66 E-value=5.6e-16 Score=114.94 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=89.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++........ ...+.........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 3799999999999999999999765433222 22233333333444 44 37889999998766544433 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
++|+|++++.+... ..++..+....+. ..|+++|+||+|.........+ ....+....+..++..+..
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVSTE---------EGERKAKELNVMFIETSAK 159 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGCCSCHH---------HHHHHHHHHTCEEEEEBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccCcCCHH---------HHHHHHHHcCCeEEEEeCC
Confidence 99999985444333 3444555444332 3679999999996543211111 1233344456666666655
Q ss_pred C
Q 036363 174 T 174 (240)
Q Consensus 174 ~ 174 (240)
.
T Consensus 160 ~ 160 (179)
T 2y8e_A 160 A 160 (179)
T ss_dssp T
T ss_pred C
Confidence 4
No 57
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.66 E-value=6.2e-16 Score=117.40 Aligned_cols=142 Identities=10% Similarity=0.065 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++++++...........+.+. ....... . ...+.+|||||+..+...... ..+|++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEE--EEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE--EEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 47999999999999999999998765433222222222 2222333 3 347889999998765433222 789999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
++|+|++++.+... ..++..+.... ....|+++|+||+|......... .....+....+..++..+..
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~ 153 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSS---------ERGRQLADHLGFEFFEASAK 153 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCSCH---------HHHHHHHHHHTCEEEECBTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcccccCH---------HHHHHHHHHCCCeEEEEECC
Confidence 99999986544443 23444444332 12368999999999654321111 12334444555566555544
Q ss_pred C
Q 036363 174 T 174 (240)
Q Consensus 174 ~ 174 (240)
.
T Consensus 154 ~ 154 (203)
T 1zbd_A 154 D 154 (203)
T ss_dssp T
T ss_pred C
Confidence 3
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.66 E-value=6.4e-16 Score=117.16 Aligned_cols=115 Identities=20% Similarity=0.109 Sum_probs=75.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCce
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
....+|+++|++|+|||||++++++.........+ +.......... ++. .+.+|||||...+...... ..+|
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT---AFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CC---SSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc---ccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 34589999999999999999999987632221111 11111122333 443 5679999999887665544 8899
Q ss_pred EEEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++|+|++++.+..+. .++..+..... ..|+++|+||+|...
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 99999999866555543 34555554432 367999999999654
No 59
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.66 E-value=9.8e-16 Score=121.87 Aligned_cols=108 Identities=20% Similarity=0.192 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------- 88 (240)
.+|+++|.+|+|||||+|+|+|.....+. ..+.|.........+ .+..+.+|||||+.++......
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~--~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEE--CTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 79999999999999999999998743332 245666666666666 6788999999999988743211
Q ss_pred ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+|++++|+|+++ .......+..+.+. ..|+++|+||+|..
T Consensus 81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN--LERNLYLTLQLLEL-----GIPCIVALNMLDIA 125 (274)
T ss_dssp HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHH-----TCCEEEEEECHHHH
T ss_pred HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhc-----CCCEEEEEECccch
Confidence 68999999999984 12333444444433 26799999999954
No 60
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.66 E-value=1.8e-15 Score=124.99 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=73.4
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--cce---------------------------
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG--VTS--------------------------- 56 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~--~t~--------------------------- 56 (240)
.++++++.+ ..|+|||++|||||||+|+|+|....+.+..... .+.
T Consensus 26 ~l~~i~~~l-----p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 26 ALPTLWDSL-----PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp CC----CCC-----CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccC-----CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 344444555 3999999999999999999999765333321110 000
Q ss_pred -----------------------eEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------------CCceEEEEEE
Q 036363 57 -----------------------TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------------DEIHAALVVF 98 (240)
Q Consensus 57 -----------------------~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------------~~~~~~l~v~ 98 (240)
.........+....+.+|||||+..+...... ..+|++++|+
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 00001111112446899999999987442111 7899999998
Q ss_pred ECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 99 SVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 99 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
++.+. .......+..+... .. ...++++|+||+|.+.+.
T Consensus 181 ~~~~~-~~~~~~~~~l~~~~-~~-~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 181 SPANQ-DLATSDAIKISREV-DP-SGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp EETTS-CGGGCHHHHHHHHS-CT-TCTTEEEEEECGGGCCTT
T ss_pred ecccC-CcCCHHHHHHHHHh-cc-cCCCEEEEEeCCccCCCc
Confidence 77522 22222333333332 22 235799999999977543
No 61
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.66 E-value=8e-16 Score=118.04 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+|+|.+|+|||||+++++...+.....++.+..... ..... ++ ..+.+|||+|...+...... +.+++++
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~--k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEE--EEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEE--EEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 799999999999999999998765433322222222211 22222 33 36789999999888765544 8999999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (240)
+|++++++.+... ..++..+....+. ..|++||.||+|.........+ ....+....+..|+..+...
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~--~~piilVgNK~Dl~~~r~V~~~---------e~~~~a~~~~~~~~e~SAkt 159 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIE---------EGERKAKELNVMFIETSAKA 159 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSCHH---------HHHHHHHHHTCEEEEEBTTT
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccchHhcCcccHH---------HHhhHHHHhCCeeEEEeCCC
Confidence 9999997766665 4566666665544 3689999999995433211111 22344555566666555543
No 62
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.65 E-value=4.5e-15 Score=110.69 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=56.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++++++........ .+.+.........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp EEEEEEECCCCC----------------CHH--HHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 4899999999999999999999765322211 11222222333444 44 57889999999877655444 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVND 127 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCc
Confidence 99999986544443 234444544322 2368999999999654
No 63
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=3e-16 Score=119.67 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=78.3
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFS 83 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~ 83 (240)
...+..+..... .+|+++|++|+|||||+|++++...........+... ...... ++ ..+.+|||||...+.
T Consensus 14 ~~~~~~~~~~~~--~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 14 GTENLYFQSMIR--KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY---VADIEV-DGKQVELALWDTAGQEDYD 87 (207)
T ss_dssp -----CGGGSEE--EEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE---EEEEEE-TTEEEEEEEEECTTCTTCT
T ss_pred cccccccccccC--cEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE---EEEEEE-CCEEEEEEEEECCCcHHHH
Confidence 344444544444 8999999999999999999998764322221111111 122333 44 367899999998876
Q ss_pred CCCcC--CCceEEEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 84 AGSEF--DEIHAALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..... ..+|++++|+|++++.+.... .++..+..... ..|+++|+||+|....
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD 144 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc
Confidence 55544 889999999999855444432 34445544322 3679999999996543
No 64
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=9.8e-16 Score=114.23 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
...+|+++|++|+|||||++++++.... ......+ .......+ ++..+.+|||||+..+...... ..+|+++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG----FNVETLSY-KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTT----CCEEEEEE-TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcC-ccCCcCc----cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3499999999999999999999976542 2222222 22233445 6788999999999887665444 8999999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+.... ..+..+.... .....|+++|+||+|...
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPG 133 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCC
Confidence 99999877665542 3333332211 023478999999999654
No 65
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.65 E-value=3.8e-16 Score=116.05 Aligned_cols=119 Identities=22% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DE 90 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~ 90 (240)
++....+|+++|++|+|||||+|++++.......... +.........+ ++ ..+.+|||||...+...... ..
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT---IEDSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTT---CCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCC---cCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 4445689999999999999999999987543222111 11111122333 44 36789999998877554443 78
Q ss_pred ceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 91 IHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 91 ~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|++++|+++++..+... ..++..+...... ...|+++|+||+|...
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLES 128 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGG
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 899999999986444443 3444444343332 2367999999999654
No 66
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.65 E-value=1.3e-15 Score=112.10 Aligned_cols=142 Identities=21% Similarity=0.128 Sum_probs=79.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC---CCceE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF---DEIHA 93 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~---~~~~~ 93 (240)
..+|+++|++|+|||||++++++......... ..+.........+ ++ ..+.+|||||...+...... ..+|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 78 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEM--ENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA 78 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccC--CCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence 37899999999999999999997654322222 1222223233334 44 36779999999887552222 67899
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
+++|++++++.+... ..++..+...... ...|+++|+||+|......... .....+....+..++..+.
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 79 FLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSL---------EEGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCH---------HHHHHHHHHTTCEEEECBT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCH---------HHHHHHHHHcCCcEEEecC
Confidence 999999986544433 3444444443321 2367999999999653321111 1233445555566655554
Q ss_pred C
Q 036363 173 K 173 (240)
Q Consensus 173 ~ 173 (240)
.
T Consensus 149 ~ 149 (169)
T 3q85_A 149 A 149 (169)
T ss_dssp T
T ss_pred c
Confidence 4
No 67
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.65 E-value=1.6e-15 Score=114.39 Aligned_cols=117 Identities=12% Similarity=0.050 Sum_probs=75.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
......+|+++|++|+|||||++++++..... .. .|.........+ .+..+.+|||||...+...... ..+|
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TI----PTIGFNVETVEY-KNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EE----EETTEEEEEEEE-TTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cC----CcCceeEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 33445999999999999999999998766432 11 122233344555 7788999999999877655433 8899
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++|+|++++.+.... ..+..+.... .....|+++|+||+|...
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCC
Confidence 99999999866555432 3333332211 112468999999999644
No 68
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.65 E-value=2.1e-15 Score=118.90 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=79.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------- 88 (240)
..+|+++|++|+|||||+|+|+|.....+.. .+.|.......... .+..+.+|||||+..+......
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~--pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 3789999999999999999999977543332 36666666555655 6789999999999988654311
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+|++++|+|+++ + .....++..+.+ ...|+++|+||+|..
T Consensus 82 ~~~d~ii~V~D~t~-~-~~~~~~~~~l~~-----~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 82 GDADLVILVADSVN-P-EQSLYLLLEILE-----MEKKVILAMTAIDEA 123 (258)
T ss_dssp SCCSEEEEEEETTS-C-HHHHHHHHHHHT-----TTCCEEEEEECHHHH
T ss_pred cCCCEEEEEeCCCc-h-hhHHHHHHHHHh-----cCCCEEEEEECcCCC
Confidence 58999999999984 2 222333333332 136799999999954
No 69
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.65 E-value=9.5e-16 Score=112.43 Aligned_cols=115 Identities=23% Similarity=0.122 Sum_probs=63.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++....... ...+.+.. ..... .+ ..+.+|||||...+...... ..+|++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYD---RSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY 76 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE---EEEEE-TTEEEEEEEEECC---------------CCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceE---EEEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence 379999999999999999999987643221 12222222 12222 33 36789999999887655544 889999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++|++++++.+.... .++..+..... ....|+++|+||+|....
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 77 VIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc
Confidence 999999865544432 33344433221 223679999999996544
No 70
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=4.3e-15 Score=111.30 Aligned_cols=113 Identities=13% Similarity=0.112 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+++|++|+|||||+|++++.... ....+.+ .......+ ++..+.+|||||...+...... ..+|++++
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG----SNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC----SSCEEEEE-TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc----cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 489999999999999999999976654 2222222 22233445 7788999999999876655443 88999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|++++.+.... ..+..+..... ....|+++|+||+|...
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKE 131 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcC
Confidence 9999977666543 33333332211 13478999999999654
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.65 E-value=1e-15 Score=111.92 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|++|+|||||+|.+++.......... +.......... ++ ..+.+|||||...+...... ..+|+++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPT---IEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT---CCEEEEEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCc---cceEEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 68999999999999999999987543222211 11111222233 33 35789999998765443332 7789999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (240)
+|+++++..+... ..++..+...... ...|+++|+||+|..... .. ......+....+.+++..+...
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~~~~~~Sa~~ 148 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAART-VE---------SRQAQDLARSYGIPYIETSAKT 148 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCC-SC---------HHHHHHHHHHHTCCEEEECTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhcc-cC---------HHHHHHHHHHcCCeEEEecCCC
Confidence 9999985544443 3444455444332 236799999999965432 11 1123344455566666666554
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.65 E-value=1.4e-15 Score=114.21 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC-----------CcEEEEEeCCCCCCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD-----------GQVVNVIDTPGLFDFSAGS 86 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~l~DtpG~~~~~~~~ 86 (240)
...+|+++|++|+|||||+|++++...........+.+.. ....... . ...+.+|||||+..+....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 3589999999999999999999986543222222221111 0122222 3 2478999999986553322
Q ss_pred cC--CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 87 EF--DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 87 ~~--~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.. ..+|++++|+|++++.+..+ ..++..+..... ....|+++|+||+|...
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED 141 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22 78999999999986555444 344444544332 12367999999999654
No 73
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.65 E-value=1.2e-15 Score=121.22 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
.+|+++|++|+|||||+|+|+|.....+. ..+.|.........+ .+..+.+|||||+.++...... .
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGN--WPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEE--CTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 79999999999999999999998753332 245566666666666 7888999999999987663322 6
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+|++++|+|+++. ......+..+.+. + ..|+++|+||+|..
T Consensus 81 ~~d~vi~v~D~~~~--~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 81 NADVIVDIVDSTCL--MRNLFLTLELFEM-E---VKNIILVLNKFDLL 122 (271)
T ss_dssp CCSEEEEEEEGGGH--HHHHHHHHHHHHT-T---CCSEEEEEECHHHH
T ss_pred CCcEEEEEecCCcc--hhhHHHHHHHHhc-C---CCCEEEEEEChhcC
Confidence 79999999999842 2233333333322 1 16799999999943
No 74
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.64 E-value=8.7e-16 Score=112.47 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++........... .......... .+. .+.+|||||...+...... ..+|++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~ 78 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI---EDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGF 78 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC---CEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCc---ceeEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 3799999999999999999999765433222211 1111223333 443 4789999998765433322 778999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
++|++++++.+... ...+..+...... ...|+++|+||+|......... .....+....+.+++..+..
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~ 148 (167)
T 1kao_A 79 ILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSS---------SEGRALAEEWGCPFMETSAK 148 (167)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCH---------HHHHHHHHHHTSCEEEECTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCH---------HHHHHHHHHhCCCEEEecCC
Confidence 99999986544443 3444455544332 2367999999999653321111 11233444455566666655
Q ss_pred C
Q 036363 174 T 174 (240)
Q Consensus 174 ~ 174 (240)
.
T Consensus 149 ~ 149 (167)
T 1kao_A 149 S 149 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.64 E-value=5.8e-16 Score=115.78 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=76.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++........ ...+.........+ ++ ..+.+|||||...+...... ..+|+
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSN--HTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC--CCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 34899999999999999999999876433222 22222232333334 44 47889999998765433222 78999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+.... .++..+..... ...|+++|+||+|...
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDA 129 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 9999999865444432 34444444322 2468999999999643
No 76
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=129.68 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=76.1
Q ss_pred cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcceeEEEEEEEEeC-C--cEEEEEeCCCCCC
Q 036363 7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMHRTVLKD-G--QVVNVIDTPGLFD 81 (240)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~-~--~~~~l~DtpG~~~ 81 (240)
+++++|.+.+|...+++|+|+||+|||||+|+|+|......... ..+.+.. ...+.... + ..++++|+||+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhh
Confidence 78899999999555599999999999999999999853211111 1122221 11121112 1 2678999999976
Q ss_pred CCCC-------------------------Cc---C---CCceEEE-EEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEE
Q 036363 82 FSAG-------------------------SE---F---DEIHAAL-VVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIV 129 (240)
Q Consensus 82 ~~~~-------------------------~~---~---~~~~~~l-~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~ 129 (240)
.... .. . ..+|+++ ++.++..+++..+..+++.+. ...|+|+
T Consensus 108 ~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~ 181 (427)
T 2qag_B 108 QINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIP 181 (427)
T ss_dssp -CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEE
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEE
Confidence 4221 00 0 2245544 455666778888877766663 2368999
Q ss_pred EEeCCCCCCCC
Q 036363 130 VFSGRDELEAN 140 (240)
Q Consensus 130 v~~~~D~~~~~ 140 (240)
|+||+|.+.+.
T Consensus 182 Vi~KtD~Lt~~ 192 (427)
T 2qag_B 182 IIAKADAISKS 192 (427)
T ss_dssp EESCGGGSCHH
T ss_pred EEcchhccchH
Confidence 99999988653
No 77
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.64 E-value=1.3e-15 Score=129.67 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|++|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.++..... ..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC--------------------CCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 789999999999999999999975322221 234555555555666 888999999999987543221 18
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
.+|++++|+|++++.+......+..+...+. ..|+++|+||+|.....
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAHP---AAKFLTVANKLDRAANA 359 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEEEEEEECTTSCTTT
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCEEEEEECcCCCCcc
Confidence 8999999999998777743323333333333 36899999999966543
No 78
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.64 E-value=4.7e-16 Score=114.09 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEE-EEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-HRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
..+|+++|++|+|||||+|++++......... |....+ ..... + ...+.+|||||...+...... ..+|+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 77 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDP----TIEDSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQG 77 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCC----CSEEEEEEEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----CccceEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCE
Confidence 37999999999999999999998654322221 111111 22222 3 336789999998876554333 78899
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|++++++.+... ..++..+...... ...|+++|+||+|...
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLED 122 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccc
Confidence 999999986544443 3444555554332 2367999999999654
No 79
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=2.7e-15 Score=113.08 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||++++++...........+... .....+ ++ ..+.+|||||...+...... ..+|+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY---AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE---EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee---EEEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 447999999999999999999998754322222111111 122333 33 46789999999887665544 88999
Q ss_pred EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++|+|++++.+.... .++..+....+ ..|+++|+||+|....
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence 9999999865554443 34555555432 3679999999996543
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=3.5e-16 Score=115.27 Aligned_cols=117 Identities=23% Similarity=0.197 Sum_probs=75.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++...........+.+.. ..... .+ ..+.+|||||...+...... ..+|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 78 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAF 78 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEE
Confidence 479999999999999999999987643322222222211 11222 33 36789999998765433322 778999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++|++++++.+... ..++..+.+..+.....|+++|+||+|....
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 79 ILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 99999985544433 3455555554432224679999999996543
No 81
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.63 E-value=2.5e-15 Score=127.24 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--cC---------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--EF--------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~--------- 88 (240)
.+|+|||.+|+|||||+|+|++....... ...+.|....+....| ++..+.+|||||+....... ..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999997643222 2356676666677778 88899999999998642111 10
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+|++++|+|++.+++..+.....++... ..|+++|+||+|..
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENL 123 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 899999999999988888876666666532 25799999999953
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.63 E-value=3e-15 Score=112.34 Aligned_cols=116 Identities=19% Similarity=0.088 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
...+|+++|++|+|||||+|++++........ .|....+..... .+..+.+|||||...+...... ..+|+++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMI----PTVGFNMRKITK-GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----CCCSEEEEEEEE-TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccC----CCCceeEEEEEe-CCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 34899999999999999999999765432222 233333344455 7788999999998765544333 8899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|+++..+... ...+..+..... ....|+++|+||+|....
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC
Confidence 9999986555443 233333322111 124679999999996543
No 83
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.63 E-value=1.2e-15 Score=123.26 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC-----CCCCcC--CCce
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF-----SAGSEF--DEIH 92 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~-----~~~~~~--~~~~ 92 (240)
.+|+++|++|+|||||+|++++....... ...+.|....+....+.++..+.+|||||...+ ...... ..+|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 79999999999999999999886322111 124456666655555435678999999999876 332222 7899
Q ss_pred EEEEEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++|+|++++.+..+... ..++..........|+++|+||+|...
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 9999999997777666533 333333221122378999999999654
No 84
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.63 E-value=5.7e-15 Score=119.75 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC--CCcc--eeEE-----------------------------------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASS--SGVT--STCE----------------------------------- 59 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~--~~~t--~~~~----------------------------------- 59 (240)
..+|+++|.+|+|||||+|+|+|....+.+... ...+ ....
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 379999999999999999999998753332210 0000 0000
Q ss_pred ------------------EEEEEEeCCcEEEEEeCCCCCCCCCC-----C-cC---------CCceEEEEEEEC-CCCCC
Q 036363 60 ------------------MHRTVLKDGQVVNVIDTPGLFDFSAG-----S-EF---------DEIHAALVVFSV-RSRFS 105 (240)
Q Consensus 60 ------------------~~~~~~~~~~~~~l~DtpG~~~~~~~-----~-~~---------~~~~~~l~v~~~-~~~~~ 105 (240)
...+..+.+..+.+|||||+...... . .. ..+|++++|+++ +..+.
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 00011223457999999999763211 0 00 788999999987 44444
Q ss_pred HHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 106 QEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 106 ~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
..+ ...+..+. ....|+++|+||+|.....
T Consensus 184 ~~~~~~i~~~~~-----~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 184 NSDALQLAKEVD-----PEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp TCSHHHHHHHHC-----SSCSSEEEEEECTTSSCSS
T ss_pred hhHHHHHHHHhC-----CCCCcEEEEEcCcccCCcc
Confidence 333 24444442 2346799999999977553
No 85
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.63 E-value=8.4e-16 Score=112.66 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++...........+ ........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 79 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC---EEEEEEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcc---eEEEEEEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEE
Confidence 38999999999999999999998764322221111 111122333 44 36889999998765433222 788999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+++++..+... ..++..+...... ...|+++|+||+|...
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLED 123 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccc
Confidence 99999986544443 3444555554432 2367999999999654
No 86
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.63 E-value=1e-15 Score=113.40 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++........... +.........+ ++ ..+.+|||||...+...... ..+|+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI--GVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC--SEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--eeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34899999999999999999999765432222222 22222233334 44 37889999997665433322 78999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGK--NCFDYMIVVFSGRDEL 137 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~i~v~~~~D~~ 137 (240)
+++|++++++.+... ..++..+...... ....|+++|+||+|..
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999986544443 3444555544331 1236799999999965
No 87
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=8.2e-16 Score=116.20 Aligned_cols=116 Identities=24% Similarity=0.191 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|+|++...........+.+.. ..... ++ ..+.+|||||...+...... ..+|++
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR---QVISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE---EEEEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee---EEEEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 489999999999999999999986543222222221111 11222 33 36789999998765433222 778999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|++++++.+... ..++..+....+.....|+++|+||+|...
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99999985444443 334555555443223467999999999654
No 88
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.63 E-value=6.5e-16 Score=118.63 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=78.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|.+|+|||||+|+|++...........+.+... .......+ ..+.+|||||...+...... ..+|+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 45899999999999999999999766432222222222111 11111122 46899999998877655444 88999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+..+. .++..+....+. ..|+++|+||+|...
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC-
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcc
Confidence 9999999966555543 444555555433 267999999999654
No 89
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=115.48 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=84.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||+|++++........... +.......... ++ ..+.+|||||...+...... ..+|++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI--GVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcc--cceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4899999999999999999999876533322222 22222233333 44 47899999998766554443 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
++|+|++++.+... ..++..+..... ...|+++|+||+|.......... ....+....+..++..+..
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~---------~~~~~~~~~~~~~~~~SA~ 170 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFL---------EASRFAQENELMFLETSAL 170 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHH---------HHHHHHHHTTCEEEEECTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHH---------HHHHHHHHcCCEEEEEeCC
Confidence 99999986544443 334444444322 23689999999996433211111 1233444455566666654
Q ss_pred C
Q 036363 174 T 174 (240)
Q Consensus 174 ~ 174 (240)
.
T Consensus 171 ~ 171 (200)
T 2o52_A 171 T 171 (200)
T ss_dssp T
T ss_pred C
Confidence 3
No 90
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.63 E-value=3.7e-15 Score=109.53 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
.+|+++|++|+|||||+|+|++.....+.. .+.|.........+ ++..+.+|||||+..+...... .
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCC--CCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 789999999999999999999976433222 23333333334445 6788999999999887543211 3
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+|++++|+|+++. .....++..+.+ . ..|+++|+||+|..
T Consensus 81 ~~~~~i~v~D~~~~--~~~~~~~~~~~~---~--~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 81 KPDLVVNIVDATAL--ERNLYLTLQLME---M--GANLLLALNKMDLA 121 (165)
T ss_dssp CCSEEEEEEETTCH--HHHHHHHHHHHH---T--TCCEEEEEECHHHH
T ss_pred CCCEEEEEecCCch--hHhHHHHHHHHh---c--CCCEEEEEEchHhc
Confidence 78999999999841 122233333332 1 36799999999943
No 91
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.63 E-value=1.1e-15 Score=115.25 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++...........+.+. ...... ++. .+.+|||||...+...... ..+|+
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF---SHVMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee---EEEEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 347999999999999999999998764322222111111 112223 443 4589999998877665554 88999
Q ss_pred EEEEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+..+ ..++..+..... ..|+++|+||+|...
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 999999996655554 234444443322 368999999999654
No 92
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.63 E-value=1e-15 Score=129.48 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=82.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+++|.+|+|||||+|+|+|......+. ..++|.........+ ++..+.+|||||+.+.......
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 34899999999999999999999986532222 234455444445556 7788999999998765432111
Q ss_pred ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
..+|++++|+|++++.+.++..++..+.. ...++++|+||+|.....
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCcc
Confidence 67899999999998999988877666643 236899999999976543
No 93
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.62 E-value=1.3e-15 Score=113.05 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=89.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC---cEEEEEeCCCCCCCCCCCcC--CCce
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG---QVVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
...+|+++|++|+|||||++++++...........+ .........+ .+ ..+.+|||||...+...... ..+|
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEEe-CCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 348999999999999999999998754322222222 2222333444 43 57899999998877655444 8899
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHHhCC-CcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEE
Q 036363 93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGK-NCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF 170 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (240)
++++|+|++++.+..+. .++..+...... ...+++++|+||+|......... .....+....+..++..
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~ 152 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP---------EKHLRFCQENGFSSHFV 152 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH---------HHHHHHHHHHTCEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH---------HHHHHHHHHcCCcEEEE
Confidence 99999999865554432 344444433211 12355899999999643221111 12234444455566666
Q ss_pred eCCC
Q 036363 171 DNKT 174 (240)
Q Consensus 171 ~~~~ 174 (240)
+...
T Consensus 153 Sa~~ 156 (178)
T 2hxs_A 153 SAKT 156 (178)
T ss_dssp CTTT
T ss_pred eCCC
Confidence 6553
No 94
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.9e-15 Score=116.63 Aligned_cols=116 Identities=20% Similarity=0.162 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+|+|++|+|||||+++|++...........+. ........+ ++ ..+.+|||||...+...... ..+|+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV--EFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CC--SEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc--eeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 3489999999999999999999987653332222222 222233334 44 47899999999887665554 88999
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+..+ ..++..+..... ...|+++|+||+|...
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 999999986555544 234444544322 2368999999999654
No 95
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.62 E-value=2e-15 Score=114.58 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|.+|+|||||++++++...........+.... ....+ ++ ..+.+|||||...+...... ..+|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE---EEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE---EEEEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 3479999999999999999999987653332222222221 12233 44 36789999998877655544 88999
Q ss_pred EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++|+|++++.+.... .++..+..... ..|+++|+||+|....
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC
Confidence 9999999865444443 34444444322 3679999999996654
No 96
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.62 E-value=4.5e-15 Score=110.78 Aligned_cols=142 Identities=19% Similarity=0.191 Sum_probs=87.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|+|++.......... +.........+ .+ ..+.+|||||...+...... ..+|+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT---KADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTT---CCEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCc---cceEEEEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 3489999999999999999999987643222211 11111222333 44 36789999998765433322 78899
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
+++|+++++..+... ..++..+...... ...|+++|+||+|......... ..+..+....+..++..+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa 162 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSV---------EEAKNRAEQWNVNYVETSA 162 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCH---------HHHHHHHHHTTCEEEECCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCH---------HHHHHHHHHcCCeEEEeCC
Confidence 999999985544433 3444555555432 2367999999999654321111 1234445555555555554
Q ss_pred C
Q 036363 173 K 173 (240)
Q Consensus 173 ~ 173 (240)
.
T Consensus 163 ~ 163 (187)
T 2a9k_A 163 K 163 (187)
T ss_dssp T
T ss_pred C
Confidence 4
No 97
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.62 E-value=1e-15 Score=112.03 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|++|+|||||++++++..... ..+ |.......... .+..+.+|||||+..+...... ..+|++++|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 74 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIP----TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 74 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCC----CSSCCEEEEEC-SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccC----cCceeEEEEEE-CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEE
Confidence 379999999999999999998765432 211 22222334444 6788999999999765433222 889999999
Q ss_pred EECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 98 FSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 98 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|++++.+.... ..+..+.... .....|+++|+||+|....
T Consensus 75 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 75 VDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC
T ss_pred EECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcCC
Confidence 999866554432 2333332211 1123689999999996543
No 98
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.62 E-value=2.5e-15 Score=115.20 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
..+|+++|.+|+|||||++++++...........+.+. ....... ....+.+|||||...+...... ..+|+++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY---TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE---EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 48999999999999999999998764332222222111 1112221 2346889999999877665554 8899999
Q ss_pred EEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+... ..++..+..... ..|+++|+||+|...
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT 145 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 9999997666655 345555555432 368999999999543
No 99
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.62 E-value=4.7e-16 Score=119.79 Aligned_cols=118 Identities=21% Similarity=0.151 Sum_probs=77.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
....+|+++|.+|+|||||+|+++............+.+.......... ....+.+|||||...+...... ..+|++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 3458999999999999999999554332222222233333332222211 2346889999998877655544 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+... ..++..+...+. ..|+++|+||+|...
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 99999996555444 344455554432 367999999999654
No 100
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.62 E-value=1.6e-15 Score=113.42 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||++++++...........+... ...... ++ ..+.+|||||...+...... ..+|+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 348999999999999999999998654322222111111 112223 32 46789999998877655444 88999
Q ss_pred EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+.... .++..+..... ..|+++|+||+|...
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence 9999999865555443 33444544332 368999999999543
No 101
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.61 E-value=3.3e-16 Score=118.07 Aligned_cols=117 Identities=14% Similarity=0.157 Sum_probs=74.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCce
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
....+|+++|++|+|||||+|+|++......... ..+.........+ ++ ..+.+|||||...+...... ..+|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKS--TVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------C--CTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCC--ccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 3457899999999999999999998765333222 2223333333444 44 36889999997655332222 7889
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++|+|+++..+..+. .++..+..... ...|+++|+||+|...
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 99999999865555543 33334443322 2368999999999643
No 102
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=114.95 Aligned_cols=115 Identities=21% Similarity=0.149 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||++++++.......... +.......... ++. .+.+|||||...+...... ..+|+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 108 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT---VFERYMVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASV 108 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCC---CCEEEEEEEEE-TTEEEEEEEEEC---------------CEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc---cceeEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence 3479999999999999999999987643222211 11111122333 443 6789999998877655544 88999
Q ss_pred EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+++|+|++++.+.... .++..+..... ..|+++|+||+|....
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGSC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhcc
Confidence 9999999865554443 34444544322 3679999999996543
No 103
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.61 E-value=1.9e-15 Score=112.79 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++++++...........+... ...... ++. .+.+|||||+..+...... ..+|++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE---EEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee---EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 37999999999999999999997654322222221111 122233 443 5669999999877655544 889999
Q ss_pred EEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 95 l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++|+|++++.+..+. .++..+....+ ..|+++|+||+|....
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc
Confidence 999999865555543 34555554433 3679999999996543
No 104
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=4.6e-16 Score=117.89 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=71.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||+|++++...........+.+... ....+ ++ ..+.+|||||...+...... ..+|+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 44899999999999999999999876432222222222222 22333 33 46889999998765433222 77899
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+++|+|++++.+... ..++..+..... ...|+++|+||+|..
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccc
Confidence 999999986555444 334444443322 236799999999954
No 105
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.61 E-value=2e-15 Score=115.05 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=76.9
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC-
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF- 88 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~- 88 (240)
+........+|+++|++|+|||||++.+++...........+... .....+ ++ ..+.+|||||...+......
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~ 96 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEI-DTQRIELSLWDTSGSPYYDNVRPLS 96 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEES-SSSEEEEEEEEECCSGGGTTTGGGG
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE---EEEEEE-CCEEEEEEEEeCCCcHhhhHHHHhh
Confidence 333334558999999999999999999998764322121111111 112223 32 46889999998877655444
Q ss_pred -CCceEEEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 -DEIHAALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 -~~~~~~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+|++++|+|++++.+.... .++..+..... ..|+++|+||+|...
T Consensus 97 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 146 (205)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence 889999999999865554443 34445544332 368999999999543
No 106
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.60 E-value=5.2e-15 Score=125.87 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=83.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------- 88 (240)
...+|+++|.+|+|||||+|+|++......+.. .++|.......+.+ ++..+.+|||||+.........
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~-~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV-AGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCC-CCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 458999999999999999999998764332222 34444443344555 7789999999998654322111
Q ss_pred ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
..+|++++|+|++.+++..+..++..+.+ ...|+++|+||+|.....
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCCc
Confidence 67899999999998899888888777764 126899999999976544
No 107
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.60 E-value=3.1e-15 Score=111.69 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
...+|+++|++|+|||||++++++...... . .|.........+ ++..+.+|||||...+...... ..+|+++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-~----~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHI-T----PTQGFNIKSVQS-QGFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEE-E----EETTEEEEEEEE-TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcc-c----CcCCeEEEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 348999999999999999999998753211 1 122223334455 6788999999998765433222 7899999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|++++.+.... ..+..+..... ....|+++|+||+|....
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC
Confidence 99999866555542 23333322111 123679999999996544
No 108
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.60 E-value=4.1e-15 Score=113.69 Aligned_cols=113 Identities=18% Similarity=0.102 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++.+++...........+... ...... ++ ..+.+|||||+..+...... ..+|++
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE---EEEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE---EEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 48999999999999999999997654322222222111 122233 33 47889999999887766554 889999
Q ss_pred EEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+.... .++..+....+ ..|+++|+||+|...
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence 999999865555443 34455544432 367999999999544
No 109
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.60 E-value=1.5e-15 Score=113.04 Aligned_cols=114 Identities=17% Similarity=0.071 Sum_probs=70.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE-eCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL-KDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
..+|+++|++|+|||||++++++...........+..... .... .....+.+|||||...+...... ..+|+++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA---NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC---CCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE---EEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3899999999999999999999765322211111111110 0111 02335679999999887665554 8899999
Q ss_pred EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+.... .++..+..... ..|+++|+||+|...
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD 126 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence 99999865555543 34455554432 367999999999544
No 110
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.3e-15 Score=115.75 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++++++......... ..+.........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA--TIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCC--CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 47999999999999999999997654322221 2222222233444 44 36889999998665432222 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE 145 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 99999986544443 344444544322 2367999999999653
No 111
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.60 E-value=1.4e-15 Score=128.96 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
.+|+++|++|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.++..... ..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEEE-TTEEEEECC--------------------CCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 789999999999999999999865322221 234454444344555 788999999999976543211 17
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.+|++++|+|++++.+..+..++..+. . .|+++|+||+|....
T Consensus 303 ~aD~vl~VvD~s~~~~~~~~~i~~~l~----~---~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGDQEIYEQVK----H---RPLILVMNKIDLVEK 345 (462)
T ss_dssp SCSEEEEEEETTTCSCHHHHHHHHHHT----T---SCEEEEEECTTSSCG
T ss_pred cCCEEEEEeccCCCCCHHHHHHHHhcc----C---CcEEEEEECCCCCcc
Confidence 899999999999888888766665552 2 579999999996644
No 112
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.60 E-value=3.5e-16 Score=118.55 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=76.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCce
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
....+|+++|++|+|||||+|+|++........ .+.+.........+ ++ ..+.+|||||...+...... ..+|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 345899999999999999999999876433222 12222333334444 44 46889999998887765555 8899
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++|+|++++.+.... .++..+.... ....|+++|+||+|...
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTT 152 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC-
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc--cCCCCEEEEEECccCCc
Confidence 99999999865554443 3333332221 12468999999999654
No 113
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.59 E-value=5e-15 Score=112.66 Aligned_cols=116 Identities=19% Similarity=0.116 Sum_probs=77.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCce
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
....+|+++|++|+|||||++++++......... .+.......... ++. .+.+|||||...+...... ..+|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP---TVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 103 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC---CSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC---eecceeEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 3458999999999999999999997654322221 122222222233 443 4569999999877665554 8999
Q ss_pred EEEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++++|+|++++.+..+. .++..+.... ...|+++|+||+|....
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence 99999999966665554 3444454433 23679999999996543
No 114
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.59 E-value=1.3e-14 Score=122.95 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC----c---C---
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS----E---F--- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~---~--- 88 (240)
..+|+|+|++|+|||||+|+|+|......+. ..++|.........+ ++..+.+|||||+....... . .
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~-~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCC-CCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 4799999999999999999999986432222 234454444455566 78889999999985443221 0 0
Q ss_pred ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|++.+.+..+......+.. ...++++|+||+|....
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-----~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMER-----RGRASVVVFNKWDLVVH 307 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTT
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCCc
Confidence 56799999999998888777655544432 13679999999997654
No 115
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.1e-14 Score=109.90 Aligned_cols=115 Identities=22% Similarity=0.167 Sum_probs=74.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
...+|+++|++|+|||||++++++...........+... ...... ++ ..+.+|||||... ...... ..+|+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY---RHQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE---EEEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE---EEEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 458999999999999999999998764332222221111 122333 33 4688999999887 111111 77899
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+... ..++..+...... ...|+++|+||+|...
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDH 146 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECccccc
Confidence 999999986544443 3344455544322 2367999999999654
No 116
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=6.9e-16 Score=116.11 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
...+|+|+|++|+|||||+|++++...........+.+.......... ....+.+|||||...+...... ..+|+++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 347999999999999999999998654332222223233322222211 3457899999997655433222 8899999
Q ss_pred EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+... ..++..+.... ....|+++|+||+|...
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEE 142 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcc
Confidence 9999986544443 33444444432 12468999999999543
No 117
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.59 E-value=6.2e-15 Score=111.40 Aligned_cols=120 Identities=24% Similarity=0.203 Sum_probs=75.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCC-CCcC--CC
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSA-GSEF--DE 90 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~-~~~~--~~ 90 (240)
.....+|+++|++|+|||||++++++........... +.........+ ++. .+.+|||||...+.. .... ..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN--PEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTS--CTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCc--ccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 3456899999999999999999998754322222212 22222223334 443 567899999876532 1111 67
Q ss_pred ceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 91 IHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 91 ~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|++++|+|++++.+... ..++..+..... ....|+++|+||+|....
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARS 145 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhcccc
Confidence 899999999986555443 344444444322 123679999999996543
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.59 E-value=1e-14 Score=109.14 Aligned_cols=135 Identities=15% Similarity=0.222 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------- 88 (240)
..+|+++|++|+|||||+|+|++...+.... .+.|.........+ ++..+.+|||||+..+......
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 3799999999999999999999976443332 34444444455556 7788999999999887533211
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEE
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCV 168 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (240)
..+|++++|+|.++ + .....++..+. . ...|+++|+||+|..... . .......+....+..++
T Consensus 84 ~~~~~~i~v~d~~~-~-~~~~~~~~~~~---~--~~~piilv~nK~Dl~~~~--~--------~~~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 84 EKPDLVVNIVDATA-L-ERNLYLTLQLM---E--MGANLLLALNKMDLAKSL--G--------IEIDVDKLEKILGVKVV 146 (188)
T ss_dssp HCCSEEEEEEEGGG-H-HHHHHHHHHHH---T--TTCCEEEEEECHHHHHHT--T--------CCCCHHHHHHHHTSCEE
T ss_pred cCCCEEEEEecchh-H-HHHHHHHHHHH---h--cCCCEEEEEEhhhccccc--c--------chHHHHHHHHHhCCCeE
Confidence 35899999999873 1 11223333332 2 236799999999943221 0 01234455555566666
Q ss_pred EEeCC
Q 036363 169 LFDNK 173 (240)
Q Consensus 169 ~~~~~ 173 (240)
..+..
T Consensus 147 ~~Sa~ 151 (188)
T 2wjg_A 147 PLSAA 151 (188)
T ss_dssp ECBGG
T ss_pred EEEec
Confidence 66544
No 119
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.58 E-value=4.8e-15 Score=113.45 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC---CcEEEEEeCCCCCCCCC-CCcC--CCce
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD---GQVVNVIDTPGLFDFSA-GSEF--DEIH 92 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~-~~~~--~~~~ 92 (240)
..+|+++|++|+|||||++++++........ +.........+ + +..+.+|||||+..+.. .... ..+|
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-----SITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-----CCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccC-----CcceeeEEEEe-cCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 4899999999999999999999876432221 11122233444 4 56799999999986653 2222 7899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHh----CCCcCCeEEEEEeCCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEEATLHSLQTLF----GKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~i~v~~~~D~~~~ 139 (240)
++++|+|+++ ...........+...+ ......|+++|+||+|....
T Consensus 81 ~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 81 AVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp EEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred EEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 9999999984 2222222333332221 12234689999999996654
No 120
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.58 E-value=5.6e-15 Score=112.28 Aligned_cols=117 Identities=20% Similarity=0.119 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC--CCccccCCCCCcceeEEEEEEEEeC----CcEEEEEeCCCCCCCCCCCcC--CC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMHRTVLKD----GQVVNVIDTPGLFDFSAGSEF--DE 90 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~--~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~l~DtpG~~~~~~~~~~--~~ 90 (240)
..+|+++|++|+|||||+++|++. ........ ............+ + ...+.+|||||+..+...... ..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAM--TSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEC------------------------------------CEEEEC-TTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCC--ccceEEEEEEEEE-CCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 379999999999999999999987 33211111 1111222233344 4 347899999998755433222 78
Q ss_pred ceEEEEEEECCCCCCHHH-HHHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363 91 IHAALVVFSVRSRFSQEE-EATLHSLQTLFGK-NCFDYMIVVFSGRDELE 138 (240)
Q Consensus 91 ~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~ 138 (240)
+|++++|+|++++.+... ..++..+....+. ....|+++|+||+|...
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 999999999986555443 3445555544320 12468999999999654
No 121
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.58 E-value=4.1e-14 Score=115.35 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+|+|++|+|||||++.|++...... . .|.......... .+..+.+|||||...+...... ..+|++++
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~----pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEE-E----EETTEEEEEEEE-TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCc-c----cccceEEEEEec-CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 36999999999999999999998764322 1 244445555556 7789999999998877665444 88999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+|+++..+.... ..+..+..... ....|+++|+||+|....
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred EEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc
Confidence 9999876666542 23333322111 124689999999996543
No 122
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.58 E-value=1.8e-15 Score=128.67 Aligned_cols=112 Identities=22% Similarity=0.181 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
.+|+|+|.+|+|||||+|+|+|...... ....+.|....+....+ .+..+.+|||||+......... .
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 6999999999999999999998754322 22356666666666666 6788999999998743222111 7
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+|++++|+|+..+++..+...++.+.. ...|+++|+||+|...
T Consensus 102 ~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred hCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence 8999999999988888888777766642 3467999999999653
No 123
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=114.70 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=74.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|+|||||++++++......... ..+.........+ ++ ..+.+|||||...+...... ..+|++
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGS--TIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCC--CcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 47999999999999999999997664222111 1112222233344 44 47889999998765433222 889999
Q ss_pred EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSE 148 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCcccc
Confidence 99999986544433 344455544432 2368999999999654
No 124
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.58 E-value=6.5e-14 Score=106.73 Aligned_cols=117 Identities=16% Similarity=0.245 Sum_probs=71.7
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---- 87 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---- 87 (240)
|++.++ .+|+++|++|+|||||+|+|+|...........+.+..... ..+ .+ .+.+|||||+........
T Consensus 21 ~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~ 94 (210)
T 1pui_A 21 LPSDTG--IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRK 94 (210)
T ss_dssp SSCSCS--EEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHH
T ss_pred CCCCCC--cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHH
Confidence 777888 99999999999999999999997621111122233333222 222 23 577999999865321110
Q ss_pred ------C-----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 88 ------F-----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 88 ------~-----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
. ...+++++++++..+.+..+.....++. .. ..|+++|.||+|.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~----~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 95 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV-DS----NIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-HT----TCCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH-Hc----CCCeEEEEecccCCCc
Confidence 0 5789999999998777765544444443 22 2468889999996643
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.58 E-value=9.2e-15 Score=115.92 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=73.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------- 88 (240)
..+|+++|++|+|||||+|+|+|...+.+.. .+.|.......+. .+..+.+|||||+..+......
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--pg~tv~~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVERKSGLVK--KNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS--SCCCCSCEEEECT--TCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCCcEEEEEEEEe--cCCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3799999999999999999999976443332 3455543333221 1567899999999987643211
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+|++++|+|+++. .....++..+.+ ...|+++|+||+|..
T Consensus 79 ~~~d~vi~V~D~t~~--e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 79 QRADSILNVVDATNL--ERNLYLTTQLIE-----TGIPVTIALNMIDVL 120 (272)
T ss_dssp TCCSEEEEEEEGGGH--HHHHHHHHHHHH-----TCSCEEEEEECHHHH
T ss_pred CCCCEEEEEecCCch--HhHHHHHHHHHh-----cCCCEEEEEEChhhC
Confidence 379999999999842 122233333332 236799999999954
No 126
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.58 E-value=8.7e-15 Score=109.79 Aligned_cols=117 Identities=23% Similarity=0.180 Sum_probs=73.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC-CCceEE
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF-DEIHAA 94 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~-~~~~~~ 94 (240)
...+|+++|++|+|||||++++++...........+... ...... ++ ..+.+|||||...+...... ..+|++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY---SSEETV-DHQPVHLRVMDTADLDTPRNCERYLNWAHAF 95 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEE-TTEEEEEEEEECCC---CCCTHHHHTTCSEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee---eEEEEE-CCEEEEEEEEECCCCCcchhHHHHHhhCCEE
Confidence 448999999999999999999998764322222111111 112223 33 36789999999877653222 789999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGK-NCFDYMIVVFSGRDELE 138 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~ 138 (240)
++|++++++.+.... .++..+...... ....|+++|+||+|...
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 999999865555442 344445443210 12367999999999543
No 127
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.4e-15 Score=110.83 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=71.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCc
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEI 91 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~ 91 (240)
...+|+++|++|+|||||+|+|++........ ....+.. ..+ ....+.+|||||+..+...... ..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSA-----ADY-DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCcee-----eee-cCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 34799999999999999999999876422110 0111111 111 4567889999999877554433 348
Q ss_pred eEEEEEEECC-CCCCHHH-HHHHHHHHHHhC--CCcCCeEEEEEeCCCCCCCC
Q 036363 92 HAALVVFSVR-SRFSQEE-EATLHSLQTLFG--KNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 92 ~~~l~v~~~~-~~~~~~~-~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~~~~ 140 (240)
|++++|+|++ +..+... ..++..+..... .....|+++|+||+|.....
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 9999999997 3322222 223333332211 11236799999999976543
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.58 E-value=5.8e-15 Score=123.66 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc-EEEEEeCCCCCCCCCCCcC-----
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ-VVNVIDTPGLFDFSAGSEF----- 88 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~----- 88 (240)
+.+...+|+++|+.|+|||||+|+|++....... ...+.|.........+ .+. .+.+|||||+.++......
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEE-TTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEE-CCCCeEEEEECcCCCcccchhHHHHHHH
Confidence 3445689999999999999999999987653222 2245555555566666 444 8999999999988654332
Q ss_pred ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
..+|++++|+|+ .....+..++..+.+. ..|+++|+||+|.....
T Consensus 108 ~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 108 RRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence 789999999998 5566667777777653 36799999999976554
No 129
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.58 E-value=4.4e-15 Score=113.91 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=84.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC-----------CcEEEEEeCCCCCCCCCCCc
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD-----------GQVVNVIDTPGLFDFSAGSE 87 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~l~DtpG~~~~~~~~~ 87 (240)
..+|+|+|++|+|||||+|+|++......... ..+.........+.. ...+.+|||||...+.....
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFIT--TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEE--EEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCC--ceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 47999999999999999999998754222111 111111112222211 35789999999765433222
Q ss_pred C--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHh
Q 036363 88 F--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLF 163 (240)
Q Consensus 88 ~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (240)
. ..+|++++|+|+++..+..... .++....... ...|+++|+||+|........ ......+....
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~---------~~~~~~~~~~~ 171 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQREVN---------ERQARELADKY 171 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC---------HHHHHHHHHHT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCCEEEEEECCccccccccC---------HHHHHHHHHHC
Confidence 2 8899999999998544333221 2222221111 347899999999964322111 11234445555
Q ss_pred CCcEEEEeCCCc
Q 036363 164 DNRCVLFDNKTK 175 (240)
Q Consensus 164 ~~~~~~~~~~~~ 175 (240)
+..++..+....
T Consensus 172 ~~~~~~~Sa~~g 183 (217)
T 2f7s_A 172 GIPYFETSAATG 183 (217)
T ss_dssp TCCEEEEBTTTT
T ss_pred CCcEEEEECCCC
Confidence 667777776543
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.58 E-value=1.9e-15 Score=127.94 Aligned_cols=112 Identities=22% Similarity=0.183 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~ 89 (240)
.+|+++|.+|+|||||+|+|+|...... ....+.|....+....+ .+..+.+|||||+......... .
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998754322 22356666666666666 6788999999999743221110 7
Q ss_pred CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+|++++|+|+.++.+..+..+...+. ....|+++|+||+|...
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~-----~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILY-----RTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHT-----TCCSCEEEEEECCCC--
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHH-----HcCCCEEEEEECccCcc
Confidence 899999999999888888766555443 23468999999999653
No 131
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=119.88 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=68.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCC----
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAG---- 85 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~---- 85 (240)
+-..+|+|+|+||+|||||+|+|+|...+..+... ...+........... .+ ..+.+|||||+......
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 33367899999999999999999998753332110 011211111111110 11 26789999999865210
Q ss_pred -----------------------C--cCCCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 86 -----------------------S--EFDEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 86 -----------------------~--~~~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
. ..+.+|+++|+++++ ..++..+..+++.+. . ..++|+|+||+|.+.+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~--~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E--KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T--TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----c--cCcEEEEEEcccCccH
Confidence 0 015567788888886 578888876766653 2 3679999999997754
No 132
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.57 E-value=1.3e-14 Score=122.65 Aligned_cols=117 Identities=14% Similarity=0.186 Sum_probs=81.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCc--cc------------cC-----------------CCCCcceeEEEEEEEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAF--KS------------RA-----------------SSSGVTSTCEMHRTVL 65 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~------------~~-----------------~~~~~t~~~~~~~~~~ 65 (240)
....+|+++|+.++|||||+++|++.... .. +. ...+.|....+....+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 34589999999999999999999864310 00 00 0024455555555555
Q ss_pred eCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 66 KDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+..+.+|||||+.++...... ..+|++++|+|++++...+....+..+.. ++ .+++++|+||+|...
T Consensus 102 -~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~---~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LG---IKHIVVAINKMDLNG 171 (434)
T ss_dssp -SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCEEEEEEECTTTTT
T ss_pred -CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEEcCcCCc
Confidence 6778999999998876433222 88999999999998887777766655542 22 357999999999665
No 133
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.57 E-value=2.8e-15 Score=129.07 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=85.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc----------------cc----CCCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMHRTVLKDGQVVNVIDTP 77 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (240)
..++|+|+|++|+|||||+|+|++..... .. ....+.|.......+.+ .+..+++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 45899999999999999999997221110 00 00123444444455666 78899999999
Q ss_pred CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+.++...... ..+|++++|+|++.+.+......+..+... ..|+++|+||+|....
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc
Confidence 99887654433 889999999999988888888888766532 2579999999997544
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.57 E-value=5.7e-15 Score=125.73 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC-CCCCCCcC----------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF-DFSAGSEF---------- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~---------- 88 (240)
.+|+|+|.+|+|||||+|+|++........ ..++|.......+.+ ++..+.+|||||+. .+......
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCC-CCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 799999999999999999999875322222 234555555555666 78899999999998 65432221
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+|++++|+|++++.+..+...++.+ . ..|+++|+||+|...
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE 364 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred hcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence 789999999999988887776655433 2 257999999999643
No 135
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.57 E-value=5.6e-15 Score=111.30 Aligned_cols=121 Identities=10% Similarity=0.063 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC------CCcceeEEEEEE---EE-eCCcEEEEEeCCCCCCCCCCCc
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS------SGVTSTCEMHRT---VL-KDGQVVNVIDTPGLFDFSAGSE 87 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~------~~~t~~~~~~~~---~~-~~~~~~~l~DtpG~~~~~~~~~ 87 (240)
...+|+++|++|+|||||++.+.+.......... ...|....+... .. .....+.+|||||...+.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 3489999999999999999988876432211100 111222221111 11 0123688999999887655444
Q ss_pred C--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhC----CCcCCeEEEEEeCCCCCC
Q 036363 88 F--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG----KNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 88 ~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~i~v~~~~D~~~ 138 (240)
. ..+|++++|+|++++.+..+...+..+...+. .....|+++|+||+|...
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 3 88999999999985555555555544443321 223468999999999544
No 136
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.57 E-value=1.6e-14 Score=108.10 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=74.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcCCCceE
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEFDEIHA 93 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~ 93 (240)
+....+|+++|++|+|||||++.+++......... |.........+ ++. .+.+|||||...+. ....+|+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~---~~~~~~~ 88 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP----EGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ---FAAWVDA 88 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT----TCEEEEEEEEE-TTEEEEEEEEECSSSCCHH---HHHHCSE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC----CcceEEEEEEE-CCEEEEEEEEECCCChhhh---eecCCCE
Confidence 34558999999999999999999988764322211 11111133344 553 56789999987654 2266899
Q ss_pred EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+++|+|++++.+... ..++..+.... .....|+++|+||+|..
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccc
Confidence 999999996655555 34444443321 11346799999999964
No 137
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.56 E-value=3.2e-14 Score=126.43 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcc-e----------eEE----------------------------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVT-S----------TCE---------------------------- 59 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t-~----------~~~---------------------------- 59 (240)
..+|+|+|.+|+|||||+|+|+|....+.+..+.... . +..
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 3899999999999999999999987544433221100 0 000
Q ss_pred -------------EEEEEEeCC---cEEEEEeCCCCCCCCCCCcC-----CCceEEEEEEECCCCCCHHHHHHHHHHHHH
Q 036363 60 -------------MHRTVLKDG---QVVNVIDTPGLFDFSAGSEF-----DEIHAALVVFSVRSRFSQEEEATLHSLQTL 118 (240)
Q Consensus 60 -------------~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~ 118 (240)
...+.++.. ..+.+|||||+.+....... ..+|++++|++++.+.+..+...+....
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-- 226 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-- 226 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT--
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH--
Confidence 000111000 36899999998764322111 7799999999999888888776664322
Q ss_pred hCCCcCCeEEEEEeCCCCCC
Q 036363 119 FGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 119 ~~~~~~~~~i~v~~~~D~~~ 138 (240)
.. ...|+++|+||+|...
T Consensus 227 -~~-~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 227 -KG-RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp -TT-SCCCEEEEEECGGGGG
T ss_pred -Hh-hCCCEEEEEECccccc
Confidence 11 2356999999999654
No 138
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.56 E-value=1.4e-14 Score=107.51 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcCCCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEFDEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~l~ 96 (240)
..+|+++|++|+|||||++++++..... ...+.+.. ....... ++ ..+.+|||||.... .....+|++++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~---~~~~~~~-~~~~~~l~i~Dt~G~~~~---~~~~~~d~~il 78 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ---YKKEMLV-DGQTHLVLIREEAGAPDA---KFSGWADAVIF 78 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE---EEEEEEE-TTEEEEEEEEECSSSCCH---HHHHHCSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee---EEEEEEE-CCEEEEEEEEECCCCchh---HHHHhCCEEEE
Confidence 4899999999999999999999876432 22222211 1222333 44 35789999998651 11177899999
Q ss_pred EEECCCCCCHHHHH-HHHHHHHHhCC-CcCCeEEEEEeCCCCC
Q 036363 97 VFSVRSRFSQEEEA-TLHSLQTLFGK-NCFDYMIVVFSGRDEL 137 (240)
Q Consensus 97 v~~~~~~~~~~~~~-~l~~l~~~~~~-~~~~~~i~v~~~~D~~ 137 (240)
|+|++++.+..... ++.++...... ....|+++|+||+|..
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99998666555543 33344444321 1246899999999963
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.56 E-value=1e-13 Score=114.31 Aligned_cols=114 Identities=20% Similarity=0.161 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------- 88 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------- 88 (240)
..+|+++|++|+|||||+|.|++........ .+.|.......... .+..+.+|||||+.+.......
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECC--TTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 4799999999999999999999986432222 23444444444545 6778999999999775432211
Q ss_pred -CCceEEEEEEECCCCC--CHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 89 -DEIHAALVVFSVRSRF--SQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 89 -~~~~~~l~v~~~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+|++++|+|+++.. +..+ ..++..+...++ ..|+++|+||+|...
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVAD 294 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCC
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCC
Confidence 4689999999987543 5554 466666666553 367999999999554
No 140
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.56 E-value=1.5e-14 Score=123.83 Aligned_cols=117 Identities=16% Similarity=0.264 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeEEEEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (240)
+..+|+++|++|+|||||+++|++..... ......+.|.......+.+ .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 34899999999999999999997641100 0011235566666666666 77
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+.+|||||+.++...... ..+|++++|+|++++ ........+..+. .++ .+++++|+||+|....
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~-~~~---~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLG---IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH-HTT---CCCEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH-HcC---CCcEEEEEECcCcccc
Confidence 89999999999776433322 889999999999865 3344444444333 222 2569999999996653
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.55 E-value=2.1e-14 Score=121.38 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=82.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeEEEEEEEEeC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMHRTVLKD 67 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 67 (240)
....+|+++|+.++|||||+++|++....... ....+.|....+..+.+ .
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-E 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-C
Confidence 34589999999999999999999654221100 01135677777666766 7
Q ss_pred CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCC-------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFS-------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+..+.+|||||+.++...... ..+|++++|+|++.+.. .+....+..+.. ++ .+++++++||+|...
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~---v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AG---VKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cC---CCeEEEEeecCCCcc
Confidence 789999999999887543333 78999999999986543 344444444432 22 356999999999643
No 142
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=118.87 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=64.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CCcceeEEEEEEEEe-CCc--EEEEEeCCCCCCCC-----
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMHRTVLK-DGQ--VVNVIDTPGLFDFS----- 83 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~~--~~~l~DtpG~~~~~----- 83 (240)
+...+|+|+|++|+|||||+|+|++...+..+... ...|........... .+. .+.+|||||+.+..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 34478999999999999999999887655443211 112332222222111 232 68899999995442
Q ss_pred --CCCc-------C---------------CCceEEEEEEEC-CCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 84 --AGSE-------F---------------DEIHAALVVFSV-RSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 84 --~~~~-------~---------------~~~~~~l~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.... . ..+|+++|+++. ...+...+..+++.+ . ...|+++|+||+|.+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCC
Confidence 2221 0 345789998876 356776666555544 2 2367999999999765
Q ss_pred C
Q 036363 139 A 139 (240)
Q Consensus 139 ~ 139 (240)
.
T Consensus 189 ~ 189 (361)
T 2qag_A 189 L 189 (361)
T ss_dssp H
T ss_pred H
Confidence 4
No 143
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2e-14 Score=125.86 Aligned_cols=117 Identities=15% Similarity=0.238 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccC-----------------------------CCCCcceeEEEEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRA-----------------------------SSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~ 68 (240)
+..+|+++|++|+|||||+|+|++........ ...|.|.......+.+ .+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~ 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CC
Confidence 45899999999999999999999763311100 0135566665566666 77
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+.+|||||+.++...... ..+|++|+|+|++.+ ...+....+..+. ....+++++|+||+|....
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~----~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS----SLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH----TTTCCEEEEEEECTTTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH----HcCCCeEEEEEecccccch
Confidence 89999999999776433322 889999999999842 2233333333332 2223679999999997653
No 144
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.54 E-value=4.5e-13 Score=110.30 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcc------------------------e-----------------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRAS--SSGVT------------------------S----------------- 56 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--~~~~t------------------------~----------------- 56 (240)
.+|+++|.+|+|||||+|+|+|....+.+.. ....+ .
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 6999999999999999999999865322211 00001 0
Q ss_pred ------eEEEEEEEEeCCcEEEEEeCCCCCCCCCC---Cc---C----------CCceEEEEEEECCCCCCHHHH-HHHH
Q 036363 57 ------TCEMHRTVLKDGQVVNVIDTPGLFDFSAG---SE---F----------DEIHAALVVFSVRSRFSQEEE-ATLH 113 (240)
Q Consensus 57 ------~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~~---~----------~~~~~~l~v~~~~~~~~~~~~-~~l~ 113 (240)
.........+....+.+|||||+...... .. . ...+++++|++++..+...+. ..++
T Consensus 112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~ 191 (353)
T 2x2e_A 112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAK 191 (353)
T ss_dssp TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHH
T ss_pred CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHH
Confidence 00001111112467999999999764321 11 0 445667777787755544433 2333
Q ss_pred HHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 114 SLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 114 ~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.+ .. ...++++|+||+|.+..
T Consensus 192 ~~----~~-~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 192 EV----DP-QGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HH----CT-TCTTEEEEEECGGGSCT
T ss_pred Hh----Cc-CCCceEEEeccccccCc
Confidence 32 22 23679999999997654
No 145
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.54 E-value=1.4e-14 Score=125.25 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=89.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--------------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTP 77 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (240)
..++|+|+|+.++|||||..+|+-..... ......+.|......++.| ++..++|+|||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 45899999999999999999986221110 0011235666666677788 99999999999
Q ss_pred CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+.||...... +.+|++++|+|+..+...+....|+.+.+. ..|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchhc
Confidence 99999877666 999999999999999999999999888643 2568999999997655
No 146
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.53 E-value=3.6e-14 Score=122.28 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc--c------------------CCCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--R------------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTP 77 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (240)
...+|+++|++|+|||||+++|++...... + ....+.|.......+.+ .+..+++||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 348999999999999999999986321110 0 00123333333344556 78899999999
Q ss_pred CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|+.++...... ..+|++++|+|++++........+..+. . ...|+++++||+|....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~----~-~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR----L-RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT----T-TTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH----H-cCCCEEEEEcCcCCccc
Confidence 99887643322 8899999999999777776666655543 2 23568999999996654
No 147
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.53 E-value=4.5e-14 Score=106.87 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=74.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+++|++|||||||+++|+|...........+ .......+.+ ++. .+.+|||||...+...... ..++++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--CEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 37999999999999999999998764332222222 2222333444 554 5678999998776544333 788999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++|+++++..+..+. .++..+... .....++++|+||+|..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccc
Confidence 999999855544432 333334332 12236799999999954
No 148
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.52 E-value=1.2e-14 Score=108.70 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CccccCCCCCcceeEEEEEEEE----eCCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMHRTVL----KDGQVVNVIDTPGLFDFSAGSEF--DEIH 92 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~~~~~~~~~~--~~~~ 92 (240)
.+|+++|++|+|||||++++++.. .+.... ............... .....+.+|||||...+...... .+.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~-~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ-SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCc-ceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 689999999999999999999863 222211 111111111111111 02457889999998765544333 6788
Q ss_pred EEEEEEECCCCC-CHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 93 AALVVFSVRSRF-SQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 93 ~~l~v~~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++++|+|++++. +... ..++..+..... ..|+++|.||+|..
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVS 125 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence 999999998543 2222 234444433321 36899999999954
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.52 E-value=1.3e-15 Score=130.76 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|++|+|||||+++|++...... ...+.|.....+...+..+..+.+|||||+.++...... ..+|++++|
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 7899999999999999999987654322 223444444333333324567899999999988877665 889999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++++..++....+..+.. ...|+++++||+|...
T Consensus 83 VDa~dg~~~qt~e~l~~~~~-----~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 83 VAADDGVMKQTVESIQHAKD-----AHVPIVLAINKCDKAE 118 (537)
T ss_dssp CBSSSCCCHHHHHHHHHHHT-----TTCCEEECCBSGGGTT
T ss_pred EECCCCccHHHHHHHHHHHH-----cCCcEEEEEecccccc
Confidence 99998888888877776653 1246999999999654
No 150
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.52 E-value=8e-14 Score=114.86 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD 89 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~ 89 (240)
..|+|+|++|+|||||+|+|+|.....+.. .+.|.......+.+ ++..+.+|||||+........ ..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~--~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTK--LFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK 256 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCC--cccccCCEEEEEEE-CCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence 459999999999999999999986532222 23444444445556 778899999999855322110 17
Q ss_pred CceEEEEEEECCCCC--CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 90 EIHAALVVFSVRSRF--SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 90 ~~~~~l~v~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.+|++++|+|+++.. .......+..+...++.. ..|+++|.||+|.+..
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~-~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVS-GKPILVTLNKIDKING 307 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC-SCCEEEEEECGGGCCS
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC-CCCEEEEEECCCCCCc
Confidence 789999999998553 222333334444444422 2579999999997644
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=1.5e-14 Score=123.63 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcc-----ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCc
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEI 91 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~ 91 (240)
..+|+++|+.++|||||+++|++..... ......+.|....+....+ ++..+.+|||||+.++...... ..+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 4899999999999999999999875110 1112234565555555666 7789999999998765322222 889
Q ss_pred eEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 92 HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 92 ~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|++++|+|++++...+..+.+..+.. ++ .|.++++||+|...
T Consensus 98 D~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAG 139 (482)
T ss_dssp CEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSC
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCccc
Confidence 99999999998787877777765543 22 34699999999664
No 152
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.51 E-value=5.5e-14 Score=111.32 Aligned_cols=139 Identities=18% Similarity=0.186 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Ccce---eEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS-----GVTS---TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--- 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~-----~~t~---~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--- 88 (240)
.+++|+|+||+|||||+|+|+|...+.++.... ..+. ...+......-...++++|+||+.........
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 789999999999999999999977655543211 1111 11111111001226789999999764332211
Q ss_pred ---------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 89 ---------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 89 ---------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
..+++.+++++.. .+++..+...++.+.. . .++++|++|+|.+...
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~----~--~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK----V--VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT----T--SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh----c--CcEEEEEeccccCCHH
Confidence 3468888888865 7899999888887753 2 5799999999988653
Q ss_pred cccHHHHhcccCCchHHHHHHHhCCcEEEEe
Q 036363 141 DETLEDYLGRECPKPLKEILHLFDNRCVLFD 171 (240)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (240)
.+..+... ++..+...+..++.|.
T Consensus 157 --e~~~~k~~-----i~~~l~~~~i~i~~~~ 180 (270)
T 3sop_A 157 --EKSEFKQR-----VRKELEVNGIEFYPQK 180 (270)
T ss_dssp --HHHHHHHH-----HHHHHHHTTCCCSSCS
T ss_pred --HHHHHHHH-----HHHHHHHcCccccCCC
Confidence 44444433 5555666666655443
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.51 E-value=2.1e-14 Score=120.38 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-------Ccccc--------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRR-------AFKSR--------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~-------~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
...+|+++|+.|+|||||+++|++.. .+... ....+.|.......+.+ .+..+.+|||||+.++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH
Confidence 44899999999999999999998731 00000 00134455444444544 6788999999999876
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...... ..+|++++|+|++++...+....+..+.. .+ .+++++++||+|...
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~-~~---ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH-TT---CCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCEEEEEEECccccC
Confidence 432222 78999999999998887777777766543 22 244889999999654
No 154
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.51 E-value=1.3e-13 Score=118.67 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=81.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV 96 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~ 96 (240)
..+|+|+|.+|+|||||+|+|++.... .. ..|....+..+.+ .+..+.+|||||...+...... ..+|++|+
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~----~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSV-TT----IPTVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-CC----CCCSSEEEEEEES-SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----CCccceeEEEEEe-CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 489999999999999999999987632 21 2244555555666 7789999999998877665444 88999999
Q ss_pred EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
|+|++++.+.... ..+..+..... ....|+++|+||+|...
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPD 437 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSS
T ss_pred EEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCc
Confidence 9999976555542 33333332111 12368999999999654
No 155
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.51 E-value=2.4e-14 Score=127.25 Aligned_cols=117 Identities=27% Similarity=0.349 Sum_probs=83.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC---CCCccc----c-C--------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILG---RRAFKS----R-A--------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~----~-~--------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (240)
....+|+|+|++|+|||||+|+|++ ...... + . ...+.|.........+ .+..+++|||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 4568999999999999999999984 211000 0 0 0123444444455666 78899999999998
Q ss_pred CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++...... ..+|++++|+|++++.+..+...+..+... ..|+++|+||+|....
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCcccc
Confidence 87554333 789999999999988888888888776542 2578999999997654
No 156
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.50 E-value=5.6e-15 Score=125.85 Aligned_cols=111 Identities=15% Similarity=0.236 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|+.++|||||+++|++....... ..+.|.....+...+ ++..+.+|||||+.+|...... ..+|++++|
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 79999999999999999999875432211 133444333334444 6678899999999998776655 889999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++++...+....+..+.. . ..|+++++||+|...
T Consensus 82 Vda~~g~~~qT~e~l~~~~~-~----~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 82 VAADDGVMPQTIEAIQHAKA-A----QVPVVVAVNKIDKPE 117 (501)
T ss_dssp EETTTBSCTTTHHHHHHHHH-T----TCCEEEEEECSSSST
T ss_pred eecccCccHHHHHHHHHHHh-c----CceEEEEEEeccccc
Confidence 99987666666666655542 1 246999999999754
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.50 E-value=2.5e-14 Score=120.96 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=73.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-Ccccc----------------------------CCCCCcceeEEEEEEEEeCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRR-AFKSR----------------------------ASSSGVTSTCEMHRTVLKDG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~~ 68 (240)
+..+|+++|+.|+|||||+++|++.. .+... ....+.|.......+.+ .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 34899999999999999999998641 11100 01234566555555666 77
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+.+|||||+.++...... ..+|++++|+|++++ +..+....+..+. .++ .+++++++||+|...
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~-~~~---~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMG---LDQLIVAVNKMDLTE 158 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTT---CTTCEEEEECGGGSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHH-HcC---CCeEEEEEEcccCCC
Confidence 89999999999887543222 889999999999864 2223334333332 222 256899999999665
No 158
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.50 E-value=9.2e-13 Score=105.85 Aligned_cols=116 Identities=14% Similarity=0.171 Sum_probs=70.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--C--CC----------------------ccee---------------
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRAS--S--SG----------------------VTST--------------- 57 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--~--~~----------------------~t~~--------------- 57 (240)
..+|+++|.+|+|||||+|+|+|....+.+.. . .+ .|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999999875322110 0 00 0000
Q ss_pred --------EEEEEEEEeCCcEEEEEeCCCCCCCCC----CC---cC--------CCceEEE-EEEECCCCCCHHHH-HHH
Q 036363 58 --------CEMHRTVLKDGQVVNVIDTPGLFDFSA----GS---EF--------DEIHAAL-VVFSVRSRFSQEEE-ATL 112 (240)
Q Consensus 58 --------~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~---~~--------~~~~~~l-~v~~~~~~~~~~~~-~~l 112 (240)
........+....+.+|||||+..... .. .. ...+.++ +|++++.+++..+. .++
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~ 185 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence 000111111246889999999986431 11 00 4555554 78999866665543 233
Q ss_pred HHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 113 HSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 113 ~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+ .. ...|+++|+||+|....
T Consensus 186 ~~~----~~-~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 186 KEV----DP-QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHH----CT-TCSSEEEEEECGGGSCT
T ss_pred HHh----CC-CCCeEEEEEEccccCCC
Confidence 333 22 23679999999997654
No 159
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.50 E-value=9.4e-14 Score=104.62 Aligned_cols=116 Identities=22% Similarity=0.176 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCC-CCCCcC--CCce
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDF-SAGSEF--DEIH 92 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~-~~~~~~--~~~~ 92 (240)
..+|+++|.+|+|||||+|++++... +.....+.+.+. ......+ ++. .+.+|||+|.... ...... ...|
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT--YERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTE--EEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeE--EEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 47999999999999999999996322 222211122222 1223344 544 4578999997652 222222 6789
Q ss_pred EEEEEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 93 AALVVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 93 ~~l~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
++++|++++++.+..... ++..+...... ...|+++|.||+|...
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR 128 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhc
Confidence 999999998666655433 33444443221 2367999999999543
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.50 E-value=3e-14 Score=119.10 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=80.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC------ccc--------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRA------FKS--------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
..+|+++|+.++|||||+++|++... +.. .....+.|.......+.. .+..+.+|||||+.++..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHADYVK 81 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHHHHH
Confidence 47999999999999999999987411 000 001234455554444444 668899999999987633
Q ss_pred CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.... ..+|++++|+|++++...+....+..+.. .+ .+++++++||+|...
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~---vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG---VEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC---CCeEEEEEECcccCC
Confidence 2211 78999999999998888887777755543 22 244789999999654
No 161
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.50 E-value=2.9e-14 Score=126.70 Aligned_cols=119 Identities=24% Similarity=0.301 Sum_probs=82.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhC---CCCccc----cC---------CCCCcceeEEEEEEEEeCCcEEEEEeCCC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILG---RRAFKS----RA---------SSSGVTSTCEMHRTVLKDGQVVNVIDTPG 78 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~----~~---------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (240)
+.....+|+|+|+.|+|||||+++|+. ...... +. ...+.|.........+ .+..+++|||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG 86 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPG 86 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcC
Confidence 334568999999999999999999983 210000 00 0124455455555666 788999999999
Q ss_pred CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+.++...... ..+|++++|+|++++.+......|..+... ..|+++|+||+|....
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA 144 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccC
Confidence 9886544333 789999999999988888888887776542 2568999999997654
No 162
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.24 E-value=2.1e-15 Score=114.67 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=75.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHA 93 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~ 93 (240)
....+|+++|++|+|||||++++++...........+... ....... ....+.+|||||...+...... ..+|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 3458999999999999999999997654322211111111 1111220 2335669999999877655544 78999
Q ss_pred EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++|+|++++.+..+. .++..+....+ ..|+++|+||+|...
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 9999999866555543 34444443322 367999999999654
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.49 E-value=1.5e-13 Score=103.41 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcE--EEEEeCCCCCCCCCCCcC--CCceEE
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQV--VNVIDTPGLFDFSAGSEF--DEIHAA 94 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~--~~~~~~ 94 (240)
..+|+|+|++|||||||+++|+|.......... .+.......+.+ ++.. +.+|||||...+...... ..++++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t--~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST--IGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCC--CSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--cceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 379999999999999999999987654332222 222223334444 5544 457999998876554443 678899
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++|+|..+..+.... .++..+... .....++++++||+|..
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccc
Confidence 999998754443332 233333332 12236799999999953
No 164
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.49 E-value=1.6e-13 Score=115.10 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEe--------------C--------CcEEEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLK--------------D--------GQVVNV 73 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l 73 (240)
....+|+++|+.++|||||+++|+|..... ......+.|....+....+. . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 345899999999999999999999764211 11112344554443322210 0 157899
Q ss_pred EeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 74 IDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 74 ~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|||||+.++...... ..+|++++|+|++++. ..+..+.+..+. .++ .+|+++++||+|....
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~---~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE-ILG---IDKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTT---CCCEEEEEECTTSSCT
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcC---CCeEEEEEEccCCCCH
Confidence 999998765432221 6789999999999765 566666665443 333 2579999999997654
No 165
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=8.4e-14 Score=106.79 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=73.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--C----Cc
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--D----EI 91 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~----~~ 91 (240)
...+|+++|++|+|||||+++|++........ ....+... .+ ....+.+|||||+..+...... . .+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEET-----TG-GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEE-----Ee-eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 45899999999999999999999876422111 11111111 11 3457889999999776433222 2 38
Q ss_pred eEEEEEEECC-CCCCHHH-HHHHHHHHHHhC--CCcCCeEEEEEeCCCCCCCC
Q 036363 92 HAALVVFSVR-SRFSQEE-EATLHSLQTLFG--KNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 92 ~~~l~v~~~~-~~~~~~~-~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~~~~ 140 (240)
|++++|+|++ +..+... ...+..+..... .....|+++|+||+|.....
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 9999999998 4444332 334444433211 11236799999999976543
No 166
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-13 Score=113.73 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=86.9
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (240)
+..|.+......+|+|||.+++|||||+|+|+|.....+. ..++|..+......+ .+..+.++||||+.........
T Consensus 62 ~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~--~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~ 138 (376)
T 4a9a_A 62 GIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAE--YEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRG 138 (376)
T ss_dssp SBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGG--TCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----C
T ss_pred CCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccC--CCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhH
Confidence 3456666666689999999999999999999997643332 256777777777777 8899999999999865443322
Q ss_pred ---------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCC-cCCeEEEEEeCCCCC
Q 036363 89 ---------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKN-CFDYMIVVFSGRDEL 137 (240)
Q Consensus 89 ---------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~i~v~~~~D~~ 137 (240)
+.+|++++|+|++++. .+...+..-...++.. ..+|.++++||.|.-
T Consensus 139 ~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 139 RGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 7899999999998533 3334444333444321 235678899999953
No 167
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=5.9e-14 Score=107.28 Aligned_cols=117 Identities=22% Similarity=0.187 Sum_probs=71.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCC-CCCCc--CCCc
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDF-SAGSE--FDEI 91 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~-~~~~~--~~~~ 91 (240)
...+|+|+|.+|+|||||+|++++... +.....+.+.+. ......+ ++. .+.+|||+|.... ..... ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~--~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT--YERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE--EEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceee--EEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 347999999999999999999997532 222222222222 1223334 444 4578999997652 11111 1678
Q ss_pred eEEEEEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 92 HAALVVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 92 ~~~l~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++++|++++++.+..... ++..+.... .....|+++|+||+|...
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhc
Confidence 9999999998665555433 333333211 112367999999999543
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.47 E-value=1.1e-13 Score=120.55 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-----------------CCcEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----------------DGQVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~ 82 (240)
.+|+++|++|+|||||+++|++...... ...+.|.........+. ....+++|||||+.+|
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 7999999999999999999987543211 11122222211222110 1125899999999999
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
...... ..+|++++|+|++++...+....+..+.. ...|+++++||+|...
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM-----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGST
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-----cCCeEEEEeccccccc
Confidence 776655 78999999999998888888888776653 1257999999999753
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.47 E-value=1.6e-14 Score=122.78 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC-Cccc-------------cC---------------CCCCcceeEEEEEEEEeCCc
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRR-AFKS-------------RA---------------SSSGVTSTCEMHRTVLKDGQ 69 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~-~~~~-------------~~---------------~~~~~t~~~~~~~~~~~~~~ 69 (240)
..+|+++|+.++|||||+++|++.. .+.. +. ...+.|....+..+.. .+.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCc
Confidence 4899999999999999999998641 1100 00 0134555555455555 677
Q ss_pred EEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCH-------HHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 70 VVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQ-------EEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+.+|||||+.++...... ..+|++++|+|++++... +....+..+. ..+ .+++++++||+|...
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~---v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEEEEEEECGGGGT
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcC---CCeEEEEEEcccccc
Confidence 8999999998866432222 889999999999854322 3333333332 222 356999999999663
No 170
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=3.9e-12 Score=112.87 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC----------------------------------------------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG---------------------------------------------- 53 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~---------------------------------------------- 53 (240)
.+|+++|..++|||||+|+|+|....+.+.....
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~ 131 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 131 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCC
Confidence 6999999999999999999999876433321110
Q ss_pred ---cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--c----C----------CCceEEEEEEECCCCCCHHHH-HHHH
Q 036363 54 ---VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--E----F----------DEIHAALVVFSVRSRFSQEEE-ATLH 113 (240)
Q Consensus 54 ---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~----~----------~~~~~~l~v~~~~~~~~~~~~-~~l~ 113 (240)
.+.......+..+....+.++||||+....... . . ..+|++++|+|++..+...+. ..+.
T Consensus 132 ~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~ 211 (772)
T 3zvr_A 132 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 211 (772)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHH
T ss_pred CCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHH
Confidence 000111112222234468899999998743211 0 0 678999999999877766664 4554
Q ss_pred HHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 114 SLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 114 ~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
.+. ....|+++|+||+|.+.+.
T Consensus 212 ~L~-----~~g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 212 EVD-----PQGQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHC-----TTCSSEEEEEECTTSSCTT
T ss_pred HHH-----hcCCCEEEEEeCcccCCcc
Confidence 442 2346799999999987653
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.47 E-value=1.4e-14 Score=126.54 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=62.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc-----------------------------cCCCCCcceeEEEEEEEEeC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMHRTVLKD 67 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 67 (240)
....+|+++|+.++|||||+++|++...... .....++|.......+.+ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 3557999999999999999999964211000 001235566666555655 6
Q ss_pred CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-----C--CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-----F--SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+..+.+|||||+.++...... ..+|++|+|+|++.+ + ..+....+..+.. ++ .+++|+|+||+|...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lg---ip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LG---ISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SS---CCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeEEEEEecccccc
Confidence 778999999999887554433 889999999999853 2 4455555544432 22 255899999999665
No 172
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.47 E-value=2.2e-13 Score=121.26 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=83.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC-cc-ccC--------------CCCCcceeEEEEEEEEeCC-------cEEEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRA-FK-SRA--------------SSSGVTSTCEMHRTVLKDG-------QVVNV 73 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~-~~~--------------~~~~~t~~~~~~~~~~~~~-------~~~~l 73 (240)
...++|+|+|+.|+|||||+++|+.... +. .+. ...+.|.........| .+ ..+++
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 3458999999999999999999974321 00 000 0134455555555566 55 78999
Q ss_pred EeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 74 IDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 74 ~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|||||+.+|...... ..+|++++|+|++++........+..+... ..|+++++||+|....
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcccc
Confidence 999999987654444 889999999999988877777777665421 2568899999996654
No 173
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.47 E-value=7.2e-14 Score=117.30 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=79.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeC----------------------CcEEEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKD----------------------GQVVNV 73 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~l 73 (240)
.+..+|+++|+.++|||||+++|+|..... ......+.|....+....+.. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 345899999999999999999999764211 111123445544443332210 157899
Q ss_pred EeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 74 IDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 74 ~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
|||||+.++...... ..+|++++|+|++++. ..+..+.+..+. .++. +++++++||+|....
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~~~---~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ-IIGQ---KNIIIAQNKIELVDK 152 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH-HHTC---CCEEEEEECGGGSCH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcCC---CcEEEEEECccCCCH
Confidence 999998765432211 6779999999999765 566666665543 3332 578999999996643
No 174
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.47 E-value=2.3e-13 Score=113.94 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=73.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCC------------CCCccee-----EEEEEEEEeCCcEEEEEeCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-RAS------------SSGVTST-----CEMHRTVLKDGQVVNVIDTPGL 79 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~------------~~~~t~~-----~~~~~~~~~~~~~~~l~DtpG~ 79 (240)
+..+|+++|++|+|||||+|+|++...... +.. ....+.. +....... ....+.+|||||+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtPGh 85 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAPGH 85 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECCCc
Confidence 448999999999999999999998532110 000 0000000 00000000 1257889999998
Q ss_pred CCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 80 FDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 80 ~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
.++...... ..+|++++|+|++++. ..+....+..+. .++. +|+++|+||+|....
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~-~~~~---~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALG-IIGV---KNLIIVQNKVDVVSK 144 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHH-HHTC---CCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHH-HcCC---CCEEEEEECccccch
Confidence 765443332 8899999999999776 555556655443 3332 579999999996643
No 175
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.47 E-value=5.5e-14 Score=114.79 Aligned_cols=116 Identities=18% Similarity=0.100 Sum_probs=75.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI 91 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~ 91 (240)
.|+|+|.+|||||||+|+|++..+..+.. ..+|.......+.+.+...+.+|||||+......... ..+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~--~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADY--HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESST--TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccC--CccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 68999999999999999999875432222 2334444444455523478999999997543222211 458
Q ss_pred eEEEEEEECCC---CCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 92 HAALVVFSVRS---RFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 92 ~~~l~v~~~~~---~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+++++|+|+++ +.+..+.. ++..+..........|+++|+||+|...
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 99999999985 44444433 3344443211123467999999999653
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.46 E-value=7.2e-14 Score=115.43 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV 97 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v 97 (240)
.+|+++|+.++|||||+++|+ ..+.|....+..+.+ .+..+.+|||||+.++...... ..+|++++|
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTLKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence 489999999999999999998 134455555555666 6778999999999887433222 789999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEe-CCCC
Q 036363 98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFS-GRDE 136 (240)
Q Consensus 98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~-~~D~ 136 (240)
+| ......+..+.+..+.. ++ .+.+++++| |+|.
T Consensus 91 vd-~~g~~~qt~e~~~~~~~-~~---i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 91 IP-PQGLDAHTGECIIALDL-LG---FKHGIIALTRSDST 125 (370)
T ss_dssp EC-TTCCCHHHHHHHHHHHH-TT---CCEEEEEECCGGGS
T ss_pred Ec-CCCCcHHHHHHHHHHHH-cC---CCeEEEEEEeccCC
Confidence 99 76777777666665543 22 244488888 9996
No 177
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.44 E-value=5.2e-13 Score=108.70 Aligned_cols=112 Identities=19% Similarity=0.111 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcE--EEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQV--VNVIDTPGLFDFSAGSEF--DEIHAAL 95 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~--~~~~~~l 95 (240)
.+|+++|.+|+|||||++.+++........ +++.......... ++.. +.+|||||...+...... ..+|+++
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCCSCC---CCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCcccC---CcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 899999999999999999999765432221 1122211222333 4444 459999999877655544 8899999
Q ss_pred EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+|+|++++.+..+. .++..+....+ ..|+++|+||+|...
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 273 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence 99999866555553 34445544332 368999999999544
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.43 E-value=1.6e-13 Score=121.58 Aligned_cols=117 Identities=25% Similarity=0.267 Sum_probs=85.0
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc--cccCC--------------CCCcceeEEEEEEEEeCCcEEEEEeC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF--KSRAS--------------SSGVTSTCEMHRTVLKDGQVVNVIDT 76 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~Dt 76 (240)
.+..+ .+|+|+|++|+|||||+++|++.... ..+.. ..+.+.........+ .+..+++|||
T Consensus 5 ~~~~~--~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDT 81 (665)
T 2dy1_A 5 GGAMI--RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDA 81 (665)
T ss_dssp -CCCE--EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEEC
T ss_pred ccCCC--cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeC
Confidence 34555 89999999999999999999854321 11100 123455555555666 7888999999
Q ss_pred CCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 77 PGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 77 pG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
||+.++...... ..+|++++|+|++.+........+..+... ..|+++++||+|..
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred CCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 999886533222 788999999999988888888887777542 25688999999966
No 179
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.43 E-value=4.2e-13 Score=116.25 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=72.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCc--cccCCCCCcceeE-EEE---------------------------------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAF--KSRASSSGVTSTC-EMH--------------------------------- 61 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~~~~~~t~~~-~~~--------------------------------- 61 (240)
...+|+|+|.+|+|||||+|+|+|.... ..+. ...|... ...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~--~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP--EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS--SCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCC--CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3489999999999999999999998653 1111 1111110 000
Q ss_pred ---EEEEeCC---cEEEEEeCCCCCCCCCC--Cc-----C------CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCC
Q 036363 62 ---RTVLKDG---QVVNVIDTPGLFDFSAG--SE-----F------DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGK 121 (240)
Q Consensus 62 ---~~~~~~~---~~~~l~DtpG~~~~~~~--~~-----~------~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~ 121 (240)
.+.+ .+ ..+.+|||||+.+.... .. . ..+|++++|+|++. .....+..++..+.
T Consensus 142 ~~~~~~~-~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----- 215 (550)
T 2qpt_A 142 RFMCAQL-PNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----- 215 (550)
T ss_dssp TEEEEEC-CCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-----
T ss_pred cceEEec-cccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-----
Confidence 0001 00 35889999999863211 00 0 67899999999985 36666666665553
Q ss_pred CcCCeEEEEEeCCCCCCC
Q 036363 122 NCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 122 ~~~~~~i~v~~~~D~~~~ 139 (240)
....++++|+||+|.+..
T Consensus 216 ~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 216 GHEDKIRVVLNKADMVET 233 (550)
T ss_dssp TCGGGEEEEEECGGGSCH
T ss_pred hcCCCEEEEEECCCccCH
Confidence 223579999999997754
No 180
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.43 E-value=1.1e-13 Score=120.63 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=74.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------------CCCCCcceeEEEEEEEEeC----CcEEEEEeCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMHRTVLKD----GQVVNVIDTPGLFD 81 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~l~DtpG~~~ 81 (240)
.++|+++|+.|+|||||+++|+........ ....+.|.........|.. +..+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 589999999999999999999753211000 0113445544444555521 25789999999988
Q ss_pred CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
+...... ..+|++++|+|++++.+.+....|..+... ..|+++|+||+|....
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAA 138 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCcccc
Confidence 7554333 788999999999988888877777665431 2579999999996543
No 181
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.43 E-value=1.3e-13 Score=119.81 Aligned_cols=117 Identities=23% Similarity=0.290 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCc-cc-c-----------CCCCCcceeEEEEEEEEe--C--CcEEEEEeCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAF-KS-R-----------ASSSGVTSTCEMHRTVLK--D--GQVVNVIDTPGLF 80 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~-~~-~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~ 80 (240)
..++|+++|+.++|||||+++|++.... .. . ....+.|.........|. + ...+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3589999999999999999999753110 00 0 001233443333334442 1 2578899999999
Q ss_pred CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
++...... ..+|++++|+|++++.+.+....+..+... ..|+++++||+|....
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSA 140 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCcccc
Confidence 87543333 789999999999988888887777665431 2569999999996543
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.43 E-value=2.3e-13 Score=115.96 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=67.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC-cc-------------cc---------------CCCCCcceeEEEEEEEEeC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRA-FK-------------SR---------------ASSSGVTSTCEMHRTVLKD 67 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (240)
....+|+++|+.++|||||+++|++... +. .+ ....+.|....+..+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 3457999999999999999999974211 00 00 00134555555555556 6
Q ss_pred CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCC-------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFS-------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
+..+.+|||||+.++...... ..+|++++|+|++++.. .+....+..+. ..+ .+++++++||+|...
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~---vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG---INHLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT---CSSEEEEEECTTSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcC---CCEEEEEEECccCCC
Confidence 788999999999988655444 88999999999986531 23333333332 222 245899999999643
No 183
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.43 E-value=3.5e-13 Score=108.48 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC-C--cC--CCceEEE
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG-S--EF--DEIHAAL 95 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~--~~--~~~~~~l 95 (240)
+|+++|.+|+||||+++.+.+...+. .....+.|........ .....+.+|||||+..+... . .. +++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence 58999999999999999888664322 1111223333222222 13468899999999998642 1 22 8999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHh-CCCcCCeEEEEEeCCCCCCC
Q 036363 96 VVFSVRSRFSQEEEATLHSLQTLF-GKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 96 ~v~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~i~v~~~~D~~~~ 139 (240)
+|+|++++ .......|..+.... ......|+++++||+|...+
T Consensus 78 lV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 78 YVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp EECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 99999976 444444443332211 11123679999999996543
No 184
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.41 E-value=7e-13 Score=114.96 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=73.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEE----EEEEe---CCcEEEEEeCCCCCCCCCCCcC--
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMH----RTVLK---DGQVVNVIDTPGLFDFSAGSEF-- 88 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~l~DtpG~~~~~~~~~~-- 88 (240)
...+|+++|.+|+|||||+|++++...........+.+...... ..... .+..+.+|||||...+......
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l 119 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM 119 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence 34899999999999999999999876432222222222211100 00110 2468999999998777665444
Q ss_pred CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..+|++++|+|+++. .....++..+....+ ..|+++|+||+|....
T Consensus 120 ~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTD--SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPS 165 (535)
T ss_dssp HSSEEEEEEECGGGG--GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTT
T ss_pred cCCcEEEEEEeCCCc--hhHHHHHHHHHHhCC---CCCEEEEEECCCcccc
Confidence 789999999999743 233455556655432 2679999999996543
No 185
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.39 E-value=2.3e-13 Score=123.30 Aligned_cols=115 Identities=24% Similarity=0.321 Sum_probs=80.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeEEEEEEEEe---------------CC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMHRTVLK---------------DG 68 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~ 68 (240)
..++|+|+|+.|+|||||+++|++....... ....+.|.........|. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4589999999999999999999864211110 001233433333334441 15
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
..+++|||||+.++...... +.+|++++|+|++++.+.+....|..+.. . ..|+++++||+|..
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~--~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---E--RIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---T--TCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---c--CCCeEEEEECCCcc
Confidence 67899999999998765444 88999999999998888888777766543 1 25789999999965
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.38 E-value=3.6e-12 Score=106.13 Aligned_cols=81 Identities=16% Similarity=0.077 Sum_probs=43.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEE---------------------EEeC---CcEEEEEe
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRT---------------------VLKD---GQVVNVID 75 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~---~~~~~l~D 75 (240)
.+|+++|.+|+|||||+|+|++.....+.. .++|........ .+ + ...+.+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~--p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~-~~~~~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANY--PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR-NGLALIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE-TTEEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCcccCCceEEEeeccCCchHHhhhhccccccccc-CCcceEEEEEEE
Confidence 379999999999999999999976221211 222322221111 11 2 24689999
Q ss_pred CCCCCCCCCCC---------cCCCceEEEEEEECCCC
Q 036363 76 TPGLFDFSAGS---------EFDEIHAALVVFSVRSR 103 (240)
Q Consensus 76 tpG~~~~~~~~---------~~~~~~~~l~v~~~~~~ 103 (240)
|||+....... ..+.+|++++|+|+++.
T Consensus 78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99996532111 11889999999999854
No 187
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.38 E-value=4.6e-14 Score=124.37 Aligned_cols=116 Identities=21% Similarity=0.312 Sum_probs=89.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh---CCCCccc----cC-C--------CCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSIL---GRRAFKS----RA-S--------SSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~---g~~~~~~----~~-~--------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
.++|+|+|+.++|||||..+|+ |.....+ +. . ..|.|......++.| ++..++++||||+.||
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 4789999999999999999986 3211100 00 0 015566666666777 8899999999999999
Q ss_pred CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363 83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140 (240)
Q Consensus 83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~ 140 (240)
...... +.+|++++|+|+..+...+....|+.+.+. . .|.++++||+|....+
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~---lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--G---IPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--T---CSCEECCEECCSSSCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--C---CCeEEEEeccccccCC
Confidence 876665 999999999999999999999999888754 1 3568889999976553
No 188
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.38 E-value=8.8e-13 Score=106.09 Aligned_cols=140 Identities=18% Similarity=0.158 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCC----CcceeEEEEEEEEe---CCcEEEEEeCCCCCCC-------CC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR-RAFKSRASSS----GVTSTCEMHRTVLK---DGQVVNVIDTPGLFDF-------SA 84 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~~~~----~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~-------~~ 84 (240)
.+|+|+|++|+|||||+|+|+|. ..+.++.... ..+........... ....+.+|||||+... ..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 67799999999999999999987 4333331100 11111111111110 1246899999999432 21
Q ss_pred CCc-------C---------------CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc
Q 036363 85 GSE-------F---------------DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND 141 (240)
Q Consensus 85 ~~~-------~---------------~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~ 141 (240)
... . ..+++++|+++++. .++..+...++.+ .. ..++++|+||.|.....
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l----~~--~~~iilV~~K~Dl~~~~- 171 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTLK- 171 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH----TT--TSCEEEEECCGGGSCHH-
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH----Hh--cCCEEEEEEeCCCCCHH-
Confidence 111 0 34567888888764 4888775444443 22 24699999999965432
Q ss_pred ccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363 142 ETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172 (240)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
.+..+.. .+...+...+..++.++.
T Consensus 172 -e~~~~~~-----~~~~~~~~~~~~~~e~Sa 196 (301)
T 2qnr_A 172 -ERERLKK-----RILDEIEEHNIKIYHLPD 196 (301)
T ss_dssp -HHHHHHH-----HHHHHHHHTTCCCCCCC-
T ss_pred -HHHHHHH-----HHHHHHHHcCCeEEecCC
Confidence 2222111 234455555555554443
No 189
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.38 E-value=7.1e-13 Score=118.30 Aligned_cols=118 Identities=29% Similarity=0.326 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcc-------c---------cCCCCCcceeEEEEEEEEe------CCcEEEEE
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRAFK-------S---------RASSSGVTSTCEMHRTVLK------DGQVVNVI 74 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-------~---------~~~~~~~t~~~~~~~~~~~------~~~~~~l~ 74 (240)
...++|+|+|+.++|||||..+|+-..... . .....+.|......+..|. ++..++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 456899999999999999999986322110 0 0112355666666666662 24689999
Q ss_pred eCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 75 DTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 75 DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
||||+.||...... +-+|++++|+|+..+...+....|+.+... ..|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEccccccCc
Confidence 99999999876665 899999999999999999999999998754 2468999999997654
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.37 E-value=2.8e-12 Score=107.13 Aligned_cols=124 Identities=15% Similarity=0.040 Sum_probs=78.1
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC-cEEEEEeCCCCCCCCCCC
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG-QVVNVIDTPGLFDFSAGS 86 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~ 86 (240)
.+++|.+..+ ..|+|+|++|||||||+++|++..+...+. ...|.......+.+ .+ ..+.++||||+.......
T Consensus 148 ~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~--~ftTl~p~~G~V~~-~~~~~~~l~DtpGli~~a~~~ 222 (416)
T 1udx_A 148 RRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEG 222 (416)
T ss_dssp EEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGS
T ss_pred eeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCCccccCc--ccceecceeeEEEe-cCcceEEEEeccccccchhhh
Confidence 4577777777 789999999999999999999986432222 22233333334444 43 788999999997542211
Q ss_pred cC---------CCceEEEEEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 87 EF---------DEIHAALVVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 87 ~~---------~~~~~~l~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.. ..++.++++++++ +-...+... .+.+......-...|.++|+||+|..
T Consensus 223 ~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 223 KGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred hhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 11 5689999999997 333333222 22222210001125688999999954
No 191
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.37 E-value=2.4e-12 Score=96.21 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
.+|+++|++|+|||||+|++++...... .. .+.+..... ..+ . .+.+|||||+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~-~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~ 58 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG-KR-PGVTRKIIE--IEW-K--NHKIIDMPGFGFMM 58 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSS-SS-TTCTTSCEE--EEE-T--TEEEEECCCBSCCT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccC-CC-CCccceeEE--Eec-C--CEEEEECCCccccc
Confidence 5899999999999999999999864322 22 233433322 222 3 68899999976543
No 192
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.36 E-value=1.1e-12 Score=120.11 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=76.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC------cc--------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
+..+|+++|+.++|||||+++|++... +. ......|.|.......+.. .+..+.+|||||+.++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHHHH
Confidence 458999999999999999999986410 00 0011234444433333444 56789999999998764
Q ss_pred CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..... ..+|++++|+|++++...+....+..+.. .+ .+++++++||+|...
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lg---IP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VG---VPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HT---CSCEEEEEECCTTCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cC---CCeEEEEEeeccccc
Confidence 32221 78999999999997777777777665543 22 244889999999654
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.22 E-value=8.8e-12 Score=97.98 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=31.1
Q ss_pred CceEEEEEEECCCC--CCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 90 EIHAALVVFSVRSR--FSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 90 ~~~~~l~v~~~~~~--~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
++|++++|+|++++ .+.... .++..+...... ...|+++|+||+|..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence 58999999999976 676653 444445443211 136799999999954
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.13 E-value=1.4e-10 Score=94.89 Aligned_cols=120 Identities=12% Similarity=0.006 Sum_probs=67.6
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc------cCCCCC---------------------cceeE
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS------RASSSG---------------------VTSTC 58 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~------~~~~~~---------------------~t~~~ 58 (240)
+.+++++....+ ..|+++|++|+|||||+|.|++.....+ +..+.. ....+
T Consensus 45 ~~~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~ 122 (341)
T 2p67_A 45 LLDAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 122 (341)
T ss_dssp HHHHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEE
T ss_pred HHHhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceee
Confidence 344566777777 9999999999999999999974321000 000000 00000
Q ss_pred EEEE-----------------EEEeCCcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCC
Q 036363 59 EMHR-----------------TVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGK 121 (240)
Q Consensus 59 ~~~~-----------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~ 121 (240)
.... +.+ .+..+.++||||+.++... ....+|++++|++++..... ..+.. ...
T Consensus 123 ~~~~~~~l~g~~~~~~~~~~~~~~-~~~~i~liDTpG~~~~~~~-~~~~aD~vl~Vvd~~~~~~~---~~l~~--~~~-- 193 (341)
T 2p67_A 123 PVPSSGHLGGASQRARELMLLCEA-AGYDVVIVETVGVGQSETE-VARMVDCFISLQIAGGGDDL---QGIKK--GLM-- 193 (341)
T ss_dssp EECC-----CHHHHHHHHHHHHHH-TTCSEEEEEEECCTTHHHH-HHTTCSEEEEEECC---------CCCCH--HHH--
T ss_pred cCccccccchhHHHHHHHHHHhhc-cCCCEEEEeCCCccchHHH-HHHhCCEEEEEEeCCccHHH---HHHHH--hhh--
Confidence 0000 002 4668999999998754321 11789999999998632111 11110 001
Q ss_pred CcCCeEEEEEeCCCCCC
Q 036363 122 NCFDYMIVVFSGRDELE 138 (240)
Q Consensus 122 ~~~~~~i~v~~~~D~~~ 138 (240)
..|.++|+||+|...
T Consensus 194 --~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 194 --EVADLIVINKDDGDN 208 (341)
T ss_dssp --HHCSEEEECCCCTTC
T ss_pred --cccCEEEEECCCCCC
Confidence 135789999999653
No 195
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=1.7e-10 Score=95.53 Aligned_cols=85 Identities=18% Similarity=0.070 Sum_probs=58.8
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC-----------------cEEEEEe
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG-----------------QVVNVID 75 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~D 75 (240)
.+..+ .+|+|+|+||+|||||+|+|+|........ .+++|.......+.+ .+ ..+.+||
T Consensus 16 ~v~~g--~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~-~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 16 RPGNN--LKTGIVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp SSSSC--CEEEEEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred cccCC--CEEEEECCCCCCHHHHHHHHHCCCcccccC-CCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence 44555 899999999999999999999965412221 123333333333444 32 3578999
Q ss_pred CCCCCCCCCCCcC---------CCceEEEEEEECC
Q 036363 76 TPGLFDFSAGSEF---------DEIHAALVVFSVR 101 (240)
Q Consensus 76 tpG~~~~~~~~~~---------~~~~~~l~v~~~~ 101 (240)
|||+....+.... ..+|++++|+++.
T Consensus 92 ~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAF 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999876554332 7889999999986
No 196
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.11 E-value=4.6e-11 Score=99.58 Aligned_cols=125 Identities=22% Similarity=0.216 Sum_probs=76.2
Q ss_pred ccCCccccCCCCC------------------ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-EEEEEEEEe
Q 036363 6 IDDDCELTSPSNG------------------VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMHRTVLK 66 (240)
Q Consensus 6 ~~~~~~~~~~~~~------------------~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~ 66 (240)
+++++++.+.+|. ...++|+|+||||||||+|+|+|...+..+....+.+.. .........
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~ 117 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 117 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc
Confidence 5677888888882 119999999999999999999998766665543332211 001111111
Q ss_pred CCcEEEEEeCCCCCCCCCCCcC-------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 67 DGQVVNVIDTPGLFDFSAGSEF-------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~-------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
....++++|+||+......... ...+.+++ ++.. +...........+... ..|+++|.|+.|.+
T Consensus 118 ~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll 188 (413)
T 1tq4_A 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD 188 (413)
T ss_dssp SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence 1235789999998643211111 23344444 6665 3555555555555431 26799999999864
No 197
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.10 E-value=5.4e-10 Score=98.03 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc-cccC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRRAF-KSRA 49 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~~~-~~~~ 49 (240)
.|+|+|++|||||||+++|+|...+ .+|.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~ 76 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGI 76 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCe
Confidence 4999999999999999999998655 3443
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=5.6e-11 Score=97.28 Aligned_cols=80 Identities=16% Similarity=0.029 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC-----------------cEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG-----------------QVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 82 (240)
.+|+|||.+|+|||||+|+|++.....+.. +++|.......+.+ .+ ..+.+|||||+..+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~--p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANY--PFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 689999999999999999999866322211 22233322222333 22 46899999999875
Q ss_pred CC----CCcC-----CCceEEEEEEECCC
Q 036363 83 SA----GSEF-----DEIHAALVVFSVRS 102 (240)
Q Consensus 83 ~~----~~~~-----~~~~~~l~v~~~~~ 102 (240)
.. .... +.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 31 1111 78999999999984
No 199
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.09 E-value=2.7e-12 Score=106.09 Aligned_cols=110 Identities=21% Similarity=0.220 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-----CCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------ 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------ 88 (240)
.+|+++|.+|+|||||+|+|++. .....+. ..++|..... ..+ +..+.++||||+.+.......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY-FPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-CTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecC-CCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 68999999999999999999986 2222221 2344544332 222 334789999999876422211
Q ss_pred ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..++.++|++++...+-......+..+ .....++++++||.|.+..
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l-----~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYI-----KGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEE-----ESSSEEEEEEECTTSCEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEEEEc-----cCCCceEEEEecCCccccc
Confidence 778999999988421111111112222 1223579999999997743
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.08 E-value=9.5e-11 Score=96.86 Aligned_cols=86 Identities=17% Similarity=0.109 Sum_probs=46.8
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC----------------CcEEEEEeC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD----------------GQVVNVIDT 76 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dt 76 (240)
.+..+ .+|+|+|.+|+|||||+|+|++.....+. ..++|.......+.+++ ...+.+|||
T Consensus 18 ~i~~~--~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~--~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 18 RFGTS--LKIGIVGLPNVGKSTFFNVLTNSQASAEN--FPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp CSSSC--CCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred hccCC--CEEEEECCCCCCHHHHHHHHHCCCccccC--CCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 33444 89999999999999999999997542221 12333333333333311 224899999
Q ss_pred CCCCCCCCCCcC---------CCceEEEEEEECCC
Q 036363 77 PGLFDFSAGSEF---------DEIHAALVVFSVRS 102 (240)
Q Consensus 77 pG~~~~~~~~~~---------~~~~~~l~v~~~~~ 102 (240)
||+..+...... +.+|++++|+|+.+
T Consensus 94 pGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 94 AGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 999876543211 88999999999873
No 201
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.08 E-value=5.7e-12 Score=104.04 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcc-----ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------ 88 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------ 88 (240)
.+|+++|.+|+|||||+|+|++..... ......++|..... ..+ +..+.++||||+.+.......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 689999999999999999999863211 11112344443332 222 223789999999876532221
Q ss_pred ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363 89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA 139 (240)
Q Consensus 89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~ 139 (240)
..++.++|++++...........+..+ .....|+++++||.|.+..
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l-----~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYV-----SGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEE-----ESSSEEEEEEECTTSCEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEEEEEe-----cCCCceEEEEecCcccccc
Confidence 677888888887421111111112222 1223579999999998754
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=5.7e-12 Score=102.90 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=32.1
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.+++++++.+..+ ..++|+|+||||||||+|.|+|.
T Consensus 43 ~~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999 99999999999999999999853
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.03 E-value=2.9e-10 Score=93.53 Aligned_cols=81 Identities=22% Similarity=0.140 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--------------------CCcEEEEEeCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--------------------DGQVVNVIDTPGL 79 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~l~DtpG~ 79 (240)
.+|+++|.+|+|||||+|+|++........ .++|.........++ ....+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~--p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANY--PFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSC--CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCC--CCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 579999999999999999999864211111 112222111111110 2346899999999
Q ss_pred CCCCCCCcC---------CCceEEEEEEECCC
Q 036363 80 FDFSAGSEF---------DEIHAALVVFSVRS 102 (240)
Q Consensus 80 ~~~~~~~~~---------~~~~~~l~v~~~~~ 102 (240)
..+...... +.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 876543221 78999999999974
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.02 E-value=2.4e-09 Score=88.07 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 67 DGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+..+.+|||||+...... ....+|++++|+++....... . +.. .-...|.++|+||+|..
T Consensus 170 ~~~~~iiiDTpGi~~~~~~-~~~~aD~vl~V~d~~~~~~~~---~---l~~---~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQSEVA-VANMVDTFVLLTLARTGDQLQ---G---IKK---GVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSSHHHH-HHTTCSEEEEEEESSTTCTTT---T---CCT---TSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCcHHHH-HHHhCCEEEEEECCCCCccHH---H---HHH---hHhhcCCEEEEECCCCc
Confidence 3568899999996532110 017899999999987322111 1 110 00113689999999954
No 205
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.00 E-value=1.4e-10 Score=95.46 Aligned_cols=46 Identities=30% Similarity=0.373 Sum_probs=40.8
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 14 g~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~ 59 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGD 59 (381)
T ss_dssp TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCEEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCeE
Confidence 4556889999999999 999999999999999999999988766554
No 206
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.98 E-value=2e-10 Score=93.92 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+||||||||||+++|+|...+.+|.
T Consensus 15 ~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~ 60 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDSGE 60 (359)
T ss_dssp TTEEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCEEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCCcE
Confidence 4556889999999999 999999999999999999999988766654
No 207
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.96 E-value=1.2e-09 Score=89.29 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=38.9
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 42 ~aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~ 84 (366)
T 3tui_C 42 QALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEGS 84 (366)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCCceE
Confidence 5789999999999 999999999999999999999988766543
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.96 E-value=6.2e-10 Score=91.29 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=34.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 67 DGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
.+..+.++||||+.... ......+|.+++|+++..+... ..+.. ..+. .+.++|+||+|..
T Consensus 165 ~~~~~iliDT~Gi~~~~-~~l~~~~d~vl~V~d~~~~~~~---~~i~~--~il~----~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE-FAVADMVDMFVLLLPPAGGDEL---QGIKR--GIIE----MADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH-HHHHTTCSEEEEEECCC-----------------CC----SCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh-hhHHhhCCEEEEEEcCCcchhH---HHhHH--HHHh----cCCEEEEeeecCC
Confidence 45678999999986321 0011788999999998743211 11111 1111 3578999999954
No 209
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.93 E-value=4.8e-10 Score=92.37 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|..
T Consensus 14 ~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (372)
T 1g29_1 14 GEVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60 (372)
T ss_dssp TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred CCEEEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCccEE
Confidence 3456789999999999 9999999999999999999999887666543
No 210
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.93 E-value=3.2e-10 Score=92.87 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=40.2
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 14 ~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59 (359)
T ss_dssp TTEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCEEEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCccE
Confidence 3456789999999999 999999999999999999999987766553
No 211
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.92 E-value=3e-10 Score=92.81 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=40.6
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 26 g~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 71 (355)
T 1z47_A 26 GGARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKGD 71 (355)
T ss_dssp TSTTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCCEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence 4456899999999999 999999999999999999999988766554
No 212
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.92 E-value=1.7e-09 Score=93.83 Aligned_cols=99 Identities=21% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEE--eCCcEEEEEeCCCCCCCCC-CCcC----
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVL--KDGQVVNVIDTPGLFDFSA-GSEF---- 88 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~-~~~~---- 88 (240)
++..+|+|+|.+|+|||||+|.|+|... +..+..+.+.|.....+.... ..+..+.++||||+.+... ....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 3458899999999999999999999764 222222223333332222111 1456899999999987643 1211
Q ss_pred -----CCceEEEEEEECCCCCCHHHHHHHHHHHH
Q 036363 89 -----DEIHAALVVFSVRSRFSQEEEATLHSLQT 117 (240)
Q Consensus 89 -----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~ 117 (240)
...+ ++|+++...++..+...+..+.+
T Consensus 116 fala~llss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 116 FALAVLLSS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHCS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHhcC--eEEEECCCCccHHHHHHHHHHHH
Confidence 1112 45566666788888766665544
No 213
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.92 E-value=1.3e-09 Score=84.05 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=39.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+..++++++|++++| ..++|+|+||||||||++.|+|...+.+|
T Consensus 20 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 20 GTPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp SCCSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 356899999999999 99999999999999999999998765544
No 214
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.88 E-value=4.2e-10 Score=86.59 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=39.6
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 16 ~~~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~ 60 (224)
T 2pcj_A 16 GYEILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTEGK 60 (224)
T ss_dssp TEEEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSEEE
T ss_pred CEeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 456889999999999 999999999999999999999987665543
No 215
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.88 E-value=4.6e-10 Score=92.34 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 23 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 67 (372)
T 1v43_A 23 NFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67 (372)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CEEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCceE
Confidence 446789999999999 999999999999999999999988766553
No 216
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.88 E-value=1e-09 Score=85.48 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|.+++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 14 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 58 (243)
T 1mv5_A 14 SEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58 (243)
T ss_dssp SSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred CCceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 456899999999999 999999999999999999999987665554
No 217
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.88 E-value=5e-10 Score=88.33 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=40.5
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 22 ~~~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 67 (266)
T 4g1u_C 22 QQQALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67 (266)
T ss_dssp TTEEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCCSSCE
T ss_pred CCeeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 3557899999999999 999999999999999999999987665543
No 218
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.87 E-value=5.3e-10 Score=87.82 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=40.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 18 ~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~ 63 (257)
T 1g6h_A 18 GEFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR 63 (257)
T ss_dssp TTEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CCEeeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 3456889999999999 999999999999999999999987765553
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.87 E-value=3e-09 Score=84.56 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=38.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
..+|+++|.+|+|||||+|+|+|......+.. .++|..... .. .+..+.++||||+....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQW--VK--VGKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEE--EE--eCCCEEEEECcCcCCCC
Confidence 37999999999999999999999765444332 344444332 11 24478899999998654
No 220
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.87 E-value=5.3e-10 Score=91.53 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=38.9
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
++++++|++++| ..++|+|+||||||||+++|+|...+.+|..
T Consensus 20 vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 62 (353)
T 1oxx_K 20 ALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62 (353)
T ss_dssp EEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred eEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 789999999999 9999999999999999999999887666543
No 221
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.87 E-value=6.1e-10 Score=87.66 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=40.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 17 ~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~ 62 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA 62 (262)
T ss_dssp TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CCEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3456889999999999 999999999999999999999987765544
No 222
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.87 E-value=6.6e-10 Score=87.40 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 36 ~~~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~ 80 (263)
T 2olj_A 36 SLEVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80 (263)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CEEEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Confidence 456889999999999 999999999999999999999987665543
No 223
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.86 E-value=1.1e-09 Score=85.81 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 17 ~~~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61 (253)
T ss_dssp TTEEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred CCeEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 456899999999999 899999999999999999999987665543
No 224
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.86 E-value=7.3e-10 Score=86.86 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 27 ~~~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~ 71 (256)
T 1vpl_A 27 KKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSGI 71 (256)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CEEEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 456889999999999 999999999999999999999987665543
No 225
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.84 E-value=7.9e-10 Score=87.51 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=39.1
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 21 ~~~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~ 64 (275)
T 3gfo_A 21 THALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKPSSGR 64 (275)
T ss_dssp CEEEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCeE
Confidence 34899999999999 999999999999999999999987665543
No 226
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.84 E-value=8.7e-10 Score=85.41 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=38.8
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 19 ~~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~ 61 (235)
T 3tif_A 19 YALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61 (235)
T ss_dssp EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred eeEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCceE
Confidence 4789999999999 999999999999999999999987765543
No 227
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=84.98 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|.+++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 17 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (237)
T 2cbz_A 17 DPPTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61 (237)
T ss_dssp SCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEEEE
T ss_pred CCceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 357899999999999 999999999999999999999987655443
No 228
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.84 E-value=7.5e-10 Score=86.07 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=39.6
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 18 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 62 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62 (240)
T ss_dssp TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CeeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 346889999999999 999999999999999999999987665543
No 229
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.83 E-value=9.2e-10 Score=85.90 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 21 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 65 (247)
T 2ff7_A 21 SPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65 (247)
T ss_dssp SCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 356899999999999 999999999999999999999987665543
No 230
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.83 E-value=8.2e-10 Score=87.66 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 33 ~~~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~ 77 (279)
T 2ihy_A 33 GKTILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATSGT 77 (279)
T ss_dssp TEEEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred CEEEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence 456889999999999 999999999999999999999987766543
No 231
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.82 E-value=8.2e-10 Score=84.21 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=38.5
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|.+++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 23 ~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 65 (214)
T 1sgw_A 23 PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65 (214)
T ss_dssp EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 6789999999999 899999999999999999999987655543
No 232
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.81 E-value=1.9e-09 Score=85.22 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=39.6
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 32 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~ 75 (271)
T 2ixe_A 32 VQVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTGGK 75 (271)
T ss_dssp SCCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred ceeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 56899999999999 999999999999999999999987665543
No 233
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.79 E-value=1.3e-08 Score=86.91 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=65.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCC-CCcc----------eeEEEEEE----------------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSIL------GRRAFKSRASS-SGVT----------STCEMHRT---------------- 63 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~-~~~t----------~~~~~~~~---------------- 63 (240)
....+|+++|++|+||||+++.|+ |.........+ .+.. .....+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345899999999999999999998 65321111000 0000 00000110
Q ss_pred -EEeCCcEEEEEeCCCCCCCCCCCc-C-------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363 64 -VLKDGQVVNVIDTPGLFDFSAGSE-F-------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR 134 (240)
Q Consensus 64 -~~~~~~~~~l~DtpG~~~~~~~~~-~-------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~ 134 (240)
.+ .+..+.|+||||......... . ..+|.+++|+|+....+ .......+.+. .+...+|+||+
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-----~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-----VDVASVIVTKL 250 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-----HCCCCEEEECT
T ss_pred HHH-CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-----cCceEEEEeCC
Confidence 11 456789999999875422100 0 36889999999985543 33333333321 12248899999
Q ss_pred CCCC
Q 036363 135 DELE 138 (240)
Q Consensus 135 D~~~ 138 (240)
|...
T Consensus 251 D~~~ 254 (504)
T 2j37_W 251 DGHA 254 (504)
T ss_dssp TSCC
T ss_pred cccc
Confidence 9653
No 234
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.77 E-value=6.8e-09 Score=90.81 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=39.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++++|+||+|||||++.|+|...+.+|.
T Consensus 356 ~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 399 (582)
T 3b5x_A 356 KPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDVDSGS 399 (582)
T ss_pred ccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 56899999999999 999999999999999999999987666554
No 235
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.77 E-value=2.1e-09 Score=84.77 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=39.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 20 ~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~ 63 (266)
T 2yz2_A 20 KKALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63 (266)
T ss_dssp EEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred cceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 35899999999999 999999999999999999999987765554
No 236
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.75 E-value=1.7e-09 Score=84.53 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=35.5
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+..++++++|++++| ..++|+|+||||||||++.|+|.
T Consensus 15 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 15 GETILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999 99999999999999999999997
No 237
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.75 E-value=2.3e-09 Score=84.57 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=36.0
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+..++++++|++++| ..++|+|+||||||||++.|+|..
T Consensus 32 ~~~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 32 DKAILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999 999999999999999999999973
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.75 E-value=3.2e-09 Score=89.85 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=84.0
Q ss_pred cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC--Ccc---------------eeEEEEEEEE----
Q 036363 7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSS--GVT---------------STCEMHRTVL---- 65 (240)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~--~~t---------------~~~~~~~~~~---- 65 (240)
.++++|.+..| ..|+|+|+||||||||++.|+|.....++.... +.+ ..+.+.....
T Consensus 283 ~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 46788988888 999999999999999999998764332222111 000 0011111100
Q ss_pred ------------eCCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 036363 66 ------------KDGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLF 119 (240)
Q Consensus 66 ------------~~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~ 119 (240)
..+..+.++||+|........-. ..++-+++|+|++.+ ......++.+.+.+
T Consensus 361 ~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~ 438 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV 438 (503)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhc
Confidence 02346789999998644221100 237788889988733 23334444444433
Q ss_pred CCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 120 GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 120 ~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
+ ...+|+||.|.... ...+..++...+.++.++...
T Consensus 439 ~-----itgvIlTKLD~tak-------------gG~~lsi~~~~~~PI~fig~G 474 (503)
T 2yhs_A 439 G-----LTGITLTKLDGTAK-------------GGVIFSVADQFGIPIRYIGVG 474 (503)
T ss_dssp C-----CSEEEEECGGGCSC-------------CTHHHHHHHHHCCCEEEEECS
T ss_pred C-----CCEEEEEcCCCccc-------------ccHHHHHHHHHCCCEEEEecC
Confidence 3 25689999995322 223445555556666655544
No 239
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.74 E-value=2.2e-09 Score=86.14 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=39.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|++++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 66 ~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~ 110 (306)
T 3nh6_A 66 GRETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDISSGC 110 (306)
T ss_dssp TCEEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCSEEE
T ss_pred CCceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCcE
Confidence 456889999999999 999999999999999999999987665543
No 240
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.74 E-value=1e-09 Score=95.83 Aligned_cols=44 Identities=32% Similarity=0.302 Sum_probs=39.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++++|+||||||||++.|+|...+.+|.
T Consensus 354 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 354 APILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CcceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 46889999999999 999999999999999999999987665543
No 241
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.74 E-value=7.3e-09 Score=83.12 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=82.6
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC------CCc-------c----eeEEEEEEEE-----
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS------SGV-------T----STCEMHRTVL----- 65 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~------~~~-------t----~~~~~~~~~~----- 65 (240)
.+++|.+.+| ..++++|+||||||||++.|+|...+.++... ... . ..+.+..+..
T Consensus 91 ~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 4678888888 99999999999999999999886443332210 000 0 0111111100
Q ss_pred ------------eCCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 036363 66 ------------KDGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLF 119 (240)
Q Consensus 66 ------------~~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~ 119 (240)
..+....++||.|........-. ..|+-+++++|++..++... .+..+.+..
T Consensus 169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~ 246 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV 246 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc
Confidence 01234568999998654321100 45776777888775554442 233343322
Q ss_pred CCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 120 GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 120 ~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
+ ..++++||.|.... ....-.+....+.++.++...
T Consensus 247 g-----~t~iiiThlD~~~~-------------~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 247 G-----ITGLILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp C-----CCEEEEECCSSCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred C-----CCEEEEeCCCCCCc-------------cChheehHHHHCCCEEEEeCC
Confidence 2 36788999884422 122344555667777777654
No 242
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.73 E-value=7.4e-09 Score=81.43 Aligned_cols=60 Identities=30% Similarity=0.421 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA 84 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (240)
.+++++|.+|+|||||+|+|+|......+.. .+.|...... . .+..+.+|||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQWF--S--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE--E--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEEE--E--eCCCEEEEECCCcccCcC
Confidence 4899999999999999999999765433332 3444433211 1 345788999999987643
No 243
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.73 E-value=2.6e-09 Score=93.66 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=39.5
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++++|+||||||||++.|+|...+.+|.
T Consensus 368 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 411 (598)
T 3qf4_B 368 KPVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411 (598)
T ss_dssp SCSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred CccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence 46899999999999 999999999999999999999987665543
No 244
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.73 E-value=4.1e-09 Score=86.42 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 14 ~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (362)
T 2it1_A 14 GNFTALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59 (362)
T ss_dssp SSSEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCceE
Confidence 3456889999999999 999999999999999999999987765543
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.72 E-value=4e-09 Score=84.54 Aligned_cols=65 Identities=26% Similarity=0.304 Sum_probs=37.7
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS 83 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (240)
+.+.+| ..++|+|+||+|||||+|+|+|...+.++.... .+|.... .... . ..+++||||+..+.
T Consensus 168 ~~~~~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 168 IPHFQD--KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSLE 238 (307)
T ss_dssp GGGGTT--SEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSCC
T ss_pred HhhcCC--CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCccccc
Confidence 445567 899999999999999999999987665554432 1222111 1111 2 35799999987753
No 246
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.72 E-value=2.2e-09 Score=77.93 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=36.8
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
.++++++|.+++| ..++|+|+||||||||++.|+|.. +.++..
T Consensus 21 ~~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 21 FAEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp HHHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred HHHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 3567889999999 999999999999999999999977 555543
No 247
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.71 E-value=4.1e-09 Score=82.25 Aligned_cols=40 Identities=23% Similarity=0.147 Sum_probs=36.7
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFK 46 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~ 46 (240)
.++++++|.+++| ..++|+|+||||||||++.|+|...+.
T Consensus 14 ~vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 14 TRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TTEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4688999999999 999999999999999999999987655
No 248
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.71 E-value=5e-09 Score=83.52 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 51 ~~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 94 (290)
T 2bbs_A 51 TPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94 (290)
T ss_dssp CCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEEEE
T ss_pred ceEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 46789999999999 999999999999999999999987665543
No 249
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.70 E-value=2.2e-09 Score=93.95 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=39.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
...++++++|++++| ..++++|+||||||||++.|+|...+.+|.
T Consensus 355 ~~~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp SCCSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred CCcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence 356899999999999 999999999999999999999987665543
No 250
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.68 E-value=1.3e-08 Score=83.29 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=82.3
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-Cc-c---------------eeEEEEEEEEe----
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSS-GV-T---------------STCEMHRTVLK---- 66 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~-~~-t---------------~~~~~~~~~~~---- 66 (240)
.+++|.+.++ ..|+++|+||||||||++.|+|...+.++.... +. + ..+.+..+...
T Consensus 148 ~~l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCC--eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 4577888888 999999999999999999998864433221100 00 0 01111111000
Q ss_pred -------------CCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 036363 67 -------------DGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLF 119 (240)
Q Consensus 67 -------------~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~ 119 (240)
.+....++||.|........-. ..|+-+++|+|++.+++... .+..+.+..
T Consensus 226 ~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~ 303 (359)
T 2og2_A 226 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV 303 (359)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT
T ss_pred hhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc
Confidence 1234578999998654321100 45777788888775554432 233333322
Q ss_pred CCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 120 GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 120 ~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
+ ..++++||.|.... .-..-.+....+.++.++...
T Consensus 304 g-----~t~iiiThlD~~~~-------------gG~~lsi~~~~~~pI~~ig~G 339 (359)
T 2og2_A 304 G-----ITGLILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG 339 (359)
T ss_dssp C-----CCEEEEESCTTCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred C-----CeEEEEecCccccc-------------ccHHHHHHHHhCCCEEEEeCC
Confidence 2 36889999885422 122334455567777766654
No 251
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.68 E-value=7.6e-09 Score=81.29 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=36.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF 45 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~ 45 (240)
..++++++|.+++| ..++|+|+||||||||++.|+|...+
T Consensus 33 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 33 HRTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp SCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 35899999999999 99999999999999999999998653
No 252
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.67 E-value=5.9e-09 Score=85.08 Aligned_cols=42 Identities=29% Similarity=0.259 Sum_probs=38.3
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++++++|++++| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 15 ~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 56 (348)
T 3d31_A 15 SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSGR 56 (348)
T ss_dssp EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEEE
T ss_pred EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCCcE
Confidence 789999999999 899999999999999999999987766553
No 253
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.65 E-value=5.8e-09 Score=82.03 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=37.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|+++ | ..++|+|+||||||||++.|+|.. +.+|.
T Consensus 18 ~~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~ 59 (263)
T 2pjz_A 18 RFSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59 (263)
T ss_dssp EEEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEEE
T ss_pred ceeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCcE
Confidence 468899999999 9 999999999999999999999987 66554
No 254
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.64 E-value=1.1e-08 Score=78.18 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..+|+++|++|+|||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999999999864
No 255
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.61 E-value=1.4e-08 Score=79.66 Aligned_cols=68 Identities=12% Similarity=-0.045 Sum_probs=39.4
Q ss_pred cEEEEEeCCCCCCCCCCC--------cCCCceEEEEEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGS--------EFDEIHAALVVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~--------~~~~~~~~l~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+.+|||||+.+..... .... +++++++|+....+..+.. .+....... .....|+++|+||+|...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEecccccc
Confidence 368899999987643211 1134 7888999887555554422 111111111 111256899999999654
No 256
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.61 E-value=1.4e-08 Score=84.01 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=37.7
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
|+..++++++|++++| ..++|+|+||||||||+++|+|...
T Consensus 32 ~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 32 GGNAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp SSCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCeEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3467899999999999 9999999999999999999999865
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.60 E-value=4.1e-08 Score=78.85 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----CcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----GVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
..++++|+||+|||||+|+|+ ...+.++.... |...+........ ....+++||||+..+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~--~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPF--GKGSFVGDTPGFSKV 229 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEE--TTTEEEESSCCCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEc--CCCcEEEECcCcCcC
Confidence 789999999999999999999 76666655432 1111111111111 234579999998754
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.59 E-value=1.4e-08 Score=77.69 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=24.6
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..+++++|.+++| ..++|+||||||||||++.|+|..
T Consensus 11 ~~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 3678999999999 899999999999999999999865
No 259
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.59 E-value=2e-08 Score=78.23 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=24.7
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
|+..++++++|+++++ ..|+|+|++|||||||++.|.|.
T Consensus 10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------CCS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHH
Confidence 5667899999999999 99999999999999999999874
No 260
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.57 E-value=1.5e-07 Score=76.00 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=52.0
Q ss_pred EEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC-------CCCCHHH-HHHHHHHHHHhCCC--cCC
Q 036363 58 CEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR-------SRFSQEE-EATLHSLQTLFGKN--CFD 125 (240)
Q Consensus 58 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~-------~~~~~~~-~~~l~~l~~~~~~~--~~~ 125 (240)
........ ++..+.+|||.|...+...+.. .+++++++|++++ +.-+... ...+.++...+... ...
T Consensus 157 i~~~~~~~-~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 157 IIEYPFDL-QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEEe-eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 33444455 6778999999999888777766 9999999999765 1111111 22333334333321 236
Q ss_pred eEEEEEeCCCCC
Q 036363 126 YMIVVFSGRDEL 137 (240)
Q Consensus 126 ~~i~v~~~~D~~ 137 (240)
|+++++||+|..
T Consensus 236 ~iiL~~NK~DL~ 247 (327)
T 3ohm_A 236 SVILFLNKKDLL 247 (327)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEECchhh
Confidence 899999999954
No 261
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.54 E-value=1.2e-07 Score=77.69 Aligned_cols=76 Identities=7% Similarity=0.082 Sum_probs=51.7
Q ss_pred EEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC----------CCHHHHHHHHHHHHHhCCC--cC
Q 036363 59 EMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR----------FSQEEEATLHSLQTLFGKN--CF 124 (240)
Q Consensus 59 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~----------~~~~~~~~l~~l~~~~~~~--~~ 124 (240)
....+.+ ++..+.+|||+|...+...+.. .+++++|+|+++++. -+.. ..+.++...+... ..
T Consensus 184 ~~~~~~~-~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~--e~~~~~~~i~~~~~~~~ 260 (353)
T 1cip_A 184 VETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMH--ESMKLFDSICNNKWFTD 260 (353)
T ss_dssp EEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHH--HHHHHHHHHHTCGGGTT
T ss_pred EEEEEee-CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHH--HHHHHHHHHHcCccccC
Confidence 3344445 6778999999999888777666 999999999999852 1222 2233333333321 23
Q ss_pred CeEEEEEeCCCCC
Q 036363 125 DYMIVVFSGRDEL 137 (240)
Q Consensus 125 ~~~i~v~~~~D~~ 137 (240)
.|+++++||.|..
T Consensus 261 ~piiLv~NK~DL~ 273 (353)
T 1cip_A 261 TSIILFLNKKDLF 273 (353)
T ss_dssp SEEEEEEECHHHH
T ss_pred CcEEEEEECcCch
Confidence 6899999999954
No 262
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.54 E-value=6.9e-08 Score=77.49 Aligned_cols=136 Identities=14% Similarity=0.071 Sum_probs=75.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CC--Cc---------ceeEEEEEEEE---------------
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS------SS--GV---------TSTCEMHRTVL--------------- 65 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~------~~--~~---------t~~~~~~~~~~--------------- 65 (240)
+...|+++|+||||||||++.|+|...+.++.. .. +. ...+.+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999987543332211 00 00 00011111100
Q ss_pred -eCCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEE
Q 036363 66 -KDGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVV 130 (240)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v 130 (240)
..+....++||+|........-. ..|+.+++++|+..+. .....+..+.+..+ ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEEE
Confidence 01234678999998653221100 4588888899987443 22334444443333 36899
Q ss_pred EeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 131 FSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 131 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
+||.|.... ...+-.+....+.++.++...
T Consensus 254 vTh~d~~a~-------------gg~~l~i~~~~~~pi~~ig~G 283 (304)
T 1rj9_A 254 VTKLDGTAK-------------GGVLIPIVRTLKVPIKFVGVG 283 (304)
T ss_dssp EECTTSSCC-------------CTTHHHHHHHHCCCEEEEECS
T ss_pred EECCccccc-------------ccHHHHHHHHHCCCeEEEeCC
Confidence 999985432 122334555566666666543
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.53 E-value=9.2e-07 Score=74.15 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCCcc--ccCCCCC---------cceeEEEEEEE---------------E
Q 036363 18 GVRTVVLVGHTGNGKSATGNSIL------GRRAFK--SRASSSG---------VTSTCEMHRTV---------------L 65 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~------g~~~~~--~~~~~~~---------~t~~~~~~~~~---------------~ 65 (240)
++..|+++|++|+||||++..|+ |..... ......+ .......+... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34899999999999999999987 332210 0000000 00000000000 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363 66 -KDGQVVNVIDTPGLFDFSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE 136 (240)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~ 136 (240)
..+..+.++||||........-. ..+|.+++|+|+..+. ........+.+. .+...+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~-----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEA-----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHS-----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhh-----CCCeEEEEECCCC
Confidence 02367889999997654321111 5678999999997432 222333333221 2446799999995
Q ss_pred C
Q 036363 137 L 137 (240)
Q Consensus 137 ~ 137 (240)
.
T Consensus 252 ~ 252 (443)
T 3dm5_A 252 S 252 (443)
T ss_dssp C
T ss_pred c
Confidence 4
No 264
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.53 E-value=3.1e-07 Score=76.89 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC------CCCcc-c-cCC-------------CCCcceeEEEEE----------E-EE-
Q 036363 19 VRTVVLVGHTGNGKSATGNSILG------RRAFK-S-RAS-------------SSGVTSTCEMHR----------T-VL- 65 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g------~~~~~-~-~~~-------------~~~~t~~~~~~~----------~-~~- 65 (240)
+..|+++|++|+||||++..|+. ....- . ... ..+......... . ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 48999999999999999999873 22100 0 000 000000000000 0 00
Q ss_pred eCCcEEEEEeCCCCCC--CCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363 66 KDGQVVNVIDTPGLFD--FSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRD 135 (240)
Q Consensus 66 ~~~~~~~l~DtpG~~~--~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D 135 (240)
..+..+.++||||... .....-. ..++.+++|+|+.... ........+.+.+ ....+|+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~-----~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQAS-----PIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHC-----SSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhccc-----CCcEEEEeccc
Confidence 0255788999999765 2211101 4568899999997432 2233334443332 34789999999
Q ss_pred CC
Q 036363 136 EL 137 (240)
Q Consensus 136 ~~ 137 (240)
..
T Consensus 250 ~~ 251 (433)
T 3kl4_A 250 GT 251 (433)
T ss_dssp GC
T ss_pred cc
Confidence 44
No 265
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.50 E-value=4e-08 Score=78.93 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
..++++|+||+|||||+|+|+|...+.++.... + .|.... ... -....+++|+||+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCcc
Confidence 789999999999999999999987766655432 1 111111 111 1234579999998765
No 266
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.50 E-value=6.5e-08 Score=78.39 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-c----------------ceeEEEEEEEE----------------e
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG-V----------------TSTCEMHRTVL----------------K 66 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~----------------t~~~~~~~~~~----------------~ 66 (240)
..++++|+||||||||++.|+|...+.++..... . .....+..... .
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 8999999999999999999997644333211000 0 00000110000 0
Q ss_pred CCcEEEEEeCCCCCCCCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 67 DGQVVNVIDTPGLFDFSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
.+..+.++||+|.......... ..+|-.++++|+..+. .....++.+.+.+ ...++++||.|...
T Consensus 210 ~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~-----~it~iilTKlD~~a 282 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAV-----KIDGIILTKLDADA 282 (328)
T ss_dssp HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHS-----CCCEEEEECGGGCS
T ss_pred ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhc-----CCCEEEEeCcCCcc
Confidence 1235678999998654332111 4577888899877442 2233334443332 23689999999532
Q ss_pred CCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363 139 ANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK 173 (240)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (240)
.. ..+..++...+.++.++...
T Consensus 283 ~~-------------G~~l~~~~~~~~pi~~i~~G 304 (328)
T 3e70_C 283 RG-------------GAALSISYVIDAPILFVGVG 304 (328)
T ss_dssp CC-------------HHHHHHHHHHTCCEEEEECS
T ss_pred ch-------------hHHHHHHHHHCCCEEEEeCC
Confidence 21 12334455566676666644
No 267
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.50 E-value=4.2e-08 Score=76.12 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=34.8
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++++++|++++ ..++|+|+||||||||+++|+|...+.+|.
T Consensus 14 ~l~~isl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 54 (240)
T 2onk_A 14 FRLNVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKPDRGE 54 (240)
T ss_dssp EEEEEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEeeeEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 37889999887 489999999999999999999987665543
No 268
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.45 E-value=2.5e-08 Score=94.40 Aligned_cols=44 Identities=30% Similarity=0.256 Sum_probs=39.1
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+++| ..++|+|+||||||||++.|+|...+.+|.
T Consensus 403 ~~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~ 446 (1284)
T 3g5u_A 403 VQILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446 (1284)
T ss_dssp CCSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred CcceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 35899999999999 999999999999999999999987665543
No 269
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.45 E-value=7.2e-07 Score=78.10 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=35.1
Q ss_pred cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
++.++|.+.+| ..++|+|+||+|||||++.|+|...+.+|..
T Consensus 372 l~~~~~~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 372 LEVEPGEIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred EEecccccCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 44556667888 8999999999999999999999887766654
No 270
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.45 E-value=2.1e-07 Score=75.47 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=50.4
Q ss_pred EEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC----------CCCCHHH-HHHHHHHHHHhCCCcCC
Q 036363 59 EMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR----------SRFSQEE-EATLHSLQTLFGKNCFD 125 (240)
Q Consensus 59 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~----------~~~~~~~-~~~l~~l~~~~~~~~~~ 125 (240)
....... ++..+.+|||+|...+...+.. .+++++|+|++++ +.-+..+ ..++..+...- .....
T Consensus 152 ~~~~~~~-~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-~~~~~ 229 (340)
T 4fid_A 152 HEYDFVV-KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-FLKGA 229 (340)
T ss_dssp EEEEEES-SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-GGTTS
T ss_pred EEEEEEe-eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-ccCCC
Confidence 3344444 6778999999999877665555 8999999999997 2222222 33444443311 11236
Q ss_pred eEEEEEeCCCCC
Q 036363 126 YMIVVFSGRDEL 137 (240)
Q Consensus 126 ~~i~v~~~~D~~ 137 (240)
|+++++||+|..
T Consensus 230 piiLv~NK~DL~ 241 (340)
T 4fid_A 230 VKLIFLNKMDLF 241 (340)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEECchhh
Confidence 899999999954
No 271
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.44 E-value=8e-08 Score=84.02 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=39.4
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|++++| ..++++|+||||||||++.|+|...+.+|.
T Consensus 356 ~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 399 (582)
T 3b60_A 356 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEGH 399 (582)
T ss_dssp CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence 56899999999999 999999999999999999999987665543
No 272
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.44 E-value=4e-08 Score=78.66 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=33.1
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
++++++|.+++| ..++|+|+||+|||||++.|+|..
T Consensus 115 vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence 578899999999 999999999999999999999753
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.44 E-value=7.5e-08 Score=70.75 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=27.8
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
+++|.+++| ..++++|+||||||||++.+.+
T Consensus 1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESS--EEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCC--EEEEEECCCCCCHHHHHHHHcc
Confidence 578899999 9999999999999999997653
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.44 E-value=8.2e-08 Score=78.44 Aligned_cols=59 Identities=31% Similarity=0.534 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCC--C----cceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRA-FKSRASSS--G----VTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~--~----~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (240)
..++|+|+||+|||||+|+|+|... +.++.... + .|..... ..+ . ....++||||+.++
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i--~~v-~-q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL--YHF-P-HGGDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE--EEC-T-TSCEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE--EEE-C-CCCEecCcccHHHh
Confidence 6999999999999999999999876 55554322 1 1111111 112 1 22357899998775
No 275
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.42 E-value=1.2e-07 Score=79.74 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=63.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC------c--cccCC--------------------CCC-cceeE-EE--EEE-
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRRA------F--KSRAS--------------------SSG-VTSTC-EM--HRT- 63 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~------~--~~~~~--------------------~~~-~t~~~-~~--~~~- 63 (240)
+.+..|+++|++|+||||+++.|++... . ..... ..+ .+... .. ...
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~ 176 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME 176 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence 4447899999999999999999986321 0 00000 000 00000 00 000
Q ss_pred EEeCCcEEEEEeCCCCCCCCCCC--------cCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcC-CeEEEEEeCC
Q 036363 64 VLKDGQVVNVIDTPGLFDFSAGS--------EFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCF-DYMIVVFSGR 134 (240)
Q Consensus 64 ~~~~~~~~~l~DtpG~~~~~~~~--------~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~i~v~~~~ 134 (240)
.+ .+..+.++||||........ ....+|.+++|+++..+. . .+..+ ..|... . +...+|+||+
T Consensus 177 ~~-~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~---~~~~~-~~~~~~-~~~i~gvVlnK~ 248 (432)
T 2v3c_C 177 KF-KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q---AGIQA-KAFKEA-VGEIGSIIVTKL 248 (432)
T ss_dssp TT-SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G---HHHHH-HHHHTT-SCSCEEEEEECS
T ss_pred Hh-hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H---HHHHH-HHHhhc-ccCCeEEEEeCC
Confidence 01 35578899999987531100 014689999999987443 2 22222 222222 2 3488999999
Q ss_pred CCCC
Q 036363 135 DELE 138 (240)
Q Consensus 135 D~~~ 138 (240)
|...
T Consensus 249 D~~~ 252 (432)
T 2v3c_C 249 DGSA 252 (432)
T ss_dssp SSCS
T ss_pred CCcc
Confidence 9643
No 276
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.41 E-value=2e-07 Score=80.60 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=36.2
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.+++ .+.+| ..++|+|+||||||||+++|+|...+.+|.
T Consensus 37 ~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 37 VLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 677888 88999 999999999999999999999987666554
No 277
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.40 E-value=1.1e-07 Score=72.04 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=24.5
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+.++.+ .++.+| ..++|+|+||||||||+++|+|..
T Consensus 9 ~~~~~~--~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 9 KPTARG--QPAAVG--RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ------------CC--CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcCCCC--CCCCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 345555 688888 899999999999999999999865
No 278
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.38 E-value=7.7e-08 Score=84.36 Aligned_cols=43 Identities=33% Similarity=0.353 Sum_probs=38.7
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|++++| ..++++|+||||||||++.|+|...+.+|.
T Consensus 358 ~vl~~isl~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 400 (595)
T 2yl4_A 358 PIFQDFSLSIPSG--SVTALVGPSGSGKSTVLSLLLRLYDPASGT 400 (595)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSSTHHHHHHTTSSCCSEEE
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 5889999999999 999999999999999999999987665543
No 279
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.37 E-value=8.7e-08 Score=73.88 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=22.4
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh-CCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL-GRR 43 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~-g~~ 43 (240)
+..++++|.+++| ..++|+|+||||||||++.|+ +..
T Consensus 15 ~~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4667899999999 899999999999999999999 864
No 280
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.36 E-value=3.2e-08 Score=93.91 Aligned_cols=45 Identities=27% Similarity=0.253 Sum_probs=39.9
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+..++++++|.+++| ..++|||++|||||||++.|+|...+.+|.
T Consensus 430 ~~~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~~~G~ 474 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDVLKGK 474 (1321)
T ss_dssp TSCSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCCSEEE
T ss_pred CCceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhccccccccCc
Confidence 346899999999999 999999999999999999999987665554
No 281
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.36 E-value=9.6e-08 Score=90.45 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=38.9
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.++++++|.+++| .+++|+|+||+|||||++.|+|...+.+|.
T Consensus 1047 ~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp CSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 5899999999999 999999999999999999999987665543
No 282
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.34 E-value=3.5e-07 Score=80.05 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=36.3
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
++.+++ .+.+| ..++|+|+||+|||||++.|+|...+.+|.
T Consensus 107 ~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 107 VLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred eeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 677888 88899 999999999999999999999987766655
No 283
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.33 E-value=1.1e-07 Score=86.76 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=39.2
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
+.++++++|.+..| .+++|+|+||+|||||++.|+|...+.+|.
T Consensus 686 ~~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P~sG~ 729 (986)
T 2iw3_A 686 KPQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLPTSGE 729 (986)
T ss_dssp SCSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCCSEEE
T ss_pred ceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 46889999999999 999999999999999999999987665543
No 284
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.31 E-value=5.6e-07 Score=75.61 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..+...|+|+|+.++|||||+|.|+|.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345678999999999999999999864
No 285
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.26 E-value=8.4e-07 Score=70.94 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=64.8
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc------cCCCC-Ccc----------eeEEEEEE---------
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS------RASSS-GVT----------STCEMHRT--------- 63 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~------~~~~~-~~t----------~~~~~~~~--------- 63 (240)
+++... + ..|+++|++|+||||++..|++...... +.... +.. ........
T Consensus 92 i~~~~~-~--~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~ 168 (297)
T 1j8m_F 92 VIPDKI-P--YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGI 168 (297)
T ss_dssp CSCSSS-S--EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHH
T ss_pred cccCCC-C--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHH
Confidence 666654 4 8999999999999999999874321110 00000 000 00000000
Q ss_pred ------EEe-CCcEEEEEeCCCCCC--CCCC-C-------cCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCe
Q 036363 64 ------VLK-DGQVVNVIDTPGLFD--FSAG-S-------EFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDY 126 (240)
Q Consensus 64 ------~~~-~~~~~~l~DtpG~~~--~~~~-~-------~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 126 (240)
... .+..+.++||||... .... . ....+|.+++|+++... .......+.+. .. .+.
T Consensus 169 ~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~----~~-~~i 241 (297)
T 1j8m_F 169 AKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFN----QA-SKI 241 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHH----HT-CTT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHH----hh-CCC
Confidence 000 345789999999876 2111 0 11567889999998632 22223333222 11 234
Q ss_pred EEEEEeCCCCC
Q 036363 127 MIVVFSGRDEL 137 (240)
Q Consensus 127 ~i~v~~~~D~~ 137 (240)
..+|+||+|..
T Consensus 242 ~gvVlnk~D~~ 252 (297)
T 1j8m_F 242 GTIIITKMDGT 252 (297)
T ss_dssp EEEEEECGGGC
T ss_pred CEEEEeCCCCC
Confidence 77899999943
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.23 E-value=5e-07 Score=68.04 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=24.3
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+...+| ..++|+|+||||||||++.|+|..
T Consensus 2 ~~m~~g--~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 2 NAMNKA--NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ---CCC--CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcCCCC--cEEEEECcCCCCHHHHHHHHHhhC
Confidence 445667 799999999999999999999864
No 287
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.23 E-value=8.1e-08 Score=91.18 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=39.1
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
..++++++|.+++| .+|+|||++|||||||++.|++...+.+|.
T Consensus 1092 ~~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp SCSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred CccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence 35899999999999 999999999999999999999987665543
No 288
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.21 E-value=5.9e-07 Score=77.68 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=35.6
Q ss_pred cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363 7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS 51 (240)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~ 51 (240)
++.++|.+.+| ..++|+|+||+|||||+++|+|...+.+|...
T Consensus 302 l~~~~~~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 344 (538)
T 1yqt_A 302 LEVEPGEIKKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE 344 (538)
T ss_dssp EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred EEeCccccCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 44556667888 89999999999999999999998877666543
No 289
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.20 E-value=1.2e-06 Score=75.60 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=34.1
Q ss_pred ccCCccccCC-CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 6 IDDDCELTSP-SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 6 ~~~~~~~~~~-~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
.+....++.+ +| ..++|+|+||||||||+++|+|...+..|..
T Consensus 13 ~f~l~~l~~~~~G--ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 13 GFKLFGLPTPKNN--TILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp SCEEECCCCCCTT--EEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred ceeecCCCCCCCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 3455566666 46 8999999999999999999999877666543
No 290
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.19 E-value=2.8e-07 Score=84.13 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.4
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
|+..++++++|.+.+| .+++|+|+||+|||||+++|+|.
T Consensus 446 g~~~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCEEeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 4556899999999999 99999999999999999999953
No 291
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.19 E-value=3.1e-06 Score=77.35 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHH
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSI 39 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l 39 (240)
+..++++++|.+..| ..++|+||||+|||||++++
T Consensus 648 ~~~v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCCEEEEEETTTB--CEEEEECCTTSSHHHHHHHH
T ss_pred ceeecccceeecCCC--eEEEEECCCCCCHHHHHHHH
Confidence 456788999999988 89999999999999999998
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.19 E-value=5.3e-07 Score=70.77 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=30.5
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF 45 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~ 45 (240)
.++++++ +.+| ..++|+|+||||||||++.|+|...+
T Consensus 15 ~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 15 DKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp THHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCC
Confidence 4556666 6777 89999999999999999999986543
No 293
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.18 E-value=2.5e-07 Score=76.14 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS 47 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~ 47 (240)
+++++.+.+| ..++|+|+||||||||+++|++...+..
T Consensus 166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 6788888899 8999999999999999999999865443
No 294
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.17 E-value=5.7e-07 Score=76.24 Aligned_cols=44 Identities=16% Similarity=-0.048 Sum_probs=36.7
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
..++++++|.+++ ..++|+|+||||||||+++|+|...+.+|..
T Consensus 17 ~~~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 60 (483)
T 3euj_A 17 WNGFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60 (483)
T ss_dssp ETTEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred cccccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 3567889999988 5899999999999999999999766655543
No 295
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.16 E-value=7.9e-07 Score=76.78 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
...++.+.+| ..++|+|+||||||||+++|+|...+.+|..
T Consensus 285 ~~~~~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 285 VVDNGEAKEG--EIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp EECCEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred EeccceECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3345667888 8999999999999999999999887766654
No 296
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.16 E-value=2.5e-06 Score=65.20 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..+|+++|.+|+|||||++.++..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999999999865
No 297
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.15 E-value=2e-06 Score=78.38 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=33.7
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
+..++++++|.+..| ..++|+||||+|||||++++.+
T Consensus 659 ~~~V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 659 DQYVPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSSCCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHH
T ss_pred CceecccccccCCCC--eEEEEECCCCCchHHHHHHHHH
Confidence 467889999999999 8999999999999999999864
No 298
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.15 E-value=3e-07 Score=75.11 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=35.1
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF 45 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~ 45 (240)
+..+++++ |++.+| .+++|+|+||+|||||++.|+|...+
T Consensus 58 g~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 58 GVRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp SCHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44577888 999999 99999999999999999999997543
No 299
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.14 E-value=1.9e-07 Score=75.92 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=33.9
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS 47 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~ 47 (240)
+++++++.+.+| ..++|+|+||||||||+++|+|...+..
T Consensus 160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~ 199 (330)
T 2pt7_A 160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEE 199 (330)
T ss_dssp HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 456678888888 8999999999999999999999865443
No 300
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.13 E-value=5.5e-07 Score=75.83 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=35.8
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFK 46 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~ 46 (240)
+..+++++ |++.+| .+++|+|+||+|||||++.|+|...+.
T Consensus 144 g~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 144 GVRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp SCHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34578888 999999 999999999999999999999976543
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.10 E-value=5.7e-07 Score=68.15 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=28.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
.+| ..++|+|+||||||||+++|+|. .+.+|..
T Consensus 20 ~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 20 DTN--TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHC--SEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred cCC--CEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 456 79999999999999999999998 6666554
No 302
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.4e-06 Score=76.20 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=36.7
Q ss_pred ccCCccccCCCCCc---eEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363 6 IDDDCELTSPSNGV---RTVVLVGHTGNGKSATGNSILGRRAFKSRA 49 (240)
Q Consensus 6 ~~~~~~~~~~~~~~---~~i~lvG~~g~GKSTlin~l~g~~~~~~~~ 49 (240)
.+++++|.+.+|.. ..++|+|+||+|||||+++|+|...+.+|.
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 46778888887732 579999999999999999999998777664
No 303
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.09 E-value=2.4e-06 Score=63.51 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.7
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.+++| ..|+|+|+||||||||++.|++.
T Consensus 5 ~i~~g--~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGG--NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTT--EEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCC--eEEEEECCCCCCHHHHHHHHHhc
Confidence 45667 89999999999999999999986
No 304
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.08 E-value=5.5e-07 Score=76.28 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=33.5
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
+++|.+..| .+++|+|+||||||||+++|+|...+.++
T Consensus 130 ~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 130 KIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred cCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 578888999 89999999999999999999998765554
No 305
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.08 E-value=1.1e-06 Score=66.13 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..++|+||||||||||++.|+|..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999999853
No 306
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=2e-06 Score=64.62 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
....++++|.+.++ ..|+|+|++||||||+.+.|..
T Consensus 12 ~~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 12 DLGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ------------CC--CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHH
Confidence 45678999999988 8999999999999999999974
No 307
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.08 E-value=1.4e-06 Score=64.30 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+++|+|+||+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 308
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.4e-06 Score=73.78 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=30.9
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS 50 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~ 50 (240)
.+.+| ..++|+|+||+|||||+++|+|...+.+|..
T Consensus 99 ~~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 99 TPRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 45667 8999999999999999999999887766654
No 309
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.06 E-value=5.7e-06 Score=69.53 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=62.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-------CCCCccccCCC--CCc---------ceeEEEEEE---------------
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSIL-------GRRAFKSRASS--SGV---------TSTCEMHRT--------------- 63 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~-------g~~~~~~~~~~--~~~---------t~~~~~~~~--------------- 63 (240)
+++..|+++|++|+||||+...|+ |....-....+ .+. .........
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 445899999999999999999887 44321100000 000 000000000
Q ss_pred EEe-CCcEEEEEeCCCCCCCCCCCc--------CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363 64 VLK-DGQVVNVIDTPGLFDFSAGSE--------FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR 134 (240)
Q Consensus 64 ~~~-~~~~~~l~DtpG~~~~~~~~~--------~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~ 134 (240)
... .+..+.|+||||......... ...++.+++|+++....+. ......+... .+..-+|+||+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~--~~~~~~f~~~-----l~i~gvVlnK~ 250 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA--ANTAKAFNEA-----LPLTGVVLTKV 250 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH--HHHHHHHHHH-----SCCCCEEEECT
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH--HHHHHHHhcc-----CCCeEEEEecC
Confidence 000 356789999999765432111 0578889999998744222 2222222221 12245789999
Q ss_pred CCC
Q 036363 135 DEL 137 (240)
Q Consensus 135 D~~ 137 (240)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 953
No 310
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.05 E-value=1.9e-06 Score=65.85 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=24.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
.++| ..++|+||||||||||++.|+|...
T Consensus 13 ~~~G--~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQG--TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CC--CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4566 8999999999999999999999764
No 311
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.05 E-value=2.4e-06 Score=71.39 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=25.2
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.++++. ++ ..|+++|++|+||||++..|++.
T Consensus 91 ~~i~l~--~~--~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp CCCCCC--SS--EEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccCC--CC--eEEEEECCCCCCHHHHHHHHHHH
Confidence 456665 44 79999999999999999998754
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.04 E-value=1.2e-06 Score=65.12 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
..++|+||||||||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999998654
No 313
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.02 E-value=2e-06 Score=70.92 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=32.5
Q ss_pred cCCccccCCC--CCceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363 7 DDDCELTSPS--NGVRTVVLVGHTGNGKSATGNSILGRRAFK 46 (240)
Q Consensus 7 ~~~~~~~~~~--~~~~~i~lvG~~g~GKSTlin~l~g~~~~~ 46 (240)
...+++.+.+ + .+++|+|+||||||||++.|+|...+.
T Consensus 158 ~~~v~~~v~~~lg--~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 158 WKFIPKEARPFFA--KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGSCTTTGGGTC--EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hhhCCHHHHHhhh--CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567888888 8 999999999999999999999975443
No 314
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.01 E-value=2.6e-06 Score=64.41 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..++ ..|+|+|++|||||||++.|.|..
T Consensus 3 ~~~~--~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKP--FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CC--EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCc--EEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445 899999999999999999999853
No 315
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.01 E-value=2.1e-06 Score=76.32 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=29.2
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHH
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATG 36 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTli 36 (240)
..++++++|++++| ..++|+|+||||||||+
T Consensus 31 ~~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence 46799999999999 99999999999999997
No 316
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.00 E-value=1.5e-06 Score=77.23 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.3
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
.++++++|++++| ..++|+|+||||||||++.|+
T Consensus 336 ~~L~~vsl~I~~G--e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCC--CEEEEEeeCCCCHHHHHHHHH
Confidence 4689999999999 999999999999999998764
No 317
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.98 E-value=3.3e-06 Score=63.52 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=24.6
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
|++.+| ..|+|+|++||||||+++.|.+..
T Consensus 1 m~i~~g--~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKG--LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCC--CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCC--CEEEEECCCCCCHHHHHHHHHHhh
Confidence 345667 899999999999999999998875
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.96 E-value=4.8e-06 Score=67.02 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=26.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRAF 45 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~ 45 (240)
+..| ..|+|+|+||||||||++.|.|...+
T Consensus 87 ~~~g--~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVP--FIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCC--EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCC--EEEEEECCCCchHHHHHHHHHhhccc
Confidence 5666 99999999999999999999986543
No 319
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=3.7e-06 Score=62.08 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..++|+|+||||||||++.|++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 789999999999999999999854
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.95 E-value=3.6e-06 Score=63.68 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
.++ ..|+|+|+||||||||++.|+|...
T Consensus 20 ~~g--~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGR--QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSC--EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCC--eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445 8999999999999999999998653
No 321
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.95 E-value=4.3e-06 Score=62.55 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=24.8
Q ss_pred cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+++...+ ..|+|+||+|+|||||++.|++..
T Consensus 13 ~~~~~~g--~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGR--KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSC--CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCC--CEEEEECcCCCCHHHHHHHHHhhC
Confidence 5555667 899999999999999999998754
No 322
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.92 E-value=5.1e-05 Score=63.60 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=67.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh-------C----------CCCccccCCCCCcceeEEEEE----EEEeCC--cEEE
Q 036363 16 SNGVRTVVLVGHTGNGKSATGNSIL-------G----------RRAFKSRASSSGVTSTCEMHR----TVLKDG--QVVN 72 (240)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTlin~l~-------g----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~ 72 (240)
..+...|+|+|+.++|||+|+|.|+ | ...|..+....++|....... ...+.+ ..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 4567899999999999999999765 2 123333333344454444322 111122 3688
Q ss_pred EEeCCCCCCCCCCCcC---------CCceEEEEEEECCCCCCHHHHHHHHHHHH---HhC----CCcCCeEEEEEeCCC
Q 036363 73 VIDTPGLFDFSAGSEF---------DEIHAALVVFSVRSRFSQEEEATLHSLQT---LFG----KNCFDYMIVVFSGRD 135 (240)
Q Consensus 73 l~DtpG~~~~~~~~~~---------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~---~~~----~~~~~~~i~v~~~~D 135 (240)
++||.|+.+....... .-.+.+||=. ...+...+...|..+.+ ... ....+.++.++--+-
T Consensus 144 llDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~--~~~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvRDf~ 220 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNL--SQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWS 220 (457)
T ss_dssp EEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEE--ESSCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEETCC
T ss_pred EEeccCCCCcccCccccHHHHHHHHHHhhheeecc--cccCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEecCC
Confidence 9999999887654222 2334445443 33566776666655443 222 122345666655443
No 323
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.92 E-value=2.9e-06 Score=67.75 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=34.3
Q ss_pred CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
...++++++.+++| ..++|+|+||+|||||++.|++...
T Consensus 22 ~~~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 22 CTGINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTHHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45678889999999 8999999999999999999987644
No 324
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.91 E-value=1.3e-06 Score=74.95 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=31.9
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFK 46 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~ 46 (240)
+++++++.+..+ ..++|+|+||||||||+++|+|...+.
T Consensus 249 ~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 249 VLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 345567777788 779999999999999999999976543
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.89 E-value=5.5e-06 Score=62.21 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=22.4
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+...++ ..|+|+|++||||||+++.|.+.
T Consensus 24 m~~~~g--~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 24 MTGEPT--RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ----CC--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCC--cEEEEECCCCCCHHHHHHHHHHh
Confidence 344455 89999999999999999999764
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.89 E-value=1.1e-06 Score=68.37 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=32.8
Q ss_pred CCCccCCccccCCC---CCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 3 GSRIDDDCELTSPS---NGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
+..++++++|.+.+ + ..|+|+|++||||||+.+.|.+
T Consensus 31 ~~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999998 8 8999999999999999999975
No 327
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.87 E-value=3.4e-06 Score=72.85 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=34.7
Q ss_pred CCCCccCCccc-cCCCCCceEEEEEcCCCCcHHHHHHH--HhCCC
Q 036363 2 GGSRIDDDCEL-TSPSNGVRTVVLVGHTGNGKSATGNS--ILGRR 43 (240)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~i~lvG~~g~GKSTlin~--l~g~~ 43 (240)
++..+++++++ .+++| ..++|+|+||||||||++. +.|..
T Consensus 23 ~g~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp CCCTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCchhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35678899999 99999 9999999999999999999 45543
No 328
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.85 E-value=6.4e-06 Score=74.23 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
++..++++++|. +.| ..++|+||||+|||||+++|+|.
T Consensus 593 ~~~~vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCCCCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHH
Confidence 456788999999 777 89999999999999999999875
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.84 E-value=4.6e-06 Score=62.67 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=27.9
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+...+...++ ..|+|+|++||||||+++.|.+..
T Consensus 16 ~~~~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 16 DRQRLLDQKG--CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHHHTSCC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445556677 899999999999999999998754
No 330
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.82 E-value=6.7e-06 Score=61.26 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
.+++++|+||+|||||++.|+|... ..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 5799999999999999999998754 444
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.82 E-value=3.1e-06 Score=68.06 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..+ ..|+|+|++|||||||++.|.|..
T Consensus 78 ~~g--~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIP--YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCC--EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCC--EEEEEECCCCCCHHHHHHHHHHHH
Confidence 445 899999999999999999999853
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.81 E-value=1.2e-05 Score=62.30 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=23.9
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
.+++| ..++|+|+||||||||++.|+
T Consensus 26 gi~~G--~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEG--TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETT--CEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCC--cEEEEEeCCCCCHHHHHHHHH
Confidence 56777 899999999999999999998
No 333
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.79 E-value=7.5e-06 Score=62.58 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=25.4
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
-+++| ..++|+|+||||||||++.|+|..
T Consensus 21 gi~~G--~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQ--AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCC--cEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677 899999999999999999999843
No 334
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.79 E-value=1.2e-05 Score=62.28 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh---CCCCccc
Q 036363 20 RTVVLVGHTGNGKSATGNSIL---GRRAFKS 47 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~~ 47 (240)
..|+|+|+||||||||++.|+ |...+..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~ 58 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSS 58 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 799999999999999999999 8765543
No 335
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.78 E-value=1.3e-05 Score=60.50 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 15 PSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
++| ..|+|+||+|||||||++.|++...
T Consensus 6 ~~g--~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERG--LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCC--CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCC--cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345 7899999999999999999998653
No 336
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.78 E-value=1.1e-05 Score=59.38 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=27.5
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+++++.+.++ ..+|+|+||+|||||+.+|.+..
T Consensus 18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHH
Confidence 5677777776 78999999999999999997643
No 337
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.76 E-value=3.1e-06 Score=66.91 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=29.1
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
.+++++++.++.| ++|+||+|+|||||+++|+|..
T Consensus 34 ~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 34 DQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHc
Confidence 3456677777765 9999999999999999999754
No 338
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=7.9e-06 Score=60.19 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.0
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
.++.+ ..++|+|++|+|||||+++|++...
T Consensus 34 ~~~~g--~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 34 NPEEG--KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CGGGC--CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccCC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44455 7899999999999999999987653
No 339
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.76 E-value=1.3e-05 Score=62.51 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh---CCCCccc
Q 036363 20 RTVVLVGHTGNGKSATGNSIL---GRRAFKS 47 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~~ 47 (240)
..|+|+|++||||||+++.|. |...+.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 799999999999999999999 7655443
No 340
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.72 E-value=1.3e-05 Score=71.80 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=31.3
Q ss_pred CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+..++++++|. | ..++|+||||+|||||+++|+|..
T Consensus 565 ~~~vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 565 TEFVPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCCCCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhh
Confidence 45677888888 6 899999999999999999998854
No 341
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.71 E-value=7.9e-06 Score=67.34 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=30.9
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+++++++.++++ ..++|+|++|+|||||++.|++.
T Consensus 158 ~l~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 158 FLKCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcccccCCC--CEEEEECCCCCCHHHHHHHHHhh
Confidence 456678899999 89999999999999999999863
No 342
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.71 E-value=4.4e-06 Score=69.93 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=29.9
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.++++++|.+.+| .++|+|+||+|||||+++|.+.
T Consensus 49 ~~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 49 ATITQLELELGGG---FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp TTEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHHH
Confidence 3567888998887 8899999999999999998554
No 343
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.69 E-value=1.7e-05 Score=65.45 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.4
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
+.++ ..++|+|+||||||||++.|++...
T Consensus 133 ~~~g--~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKM--GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSS--EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCC--CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5666 8999999999999999999998643
No 344
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.68 E-value=2.3e-05 Score=60.16 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=26.5
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
-.....+| ..|+|+|++||||||+++.|.+.
T Consensus 13 ~~~~~~~g--~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQP--FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCC--EEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCc--eEEEEECCCCCCHHHHHHHHHhc
Confidence 34455667 89999999999999999999875
No 345
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.68 E-value=0.0001 Score=60.40 Aligned_cols=79 Identities=11% Similarity=-0.010 Sum_probs=47.4
Q ss_pred eEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCC----------CCCHHH-HHHHHHHHHHhCCCc
Q 036363 57 TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRS----------RFSQEE-EATLHSLQTLFGKNC 123 (240)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~----------~~~~~~-~~~l~~l~~~~~~~~ 123 (240)
........+ ++..+.+|||+|...+...+.. .+++++|+|+++++ .-+..+ ..++..+...- ...
T Consensus 190 Gi~~~~~~~-~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-~~~ 267 (362)
T 1zcb_A 190 GIHEYDFEI-KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFS 267 (362)
T ss_dssp SEEEEEEEE-TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGT
T ss_pred ceEEEEeee-CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-hhC
Confidence 334444555 6788999999999888777766 89999999999985 222222 23344333210 012
Q ss_pred CCeEEEEEeCCCCC
Q 036363 124 FDYMIVVFSGRDEL 137 (240)
Q Consensus 124 ~~~~i~v~~~~D~~ 137 (240)
..|+++++||.|..
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 36899999999954
No 346
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.66 E-value=2.8e-05 Score=56.82 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999999999875
No 347
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.66 E-value=2.1e-05 Score=58.38 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..++|+|+||||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999985
No 348
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.65 E-value=1.4e-05 Score=65.50 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=25.5
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF 45 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~ 45 (240)
...++ ..|+|+|+||||||||+++|+|...+
T Consensus 119 ~~~~~--g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 119 SDVPR--GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HHCSS--EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred HhCCC--CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 34455 69999999999999999999986543
No 349
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.64 E-value=2.4e-05 Score=72.33 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCCCccCCccccCCC-------CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 2 GGSRIDDDCELTSPS-------NGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 2 ~~~~~~~~~~~~~~~-------~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
++..++++++|.+.. | ..++|+||||+|||||++++ |..
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g--~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKA--YCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CC--CEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CCceEeeeeeeccccccccCCCC--cEEEEECCCCCChHHHHHHH-HHH
Confidence 345688999999876 6 89999999999999999998 654
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.63 E-value=3.6e-05 Score=56.87 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=24.9
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+++|+.+.+ ..|+|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKG--INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence 467777777 89999999999999999998753
No 351
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.62 E-value=0.00011 Score=60.84 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=53.0
Q ss_pred EEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCC----------CCCHHH-HHHHHHHHHHhCCCcC
Q 036363 58 CEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRS----------RFSQEE-EATLHSLQTLFGKNCF 124 (240)
Q Consensus 58 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~----------~~~~~~-~~~l~~l~~~~~~~~~ 124 (240)
.....+.+ ++..+.+|||+|...+...+.. .+++++|+|+++++ .-+..+ ..++..+...- ....
T Consensus 207 i~~~~~~~-~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~ 284 (402)
T 1azs_C 207 IFETKFQV-DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRT 284 (402)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSS
T ss_pred eEEEEeec-CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCC
Confidence 33344555 6788999999999988777666 99999999999985 333332 23333333210 1123
Q ss_pred CeEEEEEeCCCCC
Q 036363 125 DYMIVVFSGRDEL 137 (240)
Q Consensus 125 ~~~i~v~~~~D~~ 137 (240)
.|++||+||+|..
T Consensus 285 ~piiLvgNK~DL~ 297 (402)
T 1azs_C 285 ISVILFLNKQDLL 297 (402)
T ss_dssp CCEEEEEECHHHH
T ss_pred CeEEEEEEChhhh
Confidence 6799999999954
No 352
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.59 E-value=2.5e-05 Score=65.34 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAF 45 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~ 45 (240)
..|+|+|+||||||||+++|+|...+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 78999999999999999999986543
No 353
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.58 E-value=1.7e-05 Score=60.65 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=28.5
Q ss_pred ccCCccc-cCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 6 IDDDCEL-TSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 6 ~~~~~~~-~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.++++.. .+++| ..++|+|+||+|||||++.|++.
T Consensus 11 ~Ld~~~~ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 11 DFDKLIQGGIPQG--FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp HHHGGGTTSEETT--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455554 67778 89999999999999999999854
No 354
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.57 E-value=1.9e-05 Score=61.48 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.3
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
++.++++.++.| ++|+|++|+|||||+++|++..
T Consensus 40 ~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 40 RFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHh
Confidence 345566666654 9999999999999999998754
No 355
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=2.9e-05 Score=56.57 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..|+|+|++||||||+.+.|.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998753
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.52 E-value=8.3e-05 Score=55.92 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=26.2
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
.-..++++ ..|+|+|++||||||+.+.|.+..
T Consensus 14 ~~~~~~~~--~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKT--FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCC--EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCC--eEEEEECCCCCCHHHHHHHHHHhc
Confidence 33445555 899999999999999999999863
No 357
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.52 E-value=2e-05 Score=57.60 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
..++|+|++|||||||++.|++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999998643
No 358
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.52 E-value=2.1e-05 Score=64.68 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=25.4
Q ss_pred cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
..++++.++.| . .+|+|+|||||||++++|+
T Consensus 14 ~~~~~i~~~~g--~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG--I-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE--E-EEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC--e-EEEECCCCCCHHHHHHHHH
Confidence 44567777766 4 6699999999999999987
No 359
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.51 E-value=2.6e-05 Score=61.59 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.4
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
++.++++.++.| ++|+|++|+|||||+++|++..
T Consensus 64 ~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 64 RFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHc
Confidence 345566666654 8999999999999999998754
No 360
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.49 E-value=5.9e-05 Score=60.74 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+.+..|+|+|++|||||||++.|.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999997653
No 361
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.46 E-value=7.5e-05 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 362
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.46 E-value=2.8e-05 Score=71.03 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=31.2
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
..+++++|.++.| ..++|+|+||+|||||++.|+
T Consensus 656 ~~Lk~Vsl~I~~G--eivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 656 HNLRGIDVSFPLG--VLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TTCCSEEEEEESS--SEEEEECSTTSSHHHHHTTTH
T ss_pred ccccCceEEECCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999 999999999999999999864
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.45 E-value=7.8e-05 Score=55.92 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++|||||||++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999999864
No 364
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.44 E-value=6.1e-05 Score=61.69 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=28.8
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
..++++++.+.+| ..+|+|+||+||||++++|.+
T Consensus 15 ~~~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE---EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC---eEEEECCCCCChhHHHHHHHH
Confidence 3456788888776 889999999999999999975
No 365
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.44 E-value=6.3e-05 Score=60.65 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
...++|+|++|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999864
No 366
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.41 E-value=4.7e-05 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..++|+|++|+|||||+++|++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999854
No 367
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.41 E-value=9.3e-05 Score=52.79 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=21.9
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
..+...+ ...+|+|+||+||||++.+|.
T Consensus 17 ~~i~f~~---g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKE---GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCS---EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCC---CeEEEECCCCCCHHHHHHHHH
Confidence 3444444 367899999999999999975
No 368
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.40 E-value=0.00011 Score=59.33 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.+++|...++ ..|+++|++|+||||++..|++.
T Consensus 96 ~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 96 YRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHH
T ss_pred cCccccCCCC--eEEEEECCCCCCHHHHHHHHHHH
Confidence 5677877776 89999999999999999998754
No 369
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.38 E-value=7.4e-05 Score=56.00 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 370
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.38 E-value=9.6e-05 Score=55.50 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..|+|+|++||||||+++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 789999999999999999997643
No 371
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.38 E-value=2.9e-05 Score=70.70 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.2
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
..+++++|.++.| ..++|+|+||+|||||++.|+
T Consensus 638 ~~Lk~Vsl~I~~G--eiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESS--SEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 3689999999999 999999999999999999864
No 372
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.37 E-value=7.9e-05 Score=56.78 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 373
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.37 E-value=0.00015 Score=58.04 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=25.4
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+++....+ ..|+++|++|+||||++..|++..
T Consensus 97 ~~~~~~~~--~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 97 LNVPPEPP--FVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCCSSSC--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcccCCCC--eEEEEEcCCCChHHHHHHHHHHHH
Confidence 34444445 899999999999999999988653
No 374
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.36 E-value=8.9e-06 Score=62.31 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSR 48 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~ 48 (240)
..++|+||||||||||+++|+|...+.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 35789999999999999999997665554
No 375
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.31 E-value=0.00012 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (240)
-|+|+||+|||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
No 376
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.29 E-value=2.1e-05 Score=71.07 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=30.4
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHH-Hh
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNS-IL 40 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~-l~ 40 (240)
.+++++|.++.| ..++|+|+||+|||||++. |+
T Consensus 512 ~L~~vsl~i~~G--eiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 512 NLDNLDVRFPLG--VMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp TEEEEEEEEESS--SEEEEECCTTSSHHHHCCCCCH
T ss_pred ccccceEEEcCC--CEEEEEcCCCcCHHHHHHHHHH
Confidence 578999999999 9999999999999999996 54
No 377
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.28 E-value=0.0001 Score=67.30 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=28.2
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHH
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATG 36 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTli 36 (240)
..+++++|.++.| ..++|+|+||||||||+
T Consensus 598 ~~Lk~Vsl~I~~G--eiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLG--VFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESS--SEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCC--cEEEEEccCCCChhhhH
Confidence 4689999999999 99999999999999997
No 378
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.26 E-value=0.00022 Score=54.66 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=23.7
Q ss_pred CCccccCC---CCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 8 DDCELTSP---SNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 8 ~~~~~~~~---~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
.+.++... .| ..|+|.|++||||||+++.|....
T Consensus 14 ~~~~~~~~~~~~g--~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 14 GTENLYFQSNAMS--AFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp ------CCCCCCC--EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeeEeecCCC--eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444443 55 899999999999999999997643
No 379
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.24 E-value=0.00017 Score=57.27 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+....|+|+|++|||||||++.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344899999999999999999988754
No 380
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.23 E-value=0.00016 Score=52.94 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..++++|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 68999999999999999999875
No 381
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.22 E-value=0.00019 Score=52.03 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 382
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.21 E-value=8.8e-05 Score=56.09 Aligned_cols=27 Identities=11% Similarity=-0.034 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
-+++| ..++|+|++|+|||||+..|++
T Consensus 16 gi~~G--~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPG--VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence 56777 8999999999999999999987
No 383
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.20 E-value=0.00038 Score=56.90 Aligned_cols=68 Identities=9% Similarity=0.016 Sum_probs=46.1
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC----------CCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR----------SRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRD 135 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~----------~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D 135 (240)
..+.+|||+|...+...+.. ++++++++|++++ +.-+..+ ..++..+.... .....|+++|+||+|
T Consensus 183 v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFMLFLNKFD 261 (354)
T ss_dssp -EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEEEEEECHH
T ss_pred eeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEEEEEECcc
Confidence 57899999999988877766 9999999999986 2323332 23333333210 112368999999999
Q ss_pred CC
Q 036363 136 EL 137 (240)
Q Consensus 136 ~~ 137 (240)
..
T Consensus 262 L~ 263 (354)
T 2xtz_A 262 IF 263 (354)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 384
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.17 E-value=0.00019 Score=57.89 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=25.7
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
+.+++.+.+| ..+|+|+||+|||||+.+|..
T Consensus 16 ~~~~l~~~~g---~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 16 RPSLIGFSDR---VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SCEEEECCSS---EEEEECCTTTCSTHHHHHHHH
T ss_pred CCeEEecCCC---cEEEECCCCCcHHHHHHHHHH
Confidence 4556776665 789999999999999999974
No 385
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.17 E-value=0.00017 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998643
No 386
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.15 E-value=0.00014 Score=55.79 Aligned_cols=28 Identities=11% Similarity=0.149 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
-+++| ..++|+|++|+|||||+..|++.
T Consensus 20 gi~~G--~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETG--SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCC--eEEEEECCCCCcHHHHHHHHHHH
Confidence 45667 89999999999999999999983
No 387
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.12 E-value=0.00027 Score=53.08 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=21.9
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
..+...+ ...+|+|+||+||||++.+|.
T Consensus 17 ~~i~f~~---~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE---GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS---EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC---CeEEEEcCCCCCHHHHHHHHH
Confidence 3444444 477899999999999999874
No 388
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.12 E-value=0.0003 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999975
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.10 E-value=0.00036 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999764
No 390
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.10 E-value=0.00029 Score=51.05 Aligned_cols=20 Identities=25% Similarity=0.585 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 036363 20 RTVVLVGHTGNGKSATGNSI 39 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l 39 (240)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 391
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.10 E-value=0.00037 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (240)
...|+|+|++||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 392
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.09 E-value=9e-05 Score=60.56 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=27.8
Q ss_pred cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
.+.+++| ..++|+|++|+|||||++.|++..
T Consensus 125 ~ggi~~G--~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQ--AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCC--eEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678888 999999999999999999999864
No 393
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.09 E-value=0.00046 Score=50.86 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..++ ..|+|+|.+||||||+.+.|....
T Consensus 10 ~~~~--~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKG--IVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCC--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCC--cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445 899999999999999999997643
No 394
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.05 E-value=0.0004 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999873
No 395
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.04 E-value=0.00025 Score=59.62 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=24.8
Q ss_pred ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
+.+..+ ..++|+|+||+|||||+++|.+...
T Consensus 21 ~~~~~~--~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGES--NFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTC--SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCC--CEEEEECCCCCCHHHHHHHHHhhhc
Confidence 334444 6899999999999999999987544
No 396
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.04 E-value=0.00021 Score=56.43 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.1
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
-+++| ..++|+|++|+|||||+..|++.
T Consensus 26 gl~~G--~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAG--TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETT--SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35566 89999999999999999998863
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.02 E-value=0.00023 Score=57.72 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..++|+||+|+|||||++.|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999998754
No 398
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.02 E-value=0.00046 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
....|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3478999999999999999999754
No 399
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.02 E-value=0.00042 Score=55.21 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+++++. .+ ..++++|++|+||||++..|++..
T Consensus 91 ~~i~~~--~~--~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCCC--SS--EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred ceeecC--CC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666 45 899999999999999999987653
No 400
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.02 E-value=0.00031 Score=55.96 Aligned_cols=110 Identities=16% Similarity=0.188 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC-------CC---------------CcceeEEEEE-------EEEeCCcE
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRRAFKSRAS-------SS---------------GVTSTCEMHR-------TVLKDGQV 70 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-------~~---------------~~t~~~~~~~-------~~~~~~~~ 70 (240)
..|+++|++|+||||++..|++......+.. .. +......... ... .+..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~d 184 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYD 184 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCC
Confidence 7999999999999999999875432211110 00 0000000000 001 3457
Q ss_pred EEEEeCCCCCCCCCCCc-----C---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363 71 VNVIDTPGLFDFSAGSE-----F---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL 137 (240)
Q Consensus 71 ~~l~DtpG~~~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~ 137 (240)
+.++||||........- . ..++.+++|++++.. .. .+..+...|.. ....-+|+||.|..
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~---~~~~~~~~~~~--l~~~giVltk~D~~ 252 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YE---DMKHIVKRFSS--VPVNQYIFTKIDET 252 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HH---HHHHHTTTTSS--SCCCEEEEECTTTC
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HH---HHHHHHHHHhc--CCCCEEEEeCCCcc
Confidence 88999999886432110 0 247788888887632 22 23333333331 23355778999954
No 401
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.01 E-value=0.0002 Score=58.24 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=30.1
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+++.+++.+..|....|+|+|++|+||||+.+.|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3455667777886678999999999999999988764
No 402
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.00044 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999754
No 403
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.99 E-value=0.00055 Score=50.53 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999864
No 404
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.99 E-value=0.00042 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999863
No 405
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.98 E-value=0.00043 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.|+|+|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999998753
No 406
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.98 E-value=0.00023 Score=61.60 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
+..| ..|+|+|++|||||||++.|.+...
T Consensus 366 ~~~G--~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQG--FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSC--EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccc--eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4456 8999999999999999999988653
No 407
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.97 E-value=0.0005 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 408
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0034 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.-|+|.||+|+|||+|.+++++.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 78999999999999999999864
No 409
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.94 E-value=0.00042 Score=59.20 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.0
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..+.++++.++.| |+|+|++|+|||||+++|.+..
T Consensus 54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHT
T ss_pred hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHh
Confidence 3456666666654 9999999999999999998753
No 410
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.93 E-value=0.00055 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 036363 20 RTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (240)
..|+|+|++|+||||+.+.|.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 689999999999999999987
No 411
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.92 E-value=0.00056 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 412
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.92 E-value=0.00078 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
....|+|+|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999874
No 413
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.91 E-value=0.00058 Score=53.09 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++|||||||.+.|+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4689999999999999999875
No 414
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.91 E-value=0.00059 Score=49.57 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
...++++|++|+|||||+..|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999864
No 415
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.88 E-value=0.00062 Score=51.30 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=24.2
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
....+ ..|+|+|++|+||||+.+.|.+..
T Consensus 21 ~~~~~--~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 21 RNQRG--LTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HTSSC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCC--CEEEEECCCCCCHHHHHHHHHHHh
Confidence 34556 899999999999999999987643
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.88 E-value=0.00067 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999874
No 417
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.87 E-value=0.00067 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (240)
...|+|+|++||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999964
No 418
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.87 E-value=0.00069 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998863
No 419
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.86 E-value=0.00067 Score=55.73 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=28.4
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
|+.+++.+| .+++|+|++|+|||||++.|.+.
T Consensus 166 D~~~pi~rG--Qr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRG--QRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTT--CEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCC--cEEEEecCCCCChhHHHHHHHHH
Confidence 677888888 89999999999999999988753
No 420
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.86 E-value=0.00062 Score=51.35 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 036363 21 TVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (240)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 421
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.84 E-value=0.00085 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999999864
No 422
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.83 E-value=0.00056 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
.+|+|+|++||||||+.+.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 423
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.82 E-value=0.00074 Score=49.95 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999863
No 424
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.82 E-value=0.00084 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 78999999999999999999764
No 425
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.81 E-value=0.0007 Score=51.08 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 036363 21 TVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (240)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 426
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.80 E-value=0.00088 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999975
No 427
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.79 E-value=0.00056 Score=53.14 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+..|+++|++||||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 389999999999999999998653
No 428
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.79 E-value=0.00082 Score=54.58 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 036363 20 RTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (240)
...+|+|+||+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 366899999999999999874
No 429
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.78 E-value=0.00096 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 7899999999999999999875
No 430
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.76 E-value=9.4e-05 Score=55.36 Aligned_cols=67 Identities=3% Similarity=-0.020 Sum_probs=40.4
Q ss_pred CcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363 68 GQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRD 135 (240)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D 135 (240)
...+.|+|||+............+|.+++++.++ ..+......++.+..........++.+|+|+.+
T Consensus 75 ~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 4578999999866322111116688899999887 444333455555543211122235689999998
No 431
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.75 E-value=0.00037 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.|+|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 432
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0066 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.-|+|.||+|+|||+|.+++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999864
No 433
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.73 E-value=0.0013 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999863
No 434
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.73 E-value=0.00088 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999873
No 435
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.73 E-value=0.001 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999864
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.72 E-value=0.0011 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (240)
+.+|+|+|++||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999999863
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.69 E-value=0.001 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 036363 20 RTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~ 40 (240)
..|+|.|++||||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999997
No 438
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.69 E-value=0.001 Score=49.33 Aligned_cols=22 Identities=18% Similarity=0.570 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 439
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0087 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.-|+|.||+|+|||+|.+++++.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 67999999999999999999864
No 440
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.67 E-value=0.00086 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999863
No 441
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.66 E-value=0.0015 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 036363 17 NGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
+.+..|+|+|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345899999999999999999986
No 442
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.65 E-value=0.0012 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 036363 21 TVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (240)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 443
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.65 E-value=0.0011 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 444
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.65 E-value=0.00072 Score=58.32 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=27.2
Q ss_pred cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
...+++| ..++|+|+||+|||||++.|++...
T Consensus 275 ~g~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 275 GGGFFKD--SIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp TSSEESS--CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3466777 8999999999999999999998643
No 445
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.63 E-value=0.00021 Score=62.70 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=31.4
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA 44 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~ 44 (240)
.+.+.+++.+..+ ..++|+|++|+|||||+++|.+...
T Consensus 48 ~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 48 HAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred hhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3455666777777 7999999999999999999998754
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.62 E-value=0.0013 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++|+||||+.+.|.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999875
No 447
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.62 E-value=0.0048 Score=49.19 Aligned_cols=66 Identities=17% Similarity=0.003 Sum_probs=37.1
Q ss_pred CcEEEEEeCCCCCCCCCC-CcCCCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCe-EEEEEeCCC
Q 036363 68 GQVVNVIDTPGLFDFSAG-SEFDEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDY-MIVVFSGRD 135 (240)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~-~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~i~v~~~~D 135 (240)
...+.|+|||+....... .....+|.+++|+.+. ..+... ...++.+... +.....+ +-+|+|+.+
T Consensus 156 ~yD~ViiD~p~~~~~~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK-SKNYKVRLAGCVANRSR 224 (307)
T ss_dssp SCSEEEEEECCSSCCGGGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT-TTTCCCEEEEEEEESCS
T ss_pred cCCEEEEeCCCccchHHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-hhcCCCceEEEEEecCC
Confidence 357889999876553322 2226788899988765 333332 2334444322 2122233 338899988
No 448
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0067 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.-|.|.||+|+|||+|.+++++.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 57999999999999999999864
No 449
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.61 E-value=0.00082 Score=51.59 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=23.5
Q ss_pred cccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
.--+++| ..++|+|++|+|||||+..++.
T Consensus 17 ~gGl~~G--~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 17 HGGIPER--NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTSEETT--CEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCC--cEEEEECCCCCCHHHHHHHHHH
Confidence 4456677 8999999999999999776653
No 450
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.61 E-value=0.0012 Score=48.61 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 036363 21 TVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (240)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 451
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.61 E-value=0.00089 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 452
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.61 E-value=0.0014 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
.+..|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999865
No 453
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.60 E-value=0.001 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 454
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.60 E-value=0.0014 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.60 E-value=0.0012 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 036363 21 TVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (240)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 456
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.59 E-value=0.001 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..++|+|++|+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 457
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.00021 Score=58.07 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=25.8
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
.++..+..|....++|.||+|+||||+++.+++..
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444455533348999999999999999998753
No 458
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.54 E-value=0.0017 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
....|+|+|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
No 459
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.53 E-value=0.0011 Score=54.61 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=22.6
Q ss_pred CccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
+..+...+| ..+|+|+||+||||++.+|.
T Consensus 18 ~~~i~f~~g---l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 18 NSRIKFEKG---IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEECCSE---EEEEEECTTSSHHHHHHHHH
T ss_pred ceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence 344555454 77899999999999999974
No 460
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.52 E-value=0.0016 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 036363 19 VRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 19 ~~~i~lvG~~g~GKSTlin~l~g 41 (240)
..+|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999853
No 461
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.52 E-value=0.0015 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 036363 21 TVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (240)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.47 E-value=0.0032 Score=52.57 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 18 GVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 18 ~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
....|+++|++||||||+.+.|+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999998753
No 463
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.46 E-value=0.00073 Score=58.16 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=26.6
Q ss_pred ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
.++++++.+.+| ..+|+|+||+|||||+.+|.
T Consensus 50 ~~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 50 TITQLELELGGG---FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp TBSCEEEECCCS---EEEEEESHHHHHHHHTHHHH
T ss_pred ceeeEEEecCCC---eEEEEcCCCCCHHHHHHHHH
Confidence 456677777776 67899999999999999984
No 464
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.45 E-value=0.0016 Score=47.67 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 465
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.43 E-value=0.0019 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 036363 21 TVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+|+|+|++||||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998743
No 466
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.42 E-value=0.0028 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.557 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|.|+|++||||+|....|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 67888999999999999988743
No 467
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.42 E-value=0.00095 Score=57.79 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=25.1
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
+++.. ++ ..++|+||+|+|||||+++|.+..
T Consensus 102 ~~~~~-~g--~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 102 LTKSL-KG--PILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HSSSC-CS--CEEEEESSSSSSHHHHHHHHHHHH
T ss_pred hcccC-CC--CEEEEECCCCCCHHHHHHHHHHhc
Confidence 34444 34 799999999999999999998754
No 468
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.42 E-value=0.0021 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..++|.|++|+|||++++.++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998754
No 469
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.41 E-value=0.0019 Score=51.42 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+..+ ..|+|.|++|+|||+|+++|.+.
T Consensus 46 ~~~~--~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 46 MTPS--KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCC--SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCC--ceEEEECCCCcCHHHHHHHHHHH
Confidence 3444 78999999999999999999864
No 470
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.38 E-value=0.0021 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..+.|.|++|+|||+|+..|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998864
No 471
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.37 E-value=0.0023 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 472
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.35 E-value=0.0016 Score=54.11 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.0
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSIL 40 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~ 40 (240)
-+++| ..++|+|++|+|||||+..|+
T Consensus 174 GI~~G--ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETG--SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETT--SEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCC--cEEEEEcCCCCChHHHHHHHH
Confidence 35566 899999999999999999664
No 473
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.33 E-value=0.011 Score=47.18 Aligned_cols=63 Identities=11% Similarity=-0.030 Sum_probs=42.9
Q ss_pred cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363 69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE 138 (240)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~ 138 (240)
..+.+||| +..+...... ..+|++++|+|++++. +.... .++..+.. ...|+++|+||+|...
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD 129 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence 37899999 5555444433 8999999999999664 55443 33333322 1367999999999554
No 474
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.33 E-value=0.0023 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999853
No 475
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.0014 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..++|+|++|+||||+++.|++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999883
No 476
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.31 E-value=0.0024 Score=47.65 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 036363 21 TVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 21 ~i~lvG~~g~GKSTlin~l~g 41 (240)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999865
No 477
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.28 E-value=0.002 Score=58.43 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=24.9
Q ss_pred cCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
.+.++ ..|+|+|++|+|||||+++|++..
T Consensus 234 ~i~~~--~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 234 GVKPP--RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCC--CEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCC--CeEEEECcCCCCHHHHHHHHHHHc
Confidence 45555 789999999999999999998764
No 478
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.27 E-value=0.0026 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..++|.|++|+|||||++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998754
No 479
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.25 E-value=0.0036 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..|+|+||+|+|||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999998754
No 480
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.25 E-value=0.0027 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998754
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.24 E-value=0.0031 Score=50.35 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+||+|+|||||...|+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 57899999999999999999754
No 482
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.24 E-value=0.0029 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.24 E-value=0.0036 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+||+|+|||||...|+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 67899999999999999999754
No 484
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.24 E-value=0.0029 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++|||||||...|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998754
No 485
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.22 E-value=0.0032 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|+|++|+|||||...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999864
No 486
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.16 E-value=0.0018 Score=55.05 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
.-|+|+|++|+|||+|+++|.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999874
No 487
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.15 E-value=0.0026 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..++|.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999998754
No 488
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.15 E-value=0.0047 Score=49.14 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGRR 43 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~~ 43 (240)
..++|+|++|+|||++++.|.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 589999999999999999998653
No 489
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.14 E-value=0.0026 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|+|.|++||||||+++.|...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999998754
No 490
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.10 E-value=0.0038 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|+||+|+|||||...|+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6789999999999999999874
No 491
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.09 E-value=0.0035 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..++|.|++|+||||+++.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.04 E-value=0.002 Score=51.15 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=17.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 036363 20 RTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g 41 (240)
..|+|.|++||||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 493
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.02 E-value=0.0019 Score=55.17 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=24.8
Q ss_pred ccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363 10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILG 41 (240)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g 41 (240)
+.+.+..+ ..++++|.||+||||++|+|+.
T Consensus 160 v~ldL~~~--pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 160 VVADLAKM--PHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEGGGS--CSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcccC--ceEEEECCCCCCHHHHHHHHHH
Confidence 45555555 7899999999999999999864
No 494
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.00 E-value=0.0043 Score=48.74 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..+.|.|++|+|||+|+++++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999764
No 495
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.98 E-value=0.004 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..+++.||+|+||||++.+|+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999888753
No 496
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.97 E-value=0.0025 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..++|.|++|+||||+++.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999865
No 497
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.92 E-value=0.0026 Score=57.64 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=28.6
Q ss_pred CccCCccccCCCCCceEEEEEcCCCCcHHHHHH
Q 036363 5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGN 37 (240)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin 37 (240)
+-++|+++.+|.+ .-++|.|.+|||||||+.
T Consensus 24 hNLkni~v~iP~~--~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 24 HNLKDISVKVPRD--ALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp TTCCSEEEEEESS--SEEEEESSTTSSHHHHHT
T ss_pred cCCCCeeEEecCC--CEEEEECCCCCCHHHHHH
Confidence 5678999999999 999999999999999984
No 498
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.89 E-value=0.0062 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..|.|.|++|+|||++++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999753
No 499
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.85 E-value=0.0043 Score=50.60 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.0
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363 14 SPSNGVRTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
+++| ..+.|+|++|+|||||+..++..
T Consensus 58 i~~G--~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 58 YPRG--RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EETT--EEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCC--cEEEEECCCCCCHHHHHHHHHHH
Confidence 3456 79999999999999999998754
No 500
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.83 E-value=0.0054 Score=48.65 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 036363 20 RTVVLVGHTGNGKSATGNSILGR 42 (240)
Q Consensus 20 ~~i~lvG~~g~GKSTlin~l~g~ 42 (240)
..+.|.||+|+|||+|.++|+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67888899999999999999754
Done!