Query 036366
Match_columns 84
No_of_seqs 107 out of 1089
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 11:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00081 Sod_Fe_N: Iron/mangan 99.9 3.6E-25 7.9E-30 142.0 4.1 47 27-73 1-47 (82)
2 PLN02471 superoxide dismutase 99.9 4.5E-24 9.8E-29 159.1 6.0 79 1-79 1-82 (231)
3 COG0605 SodA Superoxide dismut 99.9 2.4E-22 5.2E-27 148.3 4.5 56 26-81 2-57 (204)
4 PRK10925 superoxide dismutase; 99.8 1.2E-21 2.6E-26 143.3 4.1 47 26-72 1-47 (206)
5 PLN02184 superoxide dismutase 99.8 5.5E-21 1.2E-25 140.6 3.8 47 25-71 8-54 (212)
6 PRK10543 superoxide dismutase; 99.8 3.1E-20 6.7E-25 134.7 4.8 46 26-71 1-46 (193)
7 PLN02685 iron superoxide dismu 99.8 1.3E-19 2.8E-24 139.9 4.1 46 25-70 44-89 (299)
8 PLN02622 iron superoxide dismu 99.8 1.2E-18 2.6E-23 132.1 5.7 51 21-71 41-91 (261)
9 PTZ00078 Superoxide dismutase 99.7 1.2E-18 2.6E-23 126.4 4.0 42 31-72 1-42 (193)
10 KOG0876 Manganese superoxide d 99.7 5.8E-18 1.3E-22 127.3 6.4 56 22-77 22-77 (234)
11 COG4700 Uncharacterized protei 68.6 5.3 0.00011 30.8 2.7 21 50-70 227-247 (251)
12 PF12759 HTH_Tnp_IS1: InsA C-t 50.8 11 0.00023 22.3 1.4 21 35-55 1-21 (46)
13 PF13894 zf-C2H2_4: C2H2-type 32.2 35 0.00077 15.2 1.4 15 43-57 10-24 (24)
14 PF12013 DUF3505: Protein of u 31.3 27 0.00058 22.5 1.1 15 44-58 95-109 (109)
15 TIGR02118 conserved hypothetic 30.1 51 0.0011 20.7 2.2 22 42-64 10-31 (100)
16 PF07110 EthD: EthD domain; I 29.3 66 0.0014 19.1 2.5 22 42-63 1-22 (95)
17 COG1359 Uncharacterized conser 29.2 43 0.00094 21.2 1.8 41 30-70 45-86 (100)
18 PF13075 DUF3939: Protein of u 27.0 1.2E+02 0.0025 21.7 3.8 32 43-74 60-93 (140)
19 PF13909 zf-H2C2_5: C2H2-type 23.4 87 0.0019 14.6 1.9 12 46-57 12-23 (24)
20 PF04651 Pox_A12: Poxvirus A12 22.7 75 0.0016 23.8 2.2 20 56-75 10-29 (189)
No 1
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.91 E-value=3.6e-25 Score=142.00 Aligned_cols=47 Identities=60% Similarity=0.911 Sum_probs=38.5
Q ss_pred ceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036366 27 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQ 73 (84)
Q Consensus 27 ~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~~~ 73 (84)
.|+||+|||+|+||||+||++||++||+|||++||++||+++++.+.
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~~ 47 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTEL 47 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 48999999999999999999999999999999999999999997643
No 2
>PLN02471 superoxide dismutase [Mn]
Probab=99.90 E-value=4.5e-24 Score=159.13 Aligned_cols=79 Identities=76% Similarity=1.041 Sum_probs=66.9
Q ss_pred CchhhHHHHHhhhhcccc---ccccccccceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 036366 1 MALRSLAIRKAIGLGKSV---GLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK 77 (84)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~~~~~~~ 77 (84)
|.+|.+++|..|..-... ..++++.++|+||+|||+|++|||+||++||++||+|||++||++||++++++.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~ 80 (231)
T PLN02471 1 MALRTLASRKTLGGLKETSSRLLSFRGLQTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEK 80 (231)
T ss_pred CchHhhhhhhhhhhccccchhhhhhcccccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhccc
Confidence 778999999999874333 33477888999999999999999999999999999999999999999999987554333
Q ss_pred CC
Q 036366 78 VD 79 (84)
Q Consensus 78 ~~ 79 (84)
++
T Consensus 81 ~~ 82 (231)
T PLN02471 81 GD 82 (231)
T ss_pred CC
Confidence 33
No 3
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.4e-22 Score=148.29 Aligned_cols=56 Identities=52% Similarity=0.856 Sum_probs=49.7
Q ss_pred cceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCCcC
Q 036366 26 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTS 81 (84)
Q Consensus 26 ~~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~~~~~~~~~~~ 81 (84)
+.|+||+|||+|+||||+||++||++||+||||+||+|||+++++..+.....+++
T Consensus 2 ~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e 57 (204)
T COG0605 2 MAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLE 57 (204)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHH
Confidence 58999999999999999999999999999999999999999999876544444443
No 4
>PRK10925 superoxide dismutase; Provisional
Probab=99.84 E-value=1.2e-21 Score=143.33 Aligned_cols=47 Identities=53% Similarity=0.878 Sum_probs=44.4
Q ss_pred cceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 036366 26 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLF 72 (84)
Q Consensus 26 ~~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~~ 72 (84)
|+|+||+|||+|++|||+||++||++||+|||++||++||+++++..
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~ 47 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLP 47 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 36999999999999999999999999999999999999999998754
No 5
>PLN02184 superoxide dismutase [Fe]
Probab=99.82 E-value=5.5e-21 Score=140.62 Aligned_cols=47 Identities=36% Similarity=0.565 Sum_probs=44.4
Q ss_pred ccceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 036366 25 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71 (84)
Q Consensus 25 ~~~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~ 71 (84)
.++|+||+|||+|++|||+||++||++||+|||++||++||+++++.
T Consensus 8 ~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~ 54 (212)
T PLN02184 8 TANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGT 54 (212)
T ss_pred ccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45899999999999999999999999999999999999999999863
No 6
>PRK10543 superoxide dismutase; Provisional
Probab=99.80 E-value=3.1e-20 Score=134.68 Aligned_cols=46 Identities=46% Similarity=0.731 Sum_probs=43.6
Q ss_pred cceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 036366 26 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71 (84)
Q Consensus 26 ~~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~ 71 (84)
|+|+||+|||+|++|||+||++||++||+|||++||++||+++++.
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~ 46 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGT 46 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3699999999999999999999999999999999999999999853
No 7
>PLN02685 iron superoxide dismutase
Probab=99.78 E-value=1.3e-19 Score=139.88 Aligned_cols=46 Identities=41% Similarity=0.634 Sum_probs=44.1
Q ss_pred ccceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHH
Q 036366 25 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 70 (84)
Q Consensus 25 ~~~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~ 70 (84)
.++|+||+|||+|++|||+||++||++||+|||++||+|||+++++
T Consensus 44 ~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~ 89 (299)
T PLN02685 44 TAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVG 89 (299)
T ss_pred ccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999999999999975
No 8
>PLN02622 iron superoxide dismutase
Probab=99.75 E-value=1.2e-18 Score=132.11 Aligned_cols=51 Identities=29% Similarity=0.483 Sum_probs=47.0
Q ss_pred ccccccceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 036366 21 GLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 71 (84)
Q Consensus 21 ~~~~~~~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~ 71 (84)
+.+..+.|+||+|||+|++|||+||++||++||+|||++||++||+++++.
T Consensus 41 ~~~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~ 91 (261)
T PLN02622 41 ASKVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKD 91 (261)
T ss_pred cccccccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 355567899999999999999999999999999999999999999999864
No 9
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=99.74 E-value=1.2e-18 Score=126.36 Aligned_cols=42 Identities=36% Similarity=0.666 Sum_probs=40.3
Q ss_pred CCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 036366 31 PDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLF 72 (84)
Q Consensus 31 p~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~~ 72 (84)
|+|||+|++|||+||++||++||+|||++||++||+++++.+
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~ 42 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTP 42 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999999999999999999999999998754
No 10
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=5.8e-18 Score=127.35 Aligned_cols=56 Identities=63% Similarity=0.911 Sum_probs=50.2
Q ss_pred cccccceeCCCCCCCcCcccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Q 036366 22 LRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK 77 (84)
Q Consensus 22 ~~~~~~f~Lp~LpY~y~aLeP~IS~~tm~~Hy~kHH~~YV~~lN~~~~~~~~~~~~ 77 (84)
....+.+.||+|||+|++|||+||+++|++||+|||++||+++|+++++..+....
T Consensus 22 ~~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~ 77 (234)
T KOG0876|consen 22 LAVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSK 77 (234)
T ss_pred eeeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 44567899999999999999999999999999999999999999999987755443
No 11
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=68.59 E-value=5.3 Score=30.77 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 036366 50 QLHHQKHHQAYVTNYNKAVEQ 70 (84)
Q Consensus 50 ~~Hy~kHH~~YV~~lN~~~~~ 70 (84)
.-||.|||+++++..|..+.+
T Consensus 227 ~~H~rkh~reW~~~A~~~~~q 247 (251)
T COG4700 227 RPHYRKHHREWIKTANERLKQ 247 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHh
Confidence 359999999999999998875
No 12
>PF12759 HTH_Tnp_IS1: InsA C-terminal domain; InterPro: IPR024431 This entry represents the helix-turn-helix domain found at the C-terminal of InsA.
Probab=50.83 E-value=11 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.0
Q ss_pred CCcCcccccccHHHHHHHHHh
Q 036366 35 YDYSALEPAISGEIMQLHHQK 55 (84)
Q Consensus 35 Y~y~aLeP~IS~~tm~~Hy~k 55 (84)
|.|+|..|.|.+++++.=++.
T Consensus 1 YtY~A~kpgikeqIvema~nG 21 (46)
T PF12759_consen 1 YTYEARKPGIKEQIVEMAFNG 21 (46)
T ss_pred CcccccCccHHHHHHHHHhcC
Confidence 789999999999999876553
No 13
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=32.23 E-value=35 Score=15.16 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=11.8
Q ss_pred cccHHHHHHHHHhhH
Q 036366 43 AISGEIMQLHHQKHH 57 (84)
Q Consensus 43 ~IS~~tm~~Hy~kHH 57 (84)
+-+...++.|...||
T Consensus 10 ~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 10 FRSKSELRQHMRTHH 24 (24)
T ss_dssp ESSHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhhC
Confidence 456788888988886
No 14
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=31.25 E-value=27 Score=22.52 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHhhHH
Q 036366 44 ISGEIMQLHHQKHHQ 58 (84)
Q Consensus 44 IS~~tm~~Hy~kHH~ 58 (84)
.+.++|.-|+.++|+
T Consensus 95 ~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 95 RSKKTMRKHWRKEHG 109 (109)
T ss_pred ccHHHHHHHHHHhcC
Confidence 789999999999984
No 15
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=30.07 E-value=51 Score=20.70 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.2
Q ss_pred ccccHHHHHHHHHhhHHHHHHHH
Q 036366 42 PAISGEIMQLHHQKHHQAYVTNY 64 (84)
Q Consensus 42 P~IS~~tm~~Hy~kHH~~YV~~l 64 (84)
| +|.++.+.||..+|...+..+
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 6 899999999999999887764
No 16
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=29.30 E-value=66 Score=19.11 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=16.4
Q ss_pred ccccHHHHHHHHHhhHHHHHHH
Q 036366 42 PAISGEIMQLHHQKHHQAYVTN 63 (84)
Q Consensus 42 P~IS~~tm~~Hy~kHH~~YV~~ 63 (84)
|.+|.+...-||...|...|..
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~ 22 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKR 22 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHH
Confidence 7899999999999999877654
No 17
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=29.17 E-value=43 Score=21.25 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=32.1
Q ss_pred CCCCCCCcCcccccccHHHHHHHHHh-hHHHHHHHHHHHHHH
Q 036366 30 LPDLPYDYSALEPAISGEIMQLHHQK-HHQAYVTNYNKAVEQ 70 (84)
Q Consensus 30 Lp~LpY~y~aLeP~IS~~tm~~Hy~k-HH~~YV~~lN~~~~~ 70 (84)
-++-|=-+--.|-+-|++.++.|.+. |-+.++..+...+.+
T Consensus 45 d~~~~~~~~~~E~w~d~~A~~~H~~s~h~~~~~~~~~~l~~~ 86 (100)
T COG1359 45 DPDNPGRFVLIEVWEDEAALDAHLQSPHFQAFVAALPPLLAG 86 (100)
T ss_pred eCCCCCEEEEEEEECCHHHHHHHhCCHHHHHHHHhChHhhcC
Confidence 33333334446899999999999998 999999999888775
No 18
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=26.95 E-value=1.2e+02 Score=21.74 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=28.1
Q ss_pred cccHHHHHHH--HHhhHHHHHHHHHHHHHHHHHh
Q 036366 43 AISGEIMQLH--HQKHHQAYVTNYNKAVEQLFQA 74 (84)
Q Consensus 43 ~IS~~tm~~H--y~kHH~~YV~~lN~~~~~~~~~ 74 (84)
|||++|.++= ..++--.|++...+|+.++.+.
T Consensus 60 ymSkeTyeifeeee~~ip~~iD~VQ~AVD~Y~~e 93 (140)
T PF13075_consen 60 YMSKETYEIFEEEEKDIPKEIDKVQKAVDQYVKE 93 (140)
T ss_pred eeeHHHHHhhhHHHHhCHHHHHHHHHHHHHHHHh
Confidence 4899999998 8999999999999999976553
No 19
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=23.36 E-value=87 Score=14.64 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhH
Q 036366 46 GEIMQLHHQKHH 57 (84)
Q Consensus 46 ~~tm~~Hy~kHH 57 (84)
+..|..|..+||
T Consensus 12 ~~~l~~H~~~~H 23 (24)
T PF13909_consen 12 KSNLKRHLKRHH 23 (24)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC
Confidence 567899999887
No 20
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=22.67 E-value=75 Score=23.77 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 036366 56 HHQAYVTNYNKAVEQLFQAL 75 (84)
Q Consensus 56 HH~~YV~~lN~~~~~~~~~~ 75 (84)
-+.+||+.+|++..++....
T Consensus 10 SYDDYIeTinKitPQLrtlL 29 (189)
T PF04651_consen 10 SYDDYIETINKITPQLRTLL 29 (189)
T ss_pred cHHHHHHHHHHhCHHHHHHH
Confidence 36689999999999877543
Done!